Citrus Sinensis ID: 002100
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 967 | 2.2.26 [Sep-21-2011] | |||||||
| O65020 | 951 | Ethylene-overproduction p | yes | no | 0.980 | 0.996 | 0.778 | 0.0 | |
| Q9LV01 | 925 | ETO1-like protein 2 OS=Ar | no | no | 0.942 | 0.984 | 0.550 | 0.0 | |
| Q9ZQX6 | 888 | ETO1-like protein 1 OS=Ar | no | no | 0.864 | 0.941 | 0.528 | 0.0 |
| >sp|O65020|ETO1_ARATH Ethylene-overproduction protein 1 OS=Arabidopsis thaliana GN=ETO1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1534 bits (3971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 745/957 (77%), Positives = 849/957 (88%), Gaps = 9/957 (0%)
Query: 13 MRSLKIIDGCKGTQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVGEKLLNHLQDH 72
MRSLK+ +GCKGTQV+A+NPS P GGGGGGG GGG VG+KLL HL DH
Sbjct: 1 MRSLKLAEGCKGTQVYALNPSAPTPPPPPGNSSTGGGGGGGSGGGTGGVGDKLLQHLSDH 60
Query: 73 LRVNSIRSKSNRSYQMPVQAPVVI--ESVLPYGLPITDLLEPQIEPCLKFVDFVETLADL 130
LRVNS+RSKS+R+Y P Q V+ E +LP GLP+TDLLEPQI+PCLKFVD VE +A +
Sbjct: 61 LRVNSVRSKSSRTYPPPTQPNAVVSPEFLLPCGLPVTDLLEPQIDPCLKFVDLVEKMAQV 120
Query: 131 YRRIEDCPQFEKSGVYLEQCAIFRGLSDPKLFRRSLRCARQHAVDVHTKIVLAAWLRFER 190
YRRIE+C QFEKSG YLEQCAIFRG+SDPKLFRRSLR +RQHAVDVH K+VLA+WLRFER
Sbjct: 121 YRRIENCSQFEKSGAYLEQCAIFRGISDPKLFRRSLRSSRQHAVDVHAKVVLASWLRFER 180
Query: 191 REDELIGTSAMDCCGRNLECPKATMVSGYDPESVYDSCLCSRTARQEFRDDISMEDEECS 250
REDELIGT++MDCCGRNLECPKAT+VSGYDPESVYD C+CS +R E M ++ECS
Sbjct: 181 REDELIGTTSMDCCGRNLECPKATLVSGYDPESVYDPCVCSGASRSEM-----MNEDECS 235
Query: 251 TSDE-DWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAM 309
TS E D+DMSFCIG++E+RCVRYKIASLSRPF+ MLYGGF E +R +NF+QNGISVE M
Sbjct: 236 TSQEVDYDMSFCIGDEEVRCVRYKIASLSRPFKAMLYGGFREMKRATINFTQNGISVEGM 295
Query: 310 RAAEEFSRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYG 369
RAAE FSRT LD+F P +VLELL ANRFCC+ELKSACDS+LA +V+ +++A++LIEYG
Sbjct: 296 RAAEIFSRTNRLDNFPPNVVLELLKLANRFCCDELKSACDSHLAHLVNSLDEAMLLIEYG 355
Query: 370 LEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARERLAMVGHASFVLYYFLSQIG 429
LEEAAYLLVAACLQV LRELP SM NPNV++IFCSAE RERLA +GHASF LY+FLSQI
Sbjct: 356 LEEAAYLLVAACLQVFLRELPSSMHNPNVIKIFCSAEGRERLASLGHASFTLYFFLSQIA 415
Query: 430 MEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHI 489
ME+DMKSNTTVMLLERLVE A +SW+KQLA+HQLGVVMLER+EYKDAQ WF AAVEAGH+
Sbjct: 416 MEDDMKSNTTVMLLERLVECAVDSWEKQLAYHQLGVVMLERKEYKDAQRWFNAAVEAGHL 475
Query: 490 YSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELD 549
YSLVGVARTKFKR H+YSAYK++NSLISD+ GWM+QERSLYCSGKEK++DL+TATE D
Sbjct: 476 YSLVGVARTKFKRDHRYSAYKIINSLISDHKATGWMHQERSLYCSGKEKLLDLDTATEFD 535
Query: 550 PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDV 609
PTL++PYK+RA+ LVEEN+ AAI E+N+I+GFK SPDCLE+RAWISI +EDY+GAL+D+
Sbjct: 536 PTLTFPYKFRAVALVEENQFGAAIAELNKILGFKASPDCLEMRAWISIGMEDYEGALKDI 595
Query: 610 RALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHH 669
RALLTL+P++MMF ++HGD++VE L+PL QQWSQADCWMQLYDRWSSVDDIGSLAVVHH
Sbjct: 596 RALLTLEPNFMMFNWKIHGDHMVELLRPLAQQWSQADCWMQLYDRWSSVDDIGSLAVVHH 655
Query: 670 MLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHRE 729
MLANDPGKSLLRFRQSLLLLRLN QKAAMRSLRLARN+S SEHE+LVYEGWILYDTGHRE
Sbjct: 656 MLANDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSKSEHERLVYEGWILYDTGHRE 715
Query: 730 EALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQAL 789
EALAKAEESISIQRSFEAFFLKAYALADS+L+P+SS YVIQLL+EAL+CPSDGLRKGQAL
Sbjct: 716 EALAKAEESISIQRSFEAFFLKAYALADSTLDPDSSNYVIQLLQEALKCPSDGLRKGQAL 775
Query: 790 NNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKAR 849
NNLGSVYVDCEKLDLAADCY NAL IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKA+
Sbjct: 776 NNLGSVYVDCEKLDLAADCYTNALTIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKAQ 835
Query: 850 NNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAI 909
NNASAYEKRSEYCDR+MA+SDL +ATQLDP+RTYPYRYRAAVLMDDHKE+EAI ELSRAI
Sbjct: 836 NNASAYEKRSEYCDREMAQSDLCLATQLDPLRTYPYRYRAAVLMDDHKESEAIDELSRAI 895
Query: 910 AFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNEQQ 966
+FKPDLQLLHLRAAF+DSMG+ +DCEAALC+DP H DTLELY KA E N+Q+
Sbjct: 896 SFKPDLQLLHLRAAFYDSMGEGASAIKDCEAALCIDPGHADTLELYHKARE-PNDQK 951
|
Essential regulator of the ethylene pathway, which acts by regulating the stability of 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes. May act as a substrate-specific adapter that connects ACS enzymes, such as ACS5, to ubiquitin ligase complexes, leading to proteasomal degradation of ACS enzymes. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LV01|ETOL2_ARATH ETO1-like protein 2 OS=Arabidopsis thaliana GN=EOL2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1039 bits (2687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/955 (55%), Positives = 684/955 (71%), Gaps = 44/955 (4%)
Query: 13 MRSLKIIDGCKGTQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVGEKLLNHLQDH 72
MR+LK+ + K TQV A P+ GS K L H
Sbjct: 1 MRNLKLFERFKSTQVHAFTTQDSPSTSSN----------------GSPRMMKFLGH---- 40
Query: 73 LRVNSIRSKSNRSYQMPVQAPVVIESVLPYGLPITDLLEPQIEPCLKFVDFVETLADLYR 132
+SKS S+LP+G P TDLLEP ++ LK +D VE+L++LYR
Sbjct: 41 -----PKSKSR--------------SLLPHGFPTTDLLEPPLDSYLKPIDLVESLSNLYR 81
Query: 133 RIEDCPQFEKSGVYLEQCAIFRGLSDPKLFRRSLRCARQHAVDVHTKIVLAAWLRFERRE 192
RIE + E S +YLEQ A+ R L D KL RR L AR+HA+DV K+V +AWLRF RRE
Sbjct: 82 RIESSSESEASMLYLEQYAVLRSLGDAKLLRRCLLNARRHAIDVPCKVVFSAWLRFFRRE 141
Query: 193 DELIGTSAMDCCGRNLECPKATMVSGYDPESVYDSCLCSRTARQEF-RDDISMED-EECS 250
EL+G +MDC G ECPK ++ G D + C CS EF DD+ + +E S
Sbjct: 142 HELVGVESMDCNGLASECPKTSLTHGCDLNVDDEGCECSTVCEDEFGSDDVKISKADEFS 201
Query: 251 TSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMR 310
DE D+SFC+G+++ +CVR +IA+LSRPF MLYG F+ES +++FS+NGIS+EAM
Sbjct: 202 GLDEVSDISFCVGSEKAKCVRSRIAALSRPFEAMLYGSFVESTTSEIDFSENGISIEAML 261
Query: 311 AAEEFSRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGL 370
A +SR K +D F V ELL A++FCC++LKS C++ LA+ V+D++ A+ +EY L
Sbjct: 262 ALNIYSRIKRVDLFRVETVFELLQLASKFCCDDLKSECEARLAASVTDLDKALTFVEYAL 321
Query: 371 EEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARERLAMVG-HASFVLYYFLSQIG 429
EE LL++ACLQV LRELP S+ NP VMR FCS+EA+E+LA +G F+LYYFLSQ+G
Sbjct: 322 EERTTLLLSACLQVFLRELPQSLHNPKVMRFFCSSEAKEQLAFLGSECVFLLYYFLSQVG 381
Query: 430 MEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHI 489
MEE + ++T ++LLER E A +WQK L+ HQ+G V+ ER++YK AQ F+ A GH+
Sbjct: 382 MEEKLTTDTMLILLERTREFARTNWQKALSLHQMGCVLFERKDYKAAQFHFRLASSLGHV 441
Query: 490 YSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELD 549
YSL GV+RT++K+G +YSAY+LMN LIS++ P GWMYQERSLY G EK+ DL TATELD
Sbjct: 442 YSLAGVSRTEYKQGKRYSAYRLMNFLISNHKPHGWMYQERSLYNVGVEKLKDLATATELD 501
Query: 550 PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDV 609
PTLS+PYKYRA++ E+ ++ A EI+R+I FK+SP+CLELRAW+ +A D + LRD+
Sbjct: 502 PTLSFPYKYRAVMKFEQKQIKEAFQEIDRLIQFKLSPECLELRAWLYLATGDRESCLRDL 561
Query: 610 RALLTLDPSYMMFYGQLHGDNLVETLQP-LVQQWSQADCWMQLYDRWSSVDDIGSLAVVH 668
RA+L+L+P+Y++F G++ D+LVE L ++ S+ADCW++L+DRWS+VDD+ SLAVVH
Sbjct: 562 RAVLSLEPNYVVFGGKMR-DDLVEALTAQCIEVESEADCWVRLFDRWSAVDDVASLAVVH 620
Query: 669 HMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHR 728
ML NDP K+ LRFRQSLLLLRLN Q AAMR LR+A N +TSE E+LVYEGW+LYD G+
Sbjct: 621 QMLQNDPSKNFLRFRQSLLLLRLNCQGAAMRCLRMAWNLATSEAERLVYEGWLLYDMGYV 680
Query: 729 EEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQA 788
EE L KAEE+ISIQRSFEAFFLKAYALAD +L+ + + V+Q+LEEAL+CPSDGLRKGQA
Sbjct: 681 EETLTKAEEAISIQRSFEAFFLKAYALADKNLDADEISCVVQVLEEALKCPSDGLRKGQA 740
Query: 789 LNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKA 848
LNNLGS+Y++ LD A Y NA+ IKH RA QGLARVY LKNQRK A +EMTKLIEK+
Sbjct: 741 LNNLGSIYINLGMLDQAETAYKNAIEIKHIRARQGLARVYFLKNQRKEACEEMTKLIEKS 800
Query: 849 RNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRA 908
+ A+AYEKRSEYC+R+ AK DL MAT LDP+RTYPYRYRAAVLMDD +E EA+ ELS+A
Sbjct: 801 CSKAAAYEKRSEYCEREKAKEDLDMATTLDPLRTYPYRYRAAVLMDDQRETEAVEELSKA 860
Query: 909 IAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVN 963
IAF+P+LQ LHLRAAFH++ G+ +DCEAALCLDPNHT+TL LY ++ ++ +
Sbjct: 861 IAFRPELQTLHLRAAFHEATGNLSLATQDCEAALCLDPNHTETLHLYSRSKDQAS 915
|
Potential regulator of the ethylene pathway, which acts by regulating the stability of 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes. May act as a substrate-specific adapter that connects ACS enzymes, such as ACS5, to ubiquitin ligase complexes, leading to proteasomal degradation of ACS enzymes. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZQX6|ETOL1_ARATH ETO1-like protein 1 OS=Arabidopsis thaliana GN=EOL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/857 (52%), Positives = 601/857 (70%), Gaps = 21/857 (2%)
Query: 111 EPQIEPCLKFVDFVETLADLYRRIEDCPQFEKSGVYLEQCAIFRGLSDPKLFRRSLRCAR 170
EPQI P K +D+VE LA ++ ++ CP E+S +YL Q +FRGL + KL RRSL+ A
Sbjct: 51 EPQILPHYKPLDYVEVLAQIHEELDTCPLQERSILYLLQYQVFRGLGETKLRRRSLQSAW 110
Query: 171 QHAVDVHTKIVLAAWLRFERREDELIGTSAMDCCGRNLECPKATMVSGYDPESVYDSCLC 230
Q A VH K+V +WLR+E++ +E+I T + CG+ E ++ Y P + S
Sbjct: 111 QEATTVHEKVVFGSWLRYEKQGEEVI-TDLLSSCGKYSEEFVPLDIASYFPATTASS--- 166
Query: 231 SRTARQEFRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFI 290
A + +S ++ F IG ++I C R KIASLS PF MLYG F
Sbjct: 167 PEAASVKTNRSVSK------------NVVFKIGEEKIACQRRKIASLSAPFHAMLYGNFT 214
Query: 291 ESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVLELLSFANRFCCEELKSACDS 350
ES ++++ S+N +S AMR +FS +L L+LE+L FAN+FCCE LK ACD
Sbjct: 215 ESLLDEIDMSENHVSSSAMRVVRDFSVVGVLIGVSKNLLLEVLVFANKFCCERLKDACDR 274
Query: 351 YLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARER 410
LAS++S +E A+ L+++ LEE + +L ++CLQV L E+P S+ + V+ + +
Sbjct: 275 ELASLISSMECAIELMDFALEENSPILASSCLQVFLYEMPDSLNDERVVEVLTRVNRSQV 334
Query: 411 LAMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLER 470
M G A F LY LS++ M D +S+ T+ LE+LV+ A Q+ L FH+LG + L R
Sbjct: 335 STMAGKAPFSLYSCLSEVSMCIDPRSDRTLGFLEKLVDFAENDRQQVLGFHRLGCMRLLR 394
Query: 471 EEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAY-KLMNSLISDYTPVGWMYQER 529
+EY++A+ F+ A GH+YS G+AR + +GH+ AY KL + + S P+GWMYQER
Sbjct: 395 KEYREAEEAFETAFNLGHVYSATGLARLGYIQGHRLWAYEKLSSVISSVSPPLGWMYQER 454
Query: 530 SLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCL 589
S YC G +K+ DL ATELDPTL+YPY YRA+ + + AA+ EINRI+GFK++ +CL
Sbjct: 455 SFYCEGDKKLEDLEKATELDPTLTYPYMYRAVTRMSKQNAKAALEEINRILGFKLALECL 514
Query: 590 ELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWM 649
E+R + + ++DY+ ALRD++A LTL P Y MF G++ G L + V+ W+ ADCWM
Sbjct: 515 EIRFCLYLGMDDYEAALRDIQAALTLCPDYRMFDGKVAGRQLQTLVYEHVENWTTADCWM 574
Query: 650 QLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST 709
QLY++WS+VDDIGSL+V++ ML +D K +L FRQSLLLLRLN +AAMRSL+LAR +++
Sbjct: 575 QLYEKWSNVDDIGSLSVIYQMLESDACKGVLYFRQSLLLLRLNCPEAAMRSLQLAREHAS 634
Query: 710 SEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVI 769
S+HE+LVYEGWILYDTGH EE L KA+ESI I+RSFEA+FL+AYALA+SSL+P SS+ V+
Sbjct: 635 SDHERLVYEGWILYDTGHCEEGLQKAKESIGIKRSFEAYFLQAYALAESSLDPSSSSTVV 694
Query: 770 QLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYH 829
LLE+AL+CPSD LRKGQALNNLGSVYVDCEKLDLAADCY+NAL ++HTRAHQGLARV+
Sbjct: 695 SLLEDALKCPSDRLRKGQALNNLGSVYVDCEKLDLAADCYINALKVRHTRAHQGLARVHF 754
Query: 830 LKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRA 889
L+N + AAY+EMT+LIEKA+NNASAYEKRSEYCDR++AKSDL M T+LDP+R YPYRYRA
Sbjct: 755 LRNDKAAAYEEMTRLIEKAQNNASAYEKRSEYCDRELAKSDLEMVTRLDPLRVYPYRYRA 814
Query: 890 AVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHT 949
AVLMD KE EAI ELSRAIAFK DL LLHLRAAFH+ +GD RDC AAL +DPNH
Sbjct: 815 AVLMDSRKEREAITELSRAIAFKADLHLLHLRAAFHEHIGDVTSALRDCRAALSVDPNHQ 874
Query: 950 DTLELYDKATERVNEQQ 966
+ LEL+ RVN +
Sbjct: 875 EMLELHS----RVNSHE 887
|
Possible regulator of the ethylene pathway, which acts by regulating the stability of 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes. May act as a substrate-specific adapter that connects ACS enzymes, such as ACS5, to ubiquitin ligase complexes, leading to proteasomal degradation of ACS enzymes. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 967 | ||||||
| 240255605 | 959 | tetratricopeptide repeat (TPR)-containin | 0.988 | 0.996 | 0.778 | 0.0 | |
| 240255603 | 951 | tetratricopeptide repeat (TPR)-containin | 0.980 | 0.996 | 0.778 | 0.0 | |
| 50400253 | 951 | RecName: Full=Ethylene-overproduction pr | 0.980 | 0.996 | 0.778 | 0.0 | |
| 3068704 | 958 | unknown [Arabidopsis thaliana] | 0.987 | 0.996 | 0.773 | 0.0 | |
| 297819878 | 947 | ethylene-overproduction protein 1 [Arabi | 0.975 | 0.995 | 0.768 | 0.0 | |
| 312282665 | 958 | unnamed protein product [Thellungiella h | 0.977 | 0.986 | 0.761 | 0.0 | |
| 225439486 | 951 | PREDICTED: ethylene-overproduction prote | 0.982 | 0.998 | 0.783 | 0.0 | |
| 356496239 | 954 | PREDICTED: ethylene-overproduction prote | 0.973 | 0.986 | 0.743 | 0.0 | |
| 356503093 | 960 | PREDICTED: ethylene-overproduction prote | 0.979 | 0.986 | 0.740 | 0.0 | |
| 357468583 | 936 | hypothetical protein MTR_4g014680 [Medic | 0.956 | 0.988 | 0.706 | 0.0 |
| >gi|240255605|ref|NP_001030839.5| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] gi|332645320|gb|AEE78841.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1550 bits (4014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 751/965 (77%), Positives = 855/965 (88%), Gaps = 9/965 (0%)
Query: 5 MQQNFFTTMRSLKIIDGCKGTQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVGEK 64
MQ N FTTMRSLK+ +GCKGTQV+A+NPS P GGGGGGG GGG VG+K
Sbjct: 1 MQHNLFTTMRSLKLAEGCKGTQVYALNPSAPTPPPPPGNSSSGGGGGGGSGGGTGGVGDK 60
Query: 65 LLNHLQDHLRVNSIRSKSNRSYQMPVQAPVVI--ESVLPYGLPITDLLEPQIEPCLKFVD 122
LL HL DHLRVNS+RSKS+R+Y P Q V+ E +LP GLP+TDLLEPQI+PCLKFVD
Sbjct: 61 LLQHLSDHLRVNSVRSKSSRTYPPPTQPNAVVSPEFLLPCGLPVTDLLEPQIDPCLKFVD 120
Query: 123 FVETLADLYRRIEDCPQFEKSGVYLEQCAIFRGLSDPKLFRRSLRCARQHAVDVHTKIVL 182
VE +A +YRRIE+C QFEKSG YLEQCAIFRG+SDPKLFRRSLR +RQHAVDVH K+VL
Sbjct: 121 LVEKMAQVYRRIENCSQFEKSGAYLEQCAIFRGISDPKLFRRSLRSSRQHAVDVHAKVVL 180
Query: 183 AAWLRFERREDELIGTSAMDCCGRNLECPKATMVSGYDPESVYDSCLCSRTARQEFRDDI 242
A+WLRFERREDELIGT++MDCCGRNLECPKAT+VSGYDPESVYD C+CS +R E
Sbjct: 181 ASWLRFERREDELIGTTSMDCCGRNLECPKATLVSGYDPESVYDPCVCSGASRSEM---- 236
Query: 243 SMEDEECSTSDE-DWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQ 301
M ++ECSTS E D+DMSFCIG++E+RCVRYKIASLSRPF+ MLYGGF E +R +NF+Q
Sbjct: 237 -MNEDECSTSQEVDYDMSFCIGDEEVRCVRYKIASLSRPFKAMLYGGFREMKRATINFTQ 295
Query: 302 NGISVEAMRAAEEFSRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIED 361
NGISVE MRAAE FSRT LD+F P +VLELL ANRFCC+ELKSACDS+LA +V+ +++
Sbjct: 296 NGISVEGMRAAEIFSRTNRLDNFPPNVVLELLKLANRFCCDELKSACDSHLAHLVNSLDE 355
Query: 362 AVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARERLAMVGHASFVL 421
A++LIEYGLEEAAYLLVAACLQV LRELP SM NPNV++IFCSAE RERLA +GHASF L
Sbjct: 356 AMLLIEYGLEEAAYLLVAACLQVFLRELPSSMHNPNVIKIFCSAEGRERLASLGHASFTL 415
Query: 422 YYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFK 481
Y+FLSQI ME+DMKSNTTVMLLERLVE A +SW+KQLA+HQLGVVMLER+EYKDAQ WF
Sbjct: 416 YFFLSQIAMEDDMKSNTTVMLLERLVECAVDSWEKQLAYHQLGVVMLERKEYKDAQRWFN 475
Query: 482 AAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMD 541
AAVEAGH+YSLVGVARTKFKR H+YSAYK++NSLISD+ GWM+QERSLYCSGKEK++D
Sbjct: 476 AAVEAGHLYSLVGVARTKFKRDHRYSAYKIINSLISDHKATGWMHQERSLYCSGKEKLLD 535
Query: 542 LNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALED 601
L+TATE DPTL++PYK+RA+ LVEEN+ AAI E+N+I+GFK SPDCLE+RAWISI +ED
Sbjct: 536 LDTATEFDPTLTFPYKFRAVALVEENQFGAAIAELNKILGFKASPDCLEMRAWISIGMED 595
Query: 602 YDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDI 661
Y+GAL+D+RALLTL+P++MMF ++HGD++VE L+PL QQWSQADCWMQLYDRWSSVDDI
Sbjct: 596 YEGALKDIRALLTLEPNFMMFNWKIHGDHMVELLRPLAQQWSQADCWMQLYDRWSSVDDI 655
Query: 662 GSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWI 721
GSLAVVHHMLANDPGKSLLRFRQSLLLLRLN QKAAMRSLRLARN+S SEHE+LVYEGWI
Sbjct: 656 GSLAVVHHMLANDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSKSEHERLVYEGWI 715
Query: 722 LYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSD 781
LYDTGHREEALAKAEESISIQRSFEAFFLKAYALADS+L+P+SS YVIQLL+EAL+CPSD
Sbjct: 716 LYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSTLDPDSSNYVIQLLQEALKCPSD 775
Query: 782 GLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEM 841
GLRKGQALNNLGSVYVDCEKLDLAADCY NAL IKHTRAHQGLARVYHLKNQRKAAYDEM
Sbjct: 776 GLRKGQALNNLGSVYVDCEKLDLAADCYTNALTIKHTRAHQGLARVYHLKNQRKAAYDEM 835
Query: 842 TKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEA 901
TKLIEKA+NNASAYEKRSEYCDR+MA+SDL +ATQLDP+RTYPYRYRAAVLMDDHKE+EA
Sbjct: 836 TKLIEKAQNNASAYEKRSEYCDREMAQSDLCLATQLDPLRTYPYRYRAAVLMDDHKESEA 895
Query: 902 IAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATER 961
I ELSRAI+FKPDLQLLHLRAAF+DSMG+ +DCEAALC+DP H DTLELY KA E
Sbjct: 896 IDELSRAISFKPDLQLLHLRAAFYDSMGEGASAIKDCEAALCIDPGHADTLELYHKARE- 954
Query: 962 VNEQQ 966
N+Q+
Sbjct: 955 PNDQK 959
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240255603|ref|NP_190745.6| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] gi|332645319|gb|AEE78840.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1536 bits (3976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 745/957 (77%), Positives = 849/957 (88%), Gaps = 9/957 (0%)
Query: 13 MRSLKIIDGCKGTQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVGEKLLNHLQDH 72
MRSLK+ +GCKGTQV+A+NPS P GGGGGGG GGG VG+KLL HL DH
Sbjct: 1 MRSLKLAEGCKGTQVYALNPSAPTPPPPPGNSSSGGGGGGGSGGGTGGVGDKLLQHLSDH 60
Query: 73 LRVNSIRSKSNRSYQMPVQAPVVI--ESVLPYGLPITDLLEPQIEPCLKFVDFVETLADL 130
LRVNS+RSKS+R+Y P Q V+ E +LP GLP+TDLLEPQI+PCLKFVD VE +A +
Sbjct: 61 LRVNSVRSKSSRTYPPPTQPNAVVSPEFLLPCGLPVTDLLEPQIDPCLKFVDLVEKMAQV 120
Query: 131 YRRIEDCPQFEKSGVYLEQCAIFRGLSDPKLFRRSLRCARQHAVDVHTKIVLAAWLRFER 190
YRRIE+C QFEKSG YLEQCAIFRG+SDPKLFRRSLR +RQHAVDVH K+VLA+WLRFER
Sbjct: 121 YRRIENCSQFEKSGAYLEQCAIFRGISDPKLFRRSLRSSRQHAVDVHAKVVLASWLRFER 180
Query: 191 REDELIGTSAMDCCGRNLECPKATMVSGYDPESVYDSCLCSRTARQEFRDDISMEDEECS 250
REDELIGT++MDCCGRNLECPKAT+VSGYDPESVYD C+CS +R E M ++ECS
Sbjct: 181 REDELIGTTSMDCCGRNLECPKATLVSGYDPESVYDPCVCSGASRSEM-----MNEDECS 235
Query: 251 TSDE-DWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAM 309
TS E D+DMSFCIG++E+RCVRYKIASLSRPF+ MLYGGF E +R +NF+QNGISVE M
Sbjct: 236 TSQEVDYDMSFCIGDEEVRCVRYKIASLSRPFKAMLYGGFREMKRATINFTQNGISVEGM 295
Query: 310 RAAEEFSRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYG 369
RAAE FSRT LD+F P +VLELL ANRFCC+ELKSACDS+LA +V+ +++A++LIEYG
Sbjct: 296 RAAEIFSRTNRLDNFPPNVVLELLKLANRFCCDELKSACDSHLAHLVNSLDEAMLLIEYG 355
Query: 370 LEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARERLAMVGHASFVLYYFLSQIG 429
LEEAAYLLVAACLQV LRELP SM NPNV++IFCSAE RERLA +GHASF LY+FLSQI
Sbjct: 356 LEEAAYLLVAACLQVFLRELPSSMHNPNVIKIFCSAEGRERLASLGHASFTLYFFLSQIA 415
Query: 430 MEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHI 489
ME+DMKSNTTVMLLERLVE A +SW+KQLA+HQLGVVMLER+EYKDAQ WF AAVEAGH+
Sbjct: 416 MEDDMKSNTTVMLLERLVECAVDSWEKQLAYHQLGVVMLERKEYKDAQRWFNAAVEAGHL 475
Query: 490 YSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELD 549
YSLVGVARTKFKR H+YSAYK++NSLISD+ GWM+QERSLYCSGKEK++DL+TATE D
Sbjct: 476 YSLVGVARTKFKRDHRYSAYKIINSLISDHKATGWMHQERSLYCSGKEKLLDLDTATEFD 535
Query: 550 PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDV 609
PTL++PYK+RA+ LVEEN+ AAI E+N+I+GFK SPDCLE+RAWISI +EDY+GAL+D+
Sbjct: 536 PTLTFPYKFRAVALVEENQFGAAIAELNKILGFKASPDCLEMRAWISIGMEDYEGALKDI 595
Query: 610 RALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHH 669
RALLTL+P++MMF ++HGD++VE L+PL QQWSQADCWMQLYDRWSSVDDIGSLAVVHH
Sbjct: 596 RALLTLEPNFMMFNWKIHGDHMVELLRPLAQQWSQADCWMQLYDRWSSVDDIGSLAVVHH 655
Query: 670 MLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHRE 729
MLANDPGKSLLRFRQSLLLLRLN QKAAMRSLRLARN+S SEHE+LVYEGWILYDTGHRE
Sbjct: 656 MLANDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSKSEHERLVYEGWILYDTGHRE 715
Query: 730 EALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQAL 789
EALAKAEESISIQRSFEAFFLKAYALADS+L+P+SS YVIQLL+EAL+CPSDGLRKGQAL
Sbjct: 716 EALAKAEESISIQRSFEAFFLKAYALADSTLDPDSSNYVIQLLQEALKCPSDGLRKGQAL 775
Query: 790 NNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKAR 849
NNLGSVYVDCEKLDLAADCY NAL IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKA+
Sbjct: 776 NNLGSVYVDCEKLDLAADCYTNALTIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKAQ 835
Query: 850 NNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAI 909
NNASAYEKRSEYCDR+MA+SDL +ATQLDP+RTYPYRYRAAVLMDDHKE+EAI ELSRAI
Sbjct: 836 NNASAYEKRSEYCDREMAQSDLCLATQLDPLRTYPYRYRAAVLMDDHKESEAIDELSRAI 895
Query: 910 AFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNEQQ 966
+FKPDLQLLHLRAAF+DSMG+ +DCEAALC+DP H DTLELY KA E N+Q+
Sbjct: 896 SFKPDLQLLHLRAAFYDSMGEGASAIKDCEAALCIDPGHADTLELYHKARE-PNDQK 951
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|50400253|sp|O65020.2|ETO1_ARATH RecName: Full=Ethylene-overproduction protein 1; AltName: Full=Protein ETHYLENE OVERPRODUCER 1; Short=Protein ETO1 gi|46810683|gb|AAT01656.1| ethylene overproducer 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1534 bits (3971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 745/957 (77%), Positives = 849/957 (88%), Gaps = 9/957 (0%)
Query: 13 MRSLKIIDGCKGTQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVGEKLLNHLQDH 72
MRSLK+ +GCKGTQV+A+NPS P GGGGGGG GGG VG+KLL HL DH
Sbjct: 1 MRSLKLAEGCKGTQVYALNPSAPTPPPPPGNSSTGGGGGGGSGGGTGGVGDKLLQHLSDH 60
Query: 73 LRVNSIRSKSNRSYQMPVQAPVVI--ESVLPYGLPITDLLEPQIEPCLKFVDFVETLADL 130
LRVNS+RSKS+R+Y P Q V+ E +LP GLP+TDLLEPQI+PCLKFVD VE +A +
Sbjct: 61 LRVNSVRSKSSRTYPPPTQPNAVVSPEFLLPCGLPVTDLLEPQIDPCLKFVDLVEKMAQV 120
Query: 131 YRRIEDCPQFEKSGVYLEQCAIFRGLSDPKLFRRSLRCARQHAVDVHTKIVLAAWLRFER 190
YRRIE+C QFEKSG YLEQCAIFRG+SDPKLFRRSLR +RQHAVDVH K+VLA+WLRFER
Sbjct: 121 YRRIENCSQFEKSGAYLEQCAIFRGISDPKLFRRSLRSSRQHAVDVHAKVVLASWLRFER 180
Query: 191 REDELIGTSAMDCCGRNLECPKATMVSGYDPESVYDSCLCSRTARQEFRDDISMEDEECS 250
REDELIGT++MDCCGRNLECPKAT+VSGYDPESVYD C+CS +R E M ++ECS
Sbjct: 181 REDELIGTTSMDCCGRNLECPKATLVSGYDPESVYDPCVCSGASRSEM-----MNEDECS 235
Query: 251 TSDE-DWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAM 309
TS E D+DMSFCIG++E+RCVRYKIASLSRPF+ MLYGGF E +R +NF+QNGISVE M
Sbjct: 236 TSQEVDYDMSFCIGDEEVRCVRYKIASLSRPFKAMLYGGFREMKRATINFTQNGISVEGM 295
Query: 310 RAAEEFSRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYG 369
RAAE FSRT LD+F P +VLELL ANRFCC+ELKSACDS+LA +V+ +++A++LIEYG
Sbjct: 296 RAAEIFSRTNRLDNFPPNVVLELLKLANRFCCDELKSACDSHLAHLVNSLDEAMLLIEYG 355
Query: 370 LEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARERLAMVGHASFVLYYFLSQIG 429
LEEAAYLLVAACLQV LRELP SM NPNV++IFCSAE RERLA +GHASF LY+FLSQI
Sbjct: 356 LEEAAYLLVAACLQVFLRELPSSMHNPNVIKIFCSAEGRERLASLGHASFTLYFFLSQIA 415
Query: 430 MEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHI 489
ME+DMKSNTTVMLLERLVE A +SW+KQLA+HQLGVVMLER+EYKDAQ WF AAVEAGH+
Sbjct: 416 MEDDMKSNTTVMLLERLVECAVDSWEKQLAYHQLGVVMLERKEYKDAQRWFNAAVEAGHL 475
Query: 490 YSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELD 549
YSLVGVARTKFKR H+YSAYK++NSLISD+ GWM+QERSLYCSGKEK++DL+TATE D
Sbjct: 476 YSLVGVARTKFKRDHRYSAYKIINSLISDHKATGWMHQERSLYCSGKEKLLDLDTATEFD 535
Query: 550 PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDV 609
PTL++PYK+RA+ LVEEN+ AAI E+N+I+GFK SPDCLE+RAWISI +EDY+GAL+D+
Sbjct: 536 PTLTFPYKFRAVALVEENQFGAAIAELNKILGFKASPDCLEMRAWISIGMEDYEGALKDI 595
Query: 610 RALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHH 669
RALLTL+P++MMF ++HGD++VE L+PL QQWSQADCWMQLYDRWSSVDDIGSLAVVHH
Sbjct: 596 RALLTLEPNFMMFNWKIHGDHMVELLRPLAQQWSQADCWMQLYDRWSSVDDIGSLAVVHH 655
Query: 670 MLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHRE 729
MLANDPGKSLLRFRQSLLLLRLN QKAAMRSLRLARN+S SEHE+LVYEGWILYDTGHRE
Sbjct: 656 MLANDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSKSEHERLVYEGWILYDTGHRE 715
Query: 730 EALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQAL 789
EALAKAEESISIQRSFEAFFLKAYALADS+L+P+SS YVIQLL+EAL+CPSDGLRKGQAL
Sbjct: 716 EALAKAEESISIQRSFEAFFLKAYALADSTLDPDSSNYVIQLLQEALKCPSDGLRKGQAL 775
Query: 790 NNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKAR 849
NNLGSVYVDCEKLDLAADCY NAL IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKA+
Sbjct: 776 NNLGSVYVDCEKLDLAADCYTNALTIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKAQ 835
Query: 850 NNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAI 909
NNASAYEKRSEYCDR+MA+SDL +ATQLDP+RTYPYRYRAAVLMDDHKE+EAI ELSRAI
Sbjct: 836 NNASAYEKRSEYCDREMAQSDLCLATQLDPLRTYPYRYRAAVLMDDHKESEAIDELSRAI 895
Query: 910 AFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNEQQ 966
+FKPDLQLLHLRAAF+DSMG+ +DCEAALC+DP H DTLELY KA E N+Q+
Sbjct: 896 SFKPDLQLLHLRAAFYDSMGEGASAIKDCEAALCIDPGHADTLELYHKARE-PNDQK 951
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3068704|gb|AAC14404.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1530 bits (3961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 746/965 (77%), Positives = 850/965 (88%), Gaps = 10/965 (1%)
Query: 5 MQQNFFTTMRSLKIIDGCKGTQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVGEK 64
MQ N FTTMRSLK+ +GCKGTQV+A+NPS P GGGGGGG GGG VG+K
Sbjct: 1 MQHNLFTTMRSLKLAEGCKGTQVYALNPSAPTPPPPPGNSSTGGGGGGGSGGGTGGVGDK 60
Query: 65 LLNHLQDHLRVNSIRSKSNRSYQMPVQAPVVI--ESVLPYGLPITDLLEPQIEPCLKFVD 122
LL HL DHLRVNS+RSKS+R+Y P Q V+ E +LP GLP+TDLLEPQI+PCLKFVD
Sbjct: 61 LLQHLSDHLRVNSVRSKSSRTYPPPTQPNAVVSPEFLLPCGLPVTDLLEPQIDPCLKFVD 120
Query: 123 FVETLADLYRRIEDCPQFEKSGVYLEQCAIFRGLSDPKLFRRSLRCARQHAVDVHTKIVL 182
VE +A +YRRIE+C QFEKSG YLEQCAIFRG+SDPKLFRRSLR +RQHAVDVH K+VL
Sbjct: 121 LVEKMAQVYRRIENCSQFEKSGAYLEQCAIFRGISDPKLFRRSLRSSRQHAVDVHAKVVL 180
Query: 183 AAWLRFERREDELIGTSAMDCCGRNLECPKATMVSGYDPESVYDSCLCSRTARQEFRDDI 242
A+WL R DELIGT++MDCCGRNLECPKAT+VSGYDPESVYD C+CS +R E
Sbjct: 181 ASWLS-SRGGDELIGTTSMDCCGRNLECPKATLVSGYDPESVYDPCVCSGASRSEM---- 235
Query: 243 SMEDEECSTSDE-DWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQ 301
M ++ECSTS E D+DMSFCIG++E+RCVRYKIASLSRPF+ MLYGGF E +R +NF+Q
Sbjct: 236 -MNEDECSTSQEVDYDMSFCIGDEEVRCVRYKIASLSRPFKAMLYGGFREMKRATINFTQ 294
Query: 302 NGISVEAMRAAEEFSRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIED 361
NGISVE MRAAE FSRT LD+F P +VLELL ANRFCC+ELKSACDS+LA +V+ +++
Sbjct: 295 NGISVEGMRAAEIFSRTNRLDNFPPNVVLELLKLANRFCCDELKSACDSHLAHLVNSLDE 354
Query: 362 AVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARERLAMVGHASFVL 421
A++LIEYGLEEAAYLLVAACLQV LRELP SM NPNV++IFCSAE RERLA +GHASF L
Sbjct: 355 AMLLIEYGLEEAAYLLVAACLQVFLRELPSSMHNPNVIKIFCSAEGRERLASLGHASFTL 414
Query: 422 YYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFK 481
Y+FLSQI ME+DMKSNTTVMLLERLVE A +SW+KQLA+HQLGVVMLER+EYKDAQ WF
Sbjct: 415 YFFLSQIAMEDDMKSNTTVMLLERLVECAVDSWEKQLAYHQLGVVMLERKEYKDAQRWFN 474
Query: 482 AAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMD 541
AAVEAGH+YSLVGVARTKFKR H+YSAYK++NSLISD+ GWM+QERSLYCSGKEK++D
Sbjct: 475 AAVEAGHLYSLVGVARTKFKRDHRYSAYKIINSLISDHKATGWMHQERSLYCSGKEKLLD 534
Query: 542 LNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALED 601
L+TATE DPTL++PYK+RA+ LVEEN+ AAI E+N+I+GFK SPDCLE+RAWISI +ED
Sbjct: 535 LDTATEFDPTLTFPYKFRAVALVEENQFGAAIAELNKILGFKASPDCLEMRAWISIGMED 594
Query: 602 YDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDI 661
Y+GAL+D+RALLTL+P++MMF ++HGD++VE L+PL QQWSQADCWMQLYDRWSSVDDI
Sbjct: 595 YEGALKDIRALLTLEPNFMMFNWKIHGDHMVELLRPLAQQWSQADCWMQLYDRWSSVDDI 654
Query: 662 GSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWI 721
GSLAVVHHMLANDPGKSLLRFRQSLLLLRLN QKAAMRSLRLARN+S SEHE+LVYEGWI
Sbjct: 655 GSLAVVHHMLANDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSKSEHERLVYEGWI 714
Query: 722 LYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSD 781
LYDTGHREEALAKAEESISIQRSFEAFFLKAYALADS+L+P+SS YVIQLL+EAL+CPSD
Sbjct: 715 LYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSTLDPDSSNYVIQLLQEALKCPSD 774
Query: 782 GLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEM 841
GLRKGQALNNLGSVYVDCEKLDLAADCY NAL IKHTRAHQGLARVYHLKNQRKAAYDEM
Sbjct: 775 GLRKGQALNNLGSVYVDCEKLDLAADCYTNALTIKHTRAHQGLARVYHLKNQRKAAYDEM 834
Query: 842 TKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEA 901
TKLIEKA+NNASAYEKRSEYCDR+MA+SDL +ATQLDP+RTYPYRYRAAVLMDDHKE+EA
Sbjct: 835 TKLIEKAQNNASAYEKRSEYCDREMAQSDLCLATQLDPLRTYPYRYRAAVLMDDHKESEA 894
Query: 902 IAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATER 961
I ELSRAI+FKPDLQLLHLRAAF+DSMG+ +DCEAALC+DP H DTLELY KA E
Sbjct: 895 IDELSRAISFKPDLQLLHLRAAFYDSMGEGASAIKDCEAALCIDPGHADTLELYHKARE- 953
Query: 962 VNEQQ 966
N+Q+
Sbjct: 954 PNDQK 958
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297819878|ref|XP_002877822.1| ethylene-overproduction protein 1 [Arabidopsis lyrata subsp. lyrata] gi|297323660|gb|EFH54081.1| ethylene-overproduction protein 1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1524 bits (3946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 736/958 (76%), Positives = 846/958 (88%), Gaps = 15/958 (1%)
Query: 13 MRSLKIIDGCKGTQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVGEKLLNHLQDH 72
MRSLK+ +GCKGTQV+A+N G GGGGG GG VG+KLL HL DH
Sbjct: 1 MRSLKLAEGCKGTQVYALN-----PSAPPPPPPPGNSGGGGGSGGTGGVGDKLLQHLSDH 55
Query: 73 LRVNSIRSKSNRSYQMP---VQAPVVIESVLPYGLPITDLLEPQIEPCLKFVDFVETLAD 129
LRVNS+RSKS+R+Y P A V E +LP GLP+TDLLEPQI+PCLKFVD V+ +A
Sbjct: 56 LRVNSVRSKSSRTYPPPSNQANALVSPEFLLPCGLPVTDLLEPQIDPCLKFVDLVDMMAQ 115
Query: 130 LYRRIEDCPQFEKSGVYLEQCAIFRGLSDPKLFRRSLRCARQHAVDVHTKIVLAAWLRFE 189
+YRRIE+C QFEKSG YLEQCAIFRG+SDPKLFRRSLR +RQHAVDVH K+VLA+WLRFE
Sbjct: 116 VYRRIENCSQFEKSGAYLEQCAIFRGISDPKLFRRSLRSSRQHAVDVHAKVVLASWLRFE 175
Query: 190 RREDELIGTSAMDCCGRNLECPKATMVSGYDPESVYDSCLCSRTARQEFRDDISMEDEEC 249
RREDELIGT++MDCCGRNLECPKAT+VSGYDPESVYD C+CS +R E M ++EC
Sbjct: 176 RREDELIGTTSMDCCGRNLECPKATLVSGYDPESVYDPCICSGASRSEM-----MNEDEC 230
Query: 250 STSDE-DWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEA 308
STS+E D+DMSFCIG++E+RCVRYKIASLSRPF+ MLYGGF E +R +NF+QNGISVE
Sbjct: 231 STSEEVDYDMSFCIGDEEVRCVRYKIASLSRPFKAMLYGGFREMKRATINFTQNGISVEG 290
Query: 309 MRAAEEFSRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEY 368
MRAAE FSRT LD+F P +VLELL ANRFCC+ELKSACDS+LA +V+ +++A++LIEY
Sbjct: 291 MRAAEIFSRTNRLDNFPPNVVLELLKLANRFCCDELKSACDSHLAHLVNSLDEAMLLIEY 350
Query: 369 GLEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARERLAMVGHASFVLYYFLSQI 428
GLEEAAYLLVAACLQ+ LRELP SM NPNV++ FCSAE RERLA +GHASF LY+FLSQI
Sbjct: 351 GLEEAAYLLVAACLQIFLRELPSSMHNPNVIKFFCSAEGRERLASLGHASFTLYFFLSQI 410
Query: 429 GMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH 488
ME+DMKSNTTVMLLERLVE A ++W+KQLA+HQLGVVMLER+EYKDAQ WF AAVEAGH
Sbjct: 411 AMEDDMKSNTTVMLLERLVECAVDNWEKQLAYHQLGVVMLERKEYKDAQRWFNAAVEAGH 470
Query: 489 IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATEL 548
+YSLVGVAR+KFKR H+YSAYK++NSLISD+ GWM+QERSLYCSGKEK++DL+TATEL
Sbjct: 471 LYSLVGVARSKFKRDHRYSAYKIINSLISDHKATGWMHQERSLYCSGKEKLLDLDTATEL 530
Query: 549 DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRD 608
DPTL++PYK+RA+ LVEEN+ AAI+E+N+I+GFK SPDCLE+RAWISI +EDY+GAL+D
Sbjct: 531 DPTLTFPYKFRAVALVEENQFGAAISELNKILGFKASPDCLEMRAWISIGMEDYEGALKD 590
Query: 609 VRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVH 668
+RALLTL+P++MMF ++HGD++VE L+PL QQWSQADCWMQLYDRWSSVDDIGSLAVVH
Sbjct: 591 IRALLTLEPNFMMFNWKIHGDHMVELLRPLAQQWSQADCWMQLYDRWSSVDDIGSLAVVH 650
Query: 669 HMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHR 728
HMLANDPGKSLLRFRQSLLLLRLN QKAAMRSLRLARN+S SEHE+LVYEGWILYDTGHR
Sbjct: 651 HMLANDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSKSEHERLVYEGWILYDTGHR 710
Query: 729 EEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQA 788
EEALAKAEESISIQRSFEAFFLKAYALADS+L+P+SS YVIQLL+EAL+CPSDGLRKGQA
Sbjct: 711 EEALAKAEESISIQRSFEAFFLKAYALADSTLDPDSSNYVIQLLQEALKCPSDGLRKGQA 770
Query: 789 LNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKA 848
LNNLGSVYVDCEKLDLAADCY NAL IKHTRAHQGLARVYHLKNQRKAA+DEMTKLIEKA
Sbjct: 771 LNNLGSVYVDCEKLDLAADCYTNALTIKHTRAHQGLARVYHLKNQRKAAFDEMTKLIEKA 830
Query: 849 RNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRA 908
+NNASAYEKRSEYCDR+MA+SDLS+ATQLDP+RTYPYRYRAAVLMDDHKE+EAI ELSRA
Sbjct: 831 QNNASAYEKRSEYCDREMAQSDLSLATQLDPLRTYPYRYRAAVLMDDHKESEAIDELSRA 890
Query: 909 IAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNEQQ 966
I+FKPDLQLLHLRAAF+DSMG+ +DCEAALC+DP H DTLELY KA E N+Q+
Sbjct: 891 ISFKPDLQLLHLRAAFYDSMGEGAAAIKDCEAALCIDPGHADTLELYHKARE-PNDQK 947
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|312282665|dbj|BAJ34198.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
Score = 1515 bits (3922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 733/962 (76%), Positives = 842/962 (87%), Gaps = 17/962 (1%)
Query: 5 MQQNFFTTMRSLKIIDGCKGTQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVGEK 64
MQ N FTTMRSLK+ +GCKGTQV+A+N S G GGGGG GG VG+K
Sbjct: 1 MQHNLFTTMRSLKLAEGCKGTQVYALNASA-------PPPPPPPGNGGGGGTGGGGVGDK 53
Query: 65 LLNHLQDHLRVNSIRSKSNRSYQMPVQAPVVI--ESVLPYGLPITDLLEPQIEPCLKFVD 122
L HLQDHLRVNS+RSKS+R+Y P Q+ V+ ES+LP GLP TDLLEPQI+PCLKFVD
Sbjct: 54 FLQHLQDHLRVNSVRSKSSRTYPPPNQSNAVVSPESLLPCGLPDTDLLEPQIDPCLKFVD 113
Query: 123 FVETLADLYRRIEDCPQFEKSGVYLEQCAIFRGLSDPKLFRRSLRCARQHAVDVHTKIVL 182
VE +A++YRRI++C QFEKSG YLEQCAIFRGLSDPKLFRRSLR +RQHAVDVH+K+VL
Sbjct: 114 LVEKMAEVYRRIDNCSQFEKSGAYLEQCAIFRGLSDPKLFRRSLRSSRQHAVDVHSKLVL 173
Query: 183 AAWLRFERREDELIGTSAMDCCGRNLECPKATMVSGYDPESVYDSCLCSRTARQEFR--D 240
A+WLRFERREDELIGTS+MDCCGRNLECPKAT+VS YDPE+VYD C+CS ++ E D
Sbjct: 174 ASWLRFERREDELIGTSSMDCCGRNLECPKATLVSRYDPETVYDPCVCSGASKSEMMNVD 233
Query: 241 DISMEDEECSTSDE--DWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVN 298
D+ ECSTS+E D+DMSFCIG++E+RCVRYKIASLSRPF+ MLYGGF E +R +N
Sbjct: 234 DVP----ECSTSEEELDYDMSFCIGDEEVRCVRYKIASLSRPFKAMLYGGFREMKRGTIN 289
Query: 299 FSQNGISVEAMRAAEEFSRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSD 358
F+ NGISVE MRAAE FSRTK LD+F P +VLELL ANRFCC+ELKSACDS+LA +V++
Sbjct: 290 FTHNGISVEGMRAAEVFSRTKRLDNFSPNVVLELLKLANRFCCDELKSACDSHLAYLVNN 349
Query: 359 IEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARERLAMVGHAS 418
+++A++LIEYGLEEAAYLLVAACLQV LRELP SM NPNV++IFCS E RERLA +GHAS
Sbjct: 350 LDEAMLLIEYGLEEAAYLLVAACLQVFLRELPSSMHNPNVIKIFCSVEGRERLASLGHAS 409
Query: 419 FVLYYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQN 478
F LY+FLSQI ME+DMKSNTTVM+LERLVE A E+W+KQLA+HQLGVVMLER+EYKDAQ
Sbjct: 410 FALYFFLSQIAMEDDMKSNTTVMVLERLVECAVENWEKQLAYHQLGVVMLERKEYKDAQR 469
Query: 479 WFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEK 538
WF AVE GH+YSLVGVAR+KFKR H+YSAYK++NSLISD+T GWM+QERSLYCSGKEK
Sbjct: 470 WFNTAVEVGHLYSLVGVARSKFKRDHRYSAYKIINSLISDHTATGWMHQERSLYCSGKEK 529
Query: 539 MMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIA 598
++DL+TATELDPTL++PYK+RA+ LVEEN+ AAI+E+N+I+GFK SPDCLE+RAWISI
Sbjct: 530 LLDLDTATELDPTLTFPYKFRAVALVEENQFGAAISELNKILGFKASPDCLEMRAWISIG 589
Query: 599 LEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSV 658
EDY+GAL+D+RALLTL+P++MMF ++H D++VE L+PL Q SQADCWMQL+D WSSV
Sbjct: 590 KEDYEGALKDIRALLTLEPNFMMFNSKIHADHMVELLRPLAHQRSQADCWMQLFDHWSSV 649
Query: 659 DDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYE 718
DDIGSLAVVH MLANDPG SLLRFRQSLLLLRLN QKAAMRSLRLARN+S +HE+LVYE
Sbjct: 650 DDIGSLAVVHDMLANDPGNSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSKLKHERLVYE 709
Query: 719 GWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRC 778
GWILYDTGHREEALAKAEESIS QRSFEAFFLKAYALADS+L+P+SS YVIQLLEEALRC
Sbjct: 710 GWILYDTGHREEALAKAEESISRQRSFEAFFLKAYALADSTLDPKSSDYVIQLLEEALRC 769
Query: 779 PSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAY 838
PSD LRKGQALNNLGSVYVDC+KLDLAADCY NALNIKHTRAHQGLARVYHLKNQRKAAY
Sbjct: 770 PSDALRKGQALNNLGSVYVDCDKLDLAADCYTNALNIKHTRAHQGLARVYHLKNQRKAAY 829
Query: 839 DEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKE 898
DEMTKLIEKA+NNASAYEKRSEYCDR+MA+SDLS+ATQLDP+RTYPYRYRAAVLMDDHKE
Sbjct: 830 DEMTKLIEKAQNNASAYEKRSEYCDREMAQSDLSLATQLDPLRTYPYRYRAAVLMDDHKE 889
Query: 899 AEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKA 958
+EAI ELSRAI+FKPDLQLLHLRAAF+DSMG+ +DCEAAL +DP H DTLELY KA
Sbjct: 890 SEAIDELSRAISFKPDLQLLHLRAAFYDSMGEGASAIKDCEAALSIDPGHADTLELYHKA 949
Query: 959 TE 960
E
Sbjct: 950 RE 951
|
Source: Thellungiella halophila Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225439486|ref|XP_002269998.1| PREDICTED: ethylene-overproduction protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1510 bits (3910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 754/962 (78%), Positives = 847/962 (88%), Gaps = 12/962 (1%)
Query: 5 MQQNFFTTMRSLKIIDGCKGTQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVGEK 64
MQ N FTTMRSLK+IDGCKGTQ++A+NPS + GGGGGGGG G GGG VGEK
Sbjct: 1 MQHNIFTTMRSLKLIDGCKGTQIYALNPSNT------TITGGGGGGGGVGVGGGGGVGEK 54
Query: 65 LLNHLQDHLRVNSIRSKSNRSYQMPVQAPVVIESVLPYGLPITDLLEPQIEPCLKFVDFV 124
LL+HL DHL VN+ R KSN++ Q V++++LP+GLP DLLEPQIEP LK V+FV
Sbjct: 55 LLHHLHDHLGVNTARYKSNQNCQ------AVVDTLLPHGLPKADLLEPQIEPYLKSVNFV 108
Query: 125 ETLADLYRRIEDCPQFEKSGVYLEQCAIFRGLSDPKLFRRSLRCARQHAVDVHTKIVLAA 184
ETLAD+YRR +C QFEKS YLEQCAIFRGL DPKLFRRSLR ARQHAVD H+K+V++A
Sbjct: 109 ETLADVYRRTANCLQFEKSEAYLEQCAIFRGLPDPKLFRRSLRLARQHAVDAHSKVVISA 168
Query: 185 WLRFERREDELIGTSAMDCCGRNLECPKATMVSGYDPESVYDSCLCSRTARQEFRDDISM 244
WL++ERREDELIGTSAM+CCGRN+ECPKA +VSGY+PESVYD C+CSRT +++ D+ S+
Sbjct: 169 WLKYERREDELIGTSAMECCGRNVECPKAALVSGYNPESVYDPCVCSRTPQEDVDDEGSV 228
Query: 245 EDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGI 304
EDEECSTS+ED DMSFCIG +E+RCVRY IA LSRPF+ MLYG F+ESRRE++NFS NGI
Sbjct: 229 EDEECSTSEEDGDMSFCIGEEEVRCVRYNIAGLSRPFKAMLYGSFVESRRERINFSHNGI 288
Query: 305 SVEAMRAAEEFSRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVM 364
S E MRAAE FSRTK +DSFDP++VLELLS AN+FCCEE+KSACD +LAS+V DIE A++
Sbjct: 289 SAEGMRAAEIFSRTKKVDSFDPKIVLELLSLANKFCCEEMKSACDVHLASLVGDIESAML 348
Query: 365 LIEYGLEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARERLAMVGHASFVLYYF 424
IEYGLEE AYLLVAACLQV LRELP S+ NPNV++ FCS EAR+RLA+VGHASF+L+YF
Sbjct: 349 FIEYGLEETAYLLVAACLQVFLRELPNSLNNPNVVKFFCSVEARKRLAVVGHASFLLFYF 408
Query: 425 LSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAV 484
LSQI ME+DMKSNTTVMLLERL E AT SWQKQL H LG VMLER EYKDAQ+WF+A+
Sbjct: 409 LSQIAMEDDMKSNTTVMLLERLGECATSSWQKQLVNHLLGCVMLERNEYKDAQHWFQASA 468
Query: 485 EAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNT 544
EAGH+YSLVG AR K++RGHK+SAYK MNSLISDYTPVGWMYQERSLYC GKEKMMDLNT
Sbjct: 469 EAGHVYSLVGFARAKYRRGHKFSAYKQMNSLISDYTPVGWMYQERSLYCLGKEKMMDLNT 528
Query: 545 ATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDG 604
ATELDPTLS+PY YRA+L+VE+ K+ AAI+EIN+IIGFKVS +CL LRAW SIA+EDYDG
Sbjct: 529 ATELDPTLSFPYMYRAVLMVEDKKIGAAISEINKIIGFKVSAECLALRAWFSIAMEDYDG 588
Query: 605 ALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSL 664
ALRDVRALLTL+P+YMMF G++ D LVE L+ QQW+QADCWMQLYDRWSSVDDIGSL
Sbjct: 589 ALRDVRALLTLEPNYMMFNGKMPADQLVELLRHHAQQWNQADCWMQLYDRWSSVDDIGSL 648
Query: 665 AVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYD 724
AVVH MLANDPG+SLL FRQSLLLLRLNSQKAAMRSLRLARNYS+SEHE+LVYEGWILYD
Sbjct: 649 AVVHQMLANDPGRSLLWFRQSLLLLRLNSQKAAMRSLRLARNYSSSEHERLVYEGWILYD 708
Query: 725 TGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLR 784
TGHREEALAKAEESISIQRSFEAFFLKAYALADSSL+ ESS YVI+LLEEAL+CPSDGLR
Sbjct: 709 TGHREEALAKAEESISIQRSFEAFFLKAYALADSSLDSESSLYVIELLEEALKCPSDGLR 768
Query: 785 KGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKL 844
KGQALNNLGSVYVDCE LD A CY+NAL IKHTRAHQGLARVYHLKNQRK AYDEMTKL
Sbjct: 769 KGQALNNLGSVYVDCENLDRARVCYINALTIKHTRAHQGLARVYHLKNQRKHAYDEMTKL 828
Query: 845 IEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAE 904
IEKARNNASAYEKRSEYCDRDMAK+DLSMATQLDP+RTYPYRYRAAVLMDDHKEAEAIAE
Sbjct: 829 IEKARNNASAYEKRSEYCDRDMAKNDLSMATQLDPLRTYPYRYRAAVLMDDHKEAEAIAE 888
Query: 905 LSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNE 964
L++AI FKPDLQLLHLRAAFHDSMGD + T RD EAALCLDP+H DTLEL +KA ER NE
Sbjct: 889 LTKAITFKPDLQLLHLRAAFHDSMGDFVSTLRDSEAALCLDPSHADTLELCNKAQERCNE 948
Query: 965 QQ 966
QQ
Sbjct: 949 QQ 950
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356496239|ref|XP_003516976.1| PREDICTED: ethylene-overproduction protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1491 bits (3859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 725/975 (74%), Positives = 832/975 (85%), Gaps = 34/975 (3%)
Query: 5 MQQNFFTTMRSLKIIDGCKGTQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVGEK 64
MQ N F +MRSLKI+DGCKGTQV+AINPS SA GGG +GEK
Sbjct: 1 MQHNIFASMRSLKIMDGCKGTQVYAINPS--------SATGGG-------------IGEK 39
Query: 65 LLNHLQDHLRVNSIRSKSNRSYQ-----MPVQAPVVIESVLPYGLPITDLLEPQIEPCLK 119
LL L DH++ +++R+KS R+ Q P + V S+LPYGLP+TDLLEP+IEP L
Sbjct: 40 LLQQLHDHIKSHTLRTKSVRNLQPPNMTTPSEVFVSDGSLLPYGLPMTDLLEPKIEPSLV 99
Query: 120 FVDFVETLADLYRRIEDCPQFEKSGVYLEQCAIFRGLSDPKLFRRSLRCARQHAVDVHTK 179
VDFVETLA +YRR ED QF++S VYLEQCA+F+GL+DPKLFRRSLR ARQHA++VH K
Sbjct: 100 SVDFVETLAGVYRRTEDRHQFDRSEVYLEQCAVFQGLADPKLFRRSLRAARQHAINVHAK 159
Query: 180 IVLAAWLRFERREDELIGTSAMDCCGRNLECPKATMVSGYDPESVYDSCLCS--RTARQE 237
+VL+AWLR+ERREDELIG+S MDC GRNLECP+ T+V GYDPE V+DSC C+ R +
Sbjct: 160 VVLSAWLRYERREDELIGSSLMDCSGRNLECPRTTLVPGYDPELVFDSCACTGARAGNGD 219
Query: 238 FRDDISME---DEECSTSDE---DWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIE 291
+D +M DE+CSTS+E D DMSFC+G+DEI+C R+ IASLSRPF+ MLYGGFIE
Sbjct: 220 NDNDDAMAIVVDEQCSTSEEEEEDGDMSFCVGDDEIKCNRFNIASLSRPFKIMLYGGFIE 279
Query: 292 SRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSY 351
S REK+NFS+N SVEA+RAAE FSR K L +P+++LELLS ANRFCCEE+K+ACD++
Sbjct: 280 STREKINFSRNCFSVEALRAAEVFSRRKRLSHLEPKVILELLSLANRFCCEEMKNACDAH 339
Query: 352 LASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARERL 411
LAS+V DI+DA++L+EYGLEE AYLLVAACLQV LRELP SMQ+ +V++IFCS E R+RL
Sbjct: 340 LASLVCDIDDALLLVEYGLEETAYLLVAACLQVFLRELPGSMQSLSVVKIFCSPEGRDRL 399
Query: 412 AMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLERE 471
A+ GHASFVLYYFLSQI MEE+M+SNTTVMLLERLVE A + W+KQ+AFH LGVVMLER+
Sbjct: 400 ALAGHASFVLYYFLSQIAMEEEMRSNTTVMLLERLVECAKDGWEKQVAFHLLGVVMLERK 459
Query: 472 EYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSL 531
EYKDAQ WF+AAV+AGH YSLVGVAR K+KRGH YSAYKLMNSLISD+ PVGWMYQERSL
Sbjct: 460 EYKDAQYWFQAAVDAGHAYSLVGVARAKYKRGHTYSAYKLMNSLISDHKPVGWMYQERSL 519
Query: 532 YCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLEL 591
YC GKEK+MDL +ATELDPTLS+PYK+RA+ +EENK+ AI EIN+IIGFKVSPDCLEL
Sbjct: 520 YCVGKEKLMDLMSATELDPTLSFPYKFRAVSFLEENKIGPAIAEINKIIGFKVSPDCLEL 579
Query: 592 RAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQL 651
RAW IA+EDY+GALRDVRA+LTLDP+YMMFYG +HGD LVE LQP VQQWSQADCW+QL
Sbjct: 580 RAWFLIAMEDYEGALRDVRAILTLDPNYMMFYGHMHGDQLVELLQPFVQQWSQADCWIQL 639
Query: 652 YDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE 711
YDRWSSVDDIGSLAVVH MLA DPGKSLL FRQSLLLLRLN K+AMRSLRLARN+STS+
Sbjct: 640 YDRWSSVDDIGSLAVVHQMLAKDPGKSLLCFRQSLLLLRLNCPKSAMRSLRLARNHSTSD 699
Query: 712 HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQL 771
HE+LVYEGWILYDTG+REEALAKAEESISI+RSFEA+FLKAYALADS+L+ ESS YVI L
Sbjct: 700 HERLVYEGWILYDTGYREEALAKAEESISIRRSFEAYFLKAYALADSNLDSESSKYVICL 759
Query: 772 LEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLK 831
LEEALRCP DGLRKGQALNNLGSVYVDC+KLDLAADCYMNALNIKHTRAHQGLARVYHLK
Sbjct: 760 LEEALRCPLDGLRKGQALNNLGSVYVDCDKLDLAADCYMNALNIKHTRAHQGLARVYHLK 819
Query: 832 NQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAV 891
N RKAAYDEMTKLIEKAR+NASAYEKRSEYCDRDMAKSDLSMA+QLDP+RTYPYRYRAAV
Sbjct: 820 NLRKAAYDEMTKLIEKARSNASAYEKRSEYCDRDMAKSDLSMASQLDPLRTYPYRYRAAV 879
Query: 892 LMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDT 951
LMDDHKEAEAI ELSRAI FKPDLQLLHLRAAF+DSMGD + RDCEAALCLDPNH +
Sbjct: 880 LMDDHKEAEAIEELSRAIDFKPDLQLLHLRAAFYDSMGDFVSAVRDCEAALCLDPNHNEI 939
Query: 952 LELYDKATERVNEQQ 966
L+L +KA E + E +
Sbjct: 940 LDLCNKAREHIREPK 954
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503093|ref|XP_003520346.1| PREDICTED: ethylene-overproduction protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1488 bits (3852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 722/975 (74%), Positives = 827/975 (84%), Gaps = 28/975 (2%)
Query: 5 MQQNFFTTMRSLKIIDGCKGTQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVGEK 64
MQ F TMRSLKI+DGCKGTQV+AINPSG G + +GEK
Sbjct: 1 MQHKIFATMRSLKIMDGCKGTQVYAINPSGAGGADGPTG---------------GGIGEK 45
Query: 65 LLNHLQDHLRVNSIRSKSNRSYQ-----MPVQAPVVIESVLPYGLPITDLLEPQIEPCLK 119
LL L DH++ ++R+KS R+ Q P + + S+LPYGL +TDLLEP+IEP L
Sbjct: 46 LLQQLHDHIKGQTLRTKSVRNLQATNHTTPSEVVLSDGSLLPYGLSMTDLLEPKIEPSLM 105
Query: 120 FVDFVETLADLYRRIEDCPQFEKSGVYLEQCAIFRGLSDPKLFRRSLRCARQHAVDVHTK 179
VDFVETLA ++RR DCPQF++S VYLEQCA+F+GL+DPKLFRRSLR ARQHAV VH K
Sbjct: 106 SVDFVETLAGVHRRTGDCPQFDRSEVYLEQCAVFQGLADPKLFRRSLRAARQHAVHVHAK 165
Query: 180 IVLAAWLRFERREDELIGTSAMDCCGRNLECPKATMVSGYDPESVYDSCLCSRT-ARQEF 238
+VLAAWLR ERREDELIG+S+ DC GRNLECP+AT+ GYDPESV+DSC C+R A
Sbjct: 166 VVLAAWLRHERREDELIGSSSSDCSGRNLECPRATLTPGYDPESVFDSCACTRAHAGNRD 225
Query: 239 RDDISME---DEECSTSDE----DWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIE 291
DD +M DE+CSTS+E D DMSF +G+DEI+C R+ IASLSRPF+TMLYGGF+E
Sbjct: 226 IDDDAMTIVVDEQCSTSEEEEEEDGDMSFFVGDDEIKCNRFNIASLSRPFKTMLYGGFVE 285
Query: 292 SRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSY 351
S +EK+NFS N SVEA+RAA+ FSRTK L +PR+VLELLS ANRFCC+E+K+ACD +
Sbjct: 286 SLKEKINFSGNCFSVEALRAADVFSRTKRLSHLEPRVVLELLSLANRFCCDEMKNACDVH 345
Query: 352 LASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARERL 411
LAS+V DI+DA++L+EYGLEE AYLLVAACLQV LRELP S+Q+ +V+++FCS E R+RL
Sbjct: 346 LASLVCDIDDALLLVEYGLEETAYLLVAACLQVFLRELPGSLQSSSVVKMFCSPEGRDRL 405
Query: 412 AMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLERE 471
A+ GH SFVLYYFLSQI MEE+M+SNTTVMLLERLVE AT+ W+KQ+AFH LGVVMLER+
Sbjct: 406 ALAGHVSFVLYYFLSQIAMEEEMRSNTTVMLLERLVECATDGWEKQIAFHLLGVVMLERK 465
Query: 472 EYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSL 531
EYKDAQ+WF+AAV+AGH+YSLVGVAR K+KRGH YSAYKLMNSLISD+ PVGWMYQERSL
Sbjct: 466 EYKDAQHWFQAAVDAGHVYSLVGVARAKYKRGHTYSAYKLMNSLISDHKPVGWMYQERSL 525
Query: 532 YCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLEL 591
YC GKEK+MDL +ATELDPTLS+PYK+RA+ ++ENK+ AI EIN+IIGF+VSPDCLEL
Sbjct: 526 YCVGKEKLMDLMSATELDPTLSFPYKFRAVSFLQENKIGPAIAEINKIIGFRVSPDCLEL 585
Query: 592 RAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQL 651
RAW IA+EDY+GALRDVRA+LTLDP+YMMFYG +HGD LVE LQP VQQWSQADCWMQL
Sbjct: 586 RAWFLIAMEDYEGALRDVRAILTLDPNYMMFYGHMHGDQLVELLQPAVQQWSQADCWMQL 645
Query: 652 YDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE 711
YDRWSSVDDIGSLAVVH MLANDPGKSLL FRQSLLLLRLN K+AMRSLRLARNYSTS+
Sbjct: 646 YDRWSSVDDIGSLAVVHQMLANDPGKSLLHFRQSLLLLRLNCPKSAMRSLRLARNYSTSD 705
Query: 712 HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQL 771
HE+LVYEGWILYDTGHREEALAKAEESISIQRSFEA+FLKAYALADS+L+ ESS YVI L
Sbjct: 706 HERLVYEGWILYDTGHREEALAKAEESISIQRSFEAYFLKAYALADSNLDSESSKYVISL 765
Query: 772 LEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLK 831
LEEALRCPSDGLRKGQALNNLGSVYVDC+KLDLAADCYMNALNIKHTRAHQGLARVYHLK
Sbjct: 766 LEEALRCPSDGLRKGQALNNLGSVYVDCDKLDLAADCYMNALNIKHTRAHQGLARVYHLK 825
Query: 832 NQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAV 891
N RKAAYDEMTKLIEKAR NASAYEKRSEYCDRDMAKSDL MA+QLDP+RTYPYRYRAAV
Sbjct: 826 NHRKAAYDEMTKLIEKARGNASAYEKRSEYCDRDMAKSDLGMASQLDPLRTYPYRYRAAV 885
Query: 892 LMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDT 951
LMDDHKE EAI ELSRAI FKPDLQLLHLRAAF+DS+GD + RDCEAALCLDPNH +
Sbjct: 886 LMDDHKEVEAIEELSRAIDFKPDLQLLHLRAAFYDSIGDFVFAVRDCEAALCLDPNHNEI 945
Query: 952 LELYDKATERVNEQQ 966
L+L +KA E + E +
Sbjct: 946 LDLCNKAREHIREPK 960
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357468583|ref|XP_003604576.1| hypothetical protein MTR_4g014680 [Medicago truncatula] gi|355505631|gb|AES86773.1| hypothetical protein MTR_4g014680 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1391 bits (3601), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 687/973 (70%), Positives = 800/973 (82%), Gaps = 48/973 (4%)
Query: 5 MQQNFFTTMRSLKIIDGCKG-TQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVGE 63
MQ N F TMRSLKI+DGCKG +QV+ SG + +GE
Sbjct: 1 MQHNIFATMRSLKIMDGCKGGSQVYHHRSSGGGS---------------------GGIGE 39
Query: 64 KLLNHLQDHLRVNSIRSKSNRSYQ---MPVQAP--VVIE-SVLPYGLPITDLLEPQIEPC 117
KLL L DH++ + R+KS ++ P Q P VV E S+LPYGLP+T+LL P+IEP
Sbjct: 40 KLLQQLHDHIKSQTFRTKSVHNFHNFPTPNQTPSEVVAEGSLLPYGLPMTELLAPKIEPV 99
Query: 118 LKFVDFVETLADLYRRIEDCPQFEKSGVYLEQCAIFRGLSDPKLFRRSLRCARQHAVDVH 177
L+ VDFVE LA L+ +IE+C E+S +YLE SLR A QH VDVH
Sbjct: 100 LRPVDFVERLAALHNKIENCLDVERSEIYLE----------------SLRSAGQHGVDVH 143
Query: 178 TKIVLAAWLRFERREDELIGTSAMDCCGRNLECPKATMVS-GYDPESVYDSCLCSRTARQ 236
+KIVLA+WLR++RREDELIG+S+MDCCGRN+ECPKAT+V+ GYDPE VYD C C R +
Sbjct: 144 SKIVLASWLRYDRREDELIGSSSMDCCGRNIECPKATLVANGYDPELVYDPCSCLRDCDE 203
Query: 237 EFRDDISMEDEECSTSDED---WDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESR 293
E D + +D++CST DED WD+SFCIG+DEIRC R+ +ASLSRPF+TMLYGGFIESR
Sbjct: 204 EEEDFMMFDDQQCSTPDEDDGGWDISFCIGDDEIRCGRFNMASLSRPFKTMLYGGFIESR 263
Query: 294 REKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLA 353
R +NFS+NG SVEAM+AAE FSRTK L + +P +VLELLS ANRFCCEE+K ACD+YLA
Sbjct: 264 RGTINFSRNGFSVEAMKAAEVFSRTKSLTTIEPNVVLELLSLANRFCCEEMKCACDTYLA 323
Query: 354 SMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARERLAM 413
S+VSD+EDA++LIEYGLEE AYLLVAACLQV+LRELP S+Q ++FCS E R+RLA
Sbjct: 324 SLVSDMEDALLLIEYGLEETAYLLVAACLQVVLRELPASLQCSGFAKLFCSPEGRDRLAA 383
Query: 414 VGHASFVLYYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEY 473
GHASFVLYYFLSQ+ MEE+M+SN TVML+ERLVE A + W+KQLAFHQ GVVM ER+EY
Sbjct: 384 AGHASFVLYYFLSQVAMEEEMRSNITVMLVERLVECAKDGWEKQLAFHQFGVVMFERKEY 443
Query: 474 KDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYC 533
KDAQ+WF+ AVEAGH+YSLVGVAR K++RGH Y+AYK+MNSLI+D+ PVGWMYQERSLYC
Sbjct: 444 KDAQHWFEVAVEAGHVYSLVGVARAKYRRGHTYAAYKIMNSLINDHKPVGWMYQERSLYC 503
Query: 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRA 593
GKEKMMDL +ATELDPTLS+PYKYRA+ L+EE+++ AI EIN++IGFK+SPDCLELRA
Sbjct: 504 FGKEKMMDLISATELDPTLSFPYKYRAVSLLEESRIGPAIAEINKLIGFKLSPDCLELRA 563
Query: 594 WISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYD 653
W IA+E+Y+GALRDVRA+LTLDP+YMMFYG +HG++LVE L P+VQQ + ADCWMQLYD
Sbjct: 564 WFLIAMEEYEGALRDVRAILTLDPNYMMFYGNMHGNHLVELLSPVVQQCNLADCWMQLYD 623
Query: 654 RWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHE 713
RWSSVDDIGSLAVVH ML NDPGKSLLRFRQSLLLLRLN QKAAMRSLRLARN+STS+HE
Sbjct: 624 RWSSVDDIGSLAVVHQMLENDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSTSDHE 683
Query: 714 KLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLE 773
+LVYEGWILYDTGHRE AL KAEESISIQRSFEA+FLKAYALAD++L+ ESS YVI LLE
Sbjct: 684 RLVYEGWILYDTGHREAALEKAEESISIQRSFEAYFLKAYALADTNLDSESSEYVIHLLE 743
Query: 774 EALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQ 833
EALRCPSDGLRKGQALNNLGSVYVDC+KLDLAADCYMNALNIKHTRAHQGLARVYHLK Q
Sbjct: 744 EALRCPSDGLRKGQALNNLGSVYVDCDKLDLAADCYMNALNIKHTRAHQGLARVYHLKRQ 803
Query: 834 RKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLM 893
K AYDEMTKLIEKA NNASAYEKRSEYC RDMAKSDLSM+T LDP+RTYPYRYRAAVLM
Sbjct: 804 SKDAYDEMTKLIEKAWNNASAYEKRSEYCGRDMAKSDLSMSTHLDPLRTYPYRYRAAVLM 863
Query: 894 DDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLE 953
DDHKEAEAI ELSRAI FKPDLQLL+LRAAF+ S+ D + RDCEAALCLDP + +TLE
Sbjct: 864 DDHKEAEAIEELSRAIEFKPDLQLLNLRAAFYHSINDFASSIRDCEAALCLDPGNAETLE 923
Query: 954 LYDKATERVNEQQ 966
Y+KA E + +Q+
Sbjct: 924 TYNKAQEDIKKQK 936
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 967 | ||||||
| TAIR|locus:2074343 | 959 | ETO1 "ETHYLENE OVERPRODUCER 1" | 0.988 | 0.996 | 0.749 | 0.0 | |
| TAIR|locus:2132402 | 888 | EOL1 "ETO1-like 1" [Arabidopsi | 0.859 | 0.935 | 0.516 | 2.1e-228 | |
| GENEDB_PFALCIPARUM|PF14_0324 | 564 | PF14_0324 "hypothetical protei | 0.255 | 0.437 | 0.236 | 1.6e-07 | |
| UNIPROTKB|Q8ILC1 | 564 | PF14_0324 "STI1-like protein" | 0.255 | 0.437 | 0.236 | 1.6e-07 | |
| UNIPROTKB|Q74DZ8 | 266 | GSU1166 "TPR domain protein" [ | 0.126 | 0.458 | 0.289 | 0.00012 | |
| TIGR_CMR|GSU_1166 | 266 | GSU_1166 "TPR domain protein" | 0.126 | 0.458 | 0.289 | 0.00012 | |
| WB|WBGene00003858 | 1151 | ogt-1 [Caenorhabditis elegans | 0.215 | 0.180 | 0.256 | 0.00056 | |
| UNIPROTKB|O18158 | 1151 | ogt-1 "UDP-N-acetylglucosamine | 0.215 | 0.180 | 0.256 | 0.00056 | |
| FB|FBgn0030228 | 722 | BTBD9 "BTB (POZ) domain contai | 0.144 | 0.193 | 0.240 | 0.00086 |
| TAIR|locus:2074343 ETO1 "ETHYLENE OVERPRODUCER 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3832 (1354.0 bits), Expect = 0., P = 0.
Identities = 723/965 (74%), Positives = 827/965 (85%)
Query: 5 MQQNFFTTMRSLKIIDGCKGTQVFAINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEK 64
MQ N FTTMRSLK+ +GCKGTQV+A+N VG+K
Sbjct: 1 MQHNLFTTMRSLKLAEGCKGTQVYALNPSAPTPPPPPGNSSSGGGGGGGSGGGTGGVGDK 60
Query: 65 LLNHLQDHLRVNSIRSKSNRSYQMPVQAPVVI--ESVLPYGLPITDLLEPQIEPCLKFVD 122
LL HL DHLRVNS+RSKS+R+Y P Q V+ E +LP GLP+TDLLEPQI+PCLKFVD
Sbjct: 61 LLQHLSDHLRVNSVRSKSSRTYPPPTQPNAVVSPEFLLPCGLPVTDLLEPQIDPCLKFVD 120
Query: 123 FVETLADLYRRIEDCPQFEKSGVYLEQCAIFRGLSDPKLFRRSLRCARQHAVDVHTKIVL 182
VE +A +YRRIE+C QFEKSG YLEQCAIFRG+SDPKLFRRSLR +RQHAVDVH K+VL
Sbjct: 121 LVEKMAQVYRRIENCSQFEKSGAYLEQCAIFRGISDPKLFRRSLRSSRQHAVDVHAKVVL 180
Query: 183 AAWLRFERREDELIGTSAMDCCGRNLECPKATMVSGYDPESVYDSCLCSRTARQEFRDDI 242
A+WLRFERREDELIGT++MDCCGRNLECPKAT+VSGYDPESVYD C+CS +R E
Sbjct: 181 ASWLRFERREDELIGTTSMDCCGRNLECPKATLVSGYDPESVYDPCVCSGASRSEM---- 236
Query: 243 SMEDEECSTSDE-DWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQ 301
M ++ECSTS E D+DMSFCIG++E+RCVRYKIASLSRPF+ MLYGGF E +R +NF+Q
Sbjct: 237 -MNEDECSTSQEVDYDMSFCIGDEEVRCVRYKIASLSRPFKAMLYGGFREMKRATINFTQ 295
Query: 302 NGISVEAMRAAEEFSRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIED 361
NGISVE MRAAE FSRT LD+F P +VLELL ANRFCC+ELKSACDS+LA +V+ +++
Sbjct: 296 NGISVEGMRAAEIFSRTNRLDNFPPNVVLELLKLANRFCCDELKSACDSHLAHLVNSLDE 355
Query: 362 AVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARERLAMVGHASFVL 421
A++LIEYGLEEAAYLLVAACLQV LRELP SM NPNV++IFCSAE RERLA +GHASF L
Sbjct: 356 AMLLIEYGLEEAAYLLVAACLQVFLRELPSSMHNPNVIKIFCSAEGRERLASLGHASFTL 415
Query: 422 YYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFK 481
Y+FLSQI ME+DMKSNTTVMLLERLVE A +SW+KQLA+HQLGVVMLER+EYKDAQ WF
Sbjct: 416 YFFLSQIAMEDDMKSNTTVMLLERLVECAVDSWEKQLAYHQLGVVMLERKEYKDAQRWFN 475
Query: 482 AAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMD 541
AAVEAGH+YSLVGVARTKFKR H+YSAYK++NSLISD+ GWM+QERSLYCSGKEK++D
Sbjct: 476 AAVEAGHLYSLVGVARTKFKRDHRYSAYKIINSLISDHKATGWMHQERSLYCSGKEKLLD 535
Query: 542 LNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALED 601
L+TATE DPTL++PYK+RA+ LVEEN+ AAI E+N+I+GFK SPDCLE+RAWISI +ED
Sbjct: 536 LDTATEFDPTLTFPYKFRAVALVEENQFGAAIAELNKILGFKASPDCLEMRAWISIGMED 595
Query: 602 YDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDI 661
Y+GAL+D+RALLTL+P++MMF ++HGD++VE L+PL QQWSQADCWMQLYDRWSSVDDI
Sbjct: 596 YEGALKDIRALLTLEPNFMMFNWKIHGDHMVELLRPLAQQWSQADCWMQLYDRWSSVDDI 655
Query: 662 GSLAVVHHMLANDPGKXXXXXXXXXXXXXXXXQKAAMRSLRLARNYSTSEHEKLVYEGWI 721
GSLAVVHHMLANDPGK QKAAMRSLRLARN+S SEHE+LVYEGWI
Sbjct: 656 GSLAVVHHMLANDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSKSEHERLVYEGWI 715
Query: 722 LYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSD 781
LYDTGHREEALAKAEESISIQRSFEAFFLKAYALADS+L+P+SS YVIQLL+EAL+CPSD
Sbjct: 716 LYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSTLDPDSSNYVIQLLQEALKCPSD 775
Query: 782 GLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEM 841
GLRKGQALNNLGSVYVDCEKLDLAADCY NAL IKHTRAHQGLARVYHLKNQRKAAYDEM
Sbjct: 776 GLRKGQALNNLGSVYVDCEKLDLAADCYTNALTIKHTRAHQGLARVYHLKNQRKAAYDEM 835
Query: 842 TKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEA 901
TKLIEKA+NNASAYEKRSEYCDR+MA+SDL +ATQLDP+RTYPYRYRAAVLMDDHKE+EA
Sbjct: 836 TKLIEKAQNNASAYEKRSEYCDREMAQSDLCLATQLDPLRTYPYRYRAAVLMDDHKESEA 895
Query: 902 IAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATER 961
I ELSRAI+FKPDLQLLHLRAAF+DSMG+ +DCEAALC+DP H DTLELY KA E
Sbjct: 896 IDELSRAISFKPDLQLLHLRAAFYDSMGEGASAIKDCEAALCIDPGHADTLELYHKAREP 955
Query: 962 VNEQQ 966
N+Q+
Sbjct: 956 -NDQK 959
|
|
| TAIR|locus:2132402 EOL1 "ETO1-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2204 (780.9 bits), Expect = 2.1e-228, P = 2.1e-228
Identities = 438/848 (51%), Positives = 588/848 (69%)
Query: 111 EPQIEPCLKFVDFVETLADLYRRIEDCPQFEKSGVYLEQCAIFRGLSDPKLFRRSLRCAR 170
EPQI P K +D+VE LA ++ ++ CP E+S +YL Q +FRGL + KL RRSL+ A
Sbjct: 51 EPQILPHYKPLDYVEVLAQIHEELDTCPLQERSILYLLQYQVFRGLGETKLRRRSLQSAW 110
Query: 171 QHAVDVHTKIVLAAWLRFERREDELIGTSAMDCCGRNLECPKATMVSGYDPESVYDSCLC 230
Q A VH K+V +WLR+E++ +E+I T + CG+ E ++ Y P + S
Sbjct: 111 QEATTVHEKVVFGSWLRYEKQGEEVI-TDLLSSCGKYSEEFVPLDIASYFPATTASS--- 166
Query: 231 SRTARQEFRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFI 290
A + +S ++ F IG ++I C R KIASLS PF MLYG F
Sbjct: 167 PEAASVKTNRSVSK------------NVVFKIGEEKIACQRRKIASLSAPFHAMLYGNFT 214
Query: 291 ESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVLELLSFANRFCCEELKSACDS 350
ES ++++ S+N +S AMR +FS +L L+LE+L FAN+FCCE LK ACD
Sbjct: 215 ESLLDEIDMSENHVSSSAMRVVRDFSVVGVLIGVSKNLLLEVLVFANKFCCERLKDACDR 274
Query: 351 YLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARER 410
LAS++S +E A+ L+++ LEE + +L ++CLQV L E+P S+ + V+ + +
Sbjct: 275 ELASLISSMECAIELMDFALEENSPILASSCLQVFLYEMPDSLNDERVVEVLTRVNRSQV 334
Query: 411 LAMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLER 470
M G A F LY LS++ M D +S+ T+ LE+LV+ A Q+ L FH+LG + L R
Sbjct: 335 STMAGKAPFSLYSCLSEVSMCIDPRSDRTLGFLEKLVDFAENDRQQVLGFHRLGCMRLLR 394
Query: 471 EEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTP-VGWMYQER 529
+EY++A+ F+ A GH+YS G+AR + +GH+ AY+ ++S+IS +P +GWMYQER
Sbjct: 395 KEYREAEEAFETAFNLGHVYSATGLARLGYIQGHRLWAYEKLSSVISSVSPPLGWMYQER 454
Query: 530 SLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCL 589
S YC G +K+ DL ATELDPTL+YPY YRA+ + + AA+ EINRI+GFK++ +CL
Sbjct: 455 SFYCEGDKKLEDLEKATELDPTLTYPYMYRAVTRMSKQNAKAALEEINRILGFKLALECL 514
Query: 590 ELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWM 649
E+R + + ++DY+ ALRD++A LTL P Y MF G++ G L + V+ W+ ADCWM
Sbjct: 515 EIRFCLYLGMDDYEAALRDIQAALTLCPDYRMFDGKVAGRQLQTLVYEHVENWTTADCWM 574
Query: 650 QLYDRWSSVDDIGSLAVVHHMLANDPGKXXXXXXXXXXXXXXXXQKAAMRSLRLARNYST 709
QLY++WS+VDDIGSL+V++ ML +D K +AAMRSL+LAR +++
Sbjct: 575 QLYEKWSNVDDIGSLSVIYQMLESDACKGVLYFRQSLLLLRLNCPEAAMRSLQLAREHAS 634
Query: 710 SEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVI 769
S+HE+LVYEGWILYDTGH EE L KA+ESI I+RSFEA+FL+AYALA+SSL+P SS+ V+
Sbjct: 635 SDHERLVYEGWILYDTGHCEEGLQKAKESIGIKRSFEAYFLQAYALAESSLDPSSSSTVV 694
Query: 770 QLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYH 829
LLE+AL+CPSD LRKGQALNNLGSVYVDCEKLDLAADCY+NAL ++HTRAHQGLARV+
Sbjct: 695 SLLEDALKCPSDRLRKGQALNNLGSVYVDCEKLDLAADCYINALKVRHTRAHQGLARVHF 754
Query: 830 LKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRA 889
L+N + AAY+EMT+LIEKA+NNASAYEKRSEYCDR++AKSDL M T+LDP+R YPYRYRA
Sbjct: 755 LRNDKAAAYEEMTRLIEKAQNNASAYEKRSEYCDRELAKSDLEMVTRLDPLRVYPYRYRA 814
Query: 890 AVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHT 949
AVLMD KE EAI ELSRAIAFK DL LLHLRAAFH+ +GD RDC AAL +DPNH
Sbjct: 815 AVLMDSRKEREAITELSRAIAFKADLHLLHLRAAFHEHIGDVTSALRDCRAALSVDPNHQ 874
Query: 950 DTLELYDK 957
+ LEL+ +
Sbjct: 875 EMLELHSR 882
|
|
| GENEDB_PFALCIPARUM|PF14_0324 PF14_0324 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 156 (60.0 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 61/258 (23%), Positives = 113/258 (43%)
Query: 711 EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYV-I 769
EH KL +G Y +EAL + EE+I I + + A+ N + + +
Sbjct: 245 EH-KL--KGNEFYKQKKFDEALKEYEEAIQINPNDIMYHYNKAAVHIEMKNYDKAVETCL 301
Query: 770 QLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYH 829
+E ++ ++ + N L Y++ +K DLA + Y +L + RA + +
Sbjct: 302 YAIENRYNFKAEFIQVAKLYNRLAISYINMKKYDLAIEAYRKSLVEDNNRATRNALKELE 361
Query: 830 LKNQR--KAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRY 887
+ ++ K AY + K E+ +N + Y K +++ + AK + A + +P Y
Sbjct: 362 RRKEKEEKEAYIDPDKA-EEHKNKGNEYFKNNDFPN---AKKEYDEAIRRNPNDAKLYSN 417
Query: 888 RAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAA-FHDSMGDHLHTQRDCEAALCLDP 946
RAA L + A+ ++ +AI P + R H M D+ + L LDP
Sbjct: 418 RAAALTKLIEYPSALEDVMKAIELDPTFVKAYSRKGNLHFFMKDYYKALQAYNKGLELDP 477
Query: 947 NHTDTLELYDKATERVNE 964
N+ + LE Y + +++E
Sbjct: 478 NNKECLEGYQRCAFKIDE 495
|
|
| UNIPROTKB|Q8ILC1 PF14_0324 "STI1-like protein" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 156 (60.0 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 61/258 (23%), Positives = 113/258 (43%)
Query: 711 EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYV-I 769
EH KL +G Y +EAL + EE+I I + + A+ N + + +
Sbjct: 245 EH-KL--KGNEFYKQKKFDEALKEYEEAIQINPNDIMYHYNKAAVHIEMKNYDKAVETCL 301
Query: 770 QLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYH 829
+E ++ ++ + N L Y++ +K DLA + Y +L + RA + +
Sbjct: 302 YAIENRYNFKAEFIQVAKLYNRLAISYINMKKYDLAIEAYRKSLVEDNNRATRNALKELE 361
Query: 830 LKNQR--KAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRY 887
+ ++ K AY + K E+ +N + Y K +++ + AK + A + +P Y
Sbjct: 362 RRKEKEEKEAYIDPDKA-EEHKNKGNEYFKNNDFPN---AKKEYDEAIRRNPNDAKLYSN 417
Query: 888 RAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAA-FHDSMGDHLHTQRDCEAALCLDP 946
RAA L + A+ ++ +AI P + R H M D+ + L LDP
Sbjct: 418 RAAALTKLIEYPSALEDVMKAIELDPTFVKAYSRKGNLHFFMKDYYKALQAYNKGLELDP 477
Query: 947 NHTDTLELYDKATERVNE 964
N+ + LE Y + +++E
Sbjct: 478 NNKECLEGYQRCAFKIDE 495
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| UNIPROTKB|Q74DZ8 GSU1166 "TPR domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 107 (42.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 37/128 (28%), Positives = 57/128 (44%)
Query: 784 RKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKNQRKAAYDEM 841
R N+G VY E+ A + + AL I A+ GL ++ +R+ A D
Sbjct: 105 RNADGYVNIGLVYNSLEETSKAIEAFEKALEIDPANVFAYNGLGDAWYGLGEREKAIDAF 164
Query: 842 TKLIEKARNNASAYEKRSE-YCD---RDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK 897
K IE +A+A+ E Y D + A+ + A +LDP T Y ++ MDD +
Sbjct: 165 RKGIELDPTDAAAHFNLGELYYDLGETEEAEKECLEAVRLDPDFTMSYLTLGSLYMDDER 224
Query: 898 EAEAIAEL 905
+AI L
Sbjct: 225 VKDAIRYL 232
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| TIGR_CMR|GSU_1166 GSU_1166 "TPR domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 107 (42.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 37/128 (28%), Positives = 57/128 (44%)
Query: 784 RKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKNQRKAAYDEM 841
R N+G VY E+ A + + AL I A+ GL ++ +R+ A D
Sbjct: 105 RNADGYVNIGLVYNSLEETSKAIEAFEKALEIDPANVFAYNGLGDAWYGLGEREKAIDAF 164
Query: 842 TKLIEKARNNASAYEKRSE-YCD---RDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK 897
K IE +A+A+ E Y D + A+ + A +LDP T Y ++ MDD +
Sbjct: 165 RKGIELDPTDAAAHFNLGELYYDLGETEEAEKECLEAVRLDPDFTMSYLTLGSLYMDDER 224
Query: 898 EAEAIAEL 905
+AI L
Sbjct: 225 VKDAIRYL 232
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| WB|WBGene00003858 ogt-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 0.00056, P = 0.00056
Identities = 58/226 (25%), Positives = 98/226 (43%)
Query: 696 AAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF-EAFFLKAYA 754
A +R+L L+ N++ H L + Y+ G + A+ +++I +Q F +A+ A A
Sbjct: 351 AYLRALNLSGNHAVV-HGNLAC---VYYEQGLIDLAIDTYKKAIDLQPHFPDAYCNLANA 406
Query: 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN 814
L + E+ ++ LE CP+ + NNL ++ + K++ A Y+ AL
Sbjct: 407 LKEKGSVVEAEQMYMKALE---LCPTHA----DSQNNLANIKREQGKIEDATRLYLKALE 459
Query: 815 I--KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS----EYCDRDMAK 868
I + AH LA + + + A + I A A AY E D A
Sbjct: 460 IYPEFAAAHSNLASILQQQGKLNDAILHYKEAIRIAPTFADAYSNMGNTLKEMGDSSAAI 519
Query: 869 SDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914
+ + A Q++P + A++ D AEAI S A+ KPD
Sbjct: 520 ACYNRAIQINPAFADAHSNLASIHKDAGNMAEAIQSYSTALKLKPD 565
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| UNIPROTKB|O18158 ogt-1 "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 0.00056, P = 0.00056
Identities = 58/226 (25%), Positives = 98/226 (43%)
Query: 696 AAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF-EAFFLKAYA 754
A +R+L L+ N++ H L + Y+ G + A+ +++I +Q F +A+ A A
Sbjct: 351 AYLRALNLSGNHAVV-HGNLAC---VYYEQGLIDLAIDTYKKAIDLQPHFPDAYCNLANA 406
Query: 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN 814
L + E+ ++ LE CP+ + NNL ++ + K++ A Y+ AL
Sbjct: 407 LKEKGSVVEAEQMYMKALE---LCPTHA----DSQNNLANIKREQGKIEDATRLYLKALE 459
Query: 815 I--KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS----EYCDRDMAK 868
I + AH LA + + + A + I A A AY E D A
Sbjct: 460 IYPEFAAAHSNLASILQQQGKLNDAILHYKEAIRIAPTFADAYSNMGNTLKEMGDSSAAI 519
Query: 869 SDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914
+ + A Q++P + A++ D AEAI S A+ KPD
Sbjct: 520 ACYNRAIQINPAFADAHSNLASIHKDAGNMAEAIQSYSTALKLKPD 565
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| FB|FBgn0030228 BTBD9 "BTB (POZ) domain containing 9 ortholog" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 0.00086, P = 0.00086
Identities = 37/154 (24%), Positives = 75/154 (48%)
Query: 240 DDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNF 299
D S + +++ D+ F + + I R +A+ S FR +LYGG E+ + ++
Sbjct: 30 DRFSADMARLCMNEQYADVEFIVEEERIPAHRVILAARSEYFRALLYGGMAETTQRQIPL 89
Query: 300 SQNGISVEAMRAAEEF--SRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVS 357
+ +EA + + S T +L + D +++L AN++ ++L+ A +YL ++
Sbjct: 90 E---VPLEAFKVLLRYIYSGTLLLSTLDEDSTIDVLGMANQYGFQDLEMAISNYLRQYLA 146
Query: 358 DIEDAVMLIE----YGLEEAAYLLVAACLQVLLR 387
+++ M+++ Y LEE L CL + R
Sbjct: 147 -LDNVCMILDAARLYNLEE----LTEVCLMFMDR 175
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.134 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 967 922 0.00091 122 3 11 22 0.50 33
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 629 (67 KB)
Total size of DFA: 469 KB (2220 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 84.37u 0.12s 84.49t Elapsed: 00:00:04
Total cpu time: 84.37u 0.12s 84.49t Elapsed: 00:00:04
Start: Fri May 10 13:07:14 2013 End: Fri May 10 13:07:18 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O65020 | ETO1_ARATH | No assigned EC number | 0.7784 | 0.9803 | 0.9968 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | ETO1 | ETO1 (ETHYLENE OVERPRODUCER 1); protein binding, bridging; Encodes a negative regulator of 1-aminocyclopropane-1-carboxylic acid synthase5(ACS5), which catalyze the rate-limiting step in ethylene biosynthesis. ETO1 directly interacts with ACS5 and inhibits its enzyme activity and targets it for degradation via proteasome-dependent pathway. It also interacts with CUL3 (a component of ubiquitin ligase complexes). eto1 (and eto3) mutations elevate ethylene biosynthesis by affecting the posttranscriptional regulation of ACS ; Essential regulator of the ethylene pathway, which acts by regul [...] (959 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | ATCUL3 | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3); protein binding / ubiquitin-protein ligase; Cullin, put [...] (732 aa) | • | • | • | 0.990 | |||||
 | ACS5 | ACS5 (ACC SYNTHASE 5); 1-aminocyclopropane-1-carboxylate synthase; 1-aminocyclopropane-1-carbox [...] (470 aa) | • | • | 0.983 | ||||||
 | ACS9 | ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9); 1-aminocyclopropane-1-carboxylate synthase [...] (470 aa) | • | 0.966 | |||||||
 | ACS4 | ACS4 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4); 1-aminocyclopropane-1-carboxylate synthase [...] (474 aa) | • | • | 0.910 | ||||||
 | CUL4 | CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase; Arabidopsis CULLIN4 (CUL4) forms an [...] (792 aa) | • | • | 0.892 | ||||||
 | EIN2 | EIN2 (ETHYLENE INSENSITIVE 2); transporter; Involved in ethylene signal transduction. Acts down [...] (1294 aa) | • | 0.883 | |||||||
 | ETR1 | ETR1 (ETHYLENE RESPONSE 1); ethylene binding / protein histidine kinase/ two-component response [...] (738 aa) | • | 0.875 | |||||||
 | EIN3 | EIN3 (ETHYLENE-INSENSITIVE3); transcription factor; ethylene-insensitive3 ; Probable transcript [...] (628 aa) | • | 0.790 | |||||||
 | CTR1 | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1); kinase/ protein binding / protein serine/threonine kinas [...] (821 aa) | • | 0.788 | |||||||
 | EIN4 | EIN4 (ETHYLENE INSENSITIVE 4); ethylene binding / glycogen synthase kinase 3/ protein histidine [...] (766 aa) | • | 0.716 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 967 | |||
| smart00225 | 97 | smart00225, BTB, Broad-Complex, Tramtrack and Bric | 1e-09 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 7e-07 | |
| pfam12810 | 248 | pfam12810, Gly_rich, Glycine rich protein | 5e-06 | |
| pfam07172 | 91 | pfam07172, GRP, Glycine rich protein family | 4e-05 | |
| pfam10961 | 91 | pfam10961, DUF2763, Protein of unknown function (D | 5e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 5e-05 | |
| pfam07172 | 91 | pfam07172, GRP, Glycine rich protein family | 6e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 9e-05 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 9e-05 | |
| pfam07172 | 91 | pfam07172, GRP, Glycine rich protein family | 1e-04 | |
| pfam07172 | 91 | pfam07172, GRP, Glycine rich protein family | 1e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-04 | |
| PLN03138 | 796 | PLN03138, PLN03138, Protein TOC75; Provisional | 1e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-04 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 3e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-04 | |
| pfam12810 | 248 | pfam12810, Gly_rich, Glycine rich protein | 4e-04 | |
| pfam07172 | 91 | pfam07172, GRP, Glycine rich protein family | 4e-04 | |
| pfam07172 | 91 | pfam07172, GRP, Glycine rich protein family | 4e-04 | |
| pfam07172 | 91 | pfam07172, GRP, Glycine rich protein family | 4e-04 | |
| pfam07172 | 91 | pfam07172, GRP, Glycine rich protein family | 4e-04 | |
| PLN03134 | 144 | PLN03134, PLN03134, glycine-rich RNA-binding prote | 4e-04 | |
| pfam07172 | 91 | pfam07172, GRP, Glycine rich protein family | 5e-04 | |
| PRK07772 | 186 | PRK07772, PRK07772, single-stranded DNA-binding pr | 5e-04 | |
| pfam12810 | 248 | pfam12810, Gly_rich, Glycine rich protein | 6e-04 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 6e-04 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 6e-04 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 8e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 9e-04 | |
| pfam07172 | 91 | pfam07172, GRP, Glycine rich protein family | 0.001 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 0.001 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 0.001 | |
| PRK07772 | 186 | PRK07772, PRK07772, single-stranded DNA-binding pr | 0.001 | |
| PHA00370 | 297 | PHA00370, III, attachment protein | 0.001 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.002 | |
| pfam07172 | 91 | pfam07172, GRP, Glycine rich protein family | 0.002 | |
| pfam07172 | 91 | pfam07172, GRP, Glycine rich protein family | 0.002 | |
| PHA00370 | 297 | PHA00370, III, attachment protein | 0.002 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 0.002 | |
| PRK06958 | 182 | PRK06958, PRK06958, single-stranded DNA-binding pr | 0.002 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 0.003 | |
| pfam09579 | 81 | pfam09579, Spore_YtfJ, Sporulation protein YtfJ (S | 0.003 | |
| smart00157 | 218 | smart00157, PRP, Major prion protein | 0.003 | |
| PRK07772 | 186 | PRK07772, PRK07772, single-stranded DNA-binding pr | 0.004 | |
| PHA00370 | 297 | PHA00370, III, attachment protein | 0.004 |
| >gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-09
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 257 DMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFS 316
D++ +G + + +A+ S F+ + F ES + ++ +S E RA F
Sbjct: 1 DVTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLD--DVSPEDFRALLNFL 58
Query: 317 RTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLAS 354
T LD V ELL A+ L C+ +L
Sbjct: 59 YTGKLD-LPEENVEELLELADYLQIPGLVELCEEFLLK 95
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Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 7e-07
Identities = 80/475 (16%), Positives = 158/475 (33%), Gaps = 59/475 (12%)
Query: 404 SAEARERLAMV----GHASFVLYYFLSQIGMEEDMKSNTTVMLLERL-------VESATE 452
+A AR +L + G S + + ++ ++ +++L L +A +
Sbjct: 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAK 455
Query: 453 SWQKQ-----LAFHQLGVVMLEREEYKDAQNWFKAA--VEAGHIYSLVGVARTKFKRGHK 505
+K+ + LG + L + + A+ F+ A +E + +AR + G+
Sbjct: 456 KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNP 515
Query: 506 YSAYKLMNS-LISDYTPVGWMYQERSLYC-SGKEKMMD--LNTATELDPTLSYPYKYRAI 561
A + L D + + LY +G E+ L A EL+P P A
Sbjct: 516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQ 575
Query: 562 LLVEENKLAAAITEINRIIG-FKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSYM 620
+ + +L A+ +N SP+ + +A D + A+ + LL L P
Sbjct: 576 YYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-- 633
Query: 621 MFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLL 680
L+ + Y ++ + L P +
Sbjct: 634 ------SALALLLLAD---AYAVMKN-----YA--------KAITSLKRALELKPDNTEA 671
Query: 681 RFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESIS 740
+ + LLL ++A + + + EG + A+ +++
Sbjct: 672 QIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731
Query: 741 IQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCE 800
S + AL S E+ ++ LE L+ + L +Y+ +
Sbjct: 732 RAPSSQNAIKLHRALLASGNTAEA----VKTLEAWLKTHPNDAV---LRTALAELYLAQK 784
Query: 801 KLDLAADCYMNALNI--KHTRAHQGLARVYH-LKNQRKAAYDEMTKLIEKARNNA 852
D A Y + + LA +Y LK+ R Y E + ++ A N
Sbjct: 785 DYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAE--RALKLAPNIP 837
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This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 5e-06
Identities = 20/34 (58%), Positives = 20/34 (58%)
Query: 27 VFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSS 60
F SG GGGG GGGGG GGGGGGSS
Sbjct: 162 GFGYGGSGNGGGGGGGYFGGGGGHYAGGGGGGSS 195
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This family of proteins is greatly expanded in Trichomonas vaginalis. The proteins are composed of several glycine rich motifs interspersed through the sequence. Although many proteins have been annotated by similarity in the family these annotations given the biased composition of the sequences these are unlikely to be functionally relevant. Length = 248 |
| >gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-05
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 30 INPSGPPAGGGGSAGGGGGGGGGGGGGGG 58
+ GGGG GGGGGG GGGG GG
Sbjct: 40 VQDDKYGGGGGGYGGGGGGGYGGGGYYGG 68
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This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Length = 91 |
| >gnl|CDD|220915 pfam10961, DUF2763, Protein of unknown function (DUF2763) | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-05
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 2 FVKMQQNFFTTMRSLKIIDGCKGTQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSS 60
F+ + FF TM S + + G GG GGG G GGGGG S
Sbjct: 31 FISL---FFRTMFSPDVTKRYRKNSSSGKRWDG--GRGGPGPPGGGRRMGRIGGGGGPS 84
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This eukaryotic family of proteins has no known function. Length = 91 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (107), Expect = 5e-05
Identities = 42/183 (22%), Positives = 70/183 (38%), Gaps = 5/183 (2%)
Query: 671 LANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYS-TSEHEKLVYEGWILYDTGHRE 729
L P + LLL L + A+ L A + + + LY+ G E
Sbjct: 88 LELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYE 147
Query: 730 EALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQAL 789
EAL E+++ + AL ++LLE+AL+ D +AL
Sbjct: 148 EALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD--DDAEAL 205
Query: 790 NNLGSVYVDCEKLDLAADCYMNALNIKHT--RAHQGLARVYHLKNQRKAAYDEMTKLIEK 847
NLG +Y+ K + A + Y AL + A LA + + + A + + K +E
Sbjct: 206 LNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265
Query: 848 ARN 850
+
Sbjct: 266 DPD 268
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Length = 291 |
| >gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 6e-05
Identities = 17/26 (65%), Positives = 17/26 (65%)
Query: 33 SGPPAGGGGSAGGGGGGGGGGGGGGG 58
G GGGG GGGG GGGGG GGG
Sbjct: 50 GGYGGGGGGGYGGGGYYGGGGGYGGG 75
|
This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Length = 91 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.2 bits (105), Expect = 9e-05
Identities = 49/260 (18%), Positives = 89/260 (34%), Gaps = 13/260 (5%)
Query: 671 LANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREE 730
L + L L LL ++ + L ++ L+ L G EE
Sbjct: 18 LLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEE 77
Query: 731 ALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALN 790
AL E+++ ++ L ++LLE+AL D +AL
Sbjct: 78 ALELLEKALELELLPNLA-EALLNLGLLLEALGKYEEALELLEKALALDPD-PDLAEALL 135
Query: 791 NLGSVYVDCEKLDLAADCYMNALNI-----KHTRAHQGLARVYHLKNQRKAAYDEMTKLI 845
LG + + A + Y AL + + A L + + + A + + K +
Sbjct: 136 ALG-ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194
Query: 846 EKARNNASAYEKRSEYC-----DRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE 900
+ ++ + + A A +LDP A +L++ + E
Sbjct: 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEE 254
Query: 901 AIAELSRAIAFKPDLQLLHL 920
A+ L +A+ PDL L L
Sbjct: 255 ALEALEKALELDPDLYNLGL 274
|
Length = 291 |
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 17/26 (65%), Positives = 17/26 (65%)
Query: 34 GPPAGGGGSAGGGGGGGGGGGGGGGS 59
G GGG G GGGGGG GGGGGG
Sbjct: 28 GGGRGGGRGRGRGGGGGGRGGGGGGG 53
|
Length = 293 |
| >gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 16/21 (76%), Positives = 16/21 (76%)
Query: 38 GGGGSAGGGGGGGGGGGGGGG 58
GGGG GGG GGGGG GGGG
Sbjct: 56 GGGGYGGGGYYGGGGGYGGGG 76
|
This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Length = 91 |
| >gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 16/25 (64%), Positives = 16/25 (64%)
Query: 38 GGGGSAGGGGGGGGGGGGGGGSSVG 62
GGGG GGGG GGGGG GG G
Sbjct: 54 GGGGGGYGGGGYYGGGGGYGGGGGG 78
|
This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Length = 91 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 787 QALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAYDEMTKL 844
+AL NLG++Y D A + Y AL + + A+ LA Y+ + + A ++ K
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 845 IEKARNNASAYEKRSEYCDR----DMAKSDLSMATQLDP 879
+E +NA AY + + A A +LDP
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 21/47 (44%), Positives = 24/47 (51%)
Query: 23 KGTQVFAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVGEKLLNHL 69
V ++ S GGGG GG GG GGGGGGGGG G + L
Sbjct: 64 ANGAVALLSASAISGGGGGGGGGFGGFGGGGGGGGGGGGGWRFWLRL 110
|
Length = 796 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 867 AKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAF-H 925
A A +LDP Y AA K EA+ + +A+ PD + +
Sbjct: 19 ALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAY 78
Query: 926 DSMGDHLHTQRDCEAALCLDPN 947
+G + E AL LDPN
Sbjct: 79 YKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 17/31 (54%), Positives = 17/31 (54%)
Query: 34 GPPAGGGGSAGGGGGGGGGGGGGGGSSVGEK 64
G G GG G G GGGGGG GGGG K
Sbjct: 26 GRGGGRGGGRGRGRGGGGGGRGGGGGGGPGK 56
|
Length = 293 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 3e-04
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 787 QALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVY-HLKNQRKAAYDEMTK 843
+AL NLG+ D A + Y AL + + A+ LA Y L + A +++ K
Sbjct: 4 EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63
Query: 844 LIE 846
+E
Sbjct: 64 ALE 66
|
Length = 69 |
| >gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 36 PAGGGGSAGGGGGGGGGGGGGGGSSVG 62
GGGG GGGGG GGGGGG S +
Sbjct: 172 GGGGGGYFGGGGGHYAGGGGGGSSYIS 198
|
This family of proteins is greatly expanded in Trichomonas vaginalis. The proteins are composed of several glycine rich motifs interspersed through the sequence. Although many proteins have been annotated by similarity in the family these annotations given the biased composition of the sequences these are unlikely to be functionally relevant. Length = 248 |
| >gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 15/21 (71%), Positives = 15/21 (71%)
Query: 38 GGGGSAGGGGGGGGGGGGGGG 58
GGG GGGG GGGGGG GG
Sbjct: 62 GGGYYGGGGGYGGGGGGYPGG 82
|
This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Length = 91 |
| >gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 34 GPPAGGGGSAGGGGGGGGGGGGG 56
G GGGG GGGGG GGGGGG
Sbjct: 64 GYYGGGGGYGGGGGGYPGGGGGG 86
|
This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Length = 91 |
| >gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 17/27 (62%), Positives = 17/27 (62%)
Query: 31 NPSGPPAGGGGSAGGGGGGGGGGGGGG 57
G GGGG GGGGGG GGGGGG
Sbjct: 60 YGGGGYYGGGGGYGGGGGGYPGGGGGG 86
|
This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Length = 91 |
| >gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 4e-04
Identities = 16/25 (64%), Positives = 16/25 (64%)
Query: 38 GGGGSAGGGGGGGGGGGGGGGSSVG 62
GGGG G GGGG GGGGG G G
Sbjct: 53 GGGGGGGYGGGGYYGGGGGYGGGGG 77
|
This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Length = 91 |
| >gnl|CDD|178680 PLN03134, PLN03134, glycine-rich RNA-binding protein 4; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 4e-04
Identities = 21/29 (72%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Query: 32 PSGPPA--GGGGSAGGGGGGGGGGGGGGG 58
PS P A GGGG +GGGGG GGGG GGGG
Sbjct: 115 PSAPRAYGGGGGYSGGGGGYGGGGDGGGG 143
|
Length = 144 |
| >gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 5e-04
Identities = 16/21 (76%), Positives = 16/21 (76%)
Query: 38 GGGGSAGGGGGGGGGGGGGGG 58
GGGG GGGGG GGGGGG G
Sbjct: 61 GGGGYYGGGGGYGGGGGGYPG 81
|
This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Length = 91 |
| >gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 19/30 (63%), Positives = 19/30 (63%)
Query: 33 SGPPAGGGGSAGGGGGGGGGGGGGGGSSVG 62
G GGGG GGGGGG GGGGGGGG
Sbjct: 123 GGGGGGGGGGFGGGGGGSGGGGGGGGGGGA 152
|
Length = 186 |
| >gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 37 AGGGGSAG----GGGGGGGGGGGGGGSSVGE 63
AGGGG +G G GG GGG GGGG+S G
Sbjct: 111 AGGGGGSGNYNGGSGGFGGGLVGGGGTSNGN 141
|
This family of proteins is greatly expanded in Trichomonas vaginalis. The proteins are composed of several glycine rich motifs interspersed through the sequence. Although many proteins have been annotated by similarity in the family these annotations given the biased composition of the sequences these are unlikely to be functionally relevant. Length = 248 |
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 16/35 (45%), Positives = 16/35 (45%)
Query: 28 FAINPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVG 62
G GGG GG G G GGGGGG G G
Sbjct: 17 GGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGG 51
|
Length = 293 |
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 31 NPSGPPAGGGGSAGGGGGGGGGGGGGGGSSVG 62
G GG G G GGG GGG G G G G
Sbjct: 13 GRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGG 44
|
Length = 293 |
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 16/35 (45%), Positives = 17/35 (48%)
Query: 38 GGGGSAGGGGGGGGGGGGGGGSSVGEKLLNHLQDH 72
GGG G G G GGGGGG GG G + H
Sbjct: 28 GGGRGGGRGRGRGGGGGGRGGGGGGGPGKVIVVPH 62
|
Length = 293 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 9e-04
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 885 YRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHL-RAAFHDSMGDHLH-TQRDCEAAL 942
+ L EAI +A+ PD + A + +G D E AL
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65
Query: 943 CLDP 946
LDP
Sbjct: 66 ELDP 69
|
Length = 69 |
| >gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.001
Identities = 16/25 (64%), Positives = 16/25 (64%)
Query: 38 GGGGSAGGGGGGGGGGGGGGGSSVG 62
GGGG GGGGGGG GGGG G
Sbjct: 46 GGGGGGYGGGGGGGYGGGGYYGGGG 70
|
This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Length = 91 |
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 16/31 (51%), Positives = 16/31 (51%)
Query: 31 NPSGPPAGGGGSAGGGGGGGGGGGGGGGSSV 61
G G G GGGG GGGGGGG G V
Sbjct: 29 GGRGGGRGRGRGGGGGGRGGGGGGGPGKVIV 59
|
Length = 293 |
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 16/31 (51%), Positives = 16/31 (51%)
Query: 34 GPPAGGGGSAGGGGGGGGGGGGGGGSSVGEK 64
G GG G G G GGGGGG GGG G
Sbjct: 25 GGRGGGRGGGRGRGRGGGGGGRGGGGGGGPG 55
|
Length = 293 |
| >gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 19/30 (63%), Positives = 19/30 (63%)
Query: 33 SGPPAGGGGSAGGGGGGGGGGGGGGGSSVG 62
G GGGG GGGGG GGGGGGGGG
Sbjct: 124 GGGGGGGGGFGGGGGGSGGGGGGGGGGGAP 153
|
Length = 186 |
| >gnl|CDD|164795 PHA00370, III, attachment protein | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 16/24 (66%), Positives = 17/24 (70%)
Query: 39 GGGSAGGGGGGGGGGGGGGGSSVG 62
GGG+ GGG GGG GG GGG S G
Sbjct: 101 GGGNTGGGSGGGDTGGSGGGGSDG 124
|
Length = 297 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 28/165 (16%), Positives = 62/165 (37%), Gaps = 7/165 (4%)
Query: 463 LGVVMLEREEYKDAQNWFKAA--VEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYT 520
G+ L + + AQ ++ A ++ +Y+ +G+A+ A L++ +++
Sbjct: 131 RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP 190
Query: 521 PV--GWMYQERSLYCSGK--EKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEI 576
+ + L G + A L P A +L+E + A
Sbjct: 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHA 250
Query: 577 NRIIG-FKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSYM 620
+ ++ SP L+A + ++Y+ A ++ L P Y+
Sbjct: 251 DALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYL 295
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.002
Identities = 15/25 (60%), Positives = 15/25 (60%)
Query: 34 GPPAGGGGSAGGGGGGGGGGGGGGG 58
G GG GGG GGGGGG GGG
Sbjct: 59 GYGGGGYYGGGGGYGGGGGGYPGGG 83
|
This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Length = 91 |
| >gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.002
Identities = 15/25 (60%), Positives = 15/25 (60%)
Query: 38 GGGGSAGGGGGGGGGGGGGGGSSVG 62
GGG GGGGG GGGGGG G
Sbjct: 60 YGGGGYYGGGGGYGGGGGGYPGGGG 84
|
This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Length = 91 |
| >gnl|CDD|164795 PHA00370, III, attachment protein | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 33 SGPPAGGGGSAGGGGGGGGGGGGGGGSSVG 62
+G GGG + GG GGG GG GGGGS G
Sbjct: 96 TGGDTGGGNTGGGSGGGDTGGSGGGGSDGG 125
|
Length = 297 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.002
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 14/139 (10%)
Query: 823 GLARVY--HLKNQRKAAYDEMTKLIEKA-------RNNASAYEKRSEY-C---DRDMAKS 869
G ++ +++ +Y+E + EKA A A R + C A +
Sbjct: 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALA 352
Query: 870 DLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKP-DLQLLHLRAAFHDSM 928
DLS + +LDP T Y RA++ ++ +A + +A+ D + + RA H
Sbjct: 353 DLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK 412
Query: 929 GDHLHTQRDCEAALCLDPN 947
G+ +D + ++ LDP+
Sbjct: 413 GEFAQAGKDYQKSIDLDPD 431
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 18/27 (66%), Positives = 19/27 (70%)
Query: 37 AGGGGSAGGGGGGGGGGGGGGGSSVGE 63
+GGGG G GG GGGGGGGGG GE
Sbjct: 114 SGGGGGGGDEGGYGGGGGGGGGGYGGE 140
|
Length = 182 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 537 EKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVS-PDCLELRAWI 595
E + DL+ + ELDP ++ Y RA + +E A + ++ + PD RA +
Sbjct: 349 EALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL 408
Query: 596 SIALEDYDGALRDVRALLTLDPSYMMFYGQL 626
++ A +D + + LDP ++ + QL
Sbjct: 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|204270 pfam09579, Spore_YtfJ, Sporulation protein YtfJ (Spore_YtfJ) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.003
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 37 AGGGGSAGGGGGGGGGGGGGGGSSV 61
AGGG G G GGGGG G S+
Sbjct: 20 AGGGEGKDKKGKTGFGGGGGAGVSI 44
|
Proteins in this family are encoded by bacterial genomes if, and only if, the species is capable of endospore formation. YtfJ was confirmed in spores of B. subtilis; it appears to be expressed in the forespore under control of SigF. Length = 81 |
| >gnl|CDD|197548 smart00157, PRP, Major prion protein | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 34 GPPAGGGGSAGGGGGG---GGGGGGGGGS 59
P GG G GGG G GGG G GGG+
Sbjct: 45 QPHGGGWGQPHGGGWGQPHGGGWGQGGGT 73
|
The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy. Length = 218 |
| >gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 17/26 (65%), Positives = 18/26 (69%)
Query: 37 AGGGGSAGGGGGGGGGGGGGGGSSVG 62
+ GGG GGGGG GGGGGG GG G
Sbjct: 121 SRGGGGGGGGGGFGGGGGGSGGGGGG 146
|
Length = 186 |
| >gnl|CDD|164795 PHA00370, III, attachment protein | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.004
Identities = 16/24 (66%), Positives = 16/24 (66%)
Query: 39 GGGSAGGGGGGGGGGGGGGGSSVG 62
GGGS GG GG GGGG GG S G
Sbjct: 106 GGGSGGGDTGGSGGGGSDGGGSEG 129
|
Length = 297 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 967 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.98 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.96 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.96 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.95 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 99.94 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 99.94 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.93 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 99.93 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.93 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.93 | |
| KOG4350 | 620 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.92 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.92 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.91 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.91 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.9 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.9 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.89 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.86 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.85 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.85 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.84 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.84 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.84 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.82 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.81 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.8 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.8 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.8 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.8 | |
| KOG2075 | 521 | consensus Topoisomerase TOP1-interacting protein B | 99.78 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.78 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.78 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.77 | |
| KOG4591 | 280 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.77 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.76 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.76 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.76 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.76 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.75 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.75 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.75 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.75 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.74 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.73 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.73 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.72 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.72 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.71 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.71 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.7 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.7 | |
| PF00651 | 111 | BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( | 99.7 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.69 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.69 | |
| KOG4682 | 488 | consensus Uncharacterized conserved protein, conta | 99.69 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.69 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.68 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.68 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.67 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.66 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.64 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.64 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.64 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.63 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.61 | |
| smart00225 | 90 | BTB Broad-Complex, Tramtrack and Bric a brac. Doma | 99.6 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.59 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.58 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.51 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.48 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.48 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.47 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.44 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.44 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.42 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.37 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.36 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.34 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.33 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.32 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.31 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.31 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.3 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.3 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.3 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.29 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.28 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.28 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.27 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.24 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.23 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.19 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.18 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.17 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.17 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.16 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.14 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.13 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.11 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.11 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.09 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.08 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.07 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.07 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.02 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.99 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.95 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.95 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.92 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.92 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.88 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.87 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.85 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.84 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.84 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.8 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.79 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.79 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.79 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.74 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.74 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.71 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.7 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.68 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.68 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.67 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.66 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.65 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.64 | |
| KOG0511 | 516 | consensus Ankyrin repeat protein [General function | 98.62 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.62 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.61 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.6 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.6 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.59 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.59 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.59 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.59 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.58 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 98.58 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.58 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.56 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.56 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.55 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.55 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.54 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.54 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.53 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.51 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.5 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.5 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.49 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.48 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.47 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.45 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.45 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.45 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.44 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.44 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.43 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.42 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.42 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.41 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.4 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.4 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.39 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.38 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.37 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.37 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.35 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.31 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.27 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.27 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.27 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.27 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.26 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.25 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.25 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.22 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.19 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.18 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.17 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.14 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.13 | |
| KOG2838 | 401 | consensus Uncharacterized conserved protein, conta | 98.11 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.11 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.09 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.07 | |
| KOG2716 | 230 | consensus Polymerase delta-interacting protein PDI | 98.03 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.01 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.96 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.94 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.93 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.91 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.91 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.89 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.89 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.85 | |
| KOG3473 | 112 | consensus RNA polymerase II transcription elongati | 97.82 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.76 | |
| PF02214 | 94 | BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi | 97.71 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.69 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.68 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.67 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.66 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.65 | |
| KOG1987 | 297 | consensus Speckle-type POZ protein SPOP and relate | 97.65 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.65 | |
| KOG2838 | 401 | consensus Uncharacterized conserved protein, conta | 97.6 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.58 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.56 | |
| COG4907 | 595 | Predicted membrane protein [Function unknown] | 97.52 | |
| PF07707 | 103 | BACK: BTB And C-terminal Kelch; InterPro: IPR01170 | 97.51 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.5 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.48 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.48 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.46 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.44 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.39 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.36 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.36 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.35 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.35 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.35 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.35 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.31 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.31 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.31 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.31 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.3 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.29 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.27 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.27 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.25 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.24 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.24 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 97.22 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.21 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.2 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.2 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.19 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.16 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.13 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.1 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.08 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.06 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.05 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.03 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 97.02 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.02 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.99 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.99 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.95 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.86 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.85 | |
| smart00875 | 101 | BACK BTB And C-terminal Kelch. The BACK domain is | 96.8 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.75 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.74 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.74 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.74 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.73 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.69 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.68 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.64 | |
| smart00512 | 104 | Skp1 Found in Skp1 protein family. Family of Skp1 | 96.52 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.3 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.28 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.27 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.22 | |
| PLN03138 | 796 | Protein TOC75; Provisional | 96.21 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.21 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.17 | |
| PF11822 | 317 | DUF3342: Domain of unknown function (DUF3342); Int | 96.05 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 96.0 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.0 | |
| KOG3915 | 641 | consensus Transcription regulator dachshund, conta | 95.95 | |
| KOG2714 | 465 | consensus SETA binding protein SB1 and related pro | 95.94 | |
| KOG1665 | 302 | consensus AFH1-interacting protein FIP2, contains | 95.92 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.8 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.78 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.67 | |
| PF03931 | 62 | Skp1_POZ: Skp1 family, tetramerisation domain; Int | 95.66 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.6 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.57 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.52 | |
| KOG1724 | 162 | consensus SCF ubiquitin ligase, Skp1 component [Po | 95.44 | |
| KOG0511 | 516 | consensus Ankyrin repeat protein [General function | 95.44 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 95.41 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.39 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.38 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.35 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.34 | |
| PF10961 | 91 | DUF2763: Protein of unknown function (DUF2763); In | 95.3 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.2 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 95.18 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 94.99 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 94.82 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.76 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 94.72 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 94.64 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 94.5 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 94.47 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.45 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.44 | |
| PLN03138 | 796 | Protein TOC75; Provisional | 94.4 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 94.35 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.28 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.24 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 94.19 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.15 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.05 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 94.04 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 93.98 | |
| COG5201 | 158 | SKP1 SCF ubiquitin ligase, SKP1 component [Posttra | 93.57 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.53 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 93.53 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 93.43 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 93.42 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 93.34 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 93.26 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.14 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 93.04 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 93.03 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 92.88 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 92.7 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 92.65 | |
| PF10961 | 91 | DUF2763: Protein of unknown function (DUF2763); In | 92.53 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 92.38 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.23 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 92.11 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 91.92 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 91.89 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.8 | |
| KOG2715 | 210 | consensus Uncharacterized conserved protein, conta | 91.72 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 91.28 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.24 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 91.09 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.53 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.5 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 90.37 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 90.34 | |
| COG4371 | 334 | Predicted membrane protein [Function unknown] | 90.17 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 90.13 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 90.1 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.09 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.08 | |
| KOG1778 | 319 | consensus CREB binding protein/P300 and related TA | 90.01 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.85 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 89.79 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 89.35 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 89.33 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.02 | |
| KOG2758 | 432 | consensus Translation initiation factor 3, subunit | 88.57 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.15 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 88.13 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 88.04 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 87.96 | |
| KOG3074 | 263 | consensus Transcriptional regulator of the PUR fam | 87.64 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 87.57 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.48 | |
| PF04094 | 828 | DUF390: Protein of unknown function (DUF390); Inte | 87.43 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 87.34 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 86.82 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.6 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 86.48 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 86.32 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 86.25 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 86.19 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 86.05 | |
| PF01466 | 78 | Skp1: Skp1 family, dimerisation domain; InterPro: | 85.86 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 85.71 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 85.2 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 84.43 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 84.33 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 83.95 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 82.07 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 81.92 | |
| KOG1456 | 494 | consensus Heterogeneous nuclear ribonucleoprotein | 81.83 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 81.81 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 81.73 | |
| KOG3840 | 438 | consensus Uncharaterized conserved protein, contai | 81.04 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.64 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 80.46 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 80.4 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 80.37 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 80.14 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-44 Score=381.51 Aligned_cols=429 Identities=17% Similarity=0.133 Sum_probs=391.2
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhCch--hHHHHHHHHHHhcCChHHHH-------HHHHHHHhccCcchhHHHH
Q 002100 458 LAFHQLGVVMLEREEYKDAQNWFKAAVEAGHI--YSLVGVARTKFKRGHKYSAY-------KLMNSLISDYTPVGWMYQE 528 (967)
Q Consensus 458 ~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~--~a~~~la~~~~~~g~~~~A~-------~~l~~~i~~~~~~g~~~~~ 528 (967)
.....|+.-.++-|+|++|++....+-..+|. .....+..+++...+.+... +.-.+..+.|.+.++++.+
T Consensus 49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 49 DDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 34667888899999999999999988888773 23334455555555554333 3333344467778888888
Q ss_pred HhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHH
Q 002100 529 RSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALR 607 (967)
Q Consensus 529 ~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~ 607 (967)
++++ +.|+..|+.++++.|+++++|.++|.++...|+.+.|...|..++.++| ...+...+|.+.-..|..++|..
T Consensus 129 rg~~---~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQL---QDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchH---HHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHH
Confidence 8866 9999999999999999999999999999999999999999999999999 78899999999999999999999
Q ss_pred HHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHH
Q 002100 608 DVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLL 687 (967)
Q Consensus 608 ~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~ 687 (967)
.|.++++..|....+| .+++-+....|+...| +..|++++.++|....+|+++|.+
T Consensus 206 cYlkAi~~qp~fAiaw------snLg~~f~~~Gei~~a------------------iq~y~eAvkldP~f~dAYiNLGnV 261 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAW------SNLGCVFNAQGEIWLA------------------IQHYEEAVKLDPNFLDAYINLGNV 261 (966)
T ss_pred HHHHHHhhCCceeeee------hhcchHHhhcchHHHH------------------HHHHHHhhcCCCcchHHHhhHHHH
Confidence 9999999999999888 6778888887877777 999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHH
Q 002100 688 LLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAY 767 (967)
Q Consensus 688 ~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~ 767 (967)
|...+.++.|+.+|.+|+...|+++.++.++|-+|+.+|..+-|+..|+++++++|+++
T Consensus 262 ~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~--------------------- 320 (966)
T KOG4626|consen 262 YKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP--------------------- 320 (966)
T ss_pred HHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCch---------------------
Confidence 99999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002100 768 VIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLI 845 (967)
Q Consensus 768 a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al 845 (967)
.+|+|+|.++.+.|+..+|+++|++|+. +++.+++.+||.+|..+|.+++|...|.+++
T Consensus 321 -------------------~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al 381 (966)
T KOG4626|consen 321 -------------------DAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL 381 (966)
T ss_pred -------------------HHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 8999999999999999999999999999 6677899999999999999999999999999
Q ss_pred HHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHH
Q 002100 846 EKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHL 920 (967)
Q Consensus 846 ~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~ 920 (967)
+..|..+.+..+++. .|++++|+.+|++|++++|..++++.++|.+|..+|+...|+..|.+||.++|.. +++.+
T Consensus 382 ~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsN 461 (966)
T KOG4626|consen 382 EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSN 461 (966)
T ss_pred hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhh
Confidence 999999999999984 2999999999999999999999999999999999999999999999999999994 69999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCchhHHH
Q 002100 921 RAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLE 953 (967)
Q Consensus 921 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~ 953 (967)
+|.+|...|+..+|+..|+.||.+.|+.+++..
T Consensus 462 Lasi~kDsGni~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 462 LASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred HHHHhhccCCcHHHHHHHHHHHccCCCCchhhh
Confidence 999999999999999999999999999888643
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=362.18 Aligned_cols=391 Identities=19% Similarity=0.186 Sum_probs=293.8
Q ss_pred HhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc--hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHH
Q 002100 449 SATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH--IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMY 526 (967)
Q Consensus 449 ~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~ 526 (967)
..+..++-+.+|-++|.++.++|++++|+..|+.++++.| ..++.++|.++..+|+.
T Consensus 108 a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~--------------------- 166 (966)
T KOG4626|consen 108 AIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDL--------------------- 166 (966)
T ss_pred hhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCC---------------------
Confidence 4456788899999999999999999999999999999988 55666766666555544
Q ss_pred HHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHH
Q 002100 527 QERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGA 605 (967)
Q Consensus 527 ~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A 605 (967)
+.|...|.+|++++|++.-+...+|.++-.+|+..+|...|.+|+...| ..-+|..+|.++..+|+.-.|
T Consensus 167 ---------~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~a 237 (966)
T KOG4626|consen 167 ---------ELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLA 237 (966)
T ss_pred ---------cccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHH
Confidence 6667777777777777777777777777777777777777777777777 566777777777777777777
Q ss_pred HHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHH
Q 002100 606 LRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQS 685 (967)
Q Consensus 606 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g 685 (967)
+..|+++++++|+..++| +++|.+|.....|+.| +..|.+++.+.|....++-++|
T Consensus 238 iq~y~eAvkldP~f~dAY------iNLGnV~ke~~~~d~A------------------vs~Y~rAl~lrpn~A~a~gNla 293 (966)
T KOG4626|consen 238 IQHYEEAVKLDPNFLDAY------INLGNVYKEARIFDRA------------------VSCYLRALNLRPNHAVAHGNLA 293 (966)
T ss_pred HHHHHHhhcCCCcchHHH------hhHHHHHHHHhcchHH------------------HHHHHHHHhcCCcchhhccceE
Confidence 777777777777777777 6667777777777777 7777777777777777777777
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCch
Q 002100 686 LLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESS 765 (967)
Q Consensus 686 ~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~ 765 (967)
-+|..+|..+-|+.+|+++++..|+.++++.++|.++.+.|+..+|+.+|.+++.+.|+++
T Consensus 294 ~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha------------------- 354 (966)
T KOG4626|consen 294 CIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA------------------- 354 (966)
T ss_pred EEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH-------------------
Confidence 7777777777777777777777777777777777777777777777777777777777655
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH--HHHHHHHHHHHHhCCHHHHHHHHHH
Q 002100 766 AYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT--RAHQGLARVYHLKNQRKAAYDEMTK 843 (967)
Q Consensus 766 ~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--~a~~~la~~~~~~g~~~~A~~~~~~ 843 (967)
++.+|||.+|.++|++++|...|.++++..+. .++.+||.+|.++|++++|+..|+.
T Consensus 355 ---------------------dam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 355 ---------------------DAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred ---------------------HHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 67777777777777777777777777774443 3677777777777777777777777
Q ss_pred HHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHH
Q 002100 844 LIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLL 918 (967)
Q Consensus 844 al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~ 918 (967)
+|.+.|+.+++|.++|. .|+.+.|+.+|.+|+..+|..++++.++|.+|...|+..+||..|+.+++++|+ ++++
T Consensus 414 alrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 414 ALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY 493 (966)
T ss_pred HHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence 77777777777777773 277777777777777888888888888888888888888888888888888888 5677
Q ss_pred HHHHHHHHHcCChHH
Q 002100 919 HLRAAFHDSMGDHLH 933 (967)
Q Consensus 919 ~~~a~~~~~~g~~~~ 933 (967)
-+++.++.-..+|.+
T Consensus 494 cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 494 CNLLHCLQIVCDWTD 508 (966)
T ss_pred hHHHHHHHHHhcccc
Confidence 777777665555444
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=357.94 Aligned_cols=493 Identities=13% Similarity=0.107 Sum_probs=355.2
Q ss_pred hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc--hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcch-------h
Q 002100 454 WQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH--IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVG-------W 524 (967)
Q Consensus 454 ~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g-------~ 524 (967)
+.....+..+|.++...|++++|+..|+++++.+| ...+..++.++...|++.+|+..+.+++...+... .
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 439 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLIL 439 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHH
Confidence 33344455555555555555555555555555543 23334445555555555555555555554333221 1
Q ss_pred HHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHH
Q 002100 525 MYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYD 603 (967)
Q Consensus 525 ~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~ 603 (967)
.+...+ +.++|+..+++.+...|+++..+..+|.++...|++++|+..|+++++.+| +..++..+|.++...|+++
T Consensus 440 ~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 440 SYLRSG---QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHhcC---CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHH
Confidence 122222 225555555555555555555555555555555555555555555555555 4445555555555555555
Q ss_pred HHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhh----------------hccccccchHHHH
Q 002100 604 GALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDR----------------WSSVDDIGSLAVV 667 (967)
Q Consensus 604 ~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~----------------~~~~d~~~al~~~ 667 (967)
+|+..|++++..+|++..++ ..++.++...+++++|..|.+-... ....+...++..+
T Consensus 517 ~A~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 517 DAIQRFEKVLTIDPKNLRAI------LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred HHHHHHHHHHHhCcCcHHHH------HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 55555555555555544444 3334444444444444322211000 0011223348899
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHH
Q 002100 668 HHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEA 747 (967)
Q Consensus 668 ~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 747 (967)
+++++..|.++..+..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|+++++.+|++..
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 670 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE 670 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997653
Q ss_pred HHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH-HHHHHHHH
Q 002100 748 FFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT-RAHQGLAR 826 (967)
Q Consensus 748 ~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~-~a~~~la~ 826 (967)
.+ ..++......+..+.+..+++.+.+.. +.....+..+|.++...|++++|+..|++++...+. ..+..++.
T Consensus 671 ~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 744 (899)
T TIGR02917 671 AQ---IGLAQLLLAAKRTESAKKIAKSLQKQH---PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHR 744 (899)
T ss_pred HH---HHHHHHHHHcCCHHHHHHHHHHHHhhC---cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHH
Confidence 32 233444445567888888888877654 344578889999999999999999999999985544 47888999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHH
Q 002100 827 VYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAI 902 (967)
Q Consensus 827 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi 902 (967)
++...|++++|++.++++++..|++..++..++. .|++++|+..|+++++.+|+++.++.++|.++...|+ .+|+
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~ 823 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRAL 823 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHH
Confidence 9999999999999999999999999999999984 3999999999999999999999999999999999999 8899
Q ss_pred HHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 903 AELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 903 ~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
..++++++..|+. ..+..+|.++..+|++++|+..|+++++.+|+++++...+..+.-..
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 824 EYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Confidence 9999999999984 58889999999999999999999999999999999987777665543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=352.99 Aligned_cols=494 Identities=17% Similarity=0.146 Sum_probs=355.0
Q ss_pred hchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc--hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHH
Q 002100 452 ESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH--IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQER 529 (967)
Q Consensus 452 ~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~ 529 (967)
..+..+..+..+|.+++..|++++|+..|+++++.+| ..+...++.++...|++.+|...+++++...+.....+..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 199 (899)
T TIGR02917 120 DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK 199 (899)
T ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 4566677888899999999999999999999988866 55677888888899999999999998888666544333333
Q ss_pred hh----cCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHH
Q 002100 530 SL----YCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDG 604 (967)
Q Consensus 530 ~~----y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~ 604 (967)
+. -++.++|+..|+++++.+|.+..++..++.++...|++++|...++++++..| ++..++.+|.++...|++++
T Consensus 200 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (899)
T TIGR02917 200 GDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYED 279 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHH
Confidence 21 12558999999999999999999999999999999999999999999988888 77888888888889999999
Q ss_pred HHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhh----------------hccccccchHHHHH
Q 002100 605 ALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDR----------------WSSVDDIGSLAVVH 668 (967)
Q Consensus 605 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~----------------~~~~d~~~al~~~~ 668 (967)
|+..|+++++.+|++..++ ...+.++...+++++|..+.+.... ....+...++..+.
T Consensus 280 A~~~~~~~l~~~~~~~~~~------~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 353 (899)
T TIGR02917 280 ARETLQDALKSAPEYLPAL------LLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLS 353 (899)
T ss_pred HHHHHHHHHHhCCCchhHH------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999888877666 5667778888888877432221100 01122244677788
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHH
Q 002100 669 HMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAF 748 (967)
Q Consensus 669 ~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 748 (967)
++++.+|.++..+..+|.++...|++++|+..|+++++.+|++...+..+|.++...|++++|+..+++++..+|+....
T Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 433 (899)
T TIGR02917 354 PALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888754421
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHH
Q 002100 749 FLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLAR 826 (967)
Q Consensus 749 ~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~ 826 (967)
...++......+..+.++..++...+..+ .....+..+|.++...|++++|+.+|+++++.+ ...++..+|.
T Consensus 434 ---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 507 (899)
T TIGR02917 434 ---DLLLILSYLRSGQFDKALAAAKKLEKKQP---DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR 507 (899)
T ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 12233333445566777777777665433 334677778888888888888888888887743 3447777777
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHH
Q 002100 827 VYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAI 902 (967)
Q Consensus 827 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi 902 (967)
++...|++++|++.|+++++..|++..++..++.. +++++|+..++++++.+|.+...+..++.++...|++++|+
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHH
Confidence 77777777777777777777777777666665532 56666666666666666655555555555555555555555
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 002100 903 AELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDK 957 (967)
Q Consensus 903 ~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r 957 (967)
..++++++..|. ...+..+|.++...|++++|+..|+++++.+|+++.++..+..
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 643 (899)
T TIGR02917 588 AILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643 (899)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 555555555554 2355555555555555555555555555555555544443333
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=353.10 Aligned_cols=412 Identities=13% Similarity=0.057 Sum_probs=313.7
Q ss_pred hcchHHHHHHHHHHhccCcccccchHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhH--
Q 002100 414 VGHASFVLYYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYS-- 491 (967)
Q Consensus 414 ~~~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a-- 491 (967)
+.+...++....-|... .+.+.+.+.++++....++ +..++..++.+++..|++++|.+.++++++++|...
T Consensus 25 ~~~~~~Ll~q~~~~~~~---~~~d~a~~~l~kl~~~~p~---~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~ 98 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEAT---HREDLVRQSLYRLELIDPN---NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAY 98 (1157)
T ss_pred CCHHHHHHHHHHHHHhh---CChHHHHHHHHHHHccCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHH
Confidence 33445677777777764 3667777778777666554 456778899999999999999999999999977332
Q ss_pred ----------------HHHHHHHHHhcCChHHHHHHHHHHHhccCcchh---HHHHH-h-hcCChHHHHHHHHHhHhhCC
Q 002100 492 ----------------LVGVARTKFKRGHKYSAYKLMNSLISDYTPVGW---MYQER-S-LYCSGKEKMMDLNTATELDP 550 (967)
Q Consensus 492 ----------------~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~---~~~~~-~-~y~~~~~A~~~~~~al~l~P 550 (967)
...+|+++...|++++|+..|++++...++... .|... . .-++.++|+..|+++++.+|
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P 178 (1157)
T PRK11447 99 RSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP 178 (1157)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC
Confidence 245677889999999999999999997665542 12221 1 11356999999999999999
Q ss_pred CCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C----------------------------------hh---H----
Q 002100 551 TLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S----------------------------------PD---C---- 588 (967)
Q Consensus 551 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~----------------------------------~~---~---- 588 (967)
+++.++..+|.++...|++++|++.+++++...+ . .. +
T Consensus 179 ~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L 258 (1157)
T PRK11447 179 GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQL 258 (1157)
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHH
Confidence 9999999999999999999999999998865432 0 00 0
Q ss_pred -------------HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhh
Q 002100 589 -------------LELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRW 655 (967)
Q Consensus 589 -------------~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~ 655 (967)
...+|.++...|++++|+..|+++++.+|++..++ ..++.++...+++++|
T Consensus 259 ~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~------~~Lg~~~~~~g~~~eA---------- 322 (1157)
T PRK11447 259 AEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEAL------GALGQAYSQQGDRARA---------- 322 (1157)
T ss_pred HHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHcCCHHHH----------
Confidence 01347788899999999999999999999999988 7889999999999999
Q ss_pred ccccccchHHHHHHHHhcCCCChH--------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 002100 656 SSVDDIGSLAVVHHMLANDPGKSL--------------LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWI 721 (967)
Q Consensus 656 ~~~d~~~al~~~~~~l~~~p~~~~--------------~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~ 721 (967)
+..|+++++.+|++.. ....+|..+...|++++|+..|+++++.+|++..++..+|.+
T Consensus 323 --------~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~ 394 (1157)
T PRK11447 323 --------VAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDV 394 (1157)
T ss_pred --------HHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8999999999997653 223558889999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCC------CchHHHHHHhHHH
Q 002100 722 LYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDG------LRKGQALNNLGSV 795 (967)
Q Consensus 722 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~------~~~~~a~~~lg~~ 795 (967)
+...|++++|++.|+++++++|++.........+.. ....++++..++.+....... ......+..+|.+
T Consensus 395 ~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~----~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~ 470 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR----QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEA 470 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999999999987643321111111 123455555554332211000 0112345667778
Q ss_pred HHhcccHHHHHHHHHHHhccCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH
Q 002100 796 YVDCEKLDLAADCYMNALNIKH--TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS 859 (967)
Q Consensus 796 ~~~~g~~~~A~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 859 (967)
+...|++++|+..|+++++.+| ..+++.+|.+|..+|++++|+..|+++++..|+++.+++.++
T Consensus 471 ~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~a 536 (1157)
T PRK11447 471 LENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYG 536 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 8888888888888888877444 347777888888888888888888888887777766554443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=345.82 Aligned_cols=469 Identities=13% Similarity=0.031 Sum_probs=335.0
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchh---HHHHHHHHHHhcCChH------------
Q 002100 442 LLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIY---SLVGVARTKFKRGHKY------------ 506 (967)
Q Consensus 442 ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~---a~~~la~~~~~~g~~~------------ 506 (967)
.++.+.+.....|....+++.+|.+++..|++++|+..|+++++..+.. +...+..+ ...+...
T Consensus 166 A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l-~~~~~~~~~~~~l~~~l~~ 244 (1157)
T PRK11447 166 AINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQI-KDMPVSDASVAALQKYLQV 244 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHH-hccCCChhhHHHHHHHHHH
Confidence 3444444555566677788888999988999999999998887653211 00010000 0001111
Q ss_pred --------HHHHHHHHHHhcc--C-----cchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHH
Q 002100 507 --------SAYKLMNSLISDY--T-----PVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAA 571 (967)
Q Consensus 507 --------~A~~~l~~~i~~~--~-----~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~ 571 (967)
.|...+.+..... + ..|.++...+++ ++|+..|+++++.+|+++.++..+|.++..+|++++
T Consensus 245 ~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~---~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~e 321 (1157)
T PRK11447 245 FSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQG---GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRAR 321 (1157)
T ss_pred CCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 1222222211100 0 113333333433 777777777777777777777777777777777777
Q ss_pred HHHHHHHHhccCC-Chh--------------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhH
Q 002100 572 AITEINRIIGFKV-SPD--------------CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQ 636 (967)
Q Consensus 572 A~~~~~~al~~~p-~~~--------------~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~ 636 (967)
|+..|+++++.+| +.. ....+|.++...|++++|+..|+++++++|++..++ ..++.++
T Consensus 322 A~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~------~~Lg~~~ 395 (1157)
T PRK11447 322 AVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAV------LGLGDVA 395 (1157)
T ss_pred HHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHH
Confidence 7777777777766 221 112346666677777777777777777777766666 5566777
Q ss_pred HHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH-----------------------------------
Q 002100 637 PLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR----------------------------------- 681 (967)
Q Consensus 637 ~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~----------------------------------- 681 (967)
...+++++| +..|+++++.+|.+..++
T Consensus 396 ~~~g~~~eA------------------~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~ 457 (1157)
T PRK11447 396 MARKDYAAA------------------ERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIER 457 (1157)
T ss_pred HHCCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 777777776 455555555555544333
Q ss_pred -------HHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 682 -------FRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 682 -------~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|++.... +.
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~---~a 534 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQV---YA 534 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH---HH
Confidence 34556667789999999999999999999999999999999999999999999999999999766322 12
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCC-------chHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHH
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGL-------RKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARV 827 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~ 827 (967)
++......++.+.++..++.+........ ........++..+...|++++|+.+++ ..+.+...+..+|.+
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~--~~p~~~~~~~~La~~ 612 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR--QQPPSTRIDLTLADW 612 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH--hCCCCchHHHHHHHH
Confidence 22222234556667776665432211100 011234567889999999999999998 356666789999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHH
Q 002100 828 YHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIA 903 (967)
Q Consensus 828 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~ 903 (967)
+..+|++++|++.|+++++.+|++..++..++.. +++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999999999999843 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCh-------HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 904 ELSRAIAFKPDL-------QLLHLRAAFHDSMGDHLHTQRDCEAALC 943 (967)
Q Consensus 904 ~~~kal~~~p~~-------~~~~~~a~~~~~~g~~~~A~~~~~~al~ 943 (967)
.|+++++..|+. .++..+|.++...|++++|+..|++|+.
T Consensus 693 ~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 693 TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999987652 2555679999999999999999999985
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=322.48 Aligned_cols=418 Identities=12% Similarity=0.051 Sum_probs=327.1
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCCh
Q 002100 456 KQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSG 535 (967)
Q Consensus 456 ~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~ 535 (967)
.+..+..+|..++..|+|++|+..|++++++.|.. ... .+.+.+|..+++|
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~-~~~-------------------------~n~a~~~~~l~~~--- 176 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-VYY-------------------------SNRAACHNALGDW--- 176 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch-HHH-------------------------HHHHHHHHHhCCH---
Confidence 35568899999999999999999999999998742 111 1235566667766
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
++|+..++++++++|++..+++.+|.+|..+|++++|+..|..+...++ +.........-.. ...+...+..+++
T Consensus 177 ~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~a~~~~~~~l~ 252 (615)
T TIGR00990 177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL----KKFAESKAKEILE 252 (615)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998887776 3322111111111 1344555666666
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhh--------------chhhHhhHHHHHhhh----ccccccchHHHHHHHHhc---
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQ--------------QWSQADCWMQLYDRW----SSVDDIGSLAVVHHMLAN--- 673 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~A~~~~~l~~~~----~~~d~~~al~~~~~~l~~--- 673 (967)
..|.+...+.. ++..+.... +......+..++... .......|+..|+++++.
T Consensus 253 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~ 326 (615)
T TIGR00990 253 TKPENLPSVTF------VGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL 326 (615)
T ss_pred cCCCCCCCHHH------HHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Confidence 66665433311 111110000 000000011111100 001112348889999876
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Q 002100 674 DPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY 753 (967)
Q Consensus 674 ~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 753 (967)
.|....++..+|.++..+|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++.
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~------- 399 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP------- 399 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------
Confidence 4777888999999999999999999999999999999999999999999999999999999999999998666
Q ss_pred HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--HHHHHHHHHHHHHh
Q 002100 754 ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH--TRAHQGLARVYHLK 831 (967)
Q Consensus 754 ~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~a~~~la~~~~~~ 831 (967)
.+++.+|.++...|++++|+.+|+++++.+| ..++..+|.++..+
T Consensus 400 ---------------------------------~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 400 ---------------------------------DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred ---------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC
Confidence 7899999999999999999999999999655 45899999999999
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchH------HHHHHHHHH-hCCCHHH
Q 002100 832 NQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYP------YRYRAAVLM-DDHKEAE 900 (967)
Q Consensus 832 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~------~~~la~~~~-~~g~~~e 900 (967)
|++++|+..|+++++..|+++.++..+|.. |++++|+..|+++++++|..... +...+.++. ..|++++
T Consensus 447 g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 447 GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999999999999999853 99999999999999999975433 233344444 4699999
Q ss_pred HHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHH
Q 002100 901 AIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTL 952 (967)
Q Consensus 901 Ai~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l 952 (967)
|+..++++++++|+.. ++..+|.++..+|++++|+..|++++++.+...+..
T Consensus 527 A~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~ 579 (615)
T TIGR00990 527 AENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV 579 (615)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999964 788899999999999999999999999999766643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-28 Score=280.18 Aligned_cols=503 Identities=14% Similarity=0.056 Sum_probs=403.7
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc---hhHHHHHHHHHHhcCChHHHHHHHHHH
Q 002100 439 TVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH---IYSLVGVARTKFKRGHKYSAYKLMNSL 515 (967)
Q Consensus 439 ~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~---~~a~~~la~~~~~~g~~~~A~~~l~~~ 515 (967)
...+..+..-.....|.+.++++..+++.+..|+|..|+.+|++++.++| ....++.+.+..+.|+.+.|...+.++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 34445555556677888999999999999999999999999999999977 566778888999999999999999998
Q ss_pred HhccCcchhHHHHHhhc----C---ChHHHHHHHHHhHhhCCCCch----------------------------------
Q 002100 516 ISDYTPVGWMYQERSLY----C---SGKEKMMDLNTATELDPTLSY---------------------------------- 554 (967)
Q Consensus 516 i~~~~~~g~~~~~~~~y----~---~~~~A~~~~~~al~l~P~~~~---------------------------------- 554 (967)
++.-|....++..++.+ . ....++..+.++...+|.++.
T Consensus 226 lqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~ 305 (1018)
T KOG2002|consen 226 LQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI 305 (1018)
T ss_pred HhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH
Confidence 88666443333333211 0 336666777777766665543
Q ss_pred ---hHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C-hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhh
Q 002100 555 ---PYKYRAILLVEENKLAAAITEINRIIGFKV-S-PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGD 629 (967)
Q Consensus 555 ---~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 629 (967)
.+|.+|.+|..+|+|++|..+|.++++.+| + .-.++.+|++|+..|+++.|+.+|+++++..|++....
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm------ 379 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM------ 379 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH------
Confidence 356778888888888888888888888888 4 66888888889889999999999999999999888877
Q ss_pred hhHhhhHHHhh----ch---------------hhHhhHHHHHhhhccccccchHHHHHHHHhc-----CCCChHHHHHHH
Q 002100 630 NLVETLQPLVQ----QW---------------SQADCWMQLYDRWSSVDDIGSLAVVHHMLAN-----DPGKSLLRFRQS 685 (967)
Q Consensus 630 ~~~~~l~~~~~----~~---------------~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~-----~p~~~~~~~~~g 685 (967)
..+|.+|...+ .- ...+.|+.+.+.|...|.-.++..|..++.. .+--+....++|
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVA 459 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence 66677776653 11 1234677777777777777778888887732 244467888999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhc-----CCch-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHh
Q 002100 686 LLLLRLNSQKAAMRSLRLARNY-----STSE-----HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYAL 755 (967)
Q Consensus 686 ~~~~~~g~~~~A~~~l~~al~~-----~p~~-----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~l 755 (967)
.+++..|+++.|...|..|+.. +++. ....+++|.++...++++.|.+.|...+...|.+...++....+
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~m 539 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCM 539 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHH
Confidence 9999999999999999999876 2222 23478999999999999999999999999999877555444333
Q ss_pred hhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc----cCcHHHHHHHHHHHHH-
Q 002100 756 ADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN----IKHTRAHQGLARVYHL- 830 (967)
Q Consensus 756 a~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----~~~~~a~~~la~~~~~- 830 (967)
+ .+......+...+..++...+.+| .++..+|..|+...++..|.+-|+..++ ...+++...||.++++
T Consensus 540 a---~~k~~~~ea~~~lk~~l~~d~~np---~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 540 A---RDKNNLYEASLLLKDALNIDSSNP---NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred H---HhccCcHHHHHHHHHHHhcccCCc---HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 3 234556778888888888777766 7888999999999999999998887776 3345688889998764
Q ss_pred -----------hCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhC
Q 002100 831 -----------KNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDD 895 (967)
Q Consensus 831 -----------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~ 895 (967)
++.+++|+..|.+++..+|.|.++-+..|. -+++.+|+..|.++.+--.++..+|.++|.+|+.+
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHH
Confidence 456889999999999999999998888874 29999999999999988778999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHH
Q 002100 896 HKEAEAIAELSRAIAFKP---DLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLE 953 (967)
Q Consensus 896 g~~~eAi~~~~kal~~~p---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~ 953 (967)
|+|..|++.|+.+++..- +.+++..+|.++...|++.+|...+.+|+.+.|.++.+.=
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~F 754 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKF 754 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHh
Confidence 999999999999997543 3679999999999999999999999999999999987643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.2e-29 Score=299.00 Aligned_cols=415 Identities=15% Similarity=0.050 Sum_probs=334.7
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc--hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcch-h--HHHHHhh
Q 002100 457 QLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH--IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVG-W--MYQERSL 531 (967)
Q Consensus 457 a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g-~--~~~~~~~ 531 (967)
...+.++|.+|+..|+|++|+..|+++++++| ..++..++.++...|++++|+..+..+........ . ....+..
T Consensus 160 ~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (615)
T TIGR00990 160 PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL 239 (615)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34688999999999999999999999999987 45778889999999999999999977655322111 1 1111111
Q ss_pred cCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHH---HhcCHHHHHH
Q 002100 532 YCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISI---ALEDYDGALR 607 (967)
Q Consensus 532 y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~---~~g~~~~A~~ 607 (967)
. ..+...+..+++..|.+...+..++..+ ...+...+...+....+.++ ....+..++..+. ..++|++|+.
T Consensus 240 ~---~~a~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~ 315 (615)
T TIGR00990 240 K---KFAESKAKEILETKPENLPSVTFVGNYL-QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315 (615)
T ss_pred H---HHHHHHHHHHHhcCCCCCCCHHHHHHHH-HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence 1 4566777888888999888888787755 33334444555666666666 4555566555443 3478999999
Q ss_pred HHHHHHHhC---CCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHH
Q 002100 608 DVRALLTLD---PSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQ 684 (967)
Q Consensus 608 ~~~~al~l~---p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~ 684 (967)
.|+++++.+ |+...++ ..++.++...+++++| +..++++++.+|.....+..+
T Consensus 316 ~~~~al~~~~~~~~~a~a~------~~lg~~~~~~g~~~eA------------------~~~~~kal~l~P~~~~~~~~l 371 (615)
T TIGR00990 316 AFEKALDLGKLGEKEAIAL------NLRGTFKCLKGKHLEA------------------LADLSKSIELDPRVTQSYIKR 371 (615)
T ss_pred HHHHHHhcCCCChhhHHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHcCCCcHHHHHHH
Confidence 999999874 6666666 7789999999999999 999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCc
Q 002100 685 SLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPES 764 (967)
Q Consensus 685 g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~ 764 (967)
|.++...|++++|+..|+++++.+|+++.+++.+|.+++..|++++|+..|+++++++|++.
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~------------------ 433 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI------------------ 433 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH------------------
Confidence 99999999999999999999999999999999999999999999999999999999999766
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002100 765 SAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAYDEMT 842 (967)
Q Consensus 765 ~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~ 842 (967)
.++.++|.++..+|++++|+..|+++++. +...++..+|.++..+|++++|++.|+
T Consensus 434 ----------------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 434 ----------------------FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491 (615)
T ss_pred ----------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 68889999999999999999999999984 445689999999999999999999999
Q ss_pred HHHHHccCCHHHHH------HHH-----ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 002100 843 KLIEKARNNASAYE------KRS-----EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAF 911 (967)
Q Consensus 843 ~al~~~p~~~~~~~------~~~-----~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~ 911 (967)
++++..|++...+. ..+ ..+++++|+..++++++++|++..++..+|.++...|++++|+..|++++++
T Consensus 492 ~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 492 TAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999987433222 111 1289999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 002100 912 KPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDP 946 (967)
Q Consensus 912 ~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P 946 (967)
.+...-.. ....+.+|.+...++.+..|
T Consensus 572 ~~~~~e~~-------~a~~~~~a~~~~~~~~~~~~ 599 (615)
T TIGR00990 572 ARTEGELV-------QAISYAEATRTQIQVQEDYP 599 (615)
T ss_pred hccHHHHH-------HHHHHHHHHHHHHHHHHHhH
Confidence 87743211 11234455555555555544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-27 Score=289.67 Aligned_cols=496 Identities=13% Similarity=-0.020 Sum_probs=340.5
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcc
Q 002100 443 LERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPV 522 (967)
Q Consensus 443 l~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~ 522 (967)
+..+.++...+|....+++.++..|+..|++++|+.+++++++.+|......+..... +++.+|...+++++...|..
T Consensus 64 ~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i--~~~~kA~~~ye~l~~~~P~n 141 (987)
T PRK09782 64 IREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI--PVEVKSVTTVEELLAQQKAC 141 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh--ccChhHHHHHHHHHHhCCCC
Confidence 3333334444455566677777777777777777777777777777554444332222 66777777777777777765
Q ss_pred hhHHHHHhh---------cCChHHHHHHHHHhHhhCCC--CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHH
Q 002100 523 GWMYQERSL---------YCSGKEKMMDLNTATELDPT--LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLE 590 (967)
Q Consensus 523 g~~~~~~~~---------y~~~~~A~~~~~~al~l~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 590 (967)
..++..+.. |.+.++|.+.++ .-.+.|+ .....+.++.+|..+++|++|++.+.++++..| +...+.
T Consensus 142 ~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~ 220 (987)
T PRK09782 142 DAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERR 220 (987)
T ss_pred hhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 555544332 334456665555 2222232 223455557777777777777777777777777 666777
Q ss_pred HHHHHHHH-hcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHh----------------
Q 002100 591 LRAWISIA-LEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYD---------------- 653 (967)
Q Consensus 591 ~la~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~---------------- 653 (967)
.++.+|.. +++ ++|+..++..++ +++... ..++..+...++.++|..+++-+.
T Consensus 221 ~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~------~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l 290 (987)
T PRK09782 221 QWFDVLLAGQLD-DRLLALQSQGIF---TDPQSR------ITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL 290 (987)
T ss_pred HHHHHHHHhhCH-HHHHHHhchhcc---cCHHHH------HHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH
Confidence 77777776 355 666666554333 222222 233444555555555543322100
Q ss_pred -hhcc------------------------------------------------------------ccccchHHHHHHHHh
Q 002100 654 -RWSS------------------------------------------------------------VDDIGSLAVVHHMLA 672 (967)
Q Consensus 654 -~~~~------------------------------------------------------------~d~~~al~~~~~~l~ 672 (967)
+.+. ....++......+..
T Consensus 291 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~ 370 (987)
T PRK09782 291 SKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQ 370 (987)
T ss_pred HhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHh
Confidence 0000 000011122222333
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh----------------------------------------------
Q 002100 673 NDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARN---------------------------------------------- 706 (967)
Q Consensus 673 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~---------------------------------------------- 706 (967)
..|.+.......+....+.|++++|...|+.+..
T Consensus 371 ~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 450 (987)
T PRK09782 371 QEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQW 450 (987)
T ss_pred cCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHH
Confidence 3355555555555555556666665555544432
Q ss_pred -------------------cCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCch
Q 002100 707 -------------------YSTS--EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESS 765 (967)
Q Consensus 707 -------------------~~p~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~ 765 (967)
..|. ++.+++.+|.++.. ++.++|+..+.+++...|+.......++. ....++.
T Consensus 451 ~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~a----l~~~Gr~ 525 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQ----AYQVEDY 525 (987)
T ss_pred HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHH----HHHCCCH
Confidence 3344 66778888888887 88889999999999999976532222222 2345677
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhCCHHHHHHHHHH
Q 002100 766 AYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKNQRKAAYDEMTK 843 (967)
Q Consensus 766 ~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~~~~~~ 843 (967)
+.++..++++...+.. ...+..+|.++...|++++|+.+|+++++.++.. .+..++.....+|++++|+..|++
T Consensus 526 eeAi~~~rka~~~~p~----~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 526 ATALAAWQKISLHDMS----NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred HHHHHHHHHHhccCCC----cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 8888888887654333 2457888999999999999999999999965443 555566666677999999999999
Q ss_pred HHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHH
Q 002100 844 LIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLL 918 (967)
Q Consensus 844 al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~ 918 (967)
+++.+|+ +.++..++. .|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++..|+ ..++
T Consensus 602 AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~ 680 (987)
T PRK09782 602 SLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALI 680 (987)
T ss_pred HHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999996 889988884 399999999999999999999999999999999999999999999999999999 5699
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhh
Q 002100 919 HLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATER 961 (967)
Q Consensus 919 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~ 961 (967)
+++|.++..+|++++|+..|+++++++|++..+...+..+..+
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQ 723 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHH
Confidence 9999999999999999999999999999998887666655544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-27 Score=268.01 Aligned_cols=471 Identities=14% Similarity=0.113 Sum_probs=372.5
Q ss_pred HHHHHhhcCC--hHHHHHHHHHHHHhCc--hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCc--------chhHHHHHh
Q 002100 463 LGVVMLEREE--YKDAQNWFKAAVEAGH--IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTP--------VGWMYQERS 530 (967)
Q Consensus 463 lG~~~~~~g~--y~~A~~~f~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~--------~g~~~~~~~ 530 (967)
.+..++..++ ++.|...|..+++..| .-+++|-|++.+.+|++..|..+|++++...|. .|.++...+
T Consensus 134 ~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~ 213 (1018)
T KOG2002|consen 134 QRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLG 213 (1018)
T ss_pred hhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhcc
Confidence 3444444444 5999999999999966 667778899999999999999999998774432 355556665
Q ss_pred hcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcC---cHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHH
Q 002100 531 LYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEEN---KLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGAL 606 (967)
Q Consensus 531 ~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~ 606 (967)
+.+.|+..|.+|++++|+++.++..+|.+..... .+..++..+.++...+| +|.++..++..|+..|+|..+.
T Consensus 214 ---~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 214 ---MSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred ---chhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHH
Confidence 4499999999999999999999999998776654 47789999999999999 9999999999999999999999
Q ss_pred HHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCC-hHHHHHHH
Q 002100 607 RDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGK-SLLRFRQS 685 (967)
Q Consensus 607 ~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~-~~~~~~~g 685 (967)
.....++...-.....- .+.|.+|..+...|+|++| ..+|.++++.+|++ ...++.+|
T Consensus 291 ~la~~ai~~t~~~~~~a---es~Y~~gRs~Ha~Gd~ekA------------------~~yY~~s~k~~~d~~~l~~~Glg 349 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKA---ESFYQLGRSYHAQGDFEKA------------------FKYYMESLKADNDNFVLPLVGLG 349 (1018)
T ss_pred HHHHHHHHhhhhhHHHH---HHHHHHHHHHHhhccHHHH------------------HHHHHHHHccCCCCccccccchh
Confidence 99999987753322221 1238899999999999999 89999999999998 77899999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcC----ChHHHHHHHHHHHhcccchHHHHHH-HH--Hhhhc
Q 002100 686 LLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTG----HREEALAKAEESISIQRSFEAFFLK-AY--ALADS 758 (967)
Q Consensus 686 ~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g----~~~eA~~~~~~al~~~p~~~~~~~~-~~--~la~~ 758 (967)
+.|+..|+++.|+.+|+++++..|++.+++..+|.+|...+ ..++|.....++++..|.+...++. +. ...+.
T Consensus 350 Qm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~ 429 (1018)
T KOG2002|consen 350 QMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP 429 (1018)
T ss_pred HHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh
Confidence 99999999999999999999999999999999999998876 6788999999999998866533321 11 21122
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc-----CcHH-------HHHHHHH
Q 002100 759 SLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI-----KHTR-------AHQGLAR 826 (967)
Q Consensus 759 ~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~-----~~~~-------a~~~la~ 826 (967)
....+-...++..|+.... +.....++|+|..++..|++.+|...|..|+.. ++.. ..+++|+
T Consensus 430 ~~sL~~~~~A~d~L~~~~~-----~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 430 WASLDAYGNALDILESKGK-----QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred HHHHHHHHHHHHHHHHcCC-----CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 1111112222222222211 133468888899999999999999888888773 1111 4778888
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHH----------------------------------Hcc-----------
Q 002100 827 VYHLKNQRKAAYDEMTKLIEKARNNASAYEKR----------------------------------SEY----------- 861 (967)
Q Consensus 827 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~----------------------------------~~~----------- 861 (967)
++...++++.|.+.|..+++.+|...++|..+ |.+
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 88888888888888877776666644433332 200
Q ss_pred -----------------------------------------CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHH
Q 002100 862 -----------------------------------------CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE 900 (967)
Q Consensus 862 -----------------------------------------~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 900 (967)
+.+++|++.|.++++.+|.+.++-..+|.|+...|++.+
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchH
Confidence 234789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCchhHHHHHHHHHhhh
Q 002100 901 AIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLD--PNHTDTLELYDKATERV 962 (967)
Q Consensus 901 Ai~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~~l~l~~r~~~~~ 962 (967)
|+..|.++.+-..+ .++|.++|.+|..+|+|-.|++.|+.++... -++.+++..+.|+--..
T Consensus 665 A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 665 ARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred HHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 99999999987664 5699999999999999999999999999876 46788988888875443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-25 Score=270.61 Aligned_cols=555 Identities=11% Similarity=-0.054 Sum_probs=389.7
Q ss_pred HHHHHhChHHHHHHHHHHHhhhhhhcCCchhHhhhhccchHHHHHHhhcchHHHHHHHHHHhccCcccccchHHHHHHHH
Q 002100 367 EYGLEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARERLAMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLERL 446 (967)
Q Consensus 367 ~~A~~~~~~~L~~~c~~~i~~~~~~~l~~~~~~~ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~l 446 (967)
--|++..+..+..+-..++...-.......++.+- -..+++-+...... ......++.+-+. ..+.+.+ +..+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~f~~a~~~~~~Gd~~~A--~~~l~~Al~~dP~n-~~~~~~LA~~yl~-~g~~~~A---~~~~ 101 (987)
T PRK09782 29 TSAEELGLSDYRHFVIYPRLDKALKAQKNNDEATA--IREFEYIHQQVPDN-IPLTLYLAEAYRH-FGHDDRA---RLLL 101 (987)
T ss_pred cccccCCCchHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHhCCCC-HHHHHHHHHHHHH-CCCHHHH---HHHH
Confidence 35666777777777665544333332322222221 12344334444333 3333444444332 1233333 4444
Q ss_pred HHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc--hhHHHHHHHH--------HHhcCChHHHHHHHHHHH
Q 002100 447 VESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH--IYSLVGVART--------KFKRGHKYSAYKLMNSLI 516 (967)
Q Consensus 447 ~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~--~~a~~~la~~--------~~~~g~~~~A~~~l~~~i 516 (967)
.+....+|.++..+..++.+ ++|++|+..|+++++.+| ..+...++.+ |.+.++..++++ .+.+
T Consensus 102 ~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~ 175 (987)
T PRK09782 102 EDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATF 175 (987)
T ss_pred HHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--Hhhh
Confidence 44555566666666666665 999999999999999977 4555555665 544444444444 2222
Q ss_pred hccCc-------chhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHh-cCcHHHHHHHHHHHhccCCChhH
Q 002100 517 SDYTP-------VGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVE-ENKLAAAITEINRIIGFKVSPDC 588 (967)
Q Consensus 517 ~~~~~-------~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~ 588 (967)
...+. ...+|..++.| ++|+..+.+.++..|.+...+..++.+|.. +++ ++|+..++..++ .++.+
T Consensus 176 ~~~~~~~vL~L~~~rlY~~l~dw---~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk--~d~~l 249 (987)
T PRK09782 176 AASPEGKTLRTDLLQRAIYLKQW---SQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF--TDPQS 249 (987)
T ss_pred CCCCCcHHHHHHHHHHHHHHhCH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc--cCHHH
Confidence 22211 14455666655 999999999999999999999999999998 477 888888665332 47888
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCchHHhhh----------------------------------------
Q 002100 589 LELRAWISIALEDYDGALRDVRALLTL---DPSYMMFYGQ---------------------------------------- 625 (967)
Q Consensus 589 ~~~la~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~---------------------------------------- 625 (967)
...++..|.+.|+.++|...+++.-.. +|.+......
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQY 329 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHH
Confidence 889999999999999998777653322 2222111000
Q ss_pred -------------------hh---------------------------hhhhHhhhHHHhhchhhHhhHHH-HHh-----
Q 002100 626 -------------------LH---------------------------GDNLVETLQPLVQQWSQADCWMQ-LYD----- 653 (967)
Q Consensus 626 -------------------~~---------------------------~~~~~~~l~~~~~~~~~A~~~~~-l~~----- 653 (967)
.. .....+......+++.+|..|.+ .|.
T Consensus 330 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (987)
T PRK09782 330 DAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA 409 (987)
T ss_pred HHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc
Confidence 00 00001111122223333322221 111
Q ss_pred ---------------hhcccc--------------------------ccchHHHHHHHHhcCCC--ChHHHHHHHHHHHH
Q 002100 654 ---------------RWSSVD--------------------------DIGSLAVVHHMLANDPG--KSLLRFRQSLLLLR 690 (967)
Q Consensus 654 ---------------~~~~~d--------------------------~~~al~~~~~~l~~~p~--~~~~~~~~g~~~~~ 690 (967)
+....+ ...+...+.+++..+|. ++.+++.+|.++..
T Consensus 410 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 410 RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence 110100 01123344455666677 88999999999987
Q ss_pred hcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHH
Q 002100 691 LNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQ 770 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~ 770 (967)
+++.+|+..+.+++...|++. ....+|.++...|++++|+..|++++...|.....+ .++......+....+..
T Consensus 490 -~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~----~la~all~~Gd~~eA~~ 563 (987)
T PRK09782 490 -TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLL----AAANTAQAAGNGAARDR 563 (987)
T ss_pred -CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHH----HHHHHHHHCCCHHHHHH
Confidence 899999999999999999865 466678888899999999999999988777655332 33333445567788999
Q ss_pred HHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 002100 771 LLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH-TRAHQGLARVYHLKNQRKAAYDEMTKLIEKAR 849 (967)
Q Consensus 771 ~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 849 (967)
.++.+++.. +.....+..++......|++++|+..|+++++.+| ..++.++|.++.++|++++|+..|+++++.+|
T Consensus 564 ~l~qAL~l~---P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P 640 (987)
T PRK09782 564 WLQQAEQRG---LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEP 640 (987)
T ss_pred HHHHHHhcC---CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 998888754 33345555666666677999999999999999554 45899999999999999999999999999999
Q ss_pred CCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHH
Q 002100 850 NNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAF 924 (967)
Q Consensus 850 ~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~ 924 (967)
+++.++..+|. .|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++..|+. .+....|++
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~ 720 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQ 720 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHH
Confidence 99999999994 3999999999999999999999999999999999999999999999999999995 588899999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCch
Q 002100 925 HDSMGDHLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 925 ~~~~g~~~~A~~~~~~al~~~P~~~ 949 (967)
.....+++.|.+.++++...+|.-.
T Consensus 721 ~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 721 NQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccch
Confidence 9999999999999999999999866
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=282.42 Aligned_cols=400 Identities=11% Similarity=0.008 Sum_probs=306.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhCchhH--HHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHH
Q 002100 462 QLGVVMLEREEYKDAQNWFKAAVEAGHIYS--LVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKM 539 (967)
Q Consensus 462 ~lG~~~~~~g~y~~A~~~f~~al~~~~~~a--~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~ 539 (967)
..-.+..-.|++++|+..|+++...++..+ +..+|.++...|++ ++|+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~------------------------------~~A~ 69 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQW------------------------------QNSL 69 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH------------------------------HHHH
Confidence 344566778999999999999998766444 66666655555443 7888
Q ss_pred HHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 540 MDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 540 ~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
..|+++++++|.++.++..+|.++...|++++|+..++++++..| ++. +..+|.++...|++++|+..++++++.+|+
T Consensus 70 ~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~ 148 (765)
T PRK10049 70 TLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ 148 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 888888888888888888888899999999999999999998888 777 888899999999999999999999999998
Q ss_pred chHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh-----HHHHHHHHHH-----
Q 002100 619 YMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS-----LLRFRQSLLL----- 688 (967)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~-----~~~~~~g~~~----- 688 (967)
+..++ ..++.++...++.++| +..++++.. .|... .....+..+.
T Consensus 149 ~~~~~------~~la~~l~~~~~~e~A------------------l~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 149 TQQYP------TEYVQALRNNRLSAPA------------------LGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred CHHHH------HHHHHHHHHCCChHHH------------------HHHHHhCCC-CHHHHHHHHHHHHHHHHHhhccccc
Confidence 88887 5556666666666666 555555444 33310 0111111111
Q ss_pred HHhcCH---HHHHHHHHHHHhcCCchhHH-------HHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhc
Q 002100 689 LRLNSQ---KAAMRSLRLARNYSTSEHEK-------LVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADS 758 (967)
Q Consensus 689 ~~~g~~---~~A~~~l~~al~~~p~~~~a-------~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~ 758 (967)
...+++ ++|+..++.+++..|.++.. .......++..|++++|+..|+++++..+..+
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P------------ 271 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIP------------ 271 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCC------------
Confidence 222344 77888888888664433322 22212234677999999999999887754211
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH------HHHHHHHHHHHHhC
Q 002100 759 SLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT------RAHQGLARVYHLKN 832 (967)
Q Consensus 759 ~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~------~a~~~la~~~~~~g 832 (967)
. .+...+|.+|...|++++|+..|+++++.++. .....++.++..+|
T Consensus 272 -------------------------~--~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 272 -------------------------P--WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred -------------------------H--HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 1 12333588999999999999999998875432 35677888889999
Q ss_pred CHHHHHHHHHHHHHHccC-------------C--HHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 002100 833 QRKAAYDEMTKLIEKARN-------------N--ASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLM 893 (967)
Q Consensus 833 ~~~~A~~~~~~al~~~p~-------------~--~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~ 893 (967)
++++|+..++++.+..|. + ..++..++. .+++++|+..+++++...|.++.++..+|.++.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999988763 1 234444442 299999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHH
Q 002100 894 DDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYD 956 (967)
Q Consensus 894 ~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~ 956 (967)
..|++++|++.++++++++|+ ...++.+|.++..+|++++|...++++++.+|+++.+..+-.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~ 468 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLAR 468 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999 468889999999999999999999999999999998766443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-26 Score=275.09 Aligned_cols=315 Identities=14% Similarity=0.079 Sum_probs=208.6
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
++|+..+..++...|++..+++.+|.+....|++++|+..|++++..+| ++.++..+|.++...|++++|+..|++++.
T Consensus 59 ~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 59 DVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred chhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666777777777777776666 666666667776667777777777777766
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQ 694 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~ 694 (967)
++|++..++ ..++.++...+++++| +..+.+++..+|..+..+...+ .+...|++
T Consensus 139 l~P~~~~a~------~~la~~l~~~g~~~eA------------------~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~ 193 (656)
T PRK15174 139 AFSGNSQIF------ALHLRTLVLMDKELQA------------------ISLARTQAQEVPPRGDMIATCL-SFLNKSRL 193 (656)
T ss_pred hCCCcHHHH------HHHHHHHHHCCChHHH------------------HHHHHHHHHhCCCCHHHHHHHH-HHHHcCCH
Confidence 666666666 4556666666666666 5666666666666666555443 35666777
Q ss_pred HHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHH
Q 002100 695 KAAMRSLRLARNYSTS-EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLE 773 (967)
Q Consensus 695 ~~A~~~l~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le 773 (967)
++|+..++++++.+|. .......++.++...|++++|+..++++++.+|++.
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~--------------------------- 246 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA--------------------------- 246 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH---------------------------
Confidence 7777776666666542 223334456666666777777777777766666444
Q ss_pred HHhcCCCCCCchHHHHHHhHHHHHhcccHHH----HHHHHHHHhccCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002100 774 EALRCPSDGLRKGQALNNLGSVYVDCEKLDL----AADCYMNALNIKH--TRAHQGLARVYHLKNQRKAAYDEMTKLIEK 847 (967)
Q Consensus 774 ~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~----A~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 847 (967)
.+++++|.++...|++++ |+..|+++++.+| ..++..+|.++..+|++++|+..++++++.
T Consensus 247 -------------~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 247 -------------ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred -------------HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 566666777777776664 6666776666333 346666677777777777777777777777
Q ss_pred ccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 002100 848 ARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL 915 (967)
Q Consensus 848 ~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~ 915 (967)
+|+++.++..++. .|++++|+..|+++++.+|++...+..+|.++...|++++|+..|+++++..|+.
T Consensus 314 ~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 314 HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 7766666666653 2666777777777777777766666666777777788888888888887777773
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-26 Score=242.71 Aligned_cols=432 Identities=12% Similarity=0.100 Sum_probs=317.7
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCC
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCS 534 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~ 534 (967)
..+.++-..|+-++..|+|++||++|..|++..|....++ .+...+|...+.|
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFY-------------------------sNraAcY~~lgd~-- 165 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFY-------------------------SNRAACYESLGDW-- 165 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhh-------------------------hhHHHHHHHHhhH--
Confidence 4466788899999999999999999999999988754444 2336677777766
Q ss_pred hHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 535 GKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV--SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
++-+++..+|++++|+...+++.|+.++..+|++++|+....-.--+.- +...-..+-+++-. .|.....+-
T Consensus 166 -~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~ 239 (606)
T KOG0547|consen 166 -EKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEK 239 (606)
T ss_pred -HHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHh
Confidence 9999999999999999999999999999999999999988765432222 22211111122211 122222222
Q ss_pred HH--hCCCchHHhhhhhh---hhhHhhhHHHhhchhhHhh-HHHHHhhhccccc---cchHHHHHHHHhc----CCCC--
Q 002100 613 LT--LDPSYMMFYGQLHG---DNLVETLQPLVQQWSQADC-WMQLYDRWSSVDD---IGSLAVVHHMLAN----DPGK-- 677 (967)
Q Consensus 613 l~--l~p~~~~~~~~~~~---~~~~~~l~~~~~~~~~A~~-~~~l~~~~~~~d~---~~al~~~~~~l~~----~p~~-- 677 (967)
+. ..|.-+.+-. +.+ .+.-..........+++|. .+.-++......+ ..+...+.+.... -..+
T Consensus 240 ~k~nr~p~lPS~~f-i~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~ 318 (606)
T KOG0547|consen 240 LKENRPPVLPSATF-IASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEI 318 (606)
T ss_pred hcccCCCCCCcHHH-HHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcccccc
Confidence 22 1111111000 000 0000000000000011100 0000110000000 0011111111100 0111
Q ss_pred -------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Q 002100 678 -------SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFL 750 (967)
Q Consensus 678 -------~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 750 (967)
...+...|..++-.|++..|...|+.++.++|.+...|..+|.+|.+..+.++-.+.|.+|..++|+++
T Consensus 319 d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~---- 394 (606)
T KOG0547|consen 319 DAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP---- 394 (606)
T ss_pred chhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC----
Confidence 455667788888999999999999999999999999999999999999999999999999999999777
Q ss_pred HHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHH
Q 002100 751 KAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVY 828 (967)
Q Consensus 751 ~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~ 828 (967)
..|+.+|.+++-.++|++|+..|++++.++|.. ++..++-+.
T Consensus 395 ------------------------------------dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~ 438 (606)
T KOG0547|consen 395 ------------------------------------DVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCAL 438 (606)
T ss_pred ------------------------------------chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH
Confidence 899999999999999999999999999977765 888999999
Q ss_pred HHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCC------CchHHHHHHHHHHh-CCC
Q 002100 829 HLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPM------RTYPYRYRAAVLMD-DHK 897 (967)
Q Consensus 829 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~------~~~~~~~la~~~~~-~g~ 897 (967)
++++++++++..|+.+++..|+.+++|...++. ++++.|++.|++|+++.|. ++.++...|.+..+ .++
T Consensus 439 Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d 518 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhh
Confidence 999999999999999999999999999998853 8999999999999999999 77777777765443 489
Q ss_pred HHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 002100 898 EAEAIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 898 ~~eAi~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~ 960 (967)
+.+|+..+++|++++|..+ ++..+|.+..++|+.++|++.|++++.+.-.-.+++.+++-.+-
T Consensus 519 ~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a~s~aeA 582 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMVHAYSLAEA 582 (606)
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999965 99999999999999999999999999999888888887765543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-26 Score=273.53 Aligned_cols=348 Identities=13% Similarity=0.029 Sum_probs=308.8
Q ss_pred CCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhh
Q 002100 551 TLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGD 629 (967)
Q Consensus 551 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 629 (967)
++..-....+..+...|++++|+..++.++...| ++++++.+|.+....|++++|+..|++++..+|++..++
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~------ 113 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDV------ 113 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHH------
Confidence 3444455667888999999999999999999999 899999999999999999999999999999999999998
Q ss_pred hhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 002100 630 NLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST 709 (967)
Q Consensus 630 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p 709 (967)
..++.++...+++++| +..+.++++.+|+++.++..++.++...|++++|+..+++++...|
T Consensus 114 ~~la~~l~~~g~~~~A------------------i~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P 175 (656)
T PRK15174 114 LLVASVLLKSKQYATV------------------ADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP 175 (656)
T ss_pred HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence 7889999999999999 9999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHH
Q 002100 710 SEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQAL 789 (967)
Q Consensus 710 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~ 789 (967)
+++.++..++ .+...|++++|+..+++++..+|... ....
T Consensus 176 ~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~---------------------------------------~~~~ 215 (656)
T PRK15174 176 PRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALER---------------------------------------QESA 215 (656)
T ss_pred CCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcc---------------------------------------hhHH
Confidence 9988887764 48889999999999999988765211 0234
Q ss_pred HHhHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHccCCHHHHHHHHcc--
Q 002100 790 NNLGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLARVYHLKNQRKA----AYDEMTKLIEKARNNASAYEKRSEY-- 861 (967)
Q Consensus 790 ~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~~~~~-- 861 (967)
..++.++...|++++|+..|+++++.+ ...++..+|.++..+|++++ |+..|+++++.+|+++.++..++..
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 295 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI 295 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 556788899999999999999999954 45589999999999999986 8999999999999999999999853
Q ss_pred --CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHH
Q 002100 862 --CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDC 938 (967)
Q Consensus 862 --~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~ 938 (967)
|++++|+..++++++++|+++.++.++|.++...|++++|+..|+++++.+|+.. .+..+|.++...|++++|+..|
T Consensus 296 ~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 296 RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999954 5556799999999999999999
Q ss_pred HHHHhcCCCch-----hHHHHHHHHHhhh
Q 002100 939 EAALCLDPNHT-----DTLELYDKATERV 962 (967)
Q Consensus 939 ~~al~~~P~~~-----~~l~l~~r~~~~~ 962 (967)
+++++.+|++. ++...+.++.+..
T Consensus 376 ~~al~~~P~~~~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 376 EHYIQARASHLPQSFEEGLLALDGQISAV 404 (656)
T ss_pred HHHHHhChhhchhhHHHHHHHHHHHHHhc
Confidence 99999998843 3444444444433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-24 Score=263.04 Aligned_cols=381 Identities=13% Similarity=0.014 Sum_probs=280.6
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhh
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQL 626 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 626 (967)
..|.++.-..-...+..-.|++++|++.+.++...+| ...++..+|.++...|++++|+..|+++++++|++..++
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~--- 86 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQ--- 86 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---
Confidence 4455555555556667777778888877777777666 666777777778888888888888888887777777766
Q ss_pred hhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002100 627 HGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARN 706 (967)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~ 706 (967)
..++.++...+++++| +..++++++.+|.++. +..+|.++...|++++|+..++++++
T Consensus 87 ---~~la~~l~~~g~~~eA------------------~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 87 ---RGLILTLADAGQYDEA------------------LVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred ---HHHHHHHHHCCCHHHH------------------HHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5566677777777777 7777777777777777 77778888888888888888888888
Q ss_pred cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHH-------HHHHHHHhhhcCCCCCch---HHHHHHHHHHh
Q 002100 707 YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEA-------FFLKAYALADSSLNPESS---AYVIQLLEEAL 776 (967)
Q Consensus 707 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-------~~~~~~~la~~~~~~~~~---~~a~~~le~~~ 776 (967)
..|++..++..++.++...++.++|+..++++.. .|+... .......+.......+.. +.++..++.+.
T Consensus 145 ~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 145 RAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 8888877777778877777777778877776665 543210 001111111111111222 45666666666
Q ss_pred cCCCCCC----chHHHHHH-hHHHHHhcccHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002100 777 RCPSDGL----RKGQALNN-LGSVYVDCEKLDLAADCYMNALNIK---HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKA 848 (967)
Q Consensus 777 ~~~~~~~----~~~~a~~~-lg~~~~~~g~~~~A~~~~~~Al~~~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 848 (967)
+.....| ....+... ++ ++...|++++|+..|+++++.+ |..+...+|.+|..+|++++|+..|+++++.+
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred hhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 5433332 22233333 44 4467799999999999999864 55567778999999999999999999999988
Q ss_pred cCCH----HHHHHHH----ccCChHHHHHHHHHhhccCCCC---------------chHHHHHHHHHHhCCCHHHHHHHH
Q 002100 849 RNNA----SAYEKRS----EYCDRDMAKSDLSMATQLDPMR---------------TYPYRYRAAVLMDDHKEAEAIAEL 905 (967)
Q Consensus 849 p~~~----~~~~~~~----~~~~~~~A~~~l~~al~l~p~~---------------~~~~~~la~~~~~~g~~~eAi~~~ 905 (967)
|.++ ..+..+. ..+++++|+..++++.+.+|.. ..++..+|.++...|++++|++.+
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7652 2233322 3499999999999999988732 346678999999999999999999
Q ss_pred HHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 002100 906 SRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELY 955 (967)
Q Consensus 906 ~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~ 955 (967)
++++...|+. .++..+|.++...|++++|++.++++++++|++..+.-..
T Consensus 383 ~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 383 RELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 9999999994 5999999999999999999999999999999997764433
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=272.80 Aligned_cols=194 Identities=15% Similarity=0.246 Sum_probs=169.6
Q ss_pred ccccccccccCCCCcccEEEEEc-CeEEEehhHHHhccCHHHHHhhcCCCCCCc-cceEEeccCCCCHHHHHHHHHhHcC
Q 002100 241 DISMEDEECSTSDEDWDMSFCIG-NDEIRCVRYKIASLSRPFRTMLYGGFIESR-REKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 241 ~~~~~~~~~~~~~~~~Dv~~~v~-~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~-~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
.+...+.+++.++.+|||+|+|+ |++|+|||.|||++|+||++||.++|.|+. +.+|+|.+ +++++|+.+|+|+||
T Consensus 11 ~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~--v~~~~~~~ll~y~Yt 88 (557)
T PHA02713 11 RVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQM--FDKDAVKNIVQYLYN 88 (557)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEecc--CCHHHHHHHHHHhcC
Confidence 34466677888899999999997 899999999999999999999999999874 78999976 999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhh-------
Q 002100 319 KMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPC------- 391 (967)
Q Consensus 319 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~------- 391 (967)
|++ +.+++++||.+|++|+++.|++.|.++|.+.++ ++||+.++.++..+.+..|.+.|.+|+++||..
T Consensus 89 ~~i---~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~-~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef 164 (557)
T PHA02713 89 RHI---SSMNVIDVLKCADYLLIDDLVTDCESYIKDYTN-HDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAF 164 (557)
T ss_pred CCC---CHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCC-ccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhh
Confidence 974 789999999999999999999999999999999 999999999999999999999999999999995
Q ss_pred -cCCchhHhhhhccch-HHHHHHhhcchHHHHHHHHHHhccCcccccchHHHHHHHH
Q 002100 392 -SMQNPNVMRIFCSAE-ARERLAMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLERL 446 (967)
Q Consensus 392 -~l~~~~~~~ll~s~~-~~~r~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~l 446 (967)
.++.+.+.++|.+++ +. +..|..+|.++++|+..++..+. ...++++++
T Consensus 165 ~~L~~~~l~~lL~~d~~l~-----v~~Ee~v~eav~~W~~~d~~~r~-~~~~ll~~V 215 (557)
T PHA02713 165 KKTVFEILFDIISTNDNVY-----LYREGYKVTILLKWLEYNYITEE-QLLCILSCI 215 (557)
T ss_pred hhCCHHHHHHHhccccccC-----CCcHHHHHHHHHHHHhcCHHHHH-HHhhhHhhh
Confidence 455566666777765 56 77889999999999998865443 344555544
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-26 Score=266.82 Aligned_cols=200 Identities=18% Similarity=0.228 Sum_probs=185.4
Q ss_pred ccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
...+...+..++..+.+|||++.+++++|+|||.|||++||||++||.++++|+.+.+|+|.+ +++++|+.+++|+||
T Consensus 20 ~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~--v~~~~l~~ll~y~Yt 97 (571)
T KOG4441|consen 20 SKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEG--VDPETLELLLDYAYT 97 (571)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEec--CCHHHHHHHHHHhhc
Confidence 334445566778889999999999999999999999999999999999999999999999987 999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhh--------
Q 002100 319 KMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELP-------- 390 (967)
Q Consensus 319 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~-------- 390 (967)
+++ .++.++|++|+.+|++|+++.+++.|..||.+.++ ++||+.+..+|+.|++++|.+.+..|+.+||.
T Consensus 98 ~~i-~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~-~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eef 175 (571)
T KOG4441|consen 98 GKL-EISEDNVQELLEAASLLQIPEVVDACCEFLESQLD-PSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEF 175 (571)
T ss_pred ceE-EechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHh
Confidence 999 99999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hcCCchhHhhhhccchHHHHHHhhcchHHHHHHHHHHhccCcccccchHHHHHHHHH
Q 002100 391 CSMQNPNVMRIFCSAEARERLAMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLERLV 447 (967)
Q Consensus 391 ~~l~~~~~~~ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~l~ 447 (967)
..++.+++..++.+++++ +.+|..+|.+++.|+..+...+..+..++++.+.
T Consensus 176 l~L~~~~l~~ll~~d~l~-----v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr 227 (571)
T KOG4441|consen 176 LLLSLEELIGLLSSDDLN-----VDSEEEVFEAAMRWVKHDFEEREEHLPALLEAVR 227 (571)
T ss_pred hCCCHHHHHhhccccCCC-----cCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcC
Confidence 467778888899999999 9999999999999999988777778888777654
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-26 Score=264.60 Aligned_cols=175 Identities=17% Similarity=0.144 Sum_probs=156.3
Q ss_pred cccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHH
Q 002100 248 ECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPR 327 (967)
Q Consensus 248 ~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~ 327 (967)
+++-++.+|||++++| ++|+|||+|||++||||++||.++|.|++. +|++...++++++|+.+|+|+|||++ .++.+
T Consensus 15 ~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l-~it~~ 91 (480)
T PHA02790 15 ALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKV-YIDSH 91 (480)
T ss_pred HHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeE-EEecc
Confidence 3445688999999765 599999999999999999999999999965 56653124999999999999999999 99999
Q ss_pred HHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhhcCCc--hhH-----hh
Q 002100 328 LVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQN--PNV-----MR 400 (967)
Q Consensus 328 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~l~~--~~~-----~~ 400 (967)
+|++||.+|++|+++.+++.|.+||.+.++ ++||+.++.+|+.|++++|.+.|.+||++||...... ++| .+
T Consensus 92 nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~-~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~~~ 170 (480)
T PHA02790 92 NVVNLLRASILTSVEFIIYTCINFILRDFR-KEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMKL 170 (480)
T ss_pred cHHHHHHHHHHhChHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999966543 333 56
Q ss_pred hhccchHHHHHHhhcchHHHHHHHHHHhccC
Q 002100 401 IFCSAEARERLAMVGHASFVLYYFLSQIGME 431 (967)
Q Consensus 401 ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~ 431 (967)
+|.++++. +.+|..+|.+++.|+..+
T Consensus 171 lLssd~L~-----v~~Ee~V~eav~~Wl~~~ 196 (480)
T PHA02790 171 ILESDELN-----VPDEDYVVDFVIKWYMKR 196 (480)
T ss_pred hcccccCC-----CccHHHHHHHHHHHHHhh
Confidence 88888888 889999999999999853
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=266.44 Aligned_cols=184 Identities=16% Similarity=0.260 Sum_probs=168.4
Q ss_pred cCCCCcccEEEEE--cCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHH
Q 002100 250 STSDEDWDMSFCI--GNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPR 327 (967)
Q Consensus 250 ~~~~~~~Dv~~~v--~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~ 327 (967)
+.++.+|||+|+| +|++|+|||.|||++|+||++||.++|. +.+|+|+ + ++++|+.+|+|+|||++ .++.+
T Consensus 4 ~~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~--~-~~~~~~~~l~y~Ytg~~-~i~~~ 76 (534)
T PHA03098 4 FELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN--I-DYDSFNEVIKYIYTGKI-NITSN 76 (534)
T ss_pred cccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec--C-CHHHHHHHHHHhcCCce-EEcHH
Confidence 3468899999998 9999999999999999999999999998 5689995 4 99999999999999999 89999
Q ss_pred HHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhh--------hcCCchhHh
Q 002100 328 LVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELP--------CSMQNPNVM 399 (967)
Q Consensus 328 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~--------~~l~~~~~~ 399 (967)
++.+|+.+|++|+++.|++.|+++|.+.++ .+||+.++.+|..|++..|.+.|.+||.+||. ..++.+.+.
T Consensus 77 ~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~-~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~ 155 (534)
T PHA03098 77 NVKDILSIANYLIIDFLINLCINYIIKIID-DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELI 155 (534)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHH
Confidence 999999999999999999999999999999 99999999999999999999999999999998 456677788
Q ss_pred hhhccchHHHHHHhhcchHHHHHHHHHHhccCcccccchHHHHHHHH
Q 002100 400 RIFCSAEARERLAMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLERL 446 (967)
Q Consensus 400 ~ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~l 446 (967)
.+|.++++. +.+|..++.+++.|+..+...+.....++++++
T Consensus 156 ~ll~~~~L~-----v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~v 197 (534)
T PHA03098 156 KILSDDKLN-----VSSEDVVLEIIIKWLTSKKNNKYKDICLILKVL 197 (534)
T ss_pred HHhcCCCcC-----cCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhc
Confidence 888888888 889999999999999988777777766666654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-23 Score=220.48 Aligned_cols=426 Identities=16% Similarity=0.171 Sum_probs=315.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHH
Q 002100 460 FHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKM 539 (967)
Q Consensus 460 ~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~ 539 (967)
....|...+..|+|+.|+.+|..|+.++|.....+ .+...+|..++.| .+|+
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvly-------------------------Snrsaa~a~~~~~---~~al 56 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLY-------------------------SNRSAAYASLGSY---EKAL 56 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchh-------------------------cchHHHHHHHhhH---HHHH
Confidence 44678899999999999999999999988643332 3446677888877 9999
Q ss_pred HHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc------------------
Q 002100 540 MDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE------------------ 600 (967)
Q Consensus 540 ~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g------------------ 600 (967)
++-.+.++++|+-+..|..+|..+.-+|+|++|+..|.+.++.+| +...+..++.++...-
T Consensus 57 ~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~ 136 (539)
T KOG0548|consen 57 KDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANL 136 (539)
T ss_pred HHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999 8888888888883221
Q ss_pred ---CHHHHHHHHHHHHHh---CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhcc-----cccc--------
Q 002100 601 ---DYDGALRDVRALLTL---DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSS-----VDDI-------- 661 (967)
Q Consensus 601 ---~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~-----~d~~-------- 661 (967)
++-..-..|.+.++. +|.+...+.. .-.+-...+.....+.. .+...+. ....
T Consensus 137 p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~------d~r~m~a~~~l~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~ 208 (539)
T KOG0548|consen 137 PLTNYSLSDPAYVKILEIIQKNPTSLKLYLN------DPRLMKADGQLKGVDEL--LFYASGIEILASMAEPCKQEHNGF 208 (539)
T ss_pred hhhhhhhccHHHHHHHHHhhcCcHhhhcccc------cHHHHHHHHHHhcCccc--cccccccccCCCCCCcccccCCCC
Confidence 011112233333333 3333332211 00000000000000000 0000000 0000
Q ss_pred chHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 662 GSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISI 741 (967)
Q Consensus 662 ~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 741 (967)
.-+....+-.+ .-......-.+|.......++..|++.|..+++++ .+...+.+.+.+|+..|.+.+.+.....+++.
T Consensus 209 ~~~~d~~ee~~-~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~ 286 (539)
T KOG0548|consen 209 PIIEDNTEERR-VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEV 286 (539)
T ss_pred CccchhHHHHH-HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH
Confidence 00000000000 00112334578999999999999999999999999 88889999999999999999999999998866
Q ss_pred ccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHH
Q 002100 742 QRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAH 821 (967)
Q Consensus 742 ~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~ 821 (967)
.......+. + ...++..+|..|...++++.|+.+|++++....+
T Consensus 287 gre~rad~k--------------------l-------------Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--- 330 (539)
T KOG0548|consen 287 GRELRADYK--------------------L-------------IAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--- 330 (539)
T ss_pred hHHHHHHHH--------------------H-------------HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---
Confidence 653321110 0 1245556899999999999999999999884433
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK 897 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~ 897 (967)
..+.-.....+++........-.+|..+......|. .+++..|+..|.+|+..+|+++..|.++|.+|.+.+.
T Consensus 331 ---~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~ 407 (539)
T KOG0548|consen 331 ---PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGE 407 (539)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhh
Confidence 455666777888888888888888877665555563 3999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 898 EAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 898 ~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
+..|++..+++++++|+. .+|...|.++..+.+|++|++.|+++++.+|++.++.+.+.|+.+..
T Consensus 408 ~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 408 YPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999995 58999999999999999999999999999999999999999988753
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-23 Score=218.27 Aligned_cols=392 Identities=18% Similarity=0.142 Sum_probs=295.1
Q ss_pred ccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHH
Q 002100 518 DYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWIS 596 (967)
Q Consensus 518 ~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~ 596 (967)
.+.+.|+-++..+.| ++||++|++||+++|+.+..|.+++.+|...|+|++-++...++++++| ...+++.++..+
T Consensus 117 ~lK~~GN~~f~~kkY---~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKY---DEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAH 193 (606)
T ss_pred HHHhhhhhhhhcccH---HHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence 345668888888888 9999999999999999999999999999999999999999999999999 789999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhC-CCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHh--hhccccccchHHHHHHHHhc
Q 002100 597 IALEDYDGALRDVRALLTLD-PSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYD--RWSSVDDIGSLAVVHHMLAN 673 (967)
Q Consensus 597 ~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~--~~~~~d~~~al~~~~~~l~~ 673 (967)
..+|++++|+.+....--+. =++.... -+...+....+.- ++. +.+. +-.-......+..|-..+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~------~~~eR~Lkk~a~~-ka~---e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIE------PMAERVLKKQAMK-KAK---EKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhH------HHHHHHHHHHHHH-HHH---HhhcccCCCCCCcHHHHHHHHhhccc
Confidence 99999999999876543321 1111111 1111111111110 110 0011 00111111123333333332
Q ss_pred CCC-------C-hHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcC----Cc---------hhHHHHHHHHHHHHcCChH
Q 002100 674 DPG-------K-SLLRFRQSLLLLRLN---SQKAAMRSLRLARNYS----TS---------EHEKLVYEGWILYDTGHRE 729 (967)
Q Consensus 674 ~p~-------~-~~~~~~~g~~~~~~g---~~~~A~~~l~~al~~~----p~---------~~~a~~~lg~~~~~~g~~~ 729 (967)
+|. + +..-..-+.-++..+ .|..|...+.+..... .. .++++...|..++-.|++-
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 221 1 122222222222223 6777777776654321 11 2567888899999999999
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHH
Q 002100 730 EALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCY 809 (967)
Q Consensus 730 eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~ 809 (967)
.|...++++|+++|.+. ..|..+|.+|.+..+.++-...|
T Consensus 344 ~a~~d~~~~I~l~~~~~----------------------------------------~lyI~~a~~y~d~~~~~~~~~~F 383 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFN----------------------------------------SLYIKRAAAYADENQSEKMWKDF 383 (606)
T ss_pred hhhhhHHHHHhcCcccc----------------------------------------hHHHHHHHHHhhhhccHHHHHHH
Confidence 99999999999999665 55888999999999999999999
Q ss_pred HHHhccCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH--cc--CChHHHHHHHHHhhccCCCCch
Q 002100 810 MNALNIKHT--RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS--EY--CDRDMAKSDLSMATQLDPMRTY 883 (967)
Q Consensus 810 ~~Al~~~~~--~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~--~~--~~~~~A~~~l~~al~l~p~~~~ 883 (967)
++|..+++. ++|+.+|.+++.++++++|+..|++++.++|+++.+|.+++ .| +++++++..|+.+.+.-|+.++
T Consensus 384 ~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~E 463 (606)
T KOG0547|consen 384 NKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPE 463 (606)
T ss_pred HHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 999997765 49999999999999999999999999999999999999988 34 7899999999999999999999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCchhHHHHH
Q 002100 884 PYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-------QLLHLRAAFHDS-MGDHLHTQRDCEAALCLDPNHTDTLELY 955 (967)
Q Consensus 884 ~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-------~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~P~~~~~l~l~ 955 (967)
.+...|.++..++++++|++.|.+++++.|.. ..+...|.+..+ .+|+.+|+..+++|+++||.-..+.+.+
T Consensus 464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tl 543 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETL 543 (606)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHH
Confidence 99999999999999999999999999999982 134444433222 2899999999999999999988887777
Q ss_pred HHHHhhh
Q 002100 956 DKATERV 962 (967)
Q Consensus 956 ~r~~~~~ 962 (967)
.+++=+.
T Consensus 544 aq~~lQ~ 550 (606)
T KOG0547|consen 544 AQFELQR 550 (606)
T ss_pred HHHHHHH
Confidence 7765443
|
|
| >KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-26 Score=233.02 Aligned_cols=190 Identities=23% Similarity=0.326 Sum_probs=168.6
Q ss_pred ccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
.++++.+.++.+.+.+++||+|+|++++|+|||+|||+||.|||+|++|+|.|+.+..|.+.+ -..++|+++|+||||
T Consensus 28 ~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~--t~~eAF~~lLrYiYt 105 (620)
T KOG4350|consen 28 SNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQE--TNSEAFRALLRYIYT 105 (620)
T ss_pred ccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccccc--ccHHHHHHHHHHHhh
Confidence 445566777888999999999999999999999999999999999999999999999999987 889999999999999
Q ss_pred CCCC--CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhhcCCch
Q 002100 319 KMLD--SFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNP 396 (967)
Q Consensus 319 ~~~~--~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~l~~~ 396 (967)
|++. .+..+.+++.|.+|++|+...|.....++|+..+. .+|++.+++.|..|++++|.+.|+.|+.+|....+..+
T Consensus 106 g~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~-~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~ 184 (620)
T KOG4350|consen 106 GKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILK-NENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDP 184 (620)
T ss_pred cceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHc-ccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCc
Confidence 9996 56788899999999999999999999999999999 99999999999999999999999999999999888887
Q ss_pred hHhhhhccchHHHHHHh---hcchHHHHHHHHHHhccCc
Q 002100 397 NVMRIFCSAEARERLAM---VGHASFVLYYFLSQIGMEE 432 (967)
Q Consensus 397 ~~~~ll~s~~~~~r~~~---~~~e~~~l~~~l~~l~~~~ 432 (967)
.|..+-+ +.+.+-|.. ..++..+|.++..|.....
T Consensus 185 sFn~LSk-~sL~e~l~RDsFfApE~~IFlAv~~W~~~Ns 222 (620)
T KOG4350|consen 185 SFNRLSK-DSLKELLARDSFFAPELKIFLAVRSWHQNNS 222 (620)
T ss_pred chhhhhH-HHHHHHHhhhcccchHHHHHHHHHHHHhcCc
Confidence 7765433 334433333 4577889999999998654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-21 Score=233.24 Aligned_cols=444 Identities=14% Similarity=0.046 Sum_probs=307.9
Q ss_pred hchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhH--HHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHH
Q 002100 452 ESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYS--LVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQER 529 (967)
Q Consensus 452 ~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a--~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~ 529 (967)
-.|..+...+..+.+.++.|+|+.|+..|+++++.+|... ..-++.++...|+.
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~------------------------ 84 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRD------------------------ 84 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCc------------------------
Confidence 3445566788899999999999999999999999988652 33555555444444
Q ss_pred hhcCChHHHHHHHHHhHhhCCCCchhHHHH--HHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHH
Q 002100 530 SLYCSGKEKMMDLNTATELDPTLSYPYKYR--AILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGAL 606 (967)
Q Consensus 530 ~~y~~~~~A~~~~~~al~l~P~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~ 606 (967)
++|+..+++++ +|.+...+..+ |.++..+|++++|++.|+++++.+| ++.++..++.+|...++.++|+
T Consensus 85 ------~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl 156 (822)
T PRK14574 85 ------QEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVL 156 (822)
T ss_pred ------HHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHH
Confidence 66777777776 44444444444 6677777777777777777777777 6777777777777777777777
Q ss_pred HHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHH
Q 002100 607 RDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSL 686 (967)
Q Consensus 607 ~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~ 686 (967)
+.+++++..+|++.... .++.++...+++.+| +..++++++.+|.+..++..+..
T Consensus 157 ~~l~~l~~~dp~~~~~l-------~layL~~~~~~~~~A------------------L~~~ekll~~~P~n~e~~~~~~~ 211 (822)
T PRK14574 157 KQATELAERDPTVQNYM-------TLSYLNRATDRNYDA------------------LQASSEAVRLAPTSEEVLKNHLE 211 (822)
T ss_pred HHHHHhcccCcchHHHH-------HHHHHHHhcchHHHH------------------HHHHHHHHHhCCCCHHHHHHHHH
Confidence 77777777777743322 122333333333334 77777777777777777777777
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchhHHHHHH--HHHHHH---------cC---ChHHHHHHHHHHHh---cccchHHHH
Q 002100 687 LLLRLNSQKAAMRSLRLARNYSTSEHEKLVYE--GWILYD---------TG---HREEALAKAEESIS---IQRSFEAFF 749 (967)
Q Consensus 687 ~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~l--g~~~~~---------~g---~~~eA~~~~~~al~---~~p~~~~~~ 749 (967)
++.+.|-...|.+..++--.........+... +.-..+ .. -.+.|+..++..+. ..|.....+
T Consensus 212 ~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~ 291 (822)
T PRK14574 212 ILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADY 291 (822)
T ss_pred HHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHH
Confidence 77777777777765544222211111111111 111111 11 23446666666665 333322222
Q ss_pred HHHH-HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC------cHH--H
Q 002100 750 LKAY-ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK------HTR--A 820 (967)
Q Consensus 750 ~~~~-~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~------~~~--a 820 (967)
..+. .---.....+....++..++.+......-|. .+....|..|+..++.++|+..|+.++... +.. .
T Consensus 292 ~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~--y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~ 369 (822)
T PRK14574 292 QRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD--YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLD 369 (822)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHH
Confidence 1111 0000111233456666666666654444343 456678999999999999999999998843 112 3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccC---------------CHHHHHHHHc----cCChHHHHHHHHHhhccCCCC
Q 002100 821 HQGLARVYHLKNQRKAAYDEMTKLIEKARN---------------NASAYEKRSE----YCDRDMAKSDLSMATQLDPMR 881 (967)
Q Consensus 821 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~ 881 (967)
...|-.+|...+++++|..++++..+..|- -..+...++. .|+..+|+..+++.+...|.+
T Consensus 370 ~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n 449 (822)
T PRK14574 370 ADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN 449 (822)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 577889999999999999999999985551 1223333332 299999999999999999999
Q ss_pred chHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHH
Q 002100 882 TYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLEL 954 (967)
Q Consensus 882 ~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l 954 (967)
...+..+|.++...|++.+|...++++..++|+. .+...+|.++..++++.+|....+++++.+|+++.+..+
T Consensus 450 ~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l 523 (822)
T PRK14574 450 QNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQEL 523 (822)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHH
Confidence 9999999999999999999999999999999995 588899999999999999999999999999999988763
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=206.08 Aligned_cols=343 Identities=19% Similarity=0.201 Sum_probs=250.6
Q ss_pred chhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc
Q 002100 522 VGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE 600 (967)
Q Consensus 522 ~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g 600 (967)
+|..+..++++ ..|+..|..|++.+|++..+++.+|.+|+.+|+-..|+..+++++++.| ...+...+|.+++++|
T Consensus 44 lGk~lla~~Q~---sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQL---SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhH---HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 35566666766 9999999999999999999999999999999999999999999999999 6779999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHH
Q 002100 601 DYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLL 680 (967)
Q Consensus 601 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~ 680 (967)
++++|..+|+++|+.+|++...... +..++.+..+..... ++-......|-..++..+.++++..|-+..+
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~ea---qskl~~~~e~~~l~~------ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l 191 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEA---QSKLALIQEHWVLVQ------QLKSASGSGDCQNAIEMITHLLEIQPWDASL 191 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHH---HHHHHhHHHHHHHHH------HHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence 9999999999999999976544411 122233332221111 2233345566677899999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCC
Q 002100 681 RFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSL 760 (967)
Q Consensus 681 ~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~ 760 (967)
+..++.+|...|++..|+..++.+-++..++.+.++.++.+++..|+.+.++....+.++++|+....|
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf----------- 260 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF----------- 260 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999765111
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHH
Q 002100 761 NPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDE 840 (967)
Q Consensus 761 ~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~ 840 (967)
-.|.+.++..+.++..+++ ...++|.++++.
T Consensus 261 ---------------------------------~~YKklkKv~K~les~e~~----------------ie~~~~t~cle~ 291 (504)
T KOG0624|consen 261 ---------------------------------PFYKKLKKVVKSLESAEQA----------------IEEKHWTECLEA 291 (504)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHH----------------HhhhhHHHHHHH
Confidence 0112222222222222222 233455556666
Q ss_pred HHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHH
Q 002100 841 MTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLH 919 (967)
Q Consensus 841 ~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~ 919 (967)
.++.++.+|..+.+ .......+..++...+++.+||..+.++++++|++ +++.
T Consensus 292 ge~vlk~ep~~~~i--------------------------r~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 292 GEKVLKNEPEETMI--------------------------RYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred HHHHHhcCCcccce--------------------------eeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 66666555542111 11122234455666667777777777777777663 4666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 920 LRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 920 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
.+|.+|+....|+.|+.+|++|++.+|+|..+.+-+.+++...
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlk 388 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLK 388 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 6777777777777777777777777777776666666555443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-21 Score=200.63 Aligned_cols=421 Identities=14% Similarity=0.109 Sum_probs=286.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHH
Q 002100 460 FHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKM 539 (967)
Q Consensus 460 ~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~ 539 (967)
.+.+|..|+..++|+.|.-.++...+....+.. -.+.+..|+.+.-... ...+........ ....+
T Consensus 81 ~y~laks~fd~kEf~Raa~fL~~~~s~k~~FL~---lysk~La~~kk~~e~~-~~~l~~~~~~~~----------~~~~l 146 (559)
T KOG1155|consen 81 IYLLAKSYFDCKEFERAAFFLQNCKSKKSAFLR---LYSKYLAGEKKSEEEM-AELLGRLESFSR----------INSEL 146 (559)
T ss_pred hhhhHhhhhhhHHHHHHHHHHHhcchHHHHHHH---HHHHHHhhhHHHHHHH-HHhhccchhhhh----------hhhHH
Confidence 467889999999999998888876652111111 1122333333221111 111111000000 01111
Q ss_pred HHHHHhHhh----CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 540 MDLNTATEL----DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 540 ~~~~~al~l----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
..+++-++. ...+...++..|.++.+.|....|+..+-.++...| ...+|..++.+... ++.......
T Consensus 147 ~~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~ 219 (559)
T KOG1155|consen 147 IELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVV 219 (559)
T ss_pred HHHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHh
Confidence 222222211 123466777788888888888888888888888777 66666665554321 111222221
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc-CCCChHHHHHHHHHHHHhcC
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN-DPGKSLLRFRQSLLLLRLNS 693 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~-~p~~~~~~~~~g~~~~~~g~ 693 (967)
.-|.+.... ....+..++..+.+.+++ +..+...+.. .|....+....|.+...+.+
T Consensus 220 ~l~~~~h~M----~~~F~~~a~~el~q~~e~------------------~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rD 277 (559)
T KOG1155|consen 220 GLPSDMHWM----KKFFLKKAYQELHQHEEA------------------LQKKERLSSVGFPNSMYIKTQIAAASYNQRD 277 (559)
T ss_pred cCcccchHH----HHHHHHHHHHHHHHHHHH------------------HHHHHHHHhccCCccHHHHHHHHHHHhhhhh
Confidence 222111111 113444445544444444 4444444443 45555555555555555555
Q ss_pred HHHHHHHHHHHHhcCCc----------------------------------hhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 694 QKAAMRSLRLARNYSTS----------------------------------EHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 694 ~~~A~~~l~~al~~~p~----------------------------------~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
+++|+..|+...+.+|- .++....+|+.|.-.++.++|+.+|++|+
T Consensus 278 fD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL 357 (559)
T KOG1155|consen 278 FDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRAL 357 (559)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHH
Confidence 55555555555555553 33444445666666677888888888888
Q ss_pred hcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH
Q 002100 740 SIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR 819 (967)
Q Consensus 740 ~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 819 (967)
+++|... .+|..+|.-|.++++...|++.|++|++++|.+
T Consensus 358 kLNp~~~----------------------------------------~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D 397 (559)
T KOG1155|consen 358 KLNPKYL----------------------------------------SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD 397 (559)
T ss_pred hcCcchh----------------------------------------HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh
Confidence 8888555 799999999999999999999999999999887
Q ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 002100 820 --AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLM 893 (967)
Q Consensus 820 --a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~ 893 (967)
+|++||..|..++...=|+-+|+++++.-|++...|..+|+. ++.++|+.+|.+|+........++..+|.+|.
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999963 99999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHhc-------CCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 002100 894 DDHKEAEAIAELSRAIAF-------KPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 894 ~~g~~~eAi~~~~kal~~-------~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
+.++.++|..+|++.++. .|+ ..+...+|..+.+.+++++|-.+..+++.-++.-.+...++..+...+.
T Consensus 478 ~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 999999999999999983 343 2356669999999999999999999999998887777777776666543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-20 Score=196.96 Aligned_cols=362 Identities=15% Similarity=0.102 Sum_probs=291.6
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCch--hHHHHHHHHHHhcCChHHHHHHHHHHHhccCc---------chh
Q 002100 456 KQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHI--YSLVGVARTKFKRGHKYSAYKLMNSLISDYTP---------VGW 524 (967)
Q Consensus 456 ~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~--~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~---------~g~ 524 (967)
+...+|..|.++.+.|....|+..|..++..-|. .++..|..+. .-++.+..++...+. .+.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~li-------t~~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELI-------TDIEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhh-------chHHHHHHHHhcCcccchHHHHHHHHH
Confidence 4677889999999999999999999999988773 3444444422 223333333332221 233
Q ss_pred HHHHHhhcCChHHHHHHHHHhHhh-CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCH
Q 002100 525 MYQERSLYCSGKEKMMDLNTATEL-DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDY 602 (967)
Q Consensus 525 ~~~~~~~y~~~~~A~~~~~~al~l-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~ 602 (967)
++++.. +.++++..+...+.. .|++...-...|.+.+.+.++++|+..|+.+.+.+| ..+-.-...++++-.++-
T Consensus 236 a~~el~---q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 236 AYQELH---QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHH---HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 455555 448999999988888 899999999999999999999999999999999999 666556666666666654
Q ss_pred HHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHH
Q 002100 603 DGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRF 682 (967)
Q Consensus 603 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~ 682 (967)
.+-.-.-+.+..++.--+..- -.+|+-|...++.++| +.+|+++++++|....+|.
T Consensus 313 skLs~LA~~v~~idKyR~ETC------CiIaNYYSlr~eHEKA------------------v~YFkRALkLNp~~~~aWT 368 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETC------CIIANYYSLRSEHEKA------------------VMYFKRALKLNPKYLSAWT 368 (559)
T ss_pred HHHHHHHHHHHHhccCCccce------eeehhHHHHHHhHHHH------------------HHHHHHHHhcCcchhHHHH
Confidence 443334445555554333333 4457777888888888 9999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCC
Q 002100 683 RQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNP 762 (967)
Q Consensus 683 ~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~ 762 (967)
.+|.-|..+++...|+.+|++|++++|.+..+|+.+|..|.-++.+.=|+-+|++|+...|++.
T Consensus 369 LmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs---------------- 432 (559)
T KOG1155|consen 369 LMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS---------------- 432 (559)
T ss_pred HhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999776
Q ss_pred CchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH--HHHHHHHHHHHHhCCHHHHHHH
Q 002100 763 ESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT--RAHQGLARVYHLKNQRKAAYDE 840 (967)
Q Consensus 763 ~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--~a~~~la~~~~~~g~~~~A~~~ 840 (967)
..|..||.+|.+.++.++|+.||.+|+..+.+ .++..||.+|.++++..+|...
T Consensus 433 ------------------------Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 433 ------------------------RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred ------------------------HHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 78999999999999999999999999998777 5999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 841 MTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 841 ~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
|.+.++.. ...-..+|.-..+...+|.-+.+.+++++|..+..+++..++.
T Consensus 489 yek~v~~~-----------------------~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 489 YEKYVEVS-----------------------ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred HHHHHHHH-----------------------HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 99888732 1122345555667777999999999999999999999887555
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-21 Score=200.83 Aligned_cols=455 Identities=13% Similarity=0.073 Sum_probs=335.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh--ccC-------cchhHHHHHhhcCChHHHHHHHHHhHhhCCCC-----chhH
Q 002100 491 SLVGVARTKFKRGHKYSAYKLMNSLIS--DYT-------PVGWMYQERSLYCSGKEKMMDLNTATELDPTL-----SYPY 556 (967)
Q Consensus 491 a~~~la~~~~~~g~~~~A~~~l~~~i~--~~~-------~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~-----~~~~ 556 (967)
.+..||.-|....-..+|+..|+-++. .++ +.|.+|++...| .+|++.|+.|+..-|.- ...+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~f---skaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREF---SKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhH---HHHHHHHHHHHhhccccchhhHHHHH
Confidence 344566655544455577777776665 333 457888888877 99999999999988753 4567
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCch---------HHhhh
Q 002100 557 KYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTL--DPSYM---------MFYGQ 625 (967)
Q Consensus 557 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~p~~~---------~~~~~ 625 (967)
.+.|..+.+.|+|+.|+..|+..++..|+..+-+++..+++..|+-++-.+.|.+.+.+ .|++. ...
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~-- 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN-- 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH--
Confidence 88899999999999999999999999999888889999999999999999999999976 12111 111
Q ss_pred hhhhhhHhhhHHHhhchhhHhhH-HHHHhhh--------ccccccchHHHHHHHHhc---CCCChHHHHHHHHHHHHhcC
Q 002100 626 LHGDNLVETLQPLVQQWSQADCW-MQLYDRW--------SSVDDIGSLAVVHHMLAN---DPGKSLLRFRQSLLLLRLNS 693 (967)
Q Consensus 626 ~~~~~~~~~l~~~~~~~~~A~~~-~~l~~~~--------~~~d~~~al~~~~~~l~~---~p~~~~~~~~~g~~~~~~g~ 693 (967)
+ ..-++-.-.+.+|++-..- .+-+... -..+-.....+.-..++. .|--..+-...+.-|++.|+
T Consensus 358 l---l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 358 L---LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred H---HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 0 1112222233333322000 0000000 000000000111111111 11112233466778889999
Q ss_pred HHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHc--CChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHH
Q 002100 694 QKAAMRSLRLARNYSTSEH-EKLVYEGWILYDT--GHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQ 770 (967)
Q Consensus 694 ~~~A~~~l~~al~~~p~~~-~a~~~lg~~~~~~--g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~ 770 (967)
++.|++.++-.-+.+.... .+-.++..+++.+ .++..|.++...++.++.-+++... .-++.....+..+++.+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~---nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALT---NKGNIAFANGDLDKAAE 511 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhh---cCCceeeecCcHHHHHH
Confidence 9999998876655544332 3445566666654 3678888999999988875552211 22233345567788888
Q ss_pred HHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002100 771 LLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKA 848 (967)
Q Consensus 771 ~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 848 (967)
.+.+++.. ...-.++++++|..+..+|++++|+++|-+.-. .+...+++.+|.+|..+.+..+|++++.++..+-
T Consensus 512 ~ykeal~n---dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sli 588 (840)
T KOG2003|consen 512 FYKEALNN---DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI 588 (840)
T ss_pred HHHHHHcC---chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC
Confidence 88888764 334558999999999999999999999988655 6777899999999999999999999999999999
Q ss_pred cCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHH
Q 002100 849 RNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ-LLHLRAA 923 (967)
Q Consensus 849 p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~-~~~~~a~ 923 (967)
|+++.++..++.+ |+..+|..++-...+.-|.+.+....+|..|....-+++||.+|+++--+.|+-. -..+.+.
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmias 668 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIAS 668 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 9999999999954 8899999999999999999999999999999999999999999999999999954 4556799
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 002100 924 FHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 924 ~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~ 959 (967)
++.+.|+|++|...|+.....+|.+.+-+..+.|+-
T Consensus 669 c~rrsgnyqka~d~yk~~hrkfpedldclkflvri~ 704 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIA 704 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHh
Confidence 999999999999999999999999999888887764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=221.08 Aligned_cols=297 Identities=19% Similarity=0.155 Sum_probs=211.8
Q ss_pred HHHHHHHHH--hcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhH
Q 002100 556 YKYRAILLV--EENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLV 632 (967)
Q Consensus 556 ~~~la~~~~--~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 632 (967)
+..+|..|. .+-+..+|+..|.+.-...+ ...++..+|..|+.+.+|++|.+.|+.+-.++|--..... ..-
T Consensus 320 lr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~me-----iyS 394 (638)
T KOG1126|consen 320 LRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGME-----IYS 394 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchh-----HHH
Confidence 445555554 45567899999999555556 5688999999999999999999999999998886433320 000
Q ss_pred hhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchh
Q 002100 633 ETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEH 712 (967)
Q Consensus 633 ~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~ 712 (967)
..++.....+ ++.++ .+..+..+|+.|
T Consensus 395 T~LWHLq~~v--------------------~Ls~L---------------------------------aq~Li~~~~~sP 421 (638)
T KOG1126|consen 395 TTLWHLQDEV--------------------ALSYL---------------------------------AQDLIDTDPNSP 421 (638)
T ss_pred HHHHHHHhhH--------------------HHHHH---------------------------------HHHHHhhCCCCc
Confidence 1111111000 11111 123345556666
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHh
Q 002100 713 EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNL 792 (967)
Q Consensus 713 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~l 792 (967)
+.|..+|+++..+++++.|++.|++|+.++|.+. .+|..+
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa----------------------------------------YayTLl 461 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA----------------------------------------YAYTLL 461 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc----------------------------------------hhhhhc
Confidence 6666666666666666666666666666666555 566666
Q ss_pred HHHHHhcccHHHHHHHHHHHhccCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHH
Q 002100 793 GSVYVDCEKLDLAADCYMNALNIKHT--RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDM 866 (967)
Q Consensus 793 g~~~~~~g~~~~A~~~~~~Al~~~~~--~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~ 866 (967)
|.-+....++|.|..+|++|+..++. ++|+++|.+|.++++++.|.-.|++|++++|.+.......|. .++.++
T Consensus 462 GhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 462 GHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDK 541 (638)
T ss_pred CChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhH
Confidence 66666666666666666666664433 366666666666666666666666666666666665555552 266677
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 867 AKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 867 A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
|+..|++|+.++|.++...+.+|.+++..+++++|+..+++.-++-|+. .+++.+|.+|.++|+.+.|+..|--|++++
T Consensus 542 AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 542 ALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 7777788888888999999999999999999999999999999999995 489999999999999999999999999999
Q ss_pred CCchh
Q 002100 946 PNHTD 950 (967)
Q Consensus 946 P~~~~ 950 (967)
|.-.+
T Consensus 622 pkg~~ 626 (638)
T KOG1126|consen 622 PKGAQ 626 (638)
T ss_pred Cccch
Confidence 98665
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=215.49 Aligned_cols=295 Identities=15% Similarity=0.102 Sum_probs=176.7
Q ss_pred HHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHH
Q 002100 525 MYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYD 603 (967)
Q Consensus 525 ~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~ 603 (967)
.|.....| +..+|+..|.+.-...++-.+.+..+|..|+++.+|++|.+.|+.+-...| ..+.......++..+.+--
T Consensus 326 ~~~~~s~y-~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v 404 (638)
T KOG1126|consen 326 GYRSLSQY-NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV 404 (638)
T ss_pred HHHHHHHH-HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH
Confidence 33344444 457888888885566677778888888888888888888888888888888 4433333344444444433
Q ss_pred HHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHH
Q 002100 604 GALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFR 683 (967)
Q Consensus 604 ~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~ 683 (967)
+--...+.+++.+|+.+..| -.+|.++...++++.| +..|+++++++|....+|..
T Consensus 405 ~Ls~Laq~Li~~~~~sPesW------ca~GNcfSLQkdh~~A------------------ik~f~RAiQldp~faYayTL 460 (638)
T KOG1126|consen 405 ALSYLAQDLIDTDPNSPESW------CALGNCFSLQKDHDTA------------------IKCFKRAIQLDPRFAYAYTL 460 (638)
T ss_pred HHHHHHHHHHhhCCCCcHHH------HHhcchhhhhhHHHHH------------------HHHHHHhhccCCccchhhhh
Confidence 33333444555566666665 4445555555555555 55555666666655555555
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCC
Q 002100 684 QSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPE 763 (967)
Q Consensus 684 ~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~ 763 (967)
+|.-+....+++.|+.+|+.|+..+|.+..+|+.+|.+|.++++++.|+-.|++|++++|.+.
T Consensus 461 lGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns----------------- 523 (638)
T KOG1126|consen 461 LGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS----------------- 523 (638)
T ss_pred cCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch-----------------
Confidence 555555556666666666666666666556666666666666666666666666665555443
Q ss_pred chHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhCCHHHHHHHH
Q 002100 764 SSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKNQRKAAYDEM 841 (967)
Q Consensus 764 ~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~~~~ 841 (967)
....-+|.++.+.|+.++|+..|++|+.+++.+ ..+..|.+++..+++++|+..+
T Consensus 524 -----------------------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~L 580 (638)
T KOG1126|consen 524 -----------------------VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQEL 580 (638)
T ss_pred -----------------------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHH
Confidence 344445555555555555555555555544443 4444555555555555555555
Q ss_pred HHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 842 TKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 842 ~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
+++-+ +-|+...++..+|.+|.+.|+.+.|+..|.=|..++|.
T Consensus 581 EeLk~------------------------------~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 581 EELKE------------------------------LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHH------------------------------hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 44444 44455555666666666666666666666666666666
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-19 Score=185.28 Aligned_cols=288 Identities=16% Similarity=0.092 Sum_probs=210.6
Q ss_pred HhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch-HHHH
Q 002100 671 LANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF-EAFF 749 (967)
Q Consensus 671 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~ 749 (967)
...-|.+..+...+|.++...|++.+|+-.|+++.-++|...+..-..|.++...|+++.-.......+.++... +.+|
T Consensus 225 ~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wf 304 (564)
T KOG1174|consen 225 NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWF 304 (564)
T ss_pred hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhh
Confidence 334444444444455555555555555555555555555544444444544544555444444444444333211 1111
Q ss_pred HHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHH
Q 002100 750 LKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARV 827 (967)
Q Consensus 750 ~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~ 827 (967)
...-. ..+..+..+++.+.++.++ .+++..+++...|.++...++.++|+-.|+.|..+.|.+ .|.+|-.+
T Consensus 305 V~~~~----l~~~K~~~rAL~~~eK~I~---~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 305 VHAQL----LYDEKKFERALNFVEKCID---SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS 377 (564)
T ss_pred hhhhh----hhhhhhHHHHHHHHHHHhc---cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 11100 1111222233333332222 223344788999999999999999999999999977654 89999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc-c-----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHH
Q 002100 828 YHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE-Y-----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEA 901 (967)
Q Consensus 828 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-~-----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA 901 (967)
|...|.+.+|...-+.++...|+++..+-..|. . .-.++|...+++++.++|....+...+|.+....|+++++
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchH
Confidence 999999999999999999999999999988872 2 4568999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhhhc
Q 002100 902 IAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNEQ 965 (967)
Q Consensus 902 i~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~~~ 965 (967)
++.+++++...|+...+..+|.+....+.+++|+..|..||.++|++...++-+.++++..+++
T Consensus 458 i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~~ 521 (564)
T KOG1174|consen 458 IKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDES 521 (564)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCCC
Confidence 9999999999999888999999999999999999999999999999999999999999987643
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-20 Score=212.41 Aligned_cols=301 Identities=14% Similarity=0.011 Sum_probs=174.5
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhh
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNL 631 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 631 (967)
....+.+|..+...|++++|+..|+++++.+| +..++..+|.++...|++++|+..+++++...+......
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~-------- 106 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQR-------- 106 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHH--------
Confidence 34456678888889999999999999999999 788899999999999999999999888876432211100
Q ss_pred HhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002100 632 VETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE 711 (967)
Q Consensus 632 ~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~ 711 (967)
...+..+|.+|...|++++|+..|+++++.+|.+
T Consensus 107 ----------------------------------------------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~ 140 (389)
T PRK11788 107 ----------------------------------------------LLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA 140 (389)
T ss_pred ----------------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch
Confidence 0122333444444444444444444444444444
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHH
Q 002100 712 HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNN 791 (967)
Q Consensus 712 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~ 791 (967)
..++..++.++...|++++|++.++++++..|..... .....+..
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~ 185 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-----------------------------------EIAHFYCE 185 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-----------------------------------HHHHHHHH
Confidence 4444444444444455555554444444444432200 00122334
Q ss_pred hHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCH-HHHHHHHc----cCCh
Q 002100 792 LGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNA-SAYEKRSE----YCDR 864 (967)
Q Consensus 792 lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~----~~~~ 864 (967)
+|.++...|++++|+..|+++++.. ...++..+|.++...|++++|++.++++++..|.+. .++..++. .+++
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 4444444455555555555444422 222444445555555555555555555554444331 22222221 1455
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH---cCChHHHHHHHHHH
Q 002100 865 DMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDS---MGDHLHTQRDCEAA 941 (967)
Q Consensus 865 ~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~---~g~~~~A~~~~~~a 941 (967)
++|+..++++++.+|+.. .+..++.++.+.|++++|+..++++++..|+...+..+...+.. .|+..+|+..+++.
T Consensus 266 ~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 266 AEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 555555555555566543 34778999999999999999999999999986644433333332 45788888777766
Q ss_pred Hh
Q 002100 942 LC 943 (967)
Q Consensus 942 l~ 943 (967)
++
T Consensus 345 ~~ 346 (389)
T PRK11788 345 VG 346 (389)
T ss_pred HH
Confidence 53
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-19 Score=194.74 Aligned_cols=441 Identities=15% Similarity=0.050 Sum_probs=303.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhCc-hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHH--hhcCChHH
Q 002100 461 HQLGVVMLEREEYKDAQNWFKAAVEAGH-IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQER--SLYCSGKE 537 (967)
Q Consensus 461 ~~lG~~~~~~g~y~~A~~~f~~al~~~~-~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~--~~y~~~~~ 537 (967)
+.+|.+++-.++|+.|......-.-.+. ....+..+.++.+..++..|..++...-... .+..+... +.+.+.+.
T Consensus 53 ~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~--~~f~yy~~~~~~~l~~n~ 130 (611)
T KOG1173|consen 53 YWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVET--NPFSYYEKDAANTLELNS 130 (611)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhh--cchhhcchhhhceeccCc
Confidence 4567777777777777666554422222 3334444566666666666666665331100 00011000 00000011
Q ss_pred HHHHHHHhHhhCCC--CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHh--------cCHH---
Q 002100 538 KMMDLNTATELDPT--LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIAL--------EDYD--- 603 (967)
Q Consensus 538 A~~~~~~al~l~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~--------g~~~--- 603 (967)
+. +..+. .....+.+|.+|....+.++|...|.+|+..++ ..++...+-....-. ...+
T Consensus 131 ~~-------~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~ 203 (611)
T KOG1173|consen 131 AG-------EDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAM 203 (611)
T ss_pred cc-------ccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHh
Confidence 11 11111 134567889999999999999999999998888 555544442222111 1100
Q ss_pred ---HHHHHHHHHHHhC-CCchH--Hhhhhh------hhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHH
Q 002100 604 ---GALRDVRALLTLD-PSYMM--FYGQLH------GDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHML 671 (967)
Q Consensus 604 ---~A~~~~~~al~l~-p~~~~--~~~~~~------~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l 671 (967)
+=.+..+...++. +.+.. ...+.. ...+..++.. +|| ..| ...+-...+......+
T Consensus 204 ~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~------~ad---~~y---~~c~f~~c~kit~~ll 271 (611)
T KOG1173|consen 204 LTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAE------KAD---RLY---YGCRFKECLKITEELL 271 (611)
T ss_pred hhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHH------HHH---HHH---HcChHHHHHHHhHHHH
Confidence 1111112222211 11000 000000 0000011110 111 000 0111122377788899
Q ss_pred hcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Q 002100 672 ANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLK 751 (967)
Q Consensus 672 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 751 (967)
+.+|-++..+-..-.++..+|+..+=...=-+.++..|+.+-.|+..|..|+..|++.+|.++|.++..++|.+.
T Consensus 272 e~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg----- 346 (611)
T KOG1173|consen 272 EKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG----- 346 (611)
T ss_pred hhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc-----
Confidence 999977665544333888889888877777888999999999999999999999999999999999999999777
Q ss_pred HHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHH
Q 002100 752 AYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYH 829 (967)
Q Consensus 752 ~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~ 829 (967)
.+|...|..+...++-++|+.+|..|-+ ++..-..+.+|.-|.
T Consensus 347 -----------------------------------paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 347 -----------------------------------PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYM 391 (611)
T ss_pred -----------------------------------HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 8999999999999999999999999998 444447778999999
Q ss_pred HhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhcc----CCC---CchHHHHHHHHHHhCCCH
Q 002100 830 LKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQL----DPM---RTYPYRYRAAVLMDDHKE 898 (967)
Q Consensus 830 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l----~p~---~~~~~~~la~~~~~~g~~ 898 (967)
..++.+-|.+.|.+++.+.|+++.++...|. ++.+.+|...|+.+++. .+. -...+.++|.++.+.+++
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 9999999999999999999999999999994 38999999999999843 222 234588999999999999
Q ss_pred HHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 899 AEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 899 ~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
++||.+|++++.+.|.+ .++-.+|.+|..+|+++.|+..|.++|.++|++.-+.++++.+-+..
T Consensus 472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~ 536 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDS 536 (611)
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Confidence 99999999999999995 58889999999999999999999999999999999999888876653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-19 Score=215.13 Aligned_cols=397 Identities=14% Similarity=-0.019 Sum_probs=310.3
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
+++.|+..|+++++.+|+++.+...++.++...|++++|+..+++++.-.| ....+..+|.+|..+|++++|++.|+++
T Consensus 49 d~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ka 128 (822)
T PRK14574 49 DTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSS 128 (822)
T ss_pred CHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 338999999999999999975555888889999999999999999993333 4555566688999999999999999999
Q ss_pred HHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc
Q 002100 613 LTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLN 692 (967)
Q Consensus 613 l~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g 692 (967)
++.+|+++.++ ..++.++...++.++| +..+.+++..+|.+... ..++.++...+
T Consensus 129 L~~dP~n~~~l------~gLa~~y~~~~q~~eA------------------l~~l~~l~~~dp~~~~~-l~layL~~~~~ 183 (822)
T PRK14574 129 LKKDPTNPDLI------SGMIMTQADAGRGGVV------------------LKQATELAERDPTVQNY-MTLSYLNRATD 183 (822)
T ss_pred HhhCCCCHHHH------HHHHHHHhhcCCHHHH------------------HHHHHHhcccCcchHHH-HHHHHHHHhcc
Confidence 99999998888 4557888888888888 99999999999985554 55666666678
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH------Hhh--hcCCCCC-
Q 002100 693 SQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY------ALA--DSSLNPE- 763 (967)
Q Consensus 693 ~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~------~la--~~~~~~~- 763 (967)
+..+|+..++++++.+|++.+.+..+..++...|-...|++..++--..........+... ..+ ......+
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 8877999999999999999999999999999999999999887764332221111111111 111 1111111
Q ss_pred --chHHHHHHHHHHhcCCCCCC----chHHHHHHhHHHHHhcccHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhCCH
Q 002100 764 --SSAYVIQLLEEALRCPSDGL----RKGQALNNLGSVYVDCEKLDLAADCYMNALNIK---HTRAHQGLARVYHLKNQR 834 (967)
Q Consensus 764 --~~~~a~~~le~~~~~~~~~~----~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~---~~~a~~~la~~~~~~g~~ 834 (967)
..++++..++.++......| ....+..-.-.++...+++.++++.|+.....+ |.++....|..|..+++.
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 23556666677665433333 233344455566788999999999999988643 677999999999999999
Q ss_pred HHHHHHHHHHHHHccC------CH----HHHHHHHccCChHHHHHHHHHhhccCC---------------CCchHHHHHH
Q 002100 835 KAAYDEMTKLIEKARN------NA----SAYEKRSEYCDRDMAKSDLSMATQLDP---------------MRTYPYRYRA 889 (967)
Q Consensus 835 ~~A~~~~~~al~~~p~------~~----~~~~~~~~~~~~~~A~~~l~~al~l~p---------------~~~~~~~~la 889 (967)
++|...|++++...|. .. ..++..-+.+++++|...+++..+..| +...+...++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 9999999999886632 11 123334455999999999999887544 2335667789
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 002100 890 AVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELY 955 (967)
Q Consensus 890 ~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~ 955 (967)
.++...|++.+|++.+++.+...|.+ .....+|.++...|++.+|...++.++.++|++..+.-..
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 99999999999999999999999995 5888899999999999999999999999999987775433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-17 Score=181.69 Aligned_cols=477 Identities=13% Similarity=0.051 Sum_probs=260.0
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc--hhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002100 439 TVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH--IYSLVGVARTKFKRGHKYSAYKLMNSLI 516 (967)
Q Consensus 439 ~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i 516 (967)
+..+|.+..+|.+..-+-..|+..| .-|+.|...+++|.+.=| ...+..-+++...+|+.+...+++.+.+
T Consensus 395 arilL~rAveccp~s~dLwlAlarL-------etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl 467 (913)
T KOG0495|consen 395 ARILLERAVECCPQSMDLWLALARL-------ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGL 467 (913)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHH-------HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6778888888877665544444333 679999999999999855 4455566778888999988888888877
Q ss_pred hccCcchhHHHHHhhc-----CChHHH----HHHHHHhHhh---CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC
Q 002100 517 SDYTPVGWMYQERSLY-----CSGKEK----MMDLNTATEL---DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV 584 (967)
Q Consensus 517 ~~~~~~g~~~~~~~~y-----~~~~~A----~~~~~~al~l---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 584 (967)
......|.....-.-. ++...+ -+.....|.+ +.+.-..|..-+..+...+-++-|+..|..+++..|
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp 547 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP 547 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc
Confidence 7444333221111100 000000 0111111211 223334555556666666666666666666666666
Q ss_pred -ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccch
Q 002100 585 -SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGS 663 (967)
Q Consensus 585 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~a 663 (967)
....|...+.+--.-|..++-...+++++...|.....+ .+.+..+...++...|
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lw------lM~ake~w~agdv~~a------------------ 603 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILW------LMYAKEKWKAGDVPAA------------------ 603 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHH------HHHHHHHHhcCCcHHH------------------
Confidence 444444444444455555655666666666666555555 3334444444444444
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
...+.++++.+|++..+|+..-.+.....+++.|...|.++....|. ...|+.-+.....+++.++|++.++++++..|
T Consensus 604 r~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 604 RVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFP 682 (913)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 55566666666666666666666666666666666666666665554 34555555555666666666666666666666
Q ss_pred chHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HH
Q 002100 744 SFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AH 821 (967)
Q Consensus 744 ~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~ 821 (967)
++..+|+..- +...+.+..+.+...+..-.+. -|.....|..++.+-...|+.-.|...++++.-.+|.+ .|
T Consensus 683 ~f~Kl~lmlG---Qi~e~~~~ie~aR~aY~~G~k~---cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lw 756 (913)
T KOG0495|consen 683 DFHKLWLMLG---QIEEQMENIEMAREAYLQGTKK---CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLW 756 (913)
T ss_pred chHHHHHHHh---HHHHHHHHHHHHHHHHHhcccc---CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhH
Confidence 5551110000 0000000000000000000000 00111345555555555555555555555555544433 33
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK 897 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~ 897 (967)
...-++-.+.|+.+.|...+.++++..|+++..|...-.+ ++...+ .-|++....++..+...|..+....+
T Consensus 757 le~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks----~DALkkce~dphVllaia~lfw~e~k 832 (913)
T KOG0495|consen 757 LESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKS----IDALKKCEHDPHVLLAIAKLFWSEKK 832 (913)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHH----HHHHHhccCCchhHHHHHHHHHHHHH
Confidence 3333344445555555555555555555555554443322 222222 22333334556666777777777778
Q ss_pred HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 002100 898 EAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDK 957 (967)
Q Consensus 898 ~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r 957 (967)
+++|.+.|+++++.+|++ +++...-.++...|.-++-.+.+.+...-.|.|.+.+...++
T Consensus 833 ~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 833 IEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 888888888888888774 466666667777777777777777777777877776655443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-20 Score=210.33 Aligned_cols=272 Identities=18% Similarity=0.054 Sum_probs=239.3
Q ss_pred hhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 002100 630 NLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST 709 (967)
Q Consensus 630 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p 709 (967)
+..+..+...+++++| +..+.++++.+|.+..+++.+|.++...|++++|+..+++++...+
T Consensus 39 y~~g~~~~~~~~~~~A------------------~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 100 (389)
T PRK11788 39 YFKGLNFLLNEQPDKA------------------IDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD 100 (389)
T ss_pred HHHHHHHHhcCChHHH------------------HHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC
Confidence 4556777777888888 9999999999999999999999999999999999999999988543
Q ss_pred ch----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCch
Q 002100 710 SE----HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRK 785 (967)
Q Consensus 710 ~~----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~ 785 (967)
.. ...+..+|.++...|++++|+..|+++++.+|...
T Consensus 101 ~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~--------------------------------------- 141 (389)
T PRK11788 101 LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAE--------------------------------------- 141 (389)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchH---------------------------------------
Confidence 22 35678899999999999999999999998777444
Q ss_pred HHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHH
Q 002100 786 GQALNNLGSVYVDCEKLDLAADCYMNALNIKHT-------RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKR 858 (967)
Q Consensus 786 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~-------~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 858 (967)
.++..++.++...|++++|++.|+++++.++. ..+..+|.++..+|++++|+..|+++++..|++..++..+
T Consensus 142 -~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 220 (389)
T PRK11788 142 -GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILL 220 (389)
T ss_pred -HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHH
Confidence 68889999999999999999999999884432 1566799999999999999999999999999999998888
Q ss_pred Hcc----CChHHHHHHHHHhhccCCCC-chHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHH
Q 002100 859 SEY----CDRDMAKSDLSMATQLDPMR-TYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLH 933 (967)
Q Consensus 859 ~~~----~~~~~A~~~l~~al~l~p~~-~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~ 933 (967)
+.. |++++|+..|+++++.+|.+ ...+..++.+|...|++++|+..++++++..|+...+..++.++...|++++
T Consensus 221 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~ 300 (389)
T PRK11788 221 GDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEA 300 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHH
Confidence 843 99999999999999998876 4567889999999999999999999999999997777889999999999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHH
Q 002100 934 TQRDCEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 934 A~~~~~~al~~~P~~~~~l~l~~r~~ 959 (967)
|+..++++++.+|++.....++....
T Consensus 301 A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 301 AQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 99999999999999988776666543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-18 Score=176.85 Aligned_cols=316 Identities=16% Similarity=0.159 Sum_probs=252.4
Q ss_pred hchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhh
Q 002100 452 ESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSL 531 (967)
Q Consensus 452 ~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~ 531 (967)
.++....-++.+|..++.+|++..|+..|..|++.+|.......-+ +.+|...++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrR-------------------------aT~yLAmGk 87 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRR-------------------------ATVYLAMGK 87 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHH-------------------------HHHHhhhcC
Confidence 3556677889999999999999999999999999999654443222 455555553
Q ss_pred cCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C---hhHHHHHH------------HH
Q 002100 532 YCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S---PDCLELRA------------WI 595 (967)
Q Consensus 532 y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~la------------~~ 595 (967)
- ..|+.++.+++++.|+...+...+|.+++++|.+++|...|++++..+| + .+++..++ ..
T Consensus 88 s---k~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s 164 (504)
T KOG0624|consen 88 S---KAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKS 164 (504)
T ss_pred C---ccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHH
Confidence 3 8899999999999999999999999999999999999999999999998 2 33443333 33
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCC
Q 002100 596 SIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDP 675 (967)
Q Consensus 596 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p 675 (967)
+...||+..|+.....+|++.|=+...+ ..++.+|...+....| |..+..+-++..
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~~Wda~l~------~~Rakc~i~~~e~k~A------------------I~Dlk~askLs~ 220 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQPWDASLR------QARAKCYIAEGEPKKA------------------IHDLKQASKLSQ 220 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcCcchhHHH------HHHHHHHHhcCcHHHH------------------HHHHHHHHhccc
Confidence 4556899999999999999999988888 7778888888777777 899999999999
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHH------------HHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 676 GKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVY------------EGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 676 ~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~------------lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
++...+|..+.+++..|+.+.++...+..++++|++-..+-. -+......++|.+++...++.++.+|
T Consensus 221 DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 221 DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999986543211 12233455667777777777776666
Q ss_pred chHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HH
Q 002100 744 SFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AH 821 (967)
Q Consensus 744 ~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~ 821 (967)
.-. +.....+..+..++...+++.+|+....+++..++.+ ++
T Consensus 301 ~~~------------------------------------~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l 344 (504)
T KOG0624|consen 301 EET------------------------------------MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVL 344 (504)
T ss_pred ccc------------------------------------ceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHH
Confidence 321 1222345566788888999999999999999866654 88
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHH
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAY 855 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 855 (967)
...|.+|.....|+.|+..|+++.+.++++..+-
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 8899999999999999999999999988765443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.3e-19 Score=189.28 Aligned_cols=380 Identities=16% Similarity=0.140 Sum_probs=273.7
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALED 601 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~ 601 (967)
|+..+..+.| +.|+..|.+||.++|.|...|-++..+|..+|+|++|++.-.+.++++| =+..|..+|..+.-+|+
T Consensus 9 gnaa~s~~d~---~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDF---ETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccH---HHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 4455555544 9999999999999999999999999999999999999999999999999 58899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhh--ccccccchHHHHHHHHhcCCCChH
Q 002100 602 YDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRW--SSVDDIGSLAVVHHMLANDPGKSL 679 (967)
Q Consensus 602 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~--~~~d~~~al~~~~~~l~~~p~~~~ 679 (967)
|++|+..|.+.|+.+|++......+...+ ...+...+.+....-|+.+-..- ...-...+.....+.+..+|.+..
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~--~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAY--LEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhh--hHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999999999999999998884432111 11111122222232222221000 000001123333344444444333
Q ss_pred HHHHHHHHHHHh----cCHHHHHHHHHHHH---hcCC---------------------chhHHHHHHHHHHHHcCChHHH
Q 002100 680 LRFRQSLLLLRL----NSQKAAMRSLRLAR---NYST---------------------SEHEKLVYEGWILYDTGHREEA 731 (967)
Q Consensus 680 ~~~~~g~~~~~~----g~~~~A~~~l~~al---~~~p---------------------~~~~a~~~lg~~~~~~g~~~eA 731 (967)
.+..--.+.... +.-.-+...-.... ...| .-+.....+|...+...+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 222110000000 00000000000000 0011 0123456789999999999999
Q ss_pred HHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHH
Q 002100 732 LAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMN 811 (967)
Q Consensus 732 ~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 811 (967)
++.|..+++++ ... ..+++.+.+|+..|++.+.+....+
T Consensus 244 ~q~y~~a~el~-~~i----------------------------------------t~~~n~aA~~~e~~~~~~c~~~c~~ 282 (539)
T KOG0548|consen 244 IQHYAKALELA-TDI----------------------------------------TYLNNIAAVYLERGKYAECIELCEK 282 (539)
T ss_pred HHHHHHHHhHh-hhh----------------------------------------HHHHHHHHHHHhccHHHHhhcchHH
Confidence 99999999888 443 4678889999999999999999999
Q ss_pred HhccCcHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCc
Q 002100 812 ALNIKHTR---------AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRT 882 (967)
Q Consensus 812 Al~~~~~~---------a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~ 882 (967)
+++.+... +...+|..|.+.++++.|+.+|.+++....+ ++....+ ...++++...+...-++|.-.
T Consensus 283 a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-~~~ls~l---k~~Ek~~k~~e~~a~~~pe~A 358 (539)
T KOG0548|consen 283 AVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-PDLLSKL---KEAEKALKEAERKAYINPEKA 358 (539)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-HHHHHHH---HHHHHHHHHHHHHHhhChhHH
Confidence 98854331 4445777999999999999999999887765 3332222 456788888888888899988
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHH
Q 002100 883 YPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTL 952 (967)
Q Consensus 883 ~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l 952 (967)
..-...|..+++.|+|.+|+..|.++|..+|++. .|-+||.+|.++|++..|+++++++++++|+.....
T Consensus 359 ~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 359 EEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHH
Confidence 8888899999999999999999999999999965 899999999999999999999999999999976653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-16 Score=170.93 Aligned_cols=446 Identities=16% Similarity=0.067 Sum_probs=244.2
Q ss_pred HHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhH---HHHHhhcCChHHHHHHHHHhHhhCCCCch
Q 002100 478 NWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWM---YQERSLYCSGKEKMMDLNTATELDPTLSY 554 (967)
Q Consensus 478 ~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~---~~~~~~y~~~~~A~~~~~~al~l~P~~~~ 554 (967)
..+++||+.-|.....+-+.+ ...+.+.|..++.++++..+..-.+ +..+..| +.|...++++-+.-|++..
T Consensus 367 RVlRKALe~iP~sv~LWKaAV--elE~~~darilL~rAveccp~s~dLwlAlarLetY---enAkkvLNkaRe~iptd~~ 441 (913)
T KOG0495|consen 367 RVLRKALEHIPRSVRLWKAAV--ELEEPEDARILLERAVECCPQSMDLWLALARLETY---ENAKKVLNKAREIIPTDRE 441 (913)
T ss_pred HHHHHHHHhCCchHHHHHHHH--hccChHHHHHHHHHHHHhccchHHHHHHHHHHHHH---HHHHHHHHHHHhhCCCChh
Confidence 344555555444443332222 2223333555555555544433222 2223334 6666666666666666666
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHhcc---CC---Chh-------------------------------------HHHH
Q 002100 555 PYKYRAILLVEENKLAAAITEINRIIGF---KV---SPD-------------------------------------CLEL 591 (967)
Q Consensus 555 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~p---~~~-------------------------------------~~~~ 591 (967)
.|..-+.+-...|+.+.-.+.+.+.+.. +. +-+ .+..
T Consensus 442 IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~ 521 (913)
T KOG0495|consen 442 IWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLD 521 (913)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhh
Confidence 6666666666666655555555544321 11 223 3444
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHH
Q 002100 592 RAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHML 671 (967)
Q Consensus 592 la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l 671 (967)
-+..+.+.+-++-|...|..+|+.+|.....|.+. ..+-...+..+. -...+++++
T Consensus 522 da~~~~k~~~~~carAVya~alqvfp~k~slWlra------~~~ek~hgt~Es------------------l~Allqkav 577 (913)
T KOG0495|consen 522 DAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRA------AMFEKSHGTRES------------------LEALLQKAV 577 (913)
T ss_pred hHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHH------HHHHHhcCcHHH------------------HHHHHHHHH
Confidence 44555555555555555555555555555555221 111111111111 144555666
Q ss_pred hcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Q 002100 672 ANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLK 751 (967)
Q Consensus 672 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 751 (967)
..-|....+|...+..+...|+..+|...+..+++.+|++-+.|+.--.+.....+++.|...+.++....|.-..++ +
T Consensus 578 ~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~m-K 656 (913)
T KOG0495|consen 578 EQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWM-K 656 (913)
T ss_pred HhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhH-H
Confidence 666666666666666666666666666666666666666666666555666666666666666666665555333111 1
Q ss_pred HHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHH
Q 002100 752 AYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYH 829 (967)
Q Consensus 752 ~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~ 829 (967)
...+- .-.+..+.++.++++.++..++-+ ..|..+|.++.++++.+.|.+.|..-++ ++....|..|+++-.
T Consensus 657 s~~~e---r~ld~~eeA~rllEe~lk~fp~f~---Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 657 SANLE---RYLDNVEEALRLLEEALKSFPDFH---KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred HhHHH---HHhhhHHHHHHHHHHHHHhCCchH---HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 11100 011334555555555555444333 4555566666666666666666666555 333345666666666
Q ss_pred HhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHH
Q 002100 830 LKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAEL 905 (967)
Q Consensus 830 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~ 905 (967)
+.|+...|...++++.-.+|+++..|...-. .|+.++|.....+|++-.|.+...|..--...-+-++-..++..+
T Consensus 731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH
Confidence 6666666666666666666666555554431 256666666666666666665555554444444444444444443
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 906 SRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 906 ~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
.+. .-++.++...|.+++...++++|...|++++.++|++.+++..+=+.+-+.
T Consensus 811 kkc---e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~h 864 (913)
T KOG0495|consen 811 KKC---EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRH 864 (913)
T ss_pred Hhc---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHh
Confidence 333 223456777899999999999999999999999999999988776655443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-18 Score=194.30 Aligned_cols=361 Identities=15% Similarity=0.055 Sum_probs=210.0
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhh
Q 002100 557 KYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETL 635 (967)
Q Consensus 557 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l 635 (967)
+..|..++..|++++|++.+..+|+.+| ++.+|+.+|.+|.++|+.++|...+-.|-.++|++...| ..++..
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W------~~ladl 216 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELW------KRLADL 216 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHH------HHHHHH
Confidence 3444444555555555555555555555 555555555555555555555555555555555555555 334444
Q ss_pred HHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch----
Q 002100 636 QPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE---- 711 (967)
Q Consensus 636 ~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~---- 711 (967)
...++++++| .-.|.++++.+|.+....+.++.+|.+.|+...|+..|.+++...|..
T Consensus 217 s~~~~~i~qA------------------~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 217 SEQLGNINQA------------------RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred HHhcccHHHH------------------HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 4455555555 445555555555555555555555555555555555555555555511
Q ss_pred hHHH-HHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHh--------------
Q 002100 712 HEKL-VYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEAL-------------- 776 (967)
Q Consensus 712 ~~a~-~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~-------------- 776 (967)
.... ...+..+...++.+.|++.++.++....+-. -......++...+...+++.+...+-...
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~-~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEA-SLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccc-cccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 1111 1123334444444555555555444111000 00000011111111111112111111111
Q ss_pred -----------cCCCCCCchHHH-HHHhHHHHHhcccHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 002100 777 -----------RCPSDGLRKGQA-LNNLGSVYVDCEKLDLAADCYMNALN---IKHTRAHQGLARVYHLKNQRKAAYDEM 841 (967)
Q Consensus 777 -----------~~~~~~~~~~~a-~~~lg~~~~~~g~~~~A~~~~~~Al~---~~~~~a~~~la~~~~~~g~~~~A~~~~ 841 (967)
....+......+ ...++.+.....+..+++..+..--. .+..+.+..++.++...|++.+|+.+|
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLL 437 (895)
T ss_pred hhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 111111222233 55667777777777777777654433 334458999999999999999999999
Q ss_pred HHHHHHcc-CCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--
Q 002100 842 TKLIEKAR-NNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-- 914 (967)
Q Consensus 842 ~~al~~~p-~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-- 914 (967)
..++...+ +++.+|..+|. .+.+++|+..|++++.++|++.++...++.++.++|+.++|.+.+++.+.-++.
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~ 517 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNA 517 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccch
Confidence 99998776 46778888884 399999999999999999999999999999999999999999999987633311
Q ss_pred --------hHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 915 --------LQLLHLRAAFHDSMGDHLHTQRDCEAAL 942 (967)
Q Consensus 915 --------~~~~~~~a~~~~~~g~~~~A~~~~~~al 942 (967)
-.+...+..++.+.|+.++=+..-...+
T Consensus 518 e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 518 EACAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred hhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1267789999999999998554444333
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-18 Score=181.94 Aligned_cols=411 Identities=15% Similarity=0.074 Sum_probs=304.4
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhCc-------hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHh
Q 002100 458 LAFHQLGVVMLEREEYKDAQNWFKAAVEAGH-------IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERS 530 (967)
Q Consensus 458 ~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~ 530 (967)
..-.++|.++++..+|.+|+++|+-|+..-| ......++-.+.+.|++..|+..|...++..|+.-..+...-
T Consensus 238 ~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i 317 (840)
T KOG2003|consen 238 ILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLII 317 (840)
T ss_pred eeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhh
Confidence 3445689999999999999999999998755 122233344556788999999999999887776554443322
Q ss_pred -hc--CChHHHHHHHHHhHhhC--CC---------Cc-hhHHHHHHHH-----HhcCcHHHHHHHHHHHhcc-CC----C
Q 002100 531 -LY--CSGKEKMMDLNTATELD--PT---------LS-YPYKYRAILL-----VEENKLAAAITEINRIIGF-KV----S 585 (967)
Q Consensus 531 -~y--~~~~~A~~~~~~al~l~--P~---------~~-~~~~~la~~~-----~~~g~~~~A~~~~~~al~~-~p----~ 585 (967)
.| ++.++-.+.|.+.|.+- |+ ++ ..+.+-+.-- ++..+-..|.+.+..+.++ .| +
T Consensus 318 ~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~ 397 (840)
T KOG2003|consen 318 CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD 397 (840)
T ss_pred hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc
Confidence 11 26677788888887651 11 11 1222222211 1222222233333222221 12 1
Q ss_pred ---------------------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhh
Q 002100 586 ---------------------PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQ 644 (967)
Q Consensus 586 ---------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~ 644 (967)
.+.-...+--+++.|+++.|++.++-.-+.+.....+. ..++..++...|--+-
T Consensus 398 fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saa-----a~nl~~l~flqggk~~ 472 (840)
T KOG2003|consen 398 FAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAA-----ANNLCALRFLQGGKDF 472 (840)
T ss_pred hhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHH-----hhhhHHHHHHhcccch
Confidence 12234456678889999999987765544443333222 1344444444332222
Q ss_pred HhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 002100 645 ADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYD 724 (967)
Q Consensus 645 A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~ 724 (967)
++ |..+...++..+..++.+..+.|.+.+..|++++|...|+.++..+.+..++++++|..+..
T Consensus 473 ~~----------------aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~ 536 (840)
T KOG2003|consen 473 AD----------------AQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEA 536 (840)
T ss_pred hH----------------HHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHH
Confidence 21 36677788999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHH
Q 002100 725 TGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDL 804 (967)
Q Consensus 725 ~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~ 804 (967)
+|+.++|+.+|-+.-.+-.++. +.++.++.+|..+.+..+
T Consensus 537 ~~~ldeald~f~klh~il~nn~----------------------------------------evl~qianiye~led~aq 576 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAILLNNA----------------------------------------EVLVQIANIYELLEDPAQ 576 (840)
T ss_pred hcCHHHHHHHHHHHHHHHHhhH----------------------------------------HHHHHHHHHHHHhhCHHH
Confidence 9999999999988664444333 789999999999999999
Q ss_pred HHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccC
Q 002100 805 AADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLD 878 (967)
Q Consensus 805 A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~ 878 (967)
|+++|.++.. ++.+.++..||.+|-+.|+..+|..++-......|.+.+....++.| .-.++|+.+|++|.-+.
T Consensus 577 aie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 577 AIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 9999999988 55666899999999999999999999999999999999988888854 55689999999999999
Q ss_pred CCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcC
Q 002100 879 PMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMG 929 (967)
Q Consensus 879 p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g 929 (967)
|+...-....|.++.+.|+|++|...|...-...|+ .+.+..+-++.-.+|
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 998887788899999999999999999999988888 456666666665555
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-18 Score=187.18 Aligned_cols=365 Identities=16% Similarity=0.075 Sum_probs=232.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCcchhHHHHHhhcCChH
Q 002100 458 LAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISD-YTPVGWMYQERSLYCSGK 536 (967)
Q Consensus 458 ~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~-~~~~g~~~~~~~~y~~~~ 536 (967)
...+..|.+|....+.++|..+|.+|+..+..........+-...=-..+-..++..+--. ... -..-.....| ...
T Consensus 142 sic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~-ed~e~l~~ly-el~ 219 (611)
T KOG1173|consen 142 SICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTK-EDVERLEILY-ELK 219 (611)
T ss_pred ceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhh-hHHHHHHHHH-Hhh
Confidence 3466789999999999999999999999876332222222111111111111111110000 000 0000000000 000
Q ss_pred HHHHHHHHhHhhC--------CCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHH
Q 002100 537 EKMMDLNTATELD--------PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALR 607 (967)
Q Consensus 537 ~A~~~~~~al~l~--------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~ 607 (967)
.....=+..+..+ .++......++..++...+|.+..+..+..++.+| ++.++-..-.++..+|+..+=..
T Consensus 220 ~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~ 299 (611)
T KOG1173|consen 220 LCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFL 299 (611)
T ss_pred hhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHH
Confidence 0000000000111 23556677777788888888888888888888888 66665555457777777777666
Q ss_pred HHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHH
Q 002100 608 DVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLL 687 (967)
Q Consensus 608 ~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~ 687 (967)
.-.+..+..|+.+..| +..|.-|..++++++| -..|.++..++|..+.+|...|..
T Consensus 300 lsh~LV~~yP~~a~sW------~aVg~YYl~i~k~seA------------------Rry~SKat~lD~~fgpaWl~fghs 355 (611)
T KOG1173|consen 300 LSHKLVDLYPSKALSW------FAVGCYYLMIGKYSEA------------------RRYFSKATTLDPTFGPAWLAFGHS 355 (611)
T ss_pred HHHHHHHhCCCCCcch------hhHHHHHHHhcCcHHH------------------HHHHHHHhhcCccccHHHHHHhHH
Confidence 6677777788877777 6667777777888777 677788888888888888888888
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHH
Q 002100 688 LLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAY 767 (967)
Q Consensus 688 ~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~ 767 (967)
+...++.++|+.+|..|-++-|.......++|.-|..+++++-|.+.|.+|+.+.|+++
T Consensus 356 fa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp--------------------- 414 (611)
T KOG1173|consen 356 FAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDP--------------------- 414 (611)
T ss_pred hhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcc---------------------
Confidence 88888888888888888888888777777888888888888888888888888887665
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHhCCHHHHH
Q 002100 768 VIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI----KH-----TRAHQGLARVYHLKNQRKAAY 838 (967)
Q Consensus 768 a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~----~~-----~~a~~~la~~~~~~g~~~~A~ 838 (967)
-.++.+|.+.+..+.|.+|+.+|++++.. .+ ...+.+||.++.+++.+++|+
T Consensus 415 -------------------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 415 -------------------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred -------------------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 56777788888888888888888877741 11 115777777777777777777
Q ss_pred HHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHH
Q 002100 839 DEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYR 888 (967)
Q Consensus 839 ~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~l 888 (967)
..|++++.+.|.++..+...|. .|+++.|++.|.+++.++|++..+-..+
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 7777777766666555555552 2555555555555555555554443333
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-16 Score=177.42 Aligned_cols=431 Identities=15% Similarity=0.087 Sum_probs=242.2
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHh--CchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcC
Q 002100 456 KQLAFHQLGVVMLEREEYKDAQNWFKAAVEA--GHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYC 533 (967)
Q Consensus 456 ~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~ 533 (967)
.+..|-.+.......|+|+.+.+.|++++.. +....+..++..+..-|....|..+++.....-+
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~------------- 388 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE------------- 388 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc-------------
Confidence 4556667777788889999999999999887 3455566666666666655555555555444330
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHH-HHHhcCcHHHHHHHHHHHhccCC------ChhHHHHHHHHHHHh-------
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAI-LLVEENKLAAAITEINRIIGFKV------SPDCLELRAWISIAL------- 599 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~la~~~~~~------- 599 (967)
.|.++..+..-+. +..+.+.+++++.+..+++.... .+.++..+|.+|..+
T Consensus 389 ---------------~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~ 453 (799)
T KOG4162|consen 389 ---------------QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLK 453 (799)
T ss_pred ---------------CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCCh
Confidence 0333333333322 22333445555555555544211 233444444444322
Q ss_pred ----cCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCC
Q 002100 600 ----EDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDP 675 (967)
Q Consensus 600 ----g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p 675 (967)
-...++++.++++++.+|+|+.+. +.++.-|...++.+.| +....++++.++
T Consensus 454 seR~~~h~kslqale~av~~d~~dp~~i------f~lalq~A~~R~l~sA------------------l~~~~eaL~l~~ 509 (799)
T KOG4162|consen 454 SERDALHKKSLQALEEAVQFDPTDPLVI------FYLALQYAEQRQLTSA------------------LDYAREALALNR 509 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchHH------HHHHHHHHHHHhHHHH------------------HHHHHHHHHhcC
Confidence 112344555555555555555444 4444444444444444 444555555532
Q ss_pred -CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 676 -GKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 676 -~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
..+..|..++.++...+++.+|+.....+++..|+|.........+-...++.++|+..+...+.+.. ..|.
T Consensus 510 ~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we-------~~~~ 582 (799)
T KOG4162|consen 510 GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWE-------AEYG 582 (799)
T ss_pred CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHH-------hhhh
Confidence 23344455555555555555555555555555555544444444444445555555555544442221 0000
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHh-HHHH--HhcccHHHHHHHHHHHhccCc-----HHHHHHHHH
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNL-GSVY--VDCEKLDLAADCYMNALNIKH-----TRAHQGLAR 826 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~l-g~~~--~~~g~~~~A~~~~~~Al~~~~-----~~a~~~la~ 826 (967)
.-... +.+.. ..+-..+.-...+..........+ +.+. ...-..+..+..+...-.+++ ...|...|.
T Consensus 583 ~q~~~-~~g~~---~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~ 658 (799)
T KOG4162|consen 583 VQQTL-DEGKL---LRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAAD 658 (799)
T ss_pred Hhhhh-hhhhh---hhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHH
Confidence 00000 00000 000000000000000000001111 0100 000000111000000000111 126777888
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHH
Q 002100 827 VYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAI 902 (967)
Q Consensus 827 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi 902 (967)
++.+.++.++|...+.++-...|..++.|+.+|.. ++.++|...|..|+.+||+++.....+|.++.+.|+..-|.
T Consensus 659 ~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~ 738 (799)
T KOG4162|consen 659 LFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAE 738 (799)
T ss_pred HHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHH
Confidence 88888888999888999989999999999998843 88899999999999999999999999999999999888888
Q ss_pred H--HHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 002100 903 A--ELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 903 ~--~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~ 949 (967)
+ .+..+++++|. +++|+.+|.++.++|+.++|...|..|+++.+.+|
T Consensus 739 ~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 739 KRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 8 89999999999 56999999999999999999999999999988776
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-16 Score=181.86 Aligned_cols=465 Identities=14% Similarity=0.058 Sum_probs=297.7
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc--hhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002100 439 TVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH--IYSLVGVARTKFKRGHKYSAYKLMNSLI 516 (967)
Q Consensus 439 ~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i 516 (967)
....+..+.+....++.-+.++-.||.+|..--|...|..+|++|.++++ ..+..+.+..|....+++.|....-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 55667778888888999999999999999999999999999999999987 4566778889999999998888754443
Q ss_pred h---------ccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-Ch
Q 002100 517 S---------DYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SP 586 (967)
Q Consensus 517 ~---------~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~ 586 (967)
+ .++..|..|.+.. +...|+.+|+.|+..+|++...|..+|.+|.+.|+|..|++.|+++..++| +.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~---n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAH---NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred hhchHHHHHhhhhhccccccCcc---chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 3 2233444444444 559999999999999999999999999999999999999999999999999 88
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhh-hHhhhHHHhhchhhHhhHHHHHhhhccccccchHH
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDN-LVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLA 665 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~-~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~ 665 (967)
...+..|.+....|+|.+|+..+...+............+...+ ..+..+...+=+.+|..+.+ .+++
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~e-----------ksie 699 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFE-----------KSIE 699 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHH-----------HHHH
Confidence 89999999999999999999999998876554433321111000 01111111111111110000 0011
Q ss_pred HHHHHHh----------------------cCCCC-----------------------------------------hHHHH
Q 002100 666 VVHHMLA----------------------NDPGK-----------------------------------------SLLRF 682 (967)
Q Consensus 666 ~~~~~l~----------------------~~p~~-----------------------------------------~~~~~ 682 (967)
.+.-++. ..|+. +..|+
T Consensus 700 ~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~Wy 779 (1238)
T KOG1127|consen 700 SFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWY 779 (1238)
T ss_pred HHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHH
Confidence 1110000 01111 22333
Q ss_pred HHHHHHHH--------hcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 683 RQSLLLLR--------LNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 683 ~~g~~~~~--------~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
++|.-|++ +.+-..|+.++++++++..++...|..+|.+ ...|++.-|...|-+++...|
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep----------- 847 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP----------- 847 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-----------
Confidence 44433333 1122244444444444444444444444444 233444444444444444444
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhC
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKN 832 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g 832 (967)
...-.|.|+|.++.+..+++.|...|.++..++|.+ .|.+.|.+....|
T Consensus 848 -----------------------------~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG 898 (1238)
T KOG1127|consen 848 -----------------------------TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVG 898 (1238)
T ss_pred -----------------------------cchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHH
Confidence 334688999999999999999999999988887776 6777777778888
Q ss_pred CHHHHHHHHHHHHHHccCCH---HHHHHHH--c----c----------CChHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 002100 833 QRKAAYDEMTKLIEKARNNA---SAYEKRS--E----Y----------CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLM 893 (967)
Q Consensus 833 ~~~~A~~~~~~al~~~p~~~---~~~~~~~--~----~----------~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~ 893 (967)
+.-++...+....+..-... ...+... + . ++...|--.+++-+.-.|+...++...|..+.
T Consensus 899 ~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlE 978 (1238)
T KOG1127|consen 899 RIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLE 978 (1238)
T ss_pred HHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHH
Confidence 88888887776333322111 1111110 0 0 23333444455556667777777777777777
Q ss_pred hCCCHHHHHHHHHHHHhcC-------CChHHHHHHHHHH-------------------------------HHcCChHHHH
Q 002100 894 DDHKEAEAIAELSRAIAFK-------PDLQLLHLRAAFH-------------------------------DSMGDHLHTQ 935 (967)
Q Consensus 894 ~~g~~~eAi~~~~kal~~~-------p~~~~~~~~a~~~-------------------------------~~~g~~~~A~ 935 (967)
..+.+.+|.+...+++.+- ..+.+--..|+++ +-.+++++++
T Consensus 979 hL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~lFfkndf~~sl 1058 (1238)
T KOG1127|consen 979 HLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTLFFKNDFFSSL 1058 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHHHHHhHHHHHH
Confidence 7777777777777665321 0011111222222 4456777778
Q ss_pred HHHHHHHhcCCCchhHHHHHHHH
Q 002100 936 RDCEAALCLDPNHTDTLELYDKA 958 (967)
Q Consensus 936 ~~~~~al~~~P~~~~~l~l~~r~ 958 (967)
..|++|+.+.-.+.+...++.++
T Consensus 1059 ~~fe~aLsis~se~d~vvLl~kv 1081 (1238)
T KOG1127|consen 1059 EFFEQALSISNSESDKVVLLCKV 1081 (1238)
T ss_pred HHHHHHhhhcccccchhhhhHHH
Confidence 88888888877777655555544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-17 Score=185.86 Aligned_cols=296 Identities=15% Similarity=0.033 Sum_probs=210.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVET 634 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 634 (967)
....|.+.+..|+++.|.+.+.++.+..| ....+...|.++..+|+++.|...+.++.+..|++....
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~----------- 155 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILV----------- 155 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHH-----------
Confidence 36677777888888888888888877777 455666667888888888888888877777666644211
Q ss_pred hHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHH
Q 002100 635 LQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEK 714 (967)
Q Consensus 635 l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a 714 (967)
....+.++...|++++|...++...+..|+++.+
T Consensus 156 ----------------------------------------------~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~ 189 (409)
T TIGR00540 156 ----------------------------------------------EIARTRILLAQNELHAARHGVDKLLEMAPRHKEV 189 (409)
T ss_pred ----------------------------------------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 1223455566666777777777777777777777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHH
Q 002100 715 LVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGS 794 (967)
Q Consensus 715 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~ 794 (967)
+..++.++...|++++|++.+++..+........+. ........
T Consensus 190 l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~------------------------------------~l~~~a~~ 233 (409)
T TIGR00540 190 LKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFA------------------------------------DLEQKAEI 233 (409)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH------------------------------------HHHHHHHH
Confidence 777777777777777777777766654321110000 00001111
Q ss_pred HHHhcccHHHHHHHHHHHhcc------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHH----HHHHHHcc--C
Q 002100 795 VYVDCEKLDLAADCYMNALNI------KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNAS----AYEKRSEY--C 862 (967)
Q Consensus 795 ~~~~~g~~~~A~~~~~~Al~~------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~--~ 862 (967)
-+...+..+++.+.+.++.+. +.+..+..+|..+...|++++|++.++++++..|++.. .+...... +
T Consensus 234 ~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~ 313 (409)
T TIGR00540 234 GLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPE 313 (409)
T ss_pred HHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCC
Confidence 112223333344455555542 23457888888888888888888888888888888764 33333322 6
Q ss_pred ChHHHHHHHHHhhccCCCCc--hHHHHHHHHHHhCCCHHHHHHHHH--HHHhcCCChHHHHHHHHHHHHcCChHHHHHHH
Q 002100 863 DRDMAKSDLSMATQLDPMRT--YPYRYRAAVLMDDHKEAEAIAELS--RAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDC 938 (967)
Q Consensus 863 ~~~~A~~~l~~al~l~p~~~--~~~~~la~~~~~~g~~~eAi~~~~--kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~ 938 (967)
+.+.++..++++++.+|+++ ..+..+|+++++.|++++|.++|+ ++++..|++..+..+|.++.++|+.++|.+.|
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 78889999999999999999 889999999999999999999999 68889999887779999999999999999999
Q ss_pred HHHHhc
Q 002100 939 EAALCL 944 (967)
Q Consensus 939 ~~al~~ 944 (967)
++++..
T Consensus 394 ~~~l~~ 399 (409)
T TIGR00540 394 QDSLGL 399 (409)
T ss_pred HHHHHH
Confidence 998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-17 Score=185.38 Aligned_cols=335 Identities=17% Similarity=0.079 Sum_probs=270.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHH
Q 002100 586 PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLA 665 (967)
Q Consensus 586 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~ 665 (967)
...+...|+..+..|++++|.+.+..++.++|.+..+| +.++.+|.+.|+.+++ +.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay------~tL~~IyEqrGd~eK~------------------l~ 194 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAY------YTLGEIYEQRGDIEKA------------------LN 194 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhH------HHHHHHHHHcccHHHH------------------HH
Confidence 44677778899999999999999999999999999999 8999999999999998 88
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccc-
Q 002100 666 VVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRS- 744 (967)
Q Consensus 666 ~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~- 744 (967)
..-.+--++|.+...|..++....++|.+++|+-+|.+|++.+|.+.+..+..+.+|.++|+...|...|.+++.+.|.
T Consensus 195 ~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 195 FWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV 274 (895)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch
Confidence 8888889999999999999999999999999999999999999999999999999999999999999999999999992
Q ss_pred -hHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc----cCcH-
Q 002100 745 -FEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN----IKHT- 818 (967)
Q Consensus 745 -~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----~~~~- 818 (967)
........+..+...........+++.++.+.....+ .....-++.++.+++...+++.|......-.. .++.
T Consensus 275 d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~-~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e 353 (895)
T KOG2076|consen 275 DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD-EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE 353 (895)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc-cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh
Confidence 1211122223344444444557888888888873332 23334567888999999999999887765433 1100
Q ss_pred -------------------------HH-HHHHHHHHHHhCCHHHHHHHHHHHHHHcc-CCHHHHHHHHc----cCChHHH
Q 002100 819 -------------------------RA-HQGLARVYHLKNQRKAAYDEMTKLIEKAR-NNASAYEKRSE----YCDRDMA 867 (967)
Q Consensus 819 -------------------------~a-~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~----~~~~~~A 867 (967)
.+ +..++.++.+..+..+++..+..--...| +.++.|...+. .+++.+|
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~A 433 (895)
T KOG2076|consen 354 WDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEA 433 (895)
T ss_pred hhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 13 55555566666666666655543333224 35566666663 3999999
Q ss_pred HHHHHHhhccCCC-CchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 868 KSDLSMATQLDPM-RTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 868 ~~~l~~al~l~p~-~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
+..|..++...+. +...|+.+|.+|+..|.+++|+..|++++...|+ .++...++.++.++|+.++|++.++....-|
T Consensus 434 l~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 434 LRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 9999999987764 4678999999999999999999999999999999 5699999999999999999999999987444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-18 Score=179.08 Aligned_cols=308 Identities=16% Similarity=0.175 Sum_probs=211.0
Q ss_pred chhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc
Q 002100 522 VGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE 600 (967)
Q Consensus 522 ~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g 600 (967)
.|..+.....| .+|+..|..||++.|+++..|.+++..++..++|++|....++.+.++| .+..+...+.++..++
T Consensus 55 ~gn~~yk~k~Y---~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 55 EGNAFYKQKTY---GNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred hcchHHHHhhH---HHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence 35666677777 9999999999999999999999999999999999999999999999999 7889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcC---CCC
Q 002100 601 DYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAND---PGK 677 (967)
Q Consensus 601 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~---p~~ 677 (967)
+..+|.+.++ +..++ ... . ++..+++.+..+ |.-
T Consensus 132 ~~i~A~~~~~--------~~~~~----------~~a-------n------------------al~~~~~~~~s~s~~pac 168 (486)
T KOG0550|consen 132 DLIEAEEKLK--------SKQAY----------KAA-------N------------------ALPTLEKLAPSHSREPAC 168 (486)
T ss_pred HHHHHHHHhh--------hhhhh----------HHh-------h------------------hhhhhhcccccccCCchh
Confidence 9999988877 11111 000 1 133333333332 444
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhh
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALAD 757 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~ 757 (967)
..+....+.++.-.+++.+|...--..+++++.+.++++..|.+++..++.+.|+..|++++.++|+...
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~---------- 238 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQK---------- 238 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhh----------
Confidence 4566678999999999999999999999999999999999999999999999999999999999996540
Q ss_pred cCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHH
Q 002100 758 SSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAA 837 (967)
Q Consensus 758 ~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A 837 (967)
+..+- ..+.....+...|.-.+.. |++..|
T Consensus 239 -------sk~~~-----------~~~k~le~~k~~gN~~fk~--------------------------------G~y~~A 268 (486)
T KOG0550|consen 239 -------SKSAS-----------MMPKKLEVKKERGNDAFKN--------------------------------GNYRKA 268 (486)
T ss_pred -------HHhHh-----------hhHHHHHHHHhhhhhHhhc--------------------------------cchhHH
Confidence 00000 0111123344444444444 444444
Q ss_pred HHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hH
Q 002100 838 YDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQ 916 (967)
Q Consensus 838 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~ 916 (967)
.+.|+.+|.++|++. ..++..|.++|.+..+.|+..+|+...+.+++++|. ..
T Consensus 269 ~E~Yteal~idP~n~--------------------------~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 269 YECYTEALNIDPSNK--------------------------KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred HHHHHHhhcCCcccc--------------------------chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 445444554444321 123344555666666666666666666666666665 34
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 917 LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 917 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
++..+|.++..+++|++|.++|++|++...+ .+....+.+++...
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aL 367 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLAL 367 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHH
Confidence 6666666666666666666666666655544 34444444444333
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.6e-16 Score=188.38 Aligned_cols=407 Identities=10% Similarity=-0.020 Sum_probs=203.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhC--c-hhHHHHHHHHHHhcCChHHHHHHHHHHHh----ccCcchhHHHHHhhcCC
Q 002100 462 QLGVVMLEREEYKDAQNWFKAAVEAG--H-IYSLVGVARTKFKRGHKYSAYKLMNSLIS----DYTPVGWMYQERSLYCS 534 (967)
Q Consensus 462 ~lG~~~~~~g~y~~A~~~f~~al~~~--~-~~a~~~la~~~~~~g~~~~A~~~l~~~i~----~~~~~g~~~~~~~~y~~ 534 (967)
.+-..+...++++.|...+....+.+ | ......+..+|.+.|+.+.|.++|++..+ .|......|...+ +
T Consensus 128 ~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g---~ 204 (697)
T PLN03081 128 ALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG---N 204 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCc---C
Confidence 33344444555555555555555442 1 33333444555555555555555554433 1111122222222 2
Q ss_pred hHHHHHHHHHhHhhCCC-CchhHHHHHHHHHhcCcHHHHHHHHHHHhccC--CChhHHHHHHHHHHHhcCHHHHHHHHHH
Q 002100 535 GKEKMMDLNTATELDPT-LSYPYKYRAILLVEENKLAAAITEINRIIGFK--VSPDCLELRAWISIALEDYDGALRDVRA 611 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~ 611 (967)
.++|+..|++..+..+. +...+..+-..+...|+.+.+.+.+..+++.. |+...+..+...|.+.|++++|.+.|++
T Consensus 205 ~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHh
Confidence 25555555555443221 22333344444444555555555544444332 2444455555555555555555555543
Q ss_pred HHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcC-CCChHHHHHHHHHHHH
Q 002100 612 LLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAND-PGKSLLRFRQSLLLLR 690 (967)
Q Consensus 612 al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~-p~~~~~~~~~g~~~~~ 690 (967)
.. +.+...| ..+...|...+++++| +..|.++.+.. .-+...+..+...+.+
T Consensus 285 m~---~~~~vt~------n~li~~y~~~g~~~eA------------------~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 285 MP---EKTTVAW------NSMLAGYALHGYSEEA------------------LCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred CC---CCChhHH------HHHHHHHHhCCCHHHH------------------HHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 31 2223333 2233344444445444 44444444322 1123344444455555
Q ss_pred hcCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHH
Q 002100 691 LNSQKAAMRSLRLARNYS-TSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVI 769 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~ 769 (967)
.|++++|...+...++.. +.+...+..+...|.+.|+.++|.+.|++..+ |
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-------------------------- 389 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-------------------------- 389 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C--------------------------
Confidence 555555555555555443 23344445555555555555555555554432 1
Q ss_pred HHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc--cCcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002100 770 QLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN--IKHTR-AHQGLARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 770 ~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~~~~~-a~~~la~~~~~~g~~~~A~~~~~~al~ 846 (967)
+...|+.+...|...|+.++|++.|++..+ ..|.. .+..+...+...|..++|.+.|+...+
T Consensus 390 ---------------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 390 ---------------NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred ---------------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 113566666666666666666666666655 22222 555566666666666666666666655
Q ss_pred HccC--CHHHHHHH----HccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHH
Q 002100 847 KARN--NASAYEKR----SEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLH 919 (967)
Q Consensus 847 ~~p~--~~~~~~~~----~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~ 919 (967)
..+- +...|..+ +..|+.++|.+.+++. ...| +...|..+...+...|+++.|...+++.++..|+ ...|.
T Consensus 455 ~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 3221 11222222 2336666666666543 2233 2345666666666677777777777777776666 33566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh
Q 002100 920 LRAAFHDSMGDHLHTQRDCEAALC 943 (967)
Q Consensus 920 ~~a~~~~~~g~~~~A~~~~~~al~ 943 (967)
.+..+|.+.|++++|.+.++...+
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 666677777777777777666543
|
|
| >KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=184.99 Aligned_cols=180 Identities=16% Similarity=0.205 Sum_probs=154.3
Q ss_pred ccccccccCCCCcccEEEEEcC-----eEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc
Q 002100 243 SMEDEECSTSDEDWDMSFCIGN-----DEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR 317 (967)
Q Consensus 243 ~~~~~~~~~~~~~~Dv~~~v~~-----~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y 317 (967)
........+++..+||+|+|++ +.|||||.|||..|.+|.+||+|++.|+...+|.+++ +.|.+|..+|+|||
T Consensus 102 ~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpd--vepaaFl~~L~flY 179 (521)
T KOG2075|consen 102 RERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPD--VEPAAFLAFLRFLY 179 (521)
T ss_pred HHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCC--cChhHhHHHHHHHh
Confidence 3444456688999999999974 6899999999999999999999999999888999987 99999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhhcCCchh
Q 002100 318 TKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNPN 397 (967)
Q Consensus 318 t~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~l~~~~ 397 (967)
++.+ .+..++++.+|.+|++|.++.|.+.|.++|...+..+..++.+...|..++-++|...|++.|..++...+..+.
T Consensus 180 sdev-~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EG 258 (521)
T KOG2075|consen 180 SDEV-KLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEG 258 (521)
T ss_pred cchh-hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccc
Confidence 9999 899999999999999999999999999999999983444555666699999999999999999999996555444
Q ss_pred ----------HhhhhccchHHHHHHhhcchHHHHHHHHHHhccC
Q 002100 398 ----------VMRIFCSAEARERLAMVGHASFVLYYFLSQIGME 431 (967)
Q Consensus 398 ----------~~~ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~ 431 (967)
+++++.++.++ + .+..++.+++.|...+
T Consensus 259 f~did~~~dt~~evl~r~~l~-----~-~e~~lfeA~lkw~~~e 296 (521)
T KOG2075|consen 259 FCDIDSTRDTYEEVLRRDTLE-----A-REFRLFEAALKWAEAE 296 (521)
T ss_pred eeehhhHHHHHHHHHhhcccc-----h-hHHHHHHHHHhhccCc
Confidence 44555555555 3 4678899999999754
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-17 Score=194.02 Aligned_cols=245 Identities=16% Similarity=0.060 Sum_probs=208.9
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhc---------CcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEE---------NKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGA 605 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A 605 (967)
++|+..|++|++++|+++.+|..+|.++... +++++|+..++++++++| ++.++..+|.++...|++++|
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 8999999999999999999999999887643 448999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHH
Q 002100 606 LRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQS 685 (967)
Q Consensus 606 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g 685 (967)
+..|+++++++|++..++ +.++.++...|++++| +..++++++++|.++..+..++
T Consensus 358 ~~~~~~Al~l~P~~~~a~------~~lg~~l~~~G~~~eA------------------i~~~~~Al~l~P~~~~~~~~~~ 413 (553)
T PRK12370 358 SLLFKQANLLSPISADIK------YYYGWNLFMAGQLEEA------------------LQTINECLKLDPTRAAAGITKL 413 (553)
T ss_pred HHHHHHHHHhCCCCHHHH------HHHHHHHHHCCCHHHH------------------HHHHHHHHhcCCCChhhHHHHH
Confidence 999999999999999988 7789999999999999 9999999999999887777777
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCc
Q 002100 686 LLLLRLNSQKAAMRSLRLARNYS-TSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPES 764 (967)
Q Consensus 686 ~~~~~~g~~~~A~~~l~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~ 764 (967)
.+++..|++++|+..+++++... |+++.++..+|.++..+|++++|+..+.+.....|...
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~------------------ 475 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGL------------------ 475 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhH------------------
Confidence 77888999999999999998875 78888899999999999999999999999877777444
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhCCHHHHHHHHH
Q 002100 765 SAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKNQRKAAYDEMT 842 (967)
Q Consensus 765 ~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~~~~~ 842 (967)
.+.+.++.+|...|+ +|...+++.++..... ....++.+|.-.|+.+.+..+ +
T Consensus 476 ----------------------~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~ 530 (553)
T PRK12370 476 ----------------------IAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-N 530 (553)
T ss_pred ----------------------HHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-H
Confidence 567777888887774 7777777766622221 223378888888888888877 6
Q ss_pred HHHHH
Q 002100 843 KLIEK 847 (967)
Q Consensus 843 ~al~~ 847 (967)
++.+.
T Consensus 531 ~~~~~ 535 (553)
T PRK12370 531 KFKNE 535 (553)
T ss_pred Hhhcc
Confidence 66654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-15 Score=185.45 Aligned_cols=420 Identities=11% Similarity=-0.004 Sum_probs=261.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhCc----hhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCc-------chhHHH
Q 002100 460 FHQLGVVMLEREEYKDAQNWFKAAVEAGH----IYSLVGVARTKFKRGHKYSAYKLMNSLISD-YTP-------VGWMYQ 527 (967)
Q Consensus 460 ~~~lG~~~~~~g~y~~A~~~f~~al~~~~----~~a~~~la~~~~~~g~~~~A~~~l~~~i~~-~~~-------~g~~~~ 527 (967)
|..+-..+...|++++|++.|+.....++ ......+...+.+.++...+..++..++.. +.+ +..+|.
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh
Confidence 44455567788999999999998876532 344445556666667776666666655441 111 111122
Q ss_pred HHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC--ChhHHHHHHHHHHHhcCHHHH
Q 002100 528 ERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV--SPDCLELRAWISIALEDYDGA 605 (967)
Q Consensus 528 ~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A 605 (967)
+.+ +.++|...|++..+ | +...|..+...|.+.|++++|++.|++..+..+ +...+..+...+...|+.+.+
T Consensus 170 k~g---~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 170 KCG---MLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred cCC---CHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 222 33555555555432 2 334455555555555555555555555544332 344444444455555555555
Q ss_pred HHHHHHHHHhCC-CchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHH
Q 002100 606 LRDVRALLTLDP-SYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQ 684 (967)
Q Consensus 606 ~~~~~~al~l~p-~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~ 684 (967)
.+.+..+++..- .+...+ ..+...|...+++++| ...|+++. +.+...|..+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~------n~Li~~y~k~g~~~~A------------------~~vf~~m~---~~~~vt~n~l 296 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVS------CALIDMYSKCGDIEDA------------------RCVFDGMP---EKTTVAWNSM 296 (697)
T ss_pred HHHHHHHHHhCCCccceeH------HHHHHHHHHCCCHHHH------------------HHHHHhCC---CCChhHHHHH
Confidence 555444444321 111112 2223344444444444 34443332 2234455555
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCC
Q 002100 685 SLLLLRLNSQKAAMRSLRLARNY--STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNP 762 (967)
Q Consensus 685 g~~~~~~g~~~~A~~~l~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~ 762 (967)
...|.+.|++++|+..|++..+. .|+ ...+..+...+.+.|++++|.+.+...++...
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~------------------- 356 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF------------------- 356 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhCC-------------------
Confidence 55555555555555555555432 222 33455555555555555555555555543321
Q ss_pred CchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002100 763 ESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMT 842 (967)
Q Consensus 763 ~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 842 (967)
+.....++.+...|.+.|++++|...|++..+++ ..+|..+...|.+.|+.++|++.|+
T Consensus 357 --------------------~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d-~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 357 --------------------PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN-LISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred --------------------CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCC-eeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 1223578889999999999999999999887643 3488999999999999999999999
Q ss_pred HHHHHc--cCCHHHHHHHH----ccCChHHHHHHHHHhhccCC--CCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 843 KLIEKA--RNNASAYEKRS----EYCDRDMAKSDLSMATQLDP--MRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 843 ~al~~~--p~~~~~~~~~~----~~~~~~~A~~~l~~al~l~p--~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
+..+.. |+ ...|...- ..|..++|...|+...+..+ .+...|..+..+|.+.|++++|.+.+++. ...|+
T Consensus 416 ~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~ 493 (697)
T PLN03081 416 RMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT 493 (697)
T ss_pred HHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC
Confidence 988754 43 33333322 34999999999999876432 23456788999999999999999999875 46677
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 002100 915 LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELY 955 (967)
Q Consensus 915 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~ 955 (967)
...|..+...+...|+.+.|...+++.+++.|++.....++
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L 534 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL 534 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence 77888899999999999999999999999999876543333
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.3e-16 Score=173.49 Aligned_cols=428 Identities=16% Similarity=0.113 Sum_probs=275.4
Q ss_pred HHHhhcchHHHHHHHHHHhccCcccccchHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhC--
Q 002100 410 RLAMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAG-- 487 (967)
Q Consensus 410 r~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~-- 487 (967)
|+....++.++|..+.-.+. +...+..+.+.+.+..+........|+.++..|...|.-..|+...++.+...
T Consensus 315 r~~~~qnd~ai~d~Lt~al~-----~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALS-----RCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHhhhcchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 34444455555554433332 22334445555555555555667789999999999999999999999999886
Q ss_pred c--hhHHHHHHH-HHHhcCChHHHHHHHHHHHhcc------------CcchhHHHHHhhcC--------ChHHHHHHHHH
Q 002100 488 H--IYSLVGVAR-TKFKRGHKYSAYKLMNSLISDY------------TPVGWMYQERSLYC--------SGKEKMMDLNT 544 (967)
Q Consensus 488 ~--~~a~~~la~-~~~~~g~~~~A~~~l~~~i~~~------------~~~g~~~~~~~~y~--------~~~~A~~~~~~ 544 (967)
| .......++ +.-..+..++++++..++++.+ .-.|..|..+..-. ...++++.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 4 223333333 3445677778999999888822 22345554433111 35889999999
Q ss_pred hHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHH
Q 002100 545 ATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV--SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMF 622 (967)
Q Consensus 545 al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 622 (967)
|++.+|+|+.+.++++.-|..+++.+.|+....++++.++ ++.+|..+|.++...+++.+|+.....+++..|+|...
T Consensus 470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l 549 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL 549 (799)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999999988 89999999999999999999999999999999887655
Q ss_pred hhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCC---------hHHHHHHHHHHHHhcC
Q 002100 623 YGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGK---------SLLRFRQSLLLLRLNS 693 (967)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~---------~~~~~~~g~~~~~~g~ 693 (967)
. .....+....++-+++ +......+..-... .......+.+.....+
T Consensus 550 ~------~~~~~i~~~~~~~e~~------------------l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q 605 (799)
T KOG4162|consen 550 M------DGKIHIELTFNDREEA------------------LDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQ 605 (799)
T ss_pred c------hhhhhhhhhcccHHHH------------------HHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccc
Confidence 4 2223333334444444 33333333221110 1111111222222223
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH-hcccchHHHHHHHHHhhhcCCCCCchHHHHHHH
Q 002100 694 QKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI-SIQRSFEAFFLKAYALADSSLNPESSAYVIQLL 772 (967)
Q Consensus 694 ~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al-~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~l 772 (967)
..+|++..+++... ...-...-..+.. +.+.. .-.|+..-+.
T Consensus 606 ~~~a~s~sr~ls~l-----------~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~----------------------- 648 (799)
T KOG4162|consen 606 PTDAISTSRYLSSL-----------VASQLKSAGSELK---LPSSTVLPGPDSLWYL----------------------- 648 (799)
T ss_pred ccccchhhHHHHHH-----------HHhhhhhcccccc---cCcccccCCCCchHHH-----------------------
Confidence 33333332222110 0000000001111 11100 0111111000
Q ss_pred HHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002100 773 EEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 773 e~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
....|...+..+...++.++|..|+.+|-.+.+.. .++..|.++..+|++++|.+.|..++..+|+
T Consensus 649 ------------~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 649 ------------LQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred ------------HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 01455666677777777777777777777655543 6666777777777777777777777777777
Q ss_pred CHHHHHHHHcc----CChHHHHH--HHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 002100 851 NASAYEKRSEY----CDRDMAKS--DLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL 915 (967)
Q Consensus 851 ~~~~~~~~~~~----~~~~~A~~--~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~ 915 (967)
+......+|.. |+...|.. .+..++++||.++.+|+++|.++.+.|+.++|.++|..++++.+..
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 77666666632 55555555 8888999999999999999999999999999999999999988763
|
|
| >KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9e-19 Score=163.54 Aligned_cols=160 Identities=19% Similarity=0.312 Sum_probs=130.6
Q ss_pred ccccccccccccCCCCcccEEEEEc---CeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHh
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIG---NDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEF 315 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~---~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~ 315 (967)
.+.+......++..+.|||++|.++ ++.|+|||.|||+||++++ |.++-.| .+.+..++| +++++|..+++|
T Consensus 50 ~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~dD--ad~Ea~~t~iRW 124 (280)
T KOG4591|consen 50 ISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDLDD--ADFEAFHTAIRW 124 (280)
T ss_pred HHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhcccc--cCHHHHHHhhee
Confidence 3333333445566789999999998 7889999999999999876 3222222 234566666 999999999999
Q ss_pred HcCCCCC-CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhh----
Q 002100 316 SRTKMLD-SFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELP---- 390 (967)
Q Consensus 316 ~Yt~~~~-~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~---- 390 (967)
|||++++ ..+.+.+.+++.+|++|+++-|++.|++-+...+. ++||+.++++|++.++..|...|-..|..+|+
T Consensus 125 IYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~-V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~~ 203 (280)
T KOG4591|consen 125 IYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLH-VDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLGK 203 (280)
T ss_pred eeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-HhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccCh
Confidence 9999995 34566788999999999999999999999999999 99999999999999999999999999999998
Q ss_pred ---hcCCchhHhhhhcc
Q 002100 391 ---CSMQNPNVMRIFCS 404 (967)
Q Consensus 391 ---~~l~~~~~~~ll~s 404 (967)
.+++..-+-+++.+
T Consensus 204 a~FaqMs~aLLYklId~ 220 (280)
T KOG4591|consen 204 ADFAQMSAALLYKLIDG 220 (280)
T ss_pred HHHHhccHHHHHHHHcC
Confidence 34555555555555
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-15 Score=172.88 Aligned_cols=300 Identities=13% Similarity=0.017 Sum_probs=207.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHH-HHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELR-AWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVET 634 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 634 (967)
.+..|...+..|+|++|.+.+.+.-+..+++..++.+ +......|+++.|...+.++.+.+|++....
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~----------- 155 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPV----------- 155 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHH-----------
Confidence 5666777777777777776666655544444444444 4444777777777777777777666644332
Q ss_pred hHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHH
Q 002100 635 LQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEK 714 (967)
Q Consensus 635 l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a 714 (967)
....+.++...|++++|+..+++..+.+|+++.+
T Consensus 156 ----------------------------------------------~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~a 189 (398)
T PRK10747 156 ----------------------------------------------EITRVRIQLARNENHAARHGVDKLLEVAPRHPEV 189 (398)
T ss_pred ----------------------------------------------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence 1122455566667777777777777777777777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHH
Q 002100 715 LVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGS 794 (967)
Q Consensus 715 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~ 794 (967)
+..++.+|...|++++|+..+.+..+..+....... -+ ...++..+..
T Consensus 190 l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~--------------------~l------------~~~a~~~l~~ 237 (398)
T PRK10747 190 LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA--------------------ML------------EQQAWIGLMD 237 (398)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH--------------------HH------------HHHHHHHHHH
Confidence 777777777777777777666666654442210000 00 0012211111
Q ss_pred HHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc--CChHHHHHH
Q 002100 795 VYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY--CDRDMAKSD 870 (967)
Q Consensus 795 ~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~--~~~~~A~~~ 870 (967)
......+-+...+.++..-+ ++.+.++..+|..+...|+.++|.+.++++++..| +.......+.. ++.++++..
T Consensus 238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRLKTNNPEQLEKV 316 (398)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhccCCChHHHHHH
Confidence 11122222333333333222 44566888899999999999999999999998544 55555555543 889999999
Q ss_pred HHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 871 LSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 871 l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
.++.++.+|+++..+..+|.++...+++++|.++|+++++..|+...+..++.++.++|+.++|...|++++.+.
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999888899999999999999999999998764
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-16 Score=176.85 Aligned_cols=385 Identities=12% Similarity=0.029 Sum_probs=260.7
Q ss_pred hHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002100 535 GKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALL 613 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al 613 (967)
...|+..|-++++++|+.+.+|..+|.+|....+...|.+.|.+|.++|+ +.++....+..|....+++.|......+-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 46777777777777777777777777777777777777777777777777 77777777777777777777777765555
Q ss_pred HhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcC
Q 002100 614 TLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNS 693 (967)
Q Consensus 614 ~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~ 693 (967)
+..|.....+.. ..+|..|...++...+ +..++.++..+|.+...|..+|.+|.+.|.
T Consensus 554 qka~a~~~k~nW----~~rG~yyLea~n~h~a------------------V~~fQsALR~dPkD~n~W~gLGeAY~~sGr 611 (1238)
T KOG1127|consen 554 QKAPAFACKENW----VQRGPYYLEAHNLHGA------------------VCEFQSALRTDPKDYNLWLGLGEAYPESGR 611 (1238)
T ss_pred hhchHHHHHhhh----hhccccccCccchhhH------------------HHHHHHHhcCCchhHHHHHHHHHHHHhcCc
Confidence 555544333321 2355666666666665 777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHH--------HHHHHHhhhcCCCCCc-
Q 002100 694 QKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAF--------FLKAYALADSSLNPES- 764 (967)
Q Consensus 694 ~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~--------~~~~~~la~~~~~~~~- 764 (967)
+..|++.|.++..++|.+.-..+..+.+....|+|.+|+..+...+......... ...+...+-.++....
T Consensus 612 y~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kav 691 (1238)
T KOG1127|consen 612 YSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAV 691 (1238)
T ss_pred eehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 7777777777777777777777777777777777777777777666443311100 0000000001111100
Q ss_pred --hHHHHHHHHHHhcCC-CCC------------------CchHHHHHHhHHHH---Hhccc---H---HHHHHHHHHHhc
Q 002100 765 --SAYVIQLLEEALRCP-SDG------------------LRKGQALNNLGSVY---VDCEK---L---DLAADCYMNALN 814 (967)
Q Consensus 765 --~~~a~~~le~~~~~~-~~~------------------~~~~~a~~~lg~~~---~~~g~---~---~~A~~~~~~Al~ 814 (967)
.++.++.+.-.+... .+. +..... ..++... ...+. . --|.+++-..++
T Consensus 692 d~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~-h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls 770 (1238)
T KOG1127|consen 692 DFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNM-HYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS 770 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHH-HHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH
Confidence 011111111110000 000 111100 0111111 01111 1 245566666666
Q ss_pred -cCcHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHccCCHHHHHHHHcc---CChHHHHHHHHHhhccCCCCc
Q 002100 815 -IKHTRAHQGLARVYHL--------KNQRKAAYDEMTKLIEKARNNASAYEKRSEY---CDRDMAKSDLSMATQLDPMRT 882 (967)
Q Consensus 815 -~~~~~a~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~---~~~~~A~~~l~~al~l~p~~~ 882 (967)
..+...|++||..|+. +.+...|+..+.+++++..++...|+.+|.. +++.-|..+|-+.+.+.|...
T Consensus 771 l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~ 850 (1238)
T KOG1127|consen 771 LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCH 850 (1238)
T ss_pred HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccch
Confidence 4456689999998876 2344689999999999999999999999964 889999999999999999999
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 883 YPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAAL 942 (967)
Q Consensus 883 ~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al 942 (967)
-.|.++|.++.+..+++-|...|.++..++|.+ ..+...+.+....|+.-++...+...-
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~ 911 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSD 911 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999995 488888999999999999998888733
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-15 Score=155.62 Aligned_cols=277 Identities=13% Similarity=0.025 Sum_probs=137.1
Q ss_pred HHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHh
Q 002100 575 EINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYD 653 (967)
Q Consensus 575 ~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~ 653 (967)
.+-.-...-| +...+..+|.+++..|++++|+..|+++..++|.+.... -..+.+....+++++-
T Consensus 220 l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M------D~Ya~LL~~eg~~e~~-------- 285 (564)
T KOG1174|consen 220 LMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM------DLYAVLLGQEGGCEQD-------- 285 (564)
T ss_pred HHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH------HHHHHHHHhccCHhhH--------
Confidence 3333333344 455555555555555555555555555555555554444 2334444444444443
Q ss_pred hhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHH
Q 002100 654 RWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALA 733 (967)
Q Consensus 654 ~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~ 733 (967)
-......+..+......|+.-+..++..+++..|+..-+++++.+|.+.+++...|.++...|+.++|+-
T Consensus 286 ----------~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 286 ----------SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred ----------HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH
Confidence 1222223333333333444444444444555555555555555555555555555555555555555555
Q ss_pred HHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHh
Q 002100 734 KAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNAL 813 (967)
Q Consensus 734 ~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 813 (967)
.|..|..+.|... ..|..|-..|...|++.+|...-+.++
T Consensus 356 aFR~Aq~Lap~rL----------------------------------------~~Y~GL~hsYLA~~~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 356 AFRTAQMLAPYRL----------------------------------------EIYRGLFHSYLAQKRFKEANALANWTI 395 (564)
T ss_pred HHHHHHhcchhhH----------------------------------------HHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 5555554444222 334444444444444444444444444
Q ss_pred c--cCcHHHHHHHH-HHHHH-hCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHH
Q 002100 814 N--IKHTRAHQGLA-RVYHL-KNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPY 885 (967)
Q Consensus 814 ~--~~~~~a~~~la-~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~ 885 (967)
+ .+...++..+| .+++. ---.++|.+.+++++...|....+-...+++ |.+..++..+++++...|+ ...+
T Consensus 396 ~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH 474 (564)
T KOG1174|consen 396 RLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLH 474 (564)
T ss_pred HHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHH
Confidence 4 12222333332 22221 1123444444555555555444444444432 4444555555555554443 4456
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCChH
Q 002100 886 RYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ 916 (967)
Q Consensus 886 ~~la~~~~~~g~~~eAi~~~~kal~~~p~~~ 916 (967)
..+|.++...+.+++|+..|.+|+.++|+++
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 7788888888888888888888888888865
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-15 Score=185.96 Aligned_cols=439 Identities=11% Similarity=0.000 Sum_probs=176.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhC--c-hhHHHHHHHHHHhcCChHHHHHHHHHHHhc--------cCcchhHHH
Q 002100 459 AFHQLGVVMLEREEYKDAQNWFKAAVEAG--H-IYSLVGVARTKFKRGHKYSAYKLMNSLISD--------YTPVGWMYQ 527 (967)
Q Consensus 459 a~~~lG~~~~~~g~y~~A~~~f~~al~~~--~-~~a~~~la~~~~~~g~~~~A~~~l~~~i~~--------~~~~g~~~~ 527 (967)
.|..+-..|.+.|++++|+..|++..+.+ | ......+...+.+.|+...|.+++..++.. +..+..+|.
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~ 334 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 34444445555555555555555555442 2 222233333444455555555554444331 111112222
Q ss_pred HHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhc--cCCChhHHHHHHHHHHHhcCHHHH
Q 002100 528 ERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIG--FKVSPDCLELRAWISIALEDYDGA 605 (967)
Q Consensus 528 ~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~la~~~~~~g~~~~A 605 (967)
+.+ +.++|...|++.. ..+...|..+...|.+.|++++|++.|++... ..|+...+..+-..+...|++++|
T Consensus 335 k~g---~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a 408 (857)
T PLN03077 335 SLG---SWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG 408 (857)
T ss_pred hcC---CHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH
Confidence 222 2244444444432 12333444444445555555555555544322 223333333333344444555555
Q ss_pred HHHHHHHHHhCCCc-hHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHH
Q 002100 606 LRDVRALLTLDPSY-MMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQ 684 (967)
Q Consensus 606 ~~~~~~al~l~p~~-~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~ 684 (967)
.+.+..+++..... ...+ ..+-..|...+++++| ...|+++.+ .+...|..+
T Consensus 409 ~~l~~~~~~~g~~~~~~~~------n~Li~~y~k~g~~~~A------------------~~vf~~m~~---~d~vs~~~m 461 (857)
T PLN03077 409 VKLHELAERKGLISYVVVA------NALIEMYSKCKCIDKA------------------LEVFHNIPE---KDVISWTSI 461 (857)
T ss_pred HHHHHHHHHhCCCcchHHH------HHHHHHHHHcCCHHHH------------------HHHHHhCCC---CCeeeHHHH
Confidence 55544444432211 1111 1222333444444444 333333321 122334444
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCc
Q 002100 685 SLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPES 764 (967)
Q Consensus 685 g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~ 764 (967)
...|.+.|++++|+..|++.....+.+...+..+-..+...|+.+.+.+.+..+++..-....+... .+.+.+...++
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n--aLi~~y~k~G~ 539 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN--ALLDLYVRCGR 539 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech--HHHHHHHHcCC
Confidence 4444445555555555544443322223333333334444444444444444444322111000000 11111112223
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHH-HHHHHHHHHHHhCCHHHHHHHH
Q 002100 765 SAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTR-AHQGLARVYHLKNQRKAAYDEM 841 (967)
Q Consensus 765 ~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~-a~~~la~~~~~~g~~~~A~~~~ 841 (967)
.+.+...++.. ..+...|+.+...|...|+.++|++.|++..+. .|.. .+..+-..+...|+.++|.+.|
T Consensus 540 ~~~A~~~f~~~-------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 540 MNYAWNQFNSH-------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred HHHHHHHHHhc-------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHH
Confidence 33333333332 122234444444555555555555555544431 1111 3333334444455555555555
Q ss_pred HHHHHHccC--CHHHHHHHH----ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 002100 842 TKLIEKARN--NASAYEKRS----EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL 915 (967)
Q Consensus 842 ~~al~~~p~--~~~~~~~~~----~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~ 915 (967)
+...+..+- +...|..+. ..|+.++|...+++. ...|+ +..|..+-..+...++.+.|....++++++.|+.
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~ 690 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNS 690 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Confidence 544432211 122222222 124455555444442 22332 3333333334444445555544455555555542
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 916 -QLLHLRAAFHDSMGDHLHTQRDCEAA 941 (967)
Q Consensus 916 -~~~~~~a~~~~~~g~~~~A~~~~~~a 941 (967)
..|..++.+|...|+|++|.+..+..
T Consensus 691 ~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 691 VGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred cchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 24444445555555555554444433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-15 Score=172.88 Aligned_cols=305 Identities=12% Similarity=0.079 Sum_probs=230.0
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhH--HHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhc
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYS--LVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLY 532 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a--~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y 532 (967)
.++......|...+..|+|+.|.+.+.++.+..|... ....|+++..+|+.
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~--------------------------- 134 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDE--------------------------- 134 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCH---------------------------
Confidence 3555667789999999999999999999999866433 33334444444433
Q ss_pred CChHHHHHHHHHhHhhCCCCc-hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHH
Q 002100 533 CSGKEKMMDLNTATELDPTLS-YPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVR 610 (967)
Q Consensus 533 ~~~~~A~~~~~~al~l~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~ 610 (967)
+.|...+.++.+..|+.. .+...++.+++..|++++|+..++++++..| ++.++..++.++...|++++|++.+.
T Consensus 135 ---~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~ 211 (409)
T TIGR00540 135 ---ARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIID 211 (409)
T ss_pred ---HHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 778888888888888875 4566679999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCC----CChHHHHHHHH
Q 002100 611 ALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDP----GKSLLRFRQSL 686 (967)
Q Consensus 611 ~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p----~~~~~~~~~g~ 686 (967)
+.++..+.++....... ...+ .+..+++ ........+.++.+..| +++.++...+.
T Consensus 212 ~l~k~~~~~~~~~~~l~-----~~a~--~~~l~~~-------------~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~ 271 (409)
T TIGR00540 212 NMAKAGLFDDEEFADLE-----QKAE--IGLLDEA-------------MADEGIDGLLNWWKNQPRHRRHNIALKIALAE 271 (409)
T ss_pred HHHHcCCCCHHHHHHHH-----HHHH--HHHHHHH-------------HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHH
Confidence 99988554444331110 0111 1111111 00112556667777677 57889999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchhHHH--HHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCc
Q 002100 687 LLLRLNSQKAAMRSLRLARNYSTSEHEKL--VYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPES 764 (967)
Q Consensus 687 ~~~~~g~~~~A~~~l~~al~~~p~~~~a~--~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~ 764 (967)
.+...|++++|+..++++++..|++.... ..........++.+++++.++++++..|+++
T Consensus 272 ~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~------------------ 333 (409)
T TIGR00540 272 HLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP------------------ 333 (409)
T ss_pred HHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh------------------
Confidence 99999999999999999999999886532 2233334445778888888888888877544
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHH--HHhccCcHH-HHHHHHHHHHHhCCHHHHHHHH
Q 002100 765 SAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYM--NALNIKHTR-AHQGLARVYHLKNQRKAAYDEM 841 (967)
Q Consensus 765 ~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~--~Al~~~~~~-a~~~la~~~~~~g~~~~A~~~~ 841 (967)
. ...+..+|.+++..|++++|.++|+ ++++..|.. .+..+|.++.++|+.++|.+.|
T Consensus 334 -------------------~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 334 -------------------K-CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred -------------------h-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1 2567789999999999999999999 576644433 4669999999999999999999
Q ss_pred HHHHHH
Q 002100 842 TKLIEK 847 (967)
Q Consensus 842 ~~al~~ 847 (967)
++++..
T Consensus 394 ~~~l~~ 399 (409)
T TIGR00540 394 QDSLGL 399 (409)
T ss_pred HHHHHH
Confidence 998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=174.07 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=88.9
Q ss_pred HHHHHHHHhcCC---C-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 664 LAVVHHMLANDP---G-KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 664 l~~~~~~l~~~p---~-~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
+..+.+++...| . .+..++.+|.+|...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++
T Consensus 46 i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 125 (296)
T PRK11189 46 LARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVL 125 (296)
T ss_pred HHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666664333 2 245566777777777777777777777777777777777777777777777777777777777
Q ss_pred hcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH
Q 002100 740 SIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR 819 (967)
Q Consensus 740 ~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 819 (967)
+++|++. .++.++|.++...|++++|++.|+++++.+|.+
T Consensus 126 ~l~P~~~----------------------------------------~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 126 ELDPTYN----------------------------------------YAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred HhCCCCH----------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 7777555 566667776666677777776666666654443
Q ss_pred HHHHH-HHHHHHhCCHHHHHHHHHHHHH
Q 002100 820 AHQGL-ARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 820 a~~~l-a~~~~~~g~~~~A~~~~~~al~ 846 (967)
.+..+ ..+....+++++|+..+.+.+.
T Consensus 166 ~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 166 PYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 22111 1123344556666666655443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.9e-14 Score=173.41 Aligned_cols=376 Identities=13% Similarity=0.034 Sum_probs=264.7
Q ss_pred HHHhhcCChHHHHHHHHHHHHhCc----hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcc------hhHHHHHhhcCC
Q 002100 465 VVMLEREEYKDAQNWFKAAVEAGH----IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPV------GWMYQERSLYCS 534 (967)
Q Consensus 465 ~~~~~~g~y~~A~~~f~~al~~~~----~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~------g~~~~~~~~y~~ 534 (967)
..+.+.|++++|++.|++..+.+. ......+...+.+.|...+|...+..... ++. -..+...+ +
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~LL~a~~k~g---~ 452 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNMLMSVCASSQ---D 452 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCc---C
Confidence 345578999999999998877653 11222344556778888888888876654 221 11222223 5
Q ss_pred hHHHHHHHHHhHhhCC-CCchhHHHHHHHHHhcCcHHHHHHHHHHHhcc--CCChhHHHHHHHHHHHhcCHHHHHHHHHH
Q 002100 535 GKEKMMDLNTATELDP-TLSYPYKYRAILLVEENKLAAAITEINRIIGF--KVSPDCLELRAWISIALEDYDGALRDVRA 611 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~g~~~~A~~~~~~ 611 (967)
.++|...|++..+... -+...|..+-..|.+.|++++|.+.|++..+. .|+...|..+...|.+.|++++|++.|..
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5889999988887643 35677888888999999999999999988765 45888889999999999999999999988
Q ss_pred HHHh--CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc----CCCChHHHHHHH
Q 002100 612 LLTL--DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN----DPGKSLLRFRQS 685 (967)
Q Consensus 612 al~l--~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~----~p~~~~~~~~~g 685 (967)
..+. .|+. ..+ ..+-..+...+++++| ...+.++... .|+ ...|..+.
T Consensus 533 M~~~Gv~PD~-vTY------nsLI~a~~k~G~~deA------------------~~lf~eM~~~~~gi~PD-~vTynaLI 586 (1060)
T PLN03218 533 MRSKNVKPDR-VVF------NALISACGQSGAVDRA------------------FDVLAEMKAETHPIDPD-HITVGALM 586 (1060)
T ss_pred HHHcCCCCCH-HHH------HHHHHHHHHCCCHHHH------------------HHHHHHHHHhcCCCCCc-HHHHHHHH
Confidence 8665 4552 333 3344556667777777 7777777652 343 45677777
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--ccchHHHHHHHHHhhhcCCCC
Q 002100 686 LLLLRLNSQKAAMRSLRLARNYS-TSEHEKLVYEGWILYDTGHREEALAKAEESISI--QRSFEAFFLKAYALADSSLNP 762 (967)
Q Consensus 686 ~~~~~~g~~~~A~~~l~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~~~~la~~~~~~ 762 (967)
..|.+.|++++|.+.|+...+.. +.+...|..+...|.+.|++++|+..|++..+. .|+
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD------------------ 648 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD------------------ 648 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------------------
Confidence 88899999999999999988876 445678888888999999999999999887754 332
Q ss_pred CchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhCCHHHHHH
Q 002100 763 ESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK---HTRAHQGLARVYHLKNQRKAAYD 839 (967)
Q Consensus 763 ~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~---~~~a~~~la~~~~~~g~~~~A~~ 839 (967)
...|..+...|...|++++|.+.|++..+.+ ....+..+...|.+.|++++|.+
T Consensus 649 -----------------------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~ 705 (1060)
T PLN03218 649 -----------------------EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705 (1060)
T ss_pred -----------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 1356666677777777777777777777633 22367777777777777777777
Q ss_pred HHHHHHHHc-cCCHHHHHHHH----ccCChHHHHHHHHHhhcc--CCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 002100 840 EMTKLIEKA-RNNASAYEKRS----EYCDRDMAKSDLSMATQL--DPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFK 912 (967)
Q Consensus 840 ~~~~al~~~-p~~~~~~~~~~----~~~~~~~A~~~l~~al~l--~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~ 912 (967)
.|++..+.. ..+...|..+- ..|+.++|+..|++..+. .|+ ...|..+-..+.+.|++++|...+.++++..
T Consensus 706 lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 706 LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 777765532 12344444443 237777777777765543 343 4555666677777788888888888777654
Q ss_pred C
Q 002100 913 P 913 (967)
Q Consensus 913 p 913 (967)
.
T Consensus 785 i 785 (1060)
T PLN03218 785 I 785 (1060)
T ss_pred C
Confidence 3
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-16 Score=185.63 Aligned_cols=269 Identities=12% Similarity=-0.006 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchH
Q 002100 588 CLELRAWISIAL---EDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSL 664 (967)
Q Consensus 588 ~~~~la~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al 664 (967)
.++++|..+... +++++|+..|+++++++|++..++ ..++.++...+.+... ....+...|+
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~------~~La~~~~~~~~~g~~---------~~~~~~~~A~ 324 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPY------CALAECYLSMAQMGIF---------DKQNAMIKAK 324 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHH------HHHHHHHHHHHHcCCc---------ccchHHHHHH
Confidence 455566554433 457889999999999999988887 4445554433221000 0000112348
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccc
Q 002100 665 AVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRS 744 (967)
Q Consensus 665 ~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 744 (967)
..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.
T Consensus 325 ~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~ 404 (553)
T PRK12370 325 EHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT 404 (553)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred hHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc---CcHHHH
Q 002100 745 FEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI---KHTRAH 821 (967)
Q Consensus 745 ~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~---~~~~a~ 821 (967)
+. .++..++.++...|++++|+..++++++. +.+.++
T Consensus 405 ~~----------------------------------------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~ 444 (553)
T PRK12370 405 RA----------------------------------------AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILL 444 (553)
T ss_pred Ch----------------------------------------hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHH
Confidence 55 34444555667788899999999988863 344578
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHH
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEA 901 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA 901 (967)
..+|.++..+|++++|...+.++....|. ...++..++.+|...|+ +|
T Consensus 445 ~~la~~l~~~G~~~eA~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~g~--~a 492 (553)
T PRK12370 445 SMQVMFLSLKGKHELARKLTKEISTQEIT------------------------------GLIAVNLLYAEYCQNSE--RA 492 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhccch------------------------------hHHHHHHHHHHHhccHH--HH
Confidence 88899998899988888888776655554 33444445555555552 55
Q ss_pred HHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 902 IAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 902 i~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
...+++.++.... +.-....+.+|.-.|+.+.|... +++.+.
T Consensus 493 ~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 493 LPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 5555554433222 11122255666666666666655 555443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-15 Score=170.40 Aligned_cols=305 Identities=11% Similarity=0.099 Sum_probs=230.9
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhC--chhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhc
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAG--HIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLY 532 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~--~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y 532 (967)
.++...+..|...+..|+|++|++...++-+.. |.-.....+++...+|+
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~---------------------------- 133 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGD---------------------------- 133 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCC----------------------------
Confidence 456667788999999999999998888877653 22222222333333333
Q ss_pred CChHHHHHHHHHhHhhCCCCchh-HHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHH
Q 002100 533 CSGKEKMMDLNTATELDPTLSYP-YKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVR 610 (967)
Q Consensus 533 ~~~~~A~~~~~~al~l~P~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~ 610 (967)
.+.|...|.++.+.+|++..+ ....+.++...|++++|+..++++++.+| ++.++..++.+|...|++++|++.+.
T Consensus 134 --~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~ 211 (398)
T PRK10747 134 --EARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILP 211 (398)
T ss_pred --HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 388888899999988887544 34558999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 002100 611 ALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR 690 (967)
Q Consensus 611 ~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~ 690 (967)
++.+..+.++............+++....++-+ + ......++..-+..|+++.+....+..+..
T Consensus 212 ~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~-~---------------~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~ 275 (398)
T PRK10747 212 SMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG-S---------------EGLKRWWKNQSRKTRHQVALQVAMAEHLIE 275 (398)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC-H---------------HHHHHHHHhCCHHHhCCHHHHHHHHHHHHH
Confidence 999887665444321110001111111111100 0 111233333334457789999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHH
Q 002100 691 LNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQ 770 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~ 770 (967)
.|+.++|...++++++..| ++......+.+ ..++.+++++.+++.++.+|+++
T Consensus 276 ~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~------------------------ 328 (398)
T PRK10747 276 CDDHDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTP------------------------ 328 (398)
T ss_pred CCCHHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCH------------------------
Confidence 9999999999999999544 45544444444 44899999999999999999776
Q ss_pred HHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002100 771 LLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR-AHQGLARVYHLKNQRKAAYDEMTKLIEKA 848 (967)
Q Consensus 771 ~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~-a~~~la~~~~~~g~~~~A~~~~~~al~~~ 848 (967)
..+..+|.++...+++++|.++|+++++..|.. .+..++.++..+|+.++|..+|++++...
T Consensus 329 ----------------~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 329 ----------------LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred ----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 788899999999999999999999999987776 56899999999999999999999998754
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.9e-16 Score=168.50 Aligned_cols=221 Identities=14% Similarity=0.102 Sum_probs=175.6
Q ss_pred cCHHHHHHHHHHHHhcC---Cc-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHH
Q 002100 692 NSQKAAMRSLRLARNYS---TS-EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAY 767 (967)
Q Consensus 692 g~~~~A~~~l~~al~~~---p~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~ 767 (967)
+..+.++..+.+++... |. .+..++.+|.++...|++++|+..|+++++++|++.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~--------------------- 98 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA--------------------- 98 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH---------------------
Confidence 46788999999999643 33 367899999999999999999999999999999776
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002100 768 VIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH--TRAHQGLARVYHLKNQRKAAYDEMTKLI 845 (967)
Q Consensus 768 a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al 845 (967)
.+|+++|.++...|++++|+..|+++++++| ..++.++|.++...|++++|++.|++++
T Consensus 99 -------------------~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 99 -------------------DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY 159 (296)
T ss_pred -------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999555 5699999999999999999999999999
Q ss_pred HHccCCHH--HHHHHH-ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHH--HHHHHHHHH----hcCCC-h
Q 002100 846 EKARNNAS--AYEKRS-EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE--AIAELSRAI----AFKPD-L 915 (967)
Q Consensus 846 ~~~p~~~~--~~~~~~-~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e--Ai~~~~kal----~~~p~-~ 915 (967)
+.+|+++. .|.... ..++.++|+..|.+++...+..... .+.++...|+..+ +++.+.+.+ ++.|. .
T Consensus 160 ~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (296)
T PRK11189 160 QDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG---WNIVEFYLGKISEETLMERLKAGATDNTELAERLC 236 (296)
T ss_pred HhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH---HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999874 222222 2378999999998777554333222 3455555666543 343333333 33444 3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CchhHHHHH
Q 002100 916 QLLHLRAAFHDSMGDHLHTQRDCEAALCLDP-NHTDTLELY 955 (967)
Q Consensus 916 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~~l~l~ 955 (967)
++|+++|.++..+|++++|+..|++|++.+| ++.+..-.+
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~ 277 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYAL 277 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 5899999999999999999999999999996 665554433
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.8e-14 Score=174.87 Aligned_cols=185 Identities=9% Similarity=-0.015 Sum_probs=131.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCC
Q 002100 682 FRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLN 761 (967)
Q Consensus 682 ~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~ 761 (967)
..+-..|.+.|+.++|...|+.. +.+..+|..+...|...|+.++|++.|++..+...
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~------------------ 585 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV------------------ 585 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------------
Confidence 34445555555555555555543 23344555555555555555555555555443211
Q ss_pred CCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc---cCcH-HHHHHHHHHHHHhCCHHHH
Q 002100 762 PESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN---IKHT-RAHQGLARVYHLKNQRKAA 837 (967)
Q Consensus 762 ~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---~~~~-~a~~~la~~~~~~g~~~~A 837 (967)
. .+...|..+-..+...|++++|..+|+...+ ..|. ..+..+..++.+.|++++|
T Consensus 586 --------------------~-Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 586 --------------------N-PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred --------------------C-CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 1 1123566676788999999999999999884 3343 3788899999999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHH----ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 002100 838 YDEMTKLIEKARNNASAYEKRS----EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAF 911 (967)
Q Consensus 838 ~~~~~~al~~~p~~~~~~~~~~----~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~ 911 (967)
.+.+++. ...|+ ...|..+- ..++.+.+....+++++++|+++..|..++.+|...|++++|.+..+...+.
T Consensus 645 ~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 645 YNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 9999875 23444 44444433 2388999999999999999999999999999999999999999999888754
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-17 Score=179.71 Aligned_cols=252 Identities=19% Similarity=0.139 Sum_probs=112.1
Q ss_pred hhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 002100 633 ETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN--DPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS 710 (967)
Q Consensus 633 ~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~ 710 (967)
+.++...+++++| +.++.+.+.. .|.++..|..+|.+....++++.|+..|++.+..++.
T Consensus 15 A~~~~~~~~~~~A------------------l~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~ 76 (280)
T PF13429_consen 15 ARLLYQRGDYEKA------------------LEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccc------------------ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5556666666666 6666544433 3666666777777777777777777777777777777
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHH
Q 002100 711 EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALN 790 (967)
Q Consensus 711 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~ 790 (967)
++..+..++.+ ...+++++|+..++++.+..++. ..+.
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~-----------------------------------------~~l~ 114 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP-----------------------------------------RYLL 114 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccc-ccccccccccccccccccccccc-----------------------------------------chhh
Confidence 66666666666 56677777777776666444321 3455
Q ss_pred HhHHHHHhcccHHHHHHHHHHHhcc----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cC
Q 002100 791 NLGSVYVDCEKLDLAADCYMNALNI----KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YC 862 (967)
Q Consensus 791 ~lg~~~~~~g~~~~A~~~~~~Al~~----~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~ 862 (967)
....++...++++++...++++... .....+..+|.++.+.|++++|+..|+++++.+|++..+...++. .+
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMG 194 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence 5667788999999999999997652 234588899999999999999999999999999999998888873 28
Q ss_pred ChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 863 DRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAA 941 (967)
Q Consensus 863 ~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~a 941 (967)
+.+++...++...+..|+++..+..+|.++...|++++|+..|+++++.+|+ +..+..+|.++...|+.++|...++++
T Consensus 195 ~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 195 DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888888888888888999999999999999999999999999999999997 568889999999999999999999998
Q ss_pred Hhc
Q 002100 942 LCL 944 (967)
Q Consensus 942 l~~ 944 (967)
+..
T Consensus 275 ~~~ 277 (280)
T PF13429_consen 275 LRL 277 (280)
T ss_dssp ---
T ss_pred ccc
Confidence 753
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-17 Score=179.00 Aligned_cols=230 Identities=17% Similarity=0.143 Sum_probs=58.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhC--c--hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHH
Q 002100 462 QLGVVMLEREEYKDAQNWFKAAVEAG--H--IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKE 537 (967)
Q Consensus 462 ~lG~~~~~~g~y~~A~~~f~~al~~~--~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~ 537 (967)
.++.+++..|++++|.+.+++.+... + ...+..++.+....++++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~------------------------------ 62 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDE------------------------------ 62 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc------------------------------
Confidence 56889999999999999997655442 3 3334444555545555544
Q ss_pred HHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Q 002100 538 KMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLD- 616 (967)
Q Consensus 538 A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~- 616 (967)
|+..|++++..++.++..+..++.+ ...+++++|+..+.++.+..+++..+.....++...++++++...++++....
T Consensus 63 A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 141 (280)
T PF13429_consen 63 AIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA 141 (280)
T ss_dssp --------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-
T ss_pred ccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC
Confidence 4444444444444444444444444 44455555555555444444444444444444555555555555555444332
Q ss_pred -CCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH
Q 002100 617 -PSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQK 695 (967)
Q Consensus 617 -p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~ 695 (967)
|.++..+ ...+.++...|++++| +..++++++.+|+++.+...++.++...|+++
T Consensus 142 ~~~~~~~~------~~~a~~~~~~G~~~~A------------------~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~ 197 (280)
T PF13429_consen 142 APDSARFW------LALAEIYEQLGDPDKA------------------LRDYRKALELDPDDPDARNALAWLLIDMGDYD 197 (280)
T ss_dssp --T-HHHH------HHHHHHHHHCCHHHHH------------------HHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHH
T ss_pred CCCCHHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHcCCCCHHHHHHHHHHHHHCCChH
Confidence 2333333 3344444444555444 45555555555555555555555555555555
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 696 AAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 696 ~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
++...++...+..|.++..+..+|.++..+|++++|+..|++++..+|+++
T Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 198 EAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 544444444444444444444555555555555555555555555444333
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=159.68 Aligned_cols=242 Identities=15% Similarity=0.077 Sum_probs=212.9
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETL 635 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l 635 (967)
...+|.+|++.|-+.+|.+.++..++..|.++.+.+++.+|....+...|+..|.+.++..|.+.... .-.+.+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l------~g~ARi 299 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYL------LGQARI 299 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhh------hhhHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999988877 556788
Q ss_pred HHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHH
Q 002100 636 QPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKL 715 (967)
Q Consensus 636 ~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~ 715 (967)
+..+++++.| ++.|+.+++.+|.+..+.--+|.-|+.-++++-|++.|++.++..-.+++.+
T Consensus 300 ~eam~~~~~a------------------~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf 361 (478)
T KOG1129|consen 300 HEAMEQQEDA------------------LQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELF 361 (478)
T ss_pred HHHHHhHHHH------------------HHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHH
Confidence 9999999888 8999999999999988888888888889999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHH
Q 002100 716 VYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSV 795 (967)
Q Consensus 716 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~ 795 (967)
.++|.+.+..++++-++..|++++....+.. ..++.|+|+|.+
T Consensus 362 ~NigLCC~yaqQ~D~~L~sf~RAlstat~~~-------------------------------------~aaDvWYNlg~v 404 (478)
T KOG1129|consen 362 CNIGLCCLYAQQIDLVLPSFQRALSTATQPG-------------------------------------QAADVWYNLGFV 404 (478)
T ss_pred hhHHHHHHhhcchhhhHHHHHHHHhhccCcc-------------------------------------hhhhhhhcccee
Confidence 9999999999999999999999986654222 445789999999
Q ss_pred HHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHH
Q 002100 796 YVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKR 858 (967)
Q Consensus 796 ~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 858 (967)
....|++.-|..+|+-++. .+|..++.+||.+..+.|+.++|..+++.+-...|.-.+...++
T Consensus 405 aV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 405 AVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred EEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 9999999999999999998 44556999999999999999999999999988888755544443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.2e-13 Score=164.41 Aligned_cols=469 Identities=9% Similarity=-0.037 Sum_probs=297.1
Q ss_pred cccchHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHH
Q 002100 434 MKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMN 513 (967)
Q Consensus 434 ~~~~~~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~ 513 (967)
.+...+..+++.+.+.....+. ...+..+-..+...|..++|...|+.... .....+..+-..+.+.|+.+.|..++.
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~-~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~~lf~ 461 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMD-KIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGALRVLR 461 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3445555555555443222222 22233344556677888888888876654 234555566677788888888888888
Q ss_pred HHHhcc-Cc-------chhHHHHHhhcCChHHHHHHHHHhHhhCCC-CchhHHHHHHHHHhcCcHHHHHHHHHHHhc--c
Q 002100 514 SLISDY-TP-------VGWMYQERSLYCSGKEKMMDLNTATELDPT-LSYPYKYRAILLVEENKLAAAITEINRIIG--F 582 (967)
Q Consensus 514 ~~i~~~-~~-------~g~~~~~~~~y~~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~ 582 (967)
.+.+.- .+ +-.+|.+.+ +.++|...|++..+.... +...|..+...|.+.|++++|++.|++... .
T Consensus 462 ~M~~~Gl~pD~~tynsLI~~y~k~G---~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv 538 (1060)
T PLN03218 462 LVQEAGLKADCKLYTTLISTCAKSG---KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCc---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 877622 11 222333333 558888888888765432 567788888888888888888888888754 4
Q ss_pred CCChhHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccc
Q 002100 583 KVSPDCLELRAWISIALEDYDGALRDVRALLT----LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSV 658 (967)
Q Consensus 583 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~----l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~ 658 (967)
.|+...|..+...|.+.|++++|.+.|.+... +.|+. ..+ ..+-..+...+++++|
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-vTy------naLI~ay~k~G~ldeA------------- 598 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-ITV------GALMKACANAGQVDRA------------- 598 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-HHH------HHHHHHHHHCCCHHHH-------------
Confidence 45778888888888888888888888888865 24553 233 2333456677777777
Q ss_pred cccchHHHHHHHHhcC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHcCChHHHHHHH
Q 002100 659 DDIGSLAVVHHMLAND-PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY--STSEHEKLVYEGWILYDTGHREEALAKA 735 (967)
Q Consensus 659 d~~~al~~~~~~l~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~~ 735 (967)
+..|+++.+.+ +.+...|..+...|.+.|++++|+..|++..+. .|+ ...+..+...+.+.|++++|.+.+
T Consensus 599 -----~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 599 -----KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred -----HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 77788777765 445667778888888888888888888887765 454 456777888888888888888888
Q ss_pred HHHHhcc--cchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHh
Q 002100 736 EESISIQ--RSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNAL 813 (967)
Q Consensus 736 ~~al~~~--p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 813 (967)
++..+.. |+...+. .+.+.+...+..+.+..+++++.+.. .......|+.+...|.+.|++++|++.|++..
T Consensus 673 ~eM~k~G~~pd~~tyn----sLI~ay~k~G~~eeA~~lf~eM~~~g--~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 673 QDARKQGIKLGTVSYS----SLMGACSNAKNWKKALELYEDIKSIK--LRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHcCCCCCHHHHH----HHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8887643 3322111 22233334556677777777765431 12234578888888888888999988888876
Q ss_pred cc--CcH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC-CHHHHHHH-Hcc--------------------------C
Q 002100 814 NI--KHT-RAHQGLARVYHLKNQRKAAYDEMTKLIEKARN-NASAYEKR-SEY--------------------------C 862 (967)
Q Consensus 814 ~~--~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-~~~--------------------------~ 862 (967)
.. .|. ..+..+-..+.+.|++++|.+.+.++++.... +...|..+ +.+ .
T Consensus 747 ~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~ 826 (1060)
T PLN03218 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENK 826 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccc
Confidence 62 233 36677778888888888888888888775432 22222221 100 1
Q ss_pred ChHHHHHHHHHhhcc--CCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHcCCh-HHHHH
Q 002100 863 DRDMAKSDLSMATQL--DPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD---LQLLHLRAAFHDSMGDH-LHTQR 936 (967)
Q Consensus 863 ~~~~A~~~l~~al~l--~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~---~~~~~~~a~~~~~~g~~-~~A~~ 936 (967)
..++|+..|++.++. .|+.. .+..+-.++...+....+...++... ..|. ...|..+-..+ +++ ++|..
T Consensus 827 w~~~Al~lf~eM~~~Gi~Pd~~-T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~---~~~~~~A~~ 901 (1060)
T PLN03218 827 WTSWALMVYRETISAGTLPTME-VLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGF---GEYDPRAFS 901 (1060)
T ss_pred hHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhh---ccChHHHHH
Confidence 134566666666553 34433 23333245566666666666655432 2332 12222222222 333 57888
Q ss_pred HHHHHHhc
Q 002100 937 DCEAALCL 944 (967)
Q Consensus 937 ~~~~al~~ 944 (967)
.++.+...
T Consensus 902 l~~em~~~ 909 (1060)
T PLN03218 902 LLEEAASL 909 (1060)
T ss_pred HHHHHHHc
Confidence 88777654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.7e-16 Score=168.23 Aligned_cols=247 Identities=14% Similarity=0.107 Sum_probs=201.4
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
+..+|.-.|+.|++.+|.++++|..+|.+..+.++-..||..+.++++++| +.+++..||..|.+.|.-.+|++.+.+-
T Consensus 300 ~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~W 379 (579)
T KOG1125|consen 300 DLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKW 379 (579)
T ss_pred CchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 448999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCC--CChHHHHHHHHHHHH
Q 002100 613 LTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDP--GKSLLRFRQSLLLLR 690 (967)
Q Consensus 613 l~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p--~~~~~~~~~g~~~~~ 690 (967)
|...|.+......-. ... ....+.+....-+ ......|..+....| .++.+...+|.+|..
T Consensus 380 i~~~p~y~~l~~a~~--~~~---~~~~~s~~~~~~l------------~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 380 IRNKPKYVHLVSAGE--NED---FENTKSFLDSSHL------------AHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred HHhCccchhccccCc--ccc---ccCCcCCCCHHHH------------HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 999887554331000 000 0000001111000 011455666677777 688999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHH
Q 002100 691 LNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQ 770 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~ 770 (967)
.++|++|+.+|+.|+...|++...|..+|.++-...+.++|+..|.+|+++.|.+.
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV------------------------ 498 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV------------------------ 498 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee------------------------
Confidence 99999999999999999999999999999999999999999999999999999877
Q ss_pred HHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH------------HHHHHHHHHHHHhCCHHHH
Q 002100 771 LLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT------------RAHQGLARVYHLKNQRKAA 837 (967)
Q Consensus 771 ~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~------------~a~~~la~~~~~~g~~~~A 837 (967)
.+.+|||..++.+|.|++|+++|-.||.+... .+|..|=.++...++.+-+
T Consensus 499 ----------------R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 499 ----------------RVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred ----------------eeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 78999999999999999999999999983221 2555555555666655543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-15 Score=145.07 Aligned_cols=206 Identities=17% Similarity=0.089 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhc
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADS 758 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~ 758 (967)
.++..+|.-|++.|++..|...++++++++|++..+|..++.+|...|+.+.|.+.|++|++++|++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G------------ 103 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG------------ 103 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc------------
Confidence 57788999999999999999999999999999999999999999999999999999999999999665
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhCCH
Q 002100 759 SLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN----IKHTRAHQGLARVYHLKNQR 834 (967)
Q Consensus 759 ~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----~~~~~a~~~la~~~~~~g~~ 834 (967)
++++|.|..+..+|++++|...|++|+. ..+.+++.++|.+..+.|+.
T Consensus 104 ----------------------------dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~ 155 (250)
T COG3063 104 ----------------------------DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQF 155 (250)
T ss_pred ----------------------------chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCc
Confidence 8999999999999999999999999999 34566999999999999998
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 835 KAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 835 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
+.|.++|+++++. +|+.+.+...++...++.|+|-.|..++++.....+-
T Consensus 156 ~~A~~~l~raL~~------------------------------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~ 205 (250)
T COG3063 156 DQAEEYLKRALEL------------------------------DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGA 205 (250)
T ss_pred hhHHHHHHHHHHh------------------------------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccc
Confidence 8888877766655 5566777888999999999999999999998876554
Q ss_pred -hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHH
Q 002100 915 -LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLEL 954 (967)
Q Consensus 915 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l 954 (967)
-+.+.+...+-...||.+.|-++=.+.-..+|+.++.-..
T Consensus 206 ~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f 246 (250)
T COG3063 206 QAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF 246 (250)
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence 4577777888999999999999999999999998876543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-16 Score=158.03 Aligned_cols=234 Identities=12% Similarity=0.055 Sum_probs=204.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhCc-hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChH
Q 002100 458 LAFHQLGVVMLEREEYKDAQNWFKAAVEAGH-IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGK 536 (967)
Q Consensus 458 ~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~-~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~ 536 (967)
..-.++|++|+..|-+.+|.+-|+.+++..+ ......|+++|.+..+. .
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP------------------------------~ 273 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQP------------------------------E 273 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccH------------------------------H
Confidence 3446799999999999999999999999855 77778888877554444 6
Q ss_pred HHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 537 EKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 537 ~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
.|+..|.+.++..|.+...+...|.++..++++++|.+.|+.+++.+| +.++....|.-|+--++.+-|+.+|+++|++
T Consensus 274 ~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm 353 (478)
T KOG1129|consen 274 RALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM 353 (478)
T ss_pred HHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHh
Confidence 777777777777888888888889999999999999999999999999 8888888888888899999999999999999
Q ss_pred CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCC---CChHHHHHHHHHHHHhc
Q 002100 616 DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDP---GKSLLRFRQSLLLLRLN 692 (967)
Q Consensus 616 ~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p---~~~~~~~~~g~~~~~~g 692 (967)
.-.++..+ .+++++....++++-+ +..|++++.... ...++|+++|.+....|
T Consensus 354 G~~speLf------~NigLCC~yaqQ~D~~------------------L~sf~RAlstat~~~~aaDvWYNlg~vaV~iG 409 (478)
T KOG1129|consen 354 GAQSPELF------CNIGLCCLYAQQIDLV------------------LPSFQRALSTATQPGQAADVWYNLGFVAVTIG 409 (478)
T ss_pred cCCChHHH------hhHHHHHHhhcchhhh------------------HHHHHHHHhhccCcchhhhhhhccceeEEecc
Confidence 88888888 7788888888888888 888888887543 34679999999999999
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch
Q 002100 693 SQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF 745 (967)
Q Consensus 693 ~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 745 (967)
++.-|.++|+-++..++++.++++++|.+-.+.|+.++|..++..+-...|+.
T Consensus 410 D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 410 DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 99999999999999999999999999999999999999999999999999843
|
|
| >PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-17 Score=152.81 Aligned_cols=105 Identities=28% Similarity=0.396 Sum_probs=93.0
Q ss_pred cccCCCCcccEEEEEc-CeEEEehhHHHhccCHHHHHhhcCC-CCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCC
Q 002100 248 ECSTSDEDWDMSFCIG-NDEIRCVRYKIASLSRPFRTMLYGG-FIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFD 325 (967)
Q Consensus 248 ~~~~~~~~~Dv~~~v~-~~~~~~hr~vLa~~S~~F~~~~~~~-~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~ 325 (967)
++++++.++||+|.|+ +++|+|||.||+++|+||+.||.+. +.+....+|.+++ +++++|+.+++|+|+|++ .++
T Consensus 3 ~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~l~~~Y~~~~-~~~ 79 (111)
T PF00651_consen 3 DLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPD--VSPEAFEAFLEYMYTGEI-EIN 79 (111)
T ss_dssp HHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETT--SCHHHHHHHHHHHHHSEE-EEE
T ss_pred HHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccc--ccccccccccccccCCcc-cCC
Confidence 3455678999999999 8999999999999999999999998 6777767889976 999999999999999999 777
Q ss_pred -HHHHHHHHHHhchhChHHHHHHHHHHHHhh
Q 002100 326 -PRLVLELLSFANRFCCEELKSACDSYLASM 355 (967)
Q Consensus 326 -~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 355 (967)
.+++.+++.+|++|+++.|+..|..+|.+.
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 899999999999999999999999999764
|
The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A .... |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-13 Score=149.96 Aligned_cols=433 Identities=17% Similarity=0.097 Sum_probs=235.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhC--chhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChH
Q 002100 459 AFHQLGVVMLEREEYKDAQNWFKAAVEAG--HIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGK 536 (967)
Q Consensus 459 a~~~lG~~~~~~g~y~~A~~~f~~al~~~--~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~ 536 (967)
++|....-.++.++|...++..+..|+-. |..+++..+......|+.+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~------------------------------ 58 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKE------------------------------ 58 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchH------------------------------
Confidence 44555555566677777777777777652 3555555555555555554
Q ss_pred HHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 537 EKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 537 ~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
+|......++..++.....|..+|.++...++|++|+++|..|+.++| |...+.-++.+..++++++.....-.+.+++
T Consensus 59 ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql 138 (700)
T KOG1156|consen 59 EAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL 138 (700)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 444455555555555555555555555555556666666666665555 5555555555555556665555555555555
Q ss_pred CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh-----HHHHHHHHHHHH
Q 002100 616 DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS-----LLRFRQSLLLLR 690 (967)
Q Consensus 616 ~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~-----~~~~~~g~~~~~ 690 (967)
.|.+...| .-.+..+...++|..| .+-++.|.+.....|... .....+...+..
T Consensus 139 ~~~~ra~w------~~~Avs~~L~g~y~~A---------------~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E 197 (700)
T KOG1156|consen 139 RPSQRASW------IGFAVAQHLLGEYKMA---------------LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE 197 (700)
T ss_pred hhhhHHHH------HHHHHHHHHHHHHHHH---------------HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 55555555 3334455555555555 111222222222112211 122223333444
Q ss_pred hcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHH
Q 002100 691 LNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQ 770 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~ 770 (967)
.|.+++|.+.+..--..--+........|.++++++++++|...|...+..+|++..++.......-.. .........
T Consensus 198 ~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~--~d~~~~lk~ 275 (700)
T KOG1156|consen 198 AGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKI--KDMLEALKA 275 (700)
T ss_pred cccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHH--hhhHHHHHH
Confidence 444444444333321111111222233455555555555555555555555555444432222111000 000000001
Q ss_pred HHHHHhcCCCCC---------------------------Cch--HHHHHHhHHHHHhccc---HHHHHHHHHHHhccC--
Q 002100 771 LLEEALRCPSDG---------------------------LRK--GQALNNLGSVYVDCEK---LDLAADCYMNALNIK-- 816 (967)
Q Consensus 771 ~le~~~~~~~~~---------------------------~~~--~~a~~~lg~~~~~~g~---~~~A~~~~~~Al~~~-- 816 (967)
++....+.+... ..+ ......+-..|..-.+ .++=+..|...+...
T Consensus 276 ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~ 355 (700)
T KOG1156|consen 276 LYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGM 355 (700)
T ss_pred HHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccC
Confidence 111111111100 000 0111222222221111 122222333333311
Q ss_pred ----------cHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccC
Q 002100 817 ----------HTR----AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLD 878 (967)
Q Consensus 817 ----------~~~----a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~ 878 (967)
++. .++.++.-+...|+++.|..+++.+|..-|...+.|...+. .|+.++|...++.+.++|
T Consensus 356 f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 356 FNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred CCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 222 45668889999999999999999999999999999987774 399999999999999999
Q ss_pred CCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-----h--H-HHHH--HHHHHHHcCChHHHHHHHHHHHhc
Q 002100 879 PMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-----L--Q-LLHL--RAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 879 p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-----~--~-~~~~--~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
-.+..+-..-|.-..+.++.++|.+.+.+.-...-+ . + .|+. -|.+|.++|++-.|++-|..+-..
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 888887777888888999999999988877654422 1 1 4444 488999999999998877665433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-11 Score=131.50 Aligned_cols=470 Identities=11% Similarity=0.028 Sum_probs=325.3
Q ss_pred chHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchh--HHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHh
Q 002100 453 SWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIY--SLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERS 530 (967)
Q Consensus 453 ~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~--a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~ 530 (967)
+.-....|...|.--..++++..|...|++||..+..+ .+...+..-.+......|..++++++...|..-....+.-
T Consensus 69 nR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 69 NRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 33445567778888889999999999999999997633 4445566666777777999999999998876543332211
Q ss_pred ----hcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHH
Q 002100 531 ----LYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGAL 606 (967)
Q Consensus 531 ----~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~ 606 (967)
..++..-|.+.|++-++..|+ ..+|...-..-.+.+.++.|...|++.+-..|....+...|..-...|+...|.
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 223668999999999999996 457777777778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHH
Q 002100 607 RDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSL 686 (967)
Q Consensus 607 ~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~ 686 (967)
..|.+|++.-.++.....-. ...+..-...+.++.| -..|.-++..-|.+..--...+.
T Consensus 228 ~VyerAie~~~~d~~~e~lf---vaFA~fEe~qkE~ERa------------------r~iykyAld~~pk~raeeL~k~~ 286 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILF---VAFAEFEERQKEYERA------------------RFIYKYALDHIPKGRAEELYKKY 286 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHH---HHHHHHHHHHHHHHHH------------------HHHHHHHHHhcCcccHHHHHHHH
Confidence 99999998766544333100 1112222233334444 44556666666655221111122
Q ss_pred HH--HHhcC---HHHHHH-----HHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch-HHHH------
Q 002100 687 LL--LRLNS---QKAAMR-----SLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF-EAFF------ 749 (967)
Q Consensus 687 ~~--~~~g~---~~~A~~-----~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~------ 749 (967)
.. -+-|+ .+.++- .|+..+..+|.+.++|+.+-.+....|+.+.-.+.|++|+..-|-. ...+
T Consensus 287 ~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIY 366 (677)
T KOG1915|consen 287 TAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIY 366 (677)
T ss_pred HHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHH
Confidence 21 12233 223332 4566677777777777777777777777777777777777665521 1111
Q ss_pred -HHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCC-CchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH-HHHHHHH
Q 002100 750 -LKAYALADSSLNPESSAYVIQLLEEALRCPSDG-LRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR-AHQGLAR 826 (967)
Q Consensus 750 -~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~-~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~-a~~~la~ 826 (967)
...|++-.. +..+..+.+.+++...++..+.. ..-+..|...+.....+.+...|.+.+-.|+...|.+ ...+.-.
T Consensus 367 LWinYalyeE-le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 367 LWINYALYEE-LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHHHH-HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHH
Confidence 111222111 22344555566666666644433 3455677788888889999999999999999977765 6666777
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHH--HHHhCCCHHH
Q 002100 827 VYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAA--VLMDDHKEAE 900 (967)
Q Consensus 827 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~--~~~~~g~~~e 900 (967)
+-.++++++.....|.+-|+..|.+..+|...+++ |+.+.|...|+-|+.....+...+...+. .-...|.++.
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek 525 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK 525 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH
Confidence 88889999999999999999999999999988854 99999999999998876555444443333 3345689999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHH-----HcC-----------ChHHHHHHHHHHHhcC
Q 002100 901 AIAELSRAIAFKPDLQLLHLRAAFHD-----SMG-----------DHLHTQRDCEAALCLD 945 (967)
Q Consensus 901 Ai~~~~kal~~~p~~~~~~~~a~~~~-----~~g-----------~~~~A~~~~~~al~~~ 945 (967)
|...|++.++..+...++...|.+-. ..+ +...|...|++|....
T Consensus 526 aR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~ 586 (677)
T KOG1915|consen 526 ARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYL 586 (677)
T ss_pred HHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHH
Confidence 99999999998887666666555544 444 5677888888876543
|
|
| >KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=164.88 Aligned_cols=181 Identities=16% Similarity=0.073 Sum_probs=161.1
Q ss_pred cccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccce--EEeccCCCCHHHHHHHHHhHcCCCCCC
Q 002100 246 DEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREK--VNFSQNGISVEAMRAAEEFSRTKMLDS 323 (967)
Q Consensus 246 ~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~--i~~~~~~~~~~~~~~~l~~~Yt~~~~~ 323 (967)
...++.+++-|||.+.+=|++.+.||..| ..|+||++||+|.|+|++++. ++|+|+.|+..+|..++.-+|.+++ +
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEv-e 137 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEV-E 137 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhe-e
Confidence 34455678889999999999999999999 678999999999999999985 5678889999999999999999999 9
Q ss_pred CCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhh--------hcCCc
Q 002100 324 FDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELP--------CSMQN 395 (967)
Q Consensus 324 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~--------~~l~~ 395 (967)
|..++|..+|++|..+++++|.+.|.+.+.+.++ +++++.+++.+-.|+...+++.|++|+..|+- ..++.
T Consensus 138 I~l~dv~gvlAaA~~lqldgl~qrC~evMie~ls-pkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~ 216 (488)
T KOG4682|consen 138 IKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLS-PKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISI 216 (488)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC-hhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCH
Confidence 9999999999999999999999999999999999 99999999999999999999999999999987 45666
Q ss_pred hhHhhhhccchHHHHHHhhcc-hHHHHHHHHHHhccCccc
Q 002100 396 PNVMRIFCSAEARERLAMVGH-ASFVLYYFLSQIGMEEDM 434 (967)
Q Consensus 396 ~~~~~ll~s~~~~~r~~~~~~-e~~~l~~~l~~l~~~~~~ 434 (967)
+-+..++.++++- +-+ |-.+|..+..|+-+....
T Consensus 217 ~Lm~~ll~SpnLf-----vmq~EfdLyttlk~WmfLql~p 251 (488)
T KOG4682|consen 217 NLMKQLLGSPNLF-----VMQVEFDLYTTLKKWMFLQLVP 251 (488)
T ss_pred HHHHHHhCCCCeE-----EEEeeehHHHHHHHHHHhhhcc
Confidence 7777888888877 555 556777788888765433
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-14 Score=152.28 Aligned_cols=373 Identities=13% Similarity=0.080 Sum_probs=255.2
Q ss_pred chHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhc
Q 002100 453 SWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLY 532 (967)
Q Consensus 453 ~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y 532 (967)
..+.+.-....|..++..++|.+|+..|..|++..|..+..+ .+....+...++|
T Consensus 45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy-------------------------~nRAa~~m~~~~~ 99 (486)
T KOG0550|consen 45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYY-------------------------SNRAATLMMLGRF 99 (486)
T ss_pred HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhh-------------------------chhHHHHHHHHhH
Confidence 345555667789999999999999999999999988664444 2234455556666
Q ss_pred CChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 533 CSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 533 ~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
++|+-+.++.++++|.....+...+.++...++..+|.+.|+.. .++ ....|+..+++.
T Consensus 100 ---~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~-------~~~-----------~~anal~~~~~~ 158 (486)
T KOG0550|consen 100 ---EEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSK-------QAY-----------KAANALPTLEKL 158 (486)
T ss_pred ---hhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhh-------hhh-----------HHhhhhhhhhcc
Confidence 99999999999999999999999999999988888888777611 111 122233333333
Q ss_pred HHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc
Q 002100 613 LTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLN 692 (967)
Q Consensus 613 l~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g 692 (967)
+..+...+... ....+.+.++...++++.| +..-...+++++.+..+++.+|.++....
T Consensus 159 ~~s~s~~pac~---~a~~lka~cl~~~~~~~~a------------------~~ea~~ilkld~~n~~al~vrg~~~yy~~ 217 (486)
T KOG0550|consen 159 APSHSREPACF---KAKLLKAECLAFLGDYDEA------------------QSEAIDILKLDATNAEALYVRGLCLYYND 217 (486)
T ss_pred cccccCCchhh---HHHHhhhhhhhhcccchhH------------------HHHHHHHHhcccchhHHHHhccccccccc
Confidence 33322111111 1115666677777777777 56666677777777777777777777777
Q ss_pred CHHHHHHHHHHHHhcCCchh------------HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCC
Q 002100 693 SQKAAMRSLRLARNYSTSEH------------EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSL 760 (967)
Q Consensus 693 ~~~~A~~~l~~al~~~p~~~------------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~ 760 (967)
+.+.|+..|++++.++|+.. +.+...|.-.++.|++.+|.+.|..+|.++|++.
T Consensus 218 ~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~-------------- 283 (486)
T KOG0550|consen 218 NADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK-------------- 283 (486)
T ss_pred chHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc--------------
Confidence 77777777777777777653 3466778888999999999999999999999654
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhCCHHHHH
Q 002100 761 NPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKNQRKAAY 838 (967)
Q Consensus 761 ~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~ 838 (967)
...+..|.+++.+....|+..+|+...+.|+++++.+ ++...|.++..+++|++|.
T Consensus 284 ----------------------~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 284 ----------------------KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred ----------------------chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1334678999999999999999999999999999887 8888999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh---
Q 002100 839 DEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL--- 915 (967)
Q Consensus 839 ~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~--- 915 (967)
+.|+++++...+ ......+ .+|...++++-+ ..-|..+|..... .+.+--..+=..+|...|+-
T Consensus 342 ~d~~~a~q~~~s-~e~r~~l------~~A~~aLkkSkR-----kd~ykilGi~~~a-s~~eikkayrk~AL~~Hpd~~ag 408 (486)
T KOG0550|consen 342 EDYEKAMQLEKD-CEIRRTL------REAQLALKKSKR-----KDWYKILGISRNA-SDDEIKKAYRKLALVHHPDKNAG 408 (486)
T ss_pred HHHHHHHhhccc-cchHHHH------HHHHHHHHHhhh-----hhHHHHhhhhhhc-ccchhhhHHHHHHHHhCCCcCcc
Confidence 999999987765 2222221 223333333222 1122223322221 11111112223455566651
Q ss_pred -----H-HHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 916 -----Q-LLHLRAAFHDSMGDHLHTQRDCEAA 941 (967)
Q Consensus 916 -----~-~~~~~a~~~~~~g~~~~A~~~~~~a 941 (967)
+ -....|..|..++|+.++.+...-.
T Consensus 409 sq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 409 SQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 1 3445788888888888887766544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.8e-16 Score=168.18 Aligned_cols=227 Identities=14% Similarity=0.101 Sum_probs=173.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCC
Q 002100 681 RFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSL 760 (967)
Q Consensus 681 ~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~ 760 (967)
-|..|..+++.|+..+|+-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl-------------- 353 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL-------------- 353 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH--------------
Confidence 356899999999999999999999999999999999999999999999999999999999999776
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHH---------h
Q 002100 761 NPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHL---------K 831 (967)
Q Consensus 761 ~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~---------~ 831 (967)
.++..||..|...|.-.+|..++.+=+...+.+.+...+..-.. .
T Consensus 354 --------------------------eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~ 407 (579)
T KOG1125|consen 354 --------------------------EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDS 407 (579)
T ss_pred --------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCH
Confidence 67777888888888888888888777665554444333211111 1
Q ss_pred CCHHHHHHHHHHHHHHcc--CCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHH
Q 002100 832 NQRKAAYDEMTKLIEKAR--NNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAEL 905 (967)
Q Consensus 832 g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~ 905 (967)
.....-.+.|-.+....| .+++++..+|.+ ++|++|+.+|+.|+..+|++...|..+|..+....+.++||..|
T Consensus 408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 122333455556666666 577777777732 77888888888888888888888888888888778888888888
Q ss_pred HHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002100 906 SRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPN 947 (967)
Q Consensus 906 ~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~ 947 (967)
++|+++.|.. .+.+++|..+..+|.|++|..+|-.||.+.+.
T Consensus 488 ~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 488 NRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 8888888874 47777888888888888888888888777655
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-13 Score=149.97 Aligned_cols=358 Identities=16% Similarity=0.149 Sum_probs=270.4
Q ss_pred HHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHH
Q 002100 528 ERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGAL 606 (967)
Q Consensus 528 ~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~ 606 (967)
+.++| .+.++..+..++.+|...+.+...|..+..+|+-++|......++..++ +..+|..+|.++...++|++|+
T Consensus 19 E~kQY---kkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 19 ETKQY---KKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHH---HhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence 44556 8999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHH
Q 002100 607 RDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSL 686 (967)
Q Consensus 607 ~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~ 686 (967)
++|+.|+.++|+|...+ .-++++..++++|+-. ...-.+.++..|.....|+..+.
T Consensus 96 Kcy~nAl~~~~dN~qil------rDlslLQ~QmRd~~~~------------------~~tr~~LLql~~~~ra~w~~~Av 151 (700)
T KOG1156|consen 96 KCYRNALKIEKDNLQIL------RDLSLLQIQMRDYEGY------------------LETRNQLLQLRPSQRASWIGFAV 151 (700)
T ss_pred HHHHHHHhcCCCcHHHH------HHHHHHHHHHHhhhhH------------------HHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999999999999 7788899998888877 77888999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcC---Cch-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhc
Q 002100 687 LLLRLNSQKAAMRSLRLARNYS---TSE-----HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADS 758 (967)
Q Consensus 687 ~~~~~g~~~~A~~~l~~al~~~---p~~-----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~ 758 (967)
.+...|++..|...++...+.. |+. .+.......++...|.+++|++.+..- .+...
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~---e~~i~------------ 216 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN---EKQIV------------ 216 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh---hhHHH------------
Confidence 9999999999999887776654 332 345566677778888888877766542 22111
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhCCHHH
Q 002100 759 SLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKNQRKA 836 (967)
Q Consensus 759 ~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~ 836 (967)
.+.......+.+++.++++++|+..|...+..+|.+ .+..+-.++.+-.+.-+
T Consensus 217 -------------------------Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~ 271 (700)
T KOG1156|consen 217 -------------------------DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLE 271 (700)
T ss_pred -------------------------HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHH
Confidence 111233446888999999999999999999977765 44445555543333333
Q ss_pred HH-HHHHHHHHHccCC-------------------HHHHHHHH--------------ccCChH------HHHHHHHHhhc
Q 002100 837 AY-DEMTKLIEKARNN-------------------ASAYEKRS--------------EYCDRD------MAKSDLSMATQ 876 (967)
Q Consensus 837 A~-~~~~~al~~~p~~-------------------~~~~~~~~--------------~~~~~~------~A~~~l~~al~ 876 (967)
+. ..|...-+..|.. .+-|.... .+.+.. +-+..|...+.
T Consensus 272 ~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~ 351 (700)
T KOG1156|consen 272 ALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLS 351 (700)
T ss_pred HHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcc
Confidence 44 4444433333320 00111110 112222 11122222222
Q ss_pred cC------------CCC--chHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 877 LD------------PMR--TYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAA 941 (967)
Q Consensus 877 l~------------p~~--~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~a 941 (967)
-. |-. .+.++.++.-+-..|+++.|..+++.||...|. .+.+...|+++.++|+.++|...+++|
T Consensus 352 ~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea 431 (700)
T KOG1156|consen 352 GTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEA 431 (700)
T ss_pred cccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 11 211 245667888999999999999999999999999 678888999999999999999999999
Q ss_pred HhcCCCchhHH
Q 002100 942 LCLDPNHTDTL 952 (967)
Q Consensus 942 l~~~P~~~~~l 952 (967)
-++|-.|.-+.
T Consensus 432 ~elD~aDR~IN 442 (700)
T KOG1156|consen 432 QELDTADRAIN 442 (700)
T ss_pred HhccchhHHHH
Confidence 99997766554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=153.00 Aligned_cols=200 Identities=17% Similarity=0.100 Sum_probs=170.3
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhh
Q 002100 677 KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALA 756 (967)
Q Consensus 677 ~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la 756 (967)
....++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---------- 99 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG---------- 99 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------
Confidence 4678889999999999999999999999999999999999999999999999999999999998888555
Q ss_pred hcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC----cHHHHHHHHHHHHHhC
Q 002100 757 DSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK----HTRAHQGLARVYHLKN 832 (967)
Q Consensus 757 ~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~----~~~a~~~la~~~~~~g 832 (967)
.++.++|.++...|++++|+..|++++... ....+..+|.++...|
T Consensus 100 ------------------------------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 100 ------------------------------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred ------------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 678889999999999999999999998732 2347788888988888
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 002100 833 QRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFK 912 (967)
Q Consensus 833 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~ 912 (967)
++++|...+.++++..| +++.++..+|.++...|++++|+..++++++..
T Consensus 150 ~~~~A~~~~~~~~~~~~------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 199 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDP------------------------------QRPESLLELAELYYLRGQYKDARAYLERYQQTY 199 (234)
T ss_pred CHHHHHHHHHHHHHhCc------------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888888877776555 445567778888999999999999999998886
Q ss_pred CC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 002100 913 PD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDP 946 (967)
Q Consensus 913 p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P 946 (967)
|. ...+..++.++...|+.++|....+.+....|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 200 NQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 66 45677788889999999999988888776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-14 Score=156.78 Aligned_cols=187 Identities=13% Similarity=0.138 Sum_probs=157.9
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcC-cHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCH--HHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEEN-KLAAAITEINRIIGFKV-SPDCLELRAWISIALEDY--DGALRDVRA 611 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~--~~A~~~~~~ 611 (967)
++|+..+.++|+++|++..+|..++.++..++ ++++|+..++++++.+| +..++..++.+...+++. ++++..+.+
T Consensus 54 erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~k 133 (320)
T PLN02789 54 PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRK 133 (320)
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHH
Confidence 78888888999999999999999999998888 57899999999999999 888899999888888874 678888889
Q ss_pred HHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 002100 612 LLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRL 691 (967)
Q Consensus 612 al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~ 691 (967)
+++.+|++..++ ..++.+....++|+++ ++.+.++|+.+|.+..+|..++.++...
T Consensus 134 al~~dpkNy~AW------~~R~w~l~~l~~~~ee------------------L~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 134 ILSLDAKNYHAW------SHRQWVLRTLGGWEDE------------------LEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHhCcccHHHH------HHHHHHHHHhhhHHHH------------------HHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 999999999888 6778888888888888 8999999999999999999988887765
Q ss_pred ---cCH----HHHHHHHHHHHhcCCchhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchH
Q 002100 692 ---NSQ----KAAMRSLRLARNYSTSEHEKLVYEGWILYD----TGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 692 ---g~~----~~A~~~l~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~ 746 (967)
+.+ ++++....+++..+|++..+|.+++.++.. +++..+|+..+.+++..+|+..
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence 223 467888889999999999999999999987 4556778888888887766544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-14 Score=151.74 Aligned_cols=197 Identities=16% Similarity=0.055 Sum_probs=146.0
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhh
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNL 631 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 631 (967)
+..+..+|..+...|++++|+..++++++.+| +..++..+|.++..+|++++|+..++++++..|++...+ ..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------~~ 104 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVL------NN 104 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH------HH
Confidence 56778888888888888888888888888888 778888888888888888888888888888888877666 55
Q ss_pred HhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 002100 632 VETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAND--PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST 709 (967)
Q Consensus 632 ~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~--p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p 709 (967)
++.++...+++++| +..+.+++... |.....+..+|.++...|++++|...++++++.+|
T Consensus 105 ~~~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 105 YGTFLCQQGKYEQA------------------MQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred HHHHHHHcccHHHH------------------HHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 67777777777777 66677766543 34455666777777777777777777777777777
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHH
Q 002100 710 SEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQAL 789 (967)
Q Consensus 710 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~ 789 (967)
++..++..+|.++...|++++|+..+++++...|... ..+
T Consensus 167 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------------------------------~~~ 206 (234)
T TIGR02521 167 QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTA----------------------------------------ESL 206 (234)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------------------------------HHH
Confidence 7777777777777777777777777777776654332 344
Q ss_pred HHhHHHHHhcccHHHHHHHHHHHh
Q 002100 790 NNLGSVYVDCEKLDLAADCYMNAL 813 (967)
Q Consensus 790 ~~lg~~~~~~g~~~~A~~~~~~Al 813 (967)
..++.++...|+.++|..+.+.+.
T Consensus 207 ~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 207 WLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555666666777777766665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.9e-14 Score=141.52 Aligned_cols=244 Identities=18% Similarity=0.172 Sum_probs=210.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCC
Q 002100 682 FRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLN 761 (967)
Q Consensus 682 ~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~ 761 (967)
|..|.-++-.++.++|+..|-..++.+|+..++...+|.++..-|..+.|+..-+..+ ..|+..
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~spdlT--------------- 102 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-ESPDLT--------------- 102 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCCc---------------
Confidence 4567778888999999999999999999999999999999999999999999887665 344322
Q ss_pred CCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc-CcH-HHHHHHHHHHHHhCCHHHHHH
Q 002100 762 PESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI-KHT-RAHQGLARVYHLKNQRKAAYD 839 (967)
Q Consensus 762 ~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~-~~~-~a~~~la~~~~~~g~~~~A~~ 839 (967)
..++..++..||.-|+..|-++.|...|...++. ... .++..|..+|....+|++|++
T Consensus 103 --------------------~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId 162 (389)
T COG2956 103 --------------------FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAID 162 (389)
T ss_pred --------------------hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 1134468899999999999999999999999984 333 399999999999999999999
Q ss_pred HHHHHHHHccCC-----HHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002100 840 EMTKLIEKARNN-----ASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIA 910 (967)
Q Consensus 840 ~~~~al~~~p~~-----~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~ 910 (967)
.-++..+..+.. +..|..++.. .+.+.|+..+.+|++.+|+.+.+-..+|.+++..|+|++|++.++.+++
T Consensus 163 ~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 163 VAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred HHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence 999999988764 3345555532 7899999999999999999999999999999999999999999999999
Q ss_pred cCCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhh
Q 002100 911 FKPD--LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATER 961 (967)
Q Consensus 911 ~~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~ 961 (967)
.+|+ ++++..+..+|.++|+.++.+..+.++.+..++..-.+-++..+++.
T Consensus 243 Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~ 295 (389)
T COG2956 243 QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQ 295 (389)
T ss_pred hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHh
Confidence 9999 56899999999999999999999999999999877666666555443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-13 Score=154.67 Aligned_cols=315 Identities=14% Similarity=0.013 Sum_probs=224.4
Q ss_pred CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhh
Q 002100 549 DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S---PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYG 624 (967)
Q Consensus 549 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 624 (967)
+|+.+.+|..+|..+...++.+.|.+.+.++....| + .+.....+.++...|++++|...++++++.+|++..++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~- 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL- 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH-
Confidence 799999999999999999999999999999888877 3 45788889999999999999999999999999998666
Q ss_pred hhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 625 QLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLA 704 (967)
Q Consensus 625 ~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~a 704 (967)
.. +..+...+.+..+ . ..+...+......+|........+|.++...|++++|+..++++
T Consensus 81 -----~~-~~~~~~~~~~~~~------------~--~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 81 -----KL-HLGAFGLGDFSGM------------R--DHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred -----HH-hHHHHHhcccccC------------c--hhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 3333333333222 0 01123333334566777777888899999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCc
Q 002100 705 RNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLR 784 (967)
Q Consensus 705 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~ 784 (967)
++.+|+++.++..+|.+++..|++++|+..+++++...|... ..
T Consensus 141 l~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~------------------------------------~~ 184 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS------------------------------------ML 184 (355)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc------------------------------------ch
Confidence 999999999999999999999999999999999998776321 01
Q ss_pred hHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--HH-HHH----HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHH
Q 002100 785 KGQALNNLGSVYVDCEKLDLAADCYMNALNIKH--TR-AHQ----GLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEK 857 (967)
Q Consensus 785 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~-a~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 857 (967)
....+..+|.++...|++++|+..|++++...+ .. ... .+...+...|....+..+ +.+...
T Consensus 185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~---------- 253 (355)
T cd05804 185 RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADY---------- 253 (355)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHH----------
Confidence 123567789999999999999999999876443 11 111 111122222221111111 111110
Q ss_pred HHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----------hHHHHHHHHHHHH
Q 002100 858 RSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD----------LQLLHLRAAFHDS 927 (967)
Q Consensus 858 ~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~----------~~~~~~~a~~~~~ 927 (967)
...... .+........++.++...|+.++|...++........ ......+|.++..
T Consensus 254 -------------~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 254 -------------AAWHFP-DHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred -------------HHhhcC-cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 000000 0112223335788888999999999999887653211 2366778999999
Q ss_pred cCChHHHHHHHHHHHhcC
Q 002100 928 MGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 928 ~g~~~~A~~~~~~al~~~ 945 (967)
.|++++|++.+..++.+.
T Consensus 320 ~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 320 EGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999999999999999765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-14 Score=153.85 Aligned_cols=259 Identities=14% Similarity=0.141 Sum_probs=199.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCchHHhhhhhhhhhH
Q 002100 555 PYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE-DYDGALRDVRALLTLDPSYMMFYGQLHGDNLV 632 (967)
Q Consensus 555 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 632 (967)
++-.+-.++...+++++|+..++++|.++| +..++..++.++..++ ++++|+..+.++++.+|++..++ +.+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW------~~R 112 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIW------HHR 112 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHh------HHH
Confidence 343344456667899999999999999999 8999999999999998 68999999999999999999999 556
Q ss_pred hhhHHHhhch--hhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 002100 633 ETLQPLVQQW--SQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS 710 (967)
Q Consensus 633 ~~l~~~~~~~--~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~ 710 (967)
+.+....++. ..+ +..+.++++.+|++..+|..++.++...|++++|+..+.++++.+|.
T Consensus 113 ~~~l~~l~~~~~~~e------------------l~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~ 174 (320)
T PLN02789 113 RWLAEKLGPDAANKE------------------LEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR 174 (320)
T ss_pred HHHHHHcCchhhHHH------------------HHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence 6666665542 233 88999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHc---CCh----HHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCC
Q 002100 711 EHEKLVYEGWILYDT---GHR----EEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGL 783 (967)
Q Consensus 711 ~~~a~~~lg~~~~~~---g~~----~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~ 783 (967)
+..+|.+++.++... |.+ ++++.+..++|.++|++.
T Consensus 175 N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~------------------------------------- 217 (320)
T PLN02789 175 NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNE------------------------------------- 217 (320)
T ss_pred chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCc-------------------------------------
Confidence 999999999998876 333 478888889999999776
Q ss_pred chHHHHHHhHHHHHh----cccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHH
Q 002100 784 RKGQALNNLGSVYVD----CEKLDLAADCYMNALNIK--HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEK 857 (967)
Q Consensus 784 ~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 857 (967)
.+|+.++.++.. .++..+|+..+.+++..+ ...++..|+.+|....+.. ..++..++..
T Consensus 218 ---SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~---~~~~~~~~~~--------- 282 (320)
T PLN02789 218 ---SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPT---AEFRDTVDTL--------- 282 (320)
T ss_pred ---CHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccc---hhhhhhhhcc---------
Confidence 788888888877 456678999999988844 4458888999887532111 0111111000
Q ss_pred HHccCChHHHHHHHHHhhccCCCCchHHHHHH
Q 002100 858 RSEYCDRDMAKSDLSMATQLDPMRTYPYRYRA 889 (967)
Q Consensus 858 ~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la 889 (967)
-+.....++|...+...-+.||-+...|..+.
T Consensus 283 ~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~~~ 314 (320)
T PLN02789 283 AEELSDSTLAQAVCSELEVADPMRRNYWAWRK 314 (320)
T ss_pred ccccccHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 00112345666666666566776666665554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.6e-12 Score=137.08 Aligned_cols=432 Identities=18% Similarity=0.098 Sum_probs=264.2
Q ss_pred HHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHh
Q 002100 466 VMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTA 545 (967)
Q Consensus 466 ~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~a 545 (967)
.+...++|++|.+.-.+.+...|......-.. -.+......| ++|+...++-
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cK-------------------------vValIq~~ky---~~ALk~ikk~ 72 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIVPDDEDAIRCK-------------------------VVALIQLDKY---EDALKLIKKN 72 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcCCCcHhhHhhh-------------------------HhhhhhhhHH---HHHHHHHHhc
Confidence 35567899999999999998866433322111 1233344455 6666333322
Q ss_pred HhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhh
Q 002100 546 TELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYG 624 (967)
Q Consensus 546 l~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 624 (967)
....-.+. ..+..|-|.+++++.++|+..++ ..++ +...+.++|.+++.+|+|++|+..|+.+++-+.++.....
T Consensus 73 ~~~~~~~~-~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~ 148 (652)
T KOG2376|consen 73 GALLVINS-FFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEER 148 (652)
T ss_pred chhhhcch-hhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 22121222 22789999999999999999999 5666 5668999999999999999999999999988777666552
Q ss_pred hhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002100 625 QLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG-KSLLRFRQSLLLLRLNSQKAAMRSLRL 703 (967)
Q Consensus 625 ~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~l~~ 703 (967)
+. .+.+...... .. ..+.+...|. ....+|+.+-++...|+|.+|++.+++
T Consensus 149 r~---nl~a~~a~l~------------------------~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~k 200 (652)
T KOG2376|consen 149 RA---NLLAVAAALQ------------------------VQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEK 200 (652)
T ss_pred HH---HHHHHHHhhh------------------------HH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 21 1111111110 11 2333444454 456889999999999999999999999
Q ss_pred HHhc--------CCc--h-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH----HhhhcCCCCC-
Q 002100 704 ARNY--------STS--E-----HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY----ALADSSLNPE- 763 (967)
Q Consensus 704 al~~--------~p~--~-----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~----~la~~~~~~~- 763 (967)
++++ +.+ + ......++.++..+|+.++|...|...+..+|-++......- ++.....-.+
T Consensus 201 A~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~ 280 (652)
T KOG2376|consen 201 ALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDG 280 (652)
T ss_pred HHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCch
Confidence 9432 111 1 124667899999999999999999999999885542221111 1111110001
Q ss_pred -----chHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhCCHHH
Q 002100 764 -----SSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKNQRKA 836 (967)
Q Consensus 764 -----~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~ 836 (967)
.-.....+.+..+.... ...+...+.|.+...+..+.-+.+.+.....-...|.. -....+....+...+.+
T Consensus 281 ~~l~~k~~~~~~l~~~~l~~Ls-~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~k 359 (652)
T KOG2376|consen 281 DLLKSKKSQVFKLAEFLLSKLS-KKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKK 359 (652)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhh
Confidence 11111111121111111 11233456666666666666666555443332222222 11112222233336888
Q ss_pred HHHHHHHHHHHccCC-HHHHHHHHc----cCChHHHHHHHH--------HhhccCCCCchHHHHHHHHHHhCCCHHHHHH
Q 002100 837 AYDEMTKLIEKARNN-ASAYEKRSE----YCDRDMAKSDLS--------MATQLDPMRTYPYRYRAAVLMDDHKEAEAIA 903 (967)
Q Consensus 837 A~~~~~~al~~~p~~-~~~~~~~~~----~~~~~~A~~~l~--------~al~l~p~~~~~~~~la~~~~~~g~~~eAi~ 903 (967)
|.+.+...-+.+|.+ ..+...+.. .|+++.|+..+. ...+.. ..+.+...+-..+.+.++.+-|..
T Consensus 360 a~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~ 438 (652)
T KOG2376|consen 360 AIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASA 438 (652)
T ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHH
Confidence 888888888888876 444444443 288888888888 222221 223333344456666666666666
Q ss_pred HHHHHHhcC-------CCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 002100 904 ELSRAIAFK-------PDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 904 ~~~kal~~~-------p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~ 959 (967)
.+.+|+... +.. ..+...+.+..+-|+-++|...+++.+..+|++.+++.-+--+.
T Consensus 439 vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 439 VLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAY 502 (652)
T ss_pred HHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 666666432 221 25556788888889999999999999999999998876544333
|
|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.1e-16 Score=171.85 Aligned_cols=141 Identities=19% Similarity=0.311 Sum_probs=123.5
Q ss_pred CCcccEEEEE-cCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc-CCCCC----CCCH
Q 002100 253 DEDWDMSFCI-GNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR-TKMLD----SFDP 326 (967)
Q Consensus 253 ~~~~Dv~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y-t~~~~----~~~~ 326 (967)
++.-|+.+++ +|+.|+||||+|++|+.||..||..-|.|+..-.+.... +..+.|+.||+|+| +++.. ....
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p--~~~e~m~ivLdylYs~d~~~~~k~~~~~ 785 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSP--LTVEHMSIVLDYLYSDDKVELFKDLKES 785 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCc--chHHHHHHHHHHHHccchHHHHhccchh
Confidence 4555666655 888999999999999999999999999999887776654 88999999999999 55553 2345
Q ss_pred HHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhhcCCch
Q 002100 327 RLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNP 396 (967)
Q Consensus 327 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~l~~~ 396 (967)
+.+.++|..||.|-+.+|++.|+..|.+.++ ..++..++++|.+|++++|...|++||+.|+...+...
T Consensus 786 dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~-lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Lear 854 (1267)
T KOG0783|consen 786 DFMFEILSIADQLLILELKSICEQSLLRKLN-LKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEAR 854 (1267)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhc-ccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhc
Confidence 6789999999999999999999999999999 99999999999999999999999999999998655433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-13 Score=134.78 Aligned_cols=202 Identities=15% Similarity=0.058 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHH
Q 002100 588 CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVV 667 (967)
Q Consensus 588 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~ 667 (967)
+...+|.-|++.|++..|...++++|+.+|++..++ ..++.+|...++-+.| -+.|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~------~~~A~~Yq~~Ge~~~A------------------~e~Y 92 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAH------LVRAHYYQKLGENDLA------------------DESY 92 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH------HHHHHHHHHcCChhhH------------------HHHH
Confidence 455555666666666666666666666666665555 4445555555555555 4555
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch
Q 002100 668 HHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY--STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF 745 (967)
Q Consensus 668 ~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 745 (967)
++++.++|++..++.+.|..+..+|+|++|+..|++|+.. .+....++.++|.|-.+.|+++.|...|+++++++|++
T Consensus 93 rkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 93 RKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred HHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence 5555566666666666777777777777777777777763 35556677788888888888888888888888888766
Q ss_pred HHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH--HHHHH
Q 002100 746 EAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT--RAHQG 823 (967)
Q Consensus 746 ~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--~a~~~ 823 (967)
+ .+...++..++..|+|..|..++++....... ..+..
T Consensus 173 ~----------------------------------------~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L 212 (250)
T COG3063 173 P----------------------------------------PALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLL 212 (250)
T ss_pred C----------------------------------------hHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHH
Confidence 5 55666777777778888887777777663322 24555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHccCCHH
Q 002100 824 LARVYHLKNQRKAAYDEMTKLIEKARNNAS 853 (967)
Q Consensus 824 la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 853 (967)
..++....|+.+.|.++=.++....|....
T Consensus 213 ~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 213 GIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 556777788888888877777777776543
|
|
| >smart00225 BTB Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-15 Score=131.57 Aligned_cols=90 Identities=27% Similarity=0.441 Sum_probs=85.6
Q ss_pred cEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHHHHHHHHh
Q 002100 257 DMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVLELLSFA 336 (967)
Q Consensus 257 Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ll~~A 336 (967)
||+|.++|+.|++||.+|+++|+||+.||.+++.++....|.+++ +++++|+.+++|+||+++ .++..++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~--~~~~~f~~~l~~ly~~~~-~~~~~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDD--VSPEDFRALLEFLYTGKL-DLPEENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecC--CCHHHHHHHHHeecCcee-ecCHHHHHHHHHHH
Confidence 799999999999999999999999999999998888788999976 999999999999999999 88888999999999
Q ss_pred chhChHHHHHHHH
Q 002100 337 NRFCCEELKSACD 349 (967)
Q Consensus 337 ~~~~~~~l~~~c~ 349 (967)
++|+++.|++.|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999999984
|
Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.6e-13 Score=150.52 Aligned_cols=241 Identities=17% Similarity=0.094 Sum_probs=195.6
Q ss_pred hhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc--------CCCChHHHHHHHHHHHHhcCHHHHHHHH
Q 002100 630 NLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN--------DPGKSLLRFRQSLLLLRLNSQKAAMRSL 701 (967)
Q Consensus 630 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~--------~p~~~~~~~~~g~~~~~~g~~~~A~~~l 701 (967)
.+++..|...++|++| ...+.++++. .|.-......+|.+|..++++.+|+..|
T Consensus 203 ~~La~~y~~~g~~e~A------------------~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly 264 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKA------------------EPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLY 264 (508)
T ss_pred HHHHHHHHHhccHHHH------------------HHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 6689999999999999 6666666665 4554555567999999999999999999
Q ss_pred HHHHhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHH
Q 002100 702 RLARNY--------STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLE 773 (967)
Q Consensus 702 ~~al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le 773 (967)
++|+.+ +|....++.+||.+|...|++++|..++++|+++....
T Consensus 265 ~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~---------------------------- 316 (508)
T KOG1840|consen 265 EEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL---------------------------- 316 (508)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh----------------------------
Confidence 999875 45667789999999999999999999999999765520
Q ss_pred HHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc-------cCcH---HHHHHHHHHHHHhCCHHHHHHHHHH
Q 002100 774 EALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN-------IKHT---RAHQGLARVYHLKNQRKAAYDEMTK 843 (967)
Q Consensus 774 ~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-------~~~~---~a~~~la~~~~~~g~~~~A~~~~~~ 843 (967)
.....+..+..+.+++.++..++++++|+.+|+++++ .++. ..+.+||.+|..+|++++|.+.|++
T Consensus 317 ----~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 317 ----LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred ----hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 1122344557889999999999999999999999987 2221 2788899999999999999999999
Q ss_pred HHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CC----h
Q 002100 844 LIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFK----PD----L 915 (967)
Q Consensus 844 al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~----p~----~ 915 (967)
+|.+.... --..++....++..+|..|.+.+++.+|...|..++.+. |+ .
T Consensus 393 ai~~~~~~----------------------~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~ 450 (508)
T KOG1840|consen 393 AIQILREL----------------------LGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVT 450 (508)
T ss_pred HHHHHHhc----------------------ccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchH
Confidence 99865420 011234456778889999999999999999999988653 33 1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 916 QLLHLRAAFHDSMGDHLHTQRDCEAAL 942 (967)
Q Consensus 916 ~~~~~~a~~~~~~g~~~~A~~~~~~al 942 (967)
..+.++|.+|..+|++++|.+..++++
T Consensus 451 ~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 451 YTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 388899999999999999999999998
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-13 Score=151.59 Aligned_cols=254 Identities=18% Similarity=0.187 Sum_probs=198.4
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhcc--------CCC-hhHHHHHHHHHHHhcCHHHHHHHHHHHHHh---
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGF--------KVS-PDCLELRAWISIALEDYDGALRDVRALLTL--- 615 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l--- 615 (967)
.+|....+...+|..|..+|+|+.|+..+++++.+ .|. ......+|.+|..++++++|+..|++++++
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45777778888999999999999999999999988 443 445556999999999999999999999987
Q ss_pred --CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc-CCCChHHHHHHHHHHHHhc
Q 002100 616 --DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN-DPGKSLLRFRQSLLLLRLN 692 (967)
Q Consensus 616 --~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~-~p~~~~~~~~~g~~~~~~g 692 (967)
.++++..-. ...+++.+|...++|.+|..+. ..|+..+.+.... .|.-...+..++.++..++
T Consensus 274 ~~G~~h~~va~---~l~nLa~ly~~~GKf~EA~~~~-----------e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~ 339 (508)
T KOG1840|consen 274 VFGEDHPAVAA---TLNNLAVLYYKQGKFAEAEEYC-----------ERALEIYEKLLGASHPEVAAQLSELAAILQSMN 339 (508)
T ss_pred hcCCCCHHHHH---HHHHHHHHHhccCChHHHHHHH-----------HHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc
Confidence 234433321 1277899999999999994221 1234555553222 2444567788999999999
Q ss_pred CHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCc
Q 002100 693 SQKAAMRSLRLARNYS--------TSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPES 764 (967)
Q Consensus 693 ~~~~A~~~l~~al~~~--------p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~ 764 (967)
++++|...+++++++. +.-+..+.++|.+|+.+|++++|...|++++.+.....
T Consensus 340 ~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~------------------ 401 (508)
T KOG1840|consen 340 EYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL------------------ 401 (508)
T ss_pred chhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc------------------
Confidence 9999999999988753 24467788999999999999999999999997765222
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc------cCc---HHHHHHHHHHHHHhCCHH
Q 002100 765 SAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN------IKH---TRAHQGLARVYHLKNQRK 835 (967)
Q Consensus 765 ~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~------~~~---~~a~~~la~~~~~~g~~~ 835 (967)
.......+..++++|..|.+.+++.+|...|.+++. +++ ...+.+||.+|..+|+++
T Consensus 402 --------------~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 402 --------------GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE 467 (508)
T ss_pred --------------cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence 011223346889999999999999999999988876 333 248999999999999999
Q ss_pred HHHHHHHHHHHH
Q 002100 836 AAYDEMTKLIEK 847 (967)
Q Consensus 836 ~A~~~~~~al~~ 847 (967)
+|+++..+++..
T Consensus 468 ~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 468 AAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHHH
Confidence 999999988853
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-12 Score=130.50 Aligned_cols=259 Identities=13% Similarity=0.050 Sum_probs=218.9
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-----ChhHHHHHHHHHHHhcCHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-----SPDCLELRAWISIALEDYDGALRD 608 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~la~~~~~~g~~~~A~~~ 608 (967)
+.++|+..|...++.+|...++...+|..+...|..+.||..-+..+.... ..-++..+|.-|...|-++.|...
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~ 129 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDI 129 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 459999999999999999999999999999999999999998776665332 134888999999999999999999
Q ss_pred HHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCC-----hHHHHH
Q 002100 609 VRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGK-----SLLRFR 683 (967)
Q Consensus 609 ~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~-----~~~~~~ 683 (967)
|..+.+...--..+. ..+-.+|....+|.+| ++...+..+..+.. +..|..
T Consensus 130 f~~L~de~efa~~Al------qqLl~IYQ~treW~KA------------------Id~A~~L~k~~~q~~~~eIAqfyCE 185 (389)
T COG2956 130 FNQLVDEGEFAEGAL------QQLLNIYQATREWEKA------------------IDVAERLVKLGGQTYRVEIAQFYCE 185 (389)
T ss_pred HHHHhcchhhhHHHH------HHHHHHHHHhhHHHHH------------------HHHHHHHHHcCCccchhHHHHHHHH
Confidence 998876543333444 6677899999999999 88888888887764 345667
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCC
Q 002100 684 QSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPE 763 (967)
Q Consensus 684 ~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~ 763 (967)
++..+....+.+.|+..+++|++.+|+...+-..+|.+....|+|+.|++.++.+++.+|++.
T Consensus 186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl----------------- 248 (389)
T COG2956 186 LAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL----------------- 248 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH-----------------
Confidence 888888899999999999999999999999999999999999999999999999999999654
Q ss_pred chHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc-HHHHHHHHHHHHHhCCHHHHHHHHH
Q 002100 764 SSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH-TRAHQGLARVYHLKNQRKAAYDEMT 842 (967)
Q Consensus 764 ~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~-~~a~~~la~~~~~~g~~~~A~~~~~ 842 (967)
+.+...|-.+|.+.|+.++.+..+.++.+..+ ..+...++.+-....-.+.|...+.
T Consensus 249 ----------------------~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 249 ----------------------SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred ----------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHH
Confidence 25667778899999999999999999998544 4477778888888888899999999
Q ss_pred HHHHHccCCHHHH
Q 002100 843 KLIEKARNNASAY 855 (967)
Q Consensus 843 ~al~~~p~~~~~~ 855 (967)
+-+...|+--..+
T Consensus 307 ~Ql~r~Pt~~gf~ 319 (389)
T COG2956 307 RQLRRKPTMRGFH 319 (389)
T ss_pred HHHhhCCcHHHHH
Confidence 9999988744333
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-11 Score=123.95 Aligned_cols=417 Identities=12% Similarity=0.043 Sum_probs=226.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhCc--hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChH
Q 002100 459 AFHQLGVVMLEREEYKDAQNWFKAAVEAGH--IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGK 536 (967)
Q Consensus 459 a~~~lG~~~~~~g~y~~A~~~f~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~ 536 (967)
...-+|.+++..|+|++|...|+.+.+.+. ...+..||-+++-.|.+.+|.....++.+.......+....-++ +.+
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl-ndE 137 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL-NDE 137 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-CcH
Confidence 344589999999999999999999988743 56677889999999999999988877755332222222211223 335
Q ss_pred HHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 537 EKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 537 ~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
+-+..|.+-++-. .+--..+|.+++..-.|++||+.|.+++..+| -...-..+|.||+++.-|+-+.+.+.-.+..
T Consensus 138 k~~~~fh~~LqD~---~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 138 KRILTFHSSLQDT---LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHHHhhh---HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 5555555555422 23456678888888899999999999999999 4556678899999999999999999999999
Q ss_pred CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH-----
Q 002100 616 DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR----- 690 (967)
Q Consensus 616 ~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~----- 690 (967)
.|+.+.+. .+.+-....+=+-..| ........ .+-+.. +..+..+.+
T Consensus 215 ~pdStiA~------NLkacn~fRl~ngr~a------------------e~E~k~la-dN~~~~---~~f~~~l~rHNLVv 266 (557)
T KOG3785|consen 215 FPDSTIAK------NLKACNLFRLINGRTA------------------EDEKKELA-DNIDQE---YPFIEYLCRHNLVV 266 (557)
T ss_pred CCCcHHHH------HHHHHHHhhhhccchh------------------HHHHHHHH-hccccc---chhHHHHHHcCeEE
Confidence 99988877 2333222221111111 01111110 000000 000111111
Q ss_pred hcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHH-HHHHHHHhhhcC---CCCCchH
Q 002100 691 LNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEA-FFLKAYALADSS---LNPESSA 766 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-~~~~~~~la~~~---~~~~~~~ 766 (967)
-.+-+.|++.+-..+++-| ++..++...|.++++.++|....+. ++|..+. +.++....+..+ ...+...
T Consensus 267 FrngEgALqVLP~L~~~IP---EARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 267 FRNGEGALQVLPSLMKHIP---EARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred EeCCccHHHhchHHHhhCh---HhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 1223344444444444333 3666666666777777777666553 3443321 123322211111 1111111
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002100 767 YVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKL 844 (967)
Q Consensus 767 ~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 844 (967)
-+.+.+.-......... ....-..++..++-..++++.+.+++..-. .+.....+++|.++...|++.+|.+.|-+.
T Consensus 341 iAqqffqlVG~Sa~ecD-TIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECD-TIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHHhcccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 11111111111100000 000112234444445555555554443332 333345555666666666666655555433
Q ss_pred HHHccCCHHHHHHHHccCChHHHHHHHHHhhccC-CCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh---HHHHH
Q 002100 845 IEKARNNASAYEKRSEYCDRDMAKSDLSMATQLD-PMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL---QLLHL 920 (967)
Q Consensus 845 l~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~-p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~---~~~~~ 920 (967)
...+ .+.......+|.+|...++.+-|-..+- +.+... ..+..
T Consensus 420 ------------------------------s~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLql 466 (557)
T KOG3785|consen 420 ------------------------------SGPEIKNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQL 466 (557)
T ss_pred ------------------------------cChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHH
Confidence 2222 1222333456777777777776655443 333222 24555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002100 921 RAAFHDSMGDHLHTQRDCEAALCLDPN 947 (967)
Q Consensus 921 ~a~~~~~~g~~~~A~~~~~~al~~~P~ 947 (967)
+|....+.+++-=|-+.|...-.+||+
T Consensus 467 IAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 467 IANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 666677777777777777766666665
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-10 Score=121.15 Aligned_cols=385 Identities=10% Similarity=-0.007 Sum_probs=285.1
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
+...|...+++|+..+-.+...|...+.+-++.++...|...+++|+.+-| -...++....+-..+|+...|.+.|++-
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 448999999999999999999999999999999999999999999999999 6778888888889999999999999999
Q ss_pred HHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc
Q 002100 613 LTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLN 692 (967)
Q Consensus 613 l~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g 692 (967)
++..|+...-.. + -..-.....++.| -..|++.+-..|+ ...|...+..-.+.|
T Consensus 168 ~~w~P~eqaW~s-----f--I~fElRykeiera------------------R~IYerfV~~HP~-v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 168 MEWEPDEQAWLS-----F--IKFELRYKEIERA------------------RSIYERFVLVHPK-VSNWIKYARFEEKHG 221 (677)
T ss_pred HcCCCcHHHHHH-----H--HHHHHHhhHHHHH------------------HHHHHHHheeccc-HHHHHHHHHHHHhcC
Confidence 999998543331 1 1111122233344 7888888888876 566777788888999
Q ss_pred CHHHHHHHHHHHHhcCCchhH---HHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHH--HHHHHHhhhcCCCCCchHH
Q 002100 693 SQKAAMRSLRLARNYSTSEHE---KLVYEGWILYDTGHREEALAKAEESISIQRSFEAF--FLKAYALADSSLNPESSAY 767 (967)
Q Consensus 693 ~~~~A~~~l~~al~~~p~~~~---a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~--~~~~~~la~~~~~~~~~~~ 767 (967)
+..-|...|++|++.-.++.. ..+..|.--..+..++.|...|+-|+..-|...+. |.+-...-....+....+.
T Consensus 222 ~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 222 NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 999999999999987665543 23445555667788999999999999988876322 2222244445555555555
Q ss_pred HHHHHHH--HhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH---------HHHHHHHHHH---HHhCC
Q 002100 768 VIQLLEE--ALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT---------RAHQGLARVY---HLKNQ 833 (967)
Q Consensus 768 a~~~le~--~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~---------~a~~~la~~~---~~~g~ 833 (967)
++.--.+ ..+....+|.+-++|+..-.+-...|+.+.-.+.|++|+..-|+ +++..+-.++ ....+
T Consensus 302 ~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred HHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5433221 12233456666678887777777889999999999999983332 1233332222 34678
Q ss_pred HHHHHHHHHHHHHHccC----CHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHH
Q 002100 834 RKAAYDEMTKLIEKARN----NASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAEL 905 (967)
Q Consensus 834 ~~~A~~~~~~al~~~p~----~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~ 905 (967)
.+.+.+.|+.+|++-|. -+..|...+.+ .+...|...+-.|+...|.+-. ....-.+-.+.++++...+.|
T Consensus 382 ~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl-Fk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 382 VERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL-FKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH-HHHHHHHHHHHhhHHHHHHHH
Confidence 88889999999998885 34455555533 6788899999999999887543 233334556678899999999
Q ss_pred HHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 906 SRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 906 ~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
++.|+..|.+ .++...|.+-..+|+.+.|...|+-|+...
T Consensus 461 Ekfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 461 EKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 9999999984 588888999999999999999999887654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-11 Score=135.50 Aligned_cols=307 Identities=12% Similarity=-0.028 Sum_probs=186.0
Q ss_pred chHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchh-----HHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHH
Q 002100 453 SWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIY-----SLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQ 527 (967)
Q Consensus 453 ~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~-----a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~ 527 (967)
+|+.+.++..+|..+...+++++|...+.++.+..+.. .....+.++ .
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~---------------------------~ 54 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSA---------------------------W 54 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHH---------------------------H
Confidence 46678899999999999999999999999888774422 122222222 2
Q ss_pred HHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcH----HHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCH
Q 002100 528 ERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKL----AAAITEINRIIGFKV-SPDCLELRAWISIALEDY 602 (967)
Q Consensus 528 ~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~ 602 (967)
..+. .++|+..++++++.+|++..++.. +..+...+++ ..+.+.+.......| ...++..+|.++...|++
T Consensus 55 ~~g~---~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~ 130 (355)
T cd05804 55 IAGD---LPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY 130 (355)
T ss_pred HcCC---HHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH
Confidence 3332 266777777777777777665554 4444444333 333333333223444 455666777777777777
Q ss_pred HHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChH---
Q 002100 603 DGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSL--- 679 (967)
Q Consensus 603 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~--- 679 (967)
++|+..++++++++|++...+ ..++.++...+++++| +..+.+.+...|..+.
T Consensus 131 ~~A~~~~~~al~~~p~~~~~~------~~la~i~~~~g~~~eA------------------~~~l~~~l~~~~~~~~~~~ 186 (355)
T cd05804 131 DRAEEAARRALELNPDDAWAV------HAVAHVLEMQGRFKEG------------------IAFMESWRDTWDCSSMLRG 186 (355)
T ss_pred HHHHHHHHHHHhhCCCCcHHH------HHHHHHHHHcCCHHHH------------------HHHHHhhhhccCCCcchhH
Confidence 777777777777777776665 5566677777777777 6666666666553322
Q ss_pred -HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--hhHHHH---HHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Q 002100 680 -LRFRQSLLLLRLNSQKAAMRSLRLARNYSTS--EHEKLV---YEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY 753 (967)
Q Consensus 680 -~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~--~~~a~~---~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 753 (967)
.+..++.++...|++++|+..|++++...|. .....+ .+.+.+...|....+... +.+....+
T Consensus 187 ~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~---------- 255 (355)
T cd05804 187 HNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAA---------- 255 (355)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHH----------
Confidence 3456777788888888888888887665552 111111 112222223332222221 11111100
Q ss_pred HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC------c-----HHHHH
Q 002100 754 ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK------H-----TRAHQ 822 (967)
Q Consensus 754 ~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~------~-----~~a~~ 822 (967)
..... +.....-...+.++...|+.++|...++...... . .....
T Consensus 256 -----------------------~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~ 311 (355)
T cd05804 256 -----------------------WHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPL 311 (355)
T ss_pred -----------------------hhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHH
Confidence 00000 0111122346777888899999998888766511 1 12567
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 002100 823 GLARVYHLKNQRKAAYDEMTKLIEKAR 849 (967)
Q Consensus 823 ~la~~~~~~g~~~~A~~~~~~al~~~p 849 (967)
..|.+++.+|++++|.+.+..++....
T Consensus 312 l~A~~~~~~g~~~~A~~~L~~al~~a~ 338 (355)
T cd05804 312 AEALYAFAEGNYATALELLGPVRDDLA 338 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 788899999999999999999998653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-10 Score=126.56 Aligned_cols=228 Identities=18% Similarity=0.181 Sum_probs=161.6
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALL 613 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al 613 (967)
++++|....++.+...|++..+....-.++...++|++|+...++-..........+..|.|+++++..++|+..++
T Consensus 27 e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~--- 103 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK--- 103 (652)
T ss_pred HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---
Confidence 55999999999999999999999999999999999999996554433222222333789999999999999999998
Q ss_pred HhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcC
Q 002100 614 TLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNS 693 (967)
Q Consensus 614 ~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~ 693 (967)
..++.+.... .+.+.+.+.+++|++| +..|+..++.+.++...-.+...+-...
T Consensus 104 ~~~~~~~~ll------~L~AQvlYrl~~ydea------------------ldiY~~L~kn~~dd~d~~~r~nl~a~~a-- 157 (652)
T KOG2376|consen 104 GLDRLDDKLL------ELRAQVLYRLERYDEA------------------LDIYQHLAKNNSDDQDEERRANLLAVAA-- 157 (652)
T ss_pred cccccchHHH------HHHHHHHHHHhhHHHH------------------HHHHHHHHhcCCchHHHHHHHHHHHHHH--
Confidence 4555555555 7789999999999999 9999999888776555444333222111
Q ss_pred HHHHHHH-HHHHHhcCCc-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHH
Q 002100 694 QKAAMRS-LRLARNYSTS-EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQL 771 (967)
Q Consensus 694 ~~~A~~~-l~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~ 771 (967)
+... ..+.....|+ ..+.+++.+-++...|+|.+|++.+++++.+.... +...+.. .+....
T Consensus 158 ---~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-------l~~~d~~--eEeie~---- 221 (652)
T KOG2376|consen 158 ---ALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREK-------LEDEDTN--EEEIEE---- 221 (652)
T ss_pred ---hhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-------hcccccc--hhhHHH----
Confidence 1111 2333444444 56789999999999999999999999997554311 0000110 001111
Q ss_pred HHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH
Q 002100 772 LEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT 818 (967)
Q Consensus 772 le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~ 818 (967)
........++.++..+|+.++|...|...+..++.
T Consensus 222 ------------el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 222 ------------ELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred ------------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 11235667788888889999998888888875443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.9e-12 Score=133.02 Aligned_cols=175 Identities=13% Similarity=0.013 Sum_probs=148.0
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-Ch---hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SP---DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~---~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
.++..+..++.+|..++..|++++|+..|++++...| ++ .+++.+|.++...|++++|+..|+++++.+|+++...
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456778899999999999999999999999999999 54 6889999999999999999999999999999888742
Q ss_pred hhhhhhhhHhhhHHHh--------hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH--------------
Q 002100 624 GQLHGDNLVETLQPLV--------QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR-------------- 681 (967)
Q Consensus 624 ~~~~~~~~~~~l~~~~--------~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~-------------- 681 (967)
.. .+.++.++... +++++| +..+.+++..+|.+...+
T Consensus 108 ~a---~~~~g~~~~~~~~~~~~~~~~~~~A------------------~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~ 166 (235)
T TIGR03302 108 YA---YYLRGLSNYNQIDRVDRDQTAAREA------------------FEAFQELIRRYPNSEYAPDAKKRMDYLRNRLA 166 (235)
T ss_pred HH---HHHHHHHHHHhcccccCCHHHHHHH------------------HHHHHHHHHHCCCChhHHHHHHHHHHHHHHHH
Confidence 11 16667777654 556666 899999999999876432
Q ss_pred ---HHHHHHHHHhcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 682 ---FRQSLLLLRLNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 682 ---~~~g~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
+.+|.+|...|++.+|+..++++++..|+. +++++.+|.++..+|++++|...++......|
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356888999999999999999999997754 58999999999999999999998888765544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.1e-12 Score=132.93 Aligned_cols=199 Identities=14% Similarity=0.087 Sum_probs=131.5
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchh---HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Q 002100 675 PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEH---EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLK 751 (967)
Q Consensus 675 p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~---~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 751 (967)
+..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++.+|++.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----- 104 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP----- 104 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC-----
Confidence 34445556666666666666666666666666655543 3555566666666666666666666665555332
Q ss_pred HHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 002100 752 AYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLK 831 (967)
Q Consensus 752 ~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~ 831 (967)
....+++.+|.++... ++.++...
T Consensus 105 --------------------------------~~~~a~~~~g~~~~~~------------------------~~~~~~~~ 128 (235)
T TIGR03302 105 --------------------------------DADYAYYLRGLSNYNQ------------------------IDRVDRDQ 128 (235)
T ss_pred --------------------------------chHHHHHHHHHHHHHh------------------------cccccCCH
Confidence 1123455555554332 11123334
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 002100 832 NQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAF 911 (967)
Q Consensus 832 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~ 911 (967)
|++++|++.|+++++.+|++..++..+......... .......+|.+|++.|++.+|+..|+++++.
T Consensus 129 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~-------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 129 TAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR-------------LAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred HHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 789999999999999999887665444322111111 1123457899999999999999999999999
Q ss_pred CCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002100 912 KPD----LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPN 947 (967)
Q Consensus 912 ~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~ 947 (967)
.|+ .++++.+|.++..+|++++|...++......|+
T Consensus 196 ~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 196 YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 876 258999999999999999999998888777663
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.3e-10 Score=127.71 Aligned_cols=298 Identities=12% Similarity=0.052 Sum_probs=190.8
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhC--chhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCCh
Q 002100 458 LAFHQLGVVMLEREEYKDAQNWFKAAVEAG--HIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSG 535 (967)
Q Consensus 458 ~a~~~lG~~~~~~g~y~~A~~~f~~al~~~--~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~ 535 (967)
..+.....++.+.|++++|++.+++....- .....-..|.++.+.|+.
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~------------------------------ 54 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRK------------------------------ 54 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCH------------------------------
Confidence 345556677888888888888887765542 233333444444444433
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhc-----CcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHH-
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEE-----NKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDV- 609 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~- 609 (967)
++|...|...|+.+|++...|..+..+.... .+.+.-.+.|++.....|...+...+...+..-.+|......|
T Consensus 55 ~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl 134 (517)
T PF12569_consen 55 EEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYL 134 (517)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHH
Confidence 7777888888888888888887777776332 3567778888888888884444444444444444555544444
Q ss_pred HHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHh------------cCCCC
Q 002100 610 RALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLA------------NDPGK 677 (967)
Q Consensus 610 ~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~------------~~p~~ 677 (967)
...+.. .-|..+. .+--+|. +-.+++...++. ..+...++ ..|..
T Consensus 135 ~~~l~K--gvPslF~------~lk~Ly~---d~~K~~~i~~l~------------~~~~~~l~~~~~~~~~~~~~~~~p~ 191 (517)
T PF12569_consen 135 RPQLRK--GVPSLFS------NLKPLYK---DPEKAAIIESLV------------EEYVNSLESNGSFSNGDDEEKEPPS 191 (517)
T ss_pred HHHHhc--CCchHHH------HHHHHHc---ChhHHHHHHHHH------------HHHHHhhcccCCCCCccccccCCch
Confidence 333322 3333331 1112222 122222111111 11111111 11222
Q ss_pred --hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHh
Q 002100 678 --SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYAL 755 (967)
Q Consensus 678 --~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~l 755 (967)
.++++.+++.|...|++++|+..+++++++.|..++.++..|.++...|++++|...++.|-.+|+.+.
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR--------- 262 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR--------- 262 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH---------
Confidence 356788999999999999999999999999999999999999999999999999999999999998554
Q ss_pred hhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--cH---------HHHHHH
Q 002100 756 ADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--HT---------RAHQGL 824 (967)
Q Consensus 756 a~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~---------~a~~~l 824 (967)
..-...+..++..|+.++|.+.+..-...+ +. ......
T Consensus 263 -------------------------------yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~ 311 (517)
T PF12569_consen 263 -------------------------------YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETEC 311 (517)
T ss_pred -------------------------------HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHH
Confidence 233334556667777777777776666533 11 023346
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHc
Q 002100 825 ARVYHLKNQRKAAYDEMTKLIEKA 848 (967)
Q Consensus 825 a~~~~~~g~~~~A~~~~~~al~~~ 848 (967)
|.+|.++|++..|++.|..+.+..
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH
Confidence 777788888888887777666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-09 Score=115.94 Aligned_cols=300 Identities=14% Similarity=0.028 Sum_probs=200.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVET 634 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 634 (967)
...-|..-+..|+|.+|.+...+.-+..+ ...+|..-+....++||++.|-.++.++-+..+++..
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l------------- 153 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL------------- 153 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH-------------
Confidence 33444555555666666666666555555 3334444455555556666665555555554333222
Q ss_pred hHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHH
Q 002100 635 LQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEK 714 (967)
Q Consensus 635 l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a 714 (967)
.....++.++...|+++.|.....++.+..|.++++
T Consensus 154 --------------------------------------------~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~v 189 (400)
T COG3071 154 --------------------------------------------AVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEV 189 (400)
T ss_pred --------------------------------------------HHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHH
Confidence 223345666777888888888888888888888888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHH
Q 002100 715 LVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGS 794 (967)
Q Consensus 715 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~ 794 (967)
+.....+|...|++.+......+.-+-.--... .+.. ++ ..++..+-.
T Consensus 190 lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~-------------------e~~~-le------------~~a~~glL~ 237 (400)
T COG3071 190 LRLALRAYIRLGAWQALLAILPKLRKAGLLSDE-------------------EAAR-LE------------QQAWEGLLQ 237 (400)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHccCCChH-------------------HHHH-HH------------HHHHHHHHH
Confidence 888888888888888888777665533221100 0000 00 012221111
Q ss_pred HHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH--ccCChHHHHHH
Q 002100 795 VYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS--EYCDRDMAKSD 870 (967)
Q Consensus 795 ~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~--~~~~~~~A~~~ 870 (967)
-....+..+.=..+++..-. .+++.....++.-+...|++++|.+....+++..-+.- .....+ ..++...-++.
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l~~~d~~~l~k~ 316 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRLRPGDPEPLIKA 316 (400)
T ss_pred HHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhcCCCCchHHHHH
Confidence 11111111111123322211 33455667778888889999999999999998766533 222223 34888888999
Q ss_pred HHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 871 LSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 871 l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
.++.+...|+++..++.+|.++++.+.+.+|..+|+.+++..|+...+..+|.++.++|+.++|.+.+++++.+.
T Consensus 317 ~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 317 AEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998889999999999999999999999998543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.9e-11 Score=139.61 Aligned_cols=151 Identities=10% Similarity=-0.041 Sum_probs=127.4
Q ss_pred hhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhh
Q 002100 547 ELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQ 625 (967)
Q Consensus 547 ~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 625 (967)
..+|.+..++..+...+...+++++|+..++.+++..| ....|+.+|.++.+.+++.+|... .++...+.+....
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~-- 100 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA-- 100 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh--
Confidence 45788889999999999999999999999999999999 788999999999999998888766 6666555433221
Q ss_pred hhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002100 626 LHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLAR 705 (967)
Q Consensus 626 ~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al 705 (967)
++..+.+.+...+.+..+++.+|.+|-++|++++|...+++++
T Consensus 101 -------------------------------------~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L 143 (906)
T PRK14720 101 -------------------------------------IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV 143 (906)
T ss_pred -------------------------------------HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1555555566677888899999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 706 NYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 706 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
+.+|+++.++.++|..|... +.++|++++.+|+
T Consensus 144 ~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 144 KADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred hcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 99999999999999999988 9999999999988
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.7e-09 Score=107.60 Aligned_cols=402 Identities=12% Similarity=0.022 Sum_probs=255.6
Q ss_pred HhhcCChHHHHHHHHHHHHhCc---hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHH
Q 002100 467 MLEREEYKDAQNWFKAAVEAGH---IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLN 543 (967)
Q Consensus 467 ~~~~g~y~~A~~~f~~al~~~~---~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~ 543 (967)
++.+.||..|+..++-.+..+. .....++|-++++.|++ ++|+..|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY------------------------------~~Al~~Y~ 81 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDY------------------------------EEALNVYT 81 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccH------------------------------HHHHHHHH
Confidence 4567899999999988887644 34455666666666555 55555666
Q ss_pred HhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHH
Q 002100 544 TATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMF 622 (967)
Q Consensus 544 ~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 622 (967)
-+.+.+.-+...+.++|.+++-.|.|.+|...-.++ | ++-...++-.+..+.++-++-.. |..-+.-..++.
T Consensus 82 ~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~-fh~~LqD~~Edq-- 154 (557)
T KOG3785|consen 82 FLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILT-FHSSLQDTLEDQ-- 154 (557)
T ss_pred HHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHH-HHHHHhhhHHHH--
Confidence 555555556677888888888889998887665544 4 56666666666667776555443 333332211211
Q ss_pred hhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHH
Q 002100 623 YGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLR 702 (967)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~ 702 (967)
.-++-+....-.|.+| +.+|.+.+..+|....+-..++.+|.++.-|+-+.+.+.
T Consensus 155 -------LSLAsvhYmR~HYQeA------------------IdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 155 -------LSLASVHYMRMHYQEA------------------IDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred -------HhHHHHHHHHHHHHHH------------------HHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 2223444444556666 888999998888877777788899999999999999888
Q ss_pred HHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHh-cccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCC
Q 002100 703 LARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESIS-IQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSD 781 (967)
Q Consensus 703 ~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~-~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~ 781 (967)
-.++..|+.+-+....+-.++++=+-..|....+.... .+.+++ | ..+.+-....--..-+.+++.|-.+++..
T Consensus 210 vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~--f-~~~l~rHNLVvFrngEgALqVLP~L~~~I-- 284 (557)
T KOG3785|consen 210 VYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP--F-IEYLCRHNLVVFRNGEGALQVLPSLMKHI-- 284 (557)
T ss_pred HHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch--h-HHHHHHcCeEEEeCCccHHHhchHHHhhC--
Confidence 88888998888888888777765444444444333221 122111 1 00100000000011123444444444332
Q ss_pred CCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---cCC-------
Q 002100 782 GLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKA---RNN------- 851 (967)
Q Consensus 782 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~------- 851 (967)
+++-.|+...|..+++..+|+...+. +++-.+.-+..-|.+....|+--...+.++-+-+.. ...
T Consensus 285 ----PEARlNL~iYyL~q~dVqeA~~L~Kd-l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI 359 (557)
T KOG3785|consen 285 ----PEARLNLIIYYLNQNDVQEAISLCKD-LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI 359 (557)
T ss_pred ----hHhhhhheeeecccccHHHHHHHHhh-cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc
Confidence 36778899999999999999987653 445555566667777777777655555554333211 110
Q ss_pred ---HHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH--HHHHHHHHHH
Q 002100 852 ---ASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ--LLHLRAAFHD 926 (967)
Q Consensus 852 ---~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~--~~~~~a~~~~ 926 (967)
...-...-.+.++++-+.++...-..--++....+++|.++...|+|.+|.+.|-+.-...-.+. ....+|.+|.
T Consensus 360 pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 360 PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYI 439 (557)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHH
Confidence 00000011225777877777766666667778889999999999999999999987753332233 4456899999
Q ss_pred HcCChHHHHHHHHH
Q 002100 927 SMGDHLHTQRDCEA 940 (967)
Q Consensus 927 ~~g~~~~A~~~~~~ 940 (967)
..++.+-|-..+-+
T Consensus 440 ~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLK 453 (557)
T ss_pred hcCCchHHHHHHHh
Confidence 99999998766543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.6e-09 Score=111.09 Aligned_cols=305 Identities=16% Similarity=0.107 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCC
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCS 534 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~ 534 (967)
.++.....-|..-+..|+|.+|++...++-+..+......+.. ..+...++ |
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~a-------------------------A~AA~qrg---d 133 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLA-------------------------AEAAQQRG---D 133 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHH-------------------------HHHHHhcc---c
Confidence 3445555677788889999999999998877755333333222 22333444 3
Q ss_pred hHHHHHHHHHhHhhCCCC-chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 535 GKEKMMDLNTATELDPTL-SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
.+.|-.++.++.+..++. ...+..++.++...+++..|.....++++..| ++..+.....+|...|+|.+......+.
T Consensus 134 ~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L 213 (400)
T COG3071 134 EDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL 213 (400)
T ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 377777888888884443 45678899999999999999999999999999 9999999999999999999999888877
Q ss_pred HHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHH-HHHHHHhcCCCChHHHHHHHHHHHHh
Q 002100 613 LTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLA-VVHHMLANDPGKSLLRFRQSLLLLRL 691 (967)
Q Consensus 613 l~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~-~~~~~l~~~p~~~~~~~~~g~~~~~~ 691 (967)
-+..--+..-+.+.. -.. |.-+.+......+...+. .++..-..--.++.+....+.-+.+.
T Consensus 214 ~ka~~l~~~e~~~le-----~~a------------~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 214 RKAGLLSDEEAARLE-----QQA------------WEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHccCCChHHHHHHH-----HHH------------HHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHc
Confidence 665332222111100 000 000001000111101111 11111111112233444455556666
Q ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHH
Q 002100 692 NSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQL 771 (967)
Q Consensus 692 g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~ 771 (967)
|+.++|.+..+.+++..-+.. ....++ ....+++..=++..++.++..|+.+
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p------------------------- 328 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDP------------------------- 328 (400)
T ss_pred CChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCCh-------------------------
Confidence 666666666666665543321 111111 1123444555555555555444333
Q ss_pred HHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002100 772 LEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR-AHQGLARVYHLKNQRKAAYDEMTKLIEK 847 (967)
Q Consensus 772 le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~-a~~~la~~~~~~g~~~~A~~~~~~al~~ 847 (967)
..+..||..++..+.|.+|..+|+.|++..+.. .+..+|.++.++|+..+|.+.++.++-.
T Consensus 329 ---------------~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 ---------------LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ---------------hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 788999999999999999999999999976654 8888999999999999999999988754
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=117.62 Aligned_cols=127 Identities=12% Similarity=-0.024 Sum_probs=111.6
Q ss_pred HHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 002100 538 KMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLD 616 (967)
Q Consensus 538 A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 616 (967)
-...|+++++++|++ ++.+|.++...|++++|+..|++++..+| +..++..+|.++...|++++|+..|++++.++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356788999999885 66789999999999999999999999999 89999999999999999999999999999999
Q ss_pred CCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 002100 617 PSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRL 691 (967)
Q Consensus 617 p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~ 691 (967)
|+++.++ +.++.++...|++++| +..|.++++..|+++..+..++.+...+
T Consensus 89 p~~~~a~------~~lg~~l~~~g~~~eA------------------i~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 89 ASHPEPV------YQTGVCLKMMGEPGLA------------------REAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCCcHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 9999998 7888999999999998 8999999999999888888777765443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.4e-12 Score=126.99 Aligned_cols=105 Identities=21% Similarity=0.224 Sum_probs=99.2
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
++|++|+..|.+||+++|+++..|.++|.+|.+.|.++.|++.++.++.++|.+ .+|..+|.+|..+|++++|++.|++
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 678888888999999999999999999999999999999999999999999995 5999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHhhhhhcC
Q 002100 941 ALCLDPNHTDTLELYDKATERVNEQQ 966 (967)
Q Consensus 941 al~~~P~~~~~l~l~~r~~~~~~~~~ 966 (967)
||+++|++....+-+.+++.+..+++
T Consensus 175 aLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 175 ALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred hhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988776
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.4e-11 Score=115.83 Aligned_cols=126 Identities=12% Similarity=0.075 Sum_probs=110.4
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHH
Q 002100 573 ITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLY 652 (967)
Q Consensus 573 ~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~ 652 (967)
...|+++++++|+. ++.+|.++...|++++|+..|++++..+|.+..++ ..++.++...+++++|
T Consensus 13 ~~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~------~~lg~~~~~~g~~~~A------- 77 (144)
T PRK15359 13 EDILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAH------IALAGTWMMLKEYTTA------- 77 (144)
T ss_pred HHHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH------HHHHHHHHHHhhHHHH-------
Confidence 35788888888843 55789999999999999999999999999999888 7788999999999998
Q ss_pred hhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 002100 653 DRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYD 724 (967)
Q Consensus 653 ~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~ 724 (967)
+..|.++++.+|.++..++++|.++...|++++|+..|+++++..|+++..+.++|.+...
T Consensus 78 -----------~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 78 -----------INFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred -----------HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999988888877654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-09 Score=136.44 Aligned_cols=343 Identities=14% Similarity=0.025 Sum_probs=241.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcc-CC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----chHHhhhhhh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGF-KV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPS-----YMMFYGQLHG 628 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~-~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~-----~~~~~~~~~~ 628 (967)
....+..+...|++..+...+..+-.. .. ++.....+++++...|++++|...+..+...-+. ....... .
T Consensus 377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~--~ 454 (903)
T PRK04841 377 LLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAE--F 454 (903)
T ss_pred HHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHH--H
Confidence 344566677778888766666543111 11 4556678889999999999999999988765322 1111111 1
Q ss_pred hhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh-----HHHHHHHHHHHHhcCHHHHHHHHHH
Q 002100 629 DNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS-----LLRFRQSLLLLRLNSQKAAMRSLRL 703 (967)
Q Consensus 629 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~-----~~~~~~g~~~~~~g~~~~A~~~l~~ 703 (967)
...++.++...+++++| ...+.++++..|... .....+|.++...|++++|...+++
T Consensus 455 ~~~~a~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~ 516 (903)
T PRK04841 455 NALRAQVAINDGDPEEA------------------ERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQ 516 (903)
T ss_pred HHHHHHHHHhCCCHHHH------------------HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 13456677777788777 777777776544322 3456788889999999999999999
Q ss_pred HHhcCCc------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhc
Q 002100 704 ARNYSTS------EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALR 777 (967)
Q Consensus 704 al~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~ 777 (967)
++..... ...++..+|.++...|++++|...+++++.+.....
T Consensus 517 al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~------------------------------- 565 (903)
T PRK04841 517 TEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH------------------------------- 565 (903)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc-------------------------------
Confidence 9865332 124567789999999999999999999986533110
Q ss_pred CCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc----Cc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002100 778 CPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI----KH---TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 778 ~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~----~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
....+.....+..+|.++...|++++|...+.+++.. .+ ..++..+|.++...|++++|...+.++....+.
T Consensus 566 -~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 566 -LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred -cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 0001112234567899999999999999999999872 11 226777999999999999999999999876443
Q ss_pred CH---HHH--------HHHHccCChHHHHHHHHHhhccCCCCchH----HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-
Q 002100 851 NA---SAY--------EKRSEYCDRDMAKSDLSMATQLDPMRTYP----YRYRAAVLMDDHKEAEAIAELSRAIAFKPD- 914 (967)
Q Consensus 851 ~~---~~~--------~~~~~~~~~~~A~~~l~~al~l~p~~~~~----~~~la~~~~~~g~~~eAi~~~~kal~~~p~- 914 (967)
.. ... ......++.+.|...+.......+..... +..+|.++...|++++|+..++++++....
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~ 724 (903)
T PRK04841 645 GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL 724 (903)
T ss_pred ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 21 110 11112378888888887766533332222 467899999999999999999999875322
Q ss_pred ------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchh
Q 002100 915 ------LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTD 950 (967)
Q Consensus 915 ------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~ 950 (967)
..++..+|.++...|+.++|...+++|+++.....-
T Consensus 725 g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 725 RLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 136778999999999999999999999998865433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-07 Score=103.25 Aligned_cols=410 Identities=14% Similarity=0.059 Sum_probs=263.6
Q ss_pred HHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC---ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 002100 541 DLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV---SPDCLELRAWISIALEDYDGALRDVRALLTLDP 617 (967)
Q Consensus 541 ~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 617 (967)
.|++++-.--+-+..|......++.+++...-...|++++..-| ....|-..-......+-.+-++..|++-|+++|
T Consensus 90 c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P 169 (835)
T KOG2047|consen 90 CFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP 169 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH
Confidence 34444443334566677777777777887777777877777777 344555555555666667777777888777777
Q ss_pred CchHHhhhhhhhhhHhhhHHHhhchhhH----------------------hhHHHHHhhhccccc----cchHHHHHHHH
Q 002100 618 SYMMFYGQLHGDNLVETLQPLVQQWSQA----------------------DCWMQLYDRWSSVDD----IGSLAVVHHML 671 (967)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A----------------------~~~~~l~~~~~~~d~----~~al~~~~~~l 671 (967)
....-+.. .....+++++| .-|.++.+..++..+ ...-+.++..+
T Consensus 170 ~~~eeyie---------~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 170 EAREEYIE---------YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI 240 (835)
T ss_pred HHHHHHHH---------HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence 76544411 11222333333 134444443332211 12234455666
Q ss_pred hcCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---hhHH-----HHHHHHHHHHcC-------------ChH
Q 002100 672 ANDPGK-SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS---EHEK-----LVYEGWILYDTG-------------HRE 729 (967)
Q Consensus 672 ~~~p~~-~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~---~~~a-----~~~lg~~~~~~g-------------~~~ 729 (967)
...++. ..+|..+|..|.+.|.++.|...|++++..--. .... .+..-.+...++ +.+
T Consensus 241 ~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~ 320 (835)
T KOG2047|consen 241 RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE 320 (835)
T ss_pred ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH
Confidence 666654 457888999999999999999999999875332 1111 111111111111 344
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHhh-----------hcCCCCCchHHHHHHHHHHhcCCCCC---CchHHHHHHhHHH
Q 002100 730 EALAKAEESISIQRSFEAFFLKAYALA-----------DSSLNPESSAYVIQLLEEALRCPSDG---LRKGQALNNLGSV 795 (967)
Q Consensus 730 eA~~~~~~al~~~p~~~~~~~~~~~la-----------~~~~~~~~~~~a~~~le~~~~~~~~~---~~~~~a~~~lg~~ 795 (967)
-....|+..++..|-.. ....|. ...+..+...+.++.+.++.+..... ......|..+|..
T Consensus 321 ~~~a~~e~lm~rr~~~l----NsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLL----NSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKL 396 (835)
T ss_pred HHHHHHHHHHhccchHH----HHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHH
Confidence 45666777666655211 111111 11122344556667777776654332 3345678899999
Q ss_pred HHhcccHHHHHHHHHHHhccCcH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC------------------C
Q 002100 796 YVDCEKLDLAADCYMNALNIKHT------RAHQGLARVYHLKNQRKAAYDEMTKLIEKARN------------------N 851 (967)
Q Consensus 796 ~~~~g~~~~A~~~~~~Al~~~~~------~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------~ 851 (967)
|...|+.+.|...|++|++..-. .+|..-|..-....+++.|++.++++.....+ .
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence 99999999999999999994322 37888888999999999999999988754222 1
Q ss_pred HHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh---H---HHHHH
Q 002100 852 ASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL---Q---LLHLR 921 (967)
Q Consensus 852 ~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~---~---~~~~~ 921 (967)
..+|..... +|-++.....|++.+++.--.|....+.|..+....-+++|-+.|++-+.+-+-+ + .|...
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 112222222 2788888899999999988889999999999999999999999999999887653 2 23333
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC-ch-hHHHHHHHHHhhhh
Q 002100 922 AAFHDSMGDHLHTQRDCEAALCLDPN-HT-DTLELYDKATERVN 963 (967)
Q Consensus 922 a~~~~~~g~~~~A~~~~~~al~~~P~-~~-~~l~l~~r~~~~~~ 963 (967)
......--+.+.|...|++||+..|. +. .+.-+|.++++..+
T Consensus 557 fi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~G 600 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHG 600 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 33444445789999999999998873 22 23456777776643
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-11 Score=126.22 Aligned_cols=284 Identities=17% Similarity=0.131 Sum_probs=188.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHhccCC-C----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHh
Q 002100 559 RAILLVEENKLAAAITEINRIIGFKV-S----PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVE 633 (967)
Q Consensus 559 la~~~~~~g~~~~A~~~~~~al~~~p-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 633 (967)
-|.-+.+.|++...+..|+.|++... + ..+|..+|..|+-++||++|+++..--|.+.
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltla----------------- 85 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLA----------------- 85 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHH-----------------
Confidence 35566777777777777777777655 2 3356666666666666666665433222110
Q ss_pred hhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----
Q 002100 634 TLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST---- 709 (967)
Q Consensus 634 ~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p---- 709 (967)
+.+...-.....--++|..+--.|.|++|+.++.+-+....
T Consensus 86 -----------------------------------r~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgD 130 (639)
T KOG1130|consen 86 -----------------------------------RLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGD 130 (639)
T ss_pred -----------------------------------HHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhH
Confidence 00110111112234577788888999999988777665432
Q ss_pred --chhHHHHHHHHHHHHcCC-------------hHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHH
Q 002100 710 --SEHEKLVYEGWILYDTGH-------------REEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEE 774 (967)
Q Consensus 710 --~~~~a~~~lg~~~~~~g~-------------~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~ 774 (967)
....+++++|.+|...|+ .+++...++.|++... ....+.
T Consensus 131 rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~-------eNL~l~------------------ 185 (639)
T KOG1130|consen 131 RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM-------ENLELS------------------ 185 (639)
T ss_pred HHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH-------HHHHHH------------------
Confidence 235689999999987764 2344444555442221 111111
Q ss_pred HhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002100 775 ALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH--------TRAHQGLARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 775 ~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--------~~a~~~la~~~~~~g~~~~A~~~~~~al~ 846 (967)
+...+....+.++-+||..|+-+|+|+.|+..-+.-+.+.. ..++.++|.+|.-+|+++.|++.|++.+.
T Consensus 186 --~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 186 --EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred --HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 11122234457899999999999999999998877666322 23899999999999999999999998876
Q ss_pred HccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-------hHHHH
Q 002100 847 KARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-------LQLLH 919 (967)
Q Consensus 847 ~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-------~~~~~ 919 (967)
+.-. + =++.+ .+...+.+|..|.-..++++||.++.+-+.+... ..+++
T Consensus 264 LAie----------l---------g~r~v-----EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Racw 319 (639)
T KOG1130|consen 264 LAIE----------L---------GNRTV-----EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACW 319 (639)
T ss_pred HHHH----------h---------cchhH-----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 4321 1 11111 1344567899999999999999999998776544 23788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 920 LRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 920 ~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
.+|.++-.+|..++|+...++.+++.
T Consensus 320 SLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 320 SLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 89999999999999999988887654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=118.64 Aligned_cols=158 Identities=18% Similarity=0.162 Sum_probs=132.3
Q ss_pred HHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHH
Q 002100 793 GSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAK 868 (967)
Q Consensus 793 g~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~ 868 (967)
+..|+..|+++......++...... -+...++.++++..++++++.+|++..+|..+|.. +++++|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4568888988887655543333211 11126778999999999999999999999999953 9999999
Q ss_pred HHHHHhhccCCCCchHHHHHHHHH-HhCCC--HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 869 SDLSMATQLDPMRTYPYRYRAAVL-MDDHK--EAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 869 ~~l~~al~l~p~~~~~~~~la~~~-~~~g~--~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
..|+++++++|+++.++..+|.++ ...|+ +++|+..++++++.+|+ ..++.++|..++..|++++|+..|++++++
T Consensus 94 ~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 94 LAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999975 67777 59999999999999998 469999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHH
Q 002100 945 DPNHTDTLELYDKAT 959 (967)
Q Consensus 945 ~P~~~~~l~l~~r~~ 959 (967)
.|.+.+-..++..++
T Consensus 174 ~~~~~~r~~~i~~i~ 188 (198)
T PRK10370 174 NSPRVNRTQLVESIN 188 (198)
T ss_pred CCCCccHHHHHHHHH
Confidence 988776666654444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.7e-08 Score=113.29 Aligned_cols=281 Identities=13% Similarity=0.051 Sum_probs=196.1
Q ss_pred chHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHH--HHHHHHHHhcC-----ChHHHH
Q 002100 437 NTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSL--VGVARTKFKRG-----HKYSAY 509 (967)
Q Consensus 437 ~~~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~--~~la~~~~~~g-----~~~~A~ 509 (967)
....+.|+.|.+....-.++...+-..|.++++.|++++|...|...++.+|.... .++..+..... ....-.
T Consensus 18 g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~ 97 (517)
T PF12569_consen 18 GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLL 97 (517)
T ss_pred CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHH
Confidence 34455666666666666777778888999999999999999999999999984433 34444432222 345667
Q ss_pred HHHHHHHhccCcchhHHHHHhhcCCh---H-HHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHh---cc
Q 002100 510 KLMNSLISDYTPVGWMYQERSLYCSG---K-EKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRII---GF 582 (967)
Q Consensus 510 ~~l~~~i~~~~~~g~~~~~~~~y~~~---~-~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~ 582 (967)
.+|.++...||.....-...-.+..+ . .+..++...+. ..-+..+..+-.+|....+..-....+...+ +.
T Consensus 98 ~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~--KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~ 175 (517)
T PF12569_consen 98 ELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR--KGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLES 175 (517)
T ss_pred HHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcc
Confidence 77888877776432221111111111 2 22233333332 2344445555445543333332222222222 11
Q ss_pred -------------CCC--hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhh
Q 002100 583 -------------KVS--PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADC 647 (967)
Q Consensus 583 -------------~p~--~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~ 647 (967)
.|. ..+++.+|+.|...|++++|+..++++|+..|..+..+ ...+.++.+.|++.+|
T Consensus 176 ~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely------~~KarilKh~G~~~~A-- 247 (517)
T PF12569_consen 176 NGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELY------MTKARILKHAGDLKEA-- 247 (517)
T ss_pred cCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHH------HHHHHHHHHCCCHHHH--
Confidence 122 34778999999999999999999999999999999999 8889999999999999
Q ss_pred HHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchh-------HHH--HHH
Q 002100 648 WMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEH-------EKL--VYE 718 (967)
Q Consensus 648 ~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~-------~a~--~~l 718 (967)
...++.+-.+|+.+-.+-...+..+++.|+.++|...+......+.+.. -.| ...
T Consensus 248 ----------------a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~ 311 (517)
T PF12569_consen 248 ----------------AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETEC 311 (517)
T ss_pred ----------------HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999888766552111 123 346
Q ss_pred HHHHHHcCChHHHHHHHHHHHhccc
Q 002100 719 GWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 719 g~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
|.+|.+.|++..|++.|....+...
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8999999999999999998886654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.1e-10 Score=131.52 Aligned_cols=183 Identities=9% Similarity=-0.025 Sum_probs=154.5
Q ss_pred ccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhcccc
Q 002100 581 GFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVD 659 (967)
Q Consensus 581 ~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d 659 (967)
..+| +..++..+...|...+++++|+..++.+++.+|+...++ +..|.++.+.++++++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~y------y~~G~l~~q~~~~~~~-------------- 84 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISAL------YISGILSLSRRPLNDS-------------- 84 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehH------HHHHHHHHhhcchhhh--------------
Confidence 3456 789999999999999999999999999999999999999 8888899998887777
Q ss_pred ccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 660 DIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 660 ~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
..+ .++...+. ..++ .++..+-..+...+++..+++.+|.+|-++|+.++|...|++++
T Consensus 85 ----~lv--~~l~~~~~--------------~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L 143 (906)
T PRK14720 85 ----NLL--NLIDSFSQ--------------NLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV 143 (906)
T ss_pred ----hhh--hhhhhccc--------------ccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 222 44444333 2344 56666666777788888899999999999999999999999999
Q ss_pred hcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH
Q 002100 740 SIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR 819 (967)
Q Consensus 740 ~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 819 (967)
+.+|++. .+++++|..|... ++++|+.++.+|+..
T Consensus 144 ~~D~~n~----------------------------------------~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---- 178 (906)
T PRK14720 144 KADRDNP----------------------------------------EIVKKLATSYEEE-DKEKAITYLKKAIYR---- 178 (906)
T ss_pred hcCcccH----------------------------------------HHHHHHHHHHHHh-hHHHHHHHHHHHHHH----
Confidence 9999777 8999999999999 999999999999764
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHH
Q 002100 820 AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEK 857 (967)
Q Consensus 820 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 857 (967)
+...+++.++.+.+.+.++.+|.+.+.+..
T Consensus 179 --------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~ 208 (906)
T PRK14720 179 --------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLR 208 (906)
T ss_pred --------HHhhhcchHHHHHHHHHHhcCcccchHHHH
Confidence 667779999999999999999987665433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.9e-09 Score=131.31 Aligned_cols=382 Identities=13% Similarity=-0.017 Sum_probs=250.8
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc-hhHHHHHHHHHHhcCChHHHHHHHHHHHh----ccCc----chhH
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH-IYSLVGVARTKFKRGHKYSAYKLMNSLIS----DYTP----VGWM 525 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~-~~a~~~la~~~~~~g~~~~A~~~l~~~i~----~~~~----~g~~ 525 (967)
+....+...+..+...|++.+|..++..+-.... .......+......|+.......+..+-. ..+. .+++
T Consensus 339 ~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~ 418 (903)
T PRK04841 339 ELPELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHH
Confidence 3445566778888899999999886654422211 12223345566677887776666655421 1221 2344
Q ss_pred HHHHhhcCChHHHHHHHHHhHhhCCC---------CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC--C----hhHHH
Q 002100 526 YQERSLYCSGKEKMMDLNTATELDPT---------LSYPYKYRAILLVEENKLAAAITEINRIIGFKV--S----PDCLE 590 (967)
Q Consensus 526 ~~~~~~y~~~~~A~~~~~~al~l~P~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~ 590 (967)
+...+ +.++|...+..+....+. .......++.++...|++++|...+++++...+ + ..+..
T Consensus 419 ~~~~g---~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 419 AQSQH---RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHCC---CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 44444 458999998888765332 123445678888999999999999999988655 2 23567
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHH
Q 002100 591 LRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHM 670 (967)
Q Consensus 591 ~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~ 670 (967)
.+|.++...|++++|...+++++..................++.++...|+++.| ...+.++
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A------------------~~~~~~a 557 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAA------------------YETQEKA 557 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHH------------------HHHHHHH
Confidence 8899999999999999999999987443322221112235667888888999988 4555554
Q ss_pred HhcC--------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----chhHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 671 LAND--------PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST-----SEHEKLVYEGWILYDTGHREEALAKAEE 737 (967)
Q Consensus 671 l~~~--------p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p-----~~~~a~~~lg~~~~~~g~~~eA~~~~~~ 737 (967)
+... +.....+..+|.++...|++++|...+++++.... .....+..+|.++...|++++|...+.+
T Consensus 558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4431 11223455778899999999999999999877532 2345667789999999999999999999
Q ss_pred HHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc
Q 002100 738 SISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH 817 (967)
Q Consensus 738 al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~ 817 (967)
+..+.+.... ... ............+...|+.+.|..++........
T Consensus 638 a~~~~~~~~~-----------------~~~----------------~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 684 (903)
T PRK04841 638 LENLLGNGRY-----------------HSD----------------WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF 684 (903)
T ss_pred HHHHHhcccc-----------------cHh----------------HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC
Confidence 8765431110 000 0000111112444567889999998877665321
Q ss_pred HH------HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHH
Q 002100 818 TR------AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAV 891 (967)
Q Consensus 818 ~~------a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~ 891 (967)
.. .+..+|.++...|++++|...++++++...... .......++..+|.+
T Consensus 685 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g------------------------~~~~~a~~~~~la~a 740 (903)
T PRK04841 685 ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLR------------------------LMSDLNRNLILLNQL 740 (903)
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC------------------------chHHHHHHHHHHHHH
Confidence 11 356799999999999999999999887543210 111223445567777
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCC
Q 002100 892 LMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 892 ~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
+...|+.++|...+.++++....
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHhCc
Confidence 77777777777777777776544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.7e-10 Score=111.49 Aligned_cols=348 Identities=14% Similarity=0.117 Sum_probs=204.2
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
..|++.+..-.+.+|.+-..+..+|-+|+...+|..|-++|++.-...| .....+..|...++.+.+..|+........
T Consensus 27 ~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 27 ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 7777777777777777777777777777777777777777777777777 555566667777777777777766554432
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCC--CChHHHHHHHHHHHHhc
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDP--GKSLLRFRQSLLLLRLN 692 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p--~~~~~~~~~g~~~~~~g 692 (967)
. .....+.. .+.+-+ .++..|..++-. .++.-| +......+.|-+.++.|
T Consensus 107 ~----~~L~~~~l--qLqaAI------------------kYse~Dl~g~rs----LveQlp~en~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 107 N----PALHSRVL--QLQAAI------------------KYSEGDLPGSRS----LVEQLPSENEADGQINLGCLLYKEG 158 (459)
T ss_pred C----HHHHHHHH--HHHHHH------------------hcccccCcchHH----HHHhccCCCccchhccchheeeccc
Confidence 1 11111100 111111 122222223333 333345 34566777888888889
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----cchHHHHHHHHHhhhcCCCCCchHHH
Q 002100 693 SQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQ----RSFEAFFLKAYALADSSLNPESSAYV 768 (967)
Q Consensus 693 ~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~----p~~~~~~~~~~~la~~~~~~~~~~~a 768 (967)
++++|++-|+.+++...-++..-++++.++++.|+++.|+++..+.++.. |...
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElg---------------------- 216 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELG---------------------- 216 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC----------------------
Confidence 99999999999988888888888888999999999998888887766432 2111
Q ss_pred HHHHHHHhcCCCCC--------------CchHHHHHHhHHHHHhcccHHHHHHHHHHHhc-----cCcHHHHHHHHHHHH
Q 002100 769 IQLLEEALRCPSDG--------------LRKGQALNNLGSVYVDCEKLDLAADCYMNALN-----IKHTRAHQGLARVYH 829 (967)
Q Consensus 769 ~~~le~~~~~~~~~--------------~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-----~~~~~a~~~la~~~~ 829 (967)
+-...+. ....++++..+.++++.++++.|.+.+...-- .+|. .+.++|..-
T Consensus 217 -------IGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv-TLHN~Al~n- 287 (459)
T KOG4340|consen 217 -------IGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV-TLHNQALMN- 287 (459)
T ss_pred -------ccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch-hhhHHHHhc-
Confidence 0011111 11235666677888888888888776643211 2222 444555432
Q ss_pred HhCCHHHHHHHHHHHHHHccCCHHHHHHHHc-cC---ChHHHHHHHHHhhccCCCCchH-----HHHHHHHHH-hCCCH-
Q 002100 830 LKNQRKAAYDEMTKLIEKARNNASAYEKRSE-YC---DRDMAKSDLSMATQLDPMRTYP-----YRYRAAVLM-DDHKE- 898 (967)
Q Consensus 830 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-~~---~~~~A~~~l~~al~l~p~~~~~-----~~~la~~~~-~~g~~- 898 (967)
..+++.+..+-++-.++.+|--.+.+.++-. ++ -++.|...+ ..+|+..+. .+++-..++ -.-..
T Consensus 288 ~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL----AEn~~lTyk~L~~Yly~LLdaLIt~qT~pE 363 (459)
T KOG4340|consen 288 MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL----AENAHLTYKFLTPYLYDLLDALITCQTAPE 363 (459)
T ss_pred ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH----hhCcchhHHHhhHHHHHHHHHHHhCCCCHH
Confidence 2356677777778888888855544443331 21 122222221 112221110 111111111 11122
Q ss_pred ------------------------------------HHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 899 ------------------------------------AEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAAL 942 (967)
Q Consensus 899 ------------------------------------~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al 942 (967)
..|++.|++++++. ..++..+|++|+...||..+.+.|++..
T Consensus 364 ea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y--LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 364 EAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY--LPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 23333444444332 2356678999999999999999999988
Q ss_pred hcCCCc
Q 002100 943 CLDPNH 948 (967)
Q Consensus 943 ~~~P~~ 948 (967)
+...+|
T Consensus 442 efC~eh 447 (459)
T KOG4340|consen 442 EFCNDH 447 (459)
T ss_pred hhhccc
Confidence 766544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.9e-11 Score=123.27 Aligned_cols=285 Identities=13% Similarity=0.039 Sum_probs=192.6
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCC----chhHHHHHHHHHhcCcHHHHHHHHH------HHhccCC-ChhHHHH
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTL----SYPYKYRAILLVEENKLAAAITEIN------RIIGFKV-SPDCLEL 591 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~----~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~p-~~~~~~~ 591 (967)
|.-+.+.+.+ ...+..|+.|++.-.++ ...|..+|.+|+..++|++|+++-. +.+...- ....--+
T Consensus 24 GERLck~gdc---raGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 24 GERLCKMGDC---RAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHhccch---hhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 5556666655 99999999999986654 4578899999999999999998643 3333333 5668889
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHH
Q 002100 592 RAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHML 671 (967)
Q Consensus 592 la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l 671 (967)
+|.++-.+|.|++|+.+..+-|.+..+-.+-.....+.|+++.+|...|+...- ...++.
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~----------~~pee~---------- 160 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL----------EAPEEK---------- 160 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC----------CChhhc----------
Confidence 999999999999999999999887666555555555555566665554333222 000000
Q ss_pred hcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch
Q 002100 672 ANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS------EHEKLVYEGWILYDTGHREEALAKAEESISIQRSF 745 (967)
Q Consensus 672 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 745 (967)
...|. .+ ...++.|.+.|..-+++... ...++-++|..|+.+|+|+.|+..-+.-+.+...+
T Consensus 161 g~f~~--ev----------~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef 228 (639)
T KOG1130|consen 161 GAFNA--EV----------TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF 228 (639)
T ss_pred ccccH--HH----------HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh
Confidence 00000 00 11233444555444433222 23467789999999999999999999888776654
Q ss_pred HHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc----cCcH---
Q 002100 746 EAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN----IKHT--- 818 (967)
Q Consensus 746 ~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----~~~~--- 818 (967)
. +++. ...++.|+|.+|.-.|+++.|+++|++.+. ++..
T Consensus 229 G-------------------DrAa---------------eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 229 G-------------------DRAA---------------ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred h-------------------hHHH---------------HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 4 1111 126899999999999999999999998766 3332
Q ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC------HHHHHHHHc----cCChHHHHHHHHHhhc
Q 002100 819 -RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNN------ASAYEKRSE----YCDRDMAKSDLSMATQ 876 (967)
Q Consensus 819 -~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~----~~~~~~A~~~l~~al~ 876 (967)
...+.||..|....++++|+.++.+-+.+.... ..++..+|. +|..++|+...++.++
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 267889999999999999999999887766532 223333332 2555555555554443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-10 Score=115.96 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=102.8
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHH-HHcCC--hHHHHHHHHHHH
Q 002100 663 SLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWIL-YDTGH--REEALAKAEESI 739 (967)
Q Consensus 663 al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~-~~~g~--~~eA~~~~~~al 739 (967)
.+..+.++++.+|+++..|+.+|.+|...|++++|+..|+++++++|+++..+..+|.++ ...|+ +++|.+.+++++
T Consensus 58 ~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al 137 (198)
T PRK10370 58 QLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKAL 137 (198)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 378889999999999999999999999999999999999999999999999999999875 67677 589999999999
Q ss_pred hcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH
Q 002100 740 SIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT 818 (967)
Q Consensus 740 ~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~ 818 (967)
+.+|++. .+++++|..++..|++++|+.+|+++++..++
T Consensus 138 ~~dP~~~----------------------------------------~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 138 ALDANEV----------------------------------------TALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HhCCCCh----------------------------------------hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999766 78899999999999999999999999985554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-06 Score=94.52 Aligned_cols=313 Identities=13% Similarity=0.048 Sum_probs=202.3
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhH--hhHHHHHhhhc-cc----c
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQA--DCWMQLYDRWS-SV----D 659 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A--~~~~~l~~~~~-~~----d 659 (967)
..+..+|..|...|.+++|...|++++..--...++- .++..--+|++. ..-|++.+.++ .. |
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt----------~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~d 318 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFT----------QIFDAYAQFEESCVAAKMELADEESGNEEDDVD 318 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHH----------HHHHHHHHHHHHHHHHHHhhhhhcccChhhhhh
Confidence 3567789999999999999999999997632221111 111111111111 00011100000 00 0
Q ss_pred ccchHHHHH------------HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCch-----hHHHHHHHHH
Q 002100 660 DIGSLAVVH------------HMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARN-YSTSE-----HEKLVYEGWI 721 (967)
Q Consensus 660 ~~~al~~~~------------~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~-~~p~~-----~~a~~~lg~~ 721 (967)
-.-.+..++ -++..+|++..-|..+..+ ..+++.+-+..|..|++ .+|.- ...|..+|..
T Consensus 319 l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 319 LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKL 396 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHH
Confidence 001122222 3455677777766655544 35778888888888875 45543 3568889999
Q ss_pred HHHcCChHHHHHHHHHHHhcccchHHHH-HHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCC---------------Cch
Q 002100 722 LYDTGHREEALAKAEESISIQRSFEAFF-LKAYALADSSLNPESSAYVIQLLEEALRCPSDG---------------LRK 785 (967)
Q Consensus 722 ~~~~g~~~eA~~~~~~al~~~p~~~~~~-~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~---------------~~~ 785 (967)
|...|+.+.|...|+++....-...... ......|+.-+..+..+.+..+++.+...|... ...
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence 9999999999999999987764332222 222355666777778888888888887766542 122
Q ss_pred HHHHHHhHHHHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc--CCHHHHHHHH--
Q 002100 786 GQALNNLGSVYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKAR--NNASAYEKRS-- 859 (967)
Q Consensus 786 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~-- 859 (967)
...|..+++.....|-++.-...|++.++ +..+....+.|..+.....+++|.+.|++.|.+.+ +-.+.|...-
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 34566667777788888888899999888 55667888899999999999999999999988764 4344443322
Q ss_pred ---cc--CChHHHHHHHHHhhccCCCCc--hHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 002100 860 ---EY--CDRDMAKSDLSMATQLDPMRT--YPYRYRAAVLMDDHKEAEAIAELSRAIAF 911 (967)
Q Consensus 860 ---~~--~~~~~A~~~l~~al~l~p~~~--~~~~~la~~~~~~g~~~eAi~~~~kal~~ 911 (967)
.| ...+.|...|++|++..|... ..+...|..-.+-|--..|++.|++|-..
T Consensus 557 fi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 34 467899999999999887322 23444455555557777777777776543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=109.88 Aligned_cols=179 Identities=14% Similarity=0.059 Sum_probs=166.8
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
..+...+-+....+|++..+ ..++..+...|+-+.+.....++....| +.+.+..+|...+..|+|.+|+..++++..
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 55777777888899999999 9999999999999999999999888888 888888899999999999999999999999
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQ 694 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~ 694 (967)
++|++..++ ..++.+|.+.|+++.| -..|.+++++.|.++.+..++|..|.-.|++
T Consensus 129 l~p~d~~~~------~~lgaaldq~Gr~~~A------------------r~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 129 LAPTDWEAW------NLLGAALDQLGRFDEA------------------RRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred cCCCChhhh------hHHHHHHHHccChhHH------------------HHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 999999999 7889999999999999 6889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 695 KAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 695 ~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
+.|...+..+....+.+..+..+++.+....|++++|.....+-+
T Consensus 185 ~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 185 EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 999999999999999999999999999999999999998776543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=109.03 Aligned_cols=123 Identities=16% Similarity=0.106 Sum_probs=102.1
Q ss_pred HHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-
Q 002100 840 EMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD- 914 (967)
Q Consensus 840 ~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~- 914 (967)
.++++++.+|++..+...++. .+++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 455666666666666655553 266667777777777778888899999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 915 LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 915 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
...++.+|.++..+|++++|+..|+++++++|++.....+..++.+..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999888888776643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-09 Score=128.21 Aligned_cols=153 Identities=12% Similarity=0.043 Sum_probs=121.3
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
+..........|.++.+++.+|.+..+.|.+++|...++.+++..|++..++.+++.++.+.+++++|+..+++++..+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p 151 (694)
T PRK15179 72 LPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS 151 (694)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC
Confidence 44455555667888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred chHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHH
Q 002100 744 SFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAH 821 (967)
Q Consensus 744 ~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~ 821 (967)
++. .+++.+|.++.+.|++++|+.+|++++.. ++..++
T Consensus 152 ~~~----------------------------------------~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~ 191 (694)
T PRK15179 152 SSA----------------------------------------REILLEAKSWDEIGQSEQADACFERLSRQHPEFENGY 191 (694)
T ss_pred CCH----------------------------------------HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHH
Confidence 666 67888888888888888888888888863 344688
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHH
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYE 856 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 856 (967)
.++|.++...|+.++|...|+++++...+-...|.
T Consensus 192 ~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 192 VGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 88888888888888888888888877665444433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=118.48 Aligned_cols=101 Identities=21% Similarity=0.256 Sum_probs=94.8
Q ss_pred CcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHH
Q 002100 520 TPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIA 598 (967)
Q Consensus 520 ~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~ 598 (967)
+..|.-..+-++| .+|+..|.+||+++|+++..|.++|.+|.++|.++.|++.++.++.++| ...+|..+|.+|+.
T Consensus 85 K~eGN~~m~~~~Y---~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 85 KNEGNKLMKNKDY---QEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHhhhH---HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 3446666777777 9999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 599 LEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 599 ~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
+|++++|++.|+++|+++|++....
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYK 186 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHH
Confidence 9999999999999999999999776
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-08 Score=101.87 Aligned_cols=175 Identities=14% Similarity=0.108 Sum_probs=129.5
Q ss_pred cccchHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHH--HHHHHHHHhcCChHHHHHH
Q 002100 434 MKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSL--VGVARTKFKRGHKYSAYKL 511 (967)
Q Consensus 434 ~~~~~~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~--~~la~~~~~~g~~~~A~~~ 511 (967)
.+...+.+++.. ..+..+....++..||.+|+...+|..|-+||++.-..-|.++. .+.|...++.+.+..|..+
T Consensus 24 ~ry~DaI~~l~s---~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 24 ARYADAIQLLGS---ELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred hhHHHHHHHHHH---HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 344555555544 33445556667889999999999999999999999999886554 4567888889999999988
Q ss_pred HHHHHhccCcchhHHHHHh--hcC--ChHHHHHHHHHhHhhCC--CCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-
Q 002100 512 MNSLISDYTPVGWMYQERS--LYC--SGKEKMMDLNTATELDP--TLSYPYKYRAILLVEENKLAAAITEINRIIGFKV- 584 (967)
Q Consensus 512 l~~~i~~~~~~g~~~~~~~--~y~--~~~~A~~~~~~al~l~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p- 584 (967)
...+.+.-.-...+.+... .|. |...+. ..++.-| +.+....+.|-+.++.|+|++|++-|+.+++...
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~r----sLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy 176 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSR----SLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY 176 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchH----HHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence 8777664211122222221 232 222222 2233334 5677888999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 585 SPDCLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 585 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
++-.-+.+|.++++.++++.|++....+++.
T Consensus 177 qpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 177 QPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 8888999999999999999999998888765
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.5e-10 Score=130.91 Aligned_cols=155 Identities=12% Similarity=-0.058 Sum_probs=96.4
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
.+++..+.......|.++.+++.+|.+....|++++|...++.++++.| +..+...++.++.+++++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 3444444444445566666666666666666666666666666666666 566666666666666666666666666666
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQ 694 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~ 694 (967)
.+|++..++ ++++.+...+|+|++| +..|++++..+|+.+.++..+|.++...|+.
T Consensus 149 ~~p~~~~~~------~~~a~~l~~~g~~~~A------------------~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 149 GGSSSAREI------LLEAKSWDEIGQSEQA------------------DACFERLSRQHPEFENGYVGWAQSLTRRGAL 204 (694)
T ss_pred cCCCCHHHH------HHHHHHHHHhcchHHH------------------HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 666666666 5556666666666666 5666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhcCCchhHH
Q 002100 695 KAAMRSLRLARNYSTSEHEK 714 (967)
Q Consensus 695 ~~A~~~l~~al~~~p~~~~a 714 (967)
++|...|+++++....-...
T Consensus 205 ~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 205 WRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHHHHhhCcchHH
Confidence 66666666666655443333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.2e-08 Score=95.64 Aligned_cols=214 Identities=16% Similarity=0.091 Sum_probs=151.6
Q ss_pred HHHHhccCcccccchHHHHHHHHHHHhh---hchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHH
Q 002100 424 FLSQIGMEEDMKSNTTVMLLERLVESAT---ESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKF 500 (967)
Q Consensus 424 ~l~~l~~~~~~~~~~~~~ll~~l~~~~~---~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~ 500 (967)
+..|-.. ...+++..+++-..+..-.. ..++....+-++..+.+..++.+-|..|+++....-|.....+ +++
T Consensus 17 ~~~wr~~-~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~--~lk- 92 (289)
T KOG3060|consen 17 MRKWREE-TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVG--KLK- 92 (289)
T ss_pred HHHHHhc-cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHH--HHH-
Confidence 3355432 24455555555555443322 2345556666777788888999999999988776655433333 111
Q ss_pred hcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHh
Q 002100 501 KRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRII 580 (967)
Q Consensus 501 ~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 580 (967)
+..+...+.| ++|++.|+..++.||++..++...-.+...+|+--+||+.+...+
T Consensus 93 ----------------------am~lEa~~~~---~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL 147 (289)
T KOG3060|consen 93 ----------------------AMLLEATGNY---KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYL 147 (289)
T ss_pred ----------------------HHHHHHhhch---hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4455566666 899999999999999999999988888899999999999999999
Q ss_pred ccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhcccc
Q 002100 581 GFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVD 659 (967)
Q Consensus 581 ~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d 659 (967)
+..+ +.++|..++.+|+..|+|++|.-++++.+-..|-++..+.+ ++.+++..+.-+.-
T Consensus 148 ~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~r------lae~~Yt~gg~eN~-------------- 207 (289)
T KOG3060|consen 148 DKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQR------LAEVLYTQGGAENL-------------- 207 (289)
T ss_pred HHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHH------HHHHHHHHhhHHHH--------------
Confidence 9988 89999999999999999999999999999999998888843 34444443332211
Q ss_pred ccchHHHHHHHHhcCCCChHHHHHHHHH
Q 002100 660 DIGSLAVVHHMLANDPGKSLLRFRQSLL 687 (967)
Q Consensus 660 ~~~al~~~~~~l~~~p~~~~~~~~~g~~ 687 (967)
.-+..+|.++++++|.+...++.+..+
T Consensus 208 -~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 208 -ELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred -HHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 223677777787777666666654433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.3e-09 Score=104.27 Aligned_cols=142 Identities=23% Similarity=0.173 Sum_probs=101.9
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
+.+..+....+|.+..+...+|...++.|++.+|+..++++....|+++++|..+|.+|.+.|++++|...|.+++++.|
T Consensus 86 l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~ 165 (257)
T COG5010 86 LAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP 165 (257)
T ss_pred HHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence 44444555555555555555677777777777788888888778888888888888888888888888888888887777
Q ss_pred chHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHH
Q 002100 744 SFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAH 821 (967)
Q Consensus 744 ~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~ 821 (967)
+.+ .+.+|+|..|.-.|+++.|..++..+... .+..+.
T Consensus 166 ~~p----------------------------------------~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~ 205 (257)
T COG5010 166 NEP----------------------------------------SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVR 205 (257)
T ss_pred CCc----------------------------------------hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHH
Confidence 555 67777777777788888887777777662 344577
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLI 845 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al 845 (967)
.+|+.+...+|++.+|.+...+-+
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHhhcCChHHHHhhccccc
Confidence 777777778888777776655433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-09 Score=115.19 Aligned_cols=259 Identities=13% Similarity=0.056 Sum_probs=181.9
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchH
Q 002100 688 LLRLNSQKAAMRSLRLARNYSTS-EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSA 766 (967)
Q Consensus 688 ~~~~g~~~~A~~~l~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~ 766 (967)
++-.|+|..++...+ ....++. ..+....+.+++..+|+++..+......- .|...+.. .++.....+...+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~av~----~la~y~~~~~~~e 83 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQAVR----LLAEYLSSPSDKE 83 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCHHHH----HHHHHHCTSTTHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHHHHH----HHHHHHhCccchH
Confidence 455789999997666 3334443 45667788889999999887776554422 34333221 2222223334455
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002100 767 YVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 767 ~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 846 (967)
.++..+++.+..... ..........|.++...|++++|++.+.+. ++.........++.++++++.|.+.++.+.+
T Consensus 84 ~~l~~l~~~~~~~~~-~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 84 SALEELKELLADQAG-ESNEIVQLLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp CHHHHHHHCCCTS----CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccc-cccHHHHHHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555433222 122334556688899999999999988765 4556677788899999999999999999887
Q ss_pred HccCCHH-----HHHHHHcc-CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHH
Q 002100 847 KARNNAS-----AYEKRSEY-CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLH 919 (967)
Q Consensus 847 ~~p~~~~-----~~~~~~~~-~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~ 919 (967)
.+.+..- +|.....- .++.+|...|+...+..|..+..+..+|.+.+.+|++++|.+.++++++.+|+ ++++.
T Consensus 160 ~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 160 IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 7765332 33332222 57999999999998888888999999999999999999999999999999999 56999
Q ss_pred HHHHHHHHcCCh-HHHHHHHHHHHhcCCCchhHHHHHHH
Q 002100 920 LRAAFHDSMGDH-LHTQRDCEAALCLDPNHTDTLELYDK 957 (967)
Q Consensus 920 ~~a~~~~~~g~~-~~A~~~~~~al~~~P~~~~~l~l~~r 957 (967)
+++.+...+|+. +.+.+.+.+....+|+|+.+.++-.+
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~ 278 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEK 278 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 999999999998 77888999999999999988775543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-08 Score=100.31 Aligned_cols=136 Identities=18% Similarity=0.113 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHH
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAV 666 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~ 666 (967)
..+.....+....|+.+-|..+++++-...|+..... .+.+..+...++|++| +++
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~------~lkam~lEa~~~~~~A------------------~e~ 108 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVG------KLKAMLLEATGNYKEA------------------IEY 108 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHH------HHHHHHHHHhhchhhH------------------HHH
Confidence 3444555556666777777777777766667766665 5566777777777777 677
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 667 VHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 667 ~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
|...++.+|.+..++-+.--+...+|+.-+|++.+...++..++++++|..++.+|...|+|++|.-++++.+-++|.++
T Consensus 109 y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~ 188 (289)
T KOG3060|consen 109 YESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP 188 (289)
T ss_pred HHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence 77777777777777777767777778878888888888888888888888888888888888888888888888888665
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-09 Score=119.50 Aligned_cols=218 Identities=15% Similarity=0.071 Sum_probs=169.2
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 675 PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 675 p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
|........++.++...|....|+..|++. +.|-....+|...|+..+|.....+-++.+|+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~--------- 457 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDP--------- 457 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcc---------
Confidence 444556678899999999999999999874 567777889999999999999888888744422
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCH
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQR 834 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~ 834 (967)
..|..+|++..+..-|++|.+..+... ..+...+|......+++
T Consensus 458 --------------------------------~lyc~LGDv~~d~s~yEkawElsn~~s----arA~r~~~~~~~~~~~f 501 (777)
T KOG1128|consen 458 --------------------------------RLYCLLGDVLHDPSLYEKAWELSNYIS----ARAQRSLALLILSNKDF 501 (777)
T ss_pred --------------------------------hhHHHhhhhccChHHHHHHHHHhhhhh----HHHHHhhccccccchhH
Confidence 466667776666555555555544322 12556666666777888
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002100 835 KAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIA 910 (967)
Q Consensus 835 ~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~ 910 (967)
.++.+.++..++++|-....|+.+|- .++++.|..+|..++.++|++..+|.+++..|++.++..+|-..+.+|++
T Consensus 502 s~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 502 SEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred HHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 88888888888888888888888873 37888888888888888888888888888888888888888888888888
Q ss_pred cCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 911 FKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 911 ~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
.+-++ .++.+.-.+....|.+++|++.|.+.+.+.
T Consensus 582 cn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 582 CNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred cCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 88554 377888888888888888888888887654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-08 Score=110.24 Aligned_cols=159 Identities=21% Similarity=0.154 Sum_probs=141.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCC
Q 002100 805 AADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPM 880 (967)
Q Consensus 805 A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~ 880 (967)
+-..+-+-.++....++++.|..++..|++++|...++.++...|+|++.+..++.. ++..+|.+.+++++.++|+
T Consensus 293 ~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~ 372 (484)
T COG4783 293 AADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN 372 (484)
T ss_pred hHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Confidence 333333333345556999999999999999999999999999999999999999853 9999999999999999999
Q ss_pred CchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 002100 881 RTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 881 ~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~ 959 (967)
.+..+.++|.+|++.|++.+|+..++..+..+|+ +..|..+|..|..+|+..+|...+.+.+.+.-+..+..+.+.+++
T Consensus 373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 569999999999999999999999999999988888888888888
Q ss_pred hhhh
Q 002100 960 ERVN 963 (967)
Q Consensus 960 ~~~~ 963 (967)
++.+
T Consensus 453 ~~~~ 456 (484)
T COG4783 453 QQVK 456 (484)
T ss_pred Hhcc
Confidence 8764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.4e-09 Score=118.62 Aligned_cols=221 Identities=14% Similarity=0.093 Sum_probs=183.5
Q ss_pred CCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhh
Q 002100 550 PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGD 629 (967)
Q Consensus 550 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 629 (967)
|.....-..+|..++..|-..+|+..|++. +.+-....||...|+..+|.....+-++ .|+++..|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~ly------ 460 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLY------ 460 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhH------
Confidence 444455678899999999999999999885 4677778899999999999999999998 55556555
Q ss_pred hhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 002100 630 NLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG-KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYS 708 (967)
Q Consensus 630 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~ 708 (967)
-.++.+... ...|+++.+.... +..+...+|....+.++|.++.++++..++++
T Consensus 461 c~LGDv~~d-------------------------~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n 515 (777)
T KOG1128|consen 461 CLLGDVLHD-------------------------PSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN 515 (777)
T ss_pred HHhhhhccC-------------------------hHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC
Confidence 334444443 4455555554322 23355566777778899999999999999999
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHH
Q 002100 709 TSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQA 788 (967)
Q Consensus 709 p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a 788 (967)
|-....|+.+|.+..+.++++.|.+.|.+.+.++|++. .+
T Consensus 516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~----------------------------------------ea 555 (777)
T KOG1128|consen 516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA----------------------------------------EA 555 (777)
T ss_pred ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch----------------------------------------hh
Confidence 99999999999999999999999999999999999776 89
Q ss_pred HHHhHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 002100 789 LNNLGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKAR 849 (967)
Q Consensus 789 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 849 (967)
|+|++..|...++..+|-..+++|++-+ |...|.|.-.+....|++++|++.|.+.+....
T Consensus 556 WnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 556 WNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred hhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999944 555889999999999999999999999887654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=103.18 Aligned_cols=118 Identities=14% Similarity=0.041 Sum_probs=107.8
Q ss_pred HHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 540 MDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 540 ~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
+.|+++++.+|++..+.+.+|..+...|++++|+..+++++..+| ++.++..+|.++..+|++++|+..+++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 467889999999999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred chHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH
Q 002100 619 YMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR 681 (967)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~ 681 (967)
+...+ +.++.++...+++++| +..++++++.+|++....
T Consensus 84 ~~~~~------~~la~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPY------FHAAECLLALGEPESA------------------LKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHhccccchHH
Confidence 98888 7889999999999999 889999999999876543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.6e-09 Score=110.38 Aligned_cols=250 Identities=12% Similarity=0.024 Sum_probs=174.3
Q ss_pred HHHhhcCChHHHHHHHHHHHHhCc---hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcC----ChHH
Q 002100 465 VVMLEREEYKDAQNWFKAAVEAGH---IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYC----SGKE 537 (967)
Q Consensus 465 ~~~~~~g~y~~A~~~f~~al~~~~---~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~----~~~~ 537 (967)
+-+|-.|+|..++..++ ....++ ......+.|.+..+|+....+..+..-- .+....+ .....|. +.+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~av-~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQAV-RLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCHHH-HHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHHHH-HHHHHHHhCccchHH
Confidence 34667899999998777 223333 4456778899999998776555443321 2222222 1222221 2355
Q ss_pred HHHHHHHhHhhC--CCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 538 KMMDLNTATELD--PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 538 A~~~~~~al~l~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
++..+++.+... +.+.......|.++...|++++|++.+.+. .+.++......+++.+++++.|.+.++..-+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666665554332 234455666778888899999999887654 46888889999999999999999999999888
Q ss_pred CCCchHHhhhhhhhhhHhhhHHHhh--chhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcC
Q 002100 616 DPSYMMFYGQLHGDNLVETLQPLVQ--QWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNS 693 (967)
Q Consensus 616 ~p~~~~~~~~~~~~~~~~~l~~~~~--~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~ 693 (967)
+.+..... ...+.+....| ++.+| ...|+.+.+..+..+.+...++.+++.+|+
T Consensus 161 ~eD~~l~q------La~awv~l~~g~e~~~~A------------------~y~f~El~~~~~~t~~~lng~A~~~l~~~~ 216 (290)
T PF04733_consen 161 DEDSILTQ------LAEAWVNLATGGEKYQDA------------------FYIFEELSDKFGSTPKLLNGLAVCHLQLGH 216 (290)
T ss_dssp SCCHHHHH------HHHHHHHHHHTTTCCCHH------------------HHHHHHHHCCS--SHHHHHHHHHHHHHCT-
T ss_pred CCcHHHHH------HHHHHHHHHhCchhHHHH------------------HHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 87765544 22222332222 34444 889999888888889999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcccchH
Q 002100 694 QKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHR-EEALAKAEESISIQRSFE 746 (967)
Q Consensus 694 ~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~-~eA~~~~~~al~~~p~~~ 746 (967)
|++|...++++++.+|++++++.+++.+...+|+. +.+.+++.+....+|+++
T Consensus 217 ~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 217 YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 99999999999999999999999999999999998 667778888777888766
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-08 Score=96.02 Aligned_cols=220 Identities=16% Similarity=0.133 Sum_probs=151.7
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhh
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDN 630 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 630 (967)
.+..++.+|..|-..|-+.-|.-.|.+++.+.| -++++..+|..+...|+|+.|.+.|...++++|.+.-+. .
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~------l 137 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH------L 137 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHH------h
Confidence 456788999999999999999999999999999 799999999999999999999999999999999988888 7
Q ss_pred hHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHH--HhcCHHHHHHHH-HHHHhc
Q 002100 631 LVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLL--RLNSQKAAMRSL-RLARNY 707 (967)
Q Consensus 631 ~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~--~~g~~~~A~~~l-~~al~~ 707 (967)
++++.....|+|..| ...+.+.-+.+|++|.--. ++|+ ..-++.+|...+ +++...
T Consensus 138 NRgi~~YY~gR~~LA------------------q~d~~~fYQ~D~~DPfR~L---WLYl~E~k~dP~~A~tnL~qR~~~~ 196 (297)
T COG4785 138 NRGIALYYGGRYKLA------------------QDDLLAFYQDDPNDPFRSL---WLYLNEQKLDPKQAKTNLKQRAEKS 196 (297)
T ss_pred ccceeeeecCchHhh------------------HHHHHHHHhcCCCChHHHH---HHHHHHhhCCHHHHHHHHHHHHHhc
Confidence 788888888999888 7777777788888764222 1222 233566666644 344444
Q ss_pred CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHH
Q 002100 708 STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQ 787 (967)
Q Consensus 708 ~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~ 787 (967)
+.+.+. ++. +-+.+|+..+ ...++++.+-..++. . +.+ ...+
T Consensus 197 d~e~WG-~~i---V~~yLgkiS~-e~l~~~~~a~a~~n~--------------------~---~Ae----------~LTE 238 (297)
T COG4785 197 DKEQWG-WNI---VEFYLGKISE-ETLMERLKADATDNT--------------------S---LAE----------HLTE 238 (297)
T ss_pred cHhhhh-HHH---HHHHHhhccH-HHHHHHHHhhccchH--------------------H---HHH----------HHHH
Confidence 433222 111 1122233222 123333332222221 0 001 1226
Q ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhccC------cHHHHHHHHHHHHHhCCHHH
Q 002100 788 ALNNLGSVYVDCEKLDLAADCYMNALNIK------HTRAHQGLARVYHLKNQRKA 836 (967)
Q Consensus 788 a~~~lg~~~~~~g~~~~A~~~~~~Al~~~------~~~a~~~la~~~~~~g~~~~ 836 (967)
+|+.+|..|...|+.++|...|+-|+..+ +..+.+.|+.+...+.+..+
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~l~~ 293 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDDLAE 293 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccchhhh
Confidence 89999999999999999999999998833 44477777777666544443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-07 Score=101.65 Aligned_cols=130 Identities=21% Similarity=0.216 Sum_probs=101.7
Q ss_pred C-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccc
Q 002100 584 V-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIG 662 (967)
Q Consensus 584 p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~ 662 (967)
| ...+++..|..++..|++++|+..++.++...|+|+.++ .+.+.++...++..+|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~------~~~~~i~~~~nk~~~A----------------- 359 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYL------ELAGDILLEANKAKEA----------------- 359 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHH------HHHHHHHHHcCChHHH-----------------
Confidence 5 677788888888888888888888888888888888777 5667777777777777
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 663 SLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEE 737 (967)
Q Consensus 663 al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~ 737 (967)
++.+++++..+|..+.+...+|..|++.|++.+|++.++..+..+|+++..|..++..|..+|+..+|...+-+
T Consensus 360 -~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 360 -IERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred -HHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 77788888888888888888888888888888888888888888888888888888888887776665544433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-08 Score=95.86 Aligned_cols=104 Identities=17% Similarity=0.183 Sum_probs=91.5
Q ss_pred hcC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Q 002100 672 AND-PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFL 750 (967)
Q Consensus 672 ~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 750 (967)
... ++.-...+.+|..+...|++++|.+.|+.....+|.+...|+++|.++..+|++++|+..|.+++.++|+++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp---- 103 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP---- 103 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----
Confidence 345 566667888899999999999999999999999999999999999999999999999999999999998776
Q ss_pred HHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc
Q 002100 751 KAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI 815 (967)
Q Consensus 751 ~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~ 815 (967)
.++.++|.+++..|+.+.|.+.|+.++..
T Consensus 104 ------------------------------------~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 104 ------------------------------------QAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred ------------------------------------hHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78899999999999999999999998883
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-08 Score=96.15 Aligned_cols=98 Identities=15% Similarity=-0.003 Sum_probs=62.3
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
|++++|...|+....++|.+...|+++|.++..+|++++|+..|.+++.++|+ +..+.+.|.+++..|+.+.|++.|+.
T Consensus 49 G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 49 KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444444455555556666667777777777777777777777777777776 45677777777777777777777777
Q ss_pred HHhcCCCchhHHHHHHHHH
Q 002100 941 ALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 941 al~~~P~~~~~l~l~~r~~ 959 (967)
|+...-.+++-..+..|++
T Consensus 129 Ai~~~~~~~~~~~l~~~A~ 147 (157)
T PRK15363 129 VVRICGEVSEHQILRQRAE 147 (157)
T ss_pred HHHHhccChhHHHHHHHHH
Confidence 7766644444444444433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.6e-09 Score=114.93 Aligned_cols=103 Identities=20% Similarity=0.237 Sum_probs=88.2
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
+++++|+..|+++++++|+++.++.++|.+|...|++++|+..++++++++|+ ..+++.+|.++..+|++++|+..|++
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 56677777777777777888888889999999999999999999999999998 45888899999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHhhhhh
Q 002100 941 ALCLDPNHTDTLELYDKATERVNE 964 (967)
Q Consensus 941 al~~~P~~~~~l~l~~r~~~~~~~ 964 (967)
+++++|+++.+...+.++..++..
T Consensus 96 al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 96 GASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999998888888777643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-07 Score=99.12 Aligned_cols=179 Identities=8% Similarity=-0.049 Sum_probs=136.3
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhh
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S---PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLH 627 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 627 (967)
.+..++..|..++..|+|++|++.|++++...| + ..+.+.+|.+|++.+++++|+..+++.++.+|+++.+-..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a-- 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV-- 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH--
Confidence 456688899999999999999999999999999 4 3456899999999999999999999999999998876532
Q ss_pred hhhhHhhhHHHhhchhhHhhHHHHHhhhc--ccc---ccchHHHHHHHHhcCCCChHH-----------------HHHHH
Q 002100 628 GDNLVETLQPLVQQWSQADCWMQLYDRWS--SVD---DIGSLAVVHHMLANDPGKSLL-----------------RFRQS 685 (967)
Q Consensus 628 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~--~~d---~~~al~~~~~~l~~~p~~~~~-----------------~~~~g 685 (967)
.+.++..+...+.- |+.-+.... .-| ...|+..+++.++..|+.... -+..|
T Consensus 109 -~Y~~g~~~~~~~~~-----~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia 182 (243)
T PRK10866 109 -LYMRGLTNMALDDS-----ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVA 182 (243)
T ss_pred -HHHHHHhhhhcchh-----hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 26666654333200 000000000 000 023678899999999986421 12568
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 686 LLLLRLNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEES 738 (967)
Q Consensus 686 ~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~a 738 (967)
..|.+.|.|..|+.-++.+++..|+. .+++..++.+|..+|..++|.......
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 88999999999999999999988874 688999999999999999998876543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-07 Score=98.67 Aligned_cols=200 Identities=11% Similarity=0.035 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHH---HHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEK---LVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a---~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
+..++..|..+...|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|+++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~-------- 103 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-------- 103 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC--------
Confidence 3445555666666666666666666666666655433 25556666666666666666666666665333
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCH
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQR 834 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~ 834 (967)
....+++.+|.++...++- .+..-..++. ....+...
T Consensus 104 -----------------------------~~~~a~Y~~g~~~~~~~~~-----~~~~~~~~~~---------~~rD~~~~ 140 (243)
T PRK10866 104 -----------------------------NIDYVLYMRGLTNMALDDS-----ALQGFFGVDR---------SDRDPQHA 140 (243)
T ss_pred -----------------------------chHHHHHHHHHhhhhcchh-----hhhhccCCCc---------cccCHHHH
Confidence 3335555555543332210 0111000000 01111224
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 835 KAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 835 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
.+|+..|++.++..|+...+-...-. ...+.-....--...|..|.+.|+|..|+.-++.+++..|+
T Consensus 141 ~~A~~~~~~li~~yP~S~ya~~A~~r-------------l~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~ 207 (243)
T PRK10866 141 RAAFRDFSKLVRGYPNSQYTTDATKR-------------LVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPD 207 (243)
T ss_pred HHHHHHHHHHHHHCcCChhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCC
Confidence 57889999999999986544322211 11111111222346788999999999999999999999998
Q ss_pred ----hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 915 ----LQLLHLRAAFHDSMGDHLHTQRDCEAA 941 (967)
Q Consensus 915 ----~~~~~~~a~~~~~~g~~~~A~~~~~~a 941 (967)
.++++.+..+|..+|..++|.......
T Consensus 208 t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 208 TQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred CchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 359999999999999999998776543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-07 Score=91.23 Aligned_cols=197 Identities=17% Similarity=0.119 Sum_probs=144.6
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhh
Q 002100 677 KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALA 756 (967)
Q Consensus 677 ~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la 756 (967)
.+.+++.+|.+|-..|-+.-|.-.|.+++.+.|..+++++++|..+...|+++.|.+.|...++++|.+.
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~---------- 133 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---------- 133 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch----------
Confidence 4567889999999999999999999999999999999999999999999999999999999999999777
Q ss_pred hcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHH-HHHHHhCCHH
Q 002100 757 DSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLA-RVYHLKNQRK 835 (967)
Q Consensus 757 ~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la-~~~~~~g~~~ 835 (967)
.+..|.|..+.--|+|.-|.+.+.+-...++.+.+..|= .+-...-+..
T Consensus 134 ------------------------------Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~ 183 (297)
T COG4785 134 ------------------------------YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPK 183 (297)
T ss_pred ------------------------------HHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHH
Confidence 688899999999999999999998888755444222211 1123344667
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHcc-CChHHHHHHHHHhhccCCCC-------chHHHHHHHHHHhCCCHHHHHHHHHH
Q 002100 836 AAYDEMTKLIEKARNNASAYEKRSEY-CDRDMAKSDLSMATQLDPMR-------TYPYRYRAAVLMDDHKEAEAIAELSR 907 (967)
Q Consensus 836 ~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~A~~~l~~al~l~p~~-------~~~~~~la~~~~~~g~~~eAi~~~~k 907 (967)
+|...+.+--+...+.-+.|..-+.| |+..+ ...++++.+...++ .+++.++|..+...|+.++|...|+-
T Consensus 184 ~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKL 262 (297)
T COG4785 184 QAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKL 262 (297)
T ss_pred HHHHHHHHHHHhccHhhhhHHHHHHHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 77766654444444445555555433 33221 22233333332222 46788888888889999999998888
Q ss_pred HHhcCCC
Q 002100 908 AIAFKPD 914 (967)
Q Consensus 908 al~~~p~ 914 (967)
++..+--
T Consensus 263 aiannVy 269 (297)
T COG4785 263 AVANNVY 269 (297)
T ss_pred HHHHhHH
Confidence 8766543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.9e-08 Score=90.68 Aligned_cols=112 Identities=11% Similarity=0.055 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCH
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKE 898 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~ 898 (967)
++++.+|..+..+|++++|++.|.++++.+|++ |....+++.+|.++...|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~ 55 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS---------------------------TYAPNAHYWLGEAYYAQGKY 55 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------------------------cccHHHHHHHHHHHHhhccH
Confidence 356777788888888888888877777766641 23356788899999999999
Q ss_pred HHHHHHHHHHHhcCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 002100 899 AEAIAELSRAIAFKPD----LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDK 957 (967)
Q Consensus 899 ~eAi~~~~kal~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r 957 (967)
++|+..|++++...|+ +.++..+|.++..+|++++|+..++++++..|+++.+.....|
T Consensus 56 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 118 (119)
T TIGR02795 56 ADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKR 118 (119)
T ss_pred HHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 9999999999998887 3488999999999999999999999999999999988776554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.9e-08 Score=97.76 Aligned_cols=187 Identities=20% Similarity=0.173 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
+..++..|..++..|+|.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..+++.+...|+.+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-------- 76 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-------- 76 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc--------
Confidence 3456666666667777777777777666665543 45666666677777777777777766666666433
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCH
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQR 834 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~ 834 (967)
....+++.+|.++..+..- .+ .....++..
T Consensus 77 -----------------------------~~~~A~Y~~g~~~~~~~~~---------~~------------~~~~D~~~~ 106 (203)
T PF13525_consen 77 -----------------------------KADYALYMLGLSYYKQIPG---------IL------------RSDRDQTST 106 (203)
T ss_dssp -----------------------------THHHHHHHHHHHHHHHHHH---------HH-------------TT---HHH
T ss_pred -----------------------------chhhHHHHHHHHHHHhCcc---------ch------------hcccChHHH
Confidence 3335666666554433100 00 112334456
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 835 KAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 835 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
.+|+..|+..++..|+...+-..... +..++.. ...--+..|..|.+.|++..|+..++.+++..|+
T Consensus 107 ~~A~~~~~~li~~yP~S~y~~~A~~~-------l~~l~~~------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~ 173 (203)
T PF13525_consen 107 RKAIEEFEELIKRYPNSEYAEEAKKR-------LAELRNR------LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPD 173 (203)
T ss_dssp HHHHHHHHHHHHH-TTSTTHHHHHHH-------HHHHHHH------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHCcCchHHHHHHHH-------HHHHHHH------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 78999999999999986544222211 1111111 1223345789999999999999999999999999
Q ss_pred h----HHHHHHHHHHHHcCChHHHH
Q 002100 915 L----QLLHLRAAFHDSMGDHLHTQ 935 (967)
Q Consensus 915 ~----~~~~~~a~~~~~~g~~~~A~ 935 (967)
. +++..++..|.++|..+.|.
T Consensus 174 t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 174 TPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp SHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CchHHHHHHHHHHHHHHhCChHHHH
Confidence 3 48899999999999998554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-06 Score=89.80 Aligned_cols=312 Identities=14% Similarity=0.071 Sum_probs=170.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHh-Cc----hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCC
Q 002100 460 FHQLGVVMLEREEYKDAQNWFKAAVEA-GH----IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCS 534 (967)
Q Consensus 460 ~~~lG~~~~~~g~y~~A~~~f~~al~~-~~----~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~ 534 (967)
....|.-++...++++|+..+.+.+.. +. ...+..+..+...+|.++++...--..|+.+........
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~------- 81 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDF------- 81 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 345677788899999999999998876 22 122223445555566655555444333332211111000
Q ss_pred hHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C-----hhHHHHHHHHHHHhcCHHHHHHH
Q 002100 535 GKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S-----PDCLELRAWISIALEDYDGALRD 608 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~-----~~~~~~la~~~~~~g~~~~A~~~ 608 (967)
...++.+++..+....++.+++.+-+..+.+.. . ......++..+.-++.++++++.
T Consensus 82 -----------------~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Les 144 (518)
T KOG1941|consen 82 -----------------LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALES 144 (518)
T ss_pred -----------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHH
Confidence 113344445555444555555544444444322 1 12344455555555555555555
Q ss_pred HHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC----------Ch
Q 002100 609 VRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG----------KS 678 (967)
Q Consensus 609 ~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~----------~~ 678 (967)
|++++....++.+.........-++.++..++++++| +.+..++.++... ..
T Consensus 145 fe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Ka------------------l~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 145 FEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKA------------------LFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred HHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHH------------------hhhhHhHHHHHHhcCcCchhHHHHH
Confidence 5555554332222221111113344455555555555 2222332222110 12
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYS------TSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKA 752 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~------p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 752 (967)
...+.++..+..+|..-.|.++++++.++. +-....+.-+|.||...|+.+.|...|+.|.........
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gd----- 281 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGD----- 281 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhh-----
Confidence 345678888899999999999999987753 233455677899999999999999999999865442210
Q ss_pred HHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccH-----HHHHHHHHHHhcc----CcH----H
Q 002100 753 YALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKL-----DLAADCYMNALNI----KHT----R 819 (967)
Q Consensus 753 ~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~-----~~A~~~~~~Al~~----~~~----~ 819 (967)
+ .....++...+.+.....-. =.|++.-++++++ +.. .
T Consensus 282 --------------r---------------mgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK 332 (518)
T KOG1941|consen 282 --------------R---------------MGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLK 332 (518)
T ss_pred --------------h---------------HHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHH
Confidence 0 00112233333333222222 3467766666662 222 2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002100 820 AHQGLARVYHLKNQRKAAYDEMTKLIEK 847 (967)
Q Consensus 820 a~~~la~~~~~~g~~~~A~~~~~~al~~ 847 (967)
.+..++.+|..+|.-++-...+.++-+.
T Consensus 333 ~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 333 LHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 7888999999998887777666665443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.8e-08 Score=109.77 Aligned_cols=98 Identities=17% Similarity=0.156 Sum_probs=91.3
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALED 601 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~ 601 (967)
|..+...+.| ++|+..|+++++++|++..+|+.+|.++...|++++|+..+++++.++| ++.+++.+|.++..+|+
T Consensus 9 a~~a~~~~~~---~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDF---ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3444445545 9999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCchHHh
Q 002100 602 YDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 602 ~~~A~~~~~~al~l~p~~~~~~ 623 (967)
|++|+..|++++.++|++..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~ 107 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFT 107 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999887
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.6e-08 Score=95.12 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=96.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHH
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEA 901 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA 901 (967)
-.-|.-++..|+|++|...|..+|+..|.... ......|.++|.+++++++++.|
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-------------------------e~rsIly~Nraaa~iKl~k~e~a 153 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTST-------------------------EERSILYSNRAAALIKLRKWESA 153 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccH-------------------------HHHHHHHhhhHHHHHHhhhHHHH
Confidence 33455667777777777777777777764211 01235678899999999999999
Q ss_pred HHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 002100 902 IAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 902 i~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
|..+.++|+++|.+. ++..||.+|.++.++++|+.+|+++++.+|...++.+...|+...+.
T Consensus 154 I~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 154 IEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 999999999999965 88999999999999999999999999999999999988888776554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-07 Score=94.78 Aligned_cols=171 Identities=12% Similarity=0.081 Sum_probs=124.1
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC----ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhh
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKV----SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLH 627 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 627 (967)
.+..++..|..++..|+|.+|+..|++++...| .+.+.+.+|.+++..|++++|+..+++.++..|+++.+-..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A-- 81 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA-- 81 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH--
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH--
Confidence 356788999999999999999999999999988 36799999999999999999999999999999998865422
Q ss_pred hhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH-----------------HHHHHHHHH
Q 002100 628 GDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR-----------------FRQSLLLLR 690 (967)
Q Consensus 628 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~-----------------~~~g~~~~~ 690 (967)
.+.++..+.....-. + .+ .........|+..++..+...|+...+- +..|..|.+
T Consensus 82 -~Y~~g~~~~~~~~~~-----~-~~-~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 82 -LYMLGLSYYKQIPGI-----L-RS-DRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK 153 (203)
T ss_dssp -HHHHHHHHHHHHHHH-----H--T-T---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHhCccc-----h-hc-ccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 266666554432111 0 00 0000011245888999999999875321 356888999
Q ss_pred hcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHH
Q 002100 691 LNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEAL 732 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~ 732 (967)
.|.|..|+.-++.+++..|+. .+++..++.++..+|..+.|.
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999999999999885 467889999999999988554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.6e-09 Score=105.52 Aligned_cols=235 Identities=10% Similarity=0.013 Sum_probs=171.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCC
Q 002100 681 RFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSL 760 (967)
Q Consensus 681 ~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~ 760 (967)
.-.+|.-|+++|.|++|+.+|.+++..+|.++-.+.+.+.+|+++.++..|...++.|+.++..+.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~-------------- 165 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV-------------- 165 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH--------------
Confidence 456789999999999999999999999999999999999999999999999999999998887554
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhC------
Q 002100 761 NPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKN------ 832 (967)
Q Consensus 761 ~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g------ 832 (967)
.+|...|.+...+|+..+|.+.++.++++.|.. ..-.++.+.....
T Consensus 166 --------------------------KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~K 219 (536)
T KOG4648|consen 166 --------------------------KAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATK 219 (536)
T ss_pred --------------------------HHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhh
Confidence 788889999999999999999999999866543 2222222211000
Q ss_pred ---CHHHHHHHHHHHH-HHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002100 833 ---QRKAAYDEMTKLI-EKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRA 908 (967)
Q Consensus 833 ---~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~ka 908 (967)
-+-.|..-..++| ...+. ..+. ..+.++.++.++.+-+..+.++.....+ +..|.+..++++|+....++
T Consensus 220 sT~G~~~A~Q~~~Q~l~~K~~G--~~Fs---k~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~ 293 (536)
T KOG4648|consen 220 STPGFTPARQGMIQILPIKKPG--YKFS---KKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKK 293 (536)
T ss_pred cCCCCCccccchhhhccccCcc--hhhh---hhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHh
Confidence 0111222222222 11111 1111 1256667777776666655555544444 77888889999999999999
Q ss_pred HhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhh
Q 002100 909 IAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATER 961 (967)
Q Consensus 909 l~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~ 961 (967)
+-.+|.+ .....++.+.--.|...+|..+++.++.+.|.+....+-..|....
T Consensus 294 ~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~~~~ 347 (536)
T KOG4648|consen 294 TNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETRKDTK 347 (536)
T ss_pred cCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhhhccc
Confidence 9888874 3555667777778899999999999999999998887777776544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.1e-07 Score=99.45 Aligned_cols=173 Identities=17% Similarity=0.162 Sum_probs=105.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHH
Q 002100 718 EGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYV 797 (967)
Q Consensus 718 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~ 797 (967)
.|..|...|++++|...|.++........ +....+..|...+.+|.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~----------------------------------~~~~Aa~~~~~Aa~~~k 86 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLG----------------------------------DKFEAAKAYEEAANCYK 86 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-----------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcC----------------------------------CHHHHHHHHHHHHHHHH
Confidence 47778888999999999988875543111 01122356677777776
Q ss_pred hcccHHHHHHHHHHHhc----cCcH----HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHH
Q 002100 798 DCEKLDLAADCYMNALN----IKHT----RAHQGLARVYHLK-NQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAK 868 (967)
Q Consensus 798 ~~g~~~~A~~~~~~Al~----~~~~----~a~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~ 868 (967)
.. ++++|+.+|++|++ .+.. ..+..+|.+|... |++++|++.|+++++.......... +
T Consensus 87 ~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~----------a- 154 (282)
T PF14938_consen 87 KG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS----------A- 154 (282)
T ss_dssp HT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH----------H-
T ss_pred hh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh----------H-
Confidence 66 99999999999987 3332 2778899999988 9999999999999887553211100 0
Q ss_pred HHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-----h---HHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 869 SDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-----L---QLLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 869 ~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-----~---~~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
...+...|.++.+.|+|++|++.|+++....-+ . ..+...+.+++.+||...|...+++
T Consensus 155 -------------~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 155 -------------AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp -------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 123344556666666666666666666553322 1 1333445566666666666666666
Q ss_pred HHhcCCCch
Q 002100 941 ALCLDPNHT 949 (967)
Q Consensus 941 al~~~P~~~ 949 (967)
....+|...
T Consensus 222 ~~~~~~~F~ 230 (282)
T PF14938_consen 222 YCSQDPSFA 230 (282)
T ss_dssp HGTTSTTST
T ss_pred HHhhCCCCC
Confidence 666666543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6e-08 Score=103.74 Aligned_cols=130 Identities=18% Similarity=0.173 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHH
Q 002100 821 HQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE 900 (967)
Q Consensus 821 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 900 (967)
....|..|++.|+|..|...|++++..-..... . +.++.... .+ .....+.|+|.++.++++|.+
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~-------~-~~ee~~~~--~~-----~k~~~~lNlA~c~lKl~~~~~ 275 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRS-------F-DEEEQKKA--EA-----LKLACHLNLAACYLKLKEYKE 275 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhcccc-------C-CHHHHHHH--HH-----HHHHHhhHHHHHHHhhhhHHH
Confidence 344677888888888888888888875432100 0 00111100 11 123568899999999999999
Q ss_pred HHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhhhc
Q 002100 901 AIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNEQ 965 (967)
Q Consensus 901 Ai~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~~~ 965 (967)
|+..++++|+.+|++. +++.+|.++..+|+++.|+.+|++|++++|+|.++..-+.++.++++.+
T Consensus 276 Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 276 AIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999965 9999999999999999999999999999999999988888888876543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.2e-08 Score=81.35 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=63.0
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE-DYDGALRDVRALLTLDP 617 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~l~p 617 (967)
++..|..+|.+++..|++++|+..|+++++++| ++.+++.+|.+|..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 567899999999999999999999999999999 8999999999999999 79999999999999998
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.8e-08 Score=80.07 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcC-ChHHHHHHHHHHHhccc
Q 002100 677 KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTG-HREEALAKAEESISIQR 743 (967)
Q Consensus 677 ~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g-~~~eA~~~~~~al~~~p 743 (967)
++..++.+|.++...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56789999999999999999999999999999999999999999999999 79999999999999987
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.5e-07 Score=105.21 Aligned_cols=146 Identities=16% Similarity=0.135 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHhCchhH--HHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHh
Q 002100 456 KQLAFHQLGVVMLEREE---YKDAQNWFKAAVEAGHIYS--LVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERS 530 (967)
Q Consensus 456 ~a~a~~~lG~~~~~~g~---y~~A~~~f~~al~~~~~~a--~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~ 530 (967)
.+..++..|..++...+ .++|+.+|++|++++|.++ +.+++.++.....+ .. ....
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~--------------~~-----~~~~ 398 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQ--------------QP-----LDEK 398 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhc--------------CC-----ccHH
Confidence 45566777777776554 8899999999999999654 44444444221110 00 0001
Q ss_pred hcCChHHHHHHHHHhHhh--CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHH
Q 002100 531 LYCSGKEKMMDLNTATEL--DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRD 608 (967)
Q Consensus 531 ~y~~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~ 608 (967)
+...+.....+++.+ +|..+.+|..+|..+...|++++|...+++++.++|+..+|..+|.++...|++++|++.
T Consensus 399 ---~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~ 475 (517)
T PRK10153 399 ---QLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADA 475 (517)
T ss_pred ---HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 125566666776664 777888899999999999999999999999999999989999999999999999999999
Q ss_pred HHHHHHhCCCchHHh
Q 002100 609 VRALLTLDPSYMMFY 623 (967)
Q Consensus 609 ~~~al~l~p~~~~~~ 623 (967)
|++++.++|.++..+
T Consensus 476 ~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 476 YSTAFNLRPGENTLY 490 (517)
T ss_pred HHHHHhcCCCCchHH
Confidence 999999999988655
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.6e-07 Score=97.10 Aligned_cols=144 Identities=14% Similarity=0.121 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHH
Q 002100 459 AFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEK 538 (967)
Q Consensus 459 a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A 538 (967)
....-|..|++.|+|..|..-|++|+..=.. ...-+.++......-.+..+.|++.++.++..| .+|
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~----------~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~---~~A 276 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEY----------RRSFDEEEQKKAEALKLACHLNLAACYLKLKEY---KEA 276 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhc----------cccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhH---HHH
Confidence 3456799999999999999999999886110 000000111111122223444555555555555 566
Q ss_pred HHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHH-HHHHHHHHHh
Q 002100 539 MMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGA-LRDVRALLTL 615 (967)
Q Consensus 539 ~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A-~~~~~~al~l 615 (967)
+...+++|+++|+|..++|.+|.++..+++|+.|+..|+++++++| |..+...+..+..+..++.+. .+.|...+..
T Consensus 277 i~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 277 IESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666666666666666666666666666666666666666666666 555555555555444444333 4445544443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-08 Score=102.22 Aligned_cols=200 Identities=11% Similarity=0.055 Sum_probs=142.1
Q ss_pred CcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHH
Q 002100 520 TPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIA 598 (967)
Q Consensus 520 ~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~ 598 (967)
...|+-|++++.| ++|+.+|.+++..+|.|+..+.++|.+|+++++|..|...++.|+.++. ...+|..++.....
T Consensus 101 KE~GN~yFKQgKy---~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 101 KERGNTYFKQGKY---EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES 177 (536)
T ss_pred HHhhhhhhhccch---hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3458899999988 9999999999999999999999999999999999999999999999999 78899999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh
Q 002100 599 LEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS 678 (967)
Q Consensus 599 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~ 678 (967)
+|...+|.++++.+|.+.|++....- .+..+....+++ +.. -+....+.|...-.+++..
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK----------~~a~i~Sl~E~~----I~~-KsT~G~~~A~Q~~~Q~l~~----- 237 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKK----------SLARINSLRERK----IAT-KSTPGFTPARQGMIQILPI----- 237 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHH----------HHHHhcchHhhh----HHh-hcCCCCCccccchhhhccc-----
Confidence 99999999999999999999665541 111111111211 000 0000011122222222211
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
-..|..+...+.++.++.++.+-+.....+.....+ +..+.+.-++++|+....+++..+|...
T Consensus 238 ---K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~ 301 (536)
T KOG4648|consen 238 ---KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPM 301 (536)
T ss_pred ---cCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcC
Confidence 123556667778888888777665554443333333 5566677788888888888887777443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-05 Score=83.98 Aligned_cols=246 Identities=13% Similarity=0.111 Sum_probs=165.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCCC----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKVS----PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNL 631 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 631 (967)
....|.-++...++++|+....+.+..-.+ ...+-.+..+...+|.|++++..--..+...-+..+......+..+
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ln 88 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLN 88 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677778888888888887765442 2344455667777888888776544333332211111111122256
Q ss_pred HhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCC-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002100 632 VETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGK-----SLLRFRQSLLLLRLNSQKAAMRSLRLARN 706 (967)
Q Consensus 632 ~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~-----~~~~~~~g~~~~~~g~~~~A~~~l~~al~ 706 (967)
++..+..+.++.++ +.+-..-+.+.... ......+|..+..++.++++++.|+.|++
T Consensus 89 lar~~e~l~~f~kt------------------~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~ 150 (518)
T KOG1941|consen 89 LARSNEKLCEFHKT------------------ISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALR 150 (518)
T ss_pred HHHHHHHHHHhhhH------------------HHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 66777776667666 44444444432211 24556688999999999999999999998
Q ss_pred cCCchh------HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCC
Q 002100 707 YSTSEH------EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPS 780 (967)
Q Consensus 707 ~~p~~~------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~ 780 (967)
...++. .++..+|..+-...++++|+-+..+|.++-.+.. +.| -+.
T Consensus 151 ~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~--------l~d------~~~-------------- 202 (518)
T KOG1941|consen 151 YAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG--------LKD------WSL-------------- 202 (518)
T ss_pred HhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC--------cCc------hhH--------------
Confidence 755443 4677899999999999999988888876654221 000 000
Q ss_pred CCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc----Cc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 002100 781 DGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI----KH----TRAHQGLARVYHLKNQRKAAYDEMTKLIEKAR 849 (967)
Q Consensus 781 ~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~----~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 849 (967)
.....+++.++..+..+|..-.|.++.++|.++ ++ ...+..+|.+|...|+.+.|...|+.+.....
T Consensus 203 --kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 203 --KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA 277 (518)
T ss_pred --HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 012257788999999999999999999998872 22 23677799999999999999999998876543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.2e-07 Score=90.63 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
...++.+|..+...|++++|+..|+++++..|+. ..++..+|.++...|++++|+..+++++...|
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3445555555555555555555555555444332 23445555555555555555555555555444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-06 Score=95.09 Aligned_cols=223 Identities=12% Similarity=0.065 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----c-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYST-----S-EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKA 752 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p-----~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 752 (967)
..+...|..|...+++++|...|.++....- . ....+...+.++.+. ++++|+..|++++.+.....
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G------ 108 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG------ 108 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC------
Confidence 3455668888899999999999998865432 1 134555666666555 99999999999996643211
Q ss_pred HHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc-ccHHHHHHHHHHHhcc----CcH----HHHHH
Q 002100 753 YALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC-EKLDLAADCYMNALNI----KHT----RAHQG 823 (967)
Q Consensus 753 ~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~-g~~~~A~~~~~~Al~~----~~~----~a~~~ 823 (967)
.....+..+.++|.+|... +++++|+++|++|++. +.. ..+..
T Consensus 109 ----------------------------~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~ 160 (282)
T PF14938_consen 109 ----------------------------RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK 160 (282)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ----------------------------cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence 0112346788999999999 9999999999999982 221 27888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHH
Q 002100 824 LARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIA 903 (967)
Q Consensus 824 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~ 903 (967)
+|.++...|+|++|++.|+++....-++... .......+...+.+++..|++..|..
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~-----------------------~~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLL-----------------------KYSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT-----------------------GHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhccccc-----------------------chhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999888754321000 00011234456678888899999999
Q ss_pred HHHHHHhcCCCh----H--HHHHHHHHHHH--cCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 904 ELSRAIAFKPDL----Q--LLHLRAAFHDS--MGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 904 ~~~kal~~~p~~----~--~~~~~a~~~~~--~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
.+++....+|.. + .+..+-.++.. ...+.+|+..|...-.+ |++...++.++++.+
T Consensus 218 ~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l---d~w~~~~l~~~k~~~ 281 (282)
T PF14938_consen 218 ALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL---DNWKTKMLLKIKKKI 281 (282)
T ss_dssp HHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS------HHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc---HHHHHHHHHHHHhhc
Confidence 999999998862 2 44444444443 34577888888776555 557777777777654
|
|
| >KOG0511 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-07 Score=98.43 Aligned_cols=144 Identities=16% Similarity=0.167 Sum_probs=115.3
Q ss_pred EEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccc--eEEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHHHHHHHH
Q 002100 258 MSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRRE--KVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVLELLSF 335 (967)
Q Consensus 258 v~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~--~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ll~~ 335 (967)
|.+-+++ +.|||+.++ .|..||+.||.|+|.|+..+ ...++-++.+..+.+.+++|+|+++. ++.++-..+++-+
T Consensus 295 iql~~~~-RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~t-di~~~~A~dvll~ 371 (516)
T KOG0511|consen 295 IQLPEED-RYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQT-DIIFDVASDVLLF 371 (516)
T ss_pred ccccccc-cccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccc-cchHHHHhhHHHH
Confidence 4444444 599999999 57799999999999996422 23333344888999999999999999 8999999999999
Q ss_pred hchhChH--H-HHHHHHHHHHhhCC--ChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhhcCCchhHhhhhcc
Q 002100 336 ANRFCCE--E-LKSACDSYLASMVS--DIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCS 404 (967)
Q Consensus 336 A~~~~~~--~-l~~~c~~~l~~~~~--~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~l~~~~~~~ll~s 404 (967)
|+++.+. + ||.+....|.+... +.-+|..+++++.......|..++..|+.+++...++.|++...+..
T Consensus 372 ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~ 445 (516)
T KOG0511|consen 372 ADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRT 445 (516)
T ss_pred hhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHh
Confidence 9999776 2 56665555544322 15679999999999999999999999999999999999888876654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-06 Score=84.42 Aligned_cols=120 Identities=17% Similarity=0.096 Sum_probs=89.7
Q ss_pred HHhcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCch
Q 002100 689 LRLNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESS 765 (967)
Q Consensus 689 ~~~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~ 765 (967)
...+++..+...++..+...|+. ..+.+.+|.+++..|++++|...|++++...|+..
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~------------------- 82 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE------------------- 82 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH-------------------
Confidence 35677888888888888888877 45677788888888888888888888887665433
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC-cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002100 766 AYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK-HTRAHQGLARVYHLKNQRKAAYDEMTKL 844 (967)
Q Consensus 766 ~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~-~~~a~~~la~~~~~~g~~~~A~~~~~~a 844 (967)
....+...++.++...|++++|+..++...... ...++..+|.++..+|++++|+..|+++
T Consensus 83 ------------------l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 83 ------------------LKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred ------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 122467778888888888888888886643322 2236777888888888888888888876
Q ss_pred H
Q 002100 845 I 845 (967)
Q Consensus 845 l 845 (967)
+
T Consensus 145 l 145 (145)
T PF09976_consen 145 L 145 (145)
T ss_pred C
Confidence 4
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-07 Score=76.70 Aligned_cols=64 Identities=23% Similarity=0.226 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCch
Q 002100 557 KYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYM 620 (967)
Q Consensus 557 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 620 (967)
+.+|..++..|++++|+..|+++++.+| ++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4679999999999999999999999999 899999999999999999999999999999999875
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-07 Score=76.48 Aligned_cols=64 Identities=27% Similarity=0.225 Sum_probs=58.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 002100 886 RYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 886 ~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~ 949 (967)
+.+|..++..|++++|+..|+++++..|+ .++++.+|.++..+|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35789999999999999999999999999 46999999999999999999999999999999986
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.4e-06 Score=94.00 Aligned_cols=158 Identities=10% Similarity=0.077 Sum_probs=103.5
Q ss_pred HHHHHHHHHhcC---cHHHHHHHHHHHh---ccCC-ChhHHHHHHHHHHHh---------cCHHHHHHHHHHHHHhCCCc
Q 002100 556 YKYRAILLVEEN---KLAAAITEINRII---GFKV-SPDCLELRAWISIAL---------EDYDGALRDVRALLTLDPSY 619 (967)
Q Consensus 556 ~~~la~~~~~~g---~~~~A~~~~~~al---~~~p-~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~l~p~~ 619 (967)
++.+|...+..+ ..+.|+..|.+++ .++| ...+|..+|.++... .+-.+|.+..+++++++|++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 377777776655 3567888999999 8888 788999999988765 12345566666666666666
Q ss_pred hHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHH
Q 002100 620 MMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMR 699 (967)
Q Consensus 620 ~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~ 699 (967)
+.+. ..+|.+....++++.| +..+++++.++|+.+.+++..|.+..-.|+.++|++
T Consensus 338 a~a~------~~~g~~~~~~~~~~~a------------------~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 338 GKIL------AIMGLITGLSGQAKVS------------------HILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HHHH------HHHHHHHHhhcchhhH------------------HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666 4556655555555555 666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCchhHHHHHHHHH-HHHcCChHHHHHHHHH
Q 002100 700 SLRLARNYSTSEHEKLVYEGWI-LYDTGHREEALAKAEE 737 (967)
Q Consensus 700 ~l~~al~~~p~~~~a~~~lg~~-~~~~g~~~eA~~~~~~ 737 (967)
.++++++++|....+-...-++ .+.....++|++.|-+
T Consensus 394 ~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 394 CIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 6666666666655554444444 4444555666665544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.8e-07 Score=82.17 Aligned_cols=107 Identities=15% Similarity=0.139 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHh
Q 002100 713 EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNL 792 (967)
Q Consensus 713 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~l 792 (967)
+.++.+|..+...|++++|+..|++++..+|++. ....+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~l 45 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST-------------------------------------YAPNAHYWL 45 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-------------------------------------ccHHHHHHH
Confidence 4566677777777777777777777776666332 122466677
Q ss_pred HHHHHhcccHHHHHHHHHHHhcc--Cc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHH
Q 002100 793 GSVYVDCEKLDLAADCYMNALNI--KH---TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYE 856 (967)
Q Consensus 793 g~~~~~~g~~~~A~~~~~~Al~~--~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 856 (967)
|.++...|++++|+..|++++.. ++ ..++..+|.++..+|++++|+..++++++..|++..+..
T Consensus 46 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 46 GEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 77777777777777777777762 22 236777777778888888888888888888777655443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.9e-07 Score=88.37 Aligned_cols=114 Identities=17% Similarity=0.129 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHH
Q 002100 694 QKAAMRSLRLARNYSTSE--HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQL 771 (967)
Q Consensus 694 ~~~A~~~l~~al~~~p~~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~ 771 (967)
+..+...+...++.++.+ ...++.+|.++...|++++|+..|++++.+.|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------------------- 69 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------------------- 69 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-------------------------
Confidence 334444444443444433 44556677777777777777777777776654221
Q ss_pred HHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH--HHHHHHHHHHH-------HhCCHHHHHHHHH
Q 002100 772 LEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT--RAHQGLARVYH-------LKNQRKAAYDEMT 842 (967)
Q Consensus 772 le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--~a~~~la~~~~-------~~g~~~~A~~~~~ 842 (967)
....++.++|.++...|++++|+.+|++++.+.+. ..+..+|.++. .+|+++.|+..++
T Consensus 70 ------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 70 ------------DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred ------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 11246677777777777777777777777764332 35555555555 5556665555444
Q ss_pred HH
Q 002100 843 KL 844 (967)
Q Consensus 843 ~a 844 (967)
++
T Consensus 138 ~a 139 (168)
T CHL00033 138 QA 139 (168)
T ss_pred HH
Confidence 33
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-06 Score=100.69 Aligned_cols=145 Identities=11% Similarity=0.040 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchH
Q 002100 588 CLELRAWISIALED---YDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSL 664 (967)
Q Consensus 588 ~~~~la~~~~~~g~---~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al 664 (967)
.++++|.-|...++ ...|+..|+++++++|++..++. .++.++.....|...+ ..+...+.
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A------~la~~~~~~~~~~~~~----------~~~l~~a~ 404 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQA------EKALADIVRHSQQPLD----------EKQLAALS 404 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHH------HHHHHHHHHHhcCCcc----------HHHHHHHH
Confidence 34556666655443 66777777888888887777762 2233332222221100 00001123
Q ss_pred HHHHHHHh--cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 002100 665 AVVHHMLA--NDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQ 742 (967)
Q Consensus 665 ~~~~~~l~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 742 (967)
....+++. .+|..+.++..+|..+...|++++|...+++|+.++|+ ..+|..+|.++...|++++|+..|++|+.++
T Consensus 405 ~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 405 TELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44445555 37777888999999999999999999999999999995 7899999999999999999999999999999
Q ss_pred cchHHHH
Q 002100 743 RSFEAFF 749 (967)
Q Consensus 743 p~~~~~~ 749 (967)
|.++.++
T Consensus 484 P~~pt~~ 490 (517)
T PRK10153 484 PGENTLY 490 (517)
T ss_pred CCCchHH
Confidence 9877443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-05 Score=80.24 Aligned_cols=258 Identities=15% Similarity=0.070 Sum_probs=178.2
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH-HhhhcCCCCCchH
Q 002100 688 LLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY-ALADSSLNPESSA 766 (967)
Q Consensus 688 ~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~-~la~~~~~~~~~~ 766 (967)
++..|.|.+++..-++.-... ...+...++.+.|..+|++..-+.....+- ..| +.+. .+++..-.+...+
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~-~~~------lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK-ATP------LQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc-CCh------HHHHHHHHHHhhCcchhH
Confidence 455788888887666654443 677788888889998888776554443332 111 1111 2233222333333
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002100 767 YVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 767 ~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 846 (967)
..+.-+.+......... ..-....-|.+|...+++++|++..... ..-.+...-..++.++.+.+-|.+.+++..+
T Consensus 90 ~~~~~l~E~~a~~~~~s-n~i~~l~aa~i~~~~~~~deAl~~~~~~---~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 90 SILASLYELVADSTDGS-NLIDLLLAAIIYMHDGDFDEALKALHLG---ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHHhhccch-hHHHHHHhhHHhhcCCChHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333332222221 1123445588999999999999988772 2233444445678888999999999999988
Q ss_pred HccC-----CHHHHHHHHcc-CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHH
Q 002100 847 KARN-----NASAYEKRSEY-CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLH 919 (967)
Q Consensus 847 ~~p~-----~~~~~~~~~~~-~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~ 919 (967)
.+.+ .+.+|...+.- .+...|.-.|+..-+..|..+..+..+|.+.+.+++|++|...++.++..+++ ++.+.
T Consensus 166 ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 166 IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 8765 35556665543 56889999999998877778899999999999999999999999999999988 67999
Q ss_pred HHHHHHHHcCChHHHHH-HHHHHHhcCCCchhHHHHHHH
Q 002100 920 LRAAFHDSMGDHLHTQR-DCEAALCLDPNHTDTLELYDK 957 (967)
Q Consensus 920 ~~a~~~~~~g~~~~A~~-~~~~al~~~P~~~~~l~l~~r 957 (967)
++-.+-..+|...++.. .+.+....+|+|+.+.++-.+
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ek 284 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEK 284 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 99888888888766654 556666778999977665443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-06 Score=91.01 Aligned_cols=125 Identities=18% Similarity=0.103 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhC---CCHHHHHHHHH
Q 002100 834 RKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDD---HKEAEAIAELS 906 (967)
Q Consensus 834 ~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~---g~~~eAi~~~~ 906 (967)
.+.-+.-++.-+..+|+++.-|..+|.. +++..|...|.+|+++.|+++..+..+|.+++.+ ....+|...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3444445555556666666666666632 5666666666666666666666666666665554 34556666677
Q ss_pred HHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 002100 907 RAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKA 958 (967)
Q Consensus 907 kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~ 958 (967)
+++..+|.+ .+++.+|..++..|+|.+|...++..++..|.+..-..+..+.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 777777663 3666677777777777777777777776666655544444443
|
|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.6e-08 Score=109.38 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=55.6
Q ss_pred CCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccc------------eEEeccCCCCHHHHHHHHHhHcCCC
Q 002100 253 DEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRRE------------KVNFSQNGISVEAMRAAEEFSRTKM 320 (967)
Q Consensus 253 ~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~------------~i~~~~~~~~~~~~~~~l~~~Yt~~ 320 (967)
+.+.||||.||++.|+|||.||++||++|+.+|...-.-+..+ +|.+.+ |.|..|+.+|+||||++
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~--i~p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVED--IPPLMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeecc--CCHHHHHHHHHHHhccc
Confidence 4679999999999999999999999999999997543332222 344655 99999999999999997
Q ss_pred C
Q 002100 321 L 321 (967)
Q Consensus 321 ~ 321 (967)
+
T Consensus 634 ~ 634 (1267)
T KOG0783|consen 634 L 634 (1267)
T ss_pred c
Confidence 6
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4e-05 Score=79.41 Aligned_cols=184 Identities=23% Similarity=0.246 Sum_probs=120.1
Q ss_pred HHHHHHHHHhHhhCCC--CchhHHHHHHHHHhcCcHHHHHHHHHHHhc--cCC-ChhHHHHHHHHHHHhcCHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPT--LSYPYKYRAILLVEENKLAAAITEINRIIG--FKV-SPDCLELRAWISIALEDYDGALRDVR 610 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p-~~~~~~~la~~~~~~g~~~~A~~~~~ 610 (967)
..+...+...+...+. ....+...+..+...+++..++..+...+. ..+ ....+...+..+...+++..++..+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
T COG0457 40 AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLE 119 (291)
T ss_pred HHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5666666677766665 367777888888888888888888888876 455 67788888888888888888888888
Q ss_pred HHHHhCCCchHHhhhhhhhhhHhh-hHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCC---CChHHHHHHHH
Q 002100 611 ALLTLDPSYMMFYGQLHGDNLVET-LQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDP---GKSLLRFRQSL 686 (967)
Q Consensus 611 ~al~l~p~~~~~~~~~~~~~~~~~-l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p---~~~~~~~~~g~ 686 (967)
+++...+...... ..... ++...++++.+ +..+.+++..+| .........+.
T Consensus 120 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~a------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 120 KALALDPDPDLAE------ALLALGALYELGDYEEA------------------LELYEKALELDPELNELAEALLALGA 175 (291)
T ss_pred HHHcCCCCcchHH------HHHHHHHHHHcCCHHHH------------------HHHHHHHHhcCCCccchHHHHHHhhh
Confidence 8888777653333 22223 45555555555 555665555444 23334444444
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 687 LLLRLNSQKAAMRSLRLARNYSTS-EHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 687 ~~~~~g~~~~A~~~l~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
.+...++++.|+..+.+++...+. ....+..++..+...+++++|+..+.+++...|
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 455556666666666666666666 455566666666666666666666666665555
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00056 Score=74.53 Aligned_cols=378 Identities=14% Similarity=0.059 Sum_probs=233.2
Q ss_pred hhHHHHHHHHHhcC--cHHHHHHHHHHHhccCC----ChhHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCCchHHh-hh
Q 002100 554 YPYKYRAILLVEEN--KLAAAITEINRIIGFKV----SPDCLELRAWIS-IALEDYDGALRDVRALLTLDPSYMMFY-GQ 625 (967)
Q Consensus 554 ~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p----~~~~~~~la~~~-~~~g~~~~A~~~~~~al~l~p~~~~~~-~~ 625 (967)
.++..+|..+...+ +...++++++..+...| .......+|.+. .-..+.+.|...++++..+...-+.++ .+
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 45667788888888 89999999999999988 244566666654 457899999999999998754444443 11
Q ss_pred hhhhhhHhhhHHHhh-chhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChH----HHHHHHHHHHHhcCHHHHHHH
Q 002100 626 LHGDNLVETLQPLVQ-QWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSL----LRFRQSLLLLRLNSQKAAMRS 700 (967)
Q Consensus 626 ~~~~~~~~~l~~~~~-~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~----~~~~~g~~~~~~g~~~~A~~~ 700 (967)
..+..+++.++.+.. .++.+ -..+.+++++....+. +.+.++.++.-.+++..|++.
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~------------------KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPA------------------KALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchH------------------HHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHH
Confidence 222356666666655 33344 6778888888766653 567889999999999999998
Q ss_pred HHHHHhcCCchhHHH----HH--HHHHHHHc---CChHHHHHHHHHHHhcccchHHH--HHHHH----HhhhcCCCCCch
Q 002100 701 LRLARNYSTSEHEKL----VY--EGWILYDT---GHREEALAKAEESISIQRSFEAF--FLKAY----ALADSSLNPESS 765 (967)
Q Consensus 701 l~~al~~~p~~~~a~----~~--lg~~~~~~---g~~~eA~~~~~~al~~~p~~~~~--~~~~~----~la~~~~~~~~~ 765 (967)
+.--.+....-...| +. .+.++... .+.+.+.....+..+....+... .++.+ .+ -.+..+++.
T Consensus 150 Lavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql-~yy~~~gq~ 228 (629)
T KOG2300|consen 150 LAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQL-SYYLLPGQV 228 (629)
T ss_pred HhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH-HHHhcccch
Confidence 544333222222222 22 22333322 33444555555554433222211 12222 11 123445555
Q ss_pred HHHHHHHHHHhcCCCCC-----------------------Cc-hHHHHHHhHHH--HHhcccHHHHHHHHHHHhcc----
Q 002100 766 AYVIQLLEEALRCPSDG-----------------------LR-KGQALNNLGSV--YVDCEKLDLAADCYMNALNI---- 815 (967)
Q Consensus 766 ~~a~~~le~~~~~~~~~-----------------------~~-~~~a~~~lg~~--~~~~g~~~~A~~~~~~Al~~---- 815 (967)
..+...++++.+..... |. ...++..+-.+ -.-.|-+++|.++-++++..
T Consensus 229 rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~ekl 308 (629)
T KOG2300|consen 229 RTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKL 308 (629)
T ss_pred hhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhc
Confidence 56665555544322111 00 01111111111 12456778888887777761
Q ss_pred ---C-cH--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---cC-------CHHHHHHHHcc----CChHHHHH
Q 002100 816 ---K-HT--------RAHQGLARVYHLKNQRKAAYDEMTKLIEKA---RN-------NASAYEKRSEY----CDRDMAKS 869 (967)
Q Consensus 816 ---~-~~--------~a~~~la~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~~~~~----~~~~~A~~ 869 (967)
+ .. ..+..++.+..-.|++.+|++....+.+.. |. .+.....+|.| +.++.|..
T Consensus 309 kq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~ 388 (629)
T KOG2300|consen 309 KQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEF 388 (629)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHH
Confidence 1 11 145557778888999999999887766543 33 34456667765 88999999
Q ss_pred HHHHhhccCCC-C--chHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--------hHHHHHHHHHHHHcCChHHHHHHH
Q 002100 870 DLSMATQLDPM-R--TYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD--------LQLLHLRAAFHDSMGDHLHTQRDC 938 (967)
Q Consensus 870 ~l~~al~l~p~-~--~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~--------~~~~~~~a~~~~~~g~~~~A~~~~ 938 (967)
.|..|+++-.. + +....++|.+|.+.++-+.--+.++..-..+.. ..+++..|.+.+.++++.+|...+
T Consensus 389 hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l 468 (629)
T KOG2300|consen 389 HFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFL 468 (629)
T ss_pred HHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999886432 3 334557899999988765544444433222111 127888999999999999999999
Q ss_pred HHHHhcCCCchhH
Q 002100 939 EAALCLDPNHTDT 951 (967)
Q Consensus 939 ~~al~~~P~~~~~ 951 (967)
++.|++. |..+.
T Consensus 469 ~e~Lkma-naed~ 480 (629)
T KOG2300|consen 469 RETLKMA-NAEDL 480 (629)
T ss_pred HHHHhhc-chhhH
Confidence 9999887 55444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1e-06 Score=87.93 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=34.9
Q ss_pred chHHHHHHHHhcCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHH
Q 002100 662 GSLAVVHHMLANDPGK---SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKA 735 (967)
Q Consensus 662 ~al~~~~~~l~~~p~~---~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~ 735 (967)
.|+..+.++++..|+. ...++.+|.++...|++++|+..+++++...|.+...+..+|.++...|+...+...+
T Consensus 53 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 53 EALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCH
Confidence 3444455444443321 2344445555555555555555555555555554444444555554444444444333
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00022 Score=81.73 Aligned_cols=295 Identities=15% Similarity=0.123 Sum_probs=166.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcH
Q 002100 490 YSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKL 569 (967)
Q Consensus 490 ~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 569 (967)
...+..|-+....|-.++|..+|++--. |.-+...|+..+.| ++|.+.-+.--.++ .-..|++.|..+...++.
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR-~DLlNKlyQs~g~w---~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKR-YDLLNKLYQSQGMW---SEAFEIAETKDRIH--LRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHhcccH---HHHHHHHhhcccee--hhhhHHHHHHHHHhhccH
Confidence 4444555566677777778777776422 22334455666655 55554433221111 234678888888888888
Q ss_pred HHHHHHHHHHh----------ccCC-----------ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhh
Q 002100 570 AAAITEINRII----------GFKV-----------SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHG 628 (967)
Q Consensus 570 ~~A~~~~~~al----------~~~p-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 628 (967)
+.|++.|+++- ..+| ++..|...|......|+.+.|+..|..+-..
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~------------- 941 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY------------- 941 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh-------------
Confidence 88888887652 2223 2335555677777778888888877766432
Q ss_pred hhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Q 002100 629 DNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARN-- 706 (967)
Q Consensus 629 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~-- 706 (967)
+-+..+....|+.++|+ .+.....+..+.|.+|..|-..|+..+|+..|.+|-.
T Consensus 942 -fs~VrI~C~qGk~~kAa-----------------------~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafs 997 (1416)
T KOG3617|consen 942 -FSMVRIKCIQGKTDKAA-----------------------RIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFS 997 (1416)
T ss_pred -hhheeeEeeccCchHHH-----------------------HHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 12233444455555551 2233455666778888888888999999887776533
Q ss_pred ----cCCch--hHH------------HHHHHHHHHHcC-ChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHH
Q 002100 707 ----YSTSE--HEK------------LVYEGWILYDTG-HREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAY 767 (967)
Q Consensus 707 ----~~p~~--~~a------------~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~ 767 (967)
+..++ .+- +...+..|...| +.+.|...|.+|=-+ .++..+|-.... -.
T Consensus 998 nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~--------~kALelAF~tqQ----f~ 1065 (1416)
T KOG3617|consen 998 NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMI--------GKALELAFRTQQ----FS 1065 (1416)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcch--------HHHHHHHHhhcc----cH
Confidence 22221 111 223344555555 677777777665322 222222211111 11
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHH------hcc--C--------------------cH-
Q 002100 768 VIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNA------LNI--K--------------------HT- 818 (967)
Q Consensus 768 a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~A------l~~--~--------------------~~- 818 (967)
+++++.+-+ +...++..+...+..+....+|++|+..+-.+ +.+ + ++
T Consensus 1066 aL~lIa~DL----d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e 1141 (1416)
T KOG3617|consen 1066 ALDLIAKDL----DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNE 1141 (1416)
T ss_pred HHHHHHHhc----CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccH
Confidence 222222111 22233456666677777777777777655333 220 0 00
Q ss_pred ----HHHHHHHHHHHHhCCHHHHHHHHHH
Q 002100 819 ----RAHQGLARVYHLKNQRKAAYDEMTK 843 (967)
Q Consensus 819 ----~a~~~la~~~~~~g~~~~A~~~~~~ 843 (967)
..+..+|.+..++|.|..|-+-|++
T Consensus 1142 ~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1142 QERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 2677788888888888888777763
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-06 Score=90.15 Aligned_cols=120 Identities=15% Similarity=0.081 Sum_probs=90.2
Q ss_pred hHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc---CHHHHHHHHH
Q 002100 535 GKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE---DYDGALRDVR 610 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g---~~~~A~~~~~ 610 (967)
.+..+.-++..+..||++++.|..+|.+|+.+|+++.|...|.+++++.| +++.+..+|.++.... ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 46667777777888888888888888888888888888888888888888 7888888877776553 3456777777
Q ss_pred HHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh
Q 002100 611 ALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS 678 (967)
Q Consensus 611 ~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~ 678 (967)
+++.++|++..+. ++++..+...++|.+| +..++.+++..|.+.
T Consensus 218 ~al~~D~~~iral------~lLA~~afe~g~~~~A------------------~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPANIRAL------SLLAFAAFEQGDYAEA------------------AAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCccHHHH------HHHHHHHHHcccHHHH------------------HHHHHHHHhcCCCCC
Confidence 7777777777777 6677777777777777 677777777666543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.2e-05 Score=76.63 Aligned_cols=222 Identities=23% Similarity=0.253 Sum_probs=149.9
Q ss_pred cCcHHHHHHHHHHHhccCCC---hhHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCchHHhhhhhhhhhHhhhHHHhh
Q 002100 566 ENKLAAAITEINRIIGFKVS---PDCLELRAWISIALEDYDGALRDVRALLT--LDPSYMMFYGQLHGDNLVETLQPLVQ 640 (967)
Q Consensus 566 ~g~~~~A~~~~~~al~~~p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~~~l~~~~~ 640 (967)
.+.+..+...+...+...+. .......+..+...+++..+...+...+. ..+.....+ ...+......+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 109 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEAL------LNLGLLLEALG 109 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHH------HHHHHHHHHHh
Confidence 46777788888888877773 57788888888888888888888888876 455555555 45556666666
Q ss_pred chhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCC---chhHHHH
Q 002100 641 QWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSL-LLLRLNSQKAAMRSLRLARNYST---SEHEKLV 716 (967)
Q Consensus 641 ~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~-~~~~~g~~~~A~~~l~~al~~~p---~~~~a~~ 716 (967)
++..+ +..+.+.+...+.........+. ++...++++.|...+++++...| .....+.
T Consensus 110 ~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (291)
T COG0457 110 KYEEA------------------LELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALL 171 (291)
T ss_pred hHHHH------------------HHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 66666 67777777766665444444555 67777777777777777766655 3445555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHH
Q 002100 717 YEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVY 796 (967)
Q Consensus 717 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~ 796 (967)
..+..+...+++++|+..+.+++...+.. ....+..++..+
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~ 212 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKLNPDD---------------------------------------DAEALLNLGLLY 212 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhhCccc---------------------------------------chHHHHHhhHHH
Confidence 55566666777777777777777666631 114566667777
Q ss_pred HhcccHHHHHHHHHHHhccCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002100 797 VDCEKLDLAADCYMNALNIKHT--RAHQGLARVYHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 797 ~~~g~~~~A~~~~~~Al~~~~~--~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
...+++++|+..+..++...+. ..+..++..+...+.++++...+.+++...|.
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7777777777777777775543 45555666666555667777777666666664
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-06 Score=91.81 Aligned_cols=113 Identities=9% Similarity=0.107 Sum_probs=92.0
Q ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCH
Q 002100 820 AHQGLARVY-HLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKE 898 (967)
Q Consensus 820 a~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~ 898 (967)
..+..|..+ ...|++++|+..|++.++.+|++ +..+.+++.+|.+|+..|++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s---------------------------~~a~~A~y~LG~~y~~~g~~ 196 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS---------------------------TYQPNANYWLGQLNYNKGKK 196 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---------------------------cchHHHHHHHHHHHHHcCCH
Confidence 444555544 45577777777777777776642 22256788999999999999
Q ss_pred HHHHHHHHHHHhcCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 002100 899 AEAIAELSRAIAFKPD----LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 899 ~eAi~~~~kal~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~ 959 (967)
++|+..|+++++..|+ +++++.+|.++..+|++++|+..|+++++.+|+.........|+.
T Consensus 197 ~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~ 261 (263)
T PRK10803 197 DDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLN 261 (263)
T ss_pred HHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHh
Confidence 9999999999999888 459999999999999999999999999999999998877777664
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.2e-07 Score=77.70 Aligned_cols=98 Identities=21% Similarity=0.271 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcC
Q 002100 680 LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSS 759 (967)
Q Consensus 680 ~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~ 759 (967)
.++.+|..+...|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------- 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------------- 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-------------
Confidence 3566778888888888888888888888888777888888888888888888888888887776433
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc
Q 002100 760 LNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH 817 (967)
Q Consensus 760 ~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~ 817 (967)
.++..+|.++...|++++|...+.++++..+
T Consensus 69 ---------------------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 69 ---------------------------KAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred ---------------------------hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 5677777777888888888888777776443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.8e-05 Score=85.31 Aligned_cols=291 Identities=16% Similarity=0.085 Sum_probs=165.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHH
Q 002100 591 LRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHM 670 (967)
Q Consensus 591 ~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~ 670 (967)
..|.+..++|-.++|+..|++.-.. -++..+|...+.|++| ++..+.-
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~--------------DLlNKlyQs~g~w~eA------------------~eiAE~~ 852 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRY--------------DLLNKLYQSQGMWSEA------------------FEIAETK 852 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH--------------HHHHHHHHhcccHHHH------------------HHHHhhc
Confidence 3455666777777777777766432 2345567777777777 2221110
Q ss_pred HhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH----------HhcCCc----------hhHHHHHHHHHHHHcCChHH
Q 002100 671 LANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLA----------RNYSTS----------EHEKLVYEGWILYDTGHREE 730 (967)
Q Consensus 671 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~a----------l~~~p~----------~~~a~~~lg~~~~~~g~~~e 730 (967)
-. -.....|++.+..+...++.+.|++.|+++ +..+|. +...|...|..+...|+.+.
T Consensus 853 DR--iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 853 DR--IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred cc--eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHH
Confidence 00 112234566666666777777777777654 223333 33456677888889999999
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHH
Q 002100 731 ALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYM 810 (967)
Q Consensus 731 A~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~ 810 (967)
|+..|..|-.... +....--.++.+++..+.++.. +..+-+.+|..|...|+..+|+..|.
T Consensus 931 Al~~Y~~A~D~fs-----------~VrI~C~qGk~~kAa~iA~esg--------d~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 931 ALSFYSSAKDYFS-----------MVRIKCIQGKTDKAARIAEESG--------DKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred HHHHHHHhhhhhh-----------heeeEeeccCchHHHHHHHhcc--------cHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999998863221 1111112233444444433321 22477889999999999999999998
Q ss_pred HHhccCcH----------HH------------HHHHHHHHHHhC-CHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHH
Q 002100 811 NALNIKHT----------RA------------HQGLARVYHLKN-QRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMA 867 (967)
Q Consensus 811 ~Al~~~~~----------~a------------~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A 867 (967)
+|-...+. +- ....|+.|...| +.+.|...|.++--+... + .++-.-+.-.|
T Consensus 992 rAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kA----L-elAF~tqQf~a 1066 (1416)
T KOG3617|consen 992 RAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKA----L-ELAFRTQQFSA 1066 (1416)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHH----H-HHHHhhcccHH
Confidence 87652211 11 112333344444 444555444433111100 0 00000111122
Q ss_pred HHHHHHhhccCCC-CchHHHHHHHHHHhCCCHHHHHHHHH------HHHhcC----------------CC----h-----
Q 002100 868 KSDLSMATQLDPM-RTYPYRYRAAVLMDDHKEAEAIAELS------RAIAFK----------------PD----L----- 915 (967)
Q Consensus 868 ~~~l~~al~l~p~-~~~~~~~la~~~~~~g~~~eAi~~~~------kal~~~----------------p~----~----- 915 (967)
++.. +-.++|+ ++..+..-+..+....+|++|+..+- .|+++. |. +
T Consensus 1067 L~lI--a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R 1144 (1416)
T KOG3617|consen 1067 LDLI--AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQER 1144 (1416)
T ss_pred HHHH--HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHH
Confidence 3322 2245665 45555555667777788998887653 444321 11 1
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 916 -QLLHLRAAFHDSMGDHLHTQRDCEAA 941 (967)
Q Consensus 916 -~~~~~~a~~~~~~g~~~~A~~~~~~a 941 (967)
+++..+|.+..++|.|..|-+-|.+|
T Consensus 1145 ~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1145 KQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 27888999999999999999888876
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-06 Score=84.86 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHH
Q 002100 820 AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEA 899 (967)
Q Consensus 820 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~ 899 (967)
.+..+|.++..+|++++|+..|++++...|+. +..+.++.++|.++...|+++
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~---------------------------~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP---------------------------YDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccc---------------------------hhhHHHHHHHHHHHHHcCCHH
Confidence 66777777877888888777777777664421 112346677777777777777
Q ss_pred HHHHHHHHHHhcCCCh-HHHHHHHHHHH-------HcCChH-------HHHHHHHHHHhcCCCch
Q 002100 900 EAIAELSRAIAFKPDL-QLLHLRAAFHD-------SMGDHL-------HTQRDCEAALCLDPNHT 949 (967)
Q Consensus 900 eAi~~~~kal~~~p~~-~~~~~~a~~~~-------~~g~~~-------~A~~~~~~al~~~P~~~ 949 (967)
+|+..+++++++.|.. ..+..+|.++. .+|+++ +|+..|++++..+|++.
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 7777777777777763 34555555555 666655 55666667778887654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-05 Score=75.99 Aligned_cols=149 Identities=19% Similarity=0.140 Sum_probs=120.4
Q ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCCh
Q 002100 788 ALNNLGSVYVDCEKLDLAADCYMNALN---IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDR 864 (967)
Q Consensus 788 a~~~lg~~~~~~g~~~~A~~~~~~Al~---~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 864 (967)
-.+.||....+.|++.+|...|++++. -+....+.++|+..+..+++..|...++++.+.+|.
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-------------- 156 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-------------- 156 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc--------------
Confidence 456788999999999999999999998 445568999999999999999999999888887773
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHH---
Q 002100 865 DMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAA--- 941 (967)
Q Consensus 865 ~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~a--- 941 (967)
-..++....+|.+|...|++.+|...|+.++...|++++....+..+.++|+..+|...+..+
T Consensus 157 --------------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 157 --------------FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred --------------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 234567778899999999999999999999999999998888899999999888887766554
Q ss_pred -HhcCCCch-hHHHHHHHHHhhhhh
Q 002100 942 -LCLDPNHT-DTLELYDKATERVNE 964 (967)
Q Consensus 942 -l~~~P~~~-~~l~l~~r~~~~~~~ 964 (967)
..-.|... .-.+.++++.++.++
T Consensus 223 ~~r~~~H~rkh~reW~~~A~~~~~q 247 (251)
T COG4700 223 AKRSRPHYRKHHREWIKTANERLKQ 247 (251)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHh
Confidence 33344433 345566666665554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.49 E-value=4e-06 Score=80.94 Aligned_cols=77 Identities=22% Similarity=0.199 Sum_probs=56.8
Q ss_pred HHHHHHHHHhHhhCCCC---chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTL---SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRA 611 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~ 611 (967)
++|+..|++++...|+. ..+.+.+|.+++..|++++|+..++.+ ...+ .+.++..+|.+|...|++++|+..|++
T Consensus 65 ~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 65 DEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44444444444443332 235667899999999999999999773 3333 778899999999999999999999998
Q ss_pred HH
Q 002100 612 LL 613 (967)
Q Consensus 612 al 613 (967)
+|
T Consensus 144 Al 145 (145)
T PF09976_consen 144 AL 145 (145)
T ss_pred hC
Confidence 74
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00078 Score=76.28 Aligned_cols=342 Identities=13% Similarity=0.043 Sum_probs=164.2
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHH
Q 002100 458 LAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKE 537 (967)
Q Consensus 458 ~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~ 537 (967)
..|-.-|.+|.+..++++|.++|++--..+. ...||+.. .-.+++..-..+|.-+...++| +.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~k---aielarfa-----------fp~evv~lee~wg~hl~~~~q~---da 724 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGK---AIELARFA-----------FPEEVVKLEEAWGDHLEQIGQL---DA 724 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHH---HHHHHHhh-----------CcHHHhhHHHHHhHHHHHHHhH---HH
Confidence 3444556666666677777777664322111 11122211 0111222222345555555555 77
Q ss_pred HHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 002100 538 KMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDP 617 (967)
Q Consensus 538 A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 617 (967)
|+..|-+|-- ...--.......+|.+|+..++.+...+.....|-..+.-|...|+|+-|.+.|.++=..+
T Consensus 725 ainhfiea~~--------~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~- 795 (1636)
T KOG3616|consen 725 AINHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFK- 795 (1636)
T ss_pred HHHHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhH-
Confidence 7777665422 1222334556678888888887776655556667778888888999999888886652111
Q ss_pred CchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHH
Q 002100 618 SYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAA 697 (967)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A 697 (967)
++ -..|...++|.+|-.+.+-+. ..++ ....++.++-+++.. --+...-.+|...|.++.|
T Consensus 796 ---da----------i~my~k~~kw~da~kla~e~~---~~e~-t~~~yiakaedldeh--gkf~eaeqlyiti~~p~~a 856 (1636)
T KOG3616|consen 796 ---DA----------IDMYGKAGKWEDAFKLAEECH---GPEA-TISLYIAKAEDLDEH--GKFAEAEQLYITIGEPDKA 856 (1636)
T ss_pred ---HH----------HHHHhccccHHHHHHHHHHhc---Cchh-HHHHHHHhHHhHHhh--cchhhhhheeEEccCchHH
Confidence 11 133556667776621111111 1100 011112222222211 0111222344555666666
Q ss_pred HHHHHHHH----------hcCCc-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhc------ccchHHHHHHHHHhhhcCC
Q 002100 698 MRSLRLAR----------NYSTS-EHEKLVYEGWILYDTGHREEALAKAEESISI------QRSFEAFFLKAYALADSSL 760 (967)
Q Consensus 698 ~~~l~~al----------~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~~~~la~~~~ 760 (967)
+..|.+.- +..|+ ..+....+|.-|...|+..+|...|-++-.. .... ..+..+|.++.+..
T Consensus 857 iqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s-~lw~dayriakteg 935 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKAS-ELWEDAYRIAKTEG 935 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhh-hhHHHHHHHHhccc
Confidence 66655431 22333 2466778888899999999998888765422 2211 12344555554332
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHH------HHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCH
Q 002100 761 NPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSV------YVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQR 834 (967)
Q Consensus 761 ~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~------~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~ 834 (967)
.......+.-+..+ ..........++..|.+ ....+-++-|.+.-+-+.+-.....+..+|..+...|++
T Consensus 936 g~n~~k~v~flwak----siggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~ 1011 (1636)
T KOG3616|consen 936 GANAEKHVAFLWAK----SIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKF 1011 (1636)
T ss_pred cccHHHHHHHHHHH----hhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccch
Confidence 21111111111000 00000011112222211 122333444444444444433444666666666666666
Q ss_pred HHHHHHHHHHHHHcc
Q 002100 835 KAAYDEMTKLIEKAR 849 (967)
Q Consensus 835 ~~A~~~~~~al~~~p 849 (967)
++|-+.|-.+|+++.
T Consensus 1012 edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 1012 EDASKHYVEAIKLNT 1026 (1636)
T ss_pred hhhhHhhHHHhhccc
Confidence 666666666666554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0012 Score=77.41 Aligned_cols=400 Identities=14% Similarity=0.043 Sum_probs=222.3
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
.+|++...+.++..|+...+....|.++.++|+.++|...++..-...+ +...+..+-.+|..++++++|...|++++.
T Consensus 26 kkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888877776666666 667777888888888888888888888888
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhH-hhHHHHHhhhcc------------------ccc-------cchHHHHH
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQA-DCWMQLYDRWSS------------------VDD-------IGSLAVVH 668 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A-~~~~~l~~~~~~------------------~d~-------~~al~~~~ 668 (967)
.+|+....+ .+=..|.+.+.|.+- ..=+++|..... .+. .-|-..++
T Consensus 106 ~~P~eell~-------~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 106 KYPSEELLY-------HLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred hCCcHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 888833222 112233333333321 111444432111 000 01222334
Q ss_pred HHHhcC-CCChHH-HHHHHHHHHHhcCHHHHHHHHHH-HHh-cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccc
Q 002100 669 HMLAND-PGKSLL-RFRQSLLLLRLNSQKAAMRSLRL-ARN-YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRS 744 (967)
Q Consensus 669 ~~l~~~-p~~~~~-~~~~g~~~~~~g~~~~A~~~l~~-al~-~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 744 (967)
+.++.. +-.... ....-.++..++++++|...+.. ..+ ..+.+......-...+...+++.+-.+...+++...++
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 444444 111111 11223455668899999998832 333 33333334445567778889999999999999988887
Q ss_pred h-HHHHHHHHHhhhcC-C-----CCCchHHHHHHHHHHhcCCCC---CCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 745 F-EAFFLKAYALADSS-L-----NPESSAYVIQLLEEALRCPSD---GLRKGQALNNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 745 ~-~~~~~~~~~la~~~-~-----~~~~~~~a~~~le~~~~~~~~---~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
+ ..++...+.+-... . ........-...+.+.+...+ +|.. +...+-.-+..-|+.+++...|-+-..
T Consensus 259 dy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~L--A~lel~kr~~~~gd~ee~~~~y~~kfg 336 (932)
T KOG2053|consen 259 DYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYL--ARLELDKRYKLIGDSEEMLSYYFKKFG 336 (932)
T ss_pred chHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHH--HHHHHHHHhcccCChHHHHHHHHHHhC
Confidence 4 22222222222111 1 111111222222333333333 2222 223333333466888887766644332
Q ss_pred cCc--------------HH------------------------HHHHHHHHHHHhCCH-----HHHHHHHHHHHH-----
Q 002100 815 IKH--------------TR------------------------AHQGLARVYHLKNQR-----KAAYDEMTKLIE----- 846 (967)
Q Consensus 815 ~~~--------------~~------------------------a~~~la~~~~~~g~~-----~~A~~~~~~al~----- 846 (967)
..+ .+ .+...-.+....|.+ +.-...+++...
T Consensus 337 ~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~g 416 (932)
T KOG2053|consen 337 DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKG 416 (932)
T ss_pred CCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcc
Confidence 110 00 111111222233321 111222222211
Q ss_pred --H----ccC---CHHHHHHHH------------ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHH
Q 002100 847 --K----ARN---NASAYEKRS------------EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAEL 905 (967)
Q Consensus 847 --~----~p~---~~~~~~~~~------------~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~ 905 (967)
. .|. ..+.+..++ ..+..-+|+-.++..+..+|.+...-..+-.+|...|-+..|.+.|
T Consensus 417 ls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y 496 (932)
T KOG2053|consen 417 LSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELY 496 (932)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHH
Confidence 1 111 222333332 1145678999999999999999999999999999999999999988
Q ss_pred HHHHhcCC-C-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 906 SRAIAFKP-D-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 906 ~kal~~~p-~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
... .+.. . ...-+.+-..+...|++..|...+...+...
T Consensus 497 ~tL-dIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy 537 (932)
T KOG2053|consen 497 KTL-DIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFY 537 (932)
T ss_pred Hhc-chHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 643 2211 1 1233334455566677777777777666554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.1e-05 Score=75.70 Aligned_cols=252 Identities=14% Similarity=0.118 Sum_probs=169.7
Q ss_pred HHhhcCChHHHHHHHHHHHHh-CchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcC----ChHHHHH
Q 002100 466 VMLEREEYKDAQNWFKAAVEA-GHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYC----SGKEKMM 540 (967)
Q Consensus 466 ~~~~~g~y~~A~~~f~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~----~~~~A~~ 540 (967)
-++-.|.|..++..-++.-.. +......++++.|..+|++...+..+...- .+++.. ......|. +.+.-+.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~lqA-vr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK--ATPLQA-VRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccccc--CChHHH-HHHHHHHhhCcchhHHHHH
Confidence 355567888887776665555 446667788888888887653332222111 111111 11111111 1122233
Q ss_pred HHHHhHhh--CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 541 DLNTATEL--DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 541 ~~~~al~l--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
.+.+.+.. ..++.-....-|.+++..+++++|++...+. .+.++...--.++.++.+.+-|...+++..+++.+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 33332221 2233345566678999999999999887662 25667777788999999999999999999988876
Q ss_pred chHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHH
Q 002100 619 YMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAM 698 (967)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~ 698 (967)
..... .|..|+.+...-+.. ..|.-+|+.+-+..|..+.....++.+.+.+++|++|.
T Consensus 170 ~tLtQ--------------------LA~awv~la~ggek~--qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe 227 (299)
T KOG3081|consen 170 ATLTQ--------------------LAQAWVKLATGGEKI--QDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAE 227 (299)
T ss_pred HHHHH--------------------HHHHHHHHhccchhh--hhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHH
Confidence 44332 233344444433333 33588888888878888999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHH-HHHHhcccchH
Q 002100 699 RSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKA-EESISIQRSFE 746 (967)
Q Consensus 699 ~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~-~~al~~~p~~~ 746 (967)
..++.++..++++++++.++-.+-..+|...++...+ .+....+|+.+
T Consensus 228 ~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 228 SLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 9999999999999999999999999999987776555 45555566544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.45 E-value=7e-07 Score=77.21 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=65.5
Q ss_pred hcCHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHH
Q 002100 691 LNSQKAAMRSLRLARNYSTS--EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYV 768 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a 768 (967)
+|+++.|+..++++++..|. +...++.+|.+++.+|++++|+..+++ ...++.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~---------------------- 58 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP---------------------- 58 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH----------------------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH----------------------
Confidence 57899999999999999885 566777789999999999999999988 66666443
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHH
Q 002100 769 IQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNA 812 (967)
Q Consensus 769 ~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~A 812 (967)
...+.+|.++..+|++++|++.|+++
T Consensus 59 ------------------~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 59 ------------------DIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp ------------------HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 56667799999999999999998875
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.7e-07 Score=78.93 Aligned_cols=78 Identities=22% Similarity=0.237 Sum_probs=69.0
Q ss_pred ChHHHHHHHHHhHhhCCC--CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPT--LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVR 610 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~ 610 (967)
+++.|+..++++++.+|+ +...++.+|.+++..|+|++|+..+++ .+.+| +....+.+|.++..+|+|++|++.++
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 449999999999999995 456788899999999999999999999 77888 77888899999999999999999998
Q ss_pred HH
Q 002100 611 AL 612 (967)
Q Consensus 611 ~a 612 (967)
++
T Consensus 83 ~~ 84 (84)
T PF12895_consen 83 KA 84 (84)
T ss_dssp HH
T ss_pred cC
Confidence 75
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.7e-06 Score=90.12 Aligned_cols=139 Identities=12% Similarity=0.009 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHH---HhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhcc--ccc
Q 002100 589 LELRAWISIALE---DYDGALRDVRALL---TLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSS--VDD 660 (967)
Q Consensus 589 ~~~la~~~~~~g---~~~~A~~~~~~al---~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~--~d~ 660 (967)
++.+|...+..+ ..+.|+..|.+++ .++|++..++. .++.++... .+..|.. .+-
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~------~lA~~h~~~-----------~~~g~~~~~~~~ 320 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYC------LLAECHMSL-----------ALHGKSELELAA 320 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHH------HHHHHHHHH-----------HHhcCCCchHHH
Confidence 377777776554 4567899999999 99999998883 223333221 1222322 223
Q ss_pred cchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 661 IGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESIS 740 (967)
Q Consensus 661 ~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 740 (967)
.+++....++++++|.++.+++.+|.++...++++.|+..|++|+.++|+.+.+++..|++....|+.++|++.++++++
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 002100 741 IQRS 744 (967)
Q Consensus 741 ~~p~ 744 (967)
++|.
T Consensus 401 LsP~ 404 (458)
T PRK11906 401 LEPR 404 (458)
T ss_pred cCch
Confidence 9994
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00017 Score=76.45 Aligned_cols=281 Identities=13% Similarity=0.054 Sum_probs=197.7
Q ss_pred ChHHHHHHHHHhHhhCCCCchh--HHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHH--HHhcCHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYP--YKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWIS--IALEDYDGALRDV 609 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~--~~~g~~~~A~~~~ 609 (967)
|...|...-.++-++-..+.++ +..-+..-+-.|+++.|.+-|+..+. +|....+-++|... ..+|+.+.|..+-
T Consensus 99 da~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yA 177 (531)
T COG3898 99 DASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYA 177 (531)
T ss_pred chHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHH
Confidence 4455555555555444444443 34456777788999999999987765 45433344444433 4579999999999
Q ss_pred HHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc---CCCC-----hHHH
Q 002100 610 RALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN---DPGK-----SLLR 681 (967)
Q Consensus 610 ~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~---~p~~-----~~~~ 681 (967)
+.+....|.-+.+.. ..-......|+|+.| |...+...+. .++. ..++
T Consensus 178 e~Aa~~Ap~l~WA~~------AtLe~r~~~gdWd~A------------------lkLvd~~~~~~vie~~~aeR~rAvLL 233 (531)
T COG3898 178 ERAAEKAPQLPWAAR------ATLEARCAAGDWDGA------------------LKLVDAQRAAKVIEKDVAERSRAVLL 233 (531)
T ss_pred HHHHhhccCCchHHH------HHHHHHHhcCChHHH------------------HHHHHHHHHHHhhchhhHHHHHHHHH
Confidence 999999999888872 223344566888888 4444432221 1211 1122
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCC
Q 002100 682 FRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLN 761 (967)
Q Consensus 682 ~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~ 761 (967)
...+.... .-+...|...-.++.++.|+...+-..-+..++..|+..++-..++.+-+..|... ++..+..
T Consensus 234 tAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--------ia~lY~~ 304 (531)
T COG3898 234 TAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--------IALLYVR 304 (531)
T ss_pred HHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--------HHHHHHH
Confidence 22222222 24588888899999999999988888899999999999999999999999998654 2222222
Q ss_pred CCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH-HHHHHHHHHHHh-CCHHHHHH
Q 002100 762 PESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR-AHQGLARVYHLK-NQRKAAYD 839 (967)
Q Consensus 762 ~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~-a~~~la~~~~~~-g~~~~A~~ 839 (967)
....+.++..++++.+..+-.+.........+...+..|++..|..--+.+....+.. ++..|+++.... |+-.++..
T Consensus 305 ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~ 384 (531)
T COG3898 305 ARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQ 384 (531)
T ss_pred hcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHH
Confidence 3333556666777666666677777888888888899999999999998888888776 777788888766 99999999
Q ss_pred HHHHHHHHc
Q 002100 840 EMTKLIEKA 848 (967)
Q Consensus 840 ~~~~al~~~ 848 (967)
++.++++--
T Consensus 385 wlAqav~AP 393 (531)
T COG3898 385 WLAQAVKAP 393 (531)
T ss_pred HHHHHhcCC
Confidence 999888743
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.8e-06 Score=74.22 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=9.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 592 RAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 592 la~~~~~~g~~~~A~~~~~~al~l 615 (967)
+|.++...|++++|+..++++++.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~ 29 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL 29 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc
Confidence 333333333333333333333333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.5e-05 Score=90.38 Aligned_cols=225 Identities=15% Similarity=0.098 Sum_probs=173.6
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCchh----HHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 663 SLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY-STSEH----EKLVYEGWILYDTGHREEALAKAEE 737 (967)
Q Consensus 663 al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~-~p~~~----~a~~~lg~~~~~~g~~~eA~~~~~~ 737 (967)
..+.|.+.+..+|+.+..|.+.-..+++.++.++|.+..++|+.. ++... ..|..+-+....-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 467888888889998888888888888889999999998888863 34322 2333333333344555566667777
Q ss_pred HHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc-C
Q 002100 738 SISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI-K 816 (967)
Q Consensus 738 al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~-~ 816 (967)
|-+....+ ..|..|..+|...+++++|.++|+..++. +
T Consensus 1523 Acqycd~~-----------------------------------------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~ 1561 (1710)
T KOG1070|consen 1523 ACQYCDAY-----------------------------------------TVHLKLLGIYEKSEKNDEADELLRLMLKKFG 1561 (1710)
T ss_pred HHHhcchH-----------------------------------------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence 66443211 46788889999999999999999999983 3
Q ss_pred -cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC--CHHHHHHHH----ccCChHHHHHHHHHhhccCCCCchHHHHHH
Q 002100 817 -HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARN--NASAYEKRS----EYCDRDMAKSDLSMATQLDPMRTYPYRYRA 889 (967)
Q Consensus 817 -~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~----~~~~~~~A~~~l~~al~l~p~~~~~~~~la 889 (967)
....|...|..++.+++-++|...+.+|++..|. +.......+ .+|+.+.+...|+-.+..+|...+.|.-+.
T Consensus 1562 q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1562 QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence 3459999999999999999999999999999997 444444444 249999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCChH---HHHHHHHHHHHc
Q 002100 890 AVLMDDHKEAEAIAELSRAIAFKPDLQ---LLHLRAAFHDSM 928 (967)
Q Consensus 890 ~~~~~~g~~~eAi~~~~kal~~~p~~~---~~~~~a~~~~~~ 928 (967)
..-++.|+.+.+...|++++.+.-.+. .++.+-.-|++.
T Consensus 1642 d~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 999999999999999999998775532 444444445544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.7e-06 Score=77.74 Aligned_cols=116 Identities=9% Similarity=-0.000 Sum_probs=92.2
Q ss_pred hchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhh
Q 002100 452 ESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSL 531 (967)
Q Consensus 452 ~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~ 531 (967)
-..+.....|..|.-++..|+|++|...|+-..-.+|....+.++. |.+++.++.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GL-------------------------aa~~Q~~k~ 86 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGL-------------------------AAVCQLKKQ 86 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH-------------------------HHHHHHHHH
Confidence 3455667889999999999999999999999888877444444444 556777777
Q ss_pred cCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 002100 532 YCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWIS 596 (967)
Q Consensus 532 y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~ 596 (967)
| ++|+..|..+..++++++.+.+..|.+++.+|+.+.|+..|..++. .|....+..+|..+
T Consensus 87 y---~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~ 147 (165)
T PRK15331 87 F---QKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVY 147 (165)
T ss_pred H---HHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHH
Confidence 7 9999999999999999999999999999999999999999999988 44333344444443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.3e-06 Score=80.31 Aligned_cols=106 Identities=18% Similarity=0.223 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCCh
Q 002100 456 KQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSG 535 (967)
Q Consensus 456 ~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~ 535 (967)
++.-+..-|.-+|..|+|++|..-|..||...|....-..+.+ |.+.+.+..++..+
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIl--------------------y~Nraaa~iKl~k~--- 150 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSIL--------------------YSNRAAALIKLRKW--- 150 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHH--------------------HhhhHHHHHHhhhH---
Confidence 3445566788999999999999999999998763322211111 22334444455544
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV 584 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 584 (967)
+.|+.+..+||+++|++..++..+|.+|.++.+|++|++.|.++++.+|
T Consensus 151 e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 151 ESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 5555555555555555555555555555555555555555555555555
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.3e-05 Score=79.77 Aligned_cols=203 Identities=14% Similarity=0.101 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
+..++..|...++.|++++|++.|+.+....|.. ..+.+.++.++++.+++++|+...++-+.+.|.++
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~-------- 105 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP-------- 105 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC--------
Confidence 4567888888889999999999999988887765 46788888899999999999999999988888544
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCH
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQR 834 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~ 834 (967)
....+++..|.+++.. +-+....+.-.
T Consensus 106 -----------------------------n~dY~~YlkgLs~~~~------------------------i~~~~rDq~~~ 132 (254)
T COG4105 106 -----------------------------NADYAYYLKGLSYFFQ------------------------IDDVTRDQSAA 132 (254)
T ss_pred -----------------------------ChhHHHHHHHHHHhcc------------------------CCccccCHHHH
Confidence 2334555555552211 01111122234
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 835 KAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 835 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
.+|+..|+..++..|+...+-..... +..+... ...--+..|..|.+.|.+..|+..++.+++..|+
T Consensus 133 ~~A~~~f~~~i~ryPnS~Ya~dA~~~-------i~~~~d~------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 133 RAAFAAFKELVQRYPNSRYAPDAKAR-------IVKLNDA------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD 199 (254)
T ss_pred HHHHHHHHHHHHHCCCCcchhhHHHH-------HHHHHHH------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc
Confidence 56788888999999985433221111 1111111 1222345788999999999999999999999887
Q ss_pred h----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHH
Q 002100 915 L----QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLEL 954 (967)
Q Consensus 915 ~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l 954 (967)
. +++..+..+|..+|-.++|...-+-.-.-.|++++...-
T Consensus 200 t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~~~~~~ 243 (254)
T COG4105 200 TSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQWYKDA 243 (254)
T ss_pred ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCcchhhh
Confidence 2 489999999999999999987654444444766655443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.8e-06 Score=77.40 Aligned_cols=112 Identities=16% Similarity=0.057 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCH
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKE 898 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~ 898 (967)
..++.-|...+..|+|++|++.|+.+....|. .|-...+.+.++.+|++.+++
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~---------------------------g~ya~qAqL~l~yayy~~~~y 63 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPF---------------------------GEYAEQAQLDLAYAYYKQGDY 63 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---------------------------CcccHHHHHHHHHHHHHccCH
Confidence 35556666666666666666666666666653 233345666777777777777
Q ss_pred HHHHHHHHHHHhcCCCh----HHHHHHHHHHHHcCC---------------hHHHHHHHHHHHhcCCCchhHHHHHHH
Q 002100 899 AEAIAELSRAIAFKPDL----QLLHLRAAFHDSMGD---------------HLHTQRDCEAALCLDPNHTDTLELYDK 957 (967)
Q Consensus 899 ~eAi~~~~kal~~~p~~----~~~~~~a~~~~~~g~---------------~~~A~~~~~~al~~~P~~~~~l~l~~r 957 (967)
++|+..+++.|+++|.. -+++.+|.++..+.+ ..+|..+|++.+...|+++-+.+...|
T Consensus 64 ~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~R 141 (142)
T PF13512_consen 64 EEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARKR 141 (142)
T ss_pred HHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 77777777777777773 277777777777766 789999999999999999988776655
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0038 Score=68.34 Aligned_cols=137 Identities=14% Similarity=0.128 Sum_probs=80.4
Q ss_pred hHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH-H----HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH
Q 002100 785 KGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT-R----AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS 859 (967)
Q Consensus 785 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~-~----a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 859 (967)
.+.....+|..-...+.++.|...|..|.+.-+. + +..++|.+|...++-+.-.+.++.. .|.+...+...
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq- 441 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQ- 441 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHH-
Confidence 3456777888888889999999999999984433 2 5667999999988765544443322 23210000000
Q ss_pred ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-------HHHHHHHHHHHcCChH
Q 002100 860 EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ-------LLHLRAAFHDSMGDHL 932 (967)
Q Consensus 860 ~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~-------~~~~~a~~~~~~g~~~ 932 (967)
+ ....+++-.|...+.++++.||...+.+.++.....+ .+..++.+....||..
T Consensus 442 --------------~-----l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~ 502 (629)
T KOG2300|consen 442 --------------R-----LEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTV 502 (629)
T ss_pred --------------H-----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 0 0012344455555666666666666666665542211 3445566666666666
Q ss_pred HHHHHHHHHHhc
Q 002100 933 HTQRDCEAALCL 944 (967)
Q Consensus 933 ~A~~~~~~al~~ 944 (967)
++....+-++.+
T Consensus 503 es~nmvrpamql 514 (629)
T KOG2300|consen 503 ESRNMVRPAMQL 514 (629)
T ss_pred HHHhccchHHHH
Confidence 666665555544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.2e-06 Score=88.44 Aligned_cols=100 Identities=12% Similarity=0.145 Sum_probs=68.8
Q ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 679 LLRFRQSLLL-LRLNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 679 ~~~~~~g~~~-~~~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
...+..+..+ +..|+|++|+..|+..++..|+. +.+++.+|.+|+..|++++|+..|+++++..|+..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~-------- 214 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP-------- 214 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc--------
Confidence 4455555544 45677777777777777777776 46777777777777777777777777777777433
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI 815 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~ 815 (967)
...++++.+|.++...|++++|+..|+++++.
T Consensus 215 -----------------------------~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 215 -----------------------------KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred -----------------------------chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33466667777777777777777777666663
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.002 Score=68.54 Aligned_cols=282 Identities=15% Similarity=0.082 Sum_probs=207.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHh----CchhHHHHHHHHHHhcCChHHHHHHHHHHHhccC----cchhHHHHHhhcC
Q 002100 462 QLGVVMLEREEYKDAQNWFKAAVEA----GHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYT----PVGWMYQERSLYC 533 (967)
Q Consensus 462 ~lG~~~~~~g~y~~A~~~f~~al~~----~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~----~~g~~~~~~~~y~ 533 (967)
.-|.+....||-..|.+.-.++-++ .+...+..-++.....|+++.|.+.|+..+..-. .+--.|.+-...+
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~G 168 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcc
Confidence 3566777788999999888887755 2244444556777888999999999998877321 1223444444455
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C-hh-----H--HHHHHHHHHHhcCHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S-PD-----C--LELRAWISIALEDYDG 604 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~-~~-----~--~~~la~~~~~~g~~~~ 604 (967)
+.+.|..+-+.+-+..|...+++...=......|+|+.|++..+......- . .. + +...+.. .-.-+...
T Consensus 169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s-~ldadp~~ 247 (531)
T COG3898 169 AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS-LLDADPAS 247 (531)
T ss_pred cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HhcCChHH
Confidence 779999999999999999999988888888999999999999987655433 1 11 1 1222222 22346888
Q ss_pred HHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHH
Q 002100 605 ALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQ 684 (967)
Q Consensus 605 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~ 684 (967)
|..+-.+++++.|+...+- ..-+..+...++..++ -..++.+-+.+|.- .+
T Consensus 248 Ar~~A~~a~KL~pdlvPaa------v~AAralf~d~~~rKg------------------~~ilE~aWK~ePHP-----~i 298 (531)
T COG3898 248 ARDDALEANKLAPDLVPAA------VVAARALFRDGNLRKG------------------SKILETAWKAEPHP-----DI 298 (531)
T ss_pred HHHHHHHHhhcCCccchHH------HHHHHHHHhccchhhh------------------hhHHHHHHhcCCCh-----HH
Confidence 9999999999999987776 5556777777777777 67778888888762 23
Q ss_pred HHHHHHhcCHHHHHHHHHHH---HhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCC
Q 002100 685 SLLLLRLNSQKAAMRSLRLA---RNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLN 761 (967)
Q Consensus 685 g~~~~~~g~~~~A~~~l~~a---l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~ 761 (967)
+.+|.+..--+.++.-++++ ..+.|++.+.....+..-+.-|++..|....+.+....|.-
T Consensus 299 a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre---------------- 362 (531)
T COG3898 299 ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE---------------- 362 (531)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh----------------
Confidence 44555555555555555544 45789999999999999999999999999999999888843
Q ss_pred CCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc-ccHHHHHHHHHHHhc
Q 002100 762 PESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC-EKLDLAADCYMNALN 814 (967)
Q Consensus 762 ~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~-g~~~~A~~~~~~Al~ 814 (967)
.+|..++.+-... |+-.++..++-++++
T Consensus 363 -------------------------s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 363 -------------------------SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred -------------------------hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3666777776655 888899999999988
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.1e-05 Score=91.11 Aligned_cols=231 Identities=13% Similarity=0.051 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-ccchHHHHHHHHHhhhcCCCCCchHHHHHHH
Q 002100 694 QKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISI-QRSFEAFFLKAYALADSSLNPESSAYVIQLL 772 (967)
Q Consensus 694 ~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~~~~la~~~~~~~~~~~a~~~l 772 (967)
-.+....|++.+.-+|+..-.|..+-.-..+.++.++|.+.+++|+.. ++.-+..-+
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKL---------------------- 1497 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKL---------------------- 1497 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHH----------------------
Confidence 344566888999999999999998888889999999999999999943 332110000
Q ss_pred HHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC
Q 002100 773 EEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR-AHQGLARVYHLKNQRKAAYDEMTKLIEKARNN 851 (967)
Q Consensus 773 e~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~-a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 851 (967)
...-+|.|+-..| |.-+.-.+.|++|.+...+. .|..|..+|...+++++|.+.|+..++...+.
T Consensus 1498 -----------NiWiA~lNlEn~y---G~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~ 1563 (1710)
T KOG1070|consen 1498 -----------NIWIAYLNLENAY---GTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT 1563 (1710)
T ss_pred -----------HHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch
Confidence 1112444444443 55667778999999965555 99999999999999999999999999999988
Q ss_pred HHHHHHHHcc----CChHHHHHHHHHhhccCCC--CchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHH
Q 002100 852 ASAYEKRSEY----CDRDMAKSDLSMATQLDPM--RTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAF 924 (967)
Q Consensus 852 ~~~~~~~~~~----~~~~~A~~~l~~al~l~p~--~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~ 924 (967)
...|...+.. .+-+.|...+.+|++.-|. +.......|.+-++.|+.+.+...|+-.+.-.|. .+.|.-+...
T Consensus 1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHH
Confidence 8888888843 5567888999999999998 7788888999999999999999999999999999 6788888999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 002100 925 HDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 925 ~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~ 960 (967)
-.+.|+.+-+...|++++++.=.-..+..++++-.+
T Consensus 1644 eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1644 EIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 999999999999999999988776677777766544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=72.41 Aligned_cols=70 Identities=27% Similarity=0.329 Sum_probs=63.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 002100 889 AAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKA 958 (967)
Q Consensus 889 a~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~ 958 (967)
..+|...+++++|++.++++++.+|+. ..+..+|.++..+|++++|+.+++++++..|++++...+..++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 568899999999999999999999994 5888899999999999999999999999999999888777654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0012 Score=77.36 Aligned_cols=227 Identities=14% Similarity=0.042 Sum_probs=115.7
Q ss_pred hcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchh
Q 002100 565 EENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWS 643 (967)
Q Consensus 565 ~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~ 643 (967)
..+++.+|+....+.++..| .+.+..+.|....++|.+++|...++..-...+++...
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~t--------------------- 79 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLT--------------------- 79 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHH---------------------
Confidence 34556666666666666666 45555666666666666666664444444444443333
Q ss_pred hHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 002100 644 QADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILY 723 (967)
Q Consensus 644 ~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~ 723 (967)
.-.+..+|.+++++++|...|++++..+|+ -+.++.+-.+|.
T Consensus 80 -------------------------------------Lq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayv 121 (932)
T KOG2053|consen 80 -------------------------------------LQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYV 121 (932)
T ss_pred -------------------------------------HHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHH
Confidence 333344444455555555555555555555 444444444444
Q ss_pred HcCChHHHHHHHHHHHhcccchHHHHHHHHHhh---hcCCCCCc----hHHHHHHHHHHhcCCCCCCchHHHHHHhHHHH
Q 002100 724 DTGHREEALAKAEESISIQRSFEAFFLKAYALA---DSSLNPES----SAYVIQLLEEALRCPSDGLRKGQALNNLGSVY 796 (967)
Q Consensus 724 ~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la---~~~~~~~~----~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~ 796 (967)
+.+.|.+-.+..-+..+..|+.+-+|.....+- ....+... ..-+....+..++....-...++.. ..-.+.
T Consensus 122 R~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL 200 (932)
T KOG2053|consen 122 REKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLIL 200 (932)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHH
Confidence 444444433333333334444443443332111 11111100 1112222333333331111112222 223566
Q ss_pred HhcccHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC
Q 002100 797 VDCEKLDLAADCYMNALN----IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNN 851 (967)
Q Consensus 797 ~~~g~~~~A~~~~~~Al~----~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 851 (967)
..++++++|.+.+..-+. ..+...-..-...+...++|.+-.+...++++.++++
T Consensus 201 ~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 788999999999955443 2222233345667888999999999999999999987
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.2e-06 Score=70.63 Aligned_cols=67 Identities=24% Similarity=0.225 Sum_probs=57.5
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 002100 892 LMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKA 958 (967)
Q Consensus 892 ~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~ 958 (967)
+++.|++++|+..|+++++.+|+ .++++.+|.+|.+.|++++|...+++++..+|+++.+..++.++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 35678999999999999999998 45888899999999999999999999999999998888877664
|
... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.3e-06 Score=73.53 Aligned_cols=88 Identities=28% Similarity=0.299 Sum_probs=76.5
Q ss_pred ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHcCChHHH
Q 002100 860 EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-----LQLLHLRAAFHDSMGDHLHT 934 (967)
Q Consensus 860 ~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-----~~~~~~~a~~~~~~g~~~~A 934 (967)
+.++.+.|++.|.+++.+.|.++.+|.++|..+.-+|+.++|+..+++++++..+ .+++..+|.+|..+|+-+.|
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 4478888888888888888899999999999999999999999999999998755 24888999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 002100 935 QRDCEAALCLDPN 947 (967)
Q Consensus 935 ~~~~~~al~~~P~ 947 (967)
..+|+.|-++...
T Consensus 135 R~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 135 RADFEAAAQLGSK 147 (175)
T ss_pred HHhHHHHHHhCCH
Confidence 9999998877654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-05 Score=81.70 Aligned_cols=112 Identities=12% Similarity=0.022 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHH
Q 002100 821 HQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE 900 (967)
Q Consensus 821 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 900 (967)
.++.|.-+++.|+|..|...|..-++..|+ .+-.+.+++.||.+++.+|+|++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~---------------------------s~~~~nA~yWLGe~~y~qg~y~~ 196 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN---------------------------STYTPNAYYWLGESLYAQGDYED 196 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------------------CcccchhHHHHHHHHHhcccchH
Confidence 667777888889999999999998888886 34557889999999999999999
Q ss_pred HHHHHHHHHhcCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 002100 901 AIAELSRAIAFKPD----LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 901 Ai~~~~kal~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~ 959 (967)
|...|..+++-.|+ +++++.+|.+...+|+.++|...|+++++.+|+.+.+.....++.
T Consensus 197 Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~~ 259 (262)
T COG1729 197 AAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVALK 259 (262)
T ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 99999999999888 579999999999999999999999999999999988766555553
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-05 Score=75.28 Aligned_cols=107 Identities=16% Similarity=0.034 Sum_probs=86.7
Q ss_pred HhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhcc
Q 002100 579 IIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSS 657 (967)
Q Consensus 579 al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~ 657 (967)
+..+.+ ..+..+..|.-+++.|++++|...|+-+...+|.++..+ .-++.++...++|++|
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~------~GLaa~~Q~~k~y~~A------------ 90 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYT------MGLAAVCQLKKQFQKA------------ 90 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH------HHHHHHHHHHHHHHHH------------
Confidence 344444 566778888888888888888888888888888887777 6677888888888888
Q ss_pred ccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 002100 658 VDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS 710 (967)
Q Consensus 658 ~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~ 710 (967)
+..|..+..++++++...+..|.+++.+|+...|+.+|+.++. .|.
T Consensus 91 ------i~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 91 ------CDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTE 136 (165)
T ss_pred ------HHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccc
Confidence 7888888888888888888999999999999999999999988 344
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=8e-05 Score=75.88 Aligned_cols=179 Identities=14% Similarity=0.035 Sum_probs=137.2
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC----ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhh
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFKV----SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHG 628 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 628 (967)
+.-++..|...++.|+|++|+..|+.+....| ...+...++..++..++|++|+...++-+.+.|.++.+-...
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~-- 111 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY-- 111 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH--
Confidence 45688899999999999999999999999888 467999999999999999999999999999999988765322
Q ss_pred hhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHH-----------------HHHHHHHHHHh
Q 002100 629 DNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLL-----------------RFRQSLLLLRL 691 (967)
Q Consensus 629 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~-----------------~~~~g~~~~~~ 691 (967)
++.++.+...-+...-| .+ -...|+..+...+...|+..-. -...|..|.+.
T Consensus 112 -YlkgLs~~~~i~~~~rD--------q~--~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr 180 (254)
T COG4105 112 -YLKGLSYFFQIDDVTRD--------QS--AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKR 180 (254)
T ss_pred -HHHHHHHhccCCccccC--------HH--HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666644321111000 00 0023578888889988875321 12568889999
Q ss_pred cCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccc
Q 002100 692 NSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEESISIQRS 744 (967)
Q Consensus 692 g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 744 (967)
|.+..|+.-++.+++..|+. .+++..+..+|+.+|-.++|...-.-.-...|+
T Consensus 181 ~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 181 GAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred cChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 99999999999999987764 468889999999999999988765544333443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0067 Score=73.25 Aligned_cols=433 Identities=19% Similarity=0.192 Sum_probs=231.8
Q ss_pred HHhhhchHHHHHHHHHHHHHh-hcCChHHHHHHHHHHHHhC--c------hhHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 002100 448 ESATESWQKQLAFHQLGVVML-EREEYKDAQNWFKAAVEAG--H------IYSLVGVARTKFKRGHKYSAYKLMNSLISD 518 (967)
Q Consensus 448 ~~~~~~~~~a~a~~~lG~~~~-~~g~y~~A~~~f~~al~~~--~------~~a~~~la~~~~~~g~~~~A~~~l~~~i~~ 518 (967)
+....+.+.+.+++++|.+++ +..++++|+.++++++.+. + .....-+++++.+.+... |...+++.++.
T Consensus 50 ~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~ 128 (608)
T PF10345_consen 50 QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIED 128 (608)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHH
Confidence 344456788999999999999 6789999999999998884 2 223445677777777666 77777776664
Q ss_pred cCc---chhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC---Ch----hH
Q 002100 519 YTP---VGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV---SP----DC 588 (967)
Q Consensus 519 ~~~---~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~----~~ 588 (967)
+.. ..|.+.-+ +.+...+...+++..|++.++....... ++ -+
T Consensus 129 ~~~~~~~~w~~~fr---------------------------ll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 129 SETYGHSAWYYAFR---------------------------LLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HhccCchhHHHHHH---------------------------HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 433 11111110 1112233333788888888887776542 22 24
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCchHHhhhhhhhhhHhh--hHHHhhchhhHhhHHHHHhh------
Q 002100 589 LELRAWISIALEDYDGALRDVRALLTL------DPSYMMFYGQLHGDNLVET--LQPLVQQWSQADCWMQLYDR------ 654 (967)
Q Consensus 589 ~~~la~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~~~~~~~~~~--l~~~~~~~~~A~~~~~l~~~------ 654 (967)
....+.+....+..+++++..+++... +|+..... +....++-. .....+++..+...++..+.
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~q--L~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~ 259 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQ--LKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIK 259 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 444566777777777788777776443 22221111 001122222 22333343344322221110
Q ss_pred ----hccccccchHHHHH-----------HHHhcCCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------
Q 002100 655 ----WSSVDDIGSLAVVH-----------HMLANDPG---KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS------ 710 (967)
Q Consensus 655 ----~~~~d~~~al~~~~-----------~~l~~~p~---~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~------ 710 (967)
|...++++.+..-. -.+.--|. ....|+.-|......+..+.|.+.++++++.-.+
T Consensus 260 ~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~ 339 (608)
T PF10345_consen 260 KSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSP 339 (608)
T ss_pred cCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCC
Confidence 22222222221100 00000000 0123444566666667666777777766542111
Q ss_pred -h-------------------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHH
Q 002100 711 -E-------------------HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQ 770 (967)
Q Consensus 711 -~-------------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~ 770 (967)
. ...+++.+++..-.+++..|....+.+.......+..
T Consensus 340 ~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~---------------------- 397 (608)
T PF10345_consen 340 SAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSK---------------------- 397 (608)
T ss_pred CCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccc----------------------
Confidence 0 0123455666666777777777776655433211100
Q ss_pred HHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHH--------HHhccCcHH-----HHHHHHHHHHHhCCHHHH
Q 002100 771 LLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYM--------NALNIKHTR-----AHQGLARVYHLKNQRKAA 837 (967)
Q Consensus 771 ~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~--------~Al~~~~~~-----a~~~la~~~~~~g~~~~A 837 (967)
.........++..|..+...|+.+.|+..|. .+...+... +..++..++...+.....
T Consensus 398 ---------~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~ 468 (608)
T PF10345_consen 398 ---------LYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDS 468 (608)
T ss_pred ---------hhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchh
Confidence 0011234678888999999999999999998 333333322 666777777766654442
Q ss_pred HHHHHHHHH-Hcc---CCHHHHHHHH------cc-----CChHHHHHHHHHhhccC-------CCCchHHHHHHHHHHhC
Q 002100 838 YDEMTKLIE-KAR---NNASAYEKRS------EY-----CDRDMAKSDLSMATQLD-------PMRTYPYRYRAAVLMDD 895 (967)
Q Consensus 838 ~~~~~~al~-~~p---~~~~~~~~~~------~~-----~~~~~A~~~l~~al~l~-------p~~~~~~~~la~~~~~~ 895 (967)
...+..+++ +.| +....++..+ .+ -...++...+..+++.. --...++..++..++ .
T Consensus 469 ~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~ 547 (608)
T PF10345_consen 469 ESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-E 547 (608)
T ss_pred hhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-c
Confidence 222333333 222 1111111111 01 22346666666655543 111234556777777 7
Q ss_pred CCHHHHHHHHHHHHhcC---CChH--HH-----HHHHHHHHHcCChHHHHHHHHHHH
Q 002100 896 HKEAEAIAELSRAIAFK---PDLQ--LL-----HLRAAFHDSMGDHLHTQRDCEAAL 942 (967)
Q Consensus 896 g~~~eAi~~~~kal~~~---p~~~--~~-----~~~a~~~~~~g~~~~A~~~~~~al 942 (967)
|+..+......++.... |+.. .| ..++..+...|+.++|....++.-
T Consensus 548 ~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 548 GDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 88888777766666543 3312 33 235667889999999988877654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00038 Score=75.76 Aligned_cols=464 Identities=14% Similarity=0.093 Sum_probs=249.7
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHh-Cch-----hHH-HHHHHHHHhcCChHHHHHHHHHHHh---c--cCcc
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEA-GHI-----YSL-VGVARTKFKRGHKYSAYKLMNSLIS---D--YTPV 522 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~-~~~-----~a~-~~la~~~~~~g~~~~A~~~l~~~i~---~--~~~~ 522 (967)
+....+|+.|.+++...+|-+|++.-...+.. .+. .+. ...-.++....+.++|+.++.-+.+ . -...
T Consensus 98 ~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~ 177 (696)
T KOG2471|consen 98 QGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLV 177 (696)
T ss_pred cchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 34677889999999999999999877666554 221 011 1111222333344445444332221 0 0001
Q ss_pred hhHHHHHhhc--CChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHh
Q 002100 523 GWMYQERSLY--CSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIAL 599 (967)
Q Consensus 523 g~~~~~~~~y--~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~ 599 (967)
|..--..... .....|...+- -.+|. ..+..+.-..|....+...+....+.+..+.. ++.++.+.++.++..
T Consensus 178 gn~~~~nn~~kt~s~~aAe~s~~---~a~~k-~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~ 253 (696)
T KOG2471|consen 178 GNHIPANNLLKTLSPSAAERSFS---TADLK-LELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAH 253 (696)
T ss_pred ccccchhhhcccCCcchhcccch---hhccc-hhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHh
Confidence 1000000000 00011111110 01111 12223334455677788888888888887777 789999999999999
Q ss_pred cCHHHHHHHHHHH-HHhCCCchHHh--hhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHh----
Q 002100 600 EDYDGALRDVRAL-LTLDPSYMMFY--GQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLA---- 672 (967)
Q Consensus 600 g~~~~A~~~~~~a-l~l~p~~~~~~--~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~---- 672 (967)
|++.+|.+.+... +...|...... .+-....++|-+..+++.|.-+ ...|.++++
T Consensus 254 gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~------------------~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 254 GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQAS------------------SVLFLKALRNSCS 315 (696)
T ss_pred cchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHH------------------HHHHHHHHHHHHH
Confidence 9999999876543 22233311110 0000125678888888888777 555665553
Q ss_pred ---c--CC---------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHc---CChHHH----
Q 002100 673 ---N--DP---------GKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDT---GHREEA---- 731 (967)
Q Consensus 673 ---~--~p---------~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~---g~~~eA---- 731 (967)
. .| ..-.+.|+.|..|+..|++..|.++|.++....-.+|..|..++.+.... |-.++-
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~ 395 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSL 395 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCc
Confidence 1 12 23467889999999999999999999999999999999999999876532 111111
Q ss_pred ------------------------------------------HHHHHHHHhcccchHHHHHHHHHhhhcC----CCCC--
Q 002100 732 ------------------------------------------LAKAEESISIQRSFEAFFLKAYALADSS----LNPE-- 763 (967)
Q Consensus 732 ------------------------------------------~~~~~~al~~~p~~~~~~~~~~~la~~~----~~~~-- 763 (967)
.-++..++-+-|+.. .+.+....+... ..++
T Consensus 396 s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q-~~~~~~~~a~ns~~~g~~~e~~ 474 (696)
T KOG2471|consen 396 SRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQ-DLGSILSVAMNSTKEGSSSEHE 474 (696)
T ss_pred ccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhh-cchhhhhhhccccccCCCCcCC
Confidence 111111111111000 000000000000 0000
Q ss_pred ---------------------chHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc-CcHHHH
Q 002100 764 ---------------------SSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI-KHTRAH 821 (967)
Q Consensus 764 ---------------------~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~-~~~~a~ 821 (967)
.+..+.+-++. .....+.+.+.+-...|+.-.|+..-++.+.. +-..++
T Consensus 475 e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leN---------m~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS~~~ 545 (696)
T KOG2471|consen 475 EGNTTTDSKEHKGDMSQEIPQSSPSAFEDLEN---------MRQAIFANMAYVELELGDPIKALSAATKLLQLADLSKIY 545 (696)
T ss_pred CCCCCcchhcCCCCCCccCCCCCcchHHHHHH---------HHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhhhhhHH
Confidence 00011111111 11235566777888999999999999999883 333455
Q ss_pred HHHHHHH-----HHhCCHHHHHHHHHHHHHHccCCHHHHHHHH--c-cCChHHHHHHH-HHhhccC-----CCCchHHHH
Q 002100 822 QGLARVY-----HLKNQRKAAYDEMTKLIEKARNNASAYEKRS--E-YCDRDMAKSDL-SMATQLD-----PMRTYPYRY 887 (967)
Q Consensus 822 ~~la~~~-----~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~--~-~~~~~~A~~~l-~~al~l~-----p~~~~~~~~ 887 (967)
.-||.+| ..+++..+|...+...+--+.+....|+... . .+.. ++++-- .+.-+.. ......+++
T Consensus 546 kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~-e~l~~s~~r~~q~~~~sv~~Ar~v~~~n 624 (696)
T KOG2471|consen 546 KFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHT-ETLDPSTGRTRQSVFLSVEEARGVLFAN 624 (696)
T ss_pred HHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccc-cccCCcCCCCcccccCCHHHHhHHHHHH
Confidence 5555544 4555555555554331111101000011000 0 0000 000000 0000111 112345778
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCchhH
Q 002100 888 RAAVLMDDHKEAEAIAELSRAIAFKPD---LQLLHLRAAFHDSMGDHLHTQRDCEAALCL--DPNHTDT 951 (967)
Q Consensus 888 la~~~~~~g~~~eAi~~~~kal~~~p~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~~ 951 (967)
+|.+|.-+|++++|...+.+|..+-+. +++....-.+-..+|+...|+..+++.--+ -|.+.++
T Consensus 625 La~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~~~~v~~~~ev 693 (696)
T KOG2471|consen 625 LAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTHVSFVPGRLEV 693 (696)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcccccccCcchhh
Confidence 999999999999999999999988774 456666677778999999999999887433 2554443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.4e-05 Score=71.70 Aligned_cols=97 Identities=20% Similarity=0.142 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHh
Q 002100 713 EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNL 792 (967)
Q Consensus 713 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~l 792 (967)
.+++.+|+++-..|+.++|+..|++++....+.. ....++..+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-------------------------------------~~~~a~i~l 44 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA-------------------------------------DRRRALIQL 44 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-------------------------------------HHHHHHHHH
Confidence 4567777777777777777777777776544222 222566777
Q ss_pred HHHHHhcccHHHHHHHHHHHhcc--C---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002100 793 GSVYVDCEKLDLAADCYMNALNI--K---HTRAHQGLARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 793 g~~~~~~g~~~~A~~~~~~Al~~--~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 846 (967)
|..+...|++++|+..+++++.. + +......+|.++...|++++|+..+-.++.
T Consensus 45 astlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 45 ASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777777763 2 223555677777777777777777766554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.8e-05 Score=71.34 Aligned_cols=100 Identities=19% Similarity=0.087 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHh
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYAL 755 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~l 755 (967)
.+.|.++.++-..|+.++|+..|++++...... ..++..+|..+..+|++++|+..+++++...|+.+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~--------- 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE--------- 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---------
Confidence 467899999999999999999999999975443 57899999999999999999999999998877532
Q ss_pred hhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc
Q 002100 756 ADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI 815 (967)
Q Consensus 756 a~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~ 815 (967)
........++.++...|++++|+..+-.++..
T Consensus 73 ----------------------------~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 73 ----------------------------LNAALRVFLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred ----------------------------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 12245556778889999999999999877753
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3e-05 Score=69.33 Aligned_cols=107 Identities=16% Similarity=0.086 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCC
Q 002100 681 RFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSL 760 (967)
Q Consensus 681 ~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~ 760 (967)
+-..|..+...|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|+..+++++++.....
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t-------------- 111 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT-------------- 111 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc--------------
Confidence 345688888999999999999999999999999999999999999999999999999998765221
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHH
Q 002100 761 NPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQG 823 (967)
Q Consensus 761 ~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~ 823 (967)
....+++...|.+|..+|+.+.|...|+.|-+++...+...
T Consensus 112 ----------------------rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~Q 152 (175)
T KOG4555|consen 112 ----------------------RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQ 152 (175)
T ss_pred ----------------------hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHH
Confidence 12337899999999999999999999999998887654433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.1e-06 Score=68.71 Aligned_cols=64 Identities=20% Similarity=0.296 Sum_probs=54.5
Q ss_pred HHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 560 AILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 560 a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
..+|...++|++|++.+++++..+| ++..+..+|.++..+|++++|+..++++++.+|++....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4677888888888888888888888 888888888888888888888888888888888877665
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.9e-06 Score=68.56 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=41.1
Q ss_pred HhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 564 VEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 564 ~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
+..|++++|++.|++++..+| +.++++.+|.+|...|++++|...+++++..+|+++..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 456677777777777777777 677777777777777777777777777777777765444
|
... |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.4e-05 Score=85.74 Aligned_cols=76 Identities=22% Similarity=0.172 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
+..+++++..+|.+..++..++..++..++++.|+...+++++..|++.+.|+.|+.+|...|++++|+..+...-
T Consensus 220 I~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 220 IRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5666666666666677777788889999999999999999999999999999999999999999999998777443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-06 Score=86.22 Aligned_cols=110 Identities=22% Similarity=0.220 Sum_probs=68.2
Q ss_pred eEEEehhHHHhccCHHHHHhhcCCCCCCc---------cceEEeccCCCCHHHH-HHHHHhHcCCCCCCCCH-----HHH
Q 002100 265 DEIRCVRYKIASLSRPFRTMLYGGFIESR---------REKVNFSQNGISVEAM-RAAEEFSRTKMLDSFDP-----RLV 329 (967)
Q Consensus 265 ~~~~~hr~vLa~~S~~F~~~~~~~~~e~~---------~~~i~~~~~~~~~~~~-~~~l~~~Yt~~~~~~~~-----~~~ 329 (967)
++|+|||.|.|+||++||.++....+|.. ...|.+++ -|=|..| -.+++++||++++ .+. +.|
T Consensus 261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE-~I~PkafA~i~lhclYTD~lD-lSl~hkce~Si 338 (401)
T KOG2838|consen 261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDE-LIFPKAFAPIFLHCLYTDRLD-LSLAHKCEDSI 338 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechh-hhcchhhhhhhhhhheecccc-hhhcccCCccc
Confidence 36999999999999999999986554432 23677765 4555555 4678999999994 221 111
Q ss_pred HHHHHHhchhChHHHHHHHHHHHH-----hhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhh
Q 002100 330 LELLSFANRFCCEELKSACDSYLA-----SMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPC 391 (967)
Q Consensus 330 ~~ll~~A~~~~~~~l~~~c~~~l~-----~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~ 391 (967)
-.|-++ +.|. ..+. ...++.++++|..+....|...|..+|.++...
T Consensus 339 gSLSea--------------kAitnaGkpn~~q-aaeAleL~~IAlFfEfemLaQa~e~Vir~acaa 390 (401)
T KOG2838|consen 339 GSLSEA--------------KAITNAGKPNDLQ-AAEALELIEIALFFEFEMLAQACEDVIRKACAA 390 (401)
T ss_pred ccHHHH--------------HHHHcCCCCchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 111000 0011 0011 345667777777777777777777777766653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.6e-05 Score=84.71 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=65.5
Q ss_pred HHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhh
Q 002100 796 YVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMAT 875 (967)
Q Consensus 796 ~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al 875 (967)
....++++.|++.|++..+.+| .+...+|+++...++..+|++.+.+++...|
T Consensus 179 l~~t~~~~~ai~lle~L~~~~p-ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-------------------------- 231 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERDP-EVAVLLARVYLLMNEEVEAIRLLNEALKENP-------------------------- 231 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcCC-cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--------------------------
Confidence 3344556666666666555543 2444466666666666666655555555555
Q ss_pred ccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 876 QLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAA 941 (967)
Q Consensus 876 ~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~a 941 (967)
.+...+...|..++..++++.|++..+++.+..|+ ...|+.++.+|..+|++++|+..++.+
T Consensus 232 ----~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 232 ----QDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 44555555555566666666666666666666665 345666666666666666665555433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.2e-05 Score=71.22 Aligned_cols=118 Identities=11% Similarity=0.047 Sum_probs=89.2
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC----ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhh
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFKV----SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHG 628 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 628 (967)
+..++..|...+..|+|++|++.|+.+....| ...+...++.+|+..++|++|+..+++-++++|.++.+-...
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~-- 87 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY-- 87 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH--
Confidence 45688899999999999999999999999988 478999999999999999999999999999999998766432
Q ss_pred hhhHhhhHHHhhchhhHhhHHHHHhhhcccc---ccchHHHHHHHHhcCCCChH
Q 002100 629 DNLVETLQPLVQQWSQADCWMQLYDRWSSVD---DIGSLAVVHHMLANDPGKSL 679 (967)
Q Consensus 629 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d---~~~al~~~~~~l~~~p~~~~ 679 (967)
+.+|+.+.....-. +..++ ...-| ...|+..|.+.+...|+...
T Consensus 88 -Y~~gL~~~~~~~~~----~~~~~--~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 88 -YMRGLSYYEQDEGS----LQSFF--RSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred -HHHHHHHHHHhhhH----Hhhhc--ccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 77777777643300 00011 00000 12357788888888887544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.3e-05 Score=77.98 Aligned_cols=106 Identities=17% Similarity=0.085 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHH
Q 002100 715 LVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGS 794 (967)
Q Consensus 715 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~ 794 (967)
.|..|.-++..|+|.+|...|..-++..|+.. ....++++||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~-------------------------------------~~~nA~yWLGe 186 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST-------------------------------------YTPNAYYWLGE 186 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-------------------------------------ccchhHHHHHH
Confidence 66667777777777777777777777777443 33467777788
Q ss_pred HHHhcccHHHHHHHHHHHhc--cC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHH
Q 002100 795 VYVDCEKLDLAADCYMNALN--IK---HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEK 857 (967)
Q Consensus 795 ~~~~~g~~~~A~~~~~~Al~--~~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 857 (967)
+++.+|+|+.|...|..+++ ++ -+++++.||.+...+|+.++|...|+++++..|+...+...
T Consensus 187 ~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 187 SLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 88888888888877777777 22 23578888888888888888888888888888876555433
|
|
| >KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.9e-05 Score=78.29 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=83.8
Q ss_pred EEEEEcCeEEEehhHHHhccCHHHHHhhcCCCC--CCccceEEeccCCCCHHHHHHHHHhHcCCCCC-CCCHHHHHHHHH
Q 002100 258 MSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFI--ESRREKVNFSQNGISVEAMRAAEEFSRTKMLD-SFDPRLVLELLS 334 (967)
Q Consensus 258 v~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~--e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~-~~~~~~~~~ll~ 334 (967)
|.+-|||..|..+|.-|.-...+|++||.+.+. -..+..|-|. =||.-|..+|.||..|.+. .-+...+.+|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID---RSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID---RSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec---CChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 567899999999999999999999999998863 3344578886 4999999999999988884 335567889999
Q ss_pred HhchhChHHHHHHHHHHHHhhCC
Q 002100 335 FANRFCCEELKSACDSYLASMVS 357 (967)
Q Consensus 335 ~A~~~~~~~l~~~c~~~l~~~~~ 357 (967)
=|.+|.++.|++.|...+.....
T Consensus 84 EA~fYlL~~Lv~~C~~~i~~~~~ 106 (230)
T KOG2716|consen 84 EAEFYLLDGLVELCQSAIARLIR 106 (230)
T ss_pred HHHHhhHHHHHHHHHHHhhhccc
Confidence 99999999999999999988865
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.8e-05 Score=87.19 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=56.5
Q ss_pred cCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 877 LDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ----LLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 877 l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~----~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
.+|+++.+++++|.+|+..|+|++|+..|+++++++|++. +++++|.+|..+|++++|+.++++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678888888888888888888888888888888888843 4888888888888888888888888886
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0037 Score=63.18 Aligned_cols=218 Identities=17% Similarity=0.171 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------------Cch-----hH-HHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYS-------------TSE-----HE-KLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~-------------p~~-----~~-a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
.+|..+-.++.++...++|...++..-+.+ |+. |- .....|.+....|+..+.+.-+....
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~ 149 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLK 149 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 456666677778888888887666554443 221 11 12344677788899988887776654
Q ss_pred hcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH-
Q 002100 740 SIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT- 818 (967)
Q Consensus 740 ~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~- 818 (967)
..-. +....-+....++++ +++.++ +.....+.+..++.-.|+|.-.++.+.+.++.+++
T Consensus 150 ~~V~-------~ii~~~e~~~~~ESs---v~lW~K---------Rl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~ 210 (366)
T KOG2796|consen 150 TVVS-------KILANLEQGLAEESS---IRLWRK---------RLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ 210 (366)
T ss_pred HHHH-------HHHHHHHhccchhhH---HHHHHH---------HHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc
Confidence 2211 111111222222222 222222 22356777888899999999999999999996643
Q ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC------CHHHHHHHH-cc---CChHHHHHHHHHhhccCCCCchHHH
Q 002100 819 --RAHQGLARVYHLKNQRKAAYDEMTKLIEKARN------NASAYEKRS-EY---CDRDMAKSDLSMATQLDPMRTYPYR 886 (967)
Q Consensus 819 --~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~-~~---~~~~~A~~~l~~al~l~p~~~~~~~ 886 (967)
.....|+++.++-|+.+.|..+++++-+.+.. +..+..+.+ .+ +++..|...|.+++..||.++.+..
T Consensus 211 ~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~N 290 (366)
T KOG2796|consen 211 EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANN 290 (366)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhc
Confidence 37788999999999999999999966544332 122222222 12 7889999999999999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 002100 887 YRAAVLMDDHKEAEAIAELSRAIAFKPDL 915 (967)
Q Consensus 887 ~la~~~~~~g~~~eAi~~~~kal~~~p~~ 915 (967)
+.|.+++..|+..+|++.++.+.+..|.+
T Consensus 291 nKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 291 NKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 99999999999999999999999999984
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.7e-05 Score=85.83 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=64.7
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-Chh---HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPD---CLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~---~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
.+|+++.+++++|.+|+..|+|++|+..|+++++++| +.+ +|+++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999999999 564 5999999999999999999999999998
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00091 Score=64.04 Aligned_cols=148 Identities=15% Similarity=0.166 Sum_probs=95.7
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhc-cCC-ChhHHHHHHHHHHHhcCHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIG-FKV-SPDCLELRAWISIALEDYDGALRDVRA 611 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~ 611 (967)
|++.......+.++..|+.. -.+.+|..+.+.|++.+|...|++++. +.. ++..+..+++..+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 45555555555555555543 244566666666666666666666653 222 555666666666666666666666666
Q ss_pred HHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 002100 612 LLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRL 691 (967)
Q Consensus 612 al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~ 691 (967)
+.+.+|... .+......|..|..+
T Consensus 150 l~e~~pa~r--------------------------------------------------------~pd~~Ll~aR~laa~ 173 (251)
T COG4700 150 LMEYNPAFR--------------------------------------------------------SPDGHLLFARTLAAQ 173 (251)
T ss_pred HhhcCCccC--------------------------------------------------------CCCchHHHHHHHHhc
Confidence 655554421 233344557777788
Q ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 692 NSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 692 g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
|.+.+|...|+.++...|. +++..+.+..+..+|+.++|...+....
T Consensus 174 g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 174 GKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred CCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 8888888888888888886 6677777888888888888877765544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.4e-05 Score=65.51 Aligned_cols=64 Identities=28% Similarity=0.375 Sum_probs=55.4
Q ss_pred hHHHHHHhHHHHHhcccHHHHHHHHHHHhcc----C--cH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002100 785 KGQALNNLGSVYVDCEKLDLAADCYMNALNI----K--HT---RAHQGLARVYHLKNQRKAAYDEMTKLIEKA 848 (967)
Q Consensus 785 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~----~--~~---~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 848 (967)
.+.+++++|.+|..+|++++|+++|+++++. + ++ .++.++|.++..+|++++|++.+++++++.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4578999999999999999999999999973 2 22 278999999999999999999999999864
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0009 Score=67.48 Aligned_cols=189 Identities=13% Similarity=0.094 Sum_probs=118.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHH
Q 002100 496 ARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITE 575 (967)
Q Consensus 496 a~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~ 575 (967)
|.+....|+..+...-+..+.......-.....+. ..+..+..+++-+ ....+.+..++...|.|.-.+..
T Consensus 129 Ae~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~---~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~ 199 (366)
T KOG2796|consen 129 AELQQYLGNPQESLDRLHKLKTVVSKILANLEQGL---AEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDA 199 (366)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhcc---chhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHH
Confidence 55666677777766665555442222111111111 1133344444433 24567778899999999999999
Q ss_pred HHHHhccCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHh
Q 002100 576 INRIIGFKV--SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYD 653 (967)
Q Consensus 576 ~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~ 653 (967)
+.++++.+| ++.....+|.+..+.||.+.|..+|+.+-+.+..-....+.+.-..+.+.++...++|..|
T Consensus 200 ~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a-------- 271 (366)
T KOG2796|consen 200 YHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEA-------- 271 (366)
T ss_pred HHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHH--------
Confidence 999999996 8999999999999999999999999866533211111110000013334444444455555
Q ss_pred hhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002100 654 RWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE 711 (967)
Q Consensus 654 ~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~ 711 (967)
...+.+.++.||.++.+..+.+.+++..|+...|++.++.+++..|..
T Consensus 272 ----------~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 272 ----------HRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred ----------HHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 566666777777777777777777777777777777777777776653
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.5e-05 Score=67.79 Aligned_cols=74 Identities=24% Similarity=0.358 Sum_probs=58.6
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHH
Q 002100 709 TSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQA 788 (967)
Q Consensus 709 p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a 788 (967)
|+...++.++|.+|..+|++++|+..|++++++..... .+.+..+.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---------------------------------~~~~~~a~~ 48 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG---------------------------------DDHPDTANT 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---------------------------------THHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC---------------------------------CCCHHHHHH
Confidence 45567899999999999999999999999996622111 111233578
Q ss_pred HHHhHHHHHhcccHHHHHHHHHHHhcc
Q 002100 789 LNNLGSVYVDCEKLDLAADCYMNALNI 815 (967)
Q Consensus 789 ~~~lg~~~~~~g~~~~A~~~~~~Al~~ 815 (967)
+.++|.++...|++++|+++|++++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999864
|
... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0017 Score=64.49 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=32.4
Q ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhccCcH--------HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHcc
Q 002100 788 ALNNLGSVYVDCEKLDLAADCYMNALNIKHT--------RAHQGLARVYHLK-NQRKAAYDEMTKLIEKAR 849 (967)
Q Consensus 788 a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--------~a~~~la~~~~~~-g~~~~A~~~~~~al~~~p 849 (967)
.|...+.+|... +..+|+.++++++++-.. ..+..+|.+|... .++++|+..|+++-+...
T Consensus 76 ~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 76 TYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred HHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 333344444333 566666666666552111 1344566666654 667777777766665443
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=2e-05 Score=86.29 Aligned_cols=102 Identities=23% Similarity=0.218 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
+.++.|+..|.+|++++|+.+..+.+++.++.+.+++..|+..+.+|++.+|.. .+|+.+|.+...++.+.+|+.+|++
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK 97 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999995 4999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHhhhh
Q 002100 941 ALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 941 al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
...+.|+++.+...+...+...+
T Consensus 98 ~~~l~Pnd~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 98 VKKLAPNDPDATRKIDECNKIVS 120 (476)
T ss_pred hhhcCcCcHHHHHHHHHHHHHHH
Confidence 99999999999887776665543
|
|
| >KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.4e-05 Score=62.01 Aligned_cols=81 Identities=28% Similarity=0.418 Sum_probs=65.1
Q ss_pred EEEEE-cCeEEEehhHHHhccCHHHHHhhcCC--CCCCccceEEeccCCCCHHHHHHHHHhH-----cCCC---CC--CC
Q 002100 258 MSFCI-GNDEIRCVRYKIASLSRPFRTMLYGG--FIESRREKVNFSQNGISVEAMRAAEEFS-----RTKM---LD--SF 324 (967)
Q Consensus 258 v~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~--~~e~~~~~i~~~~~~~~~~~~~~~l~~~-----Yt~~---~~--~~ 324 (967)
|+++- +|.+|-..| -+|.-|+-.|+||+|+ +.|...++|.+++ |...+++.+.+|+ ||+. ++ ++
T Consensus 19 VkLvS~Ddhefiikr-e~AmtSgTiraml~gpg~~se~~~n~v~f~d--i~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~I 95 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKR-EHAMTSGTIRAMLSGPGVFSEAEKNEVYFRD--IPSHILEKVCEYLAYKVRYTNSSTEIPEFDI 95 (112)
T ss_pred eEeecCCCcEEEEee-hhhhhhhHHHHHHcCCccccccccceEEecc--chHHHHHHHHHHhhheeeeccccccCCCCCC
Confidence 55655 455555554 5678899999999986 5566778999988 9999999999998 6665 22 78
Q ss_pred CHHHHHHHHHHhchhCh
Q 002100 325 DPRLVLELLSFANRFCC 341 (967)
Q Consensus 325 ~~~~~~~ll~~A~~~~~ 341 (967)
+++.+++||.+|+++.|
T Consensus 96 ppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 96 PPEMALELLMAANYLEC 112 (112)
T ss_pred CHHHHHHHHHHhhhhcC
Confidence 99999999999998865
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.12 Score=57.89 Aligned_cols=145 Identities=15% Similarity=0.080 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhc---cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH--cc---CChHHHHHHHHH
Q 002100 802 LDLAADCYMNALN---IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS--EY---CDRDMAKSDLSM 873 (967)
Q Consensus 802 ~~~A~~~~~~Al~---~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~--~~---~~~~~A~~~l~~ 873 (967)
++.--..|++++. .+++-++..+-..-.+..-.+.|...|.++-+.......+|...+ +| ++..-|...|+-
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 4444455555555 233334444444444455555666666666554433333333333 22 566666666666
Q ss_pred hhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 002100 874 ATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAF--KPD--LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDP 946 (967)
Q Consensus 874 al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~--~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P 946 (967)
.++..++.+..-.....-+...++-..|...|++++.. .|+ -++|...-..-..-||...+++.-++-....|
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 66666666666666666667777777777777777766 333 13555555555566777777776666666666
|
|
| >PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.1e-05 Score=68.40 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=68.7
Q ss_pred EEEEEcCeEEEehhHHHh-ccCHHHHHhhcCC---CCCCccceEEeccCCCCHHHHHHHHHhHcC-CCCCCCCHHHHHHH
Q 002100 258 MSFCIGNDEIRCVRYKIA-SLSRPFRTMLYGG---FIESRREKVNFSQNGISVEAMRAAEEFSRT-KMLDSFDPRLVLEL 332 (967)
Q Consensus 258 v~~~v~~~~~~~hr~vLa-~~S~~F~~~~~~~---~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt-~~~~~~~~~~~~~l 332 (967)
|+|.|||+.|..-+..|. ....+|..|+.+. ........+-|. -+|..|+.||+|+.+ +.++..+...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID---RDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES---S-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec---cChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 5556899999875 444556677774 699999999999999 67733335678899
Q ss_pred HHHhchhChHHH-HHHH
Q 002100 333 LSFANRFCCEEL-KSAC 348 (967)
Q Consensus 333 l~~A~~~~~~~l-~~~c 348 (967)
+.-|++|+++.| ++.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999999 7776
|
They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C .... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.003 Score=62.85 Aligned_cols=141 Identities=13% Similarity=0.058 Sum_probs=90.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHhccCCC-------hhHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCchHHhhhh
Q 002100 555 PYKYRAILLVEENKLAAAITEINRIIGFKVS-------PDCLELRAWISIAL-EDYDGALRDVRALLTLDPSYMMFYGQL 626 (967)
Q Consensus 555 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~la~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~~ 626 (967)
.|..-+.+|-+ .+.++|+..+++++++..+ ...+..+|.+|..- .++++|+.+|+++-+........-...
T Consensus 76 ~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 76 TYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 34444444433 4777777777777776551 22455677777765 888888888888877644332211110
Q ss_pred hhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChH-------HHHHHHHHHHHhcCHHHHHH
Q 002100 627 HGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSL-------LRFRQSLLLLRLNSQKAAMR 699 (967)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~-------~~~~~g~~~~~~g~~~~A~~ 699 (967)
.-..-.+.....+++|.+| +..|++.....-+++. .++..|++++-..+.-.+..
T Consensus 155 KC~lKvA~yaa~leqY~~A------------------i~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ 216 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKA------------------IDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQR 216 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHH
Confidence 0112345556677777777 7777777766555543 34566788888888888888
Q ss_pred HHHHHHhcCCchhHH
Q 002100 700 SLRLARNYSTSEHEK 714 (967)
Q Consensus 700 ~l~~al~~~p~~~~a 714 (967)
.+++..+.+|.....
T Consensus 217 ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 217 ALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHhcCCccccc
Confidence 888888888886543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.14 Score=56.27 Aligned_cols=61 Identities=11% Similarity=-0.025 Sum_probs=48.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHH
Q 002100 889 AAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLE 953 (967)
Q Consensus 889 a~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~ 953 (967)
|.-++.+|+|.++.-+-.=..++.|.+.++..+|.+.....+|++|...+.+. -| +.++.+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~-n~~~~d 529 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL---PP-NERMRD 529 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC---CC-chhhHH
Confidence 44567789999999888888889999889999999999999999998887653 33 444544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.014 Score=65.22 Aligned_cols=98 Identities=15% Similarity=0.078 Sum_probs=86.9
Q ss_pred CChHHHHHHHHHhhccCCCCc-hHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHH
Q 002100 862 CDRDMAKSDLSMATQLDPMRT-YPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCE 939 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~-~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~ 939 (967)
|+...|+.++..|+-+.|... ....++|.++.+.|-..+|-..+.+++.+... +-..+.+|..|..+.+.+.|++.++
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~ 700 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFR 700 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHH
Confidence 899999999999999999653 45789999999999999999999999998854 4477889999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHH
Q 002100 940 AALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 940 ~al~~~P~~~~~l~l~~r~~ 959 (967)
+|+.++|++++.-+-+.++.
T Consensus 701 ~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 701 QALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHhcCCCChhhHHHHHHHH
Confidence 99999999998877666554
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00022 Score=68.57 Aligned_cols=88 Identities=14% Similarity=0.110 Sum_probs=71.8
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCc----------HHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC---
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENK----------LAAAITEINRIIGFKV-SPDCLELRAWISIALED--- 601 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~--- 601 (967)
+.|.+.++.....+|.+++.+++.|.++.++.+ +++|+.-|++++.++| ..++++.+|.+|..++.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 889999999999999999999999998877643 5678888999999999 78999999999987653
Q ss_pred --------HHHHHHHHHHHHHhCCCchHHh
Q 002100 602 --------YDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 602 --------~~~A~~~~~~al~l~p~~~~~~ 623 (967)
|++|..+|+++...+|++....
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 7889999999999999988766
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0002 Score=68.88 Aligned_cols=83 Identities=12% Similarity=0.047 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHc-------c-------CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC--
Q 002100 834 RKAAYDEMTKLIEKARNNASAYEKRSE-------Y-------CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK-- 897 (967)
Q Consensus 834 ~~~A~~~~~~al~~~p~~~~~~~~~~~-------~-------~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~-- 897 (967)
++.|.+.++.....+|.+++.+..-|. . .-+++|+.-|+.|+.++|+...+++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 456666666666666666665555441 1 123455555555556666666666666655554421
Q ss_pred ---------HHHHHHHHHHHHhcCCChH
Q 002100 898 ---------EAEAIAELSRAIAFKPDLQ 916 (967)
Q Consensus 898 ---------~~eAi~~~~kal~~~p~~~ 916 (967)
|++|..+|++|.+.+|+++
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 4444444444455555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=3.3e-05 Score=84.55 Aligned_cols=122 Identities=14% Similarity=0.096 Sum_probs=106.9
Q ss_pred CeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHHH---HHHHHhchhC
Q 002100 264 NDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVL---ELLSFANRFC 340 (967)
Q Consensus 264 ~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~---~ll~~A~~~~ 340 (967)
+..|.+|+.+++++|++|++|+.....+.....+++.+ .++..++++..|.|+..- ....+.+. .++..+.++.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d--~~~~~~~~~~~F~~~~s~-~~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLE--EKPEVLEALNGFQVLPSQ-VSSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccc--cchhhHhhhceEEEeccc-hHHHHHhhcCChhhhhccccc
Confidence 55699999999999999999999877766677778866 999999999999999776 34444554 8889999999
Q ss_pred hHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhh
Q 002100 341 CEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLREL 389 (967)
Q Consensus 341 ~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~ 389 (967)
.+.|+..|...+.+.+. ..++...+..+..+....+...|..++..-+
T Consensus 186 ~~~lk~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 233 (297)
T KOG1987|consen 186 NRHLKLACMPVLLSLIE-TLNVSQSLQEASNYDLKEAKSALTYVIAAGF 233 (297)
T ss_pred cHHHHHHHHHHHHHHHH-hhhhcccHHHhchhHHHHHHHHHHHHHhccc
Confidence 99999999999999998 8888999999999999999999999988733
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00013 Score=72.55 Aligned_cols=90 Identities=14% Similarity=0.164 Sum_probs=83.2
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALED 601 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~ 601 (967)
|.-++....| +.|+..|.+||.++|+.+..|.++|.++++.++|+.+.....++++++| ...+++.+|........
T Consensus 17 gnk~f~~k~y---~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 17 GNKCFIPKRY---DDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred cccccchhhh---chHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 4455555566 9999999999999999999999999999999999999999999999999 78899999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 002100 602 YDGALRDVRALLTL 615 (967)
Q Consensus 602 ~~~A~~~~~~al~l 615 (967)
|++|+..++++..+
T Consensus 94 ~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSL 107 (284)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999999776
|
|
| >KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=5.4e-05 Score=75.62 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=54.8
Q ss_pred CCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccc--eEEeccCCCCHHHHHHHHHhHcCCCCC
Q 002100 253 DEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRRE--KVNFSQNGISVEAMRAAEEFSRTKMLD 322 (967)
Q Consensus 253 ~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~--~i~~~~~~~~~~~~~~~l~~~Yt~~~~ 322 (967)
....||-++.....|+|||++||+|||+|+.+.++.-...... .|.+- +++.++|+++|+|+|||+..
T Consensus 128 k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~a--g~dm~~feafLh~l~tgEfg 197 (401)
T KOG2838|consen 128 KVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFA--GFDMDAFEAFLHSLITGEFG 197 (401)
T ss_pred eeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhh--ccChHHHHHHHHHHHhcccc
Confidence 3457888888899999999999999999999987653322222 45554 49999999999999999983
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.2 Score=57.25 Aligned_cols=391 Identities=12% Similarity=-0.098 Sum_probs=224.4
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHH-HHHHHHhcCHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELR-AWISIALEDYDGALRDVRALL 613 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~l-a~~~~~~g~~~~A~~~~~~al 613 (967)
+.+...|...+...|.....|..-|..-.+.|..+.+++.|++.+.--| +.+.|... +.+-...|+.+.-...|+.|+
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 5667778888888899988999999999999999999999999999888 66655443 333335577777677788887
Q ss_pred HhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH---
Q 002100 614 TLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR--- 690 (967)
Q Consensus 614 ~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~--- 690 (967)
.....+-....-+. ..+... ...++|..- ...|++.++.--.....++..-.-+..
T Consensus 142 ~~vG~dF~S~~lWd--kyie~e-n~qks~k~v------------------~~iyeRileiP~~~~~~~f~~f~~~l~~~~ 200 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWD--KYIEFE-NGQKSWKRV------------------ANIYERILEIPLHQLNRHFDRFKQLLNQNE 200 (577)
T ss_pred HhcccchhccHHHH--HHHHHH-hccccHHHH------------------HHHHHHHHhhhhhHhHHHHHHHHHHHhcCC
Confidence 76443322110000 001111 111112111 445555554322222222211111111
Q ss_pred ---hcCHHHHHHHHHHHHhc--CCc---hhHHHH-HHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCC
Q 002100 691 ---LNSQKAAMRSLRLARNY--STS---EHEKLV-YEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLN 761 (967)
Q Consensus 691 ---~g~~~~A~~~l~~al~~--~p~---~~~a~~-~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~ 761 (967)
+...+++++.-...... .+. ..+.+- ..-.+--..+..+++.....+.+.+..... .+
T Consensus 201 ~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~---~~---------- 267 (577)
T KOG1258|consen 201 EKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVY---QK---------- 267 (577)
T ss_pred hhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHH---Hh----------
Confidence 11222222211111100 000 000000 000011111223333333333332221000 00
Q ss_pred CCchHHHHHHHHHHhcCCCCC-----CchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH--HHHHHHHHHHHHhCCH
Q 002100 762 PESSAYVIQLLEEALRCPSDG-----LRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT--RAHQGLARVYHLKNQR 834 (967)
Q Consensus 762 ~~~~~~a~~~le~~~~~~~~~-----~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--~a~~~la~~~~~~g~~ 834 (967)
.........-.|...+.+..+ ...-..|......-...|+++...-.|++++-+-.. ..|...++-....|+.
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~ 347 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDV 347 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCch
Confidence 000001111122222222111 122245666667778899999999999999985433 4899999999999999
Q ss_pred HHHHHHHHHHHHHcc-CCHHHHHHHH---cc-CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHH---HHHH
Q 002100 835 KAAYDEMTKLIEKAR-NNASAYEKRS---EY-CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAI---AELS 906 (967)
Q Consensus 835 ~~A~~~~~~al~~~p-~~~~~~~~~~---~~-~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi---~~~~ 906 (967)
+-|...+..+.+..- ..+.....-+ ++ |+++.|...|++..+-.|....+-...+....+.|+.+.+. ..+.
T Consensus 348 ~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s 427 (577)
T KOG1258|consen 348 SLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYS 427 (577)
T ss_pred hHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHH
Confidence 999999888887663 3444433333 23 89999999999999888999998888888899999999998 4444
Q ss_pred HHHhcCCChH----HHHHHHHH-HHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 002100 907 RAIAFKPDLQ----LLHLRAAF-HDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 907 kal~~~p~~~----~~~~~a~~-~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~ 960 (967)
...+-..++. .+...++. +.-.++.+.|...+.++++..|.+.....-+.++.-
T Consensus 428 ~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 428 SIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFEL 486 (577)
T ss_pred HhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHH
Confidence 4443333321 44445554 445588999999999999999999988877777654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.36 Score=57.84 Aligned_cols=210 Identities=12% Similarity=0.038 Sum_probs=110.3
Q ss_pred HHhhcchHHHHHHHHHHhccCccc---------ccchHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 002100 411 LAMVGHASFVLYYFLSQIGMEEDM---------KSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFK 481 (967)
Q Consensus 411 ~~~~~~e~~~l~~~l~~l~~~~~~---------~~~~~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~ 481 (967)
|..+.++.-+|......+-...+. ...+--.++++...-+-...++....-.--..++..+-..+-++.++
T Consensus 929 lI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLE 1008 (1666)
T KOG0985|consen 929 LINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLE 1008 (1666)
T ss_pred HHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 444666666666555444321111 11222344555544433322333333334456677778888888888
Q ss_pred HHHHhCc----hhHHHHHHHHHHhcCChHHHHHHHHHHHh-ccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhH
Q 002100 482 AAVEAGH----IYSLVGVARTKFKRGHKYSAYKLMNSLIS-DYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPY 556 (967)
Q Consensus 482 ~al~~~~----~~a~~~la~~~~~~g~~~~A~~~l~~~i~-~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~ 556 (967)
+.+-.+. ...+..|-.+-..+.+.....++++++-. ..+..+.+......| ++|.+.|.+- .-+..+.
T Consensus 1009 KIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~Ly---EEAF~ifkkf----~~n~~A~ 1081 (1666)
T KOG0985|consen 1009 KIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLY---EEAFAIFKKF----DMNVSAI 1081 (1666)
T ss_pred HHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHH---HHHHHHHHHh----cccHHHH
Confidence 8775533 22233333333344455556666666544 334556666666677 7777777652 1111111
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhH
Q 002100 557 KYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQ 636 (967)
Q Consensus 557 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~ 636 (967)
. ......+..+.|.+.-++.- .+..|..+|...++.|...+|++.|-++ +++..+ ...-.+.
T Consensus 1082 ~---VLie~i~~ldRA~efAe~~n----~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y------~eVi~~a 1143 (1666)
T KOG0985|consen 1082 Q---VLIENIGSLDRAYEFAERCN----EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNY------LEVIDVA 1143 (1666)
T ss_pred H---HHHHHhhhHHHHHHHHHhhC----ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHH------HHHHHHH
Confidence 1 12223344455544433321 4777888888888888888888887654 344444 2223445
Q ss_pred HHhhchhhH
Q 002100 637 PLVQQWSQA 645 (967)
Q Consensus 637 ~~~~~~~~A 645 (967)
...+.|++-
T Consensus 1144 ~~~~~~edL 1152 (1666)
T KOG0985|consen 1144 SRTGKYEDL 1152 (1666)
T ss_pred HhcCcHHHH
Confidence 556666655
|
|
| >COG4907 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=7e-05 Score=80.24 Aligned_cols=11 Identities=18% Similarity=0.166 Sum_probs=5.5
Q ss_pred HHHHHhhhhcc
Q 002100 9 FFTTMRSLKII 19 (967)
Q Consensus 9 ~~~~~~~~~~~ 19 (967)
.+..||.+..+
T Consensus 528 Vvkam~~~~~~ 538 (595)
T COG4907 528 VVKAMRKALDM 538 (595)
T ss_pred HHHHHHHhCcH
Confidence 34446655544
|
|
| >PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) | Back alignment and domain information |
|---|
Probab=97.51 E-value=7.4e-05 Score=67.32 Aligned_cols=79 Identities=14% Similarity=0.184 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHHhhhhh--------hcCCchhHhhhhccchHHHHHHhhcchHHHHHHHHHHhccCcc
Q 002100 362 AVMLIEYGLEEAAYLLVAACLQVLLRELP--------CSMQNPNVMRIFCSAEARERLAMVGHASFVLYYFLSQIGMEED 433 (967)
Q Consensus 362 ~~~~~~~A~~~~~~~L~~~c~~~i~~~~~--------~~l~~~~~~~ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~~~ 433 (967)
|+.++.+|..|++++|.+.|.+||.+||. ..++.+.+..++.++++. +.+|..++.+++.|+..+.+
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~-----v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLN-----VSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS-------ECTCCCHHHHHHHHHHCTHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccc-----cccHHHHHHHHHHHHHhCHH
Confidence 68899999999999999999999999999 456667777788888887 77888999999999998877
Q ss_pred cccchHHHHHHH
Q 002100 434 MKSNTTVMLLER 445 (967)
Q Consensus 434 ~~~~~~~~ll~~ 445 (967)
.+.+....+++.
T Consensus 76 ~r~~~~~~Ll~~ 87 (103)
T PF07707_consen 76 NREEHLKELLSC 87 (103)
T ss_dssp HHTTTHHHHHCC
T ss_pred HHHHHHHHHHHh
Confidence 677777777654
|
BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0019 Score=64.55 Aligned_cols=120 Identities=20% Similarity=0.235 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHH--hcCChHHHHHHHHHHHhccCcchhHHHHHhhcCCh
Q 002100 458 LAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKF--KRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSG 535 (967)
Q Consensus 458 ~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~--~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~ 535 (967)
.++++-|+-++..|+|.+|...|..|+-. +-.+.. +=|..
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~--------l~~L~lkEkP~e~------------------------------ 220 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIIC--------LRNLQLKEKPGEP------------------------------ 220 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHH--------HHHHHhccCCCCh------------------------------
Confidence 46788999999999999999999998753 000000 00000
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
+.++++......+.+.+.++...|+|-++++..+.++...| +..+|+.+|..+...-+.++|..++.++|+
T Consensus 221 --------eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 221 --------EWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred --------HHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 11122222334455566666666666666666666666666 666666666666666666666666666666
Q ss_pred hCCCchHHh
Q 002100 615 LDPSYMMFY 623 (967)
Q Consensus 615 l~p~~~~~~ 623 (967)
++|.-..+.
T Consensus 293 ldpslasvV 301 (329)
T KOG0545|consen 293 LDPSLASVV 301 (329)
T ss_pred cChhhHHHH
Confidence 666544443
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00015 Score=79.65 Aligned_cols=90 Identities=19% Similarity=0.181 Sum_probs=87.0
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
+++.|+..|.+||+++|+.+..+-+++.++...+++..|+..+.++++.+| ...+|+.+|....+++.+.+|+..|++.
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKV 98 (476)
T ss_pred hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHh
Confidence 449999999999999999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHhCCCchHHh
Q 002100 613 LTLDPSYMMFY 623 (967)
Q Consensus 613 l~l~p~~~~~~ 623 (967)
..+.|+.+.+.
T Consensus 99 ~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 99 KKLAPNDPDAT 109 (476)
T ss_pred hhcCcCcHHHH
Confidence 99999999887
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.31 Score=58.99 Aligned_cols=112 Identities=13% Similarity=0.003 Sum_probs=72.5
Q ss_pred HHHhHHHHHhcccHHHHHHHHHHHhc-----c-C-cH---------------------HHHHHHHHHHHHhCCHHHHHHH
Q 002100 789 LNNLGSVYVDCEKLDLAADCYMNALN-----I-K-HT---------------------RAHQGLARVYHLKNQRKAAYDE 840 (967)
Q Consensus 789 ~~~lg~~~~~~g~~~~A~~~~~~Al~-----~-~-~~---------------------~a~~~la~~~~~~g~~~~A~~~ 840 (967)
|..-|......+..++|.+++.++++ . . +. ..++..+...+-.+++..|...
T Consensus 304 y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~ 383 (608)
T PF10345_consen 304 YFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQE 383 (608)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 34446667777777788888888876 1 0 00 1345566677788999999888
Q ss_pred HHHHHHHccC---------CHHHHHHHHcc----CChHHHHHHHH--------HhhccCCCC---chHHHHHHHHHHhCC
Q 002100 841 MTKLIEKARN---------NASAYEKRSEY----CDRDMAKSDLS--------MATQLDPMR---TYPYRYRAAVLMDDH 896 (967)
Q Consensus 841 ~~~al~~~p~---------~~~~~~~~~~~----~~~~~A~~~l~--------~al~l~p~~---~~~~~~la~~~~~~g 896 (967)
+..+.+.... .+..++..|.+ |+.+.|+..|. .+....+.+ ..+..++..++...+
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~ 463 (608)
T PF10345_consen 384 LEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYES 463 (608)
T ss_pred HHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhc
Confidence 8877665322 35566666654 89999999997 444444443 234556777777665
Q ss_pred CHHH
Q 002100 897 KEAE 900 (967)
Q Consensus 897 ~~~e 900 (967)
....
T Consensus 464 ~~~~ 467 (608)
T PF10345_consen 464 SRDD 467 (608)
T ss_pred ccch
Confidence 5333
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0076 Score=66.86 Aligned_cols=187 Identities=12% Similarity=-0.022 Sum_probs=119.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCC
Q 002100 684 QSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPE 763 (967)
Q Consensus 684 ~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~ 763 (967)
+-.-..+..++++-++.-++|++++|+.+.+|..++.-. ..-..+|...|+++++.....- .+.......+
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~l---g~s~~~~~~g---- 244 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASL---GKSQFLQHHG---- 244 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhh---chhhhhhccc----
Confidence 344456678888999999999999999999998887522 2346788888888886544211 0000000000
Q ss_pred chHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc----HHHHHHHHHHHHHhCCHHHHHH
Q 002100 764 SSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH----TRAHQGLARVYHLKNQRKAAYD 839 (967)
Q Consensus 764 ~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~----~~a~~~la~~~~~~g~~~~A~~ 839 (967)
...+...+ .+......+-..+|.+..+.|+.++|++.|+..++..+ ..++.+|..++..++.+.++..
T Consensus 245 ------~~~e~~~~--Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 245 ------HFWEAWHR--RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred ------chhhhhhc--cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 00000000 00111224556789999999999999999999997433 3489999999999999999999
Q ss_pred HHHHHHHH-ccCCHHHHHHHHcc-----CC---------------hHHHHHHHHHhhccCCCCchHHHH
Q 002100 840 EMTKLIEK-ARNNASAYEKRSEY-----CD---------------RDMAKSDLSMATQLDPMRTYPYRY 887 (967)
Q Consensus 840 ~~~~al~~-~p~~~~~~~~~~~~-----~~---------------~~~A~~~l~~al~l~p~~~~~~~~ 887 (967)
.+.+.-+. -|+.+...+..+.+ ++ -..|.+.+.+|++.||..+..+..
T Consensus 317 lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred HHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 88886433 25555555544422 11 134667788888888876655443
|
The molecular function of this protein is uncertain. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.014 Score=58.72 Aligned_cols=124 Identities=13% Similarity=0.042 Sum_probs=65.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCc---h---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhh
Q 002100 684 QSLLLLRLNSQKAAMRSLRLARNYSTS---E---HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALAD 757 (967)
Q Consensus 684 ~g~~~~~~g~~~~A~~~l~~al~~~p~---~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~ 757 (967)
++--.+...+++.|+..|++++..-.+ . .+.+...++++.+..++++|-..+.+-....-...
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~----------- 184 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD----------- 184 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh-----------
Confidence 333344555666777777666543222 1 22344456667777777777666655442221111
Q ss_pred cCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC------cHHHHHHHHHHHHHh
Q 002100 758 SSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK------HTRAHQGLARVYHLK 831 (967)
Q Consensus 758 ~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~------~~~a~~~la~~~~~~ 831 (967)
.-+....++...-.+|+...+|..|..+|+..-.+. ...+..+|-.. +..
T Consensus 185 -----------------------~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~ 240 (308)
T KOG1585|consen 185 -----------------------AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDE 240 (308)
T ss_pred -----------------------hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hcc
Confidence 011122344444456666778888888888866532 12245554443 345
Q ss_pred CCHHHHHHHHH
Q 002100 832 NQRKAAYDEMT 842 (967)
Q Consensus 832 g~~~~A~~~~~ 842 (967)
|+.++..+.+.
T Consensus 241 gD~E~~~kvl~ 251 (308)
T KOG1585|consen 241 GDIEEIKKVLS 251 (308)
T ss_pred CCHHHHHHHHc
Confidence 66666655554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0044 Score=64.74 Aligned_cols=150 Identities=13% Similarity=0.005 Sum_probs=121.8
Q ss_pred HHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHH-ccCCHHHHHHHHc-------cC
Q 002100 793 GSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKNQRKAAYDEMTKLIEK-ARNNASAYEKRSE-------YC 862 (967)
Q Consensus 793 g~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~-------~~ 862 (967)
+.+....|+..+|...+++.++.-|++ ++..--++++..|+...-...+++++-. +++.+-.-+..|. .|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 345567899999999999999977766 6666778899999999999999999987 6766544444443 38
Q ss_pred ChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHHcCChHHHHHH
Q 002100 863 DRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-----QLLHLRAAFHDSMGDHLHTQRD 937 (967)
Q Consensus 863 ~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-----~~~~~~a~~~~~~g~~~~A~~~ 937 (967)
-+++|...-+++++++|.+..+....+.++...+++.++.+...+--..-.+. .-|..-|.++..-+.|+.|+..
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999999999999999999999999999999999999887654332222 2455678899999999999999
Q ss_pred HHHHH
Q 002100 938 CEAAL 942 (967)
Q Consensus 938 ~~~al 942 (967)
|.+-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 98654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.62 Score=55.98 Aligned_cols=229 Identities=13% Similarity=0.052 Sum_probs=144.5
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc--chHHHHHHHH
Q 002100 676 GKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQR--SFEAFFLKAY 753 (967)
Q Consensus 676 ~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~~~ 753 (967)
+.+..|..+|...++.+...+|+..|-++ +++..|...-.+..+.|.|++-+.++.-+-+.-. .-..... +
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi--~ 1174 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELI--F 1174 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHH--H
Confidence 45778999999999999999999988664 4566788888888999999999999887765433 2121112 2
Q ss_pred HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCC
Q 002100 754 ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQ 833 (967)
Q Consensus 754 ~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~ 833 (967)
++|.+. -+.-+|+.+.- |..+ -....|+-.+..+.|+.|.-+|... .-+..||..+..+|+
T Consensus 1175 AyAkt~--------rl~elE~fi~g----pN~A-~i~~vGdrcf~~~~y~aAkl~y~~v------SN~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1175 AYAKTN--------RLTELEEFIAG----PNVA-NIQQVGDRCFEEKMYEAAKLLYSNV------SNFAKLASTLVYLGE 1235 (1666)
T ss_pred HHHHhc--------hHHHHHHHhcC----CCch-hHHHHhHHHhhhhhhHHHHHHHHHh------hhHHHHHHHHHHHHH
Confidence 222221 11222333322 2222 3345688888999999998888543 356678888999999
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccC-CCCchHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002100 834 RKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLD-PMRTYPYRYRAAVLMDDHKEAEAIAELSRA 908 (967)
Q Consensus 834 ~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~-p~~~~~~~~la~~~~~~g~~~eAi~~~~ka 908 (967)
|..|.+.-+++- +...|-.-... +++.-|.-+ .++ --+++-+-.+-..|...|-++|-|..++.+
T Consensus 1236 yQ~AVD~aRKAn-----s~ktWK~VcfaCvd~~EFrlAQiC-----GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1236 YQGAVDAARKAN-----STKTWKEVCFACVDKEEFRLAQIC-----GLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHHhhhcc-----chhHHHHHHHHHhchhhhhHHHhc-----CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 999988877663 23334333311 222222111 111 012344556777888899999999999988
Q ss_pred HhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 909 IAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAA 941 (967)
Q Consensus 909 l~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~a 941 (967)
+.+.-.. ..+..+|.+|-+ =++++-.+.++-.
T Consensus 1306 LGLERAHMgmfTELaiLYsk-ykp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1306 LGLERAHMGMFTELAILYSK-YKPEKMMEHLKLF 1338 (1666)
T ss_pred hchhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 8765442 355556666544 4566666655543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.41 Score=53.84 Aligned_cols=381 Identities=12% Similarity=0.018 Sum_probs=206.1
Q ss_pred HHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchH
Q 002100 543 NTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMM 621 (967)
Q Consensus 543 ~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 621 (967)
++-|+.+|.+..+|+.+-.-+..+ .+++..+.|++.+...| .+.+|.....-.+..++|+.....|.+.|..-=+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 677899999999999998877777 99999999999999999 8999999999999999999999999988864222 22
Q ss_pred HhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHH---------Hhc
Q 002100 622 FYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLL---------RLN 692 (967)
Q Consensus 622 ~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~---------~~g 692 (967)
.|. ..+..+....++-..+...|. .|......-+..++....+|......+. .+.
T Consensus 88 LW~-----lYl~YVR~~~~~~~~~r~~m~-----------qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~Q 151 (656)
T KOG1914|consen 88 LWK-----LYLSYVRETKGKLFGYREKMV-----------QAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQ 151 (656)
T ss_pred HHH-----HHHHHHHHHccCcchHHHHHH-----------HHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHH
Confidence 221 112222222222222210110 0011111222244555455543333322 222
Q ss_pred CHHHHHHHHHHHHhcCCchhHH-HH-------------HHHHHHHHcCChHHHHHHHHHHHhccc----chHH-------
Q 002100 693 SQKAAMRSLRLARNYSTSEHEK-LV-------------YEGWILYDTGHREEALAKAEESISIQR----SFEA------- 747 (967)
Q Consensus 693 ~~~~A~~~l~~al~~~p~~~~a-~~-------------~lg~~~~~~g~~~eA~~~~~~al~~~p----~~~~------- 747 (967)
+.+.-.+.|++++..--.+.+- |. ..-.+......|..|.+.+++...+-. ..++
T Consensus 152 RI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~ 231 (656)
T KOG1914|consen 152 RITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTK 231 (656)
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCh
Confidence 4445555777777643333221 10 011122233445556665554432211 0000
Q ss_pred -------HHHHHHHhhhcCCCC----C-chHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhccc--------------
Q 002100 748 -------FFLKAYALADSSLNP----E-SSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEK-------------- 801 (967)
Q Consensus 748 -------~~~~~~~la~~~~~~----~-~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~-------------- 801 (967)
.+...+..-...... . -..+..=..++.+....- ..+.|+..+......++
T Consensus 232 ~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~---~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~ 308 (656)
T KOG1914|consen 232 DEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGY---HPEIWYDYSMYLIEISDLLTEKGDVPDAKSL 308 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhhHHHHHhcccccchhh
Confidence 000001110100000 0 011111112222221111 12333333333333333
Q ss_pred HHHHHHHHHHHhcc-CcHH--HHHHHHHHHHHhC---CHHHHHHHHHHHHHHccCCHH-HHHHHHcc----CChHHHHHH
Q 002100 802 LDLAADCYMNALNI-KHTR--AHQGLARVYHLKN---QRKAAYDEMTKLIEKARNNAS-AYEKRSEY----CDRDMAKSD 870 (967)
Q Consensus 802 ~~~A~~~~~~Al~~-~~~~--a~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~-~~~~~~~~----~~~~~A~~~ 870 (967)
.+++..+|+++++. .... .++.++..-...- +++.-...+++++.....+.. +|...-.+ .-...|...
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 67888888888872 2222 4444554333322 366666777777765433222 22222221 445677778
Q ss_pred HHHhhccCCCCchHHHHHHH-HHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 871 LSMATQLDPMRTYPYRYRAA-VLMDDHKEAEAIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 871 l~~al~l~p~~~~~~~~la~-~~~~~g~~~eAi~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
|.+|-+..-....++..-|. -|.-.++.+-|...|+--+...++.. ........+..+++-..|...|++++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 88876654433344444443 34456999999999999999988854 4445677888899999999999999987
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.094 Score=60.89 Aligned_cols=147 Identities=14% Similarity=0.011 Sum_probs=106.1
Q ss_pred cccHHHHHHHHHHHhccCcHH-H--------HHHHHHHH--H--HhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----
Q 002100 799 CEKLDLAADCYMNALNIKHTR-A--------HQGLARVY--H--LKNQRKAAYDEMTKLIEKARNNASAYEKRSEY---- 861 (967)
Q Consensus 799 ~g~~~~A~~~~~~Al~~~~~~-a--------~~~la~~~--~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~---- 861 (967)
.||-+.++..+.++.+..... . ++...... . ...+.+.|.+.++...+..|+....+...|.+
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK 280 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 477778888888777733221 1 11111111 1 24567778888888888888888877777753
Q ss_pred CChHHHHHHHHHhhccCCC----CchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH--HHHHHHHHHHHcCCh----
Q 002100 862 CDRDMAKSDLSMATQLDPM----RTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ--LLHLRAAFHDSMGDH---- 931 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~----~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~--~~~~~a~~~~~~g~~---- 931 (967)
|+.++|+..|++++..... ....++.+|++++-+++|++|..+|.+..+.+.-.. ..|..|.++...|+.
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~ 360 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAK 360 (468)
T ss_pred cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhh
Confidence 8888888888888754332 234577899999999999999999999998776654 555679999999999
Q ss_pred ---HHHHHHHHHHHhcC
Q 002100 932 ---LHTQRDCEAALCLD 945 (967)
Q Consensus 932 ---~~A~~~~~~al~~~ 945 (967)
++|...++++-.+.
T Consensus 361 ~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 361 EHKKEAEELFRKVPKLK 377 (468)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 88888888775443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.23 Score=65.05 Aligned_cols=108 Identities=13% Similarity=0.042 Sum_probs=85.9
Q ss_pred CCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC----------
Q 002100 782 GLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNN---------- 851 (967)
Q Consensus 782 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------- 851 (967)
....+..|.+.|.+....|+++.|-.+.-+|.+...+.++...|..++.+|+...|+..+++.++++-.+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 3456789999999999999999999999999998888999999999999999999999999999765322
Q ss_pred -------HHHHHHHHcc----CC--hHHHHHHHHHhhccCCCCchHHHHHH
Q 002100 852 -------ASAYEKRSEY----CD--RDMAKSDLSMATQLDPMRTYPYRYRA 889 (967)
Q Consensus 852 -------~~~~~~~~~~----~~--~~~A~~~l~~al~l~p~~~~~~~~la 889 (967)
..+....+.| ++ -..-+..|..+.+..|.....++.+|
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 1122222222 33 34567788888899888777777777
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00018 Score=49.72 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=29.2
Q ss_pred HHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHH
Q 002100 542 LNTATELDPTLSYPYKYRAILLVEENKLAAAIT 574 (967)
Q Consensus 542 ~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~ 574 (967)
|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999998863
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00041 Score=51.35 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 002100 916 QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDK 957 (967)
Q Consensus 916 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r 957 (967)
+++..+|.+|..+|++++|++.|+++++.+|+|++++..+.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467778888888888888888888888888888888776654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.086 Score=62.70 Aligned_cols=281 Identities=15% Similarity=0.059 Sum_probs=153.3
Q ss_pred ChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhh---
Q 002100 472 EYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATEL--- 548 (967)
Q Consensus 472 ~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l--- 548 (967)
+-.+|..+|+.+.+.++..+...++.+++.-+. +.-.|.+.|+.+|..+.+-
T Consensus 227 ~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~-------------------------g~~~d~e~a~~~l~~aa~~~~~ 281 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHSEAQYALGICYLAGTY-------------------------GVTQDLESAIEYLKLAAESFKK 281 (552)
T ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHhhccc-------------------------cccccHHHHHHHHHHHHHHHHH
Confidence 567899999999999998888888776643211 1111445666666655541
Q ss_pred --CCCCchhHHHHHHHHHhcC-----cHHHHHHHHHHHhccCCChhHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCC
Q 002100 549 --DPTLSYPYKYRAILLVEEN-----KLAAAITEINRIIGFKVSPDCLELRAWISIALE---DYDGALRDVRALLTLDPS 618 (967)
Q Consensus 549 --~P~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g---~~~~A~~~~~~al~l~p~ 618 (967)
.-.++.+.+.+|.+|.... +++.|+..|.++-... ++++.+.+|.+|..-. ++..|..+|..+....
T Consensus 282 ~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-- 358 (552)
T KOG1550|consen 282 AATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-- 358 (552)
T ss_pred HHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--
Confidence 0114456666676666632 5566666666664432 4556666666666544 4455555555554332
Q ss_pred chHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH----hcCH
Q 002100 619 YMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR----LNSQ 694 (967)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~----~g~~ 694 (967)
...+.++++.+|.. ..+.
T Consensus 359 ----------------------------------------------------------~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 359 ----------------------------------------------------------HILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ----------------------------------------------------------ChHHHHHHHHHHHhCCCcCCCH
Confidence 22233333333332 3466
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHc-CChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHH
Q 002100 695 KAAMRSLRLARNYSTSEHEKLVYEGWILYDT-GHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLE 773 (967)
Q Consensus 695 ~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~-g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le 773 (967)
..|...++++.+.. .+.+...++..+..- ++++.+...+....+..-.....
T Consensus 381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~------------------------- 433 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQS------------------------- 433 (552)
T ss_pred HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhh-------------------------
Confidence 77888888887777 344555555554433 66666666555444332211100
Q ss_pred HHhcCCCCCCchHHHHHHhHHHHHh----cccHHHHHHHHHHHhccCcHHHHHHHHHHHHHh----CCHHHHHHHHHHHH
Q 002100 774 EALRCPSDGLRKGQALNNLGSVYVD----CEKLDLAADCYMNALNIKHTRAHQGLARVYHLK----NQRKAAYDEMTKLI 845 (967)
Q Consensus 774 ~~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~----g~~~~A~~~~~~al 845 (967)
....+......... ..+...+...+.++...++..+...++.+|+.- .+++.|...|+++-
T Consensus 434 -----------~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~ 502 (552)
T KOG1550|consen 434 -----------NAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARAS 502 (552)
T ss_pred -----------HHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHH
Confidence 00000000001111 235566667777777777777777777776654 34667777776666
Q ss_pred HHccCCHHHHHHHHcc-------CChHHHHHHHHHhhccCC
Q 002100 846 EKARNNASAYEKRSEY-------CDRDMAKSDLSMATQLDP 879 (967)
Q Consensus 846 ~~~p~~~~~~~~~~~~-------~~~~~A~~~l~~al~l~p 879 (967)
... +.+.+.+|.+ .....|...|.++.+.+.
T Consensus 503 ~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 503 EQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDS 540 (552)
T ss_pred Hhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCc
Confidence 655 4555555522 115556666666555444
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0029 Score=63.31 Aligned_cols=75 Identities=20% Similarity=0.215 Sum_probs=67.0
Q ss_pred CCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHH
Q 002100 878 DPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTL 952 (967)
Q Consensus 878 ~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l 952 (967)
+......+.+.+.++...|+|-++++..+.++...|.+. +|+.+|.++...=+..+|.++|.++|+++|.-..+.
T Consensus 226 dk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 226 DKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 334456788999999999999999999999999999975 999999999999999999999999999999866543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0097 Score=58.05 Aligned_cols=149 Identities=22% Similarity=0.246 Sum_probs=82.0
Q ss_pred HHHHHHHHHcCChH---HHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHh
Q 002100 716 VYEGWILYDTGHRE---EALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNL 792 (967)
Q Consensus 716 ~~lg~~~~~~g~~~---eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~l 792 (967)
...||-|+...+.+ +|-..|+++++.-.... + .....++.+.........-..+-..+
T Consensus 35 ~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~---------------~----~~~~~~ekf~~~n~~t~Ya~laaL~l 95 (207)
T COG2976 35 GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKK---------------P----KSIAAAEKFVQANGKTIYAVLAALEL 95 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------------c----hhHHHHHHHHhhccccHHHHHHHHHH
Confidence 34566666655444 66777776663221000 0 22233333333333333333455566
Q ss_pred HHHHHhcccHHHHHHHHHHHhcc-CcHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHH
Q 002100 793 GSVYVDCEKLDLAADCYMNALNI-KHTR----AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMA 867 (967)
Q Consensus 793 g~~~~~~g~~~~A~~~~~~Al~~-~~~~----a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A 867 (967)
+..+.+.+++++|+..++.++.. .... +-.+||++...+|++++|+..++...+..-
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w------------------ 157 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW------------------ 157 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH------------------
Confidence 77777888888888888877752 2211 566677777777777777766654332110
Q ss_pred HHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 868 KSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 868 ~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
.+.....+|.++...|+.++|...|+++++..++
T Consensus 158 -------------~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 158 -------------AAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred -------------HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 0111233566666666666666666666666544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.025 Score=62.88 Aligned_cols=201 Identities=11% Similarity=-0.004 Sum_probs=119.3
Q ss_pred HHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCc-chhHHHHHhhcCChHHHHHHHH
Q 002100 465 VVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTP-VGWMYQERSLYCSGKEKMMDLN 543 (967)
Q Consensus 465 ~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~-~g~~~~~~~~y~~~~~A~~~~~ 543 (967)
....+..+.+.-++.-.+||+++|.-+.+++-...-......+|.++++++++.-.. .+...+... ...+-
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~--------~g~~~ 247 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQH--------HGHFW 247 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhc--------ccchh
Confidence 345677889999999999999988554444323223334456788888887763221 111111110 00011
Q ss_pred HhHhhCCCC--chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC---ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CC
Q 002100 544 TATELDPTL--SYPYKYRAILLVEENKLAAAITEINRIIGFKV---SPDCLELRAWISIALEDYDGALRDVRALLTL-DP 617 (967)
Q Consensus 544 ~al~l~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~l-~p 617 (967)
.....-+.+ ..+...+|.+..+.|+.++|++.+...++..| +..+++++..+++.++.|.++...+.+-=+. -|
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 111111222 45567789999999999999999999999888 3568999999999999999998888775332 23
Q ss_pred CchHHhhhhhhhhhHhhhHHHh-hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHH
Q 002100 618 SYMMFYGQLHGDNLVETLQPLV-QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRF 682 (967)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~ 682 (967)
+..... |..+++..+. ++--.++ ....+--+...+.|++.++++++.||..+....
T Consensus 328 kSAti~------YTaALLkaRav~d~fs~e---~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 328 KSATIC------YTAALLKARAVGDKFSPE---AASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred chHHHH------HHHHHHHHHhhccccCch---hhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 333332 3444443331 1100000 000011111224467888899999988776655
|
The molecular function of this protein is uncertain. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0092 Score=65.40 Aligned_cols=145 Identities=15% Similarity=0.131 Sum_probs=114.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH-hcccchHHHHHHHHHhhhcCCC
Q 002100 683 RQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI-SIQRSFEAFFLKAYALADSSLN 761 (967)
Q Consensus 683 ~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al-~~~p~~~~~~~~~~~la~~~~~ 761 (967)
..-..|+...+...+.+-.+.++....+.+.++...+..++..|++.+|.+.+...= ...|.+.
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~--------------- 275 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGT--------------- 275 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCcc---------------
Confidence 344556778888889998899988888889999999999999999999998876531 1112110
Q ss_pred CCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc-----------cCc---------HHHH
Q 002100 762 PESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN-----------IKH---------TRAH 821 (967)
Q Consensus 762 ~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-----------~~~---------~~a~ 821 (967)
..........|+|+|.++++.+.|.-+..+|.+|+. +.+ -.++
T Consensus 276 -----------------~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eil 338 (696)
T KOG2471|consen 276 -----------------ITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEIL 338 (696)
T ss_pred -----------------ccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhH
Confidence 000011234679999999999999999999999994 111 1278
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS 859 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 859 (967)
++.|..|...|+.-.|.+.|.+++.....++..|..++
T Consensus 339 YNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlA 376 (696)
T KOG2471|consen 339 YNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLA 376 (696)
T ss_pred HhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 99999999999999999999999999999999999887
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.002 Score=69.53 Aligned_cols=140 Identities=16% Similarity=0.080 Sum_probs=87.0
Q ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhccCc--HHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHccCCHHHHHHHHccCCh
Q 002100 788 ALNNLGSVYVDCEKLDLAADCYMNALNIKH--TRAHQGLARVYHL-KNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDR 864 (967)
Q Consensus 788 a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~a~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 864 (967)
+|..+.......+..+.|...|.+|.+... ..+|...|.+.+. .++.+.|...|+.+++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~----------------- 65 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK----------------- 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----------------
Confidence 444455555555556666666666665322 2355555555444 33334355555555554
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHcCChHHHHHHHHH
Q 002100 865 DMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ----LLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 865 ~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~----~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
.|.+...|......+...++.+.|...|++++..-|... +|.....+-...|+.+...+..++
T Consensus 66 -------------f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 66 -------------FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp -------------HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred -------------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455556666666677777888888888888887766633 677777777788888888888888
Q ss_pred HHhcCCCchhHHHHHHH
Q 002100 941 ALCLDPNHTDTLELYDK 957 (967)
Q Consensus 941 al~~~P~~~~~l~l~~r 957 (967)
+.+..|++..+..+.+|
T Consensus 133 ~~~~~~~~~~~~~f~~r 149 (280)
T PF05843_consen 133 AEELFPEDNSLELFSDR 149 (280)
T ss_dssp HHHHTTTS-HHHHHHCC
T ss_pred HHHHhhhhhHHHHHHHH
Confidence 88888887766655544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00017 Score=49.77 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=27.3
Q ss_pred HHHhhccCCCCchHHHHHHHHHHhCCCHHHHH
Q 002100 871 LSMATQLDPMRTYPYRYRAAVLMDDHKEAEAI 902 (967)
Q Consensus 871 l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi 902 (967)
|++|++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888888888888888888888888888886
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.11 Score=52.45 Aligned_cols=220 Identities=15% Similarity=0.081 Sum_probs=113.0
Q ss_pred HhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHh-CchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHH
Q 002100 449 SATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEA-GHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQ 527 (967)
Q Consensus 449 ~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~ 527 (967)
+.++..-.+..|..-+..|...++|++|..++.+|.+- ....++..-|..| +++ +.+..
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKay-------------Eqa-------amLak 82 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAY-------------EQA-------AMLAK 82 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHH-------------HHH-------HHHHH
Confidence 34444555667777788888889999999999999864 2233333322211 111 33334
Q ss_pred HHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHH
Q 002100 528 ERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALR 607 (967)
Q Consensus 528 ~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~ 607 (967)
+...+ .++...|++|..+ |.+.|..+.|-..++++-+ ....-+.++|+.
T Consensus 83 e~~kl---sEvvdl~eKAs~l--------------Y~E~GspdtAAmaleKAak--------------~lenv~Pd~Alq 131 (308)
T KOG1585|consen 83 ELSKL---SEVVDLYEKASEL--------------YVECGSPDTAAMALEKAAK--------------ALENVKPDDALQ 131 (308)
T ss_pred HHHHh---HHHHHHHHHHHHH--------------HHHhCCcchHHHHHHHHHH--------------HhhcCCHHHHHH
Confidence 44444 5566666655543 3333444333333333321 123334455555
Q ss_pred HHHHHHHhCC---CchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHH--hcCCCChHHHH
Q 002100 608 DVRALLTLDP---SYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHML--ANDPGKSLLRF 682 (967)
Q Consensus 608 ~~~~al~l~p---~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l--~~~p~~~~~~~ 682 (967)
.|++++.+-. ...+++... -..+.++..+++|++|- ...+..+.-.+ ...|.....+.
T Consensus 132 lYqralavve~~dr~~ma~el~---gk~sr~lVrl~kf~Eaa--------------~a~lKe~~~~~~~~~y~~~~k~~v 194 (308)
T KOG1585|consen 132 LYQRALAVVEEDDRDQMAFELY---GKCSRVLVRLEKFTEAA--------------TAFLKEGVAADKCDAYNSQCKAYV 194 (308)
T ss_pred HHHHHHHHHhccchHHHHHHHH---HHhhhHhhhhHHhhHHH--------------HHHHHhhhHHHHHhhcccHHHHHH
Confidence 5555444311 111121111 22344555555555551 00011111112 22233334455
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc----CCchhHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 683 RQSLLLLRLNSQKAAMRSLRLARNY----STSEHEKLVYEGWILYDTGHREEALAKAEE 737 (967)
Q Consensus 683 ~~g~~~~~~g~~~~A~~~l~~al~~----~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~ 737 (967)
..-.+|+-.++|..|.++++...+. .|++..++-+|-.. +..|+.++....+..
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEGDIEEIKKVLSS 252 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hccCCHHHHHHHHcC
Confidence 5566777788999999999886654 34555555555433 467888877766654
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00036 Score=73.25 Aligned_cols=84 Identities=26% Similarity=0.276 Sum_probs=70.5
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHH
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
|+++.|++.|..+++++|.....+-.++.++.+.++...|+..+..+++++|+.. .|-.++.++..+|+|++|..+++.
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 5678888888888888888888888888888888888888888888888888854 677788888888888888888888
Q ss_pred HHhcC
Q 002100 941 ALCLD 945 (967)
Q Consensus 941 al~~~ 945 (967)
+.+++
T Consensus 208 a~kld 212 (377)
T KOG1308|consen 208 ACKLD 212 (377)
T ss_pred HHhcc
Confidence 87765
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.001 Score=66.34 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
+..|.++|..+|..+.++.+++.++++.++++.+.....+++++.|+...+.+.+|..+.....+++|+..++++..+..
T Consensus 30 i~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 30 IDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLR 109 (284)
T ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999976543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.018 Score=60.40 Aligned_cols=167 Identities=9% Similarity=-0.041 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHH
Q 002100 588 CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVV 667 (967)
Q Consensus 588 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~ 667 (967)
-....+.+....|++.+|...+.++|+-.|.+..++.. ...++...|+...- ...+
T Consensus 105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kf------sh~a~fy~G~~~~~------------------k~ai 160 (491)
T KOG2610|consen 105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKF------SHDAHFYNGNQIGK------------------KNAI 160 (491)
T ss_pred hhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhh------hhhHHHhccchhhh------------------hhHH
Confidence 34445666778899999999999999999998888733 23444444444333 6677
Q ss_pred HHHHhc-CCCChHHHH---HHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 668 HHMLAN-DPGKSLLRF---RQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 668 ~~~l~~-~p~~~~~~~---~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
++++.. +|+.|..-+ ..+..+...|-|++|.+.-+++++++|.+.-+....+.++...|++.++.+...+.-..-.
T Consensus 161 ~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr 240 (491)
T KOG2610|consen 161 EKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR 240 (491)
T ss_pred HHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh
Confidence 777766 666654444 4455677889999999999999999999999999999999999999999998887543322
Q ss_pred chHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 744 SFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 744 ~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
... . ....-|...+..+.+.+.|+.|++.|.+-+-
T Consensus 241 ~s~-------m-----------------------------lasHNyWH~Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 241 QSW-------M-----------------------------LASHNYWHTALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred hhh-------H-----------------------------HHhhhhHHHHHhhhcccchhHHHHHHHHHHH
Confidence 111 0 0012344457778888899999998876543
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0012 Score=50.46 Aligned_cols=49 Identities=20% Similarity=0.377 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhhh
Q 002100 916 QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNE 964 (967)
Q Consensus 916 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~~ 964 (967)
+.++.+|..+.++|+|++|++.++.+|++.|+|.++..+...+++++.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 3578899999999999999999999999999999999999999998764
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.065 Score=60.10 Aligned_cols=267 Identities=14% Similarity=0.101 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS--------EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFL 750 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~--------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 750 (967)
...+..+...+..++++++...++++...--. .....+..-.-+....+.+++.......... +.......
T Consensus 30 ~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~-~~~~~~l~ 108 (352)
T PF02259_consen 30 EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLSQN-PQDLKSLL 108 (352)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhccc-HHHHHHHH
Confidence 56666777778999999999988887654211 1111111111222233344444443221110 11111111
Q ss_pred HHH--HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC------cHHHHH
Q 002100 751 KAY--ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK------HTRAHQ 822 (967)
Q Consensus 751 ~~~--~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~------~~~a~~ 822 (967)
..+ .+-....+.......+..=..++............+...+.+....|+++.|...+.++...+ .+.+.+
T Consensus 109 ~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~ 188 (352)
T PF02259_consen 109 KRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFL 188 (352)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHH
Confidence 111 111111122222333333233333333345566788999999999999999999999999855 566888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHccC-CH----HHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhC--
Q 002100 823 GLARVYHLKNQRKAAYDEMTKLIEKARN-NA----SAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDD-- 895 (967)
Q Consensus 823 ~la~~~~~~g~~~~A~~~~~~al~~~p~-~~----~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~-- 895 (967)
..+.+....|+..+|+..++..++.... .. ......+.....+.... ...-.........++..+|......
T Consensus 189 e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~l~~a~w~~~~~~ 267 (352)
T PF02259_consen 189 EYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISS-TNLDKESKELKAKAFLLLAKWLDELYS 267 (352)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccc-cchhhhhHHHHHHHHHHHHHHHHhhcc
Confidence 8999999999999999999998883222 10 00111000000000000 0000000011234555666666665
Q ss_pred ----CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHhcCCC
Q 002100 896 ----HKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGD-----------------HLHTQRDCEAALCLDPN 947 (967)
Q Consensus 896 ----g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~-----------------~~~A~~~~~~al~~~P~ 947 (967)
++.++++..|.++++..|+. .+++..|..+...=+ ...|+..|-+++...|.
T Consensus 268 ~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 268 KLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 88999999999999999984 477777776654422 13488888899988887
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.71 Score=53.39 Aligned_cols=51 Identities=22% Similarity=0.096 Sum_probs=36.6
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
+.++-|...-+-+. ....+..+..+|..+...|++++|-+.|-.+|+++.-
T Consensus 977 ~afd~afdlari~~--k~k~~~vhlk~a~~ledegk~edaskhyveaiklnty 1027 (1636)
T KOG3616|consen 977 CAFDFAFDLARIAA--KDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTY 1027 (1636)
T ss_pred cchhhHHHHHHHhh--hccCccchhHHhhhhhhccchhhhhHhhHHHhhcccc
Confidence 34444444433332 2345678888999999999999999999999998754
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.02 Score=55.99 Aligned_cols=140 Identities=19% Similarity=0.138 Sum_probs=82.6
Q ss_pred chHHHHHHHHHHhccCcccccchHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHH
Q 002100 416 HASFVLYYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGV 495 (967)
Q Consensus 416 ~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~l 495 (967)
.++..|..+...+..+ .......++.+....+..-.-.++...++..+.+.+++++|+..++.++.......+-.+
T Consensus 52 ~AS~~Y~~~i~~~~ak----~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l 127 (207)
T COG2976 52 EASAQYQNAIKAVQAK----KPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHHHhcC----CchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHH
Confidence 3344454444444322 113334444444444344455566667777777777777777777777654222211111
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHH
Q 002100 496 ARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITE 575 (967)
Q Consensus 496 a~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~ 575 (967)
+-.++|.+...+|++++|+..
T Consensus 128 -----------------------------------------------------------~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 128 -----------------------------------------------------------AALRLARVQLQQKKADAALKT 148 (207)
T ss_pred -----------------------------------------------------------HHHHHHHHHHHhhhHHHHHHH
Confidence 123567777777777777777
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 576 INRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 576 ~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
++...+.+=.+.....+|.++...|+-++|...|.++++.+++
T Consensus 149 L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 149 LDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 7665433224555667788888888888888888888877644
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.017 Score=60.18 Aligned_cols=160 Identities=14% Similarity=0.038 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhH
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLV 632 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 632 (967)
..-+..+.-....|++.+|...|..++...| +.++...++.+|...|+.+.|...+.. .|.....-.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~~-------- 202 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQDKA-------- 202 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----CcccchhhH--------
Confidence 3445667778899999999999999999999 899999999999999999998876654 333222210
Q ss_pred hhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--
Q 002100 633 ETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS-- 710 (967)
Q Consensus 633 ~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~-- 710 (967)
+.....++++..+....++ +..+.+.+..+|++..+.+.++..+...|++++|...+-..++.+-.
T Consensus 203 ---------~~~l~a~i~ll~qaa~~~~---~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~ 270 (304)
T COG3118 203 ---------AHGLQAQIELLEQAAATPE---IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE 270 (304)
T ss_pred ---------HHHHHHHHHHHHHHhcCCC---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 0011123344444455555 77888889999999999999999999999999999998888876543
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 711 EHEKLVYEGWILYDTGHREEALAKAEE 737 (967)
Q Consensus 711 ~~~a~~~lg~~~~~~g~~~eA~~~~~~ 737 (967)
+..+...+-.++...|.-+.+...|.+
T Consensus 271 d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 271 DGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred CcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 445566666666666655555555444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.034 Score=61.15 Aligned_cols=166 Identities=16% Similarity=0.070 Sum_probs=120.8
Q ss_pred HHHHHHhHHHHHhcccHHHHHHHHHHHhcc------CcHHHHHHHHHHHHH---hCCHHHHHHHHHHH-HHHccCCHHHH
Q 002100 786 GQALNNLGSVYVDCEKLDLAADCYMNALNI------KHTRAHQGLARVYHL---KNQRKAAYDEMTKL-IEKARNNASAY 855 (967)
Q Consensus 786 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~------~~~~a~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~~ 855 (967)
+....++-..|....+|+.=++..+..-.+ +...+.+.+|-++.+ .|+.++|+..+..+ ....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 355667777788999999888888776653 233466667777777 89999999999884 44555677877
Q ss_pred HHHHc-c------------CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHH--------h----
Q 002100 856 EKRSE-Y------------CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAI--------A---- 910 (967)
Q Consensus 856 ~~~~~-~------------~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal--------~---- 910 (967)
...|. | ...++|+..|.++.+++| +.+.=.|++.++.-.|...+....+.+.. +
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 77772 1 347899999999999995 56667788888887776555544333332 1
Q ss_pred -cCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHH
Q 002100 911 -FKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTL 952 (967)
Q Consensus 911 -~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l 952 (967)
...+.+.+-.++.+....||+++|.+.+++++.+.|...+.-
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~ 342 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE 342 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence 122244666688889999999999999999999998765543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00085 Score=49.61 Aligned_cols=43 Identities=19% Similarity=0.054 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGW 720 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~ 720 (967)
+..++.+|..|.++|++++|++.|+++++.+|++++++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3567888999999999999999999999999999999888875
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.024 Score=61.19 Aligned_cols=140 Identities=10% Similarity=0.004 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH-cCChHHHHHHHHHHHhcccchHHHHHHHHHhhhc
Q 002100 680 LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYD-TGHREEALAKAEESISIQRSFEAFFLKAYALADS 758 (967)
Q Consensus 680 ~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~ 758 (967)
+|........+.+..+.|...|++|++..+.....|...|.+.+. .++.+.|.+.|+.+++..|...
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~------------ 70 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP------------ 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH------------
Confidence 455566777778889999999999997777788999999999777 5666669999999998888665
Q ss_pred CCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc-CcH----HHHHHHHHHHHHhCC
Q 002100 759 SLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI-KHT----RAHQGLARVYHLKNQ 833 (967)
Q Consensus 759 ~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~-~~~----~a~~~la~~~~~~g~ 833 (967)
..|......+...++.+.|...|++++.. ... ..|......-...|+
T Consensus 71 ----------------------------~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd 122 (280)
T PF05843_consen 71 ----------------------------DFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD 122 (280)
T ss_dssp ----------------------------HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-
T ss_pred ----------------------------HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC
Confidence 55666667778889999999999999992 222 378888888899999
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHH
Q 002100 834 RKAAYDEMTKLIEKARNNASAYEKRS 859 (967)
Q Consensus 834 ~~~A~~~~~~al~~~p~~~~~~~~~~ 859 (967)
.+...+..+++.+..|+.........
T Consensus 123 l~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 123 LESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999998665554444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0009 Score=46.27 Aligned_cols=32 Identities=22% Similarity=0.133 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 002100 917 LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNH 948 (967)
Q Consensus 917 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~ 948 (967)
+++.+|.+|..+|++++|+..|++|++++|++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 56667777777777777777777777777654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0011 Score=45.67 Aligned_cols=33 Identities=24% Similarity=0.194 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 002100 916 QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNH 948 (967)
Q Consensus 916 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~ 948 (967)
.+++.+|.++..+|++++|++.|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777777777777777777777777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0011 Score=45.75 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPSY 619 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 619 (967)
.+|+.+|.+|..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467778888888888888888888888887764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.047 Score=57.04 Aligned_cols=150 Identities=15% Similarity=0.052 Sum_probs=102.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhCc--hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHH--HHHhhcC--C
Q 002100 461 HQLGVVMLEREEYKDAQNWFKAAVEAGH--IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMY--QERSLYC--S 534 (967)
Q Consensus 461 ~~lG~~~~~~g~y~~A~~~f~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~--~~~~~y~--~ 534 (967)
+..+.-....|++.+|...|..++...+ ..+..++++++...|+.+.|..++..+-.......+.- ....... .
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 3455667778899999999999998865 56778889999999999888888887655444332222 1111110 0
Q ss_pred hHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC---ChhHHHHHHHHHHHhcCHHHHHHHHH
Q 002100 535 GKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV---SPDCLELRAWISIALEDYDGALRDVR 610 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~ 610 (967)
.---+..+++.+..+|++..+-+.+|..+...|++++|++.+-..+..+- +..+...+-.++...|.-+.+...|+
T Consensus 218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 01113567777888999999999999999999999999999888887765 44455555555555554433433333
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.006 Score=55.51 Aligned_cols=83 Identities=20% Similarity=0.224 Sum_probs=72.4
Q ss_pred chHHHHHHHHHHhCC---CHHHHHHHHHHHHh-cCCCh--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 002100 882 TYPYRYRAAVLMDDH---KEAEAIAELSRAIA-FKPDL--QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELY 955 (967)
Q Consensus 882 ~~~~~~la~~~~~~g---~~~eAi~~~~kal~-~~p~~--~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~ 955 (967)
....+++|+++.+.. +..+.+..++..++ -.|+. +.++.+|..+.++++|++++++++..|+..|+|.++.++-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 566788999998874 56788999999997 45552 4888899999999999999999999999999999999999
Q ss_pred HHHHhhhhh
Q 002100 956 DKATERVNE 964 (967)
Q Consensus 956 ~r~~~~~~~ 964 (967)
+.+++++++
T Consensus 112 ~~ied~itk 120 (149)
T KOG3364|consen 112 ETIEDKITK 120 (149)
T ss_pred HHHHHHHhh
Confidence 999998864
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0031 Score=65.96 Aligned_cols=103 Identities=16% Similarity=0.128 Sum_probs=89.5
Q ss_pred ccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCC----CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHH
Q 002100 518 DYTPVGWMYQERSLYCSGKEKMMDLNTATELDPT----LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELR 592 (967)
Q Consensus 518 ~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~l 592 (967)
.|...|+-|++-.+| ..|+..|.+.|+..-. ++..|.++|.+.+..|+|..|+....+++.++| +..+++.-
T Consensus 83 n~KeeGN~~fK~Kry---k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRY---KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHhHHHHHhhhH---HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 445568888888888 9999999999987433 346789999999999999999999999999999 89999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 593 AWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 593 a~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
|.+++.++.+++|...++..+..+.+...+.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEAKKAI 190 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 9999999999999999999988876655444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.81 Score=50.32 Aligned_cols=439 Identities=13% Similarity=0.079 Sum_probs=235.7
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHH--HHHHhcCChHHHHHHHHHHHhccCc-
Q 002100 445 RLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVA--RTKFKRGHKYSAYKLMNSLISDYTP- 521 (967)
Q Consensus 445 ~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la--~~~~~~g~~~~A~~~l~~~i~~~~~- 521 (967)
++.+.++++|.+...|++|-..+-.++.+++-.+.|++...--|....++.- .-.....++...+.++.+-+....+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 6778888999999999999999999999999999999988876643333311 1112234555555666555542222
Q ss_pred chhH----HHHHhh-cC------ChHHHHHHHHHhHhhCCCCchhHHHHHHHHH---------hcCcHHHHHHHHHHHhc
Q 002100 522 VGWM----YQERSL-YC------SGKEKMMDLNTATELDPTLSYPYKYRAILLV---------EENKLAAAITEINRIIG 581 (967)
Q Consensus 522 ~g~~----~~~~~~-y~------~~~~A~~~~~~al~l~P~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~ 581 (967)
.-|+ |..+.. .. ..-+|-+..-..+-.+|.....|...+..+. ++.+.+.-...|.+++.
T Consensus 110 dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~ 189 (660)
T COG5107 110 DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ 189 (660)
T ss_pred hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence 1222 111110 00 1123333333334457777777766665442 34455666777888876
Q ss_pred cCC-ChhH-HHHHHHHHH-------------HhcCHHHHHHHHHHHHHh-------CCCchHHhhhhhhhhhHhhhHHHh
Q 002100 582 FKV-SPDC-LELRAWISI-------------ALEDYDGALRDVRALLTL-------DPSYMMFYGQLHGDNLVETLQPLV 639 (967)
Q Consensus 582 ~~p-~~~~-~~~la~~~~-------------~~g~~~~A~~~~~~al~l-------~p~~~~~~~~~~~~~~~~~l~~~~ 639 (967)
.-- +.+- |...-..-. ..--|-.|...|++...+ +|.+...+.++
T Consensus 190 tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~------------- 256 (660)
T COG5107 190 TPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKA------------- 256 (660)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccc-------------
Confidence 433 3321 111111111 111244556666665544 23222222110
Q ss_pred hchhhHhhHHHHHhhhccccc---------cchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 002100 640 QQWSQADCWMQLYDRWSSVDD---------IGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS 710 (967)
Q Consensus 640 ~~~~~A~~~~~l~~~~~~~d~---------~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~ 710 (967)
.+.... .||.. ..|...+. ...--.+.+++.-.|-.+..|+.-...+...++-+.|+...++++...|.
T Consensus 257 ~r~s~S-~WlNw-IkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps 334 (660)
T COG5107 257 ARTSDS-NWLNW-IKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS 334 (660)
T ss_pred cccccc-hhhhH-hhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc
Confidence 000000 12211 11111110 01133466788888888999999999999999999999999999988888
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCC---chHHHHHHHHHHhcCCCCCCchHH
Q 002100 711 EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPE---SSAYVIQLLEEALRCPSDGLRKGQ 787 (967)
Q Consensus 711 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~---~~~~a~~~le~~~~~~~~~~~~~~ 787 (967)
..+.++..|....+-++-..+|++.++ .....|...++..... ......+++-.-.. ...-
T Consensus 335 ---L~~~lse~yel~nd~e~v~~~fdk~~q-------~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~------k~t~ 398 (660)
T COG5107 335 ---LTMFLSEYYELVNDEEAVYGCFDKCTQ-------DLKRKYSMGESESASKVDNNFEYSKELLLKRIN------KLTF 398 (660)
T ss_pred ---hheeHHHHHhhcccHHHHhhhHHHHHH-------HHHHHHhhhhhhhhccccCCccccHHHHHHHHh------hhhh
Confidence 445566666666666666666776652 1222222221111000 01111111100000 1112
Q ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH----c
Q 002100 788 ALNNLGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLAR-VYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS----E 860 (967)
Q Consensus 788 a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~----~ 860 (967)
++.-+-..-....-.+.|...|.++-+.+ ...++..-|. -|..+|++..|...|.-.+...|+.+...+..- .
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 33322233334455778888888887733 2223333333 366789999999999999998888665433332 2
Q ss_pred cCChHHHHHHHHHhhccCCCC--chHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 861 YCDRDMAKSDLSMATQLDPMR--TYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 861 ~~~~~~A~~~l~~al~l~p~~--~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
.++-+.|...|+++++.-.+. ..+|..+-.--..-|+...++..=++..+.-|+
T Consensus 479 inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 479 INDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred hCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 377788888888776532222 223333333333346766666666666666665
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.99 E-value=1.4 Score=52.95 Aligned_cols=270 Identities=12% Similarity=0.029 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc-hhHHHH---HHHHHHhcCChHHHHHHHHH----HHhccCcc----
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH-IYSLVG---VARTKFKRGHKYSAYKLMNS----LISDYTPV---- 522 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~-~~a~~~---la~~~~~~g~~~~A~~~l~~----~i~~~~~~---- 522 (967)
+...-++.-+.-+...|...+|++. |+..+. ..+..- .+.-....++...-+...+. ++...|.+
T Consensus 345 ~~~~lH~~Aa~w~~~~g~~~eAI~h---AlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~ 421 (894)
T COG2909 345 RLKELHRAAAEWFAEHGLPSEAIDH---ALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQ 421 (894)
T ss_pred chhHHHHHHHHHHHhCCChHHHHHH---HHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHH
Confidence 3344566666667778888888876 444432 211111 11112333333322222222 22233332
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCC---------CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C-----hh
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPT---------LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S-----PD 587 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~-----~~ 587 (967)
+|......+| .+|...+.++...-|. .+..--.+|.+....|+.++|++..+.++..-| + ..
T Consensus 422 aW~~~s~~r~---~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 422 AWLLASQHRL---AEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHccCh---HHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 3444444455 7777777766654332 123345578888999999999999999998777 2 45
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHH
Q 002100 588 CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVV 667 (967)
Q Consensus 588 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~ 667 (967)
++...|.+..-.|++++|......+.+....+...+..+-+....+.+....|+-..++ . ...-....
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~----~--------~~~~~~~~ 566 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE----Q--------EKAFNLIR 566 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH----H--------HHHHHHHH
Confidence 78888999999999999999999988884444333322223344555555555322221 0 00001223
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCchhH---HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 668 HHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY----STSEHE---KLVYEGWILYDTGHREEALAKAEESIS 740 (967)
Q Consensus 668 ~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~----~p~~~~---a~~~lg~~~~~~g~~~eA~~~~~~al~ 740 (967)
.+-+...|........++.++...-+++.+.....+.++. .|.... +++.++.+++..|+.++|...+.+...
T Consensus 567 ~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 567 EQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444445554444444555554444466666666555543 233222 234789999999999999999987765
Q ss_pred cc
Q 002100 741 IQ 742 (967)
Q Consensus 741 ~~ 742 (967)
+.
T Consensus 647 l~ 648 (894)
T COG2909 647 LL 648 (894)
T ss_pred Hh
Confidence 43
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0017 Score=44.83 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 002100 586 PDCLELRAWISIALEDYDGALRDVRALLTLDPSY 619 (967)
Q Consensus 586 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 619 (967)
+.+++.+|.++..+|++++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567788888888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.12 Score=56.92 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=73.3
Q ss_pred hHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc----CCCChHHHHHHHHHHHH---hcCHHHHHHHHHH
Q 002100 631 LVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN----DPGKSLLRFRQSLLLLR---LNSQKAAMRSLRL 703 (967)
Q Consensus 631 ~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~----~p~~~~~~~~~g~~~~~---~g~~~~A~~~l~~ 703 (967)
.+-+.|...++|+.- +..++.+-.. -+..+.+.+..|.++.+ .|+.++|+..+..
T Consensus 146 ~lllSyRdiqdydam------------------I~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~ 207 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAM------------------IKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLP 207 (374)
T ss_pred HHHHHhhhhhhHHHH------------------HHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHH
Confidence 344567777777665 4444444433 34567788889999999 9999999999998
Q ss_pred -HHhcCCchhHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcccch
Q 002100 704 -ARNYSTSEHEKLVYEGWILYDT---------GHREEALAKAEESISIQRSF 745 (967)
Q Consensus 704 -al~~~p~~~~a~~~lg~~~~~~---------g~~~eA~~~~~~al~~~p~~ 745 (967)
.....+.+++.+...|.+|.+. ...++|+..|.++.+++|+.
T Consensus 208 ~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 208 VLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 5566777899999999998643 34789999999999999843
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.021 Score=60.08 Aligned_cols=87 Identities=21% Similarity=0.203 Sum_probs=76.2
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccC---C--ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhh
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFK---V--SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLH 627 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 627 (967)
+..|..-|.-|+..++|..|+..|.+.|+.. | +...|.++|.+.+.+|+|..|+.++.+++.++|.+..++
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~---- 156 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAY---- 156 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhh----
Confidence 4557778999999999999999999999864 3 566899999999999999999999999999999999999
Q ss_pred hhhhHhhhHHHhhchhhH
Q 002100 628 GDNLVETLQPLVQQWSQA 645 (967)
Q Consensus 628 ~~~~~~~l~~~~~~~~~A 645 (967)
+.-+.+...++++..|
T Consensus 157 --~R~Akc~~eLe~~~~a 172 (390)
T KOG0551|consen 157 --IRGAKCLLELERFAEA 172 (390)
T ss_pred --hhhhHHHHHHHHHHHH
Confidence 4446777888887777
|
|
| >smart00875 BACK BTB And C-terminal Kelch | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0025 Score=56.95 Aligned_cols=66 Identities=11% Similarity=0.137 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHHhhhhh--------hcCCchhHhhhhccchHHHHHHhhcchHHHHHHHHHHhccCc
Q 002100 362 AVMLIEYGLEEAAYLLVAACLQVLLRELP--------CSMQNPNVMRIFCSAEARERLAMVGHASFVLYYFLSQIGMEE 432 (967)
Q Consensus 362 ~~~~~~~A~~~~~~~L~~~c~~~i~~~~~--------~~l~~~~~~~ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~~ 432 (967)
|+.++.+|..|+++.|.+.|.+||.+||. ..++...+..++.++++. +.++..++.+++.|+..+.
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~-----v~~E~~v~~av~~W~~~~~ 74 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLN-----VPSEEEVFEAVLRWVKHDP 74 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCC-----CCCHHHHHHHHHHHHHCCH
Confidence 45688889999999999999999999988 345566777788888876 6678899999999999764
|
The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0027 Score=66.86 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=75.7
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHH
Q 002100 464 GVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLN 543 (967)
Q Consensus 464 G~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~ 543 (967)
+.-.+..|++++|++.|..++.++|..+..+.- .+.++.++.+. ..|+.++.
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~k-------------------------r~sv~lkl~kp---~~airD~d 172 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAK-------------------------RASVFLKLKKP---NAAIRDCD 172 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhccc-------------------------ccceeeeccCC---chhhhhhh
Confidence 344556777888888888888877765544422 25566666655 78888888
Q ss_pred HhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHH
Q 002100 544 TATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDG 604 (967)
Q Consensus 544 ~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~ 604 (967)
.|++++|+.+..|..++.+...+|+|++|..++..+.+++-+..+-..+-.+.-+.+..++
T Consensus 173 ~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e 233 (377)
T KOG1308|consen 173 FAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEE 233 (377)
T ss_pred hhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhh
Confidence 8888888888888888888888888888888888887776544333333333333333333
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.84 Score=54.72 Aligned_cols=209 Identities=18% Similarity=0.064 Sum_probs=133.4
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS---------EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAF 748 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~---------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 748 (967)
|.+....+.......++.+|...+.++...-+. ..+.....|.+....|++++|++..+.++..-|...
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~-- 492 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA-- 492 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc--
Confidence 445566777788888888888888777654333 123344567777788999999999998887666332
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH----H----H
Q 002100 749 FLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT----R----A 820 (967)
Q Consensus 749 ~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~----~----a 820 (967)
......++..+|.+..-.|++++|..+...+.+.... . +
T Consensus 493 ---------------------------------~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~ 539 (894)
T COG2909 493 ---------------------------------YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWS 539 (894)
T ss_pred ---------------------------------chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 0122246677888888899999999888888774222 1 4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHH
Q 002100 821 HQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE 900 (967)
Q Consensus 821 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 900 (967)
....+.+...+|+...| ...++... ...+-+...|-.......++.++...-+++.
T Consensus 540 ~~~~s~il~~qGq~~~a--~~~~~~~~----------------------~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~ 595 (894)
T COG2909 540 LLQQSEILEAQGQVARA--EQEKAFNL----------------------IREQHLEQKPRHEFLVRIRAQLLRAWLRLDL 595 (894)
T ss_pred HHHHHHHHHHhhHHHHH--HHHHHHHH----------------------HHHHHhhhcccchhHHHHHHHHHHHHHHHhh
Confidence 44567777777832222 22211110 0122233345555555556655555555777
Q ss_pred HHHHHHHHHhcC----CCh--H--HHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 901 AIAELSRAIAFK----PDL--Q--LLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 901 Ai~~~~kal~~~----p~~--~--~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
+.....+.++.. |.+ . .+..++.++...||.++|...+.+...+-
T Consensus 596 ~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 596 AEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred hhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 766666666543 332 1 44588999999999999999988876554
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.33 Score=49.69 Aligned_cols=174 Identities=11% Similarity=0.150 Sum_probs=119.7
Q ss_pred hcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh
Q 002100 599 LEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS 678 (967)
Q Consensus 599 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~ 678 (967)
...-..|+.....++.++|.+...+ +.+-.+...++..-..+ +..+..+++.+|++-
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW------~yRr~iL~~l~~dL~~E-----------------l~~l~eI~e~npKNY 112 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVW------QYRRVILRHLMSDLNKE-----------------LEYLDEIIEDNPKNY 112 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHH------HHHHHHHHHhHHHHHHH-----------------HHHHHHHHHhCccch
Confidence 3455668888888999999998888 33334444433222221 888999999999999
Q ss_pred HHHHHHHHHHHHhcCHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH-Hhh
Q 002100 679 LLRFRQSLLLLRLNSQK-AAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY-ALA 756 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~-~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~-~la 756 (967)
.+|..+-.+.-..|++. .-+...+.++..+..+..+|...-++...-+.++.-+++..+.++.+-.+...+...| .+.
T Consensus 113 QvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~ 192 (318)
T KOG0530|consen 113 QVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVIT 192 (318)
T ss_pred hHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEE
Confidence 99988888888888888 7888889999999999999999999999999999999999999987763332222222 222
Q ss_pred hc--CCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHh
Q 002100 757 DS--SLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVD 798 (967)
Q Consensus 757 ~~--~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~ 798 (967)
.+ ..+....+..++...+.+.. .|....+|+.|.-++..
T Consensus 193 ~~~~~~~~~~le~El~yt~~~I~~---vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 193 NTKGVISKAELERELNYTKDKILL---VPNNESAWNYLKGLLEL 233 (318)
T ss_pred eccCCccHHHHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHh
Confidence 21 11212333444444444443 34444677777666654
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.35 Score=49.52 Aligned_cols=225 Identities=12% Similarity=0.028 Sum_probs=150.8
Q ss_pred hcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHH
Q 002100 691 LNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTG-HREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVI 769 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~ 769 (967)
...-..|++..+.++.++|.+..+|...-.++..++ +..+-+.++.+.++-+|.+-
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY----------------------- 112 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY----------------------- 112 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch-----------------------
Confidence 445567777888888888888888877777666554 45566677777776666443
Q ss_pred HHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHH-HHHHHHHHHhccCcHH--HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002100 770 QLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLD-LAADCYMNALNIKHTR--AHQGLARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 770 ~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~-~A~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~~~~~~al~ 846 (967)
+.|...-.+....|++. .-++..+.++..+... +|...-.+...-+.++.-+.+....++
T Consensus 113 -----------------QvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 113 -----------------QVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLE 175 (318)
T ss_pred -----------------hHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666666666777776 6677777787755443 788888888888889999999999999
Q ss_pred HccCCHHHHHHHHcc----------CChHHHHHHHHHhhccCCCCchHHHHHHHHHHh-CC--CHHHHHHHHHHHHhcCC
Q 002100 847 KARNNASAYEKRSEY----------CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMD-DH--KEAEAIAELSRAIAFKP 913 (967)
Q Consensus 847 ~~p~~~~~~~~~~~~----------~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~-~g--~~~eAi~~~~kal~~~p 913 (967)
.+--|-++|+.|--+ -..+.-+.+....+.+.|++..+|.++..++.. .| .+.+-.......+...|
T Consensus 176 ~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~ 255 (318)
T KOG0530|consen 176 EDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLP 255 (318)
T ss_pred HhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccC
Confidence 998888888887622 124556677788899999999999999988886 44 23334444444432222
Q ss_pred C--hHHHHHHHHHH------HHcCChH---HHHHHHHHHH-hcCCCchhHHHHH
Q 002100 914 D--LQLLHLRAAFH------DSMGDHL---HTQRDCEAAL-CLDPNHTDTLELY 955 (967)
Q Consensus 914 ~--~~~~~~~a~~~------~~~g~~~---~A~~~~~~al-~~~P~~~~~l~l~ 955 (967)
. +..+--+..+| .+.+.-+ +|...|+..- +.+|-....+...
T Consensus 256 ~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~~~ 309 (318)
T KOG0530|consen 256 KRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWRHK 309 (318)
T ss_pred CCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 2 22222233333 2333444 5666676654 7777666655543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.37 Score=57.33 Aligned_cols=273 Identities=16% Similarity=0.072 Sum_probs=165.8
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhc-----CCchhHHHHHHHHHHHHcC-----C
Q 002100 663 SLAVVHHMLANDPGKSLLRFRQSLLLLR-----LNSQKAAMRSLRLARNY-----STSEHEKLVYEGWILYDTG-----H 727 (967)
Q Consensus 663 al~~~~~~l~~~p~~~~~~~~~g~~~~~-----~g~~~~A~~~l~~al~~-----~p~~~~a~~~lg~~~~~~g-----~ 727 (967)
+...++.+-+. .+......+|.+|.. ..+.+.|+..|+.+.+. .-.++.+.+.+|.+|.+-. +
T Consensus 231 a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d 308 (552)
T KOG1550|consen 231 AFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKID 308 (552)
T ss_pred HHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcccc
Confidence 35555554433 445666677777765 36899999999988761 1114567888999998743 6
Q ss_pred hHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc----ccHH
Q 002100 728 REEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC----EKLD 803 (967)
Q Consensus 728 ~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~----g~~~ 803 (967)
++.|+.+|.++.+....+..+++...-.... ......++...+..+.+. ....+.++++.+|..- .+..
T Consensus 309 ~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~--~~~d~~~A~~yy~~Aa~~-----G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 309 YEKALKLYTKAAELGNPDAQYLLGVLYETGT--KERDYRRAFEYYSLAAKA-----GHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHcCC--ccccHHHHHHHHHHHHHc-----CChHHHHHHHHHHHhCCCcCCCHH
Confidence 7889999999987776554333332221111 123344556665555433 2225666666665432 4666
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHccC----CHHHHHHHHc-c-------CChHHHHHH
Q 002100 804 LAADCYMNALNIKHTRAHQGLARVYHLK-NQRKAAYDEMTKLIEKARN----NASAYEKRSE-Y-------CDRDMAKSD 870 (967)
Q Consensus 804 ~A~~~~~~Al~~~~~~a~~~la~~~~~~-g~~~~A~~~~~~al~~~p~----~~~~~~~~~~-~-------~~~~~A~~~ 870 (967)
.|..+|.++.+.++..+...++..+..- +.+..+.-.+....+..-. ++..+..... . .+.+.+...
T Consensus 382 ~A~~~~k~aA~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHHHHHHHHccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence 7777777777766666555555554433 5555555544433332211 1112222210 1 244555555
Q ss_pred HHHhhccCCCCchHHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc---CChHHHHHHHHHHHh
Q 002100 871 LSMATQLDPMRTYPYRYRAAVLMDD----HKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSM---GDHLHTQRDCEAALC 943 (967)
Q Consensus 871 l~~al~l~p~~~~~~~~la~~~~~~----g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~ 943 (967)
+.++.. ..+..+...+|.+|..- .+++.|...|.++-... ....+++|..++.- .+...|.++|.++.+
T Consensus 462 ~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 462 YSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 555443 34556677777777664 45999999999998877 67888899888753 227899999999988
Q ss_pred cCCCc
Q 002100 944 LDPNH 948 (967)
Q Consensus 944 ~~P~~ 948 (967)
.+...
T Consensus 538 ~~~~~ 542 (552)
T KOG1550|consen 538 EDSRA 542 (552)
T ss_pred cCchh
Confidence 76654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.59 Score=52.35 Aligned_cols=145 Identities=18% Similarity=0.089 Sum_probs=91.6
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH---
Q 002100 674 DPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS----EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE--- 746 (967)
Q Consensus 674 ~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~--- 746 (967)
.......+...+.+..+.|.++.|...+.++....+. .+...+..+.++...|+..+|+..++..+.......
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 4455678889999999999999999999999886522 456788889999999999999999998886222110
Q ss_pred ---HHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc------ccHHHHHHHHHHHhccCc
Q 002100 747 ---AFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC------EKLDLAADCYMNALNIKH 817 (967)
Q Consensus 747 ---~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~------g~~~~A~~~~~~Al~~~~ 817 (967)
....... .. ....... ...........+.++..+|...... ++.++++..|.++++..+
T Consensus 222 ~~~~~~~~~~--~~-~~~~~~~---------~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 289 (352)
T PF02259_consen 222 ISNAELKSGL--LE-SLEVISS---------TNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP 289 (352)
T ss_pred ccHHHHhhcc--cc-ccccccc---------cchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence 0000000 00 0000000 0000001123346677777776666 778888888888888655
Q ss_pred HH--HHHHHHHHHHH
Q 002100 818 TR--AHQGLARVYHL 830 (967)
Q Consensus 818 ~~--a~~~la~~~~~ 830 (967)
.. ++..+|..+..
T Consensus 290 ~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 290 SWEKAWHSWALFNDK 304 (352)
T ss_pred hHHHHHHHHHHHHHH
Confidence 43 66666665544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.29 Score=53.35 Aligned_cols=157 Identities=18% Similarity=0.014 Sum_probs=109.2
Q ss_pred HHHHhHHHHHhc----ccHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHccCCH-HHHHHH
Q 002100 788 ALNNLGSVYVDC----EKLDLAADCYMNALNIKHTRAHQGLARVYHL----KNQRKAAYDEMTKLIEKARNNA-SAYEKR 858 (967)
Q Consensus 788 a~~~lg~~~~~~----g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~-~~~~~~ 858 (967)
+...++.+|... .+..+|..+|+.+.+.++..+.+.||.+|.. ..+..+|..+|.++.+..-..+ .+...+
T Consensus 75 a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l 154 (292)
T COG0790 75 ALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRL 154 (292)
T ss_pred HHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 444444444332 3567788888877777777777778877776 4477788888887777644332 223333
Q ss_pred Hc-c--C--------ChHHHHHHHHHhhccCCCCchHHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 002100 859 SE-Y--C--------DRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDD----HKEAEAIAELSRAIAFKPDLQLLHLRAA 923 (967)
Q Consensus 859 ~~-~--~--------~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~----g~~~eAi~~~~kal~~~p~~~~~~~~a~ 923 (967)
+. + + +...|...|.++.... ++.+...+|.+|..- .++++|..+|.++-+... ....+.++
T Consensus 155 ~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~~a~~~~~- 230 (292)
T COG0790 155 GLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-GAACYNLG- 230 (292)
T ss_pred HHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHH-
Confidence 31 1 2 3347888888877665 677888889887653 589999999999998887 66777778
Q ss_pred HHHHcC---------------ChHHHHHHHHHHHhcCCCc
Q 002100 924 FHDSMG---------------DHLHTQRDCEAALCLDPNH 948 (967)
Q Consensus 924 ~~~~~g---------------~~~~A~~~~~~al~~~P~~ 948 (967)
++...| +...|...+.++-...+..
T Consensus 231 ~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 231 LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 666555 8889999999888766543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.061 Score=62.41 Aligned_cols=114 Identities=14% Similarity=0.051 Sum_probs=92.0
Q ss_pred chHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 662 GSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE----HEKLVYEGWILYDTGHREEALAKAEE 737 (967)
Q Consensus 662 ~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~~~~ 737 (967)
.+...+....+..|+.....+..|.++...|+.++|++.|++++....+- .-.++.+++++..+.+|++|...+.+
T Consensus 251 ~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 251 EAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 35777888889999999999999999999999999999999988544332 34577899999999999999999999
Q ss_pred HHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccH-------HHHHHHHH
Q 002100 738 SISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKL-------DLAADCYM 810 (967)
Q Consensus 738 al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~-------~~A~~~~~ 810 (967)
..+.+.- .++...+..|.++...++. ++|.+.|.
T Consensus 331 L~~~s~W---------------------------------------Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 331 LLKESKW---------------------------------------SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFR 371 (468)
T ss_pred HHhcccc---------------------------------------HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHH
Confidence 8865542 2234566678888888888 77777777
Q ss_pred HHhc
Q 002100 811 NALN 814 (967)
Q Consensus 811 ~Al~ 814 (967)
++-.
T Consensus 372 ~vp~ 375 (468)
T PF10300_consen 372 KVPK 375 (468)
T ss_pred HHHH
Confidence 7654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00512 Skp1 Found in Skp1 protein family | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.01 Score=53.38 Aligned_cols=82 Identities=11% Similarity=0.167 Sum_probs=59.8
Q ss_pred cEEEEE-cCeEEEehhHHHhccCHHHHHhhcCCCCCC-ccceEEeccCCCCHHHHHHHHHhHcCCCC-----------C-
Q 002100 257 DMSFCI-GNDEIRCVRYKIASLSRPFRTMLYGGFIES-RREKVNFSQNGISVEAMRAAEEFSRTKML-----------D- 322 (967)
Q Consensus 257 Dv~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~-~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~-----------~- 322 (967)
.|+|+. +|.+|.+.+.+. ..|..++.|+.+.-.+. ....|.|+. |+..+|+.+++|++--.- +
T Consensus 3 ~v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~--v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~ 79 (104)
T smart00512 3 YIKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPN--VTSKILSKVIEYCEHHVDDPPSVADKDDIPT 79 (104)
T ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCC--cCHHHHHHHHHHHHHcccCCCCccccccccH
Confidence 356654 899999999977 69999999997643222 225788866 999999999999974321 1
Q ss_pred ------CCCHHHHHHHHHHhchhCh
Q 002100 323 ------SFDPRLVLELLSFANRFCC 341 (967)
Q Consensus 323 ------~~~~~~~~~ll~~A~~~~~ 341 (967)
.++.+.+.+|+.+|++++|
T Consensus 80 wD~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 80 WDAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1455667777777777664
|
Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.028 Score=59.46 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 884 PYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 884 ~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
.+.++-.+|++.++++.|+.+.+..+.+.|+.. -+.-+|.+|.++|.+..|..+++..++..|+++.+.-+..++.+-.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 345677899999999999999999999999954 5666999999999999999999999999999999888777777655
Q ss_pred hhc
Q 002100 963 NEQ 965 (967)
Q Consensus 963 ~~~ 965 (967)
.+.
T Consensus 263 ~~~ 265 (269)
T PRK10941 263 QKQ 265 (269)
T ss_pred hcC
Confidence 443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.28 E-value=1.4 Score=47.40 Aligned_cols=160 Identities=9% Similarity=-0.068 Sum_probs=91.6
Q ss_pred HhcCcHHHHHHHHHHHhccCC--C-------hhHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC----C---CchHHh-hh
Q 002100 564 VEENKLAAAITEINRIIGFKV--S-------PDCLELRAWISIALE-DYDGALRDVRALLTLD----P---SYMMFY-GQ 625 (967)
Q Consensus 564 ~~~g~~~~A~~~~~~al~~~p--~-------~~~~~~la~~~~~~g-~~~~A~~~~~~al~l~----p---~~~~~~-~~ 625 (967)
..+|+++.|...+.|+-...+ + ...++..|.-....+ +++.|...+++++++- + ..+... .+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 456778888888777755441 2 235566666677777 8888888888887762 1 111111 11
Q ss_pred hhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002100 626 LHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLAR 705 (967)
Q Consensus 626 ~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al 705 (967)
......++.++...+.++.. ..+...+..+....|+.+..+...-.++.+.++.+++.+.+.+.+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~---------------~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESV---------------EKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHHcCCChHHH---------------HHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 11113333333333222222 234666666777778888888666666666889999999999888
Q ss_pred hcCCc---hhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 706 NYSTS---EHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 706 ~~~p~---~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
..-+. +.+........+.. .....|...+.+.+
T Consensus 149 ~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l 184 (278)
T PF08631_consen 149 RSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLL 184 (278)
T ss_pred HhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHH
Confidence 76541 12222222222222 33456666666655
|
It is also involved in sporulation []. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0063 Score=41.91 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 002100 917 LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNH 948 (967)
Q Consensus 917 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~ 948 (967)
+++.+|.+|..+|++++|+..|+++++++|+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 56677777777777777777777777777743
|
... |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.22 E-value=2.3 Score=53.06 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=78.8
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCc---hhHHHHHHHHHhc-------CcHHHHHHHHHHHhccCCChhHHHHH
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLS---YPYKYRAILLVEE-------NKLAAAITEINRIIGFKVSPDCLELR 592 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~---~~~~~la~~~~~~-------g~~~~A~~~~~~al~~~p~~~~~~~l 592 (967)
+.++..-..| +.|+..|++.-.-.|... ++.+..|..+.++ ..+++|+..|++.-.-...|--|...
T Consensus 482 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (932)
T PRK13184 482 PDAFLAEKLY---DQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGK 558 (932)
T ss_pred cHHHHhhHHH---HHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhH
Confidence 4556666677 999999999988888765 4567777766553 25888999998875443378889999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 593 AWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 593 a~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
|.+|..+|+|++-++.|.-+++..|+++...
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 9999999999999999999999999988765
|
|
| >PLN03138 Protein TOC75; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0042 Score=74.07 Aligned_cols=11 Identities=0% Similarity=0.051 Sum_probs=6.4
Q ss_pred ccEEEEE-cCeE
Q 002100 256 WDMSFCI-GNDE 266 (967)
Q Consensus 256 ~Dv~~~v-~~~~ 266 (967)
-+|+|.+ ++..
T Consensus 215 v~V~~~i~Eg~~ 226 (796)
T PLN03138 215 LGLTISFTESTW 226 (796)
T ss_pred EEEEEEEEeCCc
Confidence 4677766 3443
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.49 Score=51.48 Aligned_cols=176 Identities=19% Similarity=0.090 Sum_probs=118.3
Q ss_pred HhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHc----CChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCch
Q 002100 690 RLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDT----GHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESS 765 (967)
Q Consensus 690 ~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~ 765 (967)
..+++..|...+..+-... +..+...++..|... .+..+|..+|..+.+..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g----------------------- 107 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG----------------------- 107 (292)
T ss_pred ccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc-----------------------
Confidence 4566777777777766522 225666677666543 35667777777544221
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHh----cccHHHHHHHHHHHhccCcHHH---HHHHHHHHHHhC------
Q 002100 766 AYVIQLLEEALRCPSDGLRKGQALNNLGSVYVD----CEKLDLAADCYMNALNIKHTRA---HQGLARVYHLKN------ 832 (967)
Q Consensus 766 ~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~~~~~~a---~~~la~~~~~~g------ 832 (967)
...+.+++|.+|.. ..++.+|..+|++|.+.++..+ ...++..|..-.
T Consensus 108 -------------------~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 108 -------------------LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred -------------------cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 12466677777766 4488899999999988887776 888888777642
Q ss_pred -CHHHHHHHHHHHHHHccCCHHHHHHHHc-c-------CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCC-------
Q 002100 833 -QRKAAYDEMTKLIEKARNNASAYEKRSE-Y-------CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDH------- 896 (967)
Q Consensus 833 -~~~~A~~~~~~al~~~p~~~~~~~~~~~-~-------~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g------- 896 (967)
+...|...|.++-+.. +..+...+|. | .+..+|...|.++.+... ....+.++ ++...|
T Consensus 169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~ 243 (292)
T COG0790 169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAA 243 (292)
T ss_pred HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhh
Confidence 2336888888777665 4555555552 1 578899999999988776 77777788 666555
Q ss_pred --------CHHHHHHHHHHHHhcCCC
Q 002100 897 --------KEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 897 --------~~~eAi~~~~kal~~~p~ 914 (967)
+...|...+.++....+.
T Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 244 FLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred hcccccCCCHHHHHHHHHHHHHcCCh
Confidence 666777777777666554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=3.7 Score=47.70 Aligned_cols=164 Identities=14% Similarity=0.122 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHH---
Q 002100 440 VMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLI--- 516 (967)
Q Consensus 440 ~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i--- 516 (967)
+.+.+++........+.+. +----|+|++|++.|-.+-..+- .. .++.+.|++...+.+++.--
T Consensus 724 ik~vkrl~~i~s~~~q~ae-------i~~~~g~feeaek~yld~drrDL---Ai---elr~klgDwfrV~qL~r~g~~d~ 790 (1189)
T KOG2041|consen 724 IKLVKRLRTIHSKEQQRAE-------ISAFYGEFEEAEKLYLDADRRDL---AI---ELRKKLGDWFRVYQLIRNGGSDD 790 (1189)
T ss_pred hhHHHHhhhhhhHHHHhHh-------HhhhhcchhHhhhhhhccchhhh---hH---HHHHhhhhHHHHHHHHHccCCCc
Confidence 3445555544444333333 23334889999998865543221 11 23445666666555555411
Q ss_pred ------hccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHH
Q 002100 517 ------SDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCL 589 (967)
Q Consensus 517 ------~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 589 (967)
..+.+.|..+.++..| ++|.++|.+.-. ..+...+++...+|++-. .....-| +...+
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~W---e~A~~yY~~~~~--------~e~~~ecly~le~f~~LE----~la~~Lpe~s~ll 855 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEW---EEAAKYYSYCGD--------TENQIECLYRLELFGELE----VLARTLPEDSELL 855 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccc--------hHhHHHHHHHHHhhhhHH----HHHHhcCcccchH
Confidence 1344456666666666 777777776432 234566777776666543 3333345 67778
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhH
Q 002100 590 ELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQA 645 (967)
Q Consensus 590 ~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A 645 (967)
-.+|..+...|--++|.+.|.+-- .|. +. -.....+.||.+|
T Consensus 856 p~~a~mf~svGMC~qAV~a~Lr~s--~pk---aA---------v~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 856 PVMADMFTSVGMCDQAVEAYLRRS--LPK---AA---------VHTCVELNQWGEA 897 (1189)
T ss_pred HHHHHHHHhhchHHHHHHHHHhcc--CcH---HH---------HHHHHHHHHHHHH
Confidence 888999999999999988875431 222 11 1235667788888
|
|
| >PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0078 Score=63.64 Aligned_cols=92 Identities=22% Similarity=0.263 Sum_probs=75.2
Q ss_pred CeEEEehhHHHhccCHHHHHhhcCCCCCC-ccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHHHHHHHHhchhChH
Q 002100 264 NDEIRCVRYKIASLSRPFRTMLYGGFIES-RREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVLELLSFANRFCCE 342 (967)
Q Consensus 264 ~~~~~~hr~vLa~~S~~F~~~~~~~~~e~-~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ll~~A~~~~~~ 342 (967)
.+.|.|.+-.|-..=.||+..+.....++ ..++|+|+- ..+..+|+=+++|+..... .+++.+|..||.-+++++++
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV-hCDv~iF~WLm~yv~~~~p-~l~~~NvvsIliSS~FL~M~ 90 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV-HCDVHIFEWLMRYVKGEPP-SLTPSNVVSILISSEFLQME 90 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE-ecChhHHHHHHHHhhcCCC-cCCcCcEEEeEehhhhhccH
Confidence 45799999999999999999996522222 234566654 4899999999999999666 89999999999999999999
Q ss_pred HHHHHHHHHHHhhCC
Q 002100 343 ELKSACDSYLASMVS 357 (967)
Q Consensus 343 ~l~~~c~~~l~~~~~ 357 (967)
.|++.|..|+.++++
T Consensus 91 ~Lve~cl~y~~~~~~ 105 (317)
T PF11822_consen 91 SLVEECLQYCHDHMS 105 (317)
T ss_pred HHHHHHHHHHHHhHH
Confidence 999999998866654
|
This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain. |
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=3.9 Score=46.57 Aligned_cols=127 Identities=19% Similarity=0.113 Sum_probs=87.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCcchhHH--------HHHhh-----cCChHHHHHHHHHhHhhCCCCchhHHHHHHHH
Q 002100 497 RTKFKRGHKYSAYKLMNSLISDYTPVGWMY--------QERSL-----YCSGKEKMMDLNTATELDPTLSYPYKYRAILL 563 (967)
Q Consensus 497 ~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~--------~~~~~-----y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 563 (967)
.+.-..|...++...+-++....+..+.+. +.... +.+.+...+.+.......|+++.-.+..|..+
T Consensus 198 ~vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l 277 (546)
T KOG3783|consen 198 SVVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEARIL 277 (546)
T ss_pred HHHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHHHH
Confidence 344455666666666665554333322111 11111 11556666667777788999999999999999
Q ss_pred HhcCcHHHHHHHHHHHhccCC---ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 564 VEENKLAAAITEINRIIGFKV---SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 564 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
...|+.+.|+..++..+...- ..-+++.+|+++.-+.+|..|...+..+.+.+.-..-.|
T Consensus 278 ~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y 340 (546)
T KOG3783|consen 278 SIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFY 340 (546)
T ss_pred HHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHH
Confidence 999998889999998888211 355889999999999999999999998887755444444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.011 Score=40.66 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
.+++.+|.+|..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46778888888888888888888888888775
|
... |
| >KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.019 Score=61.91 Aligned_cols=8 Identities=25% Similarity=0.077 Sum_probs=4.2
Q ss_pred cchhHHHH
Q 002100 142 KSGVYLEQ 149 (967)
Q Consensus 142 ~~~~~~~~ 149 (967)
...+||-|
T Consensus 195 ~emiCLPQ 202 (641)
T KOG3915|consen 195 CELICLPQ 202 (641)
T ss_pred ceEEecHH
Confidence 34455555
|
|
| >KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.021 Score=61.85 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=69.0
Q ss_pred EEEEEcCeEEEehhHHHhccC--HHHHHhhcCCCCCCccce--EEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHHHHHH
Q 002100 258 MSFCIGNDEIRCVRYKIASLS--RPFRTMLYGGFIESRREK--VNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVLELL 333 (967)
Q Consensus 258 v~~~v~~~~~~~hr~vLa~~S--~~F~~~~~~~~~e~~~~~--i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ll 333 (967)
|.|-|||+.|.-.+.-|+... .+|-++|.+.+.-.+... |-|. =+|+.|..+|.|+.||++ +.+......++
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID---RDPdlFaviLn~LRTg~L-~~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID---RDPDLFAVILNLLRTGDL-DASGVFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec---CCchHHHHHHHHHhcCCC-CCccCchhhhh
Confidence 668999999999999997766 599999998887555443 6665 599999999999999999 56555555555
Q ss_pred H-HhchhChHHHHH
Q 002100 334 S-FANRFCCEELKS 346 (967)
Q Consensus 334 ~-~A~~~~~~~l~~ 346 (967)
. =|.+|++..|.+
T Consensus 89 hdEA~fYGl~~llr 102 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhcCcHHHHH
Confidence 5 899999998875
|
|
| >KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.021 Score=56.02 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=76.4
Q ss_pred cccEEEEEcCeEEEehhHHHhccCH--HHHHhhcCC---CCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHH
Q 002100 255 DWDMSFCIGNDEIRCVRYKIASLSR--PFRTMLYGG---FIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLV 329 (967)
Q Consensus 255 ~~Dv~~~v~~~~~~~hr~vLa~~S~--~F~~~~~~~---~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~ 329 (967)
.+-|.+.|||++|.--+--|..|=| .+.+||.+. ..|+.+.-+-|. -||.-|+-+|.|+..|.++..+.-++
T Consensus 8 ~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lID---Rsp~yFepIlNyLr~Gq~~~~s~i~~ 84 (302)
T KOG1665|consen 8 SSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLID---RSPKYFEPILNYLRDGQIPSLSDIDC 84 (302)
T ss_pred hhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEc---cCchhhHHHHHHHhcCceeecCCccH
Confidence 3568899999999988777777765 688999873 234455566665 59999999999999999976677789
Q ss_pred HHHHHHhchhChHHHHHHHHH
Q 002100 330 LELLSFANRFCCEELKSACDS 350 (967)
Q Consensus 330 ~~ll~~A~~~~~~~l~~~c~~ 350 (967)
.++|..|++|+|-.|++.-+.
T Consensus 85 lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 85 LGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHHhhHHhhHhHHhHHhh
Confidence 999999999999999988776
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.22 Score=47.83 Aligned_cols=113 Identities=19% Similarity=0.102 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHH
Q 002100 591 LRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHM 670 (967)
Q Consensus 591 ~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~ 670 (967)
..|......++.+.++..+++++.+.......-. .. ..|-... ...+...
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~----------~~---~~W~~~~-----------------r~~l~~~ 60 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDL----------DD---EEWVEPE-----------------RERLREL 60 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGG----------TT---STTHHHH-----------------HHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCC----------Cc---cHHHHHH-----------------HHHHHHH
Confidence 3455566778999999999999988654322210 00 1111110 1111111
Q ss_pred HhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 671 LANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 671 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
...+...++..+...|++++|+..+++++..+|.+-.++..+-.+|...|+..+|++.|++..
T Consensus 61 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 61 ------YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp ------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 123455677888999999999999999999999999999999999999999999999998875
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.19 Score=48.30 Aligned_cols=61 Identities=16% Similarity=0.099 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
.+...++..+...|++++|+..+++++..+| +..++..+-.+|...|+..+|++.|++...
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3456678889999999999999999999999 899999999999999999999999988754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.016 Score=39.38 Aligned_cols=32 Identities=16% Similarity=0.009 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 002100 917 LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNH 948 (967)
Q Consensus 917 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~ 948 (967)
+++.+|.++..+|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56777778888888888888888888777764
|
|
| >PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.053 Score=43.38 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=43.8
Q ss_pred EEEEE-cCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc
Q 002100 258 MSFCI-GNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR 317 (967)
Q Consensus 258 v~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y 317 (967)
|+|+- +|+.|.+.+.++ ..|..++.||.+...+.. .|.++. |+..+++.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl~~--v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPLPN--VSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEETT--S-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--ccccCc--cCHHHHHHHHHHHH
Confidence 55654 899999998776 699999999986433333 789976 99999999999986
|
It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.02 Score=40.11 Aligned_cols=28 Identities=21% Similarity=0.534 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 002100 459 AFHQLGVVMLEREEYKDAQNWFKAAVEA 486 (967)
Q Consensus 459 a~~~lG~~~~~~g~y~~A~~~f~~al~~ 486 (967)
++..||.+|...|+|++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4778999999999999999999998765
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.12 Score=44.87 Aligned_cols=77 Identities=14% Similarity=0.030 Sum_probs=58.4
Q ss_pred HHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC---ChhHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002100 537 EKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV---SPDCLELRAWISIALEDYDGALRDVRALL 613 (967)
Q Consensus 537 ~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al 613 (967)
..+..++++++.+|++..+.+.+|..++..|++++|++.+-.++..++ +..+...+-.++..+|.-+.-...|++-|
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999998 35566666677777777655555555433
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.52 E-value=4.7 Score=53.66 Aligned_cols=67 Identities=15% Similarity=0.002 Sum_probs=58.8
Q ss_pred CCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 878 DPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 878 ~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
+......|...|.+..+.|+++-|-.++-+|.+.. .++++..+|..+++.|+-..|+..+++.++++
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 34457889999999999999999999999998877 45688899999999999999999999999765
|
|
| >KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.11 Score=50.03 Aligned_cols=92 Identities=11% Similarity=0.145 Sum_probs=69.7
Q ss_pred cCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCC--------------------
Q 002100 263 GNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLD-------------------- 322 (967)
Q Consensus 263 ~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~-------------------- 322 (967)
+|+.|.+-..++ ..|..+++++...=.......|.|+. |...+|..|++|++.-+-+
T Consensus 13 DG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~n--V~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLPN--VTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccCc--cCHHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 788888887665 77888888886421111115688864 9999999999999974321
Q ss_pred ----CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCC
Q 002100 323 ----SFDPRLVLELLSFANRFCCEELKSACDSYLASMVS 357 (967)
Q Consensus 323 ----~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~ 357 (967)
.++..++.+|+.+|+++++++|.+.|.+.++..+.
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mik 128 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIK 128 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHc
Confidence 23445788999999999999999999988888874
|
|
| >KOG0511 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.018 Score=60.91 Aligned_cols=87 Identities=11% Similarity=0.046 Sum_probs=67.3
Q ss_pred CcccEEEEE-cCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHHHHH
Q 002100 254 EDWDMSFCI-GNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVLEL 332 (967)
Q Consensus 254 ~~~Dv~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~l 332 (967)
...|++|.+ +|+.|-|||..|++||.+|..-+..-+ .+..+|+-.. +-+.+|..+++|+|-..- .+-++.-..|
T Consensus 148 ~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~--v~~~~f~~flk~lyl~~n-a~~~~qynal 222 (516)
T KOG0511|consen 148 CCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHR--VILSAFSPFLKQLYLNTN-AEWKDQYNAL 222 (516)
T ss_pred cccchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhh--hhHhhhhHHHHHHHHhhh-hhhhhHHHHH
Confidence 347999987 788999999999999998865444322 1334564444 788999999999998754 5566667899
Q ss_pred HHHhchhChHHHH
Q 002100 333 LSFANRFCCEELK 345 (967)
Q Consensus 333 l~~A~~~~~~~l~ 345 (967)
+.+..+|.++.|.
T Consensus 223 lsi~~kF~~e~l~ 235 (516)
T KOG0511|consen 223 LSIEVKFSKEKLS 235 (516)
T ss_pred HhhhhhccHHHhH
Confidence 9999999998775
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.17 Score=45.16 Aligned_cols=106 Identities=16% Similarity=0.174 Sum_probs=67.3
Q ss_pred HHHHHHH--HHHHhhcCChHHHHHHHHHHHHh----------Cc----hhHHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 002100 457 QLAFHQL--GVVMLEREEYKDAQNWFKAAVEA----------GH----IYSLVGVARTKFKRGHKYSAYKLMNSLISDYT 520 (967)
Q Consensus 457 a~a~~~l--G~~~~~~g~y~~A~~~f~~al~~----------~~----~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~ 520 (967)
+.+|..| |.-.+..|-|++|...+.+|+.. ++ ...+.+|+..+...|++++++.....++..+.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 3444444 44456778999999999999987 12 34567788888888888877765555554444
Q ss_pred cchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhc
Q 002100 521 PVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIG 581 (967)
Q Consensus 521 ~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 581 (967)
..|...+.-+.. -+.+-+.+|..+...|+.++|+..|+.+-+
T Consensus 87 RRGEL~qdeGkl-------------------WIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 87 RRGELHQDEGKL-------------------WIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HH--TTSTHHHH-------------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hccccccccchh-------------------HHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 444333332210 123457788888889999999988887754
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.028 Score=38.18 Aligned_cols=32 Identities=31% Similarity=0.337 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
++++.+|.++...|++++|+..|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 35677777777777777777777777777776
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.38 E-value=4.4 Score=43.66 Aligned_cols=227 Identities=11% Similarity=0.046 Sum_probs=126.4
Q ss_pred HHHhcCHHHHHHHHHHHHhcC----Cch----hHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcccchHHHHHHHHHhhhc
Q 002100 688 LLRLNSQKAAMRSLRLARNYS----TSE----HEKLVYEGWILYDTG-HREEALAKAEESISIQRSFEAFFLKAYALADS 758 (967)
Q Consensus 688 ~~~~g~~~~A~~~l~~al~~~----p~~----~~a~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~ 758 (967)
..++|+++.|...+.++-... |+. ...+++.|......+ ++++|..+++++.++-.... ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~----------~~ 72 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPG----------KM 72 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhh----------hc
Confidence 356789999999998876543 443 346778888888999 99999999999986632100 00
Q ss_pred CCCCCchHHHHHHHHHHhcCCCC-CCchHHHHHHhHHHHHhcccHHH---HHHHHHHHhc--cCcHHHHHHHHHHHHHhC
Q 002100 759 SLNPESSAYVIQLLEEALRCPSD-GLRKGQALNNLGSVYVDCEKLDL---AADCYMNALN--IKHTRAHQGLARVYHLKN 832 (967)
Q Consensus 759 ~~~~~~~~~a~~~le~~~~~~~~-~~~~~~a~~~lg~~~~~~g~~~~---A~~~~~~Al~--~~~~~a~~~la~~~~~~g 832 (967)
.....+ .......+..++.+|...+.++. |....+.+.. ++++..+..--.+..+.+
T Consensus 73 -----------------~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~ 135 (278)
T PF08631_consen 73 -----------------DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSF 135 (278)
T ss_pred -----------------cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccC
Confidence 000000 01233577788888888777653 3333333433 333443323233333378
Q ss_pred CHHHHHHHHHHHHHHcc-CCHHHHHHHH---cc--CChHHHHHHHHHhhc--cCCCCchHHHHHHH---HHHhCC--CHH
Q 002100 833 QRKAAYDEMTKLIEKAR-NNASAYEKRS---EY--CDRDMAKSDLSMATQ--LDPMRTYPYRYRAA---VLMDDH--KEA 899 (967)
Q Consensus 833 ~~~~A~~~~~~al~~~p-~~~~~~~~~~---~~--~~~~~A~~~l~~al~--l~p~~~~~~~~la~---~~~~~g--~~~ 899 (967)
+.+++.+.+.+++...+ .....-.... .+ .....|...+...+. .+|.... +..... +++..+ +..
T Consensus 136 ~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~ 214 (278)
T PF08631_consen 136 DEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLS 214 (278)
T ss_pred ChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCcccc
Confidence 88888888888887654 1111111111 11 344556666655543 2333221 332222 222222 222
Q ss_pred HH--HHHHHHHHh----c-----CCCh-----HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 900 EA--IAELSRAIA----F-----KPDL-----QLLHLRAAFHDSMGDHLHTQRDCEAAL 942 (967)
Q Consensus 900 eA--i~~~~kal~----~-----~p~~-----~~~~~~a~~~~~~g~~~~A~~~~~~al 942 (967)
.. ++..+..++ . .+.. ..+.+.|.-.++.++|++|..+|+-++
T Consensus 215 ~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 215 SSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred chhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 333322222 1 1111 145668999999999999999999876
|
It is also involved in sporulation []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.35 E-value=5.8 Score=43.95 Aligned_cols=120 Identities=17% Similarity=0.051 Sum_probs=84.1
Q ss_pred HhCCHHHHHHHHHHHHHHccCCHHHHHHHH--c---cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHH
Q 002100 830 LKNQRKAAYDEMTKLIEKARNNASAYEKRS--E---YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAE 904 (967)
Q Consensus 830 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~--~---~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~ 904 (967)
+..-.+.|...|.++-+..--...+|..-+ + .+++.-|-..|+-.+...|+++..-...-..+...++-+.|...
T Consensus 409 r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraL 488 (660)
T COG5107 409 RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARAL 488 (660)
T ss_pred HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHH
Confidence 334456666777666554322223333322 2 28888899999999999998877666666677888999999999
Q ss_pred HHHHHhcCCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 002100 905 LSRAIAFKPDL---QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 905 ~~kal~~~p~~---~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~ 949 (967)
|+++++.-.+. .+|...-..-..-|+...+...=++..++.|+..
T Consensus 489 Fetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 489 FETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 99888654443 2555555666667888888888888888888764
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.34 E-value=6 Score=44.06 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=48.8
Q ss_pred HHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 559 RAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 559 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
-|..++.+|+|.++.-.-.=..++.|++.++.++|.+.....+|++|...+...
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 356788999999999999999999999999999999999999999999987653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.045 Score=47.14 Aligned_cols=9 Identities=22% Similarity=0.128 Sum_probs=3.9
Q ss_pred HHhhhhccC
Q 002100 12 TMRSLKIID 20 (967)
Q Consensus 12 ~~~~~~~~~ 20 (967)
+++||--.+
T Consensus 35 FF~Tl~~p~ 43 (91)
T PF10961_consen 35 FFQTLFSPD 43 (91)
T ss_pred HHHHHhCCC
Confidence 344444443
|
It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell []. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.075 Score=40.72 Aligned_cols=37 Identities=32% Similarity=0.389 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
++++.+|..++++|+|++|....+.+|+.+|+|..+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 5678888888999999999999999999999988777
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.1 Score=50.18 Aligned_cols=78 Identities=17% Similarity=0.014 Sum_probs=61.5
Q ss_pred HhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhc---------c-----CC-------------C---hhHHHHHHHH
Q 002100 546 TELDPTLSYPYKYRAILLVEENKLAAAITEINRIIG---------F-----KV-------------S---PDCLELRAWI 595 (967)
Q Consensus 546 l~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------~-----~p-------------~---~~~~~~la~~ 595 (967)
++.+|....++..++.++..+|+.+.|.+.+++|+- + ++ | -.+++.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 456789999999999999999999999888888852 1 11 1 1255666777
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCC-chHHh
Q 002100 596 SIALEDYDGALRDVRALLTLDPS-YMMFY 623 (967)
Q Consensus 596 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~ 623 (967)
..+.|-+..|++..+-++.++|. ++...
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ 141 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGV 141 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchh
Confidence 88899999999999999999999 55443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.059 Score=55.84 Aligned_cols=62 Identities=21% Similarity=0.307 Sum_probs=36.7
Q ss_pred HhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHH
Q 002100 893 MDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLEL 954 (967)
Q Consensus 893 ~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l 954 (967)
.+.|+.++|...|+.|+++.|+ ++++...|.+....++.-+|-.+|-+||.++|.|.+++-.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 3456666666666666666665 3455556666666666666666666666666666555443
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=94.82 E-value=13 Score=46.76 Aligned_cols=136 Identities=21% Similarity=0.120 Sum_probs=79.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHh
Q 002100 593 AWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLA 672 (967)
Q Consensus 593 a~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~ 672 (967)
-..+++.+.|++|+..|+++-...|.-..-+..+ +..|..... +|. ..-...+-..|+..|++.-
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~- 546 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQ---FRLGITLLE-----KAS------EQGDPRDFTQALSEFSYLH- 546 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHH---HHhhHHHHH-----HHH------hcCChHHHHHHHHHHHHhc-
Confidence 3445566677777777777777666554443211 222221111 110 0000000112355555543
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHc-----CChHHHHHHHHHHHhccc
Q 002100 673 NDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDT-----GHREEALAKAEESISIQR 743 (967)
Q Consensus 673 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~-----g~~~eA~~~~~~al~~~p 743 (967)
..|.-|.-|...+.+|.++|++++-+++|..|++..|+.|+.-...-.+-+++ .+...|....--++..-|
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (932)
T PRK13184 547 GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAP 622 (932)
T ss_pred CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 35777889999999999999999999999999999999886543333222222 233455566666666666
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.045 Score=38.27 Aligned_cols=25 Identities=24% Similarity=0.137 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 918 LHLRAAFHDSMGDHLHTQRDCEAAL 942 (967)
Q Consensus 918 ~~~~a~~~~~~g~~~~A~~~~~~al 942 (967)
+..+|.+|..+|++++|+..|+++|
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.84 Score=50.33 Aligned_cols=83 Identities=12% Similarity=-0.080 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcC------------HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHH
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNS------------QKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEA 731 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~------------~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA 731 (967)
...+++.++.+|.+...|..+....-..-. .+..+..|++|++.+|++...+..+-.+..+..+.++.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 455677788888888888776655444322 34556688888888888888877777777777888888
Q ss_pred HHHHHHHHhcccchH
Q 002100 732 LAKAEESISIQRSFE 746 (967)
Q Consensus 732 ~~~~~~al~~~p~~~ 746 (967)
.+.+++++..+|+..
T Consensus 85 ~~~we~~l~~~~~~~ 99 (321)
T PF08424_consen 85 AKKWEELLFKNPGSP 99 (321)
T ss_pred HHHHHHHHHHCCCCh
Confidence 888888888888655
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.46 Score=47.29 Aligned_cols=81 Identities=19% Similarity=0.173 Sum_probs=63.9
Q ss_pred HHhhhccccccchHHHHHHHHhcC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHc
Q 002100 651 LYDRWSSVDDIGSLAVVHHMLAND-PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS----EHEKLVYEGWILYDT 725 (967)
Q Consensus 651 l~~~~~~~d~~~al~~~~~~l~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~----~~~a~~~lg~~~~~~ 725 (967)
+|.+|+...|..|+..|-++-... -+.+.+.+.+|..|. ..+.++|+..+-+++++.+. +++.+..++.+++.+
T Consensus 113 lYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 113 LYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred HHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 466788877777777776654432 245778888888777 78999999999999998655 478999999999999
Q ss_pred CChHHHH
Q 002100 726 GHREEAL 732 (967)
Q Consensus 726 g~~~eA~ 732 (967)
|+++.|-
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 9999874
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.77 Score=41.10 Aligned_cols=101 Identities=17% Similarity=0.129 Sum_probs=66.5
Q ss_pred HHHHHhHH--HHHhcccHHHHHHHHHHHhccC----------cH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002100 787 QALNNLGS--VYVDCEKLDLAADCYMNALNIK----------HT----RAHQGLARVYHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 787 ~a~~~lg~--~~~~~g~~~~A~~~~~~Al~~~----------~~----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
.+|..|+. -.+..|-|++|...+++|++.. |. ..|..|+.++..+|+|++++..-.+++.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~---- 83 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR---- 83 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----
Confidence 45666544 4456688999999999998822 11 2688899999999999999888776664
Q ss_pred CHHHHHHHHccCChHHHHHHHHHhhccCCCCc----hHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002100 851 NASAYEKRSEYCDRDMAKSDLSMATQLDPMRT----YPYRYRAAVLMDDHKEAEAIAELSRAIA 910 (967)
Q Consensus 851 ~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~----~~~~~la~~~~~~g~~~eAi~~~~kal~ 910 (967)
+|++-=+++.+.. .+.+++|..+...|+.++|+..|+.+-+
T Consensus 84 -------------------YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 84 -------------------YFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp -------------------HHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -------------------HHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 2222223333322 2344677778888888888888887754
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.47 E-value=2.1 Score=47.16 Aligned_cols=86 Identities=13% Similarity=0.031 Sum_probs=62.7
Q ss_pred HHHHHHHhHhhCCCCchhHHHHHHHHHhcCc------------HHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHH
Q 002100 538 KMMDLNTATELDPTLSYPYKYRAILLVEENK------------LAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDG 604 (967)
Q Consensus 538 A~~~~~~al~l~P~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~ 604 (967)
-...|++.++.+|.+..+|..+....-..-. .+.-+..|++|++.+| +...+..+-.+..+..+.++
T Consensus 4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Confidence 3457888999999999999888865544422 3455667778887777 66666666666667777777
Q ss_pred HHHHHHHHHHhCCCchHHh
Q 002100 605 ALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 605 A~~~~~~al~l~p~~~~~~ 623 (967)
..+.+++++..+|++...|
T Consensus 84 l~~~we~~l~~~~~~~~LW 102 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELW 102 (321)
T ss_pred HHHHHHHHHHHCCCChHHH
Confidence 7777888888877777776
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.22 Score=43.19 Aligned_cols=49 Identities=18% Similarity=0.111 Sum_probs=42.0
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 002100 867 AKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL 915 (967)
Q Consensus 867 A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~ 915 (967)
.+..++++++.+|++..+.+.+|..++..|++++|++.+-.+++.+++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4567888999999999999999999999999999999999999998874
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.56 Score=48.14 Aligned_cols=97 Identities=19% Similarity=0.297 Sum_probs=66.3
Q ss_pred hcCHHHHHHHHHHHHhc------CC-chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCC
Q 002100 691 LNSQKAAMRSLRLARNY------ST-SEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPE 763 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~------~p-~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~ 763 (967)
...+++|+..|..|+-. .| .-+..+..+||+|..+|+.+.....+++|+. .|..++.-.+.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~-------~y~~a~~~e~~----- 157 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALE-------FYEEAYENEDF----- 157 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH-------HHHHHHHhCcC-----
Confidence 45677777777766532 11 2255678899999999998888888888773 33333321111
Q ss_pred chHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 764 SSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 764 ~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
+.........++.+|.++...|++++|+.+|.+++.
T Consensus 158 ---------------~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 158 ---------------PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred ---------------CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 111223345788899999999999999999999998
|
|
| >PLN03138 Protein TOC75; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.025 Score=67.76 Aligned_cols=18 Identities=11% Similarity=-0.008 Sum_probs=8.7
Q ss_pred CcccccCCCcccHHHHHH
Q 002100 112 PQIEPCLKFVDFVETLAD 129 (967)
Q Consensus 112 p~~~~~~~~~~~~~~~~~ 129 (967)
+-+|+|=-|++.+-.|..
T Consensus 124 ~~~~~~~~~~~~~~~~~~ 141 (796)
T PLN03138 124 GDWDSHGLPVNITVPLSK 141 (796)
T ss_pred CCCccccCcccceEechh
Confidence 445555555554433333
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.012 Score=67.83 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=6.4
Q ss_pred hchhhHHHHHh
Q 002100 4 KMQQNFFTTMR 14 (967)
Q Consensus 4 ~~~~~~~~~~~ 14 (967)
|+.+||.+-+|
T Consensus 432 kt~~NI~~lik 442 (556)
T PF05918_consen 432 KTTNNILALIK 442 (556)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHhhHHHHHH
Confidence 56666665543
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.28 E-value=1.2 Score=42.76 Aligned_cols=50 Identities=14% Similarity=-0.020 Sum_probs=30.0
Q ss_pred cCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 002100 877 LDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHD 926 (967)
Q Consensus 877 l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~ 926 (967)
-+|-...+...||..-.+.|++.+|..+|.+...-...+....+++.+..
T Consensus 162 ~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~ml 211 (221)
T COG4649 162 GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQIML 211 (221)
T ss_pred CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHHHH
Confidence 34555556666777777777777777777776653333444555555443
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.24 E-value=1.5 Score=49.09 Aligned_cols=146 Identities=14% Similarity=-0.004 Sum_probs=87.9
Q ss_pred HHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCC---------------------chHHhhhhhhhh
Q 002100 578 RIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTL-----DPS---------------------YMMFYGQLHGDN 630 (967)
Q Consensus 578 ~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l-----~p~---------------------~~~~~~~~~~~~ 630 (967)
..+...| ..+++..++.++..+|+++.|.+.++++|-. .|. |...+..+ +
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal---~ 107 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL---F 107 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH---H
Confidence 3457789 8999999999999999999999999998743 111 11111100 1
Q ss_pred hHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC-ChH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 002100 631 LVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG-KSL-LRFRQSLLLLRLNSQKAAMRSLRLARNYS 708 (967)
Q Consensus 631 ~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~-~~~-~~~~~g~~~~~~g~~~~A~~~l~~al~~~ 708 (967)
.........|-|..| ++..+-.+.++|. ++. +.+.+=...++.++|+--+..++......
T Consensus 108 r~i~~L~~RG~~rTA------------------lE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~ 169 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTA------------------LEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKC 169 (360)
T ss_pred HHHHHHHhcCcHHHH------------------HHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhh
Confidence 112222223333333 7777777777777 554 33334444456666666666555544311
Q ss_pred C-----chhHHHHHHHHHHHHcCCh---------------HHHHHHHHHHHhcccc
Q 002100 709 T-----SEHEKLVYEGWILYDTGHR---------------EEALAKAEESISIQRS 744 (967)
Q Consensus 709 p-----~~~~a~~~lg~~~~~~g~~---------------~eA~~~~~~al~~~p~ 744 (967)
. .-|..-+..+.+++..++. ++|...+.+|+...|.
T Consensus 170 ~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 170 YRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 1 1123455666667777766 7777777777777773
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.94 Score=40.42 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=32.4
Q ss_pred HHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 571 AAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 571 ~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
.+++.|.++..+.| .+..++.+|.-+-....|++++.-.+++|..
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 35677777888887 6667777777766677777777777777654
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.28 Score=51.99 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
..++-.+|.+.++++.|+...+.++.+.| ++.-+.-+|.+|.++|.+..|..+++..++..|+++.+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 45666789999999999999999999999 898999999999999999999999999999999999887
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=19 Score=43.75 Aligned_cols=138 Identities=9% Similarity=-0.061 Sum_probs=84.2
Q ss_pred HHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCCh-H--HH-HH
Q 002100 796 YVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDR-D--MA-KS 869 (967)
Q Consensus 796 ~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~--~A-~~ 869 (967)
....++++.+...+...-. .......+.+|+++..+|+.++|...|+++.. +.+-........+|.. . .. ..
T Consensus 322 Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~fYG~LAa~~Lg~~~~~~~~~~~ 399 (644)
T PRK11619 322 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRGFYPMVAAQRLGEEYPLKIDKAP 399 (644)
T ss_pred HHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCcHHHHHHHHcCCCCCCCCCCCC
Confidence 3456677766666655322 22334788888888888999999999888744 2222111111122211 0 00 00
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 870 DLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAA 941 (967)
Q Consensus 870 ~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~a 941 (967)
.-...+. ......++..+...|+..+|...+..++.. .++.....++.+....|.++.|+....++
T Consensus 400 ~~~~~~~-----~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 400 KPDSALT-----QGPEMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred chhhhhc-----cChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 0001111 123456788888999999999999888876 44556667788888889888887766544
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.78 Score=47.02 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=42.7
Q ss_pred hcCHHHHHHHHHHHHhcCCchh----HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 691 LNSQKAAMRSLRLARNYSTSEH----EKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~~~----~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
..++++|+..|++++++.++-. .++..+-.+++.+|++++-...|.+.+
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4588999999999999988753 477788899999999999999999887
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.15 Score=53.04 Aligned_cols=66 Identities=14% Similarity=0.051 Sum_probs=56.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHH
Q 002100 825 ARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAA 890 (967)
Q Consensus 825 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~ 890 (967)
|.-..+.|+.++|...|..++.++|.+++++...|.+ ++.-+|-.+|-+|+.++|.+..++.+++.
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3345678999999999999999999999999988864 67788899999999999999998888774
|
|
| >COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.44 Score=42.65 Aligned_cols=97 Identities=16% Similarity=0.164 Sum_probs=70.0
Q ss_pred ccEEEE-EcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCC------------
Q 002100 256 WDMSFC-IGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLD------------ 322 (967)
Q Consensus 256 ~Dv~~~-v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~------------ 322 (967)
|-|.++ ++|+.|.+.+ .+|-||-..+.|+... ....+.++-++++..+|+.+++|+-..+-.
T Consensus 2 s~i~l~s~dge~F~vd~-~iAerSiLikN~l~d~----~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rk 76 (158)
T COG5201 2 SMIELESIDGEIFRVDE-NIAERSILIKNMLCDS----TACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRK 76 (158)
T ss_pred CceEEEecCCcEEEehH-HHHHHHHHHHHHhccc----cccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhc
Confidence 345554 5788888876 5678999999988632 222233444569999999999999643221
Q ss_pred ------------CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCC
Q 002100 323 ------------SFDPRLVLELLSFANRFCCEELKSACDSYLASMVS 357 (967)
Q Consensus 323 ------------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~ 357 (967)
.++.+++.++.-+|+++.++-|.+.|...++..+.
T Consensus 77 s~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 77 SKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred cCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 22345678899999999999999999888888775
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.53 E-value=3 Score=42.95 Aligned_cols=115 Identities=11% Similarity=0.063 Sum_probs=68.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCc------------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Q 002100 683 RQSLLLLRLNSQKAAMRSLRLARNYSTS------------EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFL 750 (967)
Q Consensus 683 ~~g~~~~~~g~~~~A~~~l~~al~~~p~------------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 750 (967)
.+|.+|+..++|..-.+.+++.-..... -.+.|...-..|-.+.+-.+-...|++++.+....+
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP---- 225 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP---- 225 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC----
Confidence 5788888888888877777665433211 123344445566666666666677777775543211
Q ss_pred HHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHH-hHHHHHhcccHHHHHHHHHHHhc----cCcHH-----H
Q 002100 751 KAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNN-LGSVYVDCEKLDLAADCYMNALN----IKHTR-----A 820 (967)
Q Consensus 751 ~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~-lg~~~~~~g~~~~A~~~~~~Al~----~~~~~-----a 820 (967)
+|...-.... =|..+...|++++|-..|-+|.+ .+.++ -
T Consensus 226 -------------------------------HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLK 274 (440)
T KOG1464|consen 226 -------------------------------HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLK 274 (440)
T ss_pred -------------------------------chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHH
Confidence 1111111111 25667888999999888888876 22221 4
Q ss_pred HHHHHHHHHHhC
Q 002100 821 HQGLARVYHLKN 832 (967)
Q Consensus 821 ~~~la~~~~~~g 832 (967)
+..||..+++.|
T Consensus 275 YLVLANMLmkS~ 286 (440)
T KOG1464|consen 275 YLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHcC
Confidence 666777777765
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.96 Score=46.42 Aligned_cols=95 Identities=19% Similarity=0.054 Sum_probs=62.9
Q ss_pred HhcccHHHHHHHHHHHhc------cCcH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHH
Q 002100 797 VDCEKLDLAADCYMNALN------IKHT---RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMA 867 (967)
Q Consensus 797 ~~~g~~~~A~~~~~~Al~------~~~~---~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A 867 (967)
.....+++|++.|.-|+- ..+. ..+..+|.+|..+|+.+.....+++|++.
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~-------------------- 147 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEF-------------------- 147 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH--------------------
Confidence 345567888888877765 1222 26788999999999987777777766653
Q ss_pred HHHHHHhhccCCC------CchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 868 KSDLSMATQLDPM------RTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 868 ~~~l~~al~l~p~------~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
|.++++.... .....+.+|.+..+.|++++|+.+|.+++.....
T Consensus 148 ---y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 148 ---YEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred ---HHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 4444433211 1345666777777777777777777777765433
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.24 Score=55.82 Aligned_cols=91 Identities=20% Similarity=0.151 Sum_probs=83.7
Q ss_pred ChHHHHHHHHHhHhhCCCCc-hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLS-YPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRA 611 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~ 611 (967)
+...|++++..|+...|... ....++|.+....+-.-.|-..+.+++.+.. .|-.++.+|+.|+.+.+.+.|++.+++
T Consensus 622 n~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~ 701 (886)
T KOG4507|consen 622 NSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQ 701 (886)
T ss_pred CcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHH
Confidence 77999999999999999754 4688999999999999999999999999988 788999999999999999999999999
Q ss_pred HHHhCCCchHHhh
Q 002100 612 LLTLDPSYMMFYG 624 (967)
Q Consensus 612 al~l~p~~~~~~~ 624 (967)
+++++|+++....
T Consensus 702 a~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 702 ALKLTTKCPECEN 714 (886)
T ss_pred HHhcCCCChhhHH
Confidence 9999999988773
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.98 Score=40.30 Aligned_cols=105 Identities=15% Similarity=0.133 Sum_probs=63.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHH
Q 002100 824 LARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIA 903 (967)
Q Consensus 824 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~ 903 (967)
+|.-++..|++-+|++.++..+...+++...|..... +..-.++.|...+..+....+.+ .|++
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~-----QG~if~~lA~~ten~d~k~~yLl-----------~sve 65 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRL-----QGTIFYKLAKKTENPDVKFRYLL-----------GSVE 65 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHH-----HhHHHHHHHHhccCchHHHHHHH-----------HhHH
Confidence 4677888999999999999999988876644322211 11112233333332223332223 3667
Q ss_pred HHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 904 ELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 904 ~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
.|.++..+.|... .++.+|.-+....-|+++..-.+++|.+
T Consensus 66 ~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 66 CFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 7777777777743 5666666665566667777777776654
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.13 Score=33.80 Aligned_cols=31 Identities=32% Similarity=0.199 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002100 917 LLHLRAAFHDSMGDHLHTQRDCEAALCLDPN 947 (967)
Q Consensus 917 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~ 947 (967)
++..+|.++..++++++|...+++++.++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455666666666666666666666666554
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.26 E-value=14 Score=39.74 Aligned_cols=267 Identities=13% Similarity=0.063 Sum_probs=140.6
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcc--CC-C--------hhHHHHHHHHHHHhcCHHHHHHHHHHH---HHhCCCchHH
Q 002100 557 KYRAILLVEENKLAAAITEINRIIGF--KV-S--------PDCLELRAWISIALEDYDGALRDVRAL---LTLDPSYMMF 622 (967)
Q Consensus 557 ~~la~~~~~~g~~~~A~~~~~~al~~--~p-~--------~~~~~~la~~~~~~g~~~~A~~~~~~a---l~l~p~~~~~ 622 (967)
..++......+++++++..|..++.. .| + .+....++.++...|++++=....... +..-+.-..+
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 55666777778888888888888874 11 1 336777888888888877654433322 1111111111
Q ss_pred hhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccc--cchHHHHHHHHhcCCCC------hHHHHHHHHHHHHhcCH
Q 002100 623 YGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDD--IGSLAVVHHMLANDPGK------SLLRFRQSLLLLRLNSQ 694 (967)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~--~~al~~~~~~l~~~p~~------~~~~~~~g~~~~~~g~~ 694 (967)
. ..+.+ .+.....++ ..-+......++-.... ..+-.++..+|...++|
T Consensus 88 K------lvR~L-----------------vd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~Y 144 (411)
T KOG1463|consen 88 K------LVRSL-----------------VDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRY 144 (411)
T ss_pred H------HHHHH-----------------HHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHH
Confidence 0 00000 011100000 00122222222211110 01223567778888888
Q ss_pred HHHHHHHHHHHh----cC--CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHH
Q 002100 695 KAAMRSLRLARN----YS--TSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYV 768 (967)
Q Consensus 695 ~~A~~~l~~al~----~~--p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a 768 (967)
.+|+......+. .+ +.-.+.+.....+|+...+..+|...+..|-.....
T Consensus 145 teAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Ana------------------------ 200 (411)
T KOG1463|consen 145 TEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANA------------------------ 200 (411)
T ss_pred HHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcc------------------------
Confidence 888886655443 22 223456666777777777777777776655422110
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc----cC-cHH---HHHHHHHHHHHhCCHHHHHHH
Q 002100 769 IQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN----IK-HTR---AHQGLARVYHLKNQRKAAYDE 840 (967)
Q Consensus 769 ~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----~~-~~~---a~~~la~~~~~~g~~~~A~~~ 840 (967)
.-+++. ..+..=..=|..+....+|..|-.+|-+|++ .+ +.. ++..+-.+-...+..++--..
T Consensus 201 -------iYcpPq--lQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~l 271 (411)
T KOG1463|consen 201 -------IYCPPQ--LQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAAL 271 (411)
T ss_pred -------cccCHH--HHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 000000 0111222337777788999999999999998 22 233 333344444556666654444
Q ss_pred HH--HHHHHccCCHHHHHHHHc------cCChHHHHHHHHHhhccCC
Q 002100 841 MT--KLIEKARNNASAYEKRSE------YCDRDMAKSDLSMATQLDP 879 (967)
Q Consensus 841 ~~--~al~~~p~~~~~~~~~~~------~~~~~~A~~~l~~al~l~p 879 (967)
+. .+++....+.++....+. +.+|+.|+..|..-+..||
T Consensus 272 ls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 272 LSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 33 455544445555544442 2567778888877777665
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.58 Score=43.02 Aligned_cols=71 Identities=23% Similarity=0.242 Sum_probs=60.6
Q ss_pred chhHHHHHHHHHhcC---cHHHHHHHHHHHhc-cCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 553 SYPYKYRAILLVEEN---KLAAAITEINRIIG-FKV--SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 553 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
....+++|.++.... +..+.+..++..++ ..| .-++.+.+|.-+++.++|+.++.+.+..++.+|+|..+.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 345677888887654 46688999999997 555 678999999999999999999999999999999998887
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.17 Score=33.31 Aligned_cols=31 Identities=35% Similarity=0.384 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 588 CLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 588 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
++..+|.++..++++++|+..++++++.+|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666665554
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.03 E-value=19 Score=40.78 Aligned_cols=87 Identities=10% Similarity=-0.091 Sum_probs=57.8
Q ss_pred CCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCchhHHHH
Q 002100 879 PMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSM----GDHLHTQRDCEAALCLDPNHTDTLEL 954 (967)
Q Consensus 879 p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~~P~~~~~l~l 954 (967)
|+....-...-..+.+.+-+.+|.+.|.+...+-|-.-.++ ++.+.+.. -+...+..+|+.|+.....+++++--
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~-r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~ 535 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLF-RKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMD 535 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHH-HHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 44444444455566777888899999988887776643333 33333322 24677888888888888888888877
Q ss_pred HHHHHhhhhhcC
Q 002100 955 YDKATERVNEQQ 966 (967)
Q Consensus 955 ~~r~~~~~~~~~ 966 (967)
|-+.+...+.++
T Consensus 536 y~~~e~~~g~~e 547 (568)
T KOG2396|consen 536 YMKEELPLGRPE 547 (568)
T ss_pred HHHhhccCCCcc
Confidence 777666554443
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.88 E-value=14 Score=38.68 Aligned_cols=51 Identities=24% Similarity=0.127 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHhccCC---------ChhHHHHHHHHHHHhcCHHHHHH
Q 002100 557 KYRAILLVEENKLAAAITEINRIIGFKV---------SPDCLELRAWISIALEDYDGALR 607 (967)
Q Consensus 557 ~~la~~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~la~~~~~~g~~~~A~~ 607 (967)
..+|.-..+.+++++|+..|.+++.... ...+...++.+|...|++..--+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 4567777888999999999999987622 23477888999999998765433
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.22 Score=49.84 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=39.3
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHH
Q 002100 892 LMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTL 952 (967)
Q Consensus 892 ~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l 952 (967)
..+.++.+.|.+.|++++++.|+. ..|+.+|....+.|+++.|.+.|++.++++|.+....
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ga 66 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGA 66 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccch
Confidence 344566666666667776666663 3666666666667777777777777777766655443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.65 E-value=26 Score=41.21 Aligned_cols=194 Identities=9% Similarity=-0.055 Sum_probs=108.4
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchh
Q 002100 445 RLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGW 524 (967)
Q Consensus 445 ~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~ 524 (967)
...++++++|. ...|..++...+..-+++-|+..|-++-........-.|..++.+. ...+.
T Consensus 681 dA~qfiEdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~-----------------~q~ae 742 (1189)
T KOG2041|consen 681 DAIQFIEDNPH-PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKE-----------------QQRAE 742 (1189)
T ss_pred HHHHHHhcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHH-----------------HHhHh
Confidence 34455555554 3456777777777777788887776654332211111111111100 00011
Q ss_pred HHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC---ChhHHHHHHHHHHHhcC
Q 002100 525 MYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV---SPDCLELRAWISIALED 601 (967)
Q Consensus 525 ~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~ 601 (967)
+ .+-|+.+++|...|-.+-..+ .--..+...|+|-.-.+.++.--.-+. -.+++..+|..+..+..
T Consensus 743 i---~~~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~ 811 (1189)
T KOG2041|consen 743 I---SAFYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMME 811 (1189)
T ss_pred H---hhhhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 1 123445577777665543321 112345667777777776655332222 35688999999999999
Q ss_pred HHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH
Q 002100 602 YDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR 681 (967)
Q Consensus 602 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~ 681 (967)
|++|.++|.+.-.. .....++..+++|+. ++.....-|++..+.
T Consensus 812 We~A~~yY~~~~~~--------------e~~~ecly~le~f~~----------------------LE~la~~Lpe~s~ll 855 (1189)
T KOG2041|consen 812 WEEAAKYYSYCGDT--------------ENQIECLYRLELFGE----------------------LEVLARTLPEDSELL 855 (1189)
T ss_pred HHHHHHHHHhccch--------------HhHHHHHHHHHhhhh----------------------HHHHHHhcCcccchH
Confidence 99999988764221 111233333333322 223334457777788
Q ss_pred HHHHHHHHHhcCHHHHHHHHHH
Q 002100 682 FRQSLLLLRLNSQKAAMRSLRL 703 (967)
Q Consensus 682 ~~~g~~~~~~g~~~~A~~~l~~ 703 (967)
-.+|..+...|.-++|...|-+
T Consensus 856 p~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 856 PVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHhhchHHHHHHHHHh
Confidence 8888888888888888876643
|
|
| >PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.39 Score=41.46 Aligned_cols=14 Identities=29% Similarity=0.240 Sum_probs=7.7
Q ss_pred hHHHHHhhhhccCC
Q 002100 8 NFFTTMRSLKIIDG 21 (967)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (967)
-||.||=+-.....
T Consensus 34 lFF~Tl~~p~~~~~ 47 (91)
T PF10961_consen 34 LFFQTLFSPDSSRS 47 (91)
T ss_pred HHHHHHhCCCcccc
Confidence 35666655555554
|
It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell []. |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.38 E-value=7.7 Score=41.20 Aligned_cols=189 Identities=11% Similarity=-0.031 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCC
Q 002100 682 FRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLN 761 (967)
Q Consensus 682 ~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~ 761 (967)
+.+-+...+..+..+-++.-..+++++|+.+.+|..++.-- .--..+|.+.++++++..... +.+.-.+......
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~---yr~sqq~qh~~~~ 262 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETI---YRQSQQCQHQSPQ 262 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHH---HhhHHHHhhhccc
Confidence 34445556677788888888899999999998888876532 233557788888877543311 1000010000000
Q ss_pred CCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH----HHHHHHHHHHHhCCHHHH
Q 002100 762 PESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR----AHQGLARVYHLKNQRKAA 837 (967)
Q Consensus 762 ~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~----a~~~la~~~~~~g~~~~A 837 (967)
. +...+ .+..-.......++.+..++|+..+|++.|+...+.-+.. ++-+|-..+....-|...
T Consensus 263 ----~------da~~r--RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADv 330 (556)
T KOG3807|consen 263 ----H------EAQLR--RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADV 330 (556)
T ss_pred ----h------hhhhh--cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 0011112344567899999999999999999888744432 444444444443333222
Q ss_pred HHHHHHHHHH-ccCC--------------------HHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHH
Q 002100 838 YDEMTKLIEK-ARNN--------------------ASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRY 887 (967)
Q Consensus 838 ~~~~~~al~~-~p~~--------------------~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~ 887 (967)
...+.+.-++ .|.. ++.-..+|.-.--..|++.+.+|++.+|.-+..+..
T Consensus 331 qavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE 401 (556)
T KOG3807|consen 331 QAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLE 401 (556)
T ss_pred HHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHH
Confidence 2222111111 0121 222222332223345777777888888776655443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.23 E-value=14 Score=41.83 Aligned_cols=255 Identities=19% Similarity=0.173 Sum_probs=132.4
Q ss_pred ChHHHHHHHHHHHHhhCCChhhHHHHHHHHH-HhChHHHHHHHHHHHhhhhhhcCCchhHhhhhccchHHHHHHhhcchH
Q 002100 340 CCEELKSACDSYLASMVSDIEDAVMLIEYGL-EEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCSAEARERLAMVGHAS 418 (967)
Q Consensus 340 ~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~-~~~~~~L~~~c~~~i~~~~~~~l~~~~~~~ll~s~~~~~r~~~~~~e~ 418 (967)
-++.++..|.++|+..-+ +++.++.-+. .+.-..|-+.|+--+..-|....... +++-+|..-+. ++...
T Consensus 29 ~~~~~~~ic~~hl~~~k~---si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~-~veh~c~~~l~-----~~e~k 99 (711)
T COG1747 29 ILDVLKGICDEHLAHSKN---SIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKNQ-IVEHLCTRVLE-----YGESK 99 (711)
T ss_pred HHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhhccccchHHHHHHHHhccchHHH-HHHHHHHHHHH-----hcchH
Confidence 356789999999998744 5555555444 34444566778766666665554433 34444433333 55555
Q ss_pred HHHHHHHHHhccCcccccchHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHh-CchhHHHHHHH
Q 002100 419 FVLYYFLSQIGMEEDMKSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEA-GHIYSLVGVAR 497 (967)
Q Consensus 419 ~~l~~~l~~l~~~~~~~~~~~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~-~~~~a~~~la~ 497 (967)
-.++..+.-... + .......+.+++.+..-++ +.--..|+..|.+ .+-+.+..+|.+|+.. =|..-..++-.
T Consensus 100 mal~el~q~y~e--n-~n~~l~~lWer~ve~dfnD---vv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~e 172 (711)
T COG1747 100 MALLELLQCYKE--N-GNEQLYSLWERLVEYDFND---VVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKE 172 (711)
T ss_pred HHHHHHHHHHHh--c-CchhhHHHHHHHHHhcchh---HHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHH
Confidence 555554444432 2 3455667777777654433 2333355555544 8889999999998865 12111111111
Q ss_pred H-----HHhcCChHHHHHHHHHHHhccC-cchhH-HHHH-hhcC---ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhc
Q 002100 498 T-----KFKRGHKYSAYKLMNSLISDYT-PVGWM-YQER-SLYC---SGKEKMMDLNTATELDPTLSYPYKYRAILLVEE 566 (967)
Q Consensus 498 ~-----~~~~g~~~~A~~~l~~~i~~~~-~~g~~-~~~~-~~y~---~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 566 (967)
+ .+.-.+.+.-+....++..... ..+.+ ++.. ..|. +.++|+..+.-.++.+..+..+...+-..+...
T Consensus 173 vWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~ 252 (711)
T COG1747 173 VWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDK 252 (711)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHH
Confidence 1 1122233333333333333111 11221 1111 1221 446666666666666666655554443322211
Q ss_pred CcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 567 NKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 567 g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
-+--. +.+-|.....+-..-.++-.|+..|++.+..+..+-.++
T Consensus 253 y~~~~-------------~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnFVfH 296 (711)
T COG1747 253 YRGHS-------------QLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNFVFH 296 (711)
T ss_pred hccch-------------hHHHHHHhcchhhccccHHHHHHHHHHHheeccCceEEe
Confidence 00000 222333334444445678888999999988877765544
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.42 Score=53.47 Aligned_cols=82 Identities=18% Similarity=0.082 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHc-------cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHH
Q 002100 833 QRKAAYDEMTKLIEKARNNASAYEKRSE-------YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAEL 905 (967)
Q Consensus 833 ~~~~A~~~~~~al~~~p~~~~~~~~~~~-------~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~ 905 (967)
....|+..|.+++...|.....|..++. .++.-.|+.+-..|++++|....+++.++.++...+++.+|+...
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 3555666666666666665555555441 155566666666666666666666666666666666666666666
Q ss_pred HHHHhcCCC
Q 002100 906 SRAIAFKPD 914 (967)
Q Consensus 906 ~kal~~~p~ 914 (967)
..+....|.
T Consensus 469 ~alq~~~Pt 477 (758)
T KOG1310|consen 469 WALQMSFPT 477 (758)
T ss_pred HHHhhcCch
Confidence 555555553
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.57 Score=52.41 Aligned_cols=86 Identities=17% Similarity=0.087 Sum_probs=78.0
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhc---CcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEE---NKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRA 611 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~ 611 (967)
..|+..|.+++...|.....|.++|.++++. |+.-.|+.....++.++| ...+++.++.+...++.+.+|+.+...
T Consensus 391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~a 470 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWA 470 (758)
T ss_pred HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Confidence 7889999999999999999999999999886 567789999999999999 788999999999999999999999998
Q ss_pred HHHhCCCchH
Q 002100 612 LLTLDPSYMM 621 (967)
Q Consensus 612 al~l~p~~~~ 621 (967)
+....|.+..
T Consensus 471 lq~~~Ptd~a 480 (758)
T KOG1310|consen 471 LQMSFPTDVA 480 (758)
T ss_pred HhhcCchhhh
Confidence 8888886543
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.89 E-value=3.1 Score=47.81 Aligned_cols=126 Identities=20% Similarity=0.110 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHH--Hc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHH
Q 002100 833 QRKAAYDEMTKLIEKARNNASAYEKR--SE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELS 906 (967)
Q Consensus 833 ~~~~A~~~~~~al~~~p~~~~~~~~~--~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~ 906 (967)
....++..+...+..+|.++...... +. .+....+...+..++..+|++..++.++|..+...|....++..+.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33335555555556666666654333 32 2666777888888889999999999999988888888777777776
Q ss_pred H-HHhcCCChH-HHHH------HHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 002100 907 R-AIAFKPDLQ-LLHL------RAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKA 958 (967)
Q Consensus 907 k-al~~~p~~~-~~~~------~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~ 958 (967)
. +....|++. .... .+.....+|+..++...++++.++.|.++.++..+.-.
T Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 126 EIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 6 777777742 2222 58888888999999999999999999988776654443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.32 Score=34.93 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 002100 457 QLAFHQLGVVMLEREEYKDAQNWFKAAVEA 486 (967)
Q Consensus 457 a~a~~~lG~~~~~~g~y~~A~~~f~~al~~ 486 (967)
+.++..+|.+|..+|+|++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457889999999999999999999999986
|
|
| >KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.66 Score=43.71 Aligned_cols=100 Identities=7% Similarity=-0.026 Sum_probs=73.3
Q ss_pred CcccEEEEEcCeEEEehhHHHhccCHHH-HHhhcCCCC---CCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHH
Q 002100 254 EDWDMSFCIGNDEIRCVRYKIASLSRPF-RTMLYGGFI---ESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLV 329 (967)
Q Consensus 254 ~~~Dv~~~v~~~~~~~hr~vLa~~S~~F-~~~~~~~~~---e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~ 329 (967)
...-|.|-|||..|.--|.-|.--+.-| ..+.+..+. .....---+-| -+|.-|--||.|+..|++ .++.-.-
T Consensus 19 ~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlID--RDP~~FgpvLNylRhgkl-vl~~l~e 95 (210)
T KOG2715|consen 19 VSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLID--RDPFYFGPVLNYLRHGKL-VLNKLSE 95 (210)
T ss_pred ceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEec--cCcchHHHHHHHHhcchh-hhhhhhh
Confidence 3456888899999999999998888555 555554321 11112233333 688999999999999999 6777556
Q ss_pred HHHHHHhchhChHHHHHHHHHHHHhhC
Q 002100 330 LELLSFANRFCCEELKSACDSYLASMV 356 (967)
Q Consensus 330 ~~ll~~A~~~~~~~l~~~c~~~l~~~~ 356 (967)
..+|.=|++|.++.|+.+....+.+..
T Consensus 96 eGvL~EAefyn~~~li~likd~i~dRd 122 (210)
T KOG2715|consen 96 EGVLEEAEFYNDPSLIQLIKDRIQDRD 122 (210)
T ss_pred hccchhhhccCChHHHHHHHHHHHHHh
Confidence 688999999999999877666665554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.28 E-value=19 Score=41.82 Aligned_cols=51 Identities=22% Similarity=0.109 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 682 FRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESIS 740 (967)
Q Consensus 682 ~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 740 (967)
...+..+.++..+.-|.+.|++.-. ...+...+...+++++|....++--+
T Consensus 751 ~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 751 LLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcc
Confidence 3344444444555555555544311 11233444555666666655554433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.24 E-value=8.7 Score=37.22 Aligned_cols=140 Identities=12% Similarity=-0.020 Sum_probs=79.2
Q ss_pred HHhcCcHHHHHHHHHHHhccCC-C--hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHh
Q 002100 563 LVEENKLAAAITEINRIIGFKV-S--PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLV 639 (967)
Q Consensus 563 ~~~~g~~~~A~~~~~~al~~~p-~--~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~ 639 (967)
+.+.++.++|+..|..+-+..- + .-+.+..|.+..+.|+...|+..|..+-.-.|........ +-..-+.+....
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~--ARlraa~lLvD~ 145 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDL--ARLRAAYLLVDN 145 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHH--HHHHHHHHHhcc
Confidence 3455677888888877765554 2 3466777888888888888888888876654432222100 001112223333
Q ss_pred hchhhHhhHHHHHhhhccccccchHHHHHH-HHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHH
Q 002100 640 QQWSQADCWMQLYDRWSSVDDIGSLAVVHH-MLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYE 718 (967)
Q Consensus 640 ~~~~~A~~~~~l~~~~~~~d~~~al~~~~~-~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~l 718 (967)
+-|++- -...+. +-+.+|-...+.-.+|..-++.|++..|...|..... +...+....+.
T Consensus 146 gsy~dV------------------~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqR 206 (221)
T COG4649 146 GSYDDV------------------SSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQR 206 (221)
T ss_pred ccHHHH------------------HHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHH
Confidence 333322 000100 1122344455666778888888888888888887766 44445555555
Q ss_pred HHHHH
Q 002100 719 GWILY 723 (967)
Q Consensus 719 g~~~~ 723 (967)
+.+..
T Consensus 207 Aq~ml 211 (221)
T COG4649 207 AQIML 211 (221)
T ss_pred HHHHH
Confidence 55544
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.09 E-value=25 Score=37.87 Aligned_cols=241 Identities=17% Similarity=0.132 Sum_probs=136.3
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCc----chhHHH---HHh
Q 002100 458 LAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTP----VGWMYQ---ERS 530 (967)
Q Consensus 458 ~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~----~g~~~~---~~~ 530 (967)
.....+|..+.+.|++++=....+... |.+...+-+ ++.++.+.+++.++. .|.... +--
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~R---pf~~~v~Ka----------kaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cI 115 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLR---PFLSSVSKA----------KAAKLVRSLVDMFLKIDDGTGDQIELCTECI 115 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHH---HHHHHhhhH----------HHHHHHHHHHHHHccCCCCcchHHHHHHHHH
Confidence 455677777888877776655554332 222333322 244555555553321 111000 000
Q ss_pred hcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhcc----CC---ChhHHHHHHHHHHHhcCHH
Q 002100 531 LYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGF----KV---SPDCLELRAWISIALEDYD 603 (967)
Q Consensus 531 ~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p---~~~~~~~la~~~~~~g~~~ 603 (967)
.| --.+-...+++.++ ..+...|+..++|.+|+......+.. +. -.+.+..-...|.++.+..
T Consensus 116 eW-A~~ekRtFLRq~Le---------arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~ 185 (411)
T KOG1463|consen 116 EW-AKREKRTFLRQSLE---------ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLP 185 (411)
T ss_pred HH-HHHHhHHHHHHHHH---------HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcch
Confidence 11 01222233444433 35788999999999999988877642 22 3567777788999999999
Q ss_pred HHHHHHHHHHHh-----CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC--
Q 002100 604 GALRDVRALLTL-----DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG-- 676 (967)
Q Consensus 604 ~A~~~~~~al~l-----~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~-- 676 (967)
+|...+..|-.. .|-...+. .+..-|.++....+|..| ..+|..+++-...
T Consensus 186 KakasLTsART~AnaiYcpPqlQa~----lDLqSGIlha~ekDykTa------------------fSYFyEAfEgf~s~~ 243 (411)
T KOG1463|consen 186 KAKASLTSARTTANAIYCPPQLQAT----LDLQSGILHAAEKDYKTA------------------FSYFYEAFEGFDSLD 243 (411)
T ss_pred hHHHHHHHHHHhhcccccCHHHHHH----HHHhccceeecccccchH------------------HHHHHHHHccccccC
Confidence 998888776544 12111111 123445666666777777 5555555553321
Q ss_pred -ChHH-----HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH--HcCChHHHHHHHHHHHhccc
Q 002100 677 -KSLL-----RFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILY--DTGHREEALAKAEESISIQR 743 (967)
Q Consensus 677 -~~~~-----~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~--~~g~~~eA~~~~~~al~~~p 743 (967)
+..+ |..+..+.+.+-+--.++-.-+.+++....+.+++...+.++. .+.+|+.|+..|+.-+..+|
T Consensus 244 ~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 244 DDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred CcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 1111 2223333332323333444456677777777888888877765 35688899999998888887
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.53 E-value=4 Score=40.56 Aligned_cols=64 Identities=17% Similarity=0.104 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhC----c-hhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 002100 454 WQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAG----H-IYSLVGVARTKFKRGHKYSAYKLMNSLIS 517 (967)
Q Consensus 454 ~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~----~-~~a~~~la~~~~~~g~~~~A~~~l~~~i~ 517 (967)
.....++..+|..|.+.|++++|+++|.++.+.. + ......+.++....|++......+.++-.
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445788899999999999999999999988872 2 44556667777777777766666655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.50 E-value=1.7 Score=41.73 Aligned_cols=70 Identities=16% Similarity=0.080 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYD 603 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~ 603 (967)
+.+++...+...--+.|..+..-..-|.+++..|+|.+|+..++.+....| .+.+--+++.|+..++|.+
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 346666666666677888888888888889999999999999988887777 7888888888888888764
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=90.37 E-value=27 Score=37.08 Aligned_cols=166 Identities=17% Similarity=0.093 Sum_probs=81.5
Q ss_pred hcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhh
Q 002100 469 EREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATEL 548 (967)
Q Consensus 469 ~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l 548 (967)
.+++|++|++.+.... ....+.|+...|.++..-+++.+...+.. ..++.+..+.+.+..
T Consensus 2 ~~kky~eAidLL~~Ga------------~~ll~~~Q~~sg~DL~~lliev~~~~~~~--------~~~~~~~rl~~l~~~ 61 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGA------------LILLKHGQYGSGADLALLLIEVYEKSEDP--------VDEESIARLIELISL 61 (260)
T ss_dssp HTT-HHHHHHHHHHHH------------HHHHHTT-HHHHHHHHHHHHHHHHHTT-----------SHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH------------HHHHHCCCcchHHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHh
Confidence 4678888888765443 33444445444444444444433221110 113344555555554
Q ss_pred CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhh
Q 002100 549 DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV--SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQL 626 (967)
Q Consensus 549 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 626 (967)
-|...... . .=.+.|++.- + -.-.| +++.+..+|..|.+.+++.+|..+|-.. ++.....
T Consensus 62 ~~~~~p~r---~------~fi~~ai~WS-~-~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~-- 123 (260)
T PF04190_consen 62 FPPEEPER---K------KFIKAAIKWS-K-FGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFA-- 123 (260)
T ss_dssp S-TT-TTH---H------HHHHHHHHHH-H-TSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHH--
T ss_pred CCCCcchH---H------HHHHHHHHHH-c-cCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHH--
Confidence 44332211 1 1123444444 2 23344 8999999999999999999998877432 2222220
Q ss_pred hhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHH-HHHhcCHHHHHHHHHHHH
Q 002100 627 HGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLL-LLRLNSQKAAMRSLRLAR 705 (967)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~-~~~~g~~~~A~~~l~~al 705 (967)
+. .-.+....+..|.....+..++.+ |+..++...|...+....
T Consensus 124 ---------~~--------------------------~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 124 ---------YV--------------------------MLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp ---------HH--------------------------HHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred ---------HH--------------------------HHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 00 001111223345555666555544 677899998888776665
Q ss_pred hc
Q 002100 706 NY 707 (967)
Q Consensus 706 ~~ 707 (967)
+.
T Consensus 169 ~~ 170 (260)
T PF04190_consen 169 SK 170 (260)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
; PDB: 3LKU_E 2WPV_G. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.34 E-value=26 Score=36.77 Aligned_cols=251 Identities=14% Similarity=0.069 Sum_probs=133.1
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhCc----------hhHHHHHHHHHHhcCChHHHHH-------------------HH
Q 002100 462 QLGVVMLEREEYKDAQNWFKAAVEAGH----------IYSLVGVARTKFKRGHKYSAYK-------------------LM 512 (967)
Q Consensus 462 ~lG~~~~~~g~y~~A~~~f~~al~~~~----------~~a~~~la~~~~~~g~~~~A~~-------------------~l 512 (967)
.+++-..+.+++++|+..|.+.+..+. ..+...+..+|...|++..--+ .+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 345556667788888888887776621 3345566677777776542222 22
Q ss_pred HHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCc------hhHHHHHHHHHhcCcHHHHHHHHHHHhcc----
Q 002100 513 NSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLS------YPYKYRAILLVEENKLAAAITEINRIIGF---- 582 (967)
Q Consensus 513 ~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 582 (967)
+.+++.++..... .+.-+..++..++-....- ..-..+...++..|+|.+|+..++..+..
T Consensus 88 rtLiekf~~~~ds---------l~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~ 158 (421)
T COG5159 88 RTLIEKFPYSSDS---------LEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY 158 (421)
T ss_pred HHHHHhcCCCCcc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 2333333322111 1222222222222111100 11234677899999999999988876532
Q ss_pred C--C-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhh
Q 002100 583 K--V-SPDCLELRAWISIALEDYDGALRDVRALLTL-----DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDR 654 (967)
Q Consensus 583 ~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~ 654 (967)
+ | -.+.+..-..+|....+..++...+..+-.. .|....+. .+.+-|.+...-.+|..|
T Consensus 159 DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~----lDL~sGIlhcdd~dyktA--------- 225 (421)
T COG5159 159 DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQ----LDLLSGILHCDDRDYKTA--------- 225 (421)
T ss_pred cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHH----HHHhccceeeccccchhH---------
Confidence 2 2 3567788889999999998888877766544 33322222 113344555555566666
Q ss_pred hccccccchHHHHHHHHhcCCC---Ch-----HHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCchhHHHHHHHHHHH--
Q 002100 655 WSSVDDIGSLAVVHHMLANDPG---KS-----LLRFRQSLLLLRLNSQKAAMRSLRLARN-YSTSEHEKLVYEGWILY-- 723 (967)
Q Consensus 655 ~~~~d~~~al~~~~~~l~~~p~---~~-----~~~~~~g~~~~~~g~~~~A~~~l~~al~-~~p~~~~a~~~lg~~~~-- 723 (967)
-.+|-.+++-... +. .-|..++.+.....+--.|+-.-+..++ .+....+++...+..+-
T Consensus 226 ---------~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NR 296 (421)
T COG5159 226 ---------SSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNR 296 (421)
T ss_pred ---------HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCC
Confidence 4555555543321 11 1122333333322222222222223333 23334556655555553
Q ss_pred HcCChHHHHHHHHHHHhccc
Q 002100 724 DTGHREEALAKAEESISIQR 743 (967)
Q Consensus 724 ~~g~~~eA~~~~~~al~~~p 743 (967)
.+.+|..|++.|+.-+.-+|
T Consensus 297 sL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 297 SLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred cHhhHHHHHHHhhHHhccCH
Confidence 45678899999988776666
|
|
| >COG4371 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.5 Score=47.39 Aligned_cols=11 Identities=27% Similarity=0.006 Sum_probs=5.5
Q ss_pred HhHhhHhhhhh
Q 002100 180 IVLAAWLRFER 190 (967)
Q Consensus 180 ~~~~~w~~~~~ 190 (967)
..+.+|.--||
T Consensus 214 ~qfn~lAl~eR 224 (334)
T COG4371 214 NQFNALALEER 224 (334)
T ss_pred HHHHHHHHHHH
Confidence 34566644443
|
|
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.35 Score=51.76 Aligned_cols=130 Identities=14% Similarity=0.054 Sum_probs=90.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHH
Q 002100 824 LARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIA 903 (967)
Q Consensus 824 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~ 903 (967)
.+.-.++.+++..|..-|.+++..... ...- +..+... +...+.+.....+.+++.+-.+.+.+..|+.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~-------~s~~-~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~ 296 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSE-------QSRD-REKEQEN---RIPPLRELRFSIRRNLAAVGLKVKGRGGARF 296 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcc-------cccc-ccccccc---ccccccccccccccchHHhcccccCCCccee
Confidence 344566777777777777766653221 0000 0000000 1222334445566678889999999999998
Q ss_pred HHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhhh
Q 002100 904 ELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNE 964 (967)
Q Consensus 904 ~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~~ 964 (967)
.-.-+++.++. ..+++.++..+....++++|+++++.+....|++.++.+.+..+....++
T Consensus 297 ~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 297 RTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred ccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 88888886666 34899999999999999999999999999999999998877766655543
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.10 E-value=11 Score=43.32 Aligned_cols=149 Identities=14% Similarity=0.070 Sum_probs=101.5
Q ss_pred hcccHHHHHHHHHHHhc--------------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----c----------
Q 002100 798 DCEKLDLAADCYMNALN--------------IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEK-----A---------- 848 (967)
Q Consensus 798 ~~g~~~~A~~~~~~Al~--------------~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-----~---------- 848 (967)
....|++|...|.-|+. +-|.+.+..+|.+...+|+.+-|.+...+++=. .
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 44567788888877765 223458888999999999988888877766532 1
Q ss_pred ------cCCHHHHHHHHc-------cCChHHHHHHHHHhhccCCC-CchHHHHHHHHHHh-CCCHHHHHHHHHHH-----
Q 002100 849 ------RNNASAYEKRSE-------YCDRDMAKSDLSMATQLDPM-RTYPYRYRAAVLMD-DHKEAEAIAELSRA----- 908 (967)
Q Consensus 849 ------p~~~~~~~~~~~-------~~~~~~A~~~l~~al~l~p~-~~~~~~~la~~~~~-~g~~~eAi~~~~ka----- 908 (967)
|.|-..|..+-. -|=...|.+..+..++++|. ++.+...+-.+|.- ..+|+=-|..++..
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 223333332221 17788899999999999998 88887777776654 35565555555444
Q ss_pred HhcCCChHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCC
Q 002100 909 IAFKPDLQLLHLRAAFHDSMGD---HLHTQRDCEAALCLDP 946 (967)
Q Consensus 909 l~~~p~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~P 946 (967)
+..-|+...-..+|.+|..... .+.|+..+.+|+...|
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 2333443334446777777666 7889999999999988
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.09 E-value=26 Score=43.96 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=12.2
Q ss_pred hHHHHHhcccHHHHHHHHHHH
Q 002100 792 LGSVYVDCEKLDLAADCYMNA 812 (967)
Q Consensus 792 lg~~~~~~g~~~~A~~~~~~A 812 (967)
.+..|...|+.++|+.+|+.+
T Consensus 958 Aal~Ye~~GklekAl~a~~~~ 978 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYKEC 978 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHHh
Confidence 355566666666666665443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.08 E-value=8.9 Score=36.96 Aligned_cols=64 Identities=22% Similarity=0.244 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 683 RQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 683 ~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
....+-...++.+.+...+....-+.|+.++.-..-|+++...|++.+|+..++...+..|.++
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 3444555667888888888888888888888888888888888888888888888776666544
|
|
| >KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription] | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.16 Score=54.70 Aligned_cols=145 Identities=14% Similarity=0.112 Sum_probs=110.7
Q ss_pred cEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCC-CCCHHHHHHHHHH
Q 002100 257 DMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLD-SFDPRLVLELLSF 335 (967)
Q Consensus 257 Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~-~~~~~~~~~ll~~ 335 (967)
|+++......+++|+.+|...|+.|..+....-.-+....+.+.. ++...+..+..++|.+ ++ .-.......++.+
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~ 104 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILG--VPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLAL 104 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeec--ccccccchhhhhhccc-hhhhHHHHHHHHHHhh
Confidence 344455677899999999999999988876552333334566644 7889999999999988 52 1223346677788
Q ss_pred hchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhhcCCchhHhhhhcc
Q 002100 336 ANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNPNVMRIFCS 404 (967)
Q Consensus 336 A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~l~~~~~~~ll~s 404 (967)
...|.++.++..|+..+...+-+..|++..+..+..+..+.|..++...|...+.....++.....-++
T Consensus 105 ~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~~c~ 173 (319)
T KOG1778|consen 105 SHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAYTCP 173 (319)
T ss_pred hhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceeeecC
Confidence 789999999999999998854438899999999999999999999999999888876665444443333
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.85 E-value=11 Score=37.80 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=60.5
Q ss_pred HHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhcc-CCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-----
Q 002100 841 MTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQL-DPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD----- 914 (967)
Q Consensus 841 ~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l-~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~----- 914 (967)
+..-.+..++-..+|+.-...|+ ++|..-|-++-.. .=+++...+.+|..|. ..+.++|+..+.+++++.+.
T Consensus 100 L~~~tk~S~dP~llYy~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n 177 (203)
T PF11207_consen 100 LQEETKNSQDPYLLYYHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFN 177 (203)
T ss_pred HHHHHccCCCccHHHHHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCC
Confidence 33333333333334444444444 4455554443221 1245677777886555 68899999999999987544
Q ss_pred hHHHHHHHHHHHHcCChHHHH
Q 002100 915 LQLLHLRAAFHDSMGDHLHTQ 935 (967)
Q Consensus 915 ~~~~~~~a~~~~~~g~~~~A~ 935 (967)
++++..++.++.++|+++.|-
T Consensus 178 ~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 178 PEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHHHhcchhhhh
Confidence 568999999999999999885
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=89.79 E-value=2.3 Score=47.12 Aligned_cols=89 Identities=12% Similarity=0.041 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
|...|-..+..++...|.++.....++.+....|+|+.|...+..+-++-. ...+...+-+-...++++++|...-.-.
T Consensus 304 d~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~ 383 (831)
T PRK15180 304 DIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMM 383 (831)
T ss_pred CHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 445566666666666666666666666666666666666666655444333 2333444444555666666666655555
Q ss_pred HHhCCCchHH
Q 002100 613 LTLDPSYMMF 622 (967)
Q Consensus 613 l~l~p~~~~~ 622 (967)
+.-.-+++..
T Consensus 384 l~~eie~~ei 393 (831)
T PRK15180 384 LSNEIEDEEV 393 (831)
T ss_pred hccccCChhh
Confidence 5444333333
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.35 E-value=0.56 Score=47.12 Aligned_cols=58 Identities=17% Similarity=0.055 Sum_probs=47.2
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch
Q 002100 688 LLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF 745 (967)
Q Consensus 688 ~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 745 (967)
....++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|.+.|++.++++|..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4456778888888888888888888888888888888888888888888888888854
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.33 E-value=47 Score=38.27 Aligned_cols=249 Identities=10% Similarity=-0.032 Sum_probs=139.7
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE----HEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
.+.+.......|.++...+..+..+...|+.+.|+..++..+. +.. +-.++.+|+++..+.+|..|-..+....
T Consensus 253 ~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~ 330 (546)
T KOG3783|consen 253 EKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR 330 (546)
T ss_pred HHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445566667899888888889999999998888888888877 332 2345678999999999999988888877
Q ss_pred hcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHh--------cccHHHHHHHHHH
Q 002100 740 SIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVD--------CEKLDLAADCYMN 811 (967)
Q Consensus 740 ~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~--------~g~~~~A~~~~~~ 811 (967)
+.+.-..++| -+..|.++++ .|+-++|..+++.
T Consensus 331 desdWS~a~Y---------------------------------------~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~ 371 (546)
T KOG3783|consen 331 DESDWSHAFY---------------------------------------TYFAGCCLLQNWEVNQGAGGNEEKAQLYFKV 371 (546)
T ss_pred hhhhhhHHHH---------------------------------------HHHHHHHHhccHHHHHhcccchhHHHHHHHH
Confidence 6554222111 1111222211 2233333333332
Q ss_pred Hhc-------cCcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc-CChHH---HHHHHHHhhccCC
Q 002100 812 ALN-------IKHTR-AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY-CDRDM---AKSDLSMATQLDP 879 (967)
Q Consensus 812 Al~-------~~~~~-a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~---A~~~l~~al~l~p 879 (967)
..+ ..|.+ ....-+.-+...+. -.+...+.. |-..-+|...|-- ...++ ....++.----|+
T Consensus 372 ~~~l~~~a~K~~P~E~f~~RKverf~~~~~-~~~~~~la~-----P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~ 445 (546)
T KOG3783|consen 372 GEELLANAGKNLPLEKFIVRKVERFVKRGP-LNASILLAS-----PYYELAYFWNGFSRMSKNELEKMRAELENPKIDDS 445 (546)
T ss_pred HHHHHHhccccCchhHHHHHHHHHHhcccc-ccccccccc-----hHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCc
Confidence 221 12222 11112222222221 000000000 2222233333321 11122 1222221111133
Q ss_pred CCch-HHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCC----hHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCch
Q 002100 880 MRTY-PYRYRAAVLMDDHKEAEAIAELSRAIAF----KPD----LQLLHLRAAFHDSMGD-HLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 880 ~~~~-~~~~la~~~~~~g~~~eAi~~~~kal~~----~p~----~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~P~~~ 949 (967)
++.- -+..+|.++...|+...|..+|..+.+. ..+ |-++|.+|.+++.+|. ..++..++.+|-+...++.
T Consensus 446 Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 446 DDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 3332 3456789999999999999999888742 222 3489999999999999 9999999999988876654
Q ss_pred hHHHHHHHHH
Q 002100 950 DTLELYDKAT 959 (967)
Q Consensus 950 ~~l~l~~r~~ 959 (967)
---.+.-|++
T Consensus 526 lenRLh~rIq 535 (546)
T KOG3783|consen 526 LENRLHMRIQ 535 (546)
T ss_pred hhhHHHHHHH
Confidence 3333444443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.02 E-value=0.55 Score=33.62 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=19.9
Q ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 787 QALNNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 787 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
.+++++|.+|..+|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777777777777777777777765
|
|
| >KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.57 E-value=38 Score=36.20 Aligned_cols=257 Identities=18% Similarity=0.102 Sum_probs=147.3
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCch
Q 002100 687 LLLRLNSQKAAMRSLRLARNYSTSEHEKLV-YEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESS 765 (967)
Q Consensus 687 ~~~~~g~~~~A~~~l~~al~~~p~~~~a~~-~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~ 765 (967)
++-..+..+-++..++..- .+.+-+.++. ....+.....+.++..+-.-++++ +|+-. ... .+.
T Consensus 44 ll~~TNMiDy~md~~k~l~-~sed~p~a~~ekr~~Vla~lkeLe~ev~piv~~le-~Pd~~-------~~~------~~~ 108 (432)
T KOG2758|consen 44 LLNKTNMIDYVMDTYKNLH-TSEDMPNALVEKRTEVLAELKELEEEVAPIVKVLE-NPDLI-------AAL------RSD 108 (432)
T ss_pred HHcccchHHHHHHHHhccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHH-------HHH------Hhh
Confidence 3344455555565554432 2222233332 234455555555555555544442 23111 000 011
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHH--Hhc--cCcHH--HHHHHHHHHHHhCCHHHHHH
Q 002100 766 AYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMN--ALN--IKHTR--AHQGLARVYHLKNQRKAAYD 839 (967)
Q Consensus 766 ~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~--Al~--~~~~~--a~~~la~~~~~~g~~~~A~~ 839 (967)
..-...++.+.+...-.+....+++..+...+.+|+|..|-.++-. ++- ++... ++.+--..-....+|+.|++
T Consensus 109 k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~e 188 (432)
T KOG2758|consen 109 KDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALE 188 (432)
T ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHH
Confidence 1224566667777777778888999999999999999999886533 333 22222 45554445667789999999
Q ss_pred HHHHHHHHccC-----CHHHHHHHHcc------------CChHHHHHHH------HHhhccCCCCchHHHHHHHHHHhC-
Q 002100 840 EMTKLIEKARN-----NASAYEKRSEY------------CDRDMAKSDL------SMATQLDPMRTYPYRYRAAVLMDD- 895 (967)
Q Consensus 840 ~~~~al~~~p~-----~~~~~~~~~~~------------~~~~~A~~~l------~~al~l~p~~~~~~~~la~~~~~~- 895 (967)
.+.+.-+.-.+ ......++..+ +-.+.-++.| -.|++ ...|..+++++.+..-.
T Consensus 189 dL~rLre~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQ--t~cPhllRYLatAvvtnk 266 (432)
T KOG2758|consen 189 DLTRLREYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQ--TSCPHLLRYLATAVVTNK 266 (432)
T ss_pred HHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHH--hhCHHHHHHHHHHhhcch
Confidence 99877664332 22333333311 2222322222 12222 23467888888766655
Q ss_pred CCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhh
Q 002100 896 HKEAEAIAELSRAIAFKPD---LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATER 961 (967)
Q Consensus 896 g~~~eAi~~~~kal~~~p~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~ 961 (967)
.+...+++.+-|+|+...- +.+-.-+ .+++-.=|+++|...++++-+.--||.-+..++....+.
T Consensus 267 ~~rr~~lkdlvkVIqqE~ysYkDPiteFl-~clyvn~DFdgAq~kl~eCeeVl~nDfFLva~l~~F~E~ 334 (432)
T KOG2758|consen 267 RRRRNRLKDLVKVIQQESYSYKDPITEFL-ECLYVNYDFDGAQKKLRECEEVLVNDFFLVALLDEFLEN 334 (432)
T ss_pred HhhHHHHHHHHHHHHHhccccCCcHHHHH-HHHhhccchHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 7888999999999976432 1122222 334445689999998888877777776666655554443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.15 E-value=8.4 Score=38.27 Aligned_cols=90 Identities=11% Similarity=0.024 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC----ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCchHHhhhhh
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFKV----SPDCLELRAWISIALEDYDGALRDVRALLTL--DPSYMMFYGQLH 627 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~ 627 (967)
.++..+|..|.+.|++++|++.|.++.+... ..+.++.+..+.+..+++..+...+.++-.+ .+.+.....++.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5788999999999999999999999888665 3668888899999999999999999888766 233333333322
Q ss_pred hhhhHhhhHHHhhchhhH
Q 002100 628 GDNLVETLQPLVQQWSQA 645 (967)
Q Consensus 628 ~~~~~~~l~~~~~~~~~A 645 (967)
...|+.+...++|..|
T Consensus 117 --~~~gL~~l~~r~f~~A 132 (177)
T PF10602_consen 117 --VYEGLANLAQRDFKEA 132 (177)
T ss_pred --HHHHHHHHHhchHHHH
Confidence 3456666777788877
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=88.13 E-value=2.4 Score=47.00 Aligned_cols=157 Identities=14% Similarity=0.101 Sum_probs=109.8
Q ss_pred HHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhc
Q 002100 563 LVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQ 641 (967)
Q Consensus 563 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~ 641 (967)
....|+...|-+.+..++...| .|....+++.++..+|+|+.|..++..+-..-..-..+. ..+-.-...+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~------~~~~r~~~~l~r 372 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTL------RCRLRSLHGLAR 372 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHH------HHHHHhhhchhh
Confidence 4567899999999999999999 899999999999999999999888765544322222222 333455667788
Q ss_pred hhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHH--H
Q 002100 642 WSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYE--G 719 (967)
Q Consensus 642 ~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~l--g 719 (967)
|+.| +....-++...-..+.+..-.+.....++-+++|....++.+.++|.....+.+. .
T Consensus 373 ~~~a------------------~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 373 WREA------------------LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHH------------------HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 8888 7777777777767777777667777788899999999999999988765444432 2
Q ss_pred HHHHHcCC-hHHHHHHHHHHHhccc
Q 002100 720 WILYDTGH-REEALAKAEESISIQR 743 (967)
Q Consensus 720 ~~~~~~g~-~~eA~~~~~~al~~~p 743 (967)
.-|+..|+ +.+|...--+.-.++.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (831)
T PRK15180 435 TQYFNDGNAFSEAFHAGIQSQRLND 459 (831)
T ss_pred ceeccCcchHHHHHHhhhhhhhhhH
Confidence 23444443 4455444333333333
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.04 E-value=2.3 Score=44.48 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=54.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhh
Q 002100 887 YRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATER 961 (967)
Q Consensus 887 ~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~ 961 (967)
++-.+++..++++.|....++.+.++|+. .-+.-+|.+|.++|-+.-|+.+++..++..|+++...-+..++.+-
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~l 261 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLEL 261 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 44456777778888888888888887774 3455678888888888888888888888888877766655555443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.96 E-value=25 Score=40.93 Aligned_cols=180 Identities=13% Similarity=0.050 Sum_probs=78.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcccchHHHH-HHHHHhhhcCCCCCchHHHHHHHHHHhcCC--CCCCchHHHHHHh
Q 002100 716 VYEGWILYDTGHREEALAKAEESISIQRSFEAFF-LKAYALADSSLNPESSAYVIQLLEEALRCP--SDGLRKGQALNNL 792 (967)
Q Consensus 716 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~-~~~~~la~~~~~~~~~~~a~~~le~~~~~~--~~~~~~~~a~~~l 792 (967)
..+|.++..+|++.||.+.|.+.=.-+...+.|. +..+.++...+..+..++-..++.+-..-. ...|. ..
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk------aA 709 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK------AA 709 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH------HH
Confidence 4567777788889999888875322222111111 122222222222222222112211111100 00111 12
Q ss_pred HHHHHhcccHHHHHHHHH------HHhc----cCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc
Q 002100 793 GSVYVDCEKLDLAADCYM------NALN----IKHT--RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE 860 (967)
Q Consensus 793 g~~~~~~g~~~~A~~~~~------~Al~----~~~~--~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 860 (967)
+..+...|+.++|+...- -+++ ++.. +.+..++.-+..+..+.-|-+.|.+.-.. ...-...-+
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----ksiVqlHve 785 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----KSLVQLHVE 785 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH----HHHhhheee
Confidence 455666777777765431 1222 1211 24444555455555555555555433211 111111112
Q ss_pred cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002100 861 YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRA 908 (967)
Q Consensus 861 ~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~ka 908 (967)
.+++++|...-++--+.-|+ .|+-.|.-+.+..+++||-+.|-+|
T Consensus 786 ~~~W~eAFalAe~hPe~~~d---Vy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 786 TQRWDEAFALAEKHPEFKDD---VYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHhHhhhhhCcccccc---ccchHHHHhhhhhhHHHHHHHHHHh
Confidence 36777776665554444333 3444455555555555555555444
|
|
| >KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription] | Back alignment and domain information |
|---|
Probab=87.64 E-value=0.35 Score=48.03 Aligned_cols=18 Identities=17% Similarity=0.010 Sum_probs=10.8
Q ss_pred CCcccE-EEEEcCeEEEeh
Q 002100 253 DEDWDM-SFCIGNDEIRCV 270 (967)
Q Consensus 253 ~~~~Dv-~~~v~~~~~~~h 270 (967)
.+.+|- .+.|+++.|.-|
T Consensus 175 qelpeg~~~tvDnk~F~Fd 193 (263)
T KOG3074|consen 175 QELPEGTSITVDNKRFLFD 193 (263)
T ss_pred CCCCCCCeEEEecceeEEe
Confidence 344443 366788877755
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.57 E-value=13 Score=41.04 Aligned_cols=169 Identities=14% Similarity=0.201 Sum_probs=107.3
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHh------------cCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc--
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVE------------ENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE-- 600 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g-- 600 (967)
+++++.=.+.++.+|+....|..+-.++.. +.-.++-+.....++..+| +..+++.+.++..+.+
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 445555555556666655555444333322 1245666777888888999 7888999999988765
Q ss_pred CHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHH
Q 002100 601 DYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLL 680 (967)
Q Consensus 601 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~ 680 (967)
++..-++..+++++.+|.+..++. .+-.+......- ..+..+-+....+++..++.+-.+
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~------YRRfV~~~~~~~--------------~~~~~~El~ftt~~I~~nfSNYsa 185 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWH------YRRFVVEQAERS--------------RNLEKEELEFTTKLINDNFSNYSA 185 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchH------HHHHHHHHHhcc--------------cccchhHHHHHHHHHhccchhhhH
Confidence 367788889999999998877772 222222221111 001122378888888888888888
Q ss_pred HHHHHHHHHH------hcC------HHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 002100 681 RFRQSLLLLR------LNS------QKAAMRSLRLARNYSTSEHEKLVYEGWILYD 724 (967)
Q Consensus 681 ~~~~g~~~~~------~g~------~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~ 724 (967)
|..+..++.. .|. ...-+.....|+-.+|++..+|++.-+.+-.
T Consensus 186 WhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 186 WHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred HHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 8887777653 221 1223345556777899999998886665544
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.48 E-value=40 Score=38.39 Aligned_cols=154 Identities=13% Similarity=0.069 Sum_probs=90.9
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHH--HHHHHHHhcCChHHHHHHHHHHHhcc
Q 002100 442 LLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLV--GVARTKFKRGHKYSAYKLMNSLISDY 519 (967)
Q Consensus 442 ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~--~la~~~~~~g~~~~A~~~l~~~i~~~ 519 (967)
+.+++....-...+.-++++.++.+|.+. .-++=...+++.++.+-..+.. .|+..| .+++...+...|.+++..+
T Consensus 84 ~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y-Ekik~sk~a~~f~Ka~yrf 161 (711)
T COG1747 84 IVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY-EKIKKSKAAEFFGKALYRF 161 (711)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH-HHhchhhHHHHHHHHHHHh
Confidence 34444333333445567899999999988 6677788888888885544433 455544 4588999999999998866
Q ss_pred CcchhHHHHHhhcC-----ChHHHHHHHHHhHhhCCCCc----h-hHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhH
Q 002100 520 TPVGWMYQERSLYC-----SGKEKMMDLNTATELDPTLS----Y-PYKYRAILLVEENKLAAAITEINRIIGFKV-SPDC 588 (967)
Q Consensus 520 ~~~g~~~~~~~~y~-----~~~~A~~~~~~al~l~P~~~----~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~ 588 (967)
.+...+..-+..|. -+++--..+....++..++. . ++...-.-|....+|++|++.+..+++.+. +..+
T Consensus 162 I~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 162 IPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred cchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhH
Confidence 65333222222220 01111122222222222222 1 222233455667889999999999999888 6666
Q ss_pred HHHHHHHHH
Q 002100 589 LELRAWISI 597 (967)
Q Consensus 589 ~~~la~~~~ 597 (967)
...+-..+.
T Consensus 242 r~~~i~~lR 250 (711)
T COG1747 242 RKEIIENLR 250 (711)
T ss_pred HHHHHHHHH
Confidence 655544443
|
|
| >PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice | Back alignment and domain information |
|---|
Probab=87.43 E-value=2.7 Score=48.99 Aligned_cols=13 Identities=8% Similarity=0.179 Sum_probs=7.4
Q ss_pred hHHHHHhhhhccC
Q 002100 8 NFFTTMRSLKIID 20 (967)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (967)
||++-|...+-..
T Consensus 49 sILaIM~AVGAsr 61 (828)
T PF04094_consen 49 SILAIMSAVGASR 61 (828)
T ss_pred HHHHHHHHhcccc
Confidence 5666666655443
|
They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.34 E-value=34 Score=39.55 Aligned_cols=139 Identities=18% Similarity=0.104 Sum_probs=79.8
Q ss_pred CC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------------------CCCchHHhhhhhhhhhHhhhHHHhh
Q 002100 583 KV-SPDCLELRAWISIALEDYDGALRDVRALLTL---------------------DPSYMMFYGQLHGDNLVETLQPLVQ 640 (967)
Q Consensus 583 ~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l---------------------~p~~~~~~~~~~~~~~~~~l~~~~~ 640 (967)
.| ..+.+..++.+...+||.+-|...++++|=. .|.|..+|. .++.++.
T Consensus 280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL---------~l~r~m~ 350 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYL---------ALFRYMQ 350 (665)
T ss_pred CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHH---------HHHHHHH
Confidence 45 6667777777777777777776666666521 233343331 1122222
Q ss_pred chhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC-ChHHHHHHHH-HHHHhcCHHHHHHHHHHHH-----hcCCchhH
Q 002100 641 QWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG-KSLLRFRQSL-LLLRLNSQKAAMRSLRLAR-----NYSTSEHE 713 (967)
Q Consensus 641 ~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~-~~~~~~~~g~-~~~~~g~~~~A~~~l~~al-----~~~p~~~~ 713 (967)
...+--||. .|+++..-++.++|. +|.....+-. ..++.++|.=-++.++..- ..-|+..
T Consensus 351 ~l~~RGC~r------------TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~- 417 (665)
T KOG2422|consen 351 SLAQRGCWR------------TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG- 417 (665)
T ss_pred HHHhcCChH------------HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-
Confidence 222222231 237888888899998 7765444433 3456677777777666652 2334422
Q ss_pred HHHHHHHHHHHcCC---hHHHHHHHHHHHhccc
Q 002100 714 KLVYEGWILYDTGH---REEALAKAEESISIQR 743 (967)
Q Consensus 714 a~~~lg~~~~~~g~---~~eA~~~~~~al~~~p 743 (967)
.-..+|..|..... .+.|+..+.+|+...|
T Consensus 418 yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 418 YSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 12234455544443 5678889999998888
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.82 E-value=4.7 Score=50.75 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=48.7
Q ss_pred CCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH----------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002100 779 PSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT----------RAHQGLARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 779 ~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~----------~a~~~la~~~~~~g~~~~A~~~~~~al~ 846 (967)
..++|.-+....+++.++...++++.|+.+.+.|++.... ..+..+++++...+++..|....+....
T Consensus 1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 3456777778899999999999999999999999883221 2455566666666666666655554443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.60 E-value=3.8 Score=38.71 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=58.7
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYD 603 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~ 603 (967)
+.+++...+...--+-|+.+..-..-|.+++..|+|.+|+..++.+.+-.+ .+.+-.+++.|+..+||.+
T Consensus 25 d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 25 DPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred CHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 446666666666677899999999999999999999999999999988888 6888888899999888864
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.48 E-value=1.3 Score=31.34 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
+++..+|.+-...++|++|+.+|+++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778888888888888888888888876
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.32 E-value=14 Score=42.79 Aligned_cols=37 Identities=16% Similarity=-0.117 Sum_probs=20.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 002100 685 SLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWI 721 (967)
Q Consensus 685 g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~ 721 (967)
+.++..+++..++...++++....|.++.....+...
T Consensus 149 ~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 149 GRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 5555555666666666666666666655544444333
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.25 E-value=51 Score=35.28 Aligned_cols=132 Identities=11% Similarity=-0.022 Sum_probs=67.8
Q ss_pred HHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHh
Q 002100 466 VMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTA 545 (967)
Q Consensus 466 ~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~a 545 (967)
..++..+..+-++.-..|+++++..+.+++-.+....--..+|++++++++......-.--+....++ .. .+..
T Consensus 193 ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~--~~----~da~ 266 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEINNECATAYVLLAEEEATTIVDAERLFKQALKAGETIYRQSQQCQHQS--PQ----HEAQ 266 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhc--cc----hhhh
Confidence 34455566666667777777777544433222212222233566666666552110000000000000 00 0111
Q ss_pred HhhCCCCc--hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC---ChhHHHHHHHHHHHhcCHHH
Q 002100 546 TELDPTLS--YPYKYRAILLVEENKLAAAITEINRIIGFKV---SPDCLELRAWISIALEDYDG 604 (967)
Q Consensus 546 l~l~P~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~ 604 (967)
.+.| .+. +....+|.+..++|+..+|++.+....+..| -...+.++-...+...-|..
T Consensus 267 ~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 267 LRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred hhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 233 3445678899999999999999999988888 13455555555555554433
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.19 E-value=1 Score=31.81 Aligned_cols=29 Identities=28% Similarity=0.451 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 002100 458 LAFHQLGVVMLEREEYKDAQNWFKAAVEA 486 (967)
Q Consensus 458 ~a~~~lG~~~~~~g~y~~A~~~f~~al~~ 486 (967)
.++..||.+-+..++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46788999999999999999999999987
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.05 E-value=3.1 Score=43.57 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=61.2
Q ss_pred hhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 002100 630 NLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST 709 (967)
Q Consensus 630 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p 709 (967)
.++-..+...++|+.| +....+.+..+|.++.-+.-+|.+|.++|++..|+..++..+++.|
T Consensus 185 ~~lk~~~~~e~~~~~a------------------l~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 185 RNLKAALLRELQWELA------------------LRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHHHHHHhhchHHH------------------HHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 3445556677778787 8899999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHH
Q 002100 710 SEHEKLVYEGWI 721 (967)
Q Consensus 710 ~~~~a~~~lg~~ 721 (967)
+++.+-.....+
T Consensus 247 ~~~~a~~ir~~l 258 (269)
T COG2912 247 DDPIAEMIRAQL 258 (269)
T ss_pred CchHHHHHHHHH
Confidence 988765544433
|
|
| >PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] | Back alignment and domain information |
|---|
Probab=85.86 E-value=1.5 Score=36.93 Aligned_cols=50 Identities=22% Similarity=0.291 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCC--ChhhHHHHHHHHHHh
Q 002100 323 SFDPRLVLELLSFANRFCCEELKSACDSYLASMVS--DIEDAVMLIEYGLEE 372 (967)
Q Consensus 323 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~--~~~n~~~~~~~A~~~ 372 (967)
.++.+.+.+|+.+|++++|+.|.+.|...++..+. +++.+..++.+...+
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~ 61 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDL 61 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TS
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCC
Confidence 35778999999999999999999999999998886 245555555444433
|
It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A .... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.71 E-value=79 Score=36.95 Aligned_cols=177 Identities=14% Similarity=0.006 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHH
Q 002100 711 EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALN 790 (967)
Q Consensus 711 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~ 790 (967)
+...|....+.-...|+++...-.|++++---..+..++.+-....... +..+-+-..+..+.+... +.......
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~---~~~~~~~~~~~~~~~i~~--k~~~~i~L 370 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESS---GDVSLANNVLARACKIHV--KKTPIIHL 370 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHc---CchhHHHHHHHhhhhhcC--CCCcHHHH
Confidence 3445556666666777777777777776633332222221111111111 111111111111111111 11112333
Q ss_pred HhHHHHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHH---HHHHHHHHccCC---HHHHHHHHcc-
Q 002100 791 NLGSVYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYD---EMTKLIEKARNN---ASAYEKRSEY- 861 (967)
Q Consensus 791 ~lg~~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~---~~~~al~~~p~~---~~~~~~~~~~- 861 (967)
.-+.+-...|+++.|...|++..+ ++-..+-..-+.....+|+.+.+.. .+....+.-.++ ...+...+.+
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 334444555666666666666655 2222233444445555555555552 222111111111 1111111211
Q ss_pred ----CChHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 002100 862 ----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVL 892 (967)
Q Consensus 862 ----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~ 892 (967)
++.+.|...+.++++..|.+...+..+-...
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 5556666666666666666555555444433
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.20 E-value=6.9 Score=49.35 Aligned_cols=164 Identities=18% Similarity=0.172 Sum_probs=108.4
Q ss_pred hHHHHHHHHHhcCcHHHHHH------HHHHHhc-cCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCC
Q 002100 555 PYKYRAILLVEENKLAAAIT------EINRIIG-FKV-SPDCLELRAWISIALEDYDGALRDVRALLTL--------DPS 618 (967)
Q Consensus 555 ~~~~la~~~~~~g~~~~A~~------~~~~al~-~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--------~p~ 618 (967)
-....+......+.+.+|.+ .++.... +.| ...+|..++.++..++++++|+..-.++.-+ .|+
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 34566777788888988888 4443332 344 6789999999999999999999988777654 223
Q ss_pred chHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHh--------cCCCChHHHHHHHHHHHH
Q 002100 619 YMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLA--------NDPGKSLLRFRQSLLLLR 690 (967)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~--------~~p~~~~~~~~~g~~~~~ 690 (967)
....+ -++++.....++-..| +..+.++.. ..|.-.....+++.++..
T Consensus 1014 t~~~y------~nlal~~f~~~~~~~a------------------l~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~ 1069 (1236)
T KOG1839|consen 1014 TKLAY------GNLALYEFAVKNLSGA------------------LKSLNRALKLKLLSSGEDHPPTALSFINLELLLLG 1069 (1236)
T ss_pred HHHHh------hHHHHHHHhccCccch------------------hhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhh
Confidence 33333 3334444444433333 555555443 246666677889999999
Q ss_pred hcCHHHHHHHHHHHHhcCCc--------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 002100 691 LNSQKAAMRSLRLARNYSTS--------EHEKLVYEGWILYDTGHREEALAKAEESISIQ 742 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~--------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 742 (967)
.++++.|++.++.|...+.. ....+..++.+....+++..|+...+....+.
T Consensus 1070 v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy 1129 (1236)
T KOG1839|consen 1070 VEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIY 1129 (1236)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHH
Confidence 99999999999999885433 22334455666666666666666666555433
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=84.43 E-value=3.7 Score=35.97 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=46.7
Q ss_pred HHHHhcCcHHHHHHHHHHHhccCC-----C-----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 561 ILLVEENKLAAAITEINRIIGFKV-----S-----PDCLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~al~~~p-----~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
......++|.+|++.+.+.+.... . ..++..+|.++...|++++|+..+++++.+...
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345678899999888888876644 1 346788999999999999999999999987443
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=84.33 E-value=3.7 Score=35.91 Aligned_cols=57 Identities=28% Similarity=0.269 Sum_probs=45.7
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCc---------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 687 LLLRLNSQKAAMRSLRLARNYSTS---------EHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 687 ~~~~~g~~~~A~~~l~~al~~~p~---------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
..++.++|.+|++.+.+....... ...++.++|.++...|++++|+..+++++++..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 346789999998888777654322 245678899999999999999999999997766
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.95 E-value=86 Score=35.88 Aligned_cols=55 Identities=20% Similarity=0.117 Sum_probs=48.0
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCc-HHHHHHHHHHHhccCC-ChhHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENK-LAAAITEINRIIGFKV-SPDCLE 590 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p-~~~~~~ 590 (967)
.+--..|.+++..+|+++..|..-|.-.+..+. .+.|...+.+++..+| ++..+.
T Consensus 122 ~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 122 GEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred hHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 666778999999999999999999998888877 9999999999999999 666544
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=82.07 E-value=68 Score=36.23 Aligned_cols=71 Identities=23% Similarity=0.389 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCc
Q 002100 489 IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENK 568 (967)
Q Consensus 489 ~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 568 (967)
-++..+|.|++...|++..|++.+..+--... + +|. +.-+-....+++.|.+|+.+++
T Consensus 122 YFSligLlRvh~LLGDY~~Alk~l~~idl~~~--~-l~~-------------------~V~~~~is~~YyvGFaylMlrR 179 (404)
T PF10255_consen 122 YFSLIGLLRVHCLLGDYYQALKVLENIDLNKK--G-LYT-------------------KVPACHISTYYYVGFAYLMLRR 179 (404)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHhhccCcccc--h-hhc-------------------cCcchheehHHHHHHHHHHHHH
Confidence 46788999999999999999998876522110 0 111 1223466789999999999999
Q ss_pred HHHHHHHHHHHhc
Q 002100 569 LAAAITEINRIIG 581 (967)
Q Consensus 569 ~~~A~~~~~~al~ 581 (967)
|.+|++.|..++-
T Consensus 180 Y~DAir~f~~iL~ 192 (404)
T PF10255_consen 180 YADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999873
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=81.92 E-value=7.5 Score=32.37 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=44.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 887 YRAAVLMDDHKEAEAIAELSRAIAFKPDLQ----LLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 887 ~la~~~~~~g~~~eAi~~~~kal~~~p~~~----~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
..|.-++..++.++|+..++++++..++++ ++-.+..+|...|+|.+++++--+=+++
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556678899999999999999888743 6666788899999999988776554443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.83 E-value=1.2 Score=47.38 Aligned_cols=10 Identities=20% Similarity=0.052 Sum_probs=3.9
Q ss_pred HHHHHHHHHh
Q 002100 306 VEAMRAAEEF 315 (967)
Q Consensus 306 ~~~~~~~l~~ 315 (967)
+.+.+..+.+
T Consensus 335 ~~aver~v~h 344 (494)
T KOG1456|consen 335 AYAVERAVTH 344 (494)
T ss_pred HHHHHHHHHH
Confidence 3333444433
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.81 E-value=13 Score=43.27 Aligned_cols=103 Identities=15% Similarity=-0.002 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHH
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAV 666 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~ 666 (967)
..+.+-|.-.++..+|..+++.|...+..-|.+............+..+|..++|.+.| +++
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A------------------~E~ 416 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNA------------------VEV 416 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHH------------------HHH
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 002100 667 VHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY 707 (967)
Q Consensus 667 ~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~ 707 (967)
+..+-+.+|.++.-.+.........+.-++|+.+.......
T Consensus 417 ~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 417 YQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.73 E-value=58 Score=37.57 Aligned_cols=129 Identities=17% Similarity=0.022 Sum_probs=72.2
Q ss_pred HHHhcCcHHHHHHHHHHHhccCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHh
Q 002100 562 LLVEENKLAAAITEINRIIGFKV--SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLV 639 (967)
Q Consensus 562 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~ 639 (967)
.....+++++++...... .+-| ..+-....+..+.++|-++.|+...+ +|+ .. =.+....
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~-----D~~---~r---------FeLAl~l 331 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT-----DPD---HR---------FELALQL 331 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------HH---HH---------HHHHHHC
T ss_pred HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC-----ChH---HH---------hHHHHhc
Confidence 344567888877766422 2223 34556667777888888888876432 232 22 1223444
Q ss_pred hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHH
Q 002100 640 QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEG 719 (967)
Q Consensus 640 ~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg 719 (967)
|+.+.| ++ +....+++..|.++|...+.+|+++-|..+|+++- -+..+.
T Consensus 332 g~L~~A------------------~~-----~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~ 380 (443)
T PF04053_consen 332 GNLDIA------------------LE-----IAKELDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLL 380 (443)
T ss_dssp T-HHHH------------------HH-----HCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHH
T ss_pred CCHHHH------------------HH-----HHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccH
Confidence 555555 11 11223456789999999999999999999988752 344566
Q ss_pred HHHHHcCChHHHHHHHHHHH
Q 002100 720 WILYDTGHREEALAKAEESI 739 (967)
Q Consensus 720 ~~~~~~g~~~eA~~~~~~al 739 (967)
.+|...|+.+.=.+..+.+.
T Consensus 381 lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 381 LLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 77778888765555555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.04 E-value=2.1 Score=44.43 Aligned_cols=86 Identities=12% Similarity=0.136 Sum_probs=60.1
Q ss_pred ccEEEEEcCeEEEehhHHHhccCH-HHHHhhcCCCCC---CccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHHHH
Q 002100 256 WDMSFCIGNDEIRCVRYKIASLSR-PFRTMLYGGFIE---SRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVLE 331 (967)
Q Consensus 256 ~Dv~~~v~~~~~~~hr~vLa~~S~-~F~~~~~~~~~e---~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ 331 (967)
--+|..|++..|-+.+.+|-+.-. -.-.||.+++.- +...+.++.+ ||+..+|+++|+|--||.+--.+.-.|.+
T Consensus 96 ~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAd-Gi~s~vFRAILdYYksG~iRCP~~vSvpE 174 (438)
T KOG3840|consen 96 DKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVAD-GMTSSCFRAILDYYQSGTMRCPSSVSVSE 174 (438)
T ss_pred cceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhc-chhHHHHHHHHHHHhcCceeCCCCCchHH
Confidence 357788899999999888855422 246778776542 3345788875 89999999999999999883222334566
Q ss_pred HHHHhchhChH
Q 002100 332 LLSFANRFCCE 342 (967)
Q Consensus 332 ll~~A~~~~~~ 342 (967)
|-.+.|+++|+
T Consensus 175 LrEACDYLlip 185 (438)
T KOG3840|consen 175 LREACDYLLVP 185 (438)
T ss_pred HHhhcceEEee
Confidence 66666666554
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.64 E-value=6.2 Score=39.67 Aligned_cols=68 Identities=24% Similarity=0.220 Sum_probs=37.4
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 002100 891 VLMDDHKEAEAIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKA 958 (967)
Q Consensus 891 ~~~~~g~~~eAi~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~ 958 (967)
.+.+.+...+|+...+.-++-+|... ..+.+-.++.-.|+|++|+..++-+-++.|++....++|..+
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~l 78 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHL 78 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 34445555566665555555555532 344445555555666666666666666666655555555443
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.46 E-value=47 Score=36.95 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=22.1
Q ss_pred HHHHHHhhccCCCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCC
Q 002100 868 KSDLSMATQLDPMRTYPYRYRAAVLMDDH--KEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 868 ~~~l~~al~l~p~~~~~~~~la~~~~~~g--~~~eAi~~~~kal~~~p~ 914 (967)
+.....+++.+|+...+|+.+.+++.+.+ ++..=+...+++++.+|.
T Consensus 95 L~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~R 143 (421)
T KOG0529|consen 95 LKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPR 143 (421)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcc
Confidence 33444444455555555555555554442 234444445555555544
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=80.40 E-value=4.9 Score=28.06 Aligned_cols=32 Identities=25% Similarity=0.135 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHH--HHHHHHhCCC
Q 002100 587 DCLELRAWISIALEDYDGALRD--VRALLTLDPS 618 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~--~~~al~l~p~ 618 (967)
+.++.+|..+..+|++++|+.. |+-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4566667777777777777777 4466666554
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.37 E-value=43 Score=38.60 Aligned_cols=101 Identities=11% Similarity=-0.028 Sum_probs=65.1
Q ss_pred HHhcccHHHHHHHHHH--HhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH-ccCChHHHHHHHH
Q 002100 796 YVDCEKLDLAADCYMN--ALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS-EYCDRDMAKSDLS 872 (967)
Q Consensus 796 ~~~~g~~~~A~~~~~~--Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-~~~~~~~A~~~l~ 872 (967)
....++++++....+. .+..=|..-...++..+.++|.++.|+..- .++..-+.++ ..|+.+.|.+..+
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLAl~lg~L~~A~~~a~ 342 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELALQLGNLDIALEIAK 342 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHHHHCT-HHHHHHHCC
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHHHhcCCHHHHHHHHH
Confidence 3567888887777752 222223456778888999999999887763 3445556666 3578887766532
Q ss_pred HhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002100 873 MATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAI 909 (967)
Q Consensus 873 ~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal 909 (967)
..+++..|..+|.+.+.+|+++-|.++|+++-
T Consensus 343 -----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 343 -----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp -----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred -----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 23467799999999999999999999998773
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.14 E-value=26 Score=38.71 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHh----Cc-hhHHHHHHHHHHhcCChHH
Q 002100 457 QLAFHQLGVVMLEREEYKDAQNWFKAAVEA----GH-IYSLVGVARTKFKRGHKYS 507 (967)
Q Consensus 457 a~a~~~lG~~~~~~g~y~~A~~~f~~al~~----~~-~~a~~~la~~~~~~g~~~~ 507 (967)
-.++-.+|..|+.-|+++.|+++|-++... .+ ...+..+-++-.-.|+|..
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~h 205 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGH 205 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhh
Confidence 467888999999999999999999997665 12 2333344444444455433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 967 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.98 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.97 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.97 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.97 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.97 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.96 | |
| 3hve_A | 256 | Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis | 99.96 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.95 | |
| 3i3n_A | 279 | Kelch-like protein 11; structural genomics, BTB, K | 99.95 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.95 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.95 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.95 | |
| 3htm_A | 172 | Speckle-type POZ protein; BTB, SPOP, ubiquitin, li | 99.94 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.94 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.94 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.93 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.92 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.92 | |
| 3hqi_A | 312 | Speckle-type POZ protein; SPOP, ubiquitin, puckere | 99.92 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.92 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.92 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.91 | |
| 4eoz_A | 145 | Speckle-type POZ protein; E3 ubiquitin ligase, nuc | 99.91 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.91 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.91 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.91 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.9 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.9 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.9 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.9 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.89 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.89 | |
| 2if5_A | 120 | Zinc finger and BTB domain-containing protein 7A; | 99.88 | |
| 2vkp_A | 109 | BTB/POZ domain-containing protein 6; protein-bindi | 99.88 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.88 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.88 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.87 | |
| 1r29_A | 127 | B-cell lymphoma 6 protein; BTB domain, transcripti | 99.87 | |
| 2ppi_A | 144 | Gigaxonin; BTB domain, protein degradation, struct | 99.86 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.86 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.86 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.86 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.86 | |
| 3b84_A | 119 | Zinc finger and BTB domain-containing protein 48; | 99.86 | |
| 2z8h_A | 138 | Transcription regulator protein BACH1; BTB, POZ, d | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 1buo_A | 121 | POZ domain, protein (promyelocytic leukemia zinc f | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.85 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.85 | |
| 2vpk_A | 116 | Myoneurin; transcription regulation, transcription | 99.85 | |
| 2yy9_A | 135 | Zinc finger and BTB domain-containing protein 48; | 99.84 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.84 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.84 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.83 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.83 | |
| 2q81_A | 119 | MIZ-1 protein; BTB/POZ domain, transcription; HET: | 99.83 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.83 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.82 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.82 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.82 | |
| 2ihc_A | 124 | Transcription regulator protein BACH1; BRIC-A-BRAC | 99.82 | |
| 3ohu_A | 125 | Transcription regulator protein BACH2; BTB/POZ dom | 99.82 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.82 | |
| 3ga1_A | 129 | Nucleus accumbens-associated protein 1; BTB/POZ do | 99.82 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.82 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.81 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.8 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.8 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.8 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.8 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.8 | |
| 3m5b_A | 119 | Zinc finger and BTB domain-containing protein 32; | 99.8 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.79 | |
| 3fkc_A | 116 | Transcriptional regulator kaiso; zinc finger and B | 99.79 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.78 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.77 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.75 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.75 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.75 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.74 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.74 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.74 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.74 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.74 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.73 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.73 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.72 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.71 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.71 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.69 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.68 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.68 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.68 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.68 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.67 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.67 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.66 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.66 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.66 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.65 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.65 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.64 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.62 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.61 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.61 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.6 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.6 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.58 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.58 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.57 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.55 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.54 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.54 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.53 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.52 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.52 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.52 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.51 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.49 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.49 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.47 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.47 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.47 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.45 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.45 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.45 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.44 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.44 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.43 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.43 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.42 | |
| 2ast_A | 159 | S-phase kinase-associated protein 1A; SCF-substrat | 99.4 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.4 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.39 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.37 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.37 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.35 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.35 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.35 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.35 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.34 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.34 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.32 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.31 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.3 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.29 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.28 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.27 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.26 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.26 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.25 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.25 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.24 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.24 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.24 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.23 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.23 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.23 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.22 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.21 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.2 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.2 | |
| 4ajy_C | 97 | Transcription elongation factor B polypeptide 1; E | 99.19 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.19 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.18 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.18 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.17 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.17 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.17 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.16 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.16 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.16 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.15 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.15 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.13 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.13 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.12 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.12 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.11 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.11 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.1 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.1 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.09 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.08 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.08 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.07 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.07 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.06 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.06 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.06 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.05 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.05 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.04 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.03 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.02 | |
| 1fs1_B | 141 | SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le | 99.0 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.0 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.0 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.99 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.99 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.98 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.98 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.95 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.93 | |
| 2p1m_A | 160 | SKP1-like protein 1A; F-BOX, leucine rich repeat, | 98.86 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.84 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.79 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.69 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.66 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.64 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.63 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.62 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.61 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.61 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.57 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.56 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.56 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.55 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.5 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.48 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.47 | |
| 1hv2_A | 99 | Elongin C, ELC1; protein-peptide complex, signalin | 98.47 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.43 | |
| 2fnj_C | 96 | Transcription elongation factor B polypeptide 1; b | 98.38 | |
| 3v7d_A | 169 | Suppressor of kinetochore protein 1; WD 40 domain, | 98.35 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.34 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.33 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.27 | |
| 3drz_A | 107 | BTB/POZ domain-containing protein KCTD5; potassium | 98.25 | |
| 2eqx_A | 105 | Kelch repeat and BTB domain-containing protein 4; | 98.24 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.21 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.2 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.14 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.12 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.03 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.03 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.02 | |
| 1vcb_B | 112 | Protein (elongin C); tumor suppressor, cancer, ubi | 97.99 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.88 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.75 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.62 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.61 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.58 | |
| 3drx_A | 202 | BTB/POZ domain-containing protein KCTD5; golgi, gr | 97.38 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 96.95 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.92 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.81 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 96.49 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.43 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.34 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.22 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.17 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.02 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.83 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 95.48 | |
| 1s1g_A | 124 | Potassium voltage-gated channel subfamily D membe; | 95.47 | |
| 3kvt_A | 115 | Potassium channel protein SHAW; tetramerization do | 95.26 | |
| 1t1d_A | 100 | Protein (potassium channel KV1.1); potassium chann | 94.78 | |
| 1nn7_A | 105 | Potassium channel KV4.2; teteramerization domain, | 94.65 | |
| 2nz0_B | 140 | Potassium voltage-gated channel subfamily D membe; | 94.57 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.18 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.18 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.86 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.29 | |
| 2l6f_A | 215 | Focal adhesion kinase 1, linker1, paxillin, linke | 91.69 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.31 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 92.29 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 91.85 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.71 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 91.66 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.52 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.0 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 89.89 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 89.36 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.09 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.97 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.13 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.83 | |
| 4dpv_Z | 584 | Protein (parvovirus coat protein); complex (virus/ | 85.48 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 85.13 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 84.92 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 83.63 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 81.4 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 80.6 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 80.27 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=349.02 Aligned_cols=373 Identities=16% Similarity=0.123 Sum_probs=351.3
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALED 601 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~ 601 (967)
+..+...+.| ++|+..++++++.+|++..++..+|.++...|++++|+..+++++..+| ++.++..+|.++...|+
T Consensus 6 a~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDF---EAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 4555666655 9999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH
Q 002100 602 YDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR 681 (967)
Q Consensus 602 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~ 681 (967)
+++|+..|++++.++|++..++ ..++.++...+++++| +..+.++++.+|+....+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~------~~l~~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~ 138 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGY------INLAAALVAAGDMEGA------------------VQAYVSALQYNPDLYCVR 138 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHHSCSSHH------------------HHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCcHHHH
Confidence 9999999999999999999888 7789999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCC
Q 002100 682 FRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLN 761 (967)
Q Consensus 682 ~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~ 761 (967)
..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++.
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--------------- 203 (388)
T 1w3b_A 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL--------------- 203 (388)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---------------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999666
Q ss_pred CCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHHHHH
Q 002100 762 PESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLARVYHLKNQRKAAYD 839 (967)
Q Consensus 762 ~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~ 839 (967)
.++.++|.++...|++++|+..|+++++.+ +..++..+|.++...|++++|+.
T Consensus 204 -------------------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 258 (388)
T 1w3b_A 204 -------------------------DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp -------------------------HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 789999999999999999999999999854 45689999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-
Q 002100 840 EMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD- 914 (967)
Q Consensus 840 ~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~- 914 (967)
.|+++++.+|+++.++..++.. |++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++..|+
T Consensus 259 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp HHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999843 99999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 915 LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 915 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
..++..+|.++...|++++|+..|+++++++|++++++..+..+...+
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 468999999999999999999999999999999999988877766544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-37 Score=349.22 Aligned_cols=375 Identities=17% Similarity=0.127 Sum_probs=348.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhCchh--HHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHH
Q 002100 462 QLGVVMLEREEYKDAQNWFKAAVEAGHIY--SLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKM 539 (967)
Q Consensus 462 ~lG~~~~~~g~y~~A~~~f~~al~~~~~~--a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~ 539 (967)
.+|..++..|++++|+..|+++++.+|.. +...++.++ ...+.+ ++|+
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---------------------------~~~~~~---~~a~ 53 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIH---------------------------FQCRRL---DRSA 53 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---------------------------HHTTCH---HHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---------------------------HHcCCH---HHHH
Confidence 46888999999999999999999998844 344444444 344433 8899
Q ss_pred HHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 540 MDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 540 ~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
..++++++.+|.++.+|..+|.++...|++++|+..|++++..+| +..++..+|.++...|++++|+..|+++++.+|+
T Consensus 54 ~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 133 (388)
T 1w3b_A 54 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred chHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHH
Q 002100 619 YMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAM 698 (967)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~ 698 (967)
+..++ ..++.++...+++++| +..|.++++.+|.+...+..+|.++...|++++|+
T Consensus 134 ~~~~~------~~l~~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 189 (388)
T 1w3b_A 134 LYCVR------SDLGNLLKALGRLEEA------------------KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp CTHHH------HHHHHHHHTTSCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred cHHHH------HHHHHHHHHccCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99888 7789999999999999 89999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcC
Q 002100 699 RSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRC 778 (967)
Q Consensus 699 ~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~ 778 (967)
..|+++++.+|++..++..+|.++...|++++|+..|++++.++|++.
T Consensus 190 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-------------------------------- 237 (388)
T 1w3b_A 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA-------------------------------- 237 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH--------------------------------
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH--------------------------------
Confidence 999999999999999999999999999999999999999999999666
Q ss_pred CCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHH
Q 002100 779 PSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYE 856 (967)
Q Consensus 779 ~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 856 (967)
.++.++|.++...|++++|+..|+++++.+ ...++..+|.++...|++++|+..|+++++..|+++.++.
T Consensus 238 --------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 309 (388)
T 1w3b_A 238 --------VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309 (388)
T ss_dssp --------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH
Confidence 789999999999999999999999999854 4569999999999999999999999999999999999999
Q ss_pred HHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCC
Q 002100 857 KRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGD 930 (967)
Q Consensus 857 ~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~ 930 (967)
.++. .|++++|+..|+++++++|++..++..+|.++.+.|++++|+..|+++++++|+ ..++..+|.++..+|+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9984 399999999999999999999999999999999999999999999999999999 5699999999988875
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=357.05 Aligned_cols=436 Identities=10% Similarity=-0.025 Sum_probs=352.7
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCc-hhHHHHHHHHHHhcCChHHHHHHHHHHHhc------cCcchhHHHH
Q 002100 456 KQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGH-IYSLVGVARTKFKRGHKYSAYKLMNSLISD------YTPVGWMYQE 528 (967)
Q Consensus 456 ~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~-~~a~~~la~~~~~~g~~~~A~~~l~~~i~~------~~~~g~~~~~ 528 (967)
....+..++..+...|++++|+..|++++...| ...+..++.++...|++.+|...+++++.. +...+.+|..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVK 162 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 345667778888888888888888888887655 355566778888888888888887776442 1223445555
Q ss_pred HhhcCChHHHHHHHHHhHhhC----------------CCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHH
Q 002100 529 RSLYCSGKEKMMDLNTATELD----------------PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLEL 591 (967)
Q Consensus 529 ~~~y~~~~~A~~~~~~al~l~----------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 591 (967)
.+.+ ++|+..|++..... |.+..+|..+|.+|...|++++|++.|+++++.+| +..++..
T Consensus 163 ~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 163 LYDW---QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp TTCH---HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhhH---HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 5544 77777777532222 22367788888888888888888888888888888 6666665
Q ss_pred HHH--------------------------------------HHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHh
Q 002100 592 RAW--------------------------------------ISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVE 633 (967)
Q Consensus 592 la~--------------------------------------~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 633 (967)
++. .|...|++++|+..|+++++. |.+...+ ..++
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~------~~l~ 312 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLL------LCKA 312 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHH------HHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHH------HHHH
Confidence 543 344567788888888887776 5556666 5667
Q ss_pred hhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhH
Q 002100 634 TLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHE 713 (967)
Q Consensus 634 ~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~ 713 (967)
.++...+++++| +..|+++++.+|.+...+..++.++...|++++|+..++++++..|++..
T Consensus 313 ~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 374 (597)
T 2xpi_A 313 DTLFVRSRFIDV------------------LAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAV 374 (597)
T ss_dssp HHHHHTTCHHHH------------------HHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHhcCHHHH------------------HHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHH
Confidence 778888888887 78888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhH
Q 002100 714 KLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLG 793 (967)
Q Consensus 714 a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg 793 (967)
++..+|.+|...|++++|+..|+++++++|++. .+|+.+|
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------------------------------~~~~~l~ 414 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG----------------------------------------PAWIGFA 414 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH----------------------------------------HHHHHHH
Confidence 888888888888888888888888887777544 7899999
Q ss_pred HHHHhcccHHHHHHHHHHHhccCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHH
Q 002100 794 SVYVDCEKLDLAADCYMNALNIKH--TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMA 867 (967)
Q Consensus 794 ~~~~~~g~~~~A~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A 867 (967)
.+|...|++++|++.|+++++..+ ..++..++.++...|++++|++.|+++++..|+++.+|..++.. |++++|
T Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 415 HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999988544 45899999999999999999999999999999999999998843 999999
Q ss_pred HHHHHHhhcc------CCCC-chHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHH
Q 002100 868 KSDLSMATQL------DPMR-TYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCE 939 (967)
Q Consensus 868 ~~~l~~al~l------~p~~-~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~ 939 (967)
+..|+++++. +|+. ..++..+|.++.+.|++++|+..|+++++..|+ ..++..+|.+|...|++++|+..|+
T Consensus 495 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999988 6664 678999999999999999999999999999997 5699999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHH
Q 002100 940 AALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 940 ~al~~~P~~~~~l~l~~r~~ 959 (967)
++++++|+++.+...+.++-
T Consensus 575 ~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 575 ESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHTT
T ss_pred HHHhcCCCChHHHHHHHHHH
Confidence 99999999999988887654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=335.08 Aligned_cols=421 Identities=14% Similarity=0.073 Sum_probs=368.9
Q ss_pred ccchHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHh-CchhHHHHHHHHHHhcCChHHHHHHHH
Q 002100 435 KSNTTVMLLERLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEA-GHIYSLVGVARTKFKRGHKYSAYKLMN 513 (967)
Q Consensus 435 ~~~~~~~ll~~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~l~ 513 (967)
..+.+..+++.+....++ ...++.+|.++...|++++|+..|++++.. ....++..++.++.+.|++++|...|+
T Consensus 99 ~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 174 (597)
T 2xpi_A 99 QYKCAAFVGEKVLDITGN----PNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLG 174 (597)
T ss_dssp CHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred CchHHHHHHHHHHhhCCC----chHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHh
Confidence 445555666665544332 256788999999999999999999999766 336678889999999999999999999
Q ss_pred HHHhc-----------------------cCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHH---------
Q 002100 514 SLISD-----------------------YTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAI--------- 561 (967)
Q Consensus 514 ~~i~~-----------------------~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~--------- 561 (967)
+.... +...+.+|...+.+ ++|+..|+++++.+|++..++..++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 251 (597)
T 2xpi_A 175 ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF---DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEE 251 (597)
T ss_dssp SSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHH
T ss_pred ccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhH
Confidence 64332 22345555566655 99999999999999999988777654
Q ss_pred -----------------------------HHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 562 -----------------------------LLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 562 -----------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
.|...|++++|++.|+++++..++..++..++.+|...|++++|+..|+++
T Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 331 (597)
T 2xpi_A 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI 331 (597)
T ss_dssp HHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344678999999999999988449999999999999999999999999999
Q ss_pred HHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc
Q 002100 613 LTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLN 692 (967)
Q Consensus 613 l~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g 692 (967)
++.+|++..++ ..++.++...+++++| +..+.++++.+|.+...+..+|.+|...|
T Consensus 332 ~~~~~~~~~~~------~~l~~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 332 LEIDPYNLDVY------PLHLASLHESGEKNKL------------------YLISNDLVDRHPEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHCTTCCTTH------HHHHHHHHHHTCHHHH------------------HHHHHHHHHHCTTSHHHHHHHHHHHHHTT
T ss_pred HHcCcccHHHH------HHHHHHHHHhCCHHHH------------------HHHHHHHHhhCcccHHHHHHHHHHHHHhc
Confidence 99999988888 6778889999999999 89999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHH
Q 002100 693 SQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLL 772 (967)
Q Consensus 693 ~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~l 772 (967)
++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++..|++.
T Consensus 388 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------------------- 441 (597)
T 2xpi_A 388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH-------------------------- 441 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS--------------------------
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch--------------------------
Confidence 999999999999999999999999999999999999999999999998888544
Q ss_pred HHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---
Q 002100 773 EEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEK--- 847 (967)
Q Consensus 773 e~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~--- 847 (967)
.+++.+|.+|...|++++|+++|+++++. ....++..++.++...|++++|++.|+++++.
T Consensus 442 --------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 442 --------------LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp --------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 78999999999999999999999999884 45568999999999999999999999999998
Q ss_pred ---ccCC-HHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHH
Q 002100 848 ---ARNN-ASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLL 918 (967)
Q Consensus 848 ---~p~~-~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~ 918 (967)
.|++ ..+|..++. .|++++|+..|+++++++|+++.++..+|.+|...|++++|+..|+++++++|+. .++
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 587 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMAS 587 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Confidence 4443 678888884 3999999999999999999999999999999999999999999999999999994 588
Q ss_pred HHHHHHHH
Q 002100 919 HLRAAFHD 926 (967)
Q Consensus 919 ~~~a~~~~ 926 (967)
..++.+|.
T Consensus 588 ~~l~~~~~ 595 (597)
T 2xpi_A 588 DLLKRALE 595 (597)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 88887764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-33 Score=326.47 Aligned_cols=411 Identities=15% Similarity=0.063 Sum_probs=339.7
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCch-hHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcC
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHI-YSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYC 533 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~-~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~ 533 (967)
..+.+++.+|..++..|+|++|+..|+++++.+|. .++..++ .++...+.|
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la---------------------------~~~~~~g~~- 55 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLS---------------------------ACYVSVGDL- 55 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHH---------------------------HHHHHHTCH-
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHH---------------------------HHHHHHhhH-
Confidence 46778999999999999999999999999999873 3334444 445555544
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHH---HhcCHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISI---ALEDYDGALRDV 609 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~---~~g~~~~A~~~~ 609 (967)
++|+..++++++++|++..+++.+|.++...|++++|+..|++++...| +............ ......+++..+
T Consensus 56 --~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (514)
T 2gw1_A 56 --KKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDI 133 (514)
T ss_dssp --HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----
T ss_pred --HHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 4332222222222 222222222222
Q ss_pred HHHHHh------------------C------------------------CCchHHhhhhhhhhhHhhhHHH---hhchhh
Q 002100 610 RALLTL------------------D------------------------PSYMMFYGQLHGDNLVETLQPL---VQQWSQ 644 (967)
Q Consensus 610 ~~al~l------------------~------------------------p~~~~~~~~~~~~~~~~~l~~~---~~~~~~ 644 (967)
+.+... . |++...+ ...+..+.. .+++++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 207 (514)
T 2gw1_A 134 DTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKE------LMNGLSNLYKRSPESYDK 207 (514)
T ss_dssp -----------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHH------HHHHHHHHSSCCTTHHHH
T ss_pred HHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHH------HHHHHHHHHhhhhccHHH
Confidence 211100 0 2223333 444454443 667777
Q ss_pred HhhHHHHHhhhccccccchHHHHHHHHh-----c--C-------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 002100 645 ADCWMQLYDRWSSVDDIGSLAVVHHMLA-----N--D-------PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS 710 (967)
Q Consensus 645 A~~~~~l~~~~~~~d~~~al~~~~~~l~-----~--~-------p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~ 710 (967)
| +..+.++++ . + |..+..++.+|.++...|++++|+..|+++++.+|.
T Consensus 208 A------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~ 269 (514)
T 2gw1_A 208 A------------------DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR 269 (514)
T ss_dssp H------------------HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC
T ss_pred H------------------HHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc
Confidence 7 888888888 5 4 445678899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHH
Q 002100 711 EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALN 790 (967)
Q Consensus 711 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~ 790 (967)
..++..+|.++...|++++|+..+++++..+|.+. .++.
T Consensus 270 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------------------------------~~~~ 308 (514)
T 2gw1_A 270 -VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS----------------------------------------SVYY 308 (514)
T ss_dssp -HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT----------------------------------------HHHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH----------------------------------------HHHH
Confidence 99999999999999999999999999999988554 6889
Q ss_pred HhHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CCh
Q 002100 791 NLGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDR 864 (967)
Q Consensus 791 ~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~ 864 (967)
.+|.++...|++++|+..|+++++.. ...++..+|.++...|++++|+..++++++..|+++.++..++.. |++
T Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 309 HRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDF 388 (514)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999999854 456999999999999999999999999999999999999998843 999
Q ss_pred HHHHHHHHHhhccCCCCch------HHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHH
Q 002100 865 DMAKSDLSMATQLDPMRTY------PYRYRAAVLMD---DHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHT 934 (967)
Q Consensus 865 ~~A~~~l~~al~l~p~~~~------~~~~la~~~~~---~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A 934 (967)
++|+..|+++++.+|++.. ++..+|.++.. .|++++|+..|+++++..|+ ..++..+|.++..+|++++|
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999998866 99999999999 99999999999999999998 56899999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHh
Q 002100 935 QRDCEAALCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 935 ~~~~~~al~~~P~~~~~l~l~~r~~~ 960 (967)
+..|+++++++|++++++..+.-.+.
T Consensus 469 ~~~~~~a~~~~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 469 ITLFEESADLARTMEEKLQAITFAEA 494 (514)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHH
Confidence 99999999999999998876654443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=323.16 Aligned_cols=411 Identities=13% Similarity=0.081 Sum_probs=330.1
Q ss_pred chHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhH--HHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHh
Q 002100 453 SWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYS--LVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERS 530 (967)
Q Consensus 453 ~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a--~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~ 530 (967)
....+.+++.+|..++..|+|++|+..|+++++.+|... +..++. ++...+
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~---------------------------~~~~~g 73 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISA---------------------------CYISTG 73 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHH---------------------------HHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHH---------------------------HHHHcC
Confidence 345678899999999999999999999999999987443 444444 455555
Q ss_pred hcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHH
Q 002100 531 LYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDV 609 (967)
Q Consensus 531 ~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~ 609 (967)
.| ++|+..|+++++++|++..+++.+|.++...|++++|+..|+ ++..+| ....+ ...+...+...+|+..+
T Consensus 74 ~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~ 146 (537)
T 3fp2_A 74 DL---EKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGAS---IEPMLERNLNKQAMKVL 146 (537)
T ss_dssp CH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHH
T ss_pred CH---HHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHH---HHHHHHHHHHHHHHHHH
Confidence 44 999999999999999999999999999999999999999995 888888 33322 22455566678899999
Q ss_pred HHHHHhCCCchHHhhhhh-------------------------------hhhhH--------hhhHHHhhchhhHhhHHH
Q 002100 610 RALLTLDPSYMMFYGQLH-------------------------------GDNLV--------ETLQPLVQQWSQADCWMQ 650 (967)
Q Consensus 610 ~~al~l~p~~~~~~~~~~-------------------------------~~~~~--------~~l~~~~~~~~~A~~~~~ 650 (967)
++++...|.......... ....+ +......+++++|
T Consensus 147 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A----- 221 (537)
T 3fp2_A 147 NENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS----- 221 (537)
T ss_dssp HHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH-----
T ss_pred HHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH-----
Confidence 988877554331110000 00000 1111122334444
Q ss_pred HHhhhccccccchHHHHHHHHhcCCCChH-------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 002100 651 LYDRWSSVDDIGSLAVVHHMLANDPGKSL-------LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILY 723 (967)
Q Consensus 651 l~~~~~~~d~~~al~~~~~~l~~~p~~~~-------~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~ 723 (967)
+..++++++.+|.++. ++..+|.++...|++++|+..|+++++.+|+ ..++..+|.++.
T Consensus 222 -------------~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~ 287 (537)
T 3fp2_A 222 -------------TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLA 287 (537)
T ss_dssp -------------HHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTC
T ss_pred -------------HHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHH
Confidence 8999999999999865 4677888999999999999999999999999 999999999999
Q ss_pred HcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHH
Q 002100 724 DTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLD 803 (967)
Q Consensus 724 ~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~ 803 (967)
..|++++|+..++++++.+|++. .++..+|.++...|+++
T Consensus 288 ~~~~~~~A~~~~~~~~~~~~~~~----------------------------------------~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLNPEYP----------------------------------------PTYYHRGQMYFILQDYK 327 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHCTTCH----------------------------------------HHHHHHHHHHHHTTCHH
T ss_pred HhcCHHHHHHHHHHHhccCCCCH----------------------------------------HHHHHHHHHHHhcCCHH
Confidence 99999999999999999999665 78999999999999999
Q ss_pred HHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhcc
Q 002100 804 LAADCYMNALNIK--HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQL 877 (967)
Q Consensus 804 ~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l 877 (967)
+|+..|+++++.+ ...++..+|.++...|++++|+..++++++..|+++.++..++.. |++++|+..|+++++.
T Consensus 328 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 9999999999854 456999999999999999999999999999999999999999853 9999999999999999
Q ss_pred CCCCchH------HHHHHHHHHhC----------CCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 878 DPMRTYP------YRYRAAVLMDD----------HKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 878 ~p~~~~~------~~~la~~~~~~----------g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
+|++... +..+|.++... |++++|+..|+++++.+|+ ..++..+|.+|..+|++++|+..|++
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 8876544 55678899998 9999999999999999998 56999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHH
Q 002100 941 ALCLDPNHTDTLELYD 956 (967)
Q Consensus 941 al~~~P~~~~~l~l~~ 956 (967)
+++++|++.+......
T Consensus 488 al~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 488 SAILARTMDEKLQATT 503 (537)
T ss_dssp HHHHC--CHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHh
Confidence 9999999998876554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-30 Score=299.33 Aligned_cols=349 Identities=13% Similarity=0.090 Sum_probs=300.8
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
..+...+.+++..+|+++..++.+|..+...|++++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4566778888889999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh---HHHHHH-------
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS---LLRFRQ------- 684 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~---~~~~~~------- 684 (967)
.+|++..++ ..++.++...+++++| +..+.++++.+|.+. ..+..+
T Consensus 89 ~~p~~~~~~------~~l~~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 144 (450)
T 2y4t_A 89 LKMDFTAAR------LQRGHLLLKQGKLDEA------------------EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ 144 (450)
T ss_dssp HCTTCHHHH------HHHHHHHHHTTCHHHH------------------HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHhcCCCChhhHHHHHHHHHHHHHH
Confidence 999998888 7788999999999999 899999999999887 665544
Q ss_pred -----HHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcC
Q 002100 685 -----SLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSS 759 (967)
Q Consensus 685 -----g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~ 759 (967)
|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..|+++++.+|++.
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------- 211 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT------------- 211 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH-------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------------
Confidence 67799999999999999999999999999999999999999999999999999999988665
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--HHHHHHH------------H
Q 002100 760 LNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH--TRAHQGL------------A 825 (967)
Q Consensus 760 ~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~a~~~l------------a 825 (967)
.++..+|.+|...|++++|+..|+++++..+ ...+..+ |
T Consensus 212 ---------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 264 (450)
T 2y4t_A 212 ---------------------------EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 264 (450)
T ss_dssp ---------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999998443 3444444 9
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHccCCHH----HHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC
Q 002100 826 RVYHLKNQRKAAYDEMTKLIEKARNNAS----AYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK 897 (967)
Q Consensus 826 ~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~ 897 (967)
.++...|++++|+..|+++++..|+++. .+..++. .|++++|+..++++++++|+++.++..+|.++...|+
T Consensus 265 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 265 EELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM 344 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999854 5666663 3999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC-hHHHHHHHH------------HHHHcC-----ChHHHHHHHHH-HHhcCCCc
Q 002100 898 EAEAIAELSRAIAFKPD-LQLLHLRAA------------FHDSMG-----DHLHTQRDCEA-ALCLDPNH 948 (967)
Q Consensus 898 ~~eAi~~~~kal~~~p~-~~~~~~~a~------------~~~~~g-----~~~~A~~~~~~-al~~~P~~ 948 (967)
+++|+..|++++++.|+ ..++..++. +|..+| +.+++.+.|++ ++..+|++
T Consensus 345 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 345 YDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999 457777884 455556 67788999997 88888875
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.8e-29 Score=280.35 Aligned_cols=321 Identities=16% Similarity=0.105 Sum_probs=219.3
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHh
Q 002100 555 PYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVE 633 (967)
Q Consensus 555 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 633 (967)
.++.+|..++..|++++|+..|+++++.+| ++.++..+|.++...|++++|+..++++++.+|++..++ ..++
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~l~ 78 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAAR------LQRG 78 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH------HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHH------HHHH
Confidence 444445555555555555555555555444 444555555555555555555555555555555444444 3444
Q ss_pred hhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCC---CChHHHHH------------HHHHHHHhcCHHHHH
Q 002100 634 TLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDP---GKSLLRFR------------QSLLLLRLNSQKAAM 698 (967)
Q Consensus 634 ~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p---~~~~~~~~------------~g~~~~~~g~~~~A~ 698 (967)
.++...+++++| +..+.++++.+| .++..+.. +|.++...|++++|+
T Consensus 79 ~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 79 HLLLKQGKLDEA------------------EDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp HHHHHHTCHHHH------------------HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHcCChHHH------------------HHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 444444444444 444444444444 44444433 467777788888888
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcC
Q 002100 699 RSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRC 778 (967)
Q Consensus 699 ~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~ 778 (967)
..++++++..|+++.++..+|.++...|++++|+..++++++..|++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------------------------------- 188 (359)
T 3ieg_A 141 TFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT-------------------------------- 188 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCH--------------------------------
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--------------------------------
Confidence 888888888888888888888888888888888888888887777554
Q ss_pred CCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH--HHH------------HHHHHHHHHhCCHHHHHHHHHHH
Q 002100 779 PSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT--RAH------------QGLARVYHLKNQRKAAYDEMTKL 844 (967)
Q Consensus 779 ~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--~a~------------~~la~~~~~~g~~~~A~~~~~~a 844 (967)
.++..+|.++...|++++|+..|+++++..+. .++ ..+|.++...|++++|+..++++
T Consensus 189 --------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 260 (359)
T 3ieg_A 189 --------EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 260 (359)
T ss_dssp --------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67777777777788888888888777773332 222 23366666666666666666666
Q ss_pred HHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHH
Q 002100 845 IEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAA 923 (967)
Q Consensus 845 l~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~ 923 (967)
++..|++...+ ..++..+|.++...|++++|+..|+++++.+|+ ..++..+|.
T Consensus 261 ~~~~~~~~~~~--------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 261 MKTEPSVAEYT--------------------------VRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHCCSSHHHH--------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhcCCCchHHH--------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 66555432211 134667999999999999999999999999997 569999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhhhc
Q 002100 924 FHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNEQ 965 (967)
Q Consensus 924 ~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~~~ 965 (967)
++..+|++++|+..|+++++++|+++++...+.++....++.
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 356 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998887654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-29 Score=287.45 Aligned_cols=384 Identities=15% Similarity=0.125 Sum_probs=302.7
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchh--HHHHHHHHHHhcCChHHHHHHHHHHHhccCcc
Q 002100 445 RLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIY--SLVGVARTKFKRGHKYSAYKLMNSLISDYTPV 522 (967)
Q Consensus 445 ~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~--a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~ 522 (967)
.+.+....+|..+.+++.+|..++..|+|++|+..|+++++.+|.. ++..++.
T Consensus 14 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~------------------------- 68 (450)
T 2y4t_A 14 GTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRAT------------------------- 68 (450)
T ss_dssp ---------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-------------------------
T ss_pred cccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHH-------------------------
Confidence 3444556678889999999999999999999999999999987743 4444444
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-Ch---hHHHHH------
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SP---DCLELR------ 592 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~---~~~~~l------ 592 (967)
++...+.+ ++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+| +. .++..+
T Consensus 69 --~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 143 (450)
T 2y4t_A 69 --VFLAMGKS---KAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM 143 (450)
T ss_dssp --HHHHTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHCCCH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 44444444 8999999999999999999999999999999999999999999999999 55 665544
Q ss_pred ------HHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHH
Q 002100 593 ------AWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAV 666 (967)
Q Consensus 593 ------a~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~ 666 (967)
|.++...|++++|+..|+++++.+|++..++ ..++.++...+++++| +..
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~l~~~~~~~g~~~~A------------------~~~ 199 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR------ELRAECFIKEGEPRKA------------------ISD 199 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCGGGG------------------HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH------HHHHHHHHHCCCHHHH------------------HHH
Confidence 6779999999999999999999999988888 7788999999999998 899
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHH------------HHHHHHcCChHHHHHH
Q 002100 667 VHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYE------------GWILYDTGHREEALAK 734 (967)
Q Consensus 667 ~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~l------------g~~~~~~g~~~eA~~~ 734 (967)
+.++++.+|.++..+..+|.++...|++++|+..|++++...|++...+..+ |.++...|++++|+..
T Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 279 (450)
T 2y4t_A 200 LKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK 279 (450)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877665 8899999999999999
Q ss_pred HHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 735 AEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 735 ~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
|++++++.|++.. .....+..+|.++...|++++|+..|+++++
T Consensus 280 ~~~~l~~~p~~~~------------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 280 YESVMKTEPSIAE------------------------------------YTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHCCSSHH------------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchH------------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999988886541 0125788889999999999999999999887
Q ss_pred c--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 002100 815 I--KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVL 892 (967)
Q Consensus 815 ~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~ 892 (967)
. +...++..+|.++...|++++|+..|+++++.+|++..++..++.. .....+.-. . ..|
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~------~~~~~~~~~-----~-------~~y 385 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA------QRLLKQSQK-----R-------DYY 385 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH------HHHHHHHHS-----C-------CSG
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH------HHHhhcccc-----h-------hHH
Confidence 4 4456899999999999999999999999999999988888877632 000000000 0 112
Q ss_pred HhCC-----CHHHHHHHHHH-HHhcCCCh----H-------HHHHHHHHHHHcCChHHHHH
Q 002100 893 MDDH-----KEAEAIAELSR-AIAFKPDL----Q-------LLHLRAAFHDSMGDHLHTQR 936 (967)
Q Consensus 893 ~~~g-----~~~eAi~~~~k-al~~~p~~----~-------~~~~~a~~~~~~g~~~~A~~ 936 (967)
...| +.+++.+.|.+ +++..|+. . .+..++.+|..++|.+++..
T Consensus 386 ~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 386 KILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp GGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 2222 55666777775 66666651 1 55667888888888776543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=297.59 Aligned_cols=396 Identities=14% Similarity=0.079 Sum_probs=325.6
Q ss_pred hccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHH
Q 002100 517 SDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWI 595 (967)
Q Consensus 517 ~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~ 595 (967)
+.+...|..+...+.| ++|+..|+++++.+| ++.++..+|.++...|++++|+..|+++++.+| +..++..+|.+
T Consensus 7 ~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKY---DDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCH---HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccH---HHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 3455678888888866 999999999999999 589999999999999999999999999999999 89999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHH-------------------Hhhhc
Q 002100 596 SIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQL-------------------YDRWS 656 (967)
Q Consensus 596 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l-------------------~~~~~ 656 (967)
+..+|++++|+..|++++..+|.+....... ............+.++ +.. .....
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPM---LERNLNKQAMSKLKEK---FGDIDTATATPTELSTQPAKERKDKQE 156 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHH---HHHHHHHHHHHHHTTC------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHH---HHHHHHHHHHHHHHHH---HHHHHHHHHhhhhccCChhhHHHhhcc
Confidence 9999999999999999999999766554211 0111111111111111 000 00000
Q ss_pred cccccchHHHHHHHHhc--------CCCChHHHHHHHHHHHH---hcCHHHHHHHHHHHHh-----c---------CCch
Q 002100 657 SVDDIGSLAVVHHMLAN--------DPGKSLLRFRQSLLLLR---LNSQKAAMRSLRLARN-----Y---------STSE 711 (967)
Q Consensus 657 ~~d~~~al~~~~~~l~~--------~p~~~~~~~~~g~~~~~---~g~~~~A~~~l~~al~-----~---------~p~~ 711 (967)
.......+..+...... .|.++..++.+|..+.. .|++++|+..|+++++ . .|.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (514)
T 2gw1_A 157 NLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236 (514)
T ss_dssp CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred CCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence 00010011111111111 14557888999998887 9999999999999999 5 3566
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHH
Q 002100 712 HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNN 791 (967)
Q Consensus 712 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~ 791 (967)
..++..+|.++...|++++|+..++++++.+|+ . .++..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~----------------------------------------~~~~~ 275 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-V----------------------------------------NSYIY 275 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-H----------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-H----------------------------------------HHHHH
Confidence 788999999999999999999999999999885 4 78999
Q ss_pred hHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChH
Q 002100 792 LGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRD 865 (967)
Q Consensus 792 lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~ 865 (967)
+|.++...|++++|+..|+++++.+ ...++..+|.++...|++++|+..|+++++..|++..++..++.. ++++
T Consensus 276 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 355 (514)
T 2gw1_A 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFD 355 (514)
T ss_dssp HHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999954 456999999999999999999999999999999999999999842 9999
Q ss_pred HHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-H------HHHHHHHHHHH---cCChHHHH
Q 002100 866 MAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-Q------LLHLRAAFHDS---MGDHLHTQ 935 (967)
Q Consensus 866 ~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~------~~~~~a~~~~~---~g~~~~A~ 935 (967)
+|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|+. . ++..+|.++.. .|++++|+
T Consensus 356 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 356 DCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999988874 2 89999999999 99999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 002100 936 RDCEAALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 936 ~~~~~al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
..|+++++.+|++..++..+.++....+
T Consensus 436 ~~~~~a~~~~~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 436 NLLEKASKLDPRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 9999999999999998877777665443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=294.80 Aligned_cols=336 Identities=11% Similarity=0.061 Sum_probs=245.7
Q ss_pred CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC---------ChhHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCC
Q 002100 549 DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV---------SPDCLELRAWISIAL--EDYDGALRDVRALLTLDP 617 (967)
Q Consensus 549 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~la~~~~~~--g~~~~A~~~~~~al~l~p 617 (967)
+|....+|.++|.+|..+|++++|+..|++++.+.+ .+.++..+|+.+... ++|++|+..|+++++++|
T Consensus 90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p 169 (472)
T 4g1t_A 90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169 (472)
T ss_dssp TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence 566677888899999999999999999999887632 356777888777665 478999999999999999
Q ss_pred CchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH----hcC
Q 002100 618 SYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR----LNS 693 (967)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~----~g~ 693 (967)
+++.++ ..++.+....+++.++ ..|+..++++++.+|.++.++..+|..+.. .++
T Consensus 170 ~~~~~~------~~~~~~~~~l~~~~~~---------------~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 170 KNPEFT------SGLAIASYRLDNWPPS---------------QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEE 228 (472)
T ss_dssp TCHHHH------HHHHHHHHHHHHSCCC---------------CCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-----
T ss_pred CCHHHH------HHHHHHHHHhcCchHH---------------HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhH
Confidence 998887 5556666555555443 345889999999999998888888776654 467
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHH
Q 002100 694 QKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLE 773 (967)
Q Consensus 694 ~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le 773 (967)
+++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|++.
T Consensus 229 ~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--------------------------- 281 (472)
T 4g1t_A 229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA--------------------------- 281 (472)
T ss_dssp -CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------------------
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH---------------------------
Confidence 78899999999999999999999999999999999999999999999999766
Q ss_pred HHhcCCCCCCchHHHHHHhHHHH-------------------HhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhC
Q 002100 774 EALRCPSDGLRKGQALNNLGSVY-------------------VDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKN 832 (967)
Q Consensus 774 ~~~~~~~~~~~~~~a~~~lg~~~-------------------~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g 832 (967)
.++.++|.+| ...+.+++|+..|+++++.++.. ++..+|.++...|
T Consensus 282 -------------~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 282 -------------YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred -------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 3333333333 33456788999999999865554 8899999999999
Q ss_pred CHHHHHHHHHHHHHHccCCHH---HHHHHHc-----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHH
Q 002100 833 QRKAAYDEMTKLIEKARNNAS---AYEKRSE-----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAE 904 (967)
Q Consensus 833 ~~~~A~~~~~~al~~~p~~~~---~~~~~~~-----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~ 904 (967)
++++|+..|+++++..|++.. ++...+. .+++++|+..|+++++++|+...... ....+...
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~ 418 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKI 418 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----------HHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH----------HHHHHHHH
Confidence 999999999999999887544 2444442 38899999999999999998754322 23456677
Q ss_pred HHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 002100 905 LSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELY 955 (967)
Q Consensus 905 ~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~ 955 (967)
++++++.+|+ ..++..+|.+|..+|++++|++.|++||++.|.+|.+...+
T Consensus 419 ~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 419 AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 8899999998 56999999999999999999999999999999988775543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-30 Score=297.63 Aligned_cols=369 Identities=12% Similarity=0.035 Sum_probs=266.7
Q ss_pred hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhC---------c--hhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcc
Q 002100 454 WQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAG---------H--IYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPV 522 (967)
Q Consensus 454 ~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~---------~--~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~ 522 (967)
...+..+..||.++..+|+|++|+++|++|+++. + ..++..+|.+|..+|++
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~----------------- 110 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL----------------- 110 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCH-----------------
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCh-----------------
Confidence 3446678889999999999999999999999872 1 12233455555555555
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhh--------CCCCchhHHHHHHHHHh--cCcHHHHHHHHHHHhccCC-ChhHHHH
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATEL--------DPTLSYPYKYRAILLVE--ENKLAAAITEINRIIGFKV-SPDCLEL 591 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l--------~P~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-~~~~~~~ 591 (967)
++|+..|++++++ .+..+.++..+|.++.. .++|++|++.|+++++++| +++++..
T Consensus 111 -------------~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~ 177 (472)
T 4g1t_A 111 -------------SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177 (472)
T ss_dssp -------------HHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred -------------HHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5555555555544 23445667777766655 4579999999999999999 8999988
Q ss_pred HHHHHHHh---cCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhH----HHhhchhhHhhHHHHHhhhccccccchH
Q 002100 592 RAWISIAL---EDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQ----PLVQQWSQADCWMQLYDRWSSVDDIGSL 664 (967)
Q Consensus 592 la~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~----~~~~~~~~A~~~~~l~~~~~~~d~~~al 664 (967)
++.++..+ +++++|++.|+++++++|++..++ ..++..+ ...+++++| +
T Consensus 178 ~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~------~~l~~~~~~~~~~~~~~~~a------------------~ 233 (472)
T 4g1t_A 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK------VLLALKLHKMREEGEEEGEG------------------E 233 (472)
T ss_dssp HHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHH------HHHHHHHHHCC------CHH------------------H
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHH------HHHHHHHHHHHhhhhHHHHH------------------H
Confidence 88886654 667889999999999999998877 3344333 334455555 8
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcC------------------
Q 002100 665 AVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTG------------------ 726 (967)
Q Consensus 665 ~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g------------------ 726 (967)
..+++++..+|..+.++..+|.+|...|++++|+..|+++++.+|+++.++..+|.+|...+
T Consensus 234 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~ 313 (472)
T 4g1t_A 234 KLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313 (472)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHH
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999998886532
Q ss_pred -ChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHH
Q 002100 727 -HREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLA 805 (967)
Q Consensus 727 -~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A 805 (967)
.+++|+..++++++++|.+. .++..+|.+|...|++++|
T Consensus 314 ~~~~~A~~~~~~a~~~~~~~~----------------------------------------~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 314 ELIGHAVAHLKKADEANDNLF----------------------------------------RVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHHHHHHHHHHHHHHCTTTC----------------------------------------CCHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHhhcCCchh----------------------------------------hhhhhHHHHHHHhccHHHH
Confidence 34556666666666666433 6788999999999999999
Q ss_pred HHHHHHHhccCcHH-----HHHHHHHH-HHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCC
Q 002100 806 ADCYMNALNIKHTR-----AHQGLARV-YHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDP 879 (967)
Q Consensus 806 ~~~~~~Al~~~~~~-----a~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p 879 (967)
+.+|+++++.++.. .+..+|.+ +...|++++|+..|++++++.|++...... ...+...++++++.+|
T Consensus 354 ~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~------~~~l~~~~~~~l~~~p 427 (472)
T 4g1t_A 354 EYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM------KDKLQKIAKMRLSKNG 427 (472)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH------HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH------HHHHHHHHHHHHHhCC
Confidence 99999999855432 46667765 457899999999999999999987654333 2455677889999999
Q ss_pred CCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHH
Q 002100 880 MRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRA 922 (967)
Q Consensus 880 ~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a 922 (967)
.++.++.++|.+|...|++++|+++|++|+++.|. +.+...+|
T Consensus 428 ~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 428 ADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp -CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 99999999999999999999999999999999887 44554444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=300.35 Aligned_cols=370 Identities=16% Similarity=0.104 Sum_probs=302.3
Q ss_pred chhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc
Q 002100 522 VGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE 600 (967)
Q Consensus 522 ~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g 600 (967)
.|..+...+.| ++|+..|+++++.+|+++.++..+|.++..+|++++|++.|+++++.+| ++.++..+|.++..+|
T Consensus 31 ~g~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 107 (537)
T 3fp2_A 31 RGNHFFTAKNF---NEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG 107 (537)
T ss_dssp HHHHHHHTTCC---C-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccH---HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC
Confidence 46667777766 9999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc-------
Q 002100 601 DYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN------- 673 (967)
Q Consensus 601 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~------- 673 (967)
++++|+..|+ ++..+|+....... .+...+...+| +..+.+++..
T Consensus 108 ~~~~A~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~a------------------~~~~~~~l~~~~~~~~~ 159 (537)
T 3fp2_A 108 NFTDAMFDLS-VLSLNGDFDGASIE---------PMLERNLNKQA------------------MKVLNENLSKDEGRGSQ 159 (537)
T ss_dssp CHHHHHHHHH-HHC--------------------CHHHHHHHHHH------------------HHHHHHHCC-------C
T ss_pred CHHHHHHHHH-HHhcCCCCChHHHH---------HHHHHHHHHHH------------------HHHHHHHHHhCcccccc
Confidence 9999999995 88888887765521 11111222233 3333333332
Q ss_pred ------------------------------CCCChHHHHHHH--------HHHHHhcCHHHHHHHHHHHHhcCCchhH--
Q 002100 674 ------------------------------DPGKSLLRFRQS--------LLLLRLNSQKAAMRSLRLARNYSTSEHE-- 713 (967)
Q Consensus 674 ------------------------------~p~~~~~~~~~g--------~~~~~~g~~~~A~~~l~~al~~~p~~~~-- 713 (967)
++........++ ......+++++|+..|+++++.+|+++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~ 239 (537)
T 3fp2_A 160 VLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR 239 (537)
T ss_dssp CCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHH
T ss_pred ccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhh
Confidence 122112222222 2233456899999999999999999755
Q ss_pred -----HHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHH
Q 002100 714 -----KLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQA 788 (967)
Q Consensus 714 -----a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a 788 (967)
++..+|.++...|++++|+..++++++++|+ . .+
T Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~----------------------------------------~~ 278 (537)
T 3fp2_A 240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-P----------------------------------------NS 278 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-H----------------------------------------HH
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-c----------------------------------------hH
Confidence 5778889999999999999999999999885 4 68
Q ss_pred HHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----C
Q 002100 789 LNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----C 862 (967)
Q Consensus 789 ~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~ 862 (967)
+..+|.++...|++++|+.+|+++++. +...++..+|.++...|++++|+..|+++++..|++..++..++.. |
T Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 358 (537)
T 3fp2_A 279 YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQG 358 (537)
T ss_dssp HHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 899999999999999999999999984 4556999999999999999999999999999999999999999853 9
Q ss_pred ChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHc-------
Q 002100 863 DRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-------QLLHLRAAFHDSM------- 928 (967)
Q Consensus 863 ~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-------~~~~~~a~~~~~~------- 928 (967)
++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|+. ..+..+|.++..+
T Consensus 359 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 438 (537)
T 3fp2_A 359 KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQ 438 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchh
Confidence 99999999999999999999999999999999999999999999999987652 2467789999999
Q ss_pred ---CChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 002100 929 ---GDHLHTQRDCEAALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 929 ---g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
|++++|+..|+++++.+|++..++..+..+....+
T Consensus 439 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 439 LDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998887777665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-28 Score=267.73 Aligned_cols=328 Identities=14% Similarity=0.170 Sum_probs=269.8
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALED 601 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~ 601 (967)
|..+...+.| ++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+| ++.++..+|.++...|+
T Consensus 10 ~~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 10 GKKLLAAGQL---ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHHHTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCH---HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCC
Confidence 5555666655 9999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHhCC---CchHHhhhhh------hhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHh
Q 002100 602 YDGALRDVRALLTLDP---SYMMFYGQLH------GDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLA 672 (967)
Q Consensus 602 ~~~A~~~~~~al~l~p---~~~~~~~~~~------~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~ 672 (967)
+++|+..|+++++.+| ++...+..+. .....+.++...+++++| +..+.++++
T Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A------------------~~~~~~~~~ 148 (359)
T 3ieg_A 87 LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAA------------------ITFLDKILE 148 (359)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH------------------HHHHHHHHH
Confidence 9999999999999999 8777763210 011225677777777777 999999999
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Q 002100 673 NDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKA 752 (967)
Q Consensus 673 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 752 (967)
.+|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++.+|+....+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-- 226 (359)
T 3ieg_A 149 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA-- 226 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH--
T ss_pred hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997662111
Q ss_pred HHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH------HHHHHHHH
Q 002100 753 YALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT------RAHQGLAR 826 (967)
Q Consensus 753 ~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~------~a~~~la~ 826 (967)
.+... ........+|.++...|++++|+..|+++++..+. .++..+|.
T Consensus 227 ------------------~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 227 ------------------HYKQV--------KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICH 280 (359)
T ss_dssp ------------------HHHHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred ------------------HHHHH--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 11000 01245667799999999999999999999984433 25777999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHH
Q 002100 827 VYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELS 906 (967)
Q Consensus 827 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~ 906 (967)
++...|++++|+..|+++++.+|+ ++.++..+|.++...|++++|+..|+
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~g~~~~A~~~~~ 330 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQMEPD------------------------------NVNALKDRAEAYLIEEMYDEAIQDYE 330 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999998888876654 44566666777777777777777777
Q ss_pred HHHhcCCCh-HHHHHHHHHHHHcC
Q 002100 907 RAIAFKPDL-QLLHLRAAFHDSMG 929 (967)
Q Consensus 907 kal~~~p~~-~~~~~~a~~~~~~g 929 (967)
++++++|+. .++..++.++..++
T Consensus 331 ~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 331 AAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHHHHHH
Confidence 777777763 35555555555443
|
| >3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-29 Score=269.50 Aligned_cols=201 Identities=13% Similarity=0.195 Sum_probs=165.8
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCC--CCccceEEeccCCCCHHHHHHHHHh
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFI--ESRREKVNFSQNGISVEAMRAAEEF 315 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~--e~~~~~i~~~~~~~~~~~~~~~l~~ 315 (967)
+...+...+.++++++.+|||+|+|+|++|+|||.|||++|+||++||.+++. |+...+|++++ +++++|+.+++|
T Consensus 14 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~--v~~~~f~~ll~~ 91 (256)
T 3hve_A 14 HAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEG--ISVMVMREILDY 91 (256)
T ss_dssp THHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSS--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCC--CCHHHHHHHHhh
Confidence 34455567778889999999999999999999999999999999999999887 67788999977 999999999999
Q ss_pred HcCCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhh-----
Q 002100 316 SRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELP----- 390 (967)
Q Consensus 316 ~Yt~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~----- 390 (967)
+|||++ .++.+++.+++.+|++|+++.|++.|+++|.+.++ ++||+.++.+|..|+++.|.+.|.+||.+||.
T Consensus 92 ~Yt~~~-~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~ 169 (256)
T 3hve_A 92 IFSGQI-RLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIA-AENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSST 169 (256)
T ss_dssp HHHSCC-CCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCC-SSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCCC-cccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCC-HhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCC
Confidence 999999 89999999999999999999999999999999999 99999999999999999999999999999998
Q ss_pred ---hcCCchhHhhhhccchHHHHHHhhcchHHHHHHHHHHhccCcccccchHHHHHHHHH
Q 002100 391 ---CSMQNPNVMRIFCSAEARERLAMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLERLV 447 (967)
Q Consensus 391 ---~~l~~~~~~~ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~l~ 447 (967)
..++.+.+..++.++++. +.+|..+|.+++.|+..+++.|......+++++.
T Consensus 170 ~~f~~L~~~~l~~lL~~d~L~-----v~~E~~v~~av~~W~~~~~~~R~~~~~~ll~~VR 224 (256)
T 3hve_A 170 EEFLELSPQKLKEVISLEKLN-----VGNERYVFEAVIRWIAHDTEIRKVHMKDVMSALW 224 (256)
T ss_dssp HHHHSSCHHHHHHHHHCC------------CTTHHHHTTTCCC--CCSTTTHHHHHHHHH
T ss_pred cchhcCCHHHHHHHHccCCCC-----CCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCC
Confidence 356666777788888888 7888999999999999998888888888887753
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=253.34 Aligned_cols=290 Identities=12% Similarity=0.025 Sum_probs=246.7
Q ss_pred HHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCch
Q 002100 542 LNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYM 620 (967)
Q Consensus 542 ~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 620 (967)
....+...|+++..+..+|..++..|++++|+..|++++..+| +..++..++.++...|++++|+..++++++.+|++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 4456667788999999999999999999999999999999999 889999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhHhhhHHHhh-chhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHH
Q 002100 621 MFYGQLHGDNLVETLQPLVQ-QWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMR 699 (967)
Q Consensus 621 ~~~~~~~~~~~~~~l~~~~~-~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~ 699 (967)
.++ ..++.++...+ ++++| +..+.++++.+|.++..+..+|.++...|++++|+.
T Consensus 91 ~~~------~~l~~~~~~~~~~~~~A------------------~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 146 (330)
T 3hym_B 91 VSW------FAVGCYYLMVGHKNEHA------------------RRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMA 146 (330)
T ss_dssp HHH------HHHHHHHHHSCSCHHHH------------------HHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHH------HHHHHHHHHhhhhHHHH------------------HHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHH
Confidence 988 77899999999 89888 999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCC
Q 002100 700 SLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCP 779 (967)
Q Consensus 700 ~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~ 779 (967)
.|+++++..|++..++..+|.++...|++++|+..++++++.+|++.
T Consensus 147 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--------------------------------- 193 (330)
T 3hym_B 147 AYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP--------------------------------- 193 (330)
T ss_dssp HHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH---------------------------------
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh---------------------------------
Confidence 99999999999999999999999999999999999999999999655
Q ss_pred CCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC-----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002100 780 SDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK-----------HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKA 848 (967)
Q Consensus 780 ~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~-----------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 848 (967)
.++..+|.++...|++++|+.+|+++++.. ...++..+|.++...|++++|+..|+++++..
T Consensus 194 -------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 194 -------FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp -------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -------HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 789999999999999999999999999832 23589999999999999999999988888776
Q ss_pred cCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHH
Q 002100 849 RNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFH 925 (967)
Q Consensus 849 p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~ 925 (967)
|++ +.++..+|.++...|++++|+..|+++++++|+ ..++..++.++
T Consensus 267 ~~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 267 PQN------------------------------ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp TTC------------------------------SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred ccc------------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 654 455555666666666666666666666666655 33555555555
|
| >3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-29 Score=269.11 Aligned_cols=201 Identities=19% Similarity=0.268 Sum_probs=172.8
Q ss_pred cccccccccccccCCCCcccEEEEEc---CeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEecc----CCCCHHHHH
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIG---NDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQ----NGISVEAMR 310 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~---~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~----~~~~~~~~~ 310 (967)
+...+...+.+++.++.+|||+|+|+ |++|+|||+|||++|+||++||.++|.|+...+|+|++ +++++++|+
T Consensus 15 h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~ 94 (279)
T 3i3n_A 15 HCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVE 94 (279)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHH
Confidence 34455566777888899999999998 99999999999999999999999999999999999971 149999999
Q ss_pred HHHHhHcCCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhh
Q 002100 311 AAEEFSRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELP 390 (967)
Q Consensus 311 ~~l~~~Yt~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~ 390 (967)
.+++|+|||++ .++.+++.+++.+|++|+++.|++.|+++|.+.++ ++||+.++.+|..|+++.|.+.|.+||.+||.
T Consensus 95 ~ll~~~Ytg~~-~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~ 172 (279)
T 3i3n_A 95 AVIEYMYTGRI-RVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLH-LSNCVAIHSLAHMYTLSQLALKAADMIRRNFH 172 (279)
T ss_dssp HHHHHHHHSEE-EEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHH
T ss_pred HHHHhhCcCCc-ccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCC-cchHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 99999999999 89999999999999999999999999999999999 99999999999999999999999999999998
Q ss_pred h--------cCCchhHhhhhccchHHHHHHhhcchHHHHHHHHHHhccCcccccchHHHHHHH
Q 002100 391 C--------SMQNPNVMRIFCSAEARERLAMVGHASFVLYYFLSQIGMEEDMKSNTTVMLLER 445 (967)
Q Consensus 391 ~--------~l~~~~~~~ll~s~~~~~r~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~ll~~ 445 (967)
. .++.+.+..++.++++. +.+|..+|.+++.|+..+.+.+......++..
T Consensus 173 ~v~~~~~f~~L~~~~l~~lL~~d~L~-----v~sE~~vf~av~~W~~~~~~~r~~~~~~ll~~ 230 (279)
T 3i3n_A 173 KVIQDEEFYTLPFHLIRDWLSDLEIT-----VDSEEVLFETVLKWVQRNAEERERYFEELFKL 230 (279)
T ss_dssp HHTTSSGGGGSCHHHHHHHHTCSSCC-----CSCHHHHHHHHHHHHHTTHHHHTTTHHHHHTT
T ss_pred HHhcCcChhcCCHHHHHHHhcCcCCC-----CCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 4 55666777788888888 88899999999999998877777777777654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-25 Score=257.40 Aligned_cols=386 Identities=11% Similarity=0.016 Sum_probs=308.6
Q ss_pred HHHHHHHHHHHHHhh----cCChHHHHHHHHHHHHhCchhHHHHHHHHHHh----cCChHHHHHHHHHHHhccCcchhHH
Q 002100 455 QKQLAFHQLGVVMLE----REEYKDAQNWFKAAVEAGHIYSLVGVARTKFK----RGHKYSAYKLMNSLISDYTPVGWMY 526 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~----~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~----~g~~~~A~~~l~~~i~~~~~~g~~~ 526 (967)
..+.+++.+|..|+. .+++++|+.+|+++++.++..+...|+.+|.. .++
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~---------------------- 94 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQD---------------------- 94 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC----------------------
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC----------------------
Confidence 456789999999999 99999999999999999888888888887755 333
Q ss_pred HHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHh----cCcHHHHHHHHHHHhccCCChhHHHHHHHHHHH----
Q 002100 527 QERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVE----ENKLAAAITEINRIIGFKVSPDCLELRAWISIA---- 598 (967)
Q Consensus 527 ~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~---- 598 (967)
.++|+..|+++.+. .++.+++.+|.+|.. .+++++|+..|+++.... ++.+++.+|.+|..
T Consensus 95 --------~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~ 163 (490)
T 2xm6_A 95 --------YAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-RDSGQQSMGDAYFEGDGV 163 (490)
T ss_dssp --------HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSS
T ss_pred --------HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCC
Confidence 36777777777654 467788888988888 889999999999887643 67888889999888
Q ss_pred hcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHH----hhchhhHhhHHHHHhhhccccccchHHHHHHHHhcC
Q 002100 599 LEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPL----VQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAND 674 (967)
Q Consensus 599 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~----~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~ 674 (967)
.+++++|+..|+++++. +++.++ +.++.++.. .+++++| +..|.++++.
T Consensus 164 ~~d~~~A~~~~~~a~~~--~~~~a~------~~Lg~~y~~g~g~~~~~~~A------------------~~~~~~a~~~- 216 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQ--GNVWSC------NQLGYMYSRGLGVERNDAIS------------------AQWYRKSATS- 216 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHH------HHHHHHHHHTSSSCCCHHHH------------------HHHHHHHHHT-
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHH------HHHHHHHhcCCCCCcCHHHH------------------HHHHHHHHHC-
Confidence 78899999999998876 355555 667777776 6677777 7888888765
Q ss_pred CCChHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchH
Q 002100 675 PGKSLLRFRQSLLLLR----LNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYD----TGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 675 p~~~~~~~~~g~~~~~----~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~ 746 (967)
.++..++.+|.+|.. .+++++|+..|+++++. .++.+++.+|.++.. .+++++|+.+|+++++... .
T Consensus 217 -~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~--~ 291 (490)
T 2xm6_A 217 -GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGN--S 291 (490)
T ss_dssp -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC--H
T ss_pred -CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC--H
Confidence 457788888888887 78899999999998876 456788889999888 8899999999998875432 2
Q ss_pred HHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc-----ccHHHHHHHHHHHhccCcHHHH
Q 002100 747 AFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC-----EKLDLAADCYMNALNIKHTRAH 821 (967)
Q Consensus 747 ~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~-----g~~~~A~~~~~~Al~~~~~~a~ 821 (967)
.+++++|.+|... +++++|+.+|+++++.++..++
T Consensus 292 ----------------------------------------~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~ 331 (490)
T 2xm6_A 292 ----------------------------------------DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQ 331 (490)
T ss_dssp ----------------------------------------HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHH
Confidence 5778888888887 8999999999999998888899
Q ss_pred HHHHHHHHHhC---CHHHHHHHHHHHHHHccCCHHHHHHHHc--------cCChHHHHHHHHHhhccCCCCchHHHHHHH
Q 002100 822 QGLARVYHLKN---QRKAAYDEMTKLIEKARNNASAYEKRSE--------YCDRDMAKSDLSMATQLDPMRTYPYRYRAA 890 (967)
Q Consensus 822 ~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~--------~~~~~~A~~~l~~al~l~p~~~~~~~~la~ 890 (967)
+.+|.+|...| ++++|+.+|+++++. .++.+++.+|. .+++++|+..|+++++.. ++.++.++|.
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~ 407 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Confidence 99999988866 788899999998876 56777777773 268888999999888764 5788999999
Q ss_pred HHHh----CCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 002100 891 VLMD----DHKEAEAIAELSRAIAFKPD----LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDT 951 (967)
Q Consensus 891 ~~~~----~g~~~eAi~~~~kal~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 951 (967)
+|.. .+++++|+.+|+++++..|+ +.+...++.++.. +.+.|.+..++.++..|++..+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~~~ 474 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEAWA 474 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 89999999999999999854 2367777776654 4566666666666666665544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-26 Score=250.15 Aligned_cols=299 Identities=14% Similarity=0.081 Sum_probs=264.9
Q ss_pred HHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhh
Q 002100 577 NRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRW 655 (967)
Q Consensus 577 ~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~ 655 (967)
...+...| +++.+..+|..+...|++++|+..|+++++.+|.+...+ ...+.++...+++++|
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~------~~~~~~~~~~~~~~~A---------- 75 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCL------PVHIGTLVELNKANEL---------- 75 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTH------HHHHHHHHHHTCHHHH----------
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhH------HHHHHHHHHhhhHHHH----------
Confidence 34444455 788999999999999999999999999999999998877 6677888899999999
Q ss_pred ccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHH
Q 002100 656 SSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLN-SQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAK 734 (967)
Q Consensus 656 ~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~ 734 (967)
+..+.++++.+|.++..++.+|.++...| ++++|+..|+++++.+|+++.++..+|.++...|++++|+..
T Consensus 76 --------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 76 --------FYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp --------HHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred --------HHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 735 AEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 735 ~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
++++++..|+.. .++..+|.++...|++++|+.+|+++++
T Consensus 148 ~~~a~~~~~~~~----------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 148 YFTAAQLMKGCH----------------------------------------LPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHTTTCS----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhccccH----------------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999988544 6788899999999999999999999999
Q ss_pred cC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 002100 815 IK--HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVL 892 (967)
Q Consensus 815 ~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~ 892 (967)
.. ...++..+|.++...|++++|+..++++++..|.... ....|..+.++..+|.++
T Consensus 188 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------------~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 188 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN---------------------EVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC---------------------SCTTTTCCHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc---------------------cccccHHHHHHHHHHHHH
Confidence 54 4568999999999999999999999999987764110 011256788999999999
Q ss_pred HhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 002100 893 MDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 893 ~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~ 960 (967)
...|++++|+..|+++++..|+ ..++..+|.++..+|++++|+..|+++++++|+++.++..+.++-+
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 9999999999999999999998 5699999999999999999999999999999999999998888664
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-24 Score=250.47 Aligned_cols=379 Identities=12% Similarity=-0.015 Sum_probs=321.9
Q ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCc
Q 002100 474 KDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLS 553 (967)
Q Consensus 474 ~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~ 553 (967)
..++..++++.+.++..+...++.++..- . +.-.+.++|+..|+++++. +++
T Consensus 24 ~~~~~~~~~~a~~g~~~a~~~lg~~y~~g-~-------------------------~~~~~~~~A~~~~~~a~~~--~~~ 75 (490)
T 2xm6_A 24 NVNLEQLKQKAESGEAKAQLELGYRYFQG-N-------------------------ETTKDLTQAMDWFRRAAEQ--GYT 75 (490)
T ss_dssp -CCHHHHHHHHHTTCHHHHHHHHHHHHHT-S-------------------------SSCCCHHHHHHHHHHHHHT--TCH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHcC-C-------------------------CCCcCHHHHHHHHHHHHHC--CCH
Confidence 44577788888888888888877766430 0 0011448888888888875 678
Q ss_pred hhHHHHHHHHHh----cCcHHHHHHHHHHHhccCCChhHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCchHHhhh
Q 002100 554 YPYKYRAILLVE----ENKLAAAITEINRIIGFKVSPDCLELRAWISIA----LEDYDGALRDVRALLTLDPSYMMFYGQ 625 (967)
Q Consensus 554 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~ 625 (967)
.+++.+|.+|.. .+++++|+..|+++.+.. ++.+++.+|.+|.. .+++++|+..|+++.+. +++.++
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~-- 150 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQ-- 150 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH--
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH--
Confidence 899999999999 999999999999998643 78899999999999 89999999999999876 456666
Q ss_pred hhhhhhHhhhHHH----hhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH----hcCHHHH
Q 002100 626 LHGDNLVETLQPL----VQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR----LNSQKAA 697 (967)
Q Consensus 626 ~~~~~~~~~l~~~----~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~----~g~~~~A 697 (967)
+.++.++.. .+++++| +..|+++++. .++..++.+|.+|.. .+++++|
T Consensus 151 ----~~Lg~~y~~g~g~~~d~~~A------------------~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 151 ----QSMGDAYFEGDGVTRDYVMA------------------REWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp ----HHHHHHHHHTSSSCCCHHHH------------------HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred ----HHHHHHHHcCCCCCCCHHHH------------------HHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 677888876 6677777 8999999886 578999999999998 8999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHH
Q 002100 698 MRSLRLARNYSTSEHEKLVYEGWILYD----TGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLE 773 (967)
Q Consensus 698 ~~~l~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le 773 (967)
+..|+++.+.. ++.+++.+|.++.. .+++++|+.+|+++++..+ .
T Consensus 207 ~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~--------------------------- 255 (490)
T 2xm6_A 207 AQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN--S--------------------------- 255 (490)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC--H---------------------------
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--H---------------------------
Confidence 99999999864 57899999999997 8999999999999986533 2
Q ss_pred HHhcCCCCCCchHHHHHHhHHHHHh----cccHHHHHHHHHHHhccCcHHHHHHHHHHHHHh-----CCHHHHHHHHHHH
Q 002100 774 EALRCPSDGLRKGQALNNLGSVYVD----CEKLDLAADCYMNALNIKHTRAHQGLARVYHLK-----NQRKAAYDEMTKL 844 (967)
Q Consensus 774 ~~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~-----g~~~~A~~~~~~a 844 (967)
.+++++|.+|.. .+++++|+.+|+++++.++..++..+|.+|... +++++|+.+|+++
T Consensus 256 -------------~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 256 -------------IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp -------------HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 578899999998 899999999999999999999999999999998 9999999999999
Q ss_pred HHHccCCHHHHHHHHcc----C---ChHHHHHHHHHhhccCCCCchHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCC
Q 002100 845 IEKARNNASAYEKRSEY----C---DRDMAKSDLSMATQLDPMRTYPYRYRAAVLMD----DHKEAEAIAELSRAIAFKP 913 (967)
Q Consensus 845 l~~~p~~~~~~~~~~~~----~---~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~----~g~~~eAi~~~~kal~~~p 913 (967)
++. .++.+++.+|.. + ++++|+..|+++++. .++.+++++|.+|.. .+++++|+.+|+++++..
T Consensus 323 ~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~- 397 (490)
T 2xm6_A 323 AEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG- 397 (490)
T ss_dssp HHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred Hhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence 986 456788888743 3 789999999999987 678999999999999 899999999999999875
Q ss_pred ChHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCC---chhHHHHHHHH
Q 002100 914 DLQLLHLRAAFHDS----MGDHLHTQRDCEAALCLDPN---HTDTLELYDKA 958 (967)
Q Consensus 914 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~---~~~~l~l~~r~ 958 (967)
.+.+++.+|.+|.. .+|+++|+.+|++|++.+|+ ++.+...+.++
T Consensus 398 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 398 LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 46799999999999 89999999999999999965 66665554433
|
| >3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-27 Score=236.14 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=139.8
Q ss_pred ccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
++.+...+..+++++.+|||+|+|+|++|+|||.||+++|+||++||.++|.|+...+|.+++ +++++|+.+|+|+||
T Consensus 18 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~--~~~~~f~~~l~~~Yt 95 (172)
T 3htm_A 18 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND--VEPEVFKEMMCFIYT 95 (172)
T ss_dssp CCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECS--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecC--CCHHHHHHHHHHHhC
Confidence 344556667778889999999999999999999999999999999999999999999999977 999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhhcCCch
Q 002100 319 KMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNP 396 (967)
Q Consensus 319 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~l~~~ 396 (967)
|.+ .++.+++.+++.+|++|+++.|++.|+++|.+.++ .+|++.++.+|..|+++.|++.|.+||.+||...+.++
T Consensus 96 ~~~-~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~ 171 (172)
T 3htm_A 96 GKA-PNLDKMADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLETS 171 (172)
T ss_dssp SCC-TTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-------
T ss_pred CCC-CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 999 79999999999999999999999999999999999 99999999999999999999999999999998776554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-26 Score=256.65 Aligned_cols=304 Identities=13% Similarity=0.077 Sum_probs=233.3
Q ss_pred HHHhcCHHHHHH-HHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcC
Q 002100 596 SIALEDYDGALR-DVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAND 674 (967)
Q Consensus 596 ~~~~g~~~~A~~-~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~ 674 (967)
+..+|+|++|+. .|++++.+.|+++... ....+.++.++...+++++| +..+.++++.+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A------------------~~~~~~al~~~ 94 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRD--HPQPFEEGLRRLQEGDLPNA------------------VLLFEAAVQQD 94 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTT--CSSHHHHHHHHHHTTCHHHH------------------HHHHHHHHHSC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccc--hHHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHhC
Confidence 344566777776 7777776666654221 01114566666677777766 67777777777
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 675 PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 675 p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++.+.|+........
T Consensus 95 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-- 172 (368)
T 1fch_A 95 PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA-- 172 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH--
Confidence 777777778888888888888888888888888888888888888888888888888888888888888554100000
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH----HHHHHHHHHHHH
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT----RAHQGLARVYHL 830 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~----~a~~~la~~~~~ 830 (967)
... .........+..++.++ ..|++++|+..|+++++.++. .++..+|.++..
T Consensus 173 --------~~~--------------~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~ 229 (368)
T 1fch_A 173 --------EEG--------------AGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 229 (368)
T ss_dssp -----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred --------HHH--------------hhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH
Confidence 000 00001113344677777 999999999999999995544 589999999999
Q ss_pred hCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHH
Q 002100 831 KNQRKAAYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELS 906 (967)
Q Consensus 831 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~ 906 (967)
.|++++|+..|+++++..|+++.++..+|.. |++++|+..|+++++++|+++.++..+|.++...|++++|+..|+
T Consensus 230 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 309 (368)
T 1fch_A 230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 309 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999843 999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCh------------HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 907 RAIAFKPDL------------QLLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 907 kal~~~p~~------------~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
+++++.|+. .++..+|.++..+|++++|...++++++.
T Consensus 310 ~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 310 EALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 999988865 58999999999999999999999988765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=250.44 Aligned_cols=300 Identities=13% Similarity=0.047 Sum_probs=253.4
Q ss_pred HHHHHhhcCChHHHHH-HHHHhHhhCCCC----chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHH
Q 002100 525 MYQERSLYCSGKEKMM-DLNTATELDPTL----SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIA 598 (967)
Q Consensus 525 ~~~~~~~y~~~~~A~~-~~~~al~l~P~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~ 598 (967)
.+...+.| ++|+. .|++++++.|++ ...++.+|.++...|++++|+..|+++++.+| ++.++..+|.++..
T Consensus 34 ~~~~~~~~---~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 110 (368)
T 1fch_A 34 AHPWLSDY---DDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 110 (368)
T ss_dssp ---------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHH---HHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444555 88998 999999998877 46689999999999999999999999999999 89999999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh
Q 002100 599 LEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS 678 (967)
Q Consensus 599 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~ 678 (967)
.|++++|+..|+++++++|++..++ ..++.++...+++++| +..+.++++.+|...
T Consensus 111 ~g~~~~A~~~~~~al~~~~~~~~~~------~~l~~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~ 166 (368)
T 1fch_A 111 NEQELLAISALRRCLELKPDNQTAL------MALAVSFTNESLQRQA------------------CEILRDWLRYTPAYA 166 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCHHHH------------------HHHHHHHHHTSTTTG
T ss_pred CcCHHHHHHHHHHHHhcCCCCHHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCcCcH
Confidence 9999999999999999999998888 7788999999999999 899999999999887
Q ss_pred HHHH----------------HHHHHHHHhcCHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 679 LLRF----------------RQSLLLLRLNSQKAAMRSLRLARNYSTS--EHEKLVYEGWILYDTGHREEALAKAEESIS 740 (967)
Q Consensus 679 ~~~~----------------~~g~~~~~~g~~~~A~~~l~~al~~~p~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 740 (967)
..+. .++.++ ..|++++|+..|+++++.+|+ ++.++..+|.++...|++++|+..|++++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 167 HLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7665 456666 999999999999999999999 889999999999999999999999999999
Q ss_pred cccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--cH
Q 002100 741 IQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--HT 818 (967)
Q Consensus 741 ~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~ 818 (967)
++|+.. .+++++|.++...|++++|+.+|+++++.+ ..
T Consensus 246 ~~~~~~----------------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 285 (368)
T 1fch_A 246 VRPNDY----------------------------------------LLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 285 (368)
T ss_dssp HCTTCH----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hCcCCH----------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 988655 789999999999999999999999999844 45
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCH
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKE 898 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~ 898 (967)
.++..+|.++..+|++++|+..|+++++..|++... --...|....+|..+|.++...|++
T Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP-------------------RGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-------------------------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc-------------------cccccchhhHHHHHHHHHHHHhCCh
Confidence 689999999999999999999999999998864211 0112455678889999999999999
Q ss_pred HHHHHHHHHHHhc
Q 002100 899 AEAIAELSRAIAF 911 (967)
Q Consensus 899 ~eAi~~~~kal~~ 911 (967)
++|...+.++++.
T Consensus 347 ~~A~~~~~~~l~~ 359 (368)
T 1fch_A 347 DAYGAADARDLST 359 (368)
T ss_dssp GGHHHHHTTCHHH
T ss_pred HhHHHhHHHHHHH
Confidence 9999888877654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-23 Score=242.74 Aligned_cols=412 Identities=11% Similarity=-0.020 Sum_probs=288.9
Q ss_pred hhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchh--HHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHH
Q 002100 450 ATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIY--SLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQ 527 (967)
Q Consensus 450 ~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~--a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~ 527 (967)
...+|....+|..++.. ...|++++|...|+++++..|.. .+..++....+.|+.
T Consensus 6 l~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~---------------------- 62 (530)
T 2ooe_A 6 LEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNY---------------------- 62 (530)
T ss_dssp HHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH----------------------
T ss_pred hhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCH----------------------
Confidence 34567777888888884 77899999999999999998744 445555555555554
Q ss_pred HHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHH-HHHhcCcHHHHHH----HHHHHhc---cCC-ChhHHHHHHHHHHH
Q 002100 528 ERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAI-LLVEENKLAAAIT----EINRIIG---FKV-SPDCLELRAWISIA 598 (967)
Q Consensus 528 ~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~---~~p-~~~~~~~la~~~~~ 598 (967)
++|...|+++++.+| +...|...+. .....|++++|.+ .|++++. .+| +...|...+.+...
T Consensus 63 --------~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~ 133 (530)
T 2ooe_A 63 --------DKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKG 133 (530)
T ss_dssp --------HHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhc
Confidence 555556666666665 3445555543 2233455544443 5555543 233 45555555555444
Q ss_pred ---------hcCHHHHHHHHHHHHHhCCCchH--Hhhhhhhhh--------hHhhhHHHhhchhhHhhHHHHHhhhcccc
Q 002100 599 ---------LEDYDGALRDVRALLTLDPSYMM--FYGQLHGDN--------LVETLQPLVQQWSQADCWMQLYDRWSSVD 659 (967)
Q Consensus 599 ---------~g~~~~A~~~~~~al~l~p~~~~--~~~~~~~~~--------~~~~l~~~~~~~~~A~~~~~l~~~~~~~d 659 (967)
.|++++|...|+++++ .|.+.. .+.... .+ ....+....++|..|. .+|..
T Consensus 134 ~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~-~~e~~~~~~~~~~~l~~~~~~~~~A~---~~~~~----- 203 (530)
T 2ooe_A 134 VEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYN-KYEEGINIHLAKKMIEDRSRDYMNAR---RVAKE----- 203 (530)
T ss_dssp SCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHH-HHHHHHCHHHHHHHHHTTHHHHHHHH---HHHHH-----
T ss_pred CCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHH-HHHHhhchhHHHHHHHHhhHHHHHHH---HHHHH-----
Confidence 5667777777777776 454321 110000 00 0000111223344441 11110
Q ss_pred ccchHHHHHHHHhc-----CCCC-------hHHHHHHHHHHHHh------cC----HHHHHHHHHHHHhcCCchhHHHHH
Q 002100 660 DIGSLAVVHHMLAN-----DPGK-------SLLRFRQSLLLLRL------NS----QKAAMRSLRLARNYSTSEHEKLVY 717 (967)
Q Consensus 660 ~~~al~~~~~~l~~-----~p~~-------~~~~~~~g~~~~~~------g~----~~~A~~~l~~al~~~p~~~~a~~~ 717 (967)
+..+...++. .|.. ...|... +.... ++ ...|+..|++++...|.++++|+.
T Consensus 204 ----~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~--~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~ 277 (530)
T 2ooe_A 204 ----YETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY--IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYE 277 (530)
T ss_dssp ----HHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH--HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----HHHHHHHhccccccCCCCCChhHHHHHHHHHHH--HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 1111123332 2332 1223222 22222 22 247889999999999999999999
Q ss_pred HHHHHHH-------cCChH-------HHHHHHHHHHh-cccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCC
Q 002100 718 EGWILYD-------TGHRE-------EALAKAEESIS-IQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDG 782 (967)
Q Consensus 718 lg~~~~~-------~g~~~-------eA~~~~~~al~-~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~ 782 (967)
+|..+.. .|+++ +|+..|+++++ +.|++.
T Consensus 278 ~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~------------------------------------ 321 (530)
T 2ooe_A 278 AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM------------------------------------ 321 (530)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH------------------------------------
T ss_pred HHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH------------------------------------
Confidence 9999986 79987 99999999997 788655
Q ss_pred CchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH
Q 002100 783 LRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH---TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS 859 (967)
Q Consensus 783 ~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 859 (967)
.+|..+|.++...|++++|...|+++++..+ ..+|..++.++...|++++|.+.|+++++..|.....+...+
T Consensus 322 ----~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a 397 (530)
T 2ooe_A 322 ----LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 397 (530)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 7899999999999999999999999999654 248999999999999999999999999999888777666544
Q ss_pred -----ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hH----HHHHHHHHHHHcC
Q 002100 860 -----EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQ----LLHLRAAFHDSMG 929 (967)
Q Consensus 860 -----~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~----~~~~~a~~~~~~g 929 (967)
..|+.++|...|+++++.+|+++.+|..++.++...|++++|...|+++++..|. +. ++.....+....|
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2489999999999999999999999999999999999999999999999998764 22 6777788888999
Q ss_pred ChHHHHHHHHHHHhcCCCch
Q 002100 930 DHLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 930 ~~~~A~~~~~~al~~~P~~~ 949 (967)
+.+.+...++++++..|++.
T Consensus 478 ~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 478 DLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp CHHHHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHHCchhc
Confidence 99999999999999999643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=241.91 Aligned_cols=290 Identities=11% Similarity=0.052 Sum_probs=236.9
Q ss_pred HHHHHHHhHhhCCCCc----hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 538 KMMDLNTATELDPTLS----YPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 538 A~~~~~~al~l~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
+...+.+++...|.++ ..++.+|..+...|++++|+..|++++..+| ++.++..+|.+|...|++++|+..|+++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (365)
T 4eqf_A 46 TVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRC 125 (365)
T ss_dssp -------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455566666655554 4599999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHH--------
Q 002100 613 LTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQ-------- 684 (967)
Q Consensus 613 l~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~-------- 684 (967)
++++|++..++ ..++.++...+++++| +..+.++++.+|.....+..+
T Consensus 126 l~~~p~~~~~~------~~l~~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 181 (365)
T 4eqf_A 126 LELQPNNLKAL------MALAVSYTNTSHQQDA------------------CEALKNWIKQNPKYKYLVKNKKGSPGLTR 181 (365)
T ss_dssp HHHCTTCHHHH------HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCHHHHCC------------
T ss_pred HhcCCCCHHHH------HHHHHHHHccccHHHH------------------HHHHHHHHHhCccchHHHhhhccchHHHH
Confidence 99999998888 7789999999999999 899999999998876666554
Q ss_pred --HHHHHHhcCHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCC
Q 002100 685 --SLLLLRLNSQKAAMRSLRLARNYSTS--EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSL 760 (967)
Q Consensus 685 --g~~~~~~g~~~~A~~~l~~al~~~p~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~ 760 (967)
|.++...|++++|+..|+++++.+|+ ++.++..+|.++...|++++|+..|+++++++|++.
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------------- 247 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY-------------- 247 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--------------
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--------------
Confidence 89999999999999999999999999 899999999999999999999999999999999665
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHH
Q 002100 761 NPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAY 838 (967)
Q Consensus 761 ~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~ 838 (967)
.+++++|.+|...|++++|+.+|+++++. +...++..+|.++..+|++++|+
T Consensus 248 --------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 248 --------------------------SLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp --------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred --------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 78999999999999999999999999984 44569999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002100 839 DEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAI 909 (967)
Q Consensus 839 ~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal 909 (967)
..|+++++..|+..... ..........+|..++.++...|+.+.|.....+.+
T Consensus 302 ~~~~~al~~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQ------------------QVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHCC------------------------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHhCcccCCCc------------------ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 99999999998642110 000111246778888888888898888887766543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=243.35 Aligned_cols=251 Identities=13% Similarity=0.110 Sum_probs=225.9
Q ss_pred HhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCchH
Q 002100 544 TATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALED-YDGALRDVRALLTLDPSYMM 621 (967)
Q Consensus 544 ~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~-~~~A~~~~~~al~l~p~~~~ 621 (967)
.++.++|++..+|..+|.++...|++++|+..|++++.++| +..+|+.+|.++..+|+ +++|+..|++++.++|++..
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~ 167 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ 167 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH
Confidence 46788899999999999999999999999999999999999 89999999999999997 99999999999999999999
Q ss_pred HhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHH
Q 002100 622 FYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSL 701 (967)
Q Consensus 622 ~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l 701 (967)
++ +.++.++...+++++| +..|+++++++|++..+|+.+|.++..+|++++|+..|
T Consensus 168 a~------~~~g~~~~~~g~~~eA------------------l~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~ 223 (382)
T 2h6f_A 168 VW------HHRRVLVEWLRDPSQE------------------LEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV 223 (382)
T ss_dssp HH------HHHHHHHHHHTCCTTH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred HH------HHHHHHHHHccCHHHH------------------HHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 99 8889999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHHHH-cCChHHH-----HHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHH
Q 002100 702 RLARNYSTSEHEKLVYEGWILYD-TGHREEA-----LAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEA 775 (967)
Q Consensus 702 ~~al~~~p~~~~a~~~lg~~~~~-~g~~~eA-----~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~ 775 (967)
+++++++|++..+|+++|.++.. .|..++| +..|++++.++|++.
T Consensus 224 ~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~----------------------------- 274 (382)
T 2h6f_A 224 DQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE----------------------------- 274 (382)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCH-----------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCH-----------------------------
Confidence 99999999999999999999999 5665888 599999999999777
Q ss_pred hcCCCCCCchHHHHHHhHHHHHhcc--cHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhC---------CHHHHHHHHH
Q 002100 776 LRCPSDGLRKGQALNNLGSVYVDCE--KLDLAADCYMNALN--IKHTRAHQGLARVYHLKN---------QRKAAYDEMT 842 (967)
Q Consensus 776 ~~~~~~~~~~~~a~~~lg~~~~~~g--~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g---------~~~~A~~~~~ 842 (967)
.+|+++|.++...| ++++|++.++++ + ++...++..+|.+|..+| .+++|++.|+
T Consensus 275 -----------~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~ 342 (382)
T 2h6f_A 275 -----------SAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCE 342 (382)
T ss_dssp -----------HHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 79999999999988 799999999988 6 445568999999999875 2466777776
Q ss_pred HH-HHHccCCHHHHHHHH
Q 002100 843 KL-IEKARNNASAYEKRS 859 (967)
Q Consensus 843 ~a-l~~~p~~~~~~~~~~ 859 (967)
++ ++.+|.....|..++
T Consensus 343 ~l~~~~DP~r~~~w~~~~ 360 (382)
T 2h6f_A 343 ILAKEKDTIRKEYWRYIG 360 (382)
T ss_dssp HHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhCchhHHHHHHHH
Confidence 66 666666555555554
|
| >3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-25 Score=245.69 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=135.1
Q ss_pred ccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
++++...+.++++++.+|||+|+|+|++|+|||.|||++||||++||.++|.|+...+|+|++ +++++|+.+|+||||
T Consensus 158 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~--~~~~~f~~~L~~iYt 235 (312)
T 3hqi_A 158 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND--VEPEVFKEMMCFIYT 235 (312)
T ss_dssp CCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECS--SCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecC--CCHHHHHHHHHhhcC
Confidence 445556677788889999999999999999999999999999999999999999999999987 999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhhcCCch
Q 002100 319 KMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQNP 396 (967)
Q Consensus 319 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~l~~~ 396 (967)
|.+ .++.+++.+|+.+|++|++++|+..|+++|.+.++ .+|++.++.+|..|++..|++.|++||.+|+...+.++
T Consensus 236 ~~~-~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~-~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~ 311 (312)
T 3hqi_A 236 GKA-PNLDKMADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLETS 311 (312)
T ss_dssp SCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-------
T ss_pred CCC-CChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCC
Confidence 999 78889999999999999999999999999999998 99999999999999999999999999999998766543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=241.39 Aligned_cols=283 Identities=12% Similarity=0.054 Sum_probs=171.7
Q ss_pred HHHHHHhccCC-C----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhH
Q 002100 574 TEINRIIGFKV-S----PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCW 648 (967)
Q Consensus 574 ~~~~~al~~~p-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~ 648 (967)
..+.+++...+ + ...++.+|..+...|++++|+..|+++++.+|++..++ ..++.++...+++++|
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~lg~~~~~~g~~~~A--- 118 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAW------QFLGITQAENENEQAA--- 118 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCHHHH---
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHH------HHHHHHHHHCCCHHHH---
Confidence 44444444444 2 34577777777777777777777777777777666555 4445555555555555
Q ss_pred HHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCCh
Q 002100 649 MQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHR 728 (967)
Q Consensus 649 ~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~ 728 (967)
+..+.++++.+|.++.++..+|.+|...|++++|+..|+++++..|++...+..++
T Consensus 119 ---------------~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~--------- 174 (365)
T 4eqf_A 119 ---------------IVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK--------- 174 (365)
T ss_dssp ---------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------------
T ss_pred ---------------HHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc---------
Confidence 55555555555555555555555555555555555555555555544444333320
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHH
Q 002100 729 EEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADC 808 (967)
Q Consensus 729 ~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~ 808 (967)
. ....+..+|.++...|++++|+.+
T Consensus 175 -------------------------~------------------------------~~~~~~~l~~~~~~~g~~~~A~~~ 199 (365)
T 4eqf_A 175 -------------------------G------------------------------SPGLTRRMSKSPVDSSVLEGVKEL 199 (365)
T ss_dssp ---------------------------------------------------------------------CCHHHHHHHHH
T ss_pred -------------------------c------------------------------chHHHHHHHHHHhhhhhHHHHHHH
Confidence 0 002344455555556666666666
Q ss_pred HHHHhccC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCC
Q 002100 809 YMNALNIK----HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPM 880 (967)
Q Consensus 809 ~~~Al~~~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~ 880 (967)
|+++++.+ ...++..+|.++..+|++++|+..|+++++..|+++.++..+|. .|++++|+..|+++++++|+
T Consensus 200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 279 (365)
T 4eqf_A 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279 (365)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 66655532 23355566666666666666666666666666666666666653 26666666666666777778
Q ss_pred CchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-------------hHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 881 RTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-------------LQLLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 881 ~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
++.++.++|.+|...|++++|+..|++++++.|+ ..++..++.++..+|+.+.|....++.++.
T Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~ 356 (365)
T 4eqf_A 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV 356 (365)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGG
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHH
Confidence 8888999999999999999999999999998876 347889999999999999998887775544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-24 Score=239.44 Aligned_cols=251 Identities=14% Similarity=0.040 Sum_probs=229.9
Q ss_pred HHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcccchHHH
Q 002100 670 MLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGH-REEALAKAEESISIQRSFEAF 748 (967)
Q Consensus 670 ~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~-~~eA~~~~~~al~~~p~~~~~ 748 (967)
++..+|.+..++..+|.++...|++++|+..|+++++++|++..+|+++|.++..+|+ +++|+..|+++++++|++.
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~-- 166 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY-- 166 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH--
Confidence 4677888999999999999999999999999999999999999999999999999997 9999999999999999777
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--HHHHHHHHH
Q 002100 749 FLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH--TRAHQGLAR 826 (967)
Q Consensus 749 ~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~a~~~la~ 826 (967)
.+|+++|.++..+|++++|+.+|++++++++ ..+|.++|.
T Consensus 167 --------------------------------------~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~ 208 (382)
T 2h6f_A 167 --------------------------------------QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208 (382)
T ss_dssp --------------------------------------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHH
Confidence 8999999999999999999999999999554 559999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc-----CChHHH-----HHHHHHhhccCCCCchHHHHHHHHHHhCC
Q 002100 827 VYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY-----CDRDMA-----KSDLSMATQLDPMRTYPYRYRAAVLMDDH 896 (967)
Q Consensus 827 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-----~~~~~A-----~~~l~~al~l~p~~~~~~~~la~~~~~~g 896 (967)
++..+|++++|+..|+++|+.+|++..+|..+|.. +..++| +..|+++++++|++..+|.++|.++...|
T Consensus 209 ~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG 288 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999942 444777 58999999999999999999999999988
Q ss_pred --CHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcC--------C-hHHHHHHHHHH-HhcCCCchhHHHHHHHHHhh
Q 002100 897 --KEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMG--------D-HLHTQRDCEAA-LCLDPNHTDTLELYDKATER 961 (967)
Q Consensus 897 --~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g--------~-~~~A~~~~~~a-l~~~P~~~~~l~l~~r~~~~ 961 (967)
++++|++.+.++ +.+|+ ..++..+|.+|..+| + +++|+..|+++ ++++|.....+..+.+....
T Consensus 289 ~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 289 LSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp GGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 699999999998 88888 458999999999985 3 59999999999 99999999988766665543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-23 Score=227.55 Aligned_cols=267 Identities=16% Similarity=0.169 Sum_probs=235.2
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALED 601 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~ 601 (967)
|..+...+.| ++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+| +..++..+|.++...|+
T Consensus 28 a~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 28 GLSMLKLANL---AEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence 4445555544 9999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCchHHhhhhhhh-------hhH-hh-hHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHh
Q 002100 602 YDGALRDVRALLTLDPSYMMFYGQLHGD-------NLV-ET-LQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLA 672 (967)
Q Consensus 602 ~~~A~~~~~~al~l~p~~~~~~~~~~~~-------~~~-~~-l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~ 672 (967)
+++|+..++++++.+|++...+...... ..+ +. ++...+++++| +..+.++++
T Consensus 105 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A------------------~~~~~~~~~ 166 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYREC------------------RTLLHAALE 166 (327)
T ss_dssp HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHH------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHH------------------HHHHHHHHh
Confidence 9999999999999999988776211000 000 33 56677788888 999999999
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Q 002100 673 NDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKA 752 (967)
Q Consensus 673 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 752 (967)
.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|+..
T Consensus 167 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 240 (327)
T 3cv0_A 167 MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV------ 240 (327)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred HHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--C------------cH
Q 002100 753 YALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--K------------HT 818 (967)
Q Consensus 753 ~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~------------~~ 818 (967)
.++..+|.++...|++++|+.+|+++++. + ..
T Consensus 241 ----------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 286 (327)
T 3cv0_A 241 ----------------------------------RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR 286 (327)
T ss_dssp ----------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHH
T ss_pred ----------------------------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCH
Confidence 68899999999999999999999999984 3 34
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
.++..+|.++..+|++++|...++++++..|+
T Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 287 SMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 58999999999999999999999988887663
|
| >4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-25 Score=217.27 Aligned_cols=137 Identities=20% Similarity=0.253 Sum_probs=102.9
Q ss_pred ccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
++++...+.++++++.+|||+|+|+|++|+|||.||+++|+||++||.++|.|+...+|++++ +++++|+.+|+|+||
T Consensus 9 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~--~~~~~~~~~l~~~Y~ 86 (145)
T 4eoz_A 9 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND--VEPEVFKEMMCFIYT 86 (145)
T ss_dssp CCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECS--SCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecC--CCHHHHHHHHHhhcc
Confidence 344556667778889999999999999999999999999999999999999999899999987 999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhChHHHHH
Q 002100 319 KMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVMLIEYGLEEAAYLLVA 379 (967)
Q Consensus 319 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~ 379 (967)
|++ .++.+++.+++.+|++|+++.|++.|+++|.+.++ .+||+.++.+|..|++++|++
T Consensus 87 ~~~-~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~l~~A~~~~~~~Lk~ 145 (145)
T 4eoz_A 87 GKA-PNLDKMADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKT 145 (145)
T ss_dssp SCC-TTGGGTHHHHHHHHHHTTCHHHHHHHHCC----------------------------
T ss_pred Ccc-CCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCHHHhcC
Confidence 999 79999999999999999999999999999999999 999999999999999999874
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-21 Score=228.14 Aligned_cols=362 Identities=9% Similarity=-0.015 Sum_probs=273.6
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHH-HHHHhcCHHHHHH----H
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAW-ISIALEDYDGALR----D 608 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~-~~~~~g~~~~A~~----~ 608 (967)
+.++|...|+++++.+|++...|..++..+...|++++|+..|++++...|+.+.+..++. +....|++++|.+ .
T Consensus 27 ~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~ 106 (530)
T 2ooe_A 27 PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQA 106 (530)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 4489999999999999999999999999999999999999999999999998778888775 4456788887765 7
Q ss_pred HHHHHHh---CCCchHHhhhhhhhhhHhhhHH---------HhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC
Q 002100 609 VRALLTL---DPSYMMFYGQLHGDNLVETLQP---------LVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG 676 (967)
Q Consensus 609 ~~~al~l---~p~~~~~~~~~~~~~~~~~l~~---------~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~ 676 (967)
|++++.. +|+....|. ....+.. ..++++.| ...|+++++ .|.
T Consensus 107 ~~~al~~~g~~~~~~~~w~------~~~~~~~~~~~~~~~~~~~~~~~a------------------~~~y~~al~-~P~ 161 (530)
T 2ooe_A 107 YDFALDKIGMEIMSYQIWV------DYINFLKGVEAVGSYAENQRITAV------------------RRVYQRGCV-NPM 161 (530)
T ss_dssp HHHHHHHTTTSTTCHHHHH------HHHHHHHHSCCCSSTTHHHHHHHH------------------HHHHHHHTT-SCC
T ss_pred HHHHHHHCCCCcccHHHHH------HHHHHHhcCCCcccHHHHhHHHHH------------------HHHHHHHHh-chh
Confidence 7777764 455555552 1122222 14566666 888999998 565
Q ss_pred ChH--HHHHHHHH-------------HHHhcCHHHHHHHHHH------HHhc-----CCch-------hHHHHHHHHHHH
Q 002100 677 KSL--LRFRQSLL-------------LLRLNSQKAAMRSLRL------ARNY-----STSE-------HEKLVYEGWILY 723 (967)
Q Consensus 677 ~~~--~~~~~g~~-------------~~~~g~~~~A~~~l~~------al~~-----~p~~-------~~a~~~lg~~~~ 723 (967)
... .+...... ....+++..|...++. .++. .|.. ...|... +.+
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~--~~~ 239 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY--IQW 239 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH--HHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH--HHH
Confidence 432 22211111 1134567777766654 3332 2321 1223222 222
Q ss_pred Hc------CCh----HHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhH
Q 002100 724 DT------GHR----EEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLG 793 (967)
Q Consensus 724 ~~------g~~----~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg 793 (967)
.. ++. ++++..|++++..+|.+. .+|..+|
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~----------------------------------------~~w~~~~ 279 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP----------------------------------------DIWYEAA 279 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCH----------------------------------------HHHHHHH
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhCCCCH----------------------------------------HHHHHHH
Confidence 22 222 366777888887777555 7889999
Q ss_pred HHHHh-------cccHH-------HHHHHHHHHhc---cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCH-HHH
Q 002100 794 SVYVD-------CEKLD-------LAADCYMNALN---IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNA-SAY 855 (967)
Q Consensus 794 ~~~~~-------~g~~~-------~A~~~~~~Al~---~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~ 855 (967)
..+.. .|+++ +|+..|++|++ ++...+|..+|.++...|++++|...|+++++..|.++ .+|
T Consensus 280 ~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 359 (530)
T 2ooe_A 280 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY 359 (530)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHH
T ss_pred HHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHH
Confidence 88875 78887 99999999996 44556999999999999999999999999999999885 588
Q ss_pred HHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcC
Q 002100 856 EKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAV-LMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMG 929 (967)
Q Consensus 856 ~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~-~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g 929 (967)
...+.. ++.++|...|++|++..|.....+...+.+ +...|++++|...|+++++..|+ +.++..++.++...|
T Consensus 360 ~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 360 IQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 439 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC
Confidence 888753 889999999999999999888777777765 34689999999999999999998 568999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCchh----HHHHHHHHHhhh
Q 002100 930 DHLHTQRDCEAALCLDPNHTD----TLELYDKATERV 962 (967)
Q Consensus 930 ~~~~A~~~~~~al~~~P~~~~----~l~l~~r~~~~~ 962 (967)
+.++|...|++++...|.+++ ++..+.+.+...
T Consensus 440 ~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 440 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999887765 666555555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.3e-23 Score=225.27 Aligned_cols=279 Identities=14% Similarity=0.066 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchh--HHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhc
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIY--SLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLY 532 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~--a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y 532 (967)
.....++.+|..++..|++++|+..|+++++.+|.. ++..++. ++...+.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~---------------------------~~~~~~~~ 71 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGL---------------------------TQAENEKD 71 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH---------------------------HHHHTTCH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH---------------------------HHHHcCCH
Confidence 345568899999999999999999999999997743 3444444 44444444
Q ss_pred CChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHH--------------HH-HH
Q 002100 533 CSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELR--------------AW-IS 596 (967)
Q Consensus 533 ~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~l--------------a~-~~ 596 (967)
++|+..++++++++|++..++..+|.++...|++++|+..|++++..+| +...+..+ +. ++
T Consensus 72 ---~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (327)
T 3cv0_A 72 ---GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFF 148 (327)
T ss_dssp ---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCT
T ss_pred ---HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHH
Confidence 8999999999999999999999999999999999999999999999999 66666665 66 68
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC
Q 002100 597 IALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG 676 (967)
Q Consensus 597 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~ 676 (967)
...|++++|+..++++++.+|++...+ ..++.++...+++++| +..+.++++.+|.
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~la~~~~~~~~~~~A------------------~~~~~~~~~~~~~ 204 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMNPNDAQLH------ASLGVLYNLSNNYDSA------------------AANLRRAVELRPD 204 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHSTTCHHHH------HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTT
T ss_pred HHcccHHHHHHHHHHHHhhCCCCHHHH------HHHHHHHHHhccHHHH------------------HHHHHHHHHhCCC
Confidence 899999999999999999999998888 7789999999999999 9999999999999
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhh
Q 002100 677 KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALA 756 (967)
Q Consensus 677 ~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la 756 (967)
++..+..+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..+++++.+.|+...
T Consensus 205 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--------- 275 (327)
T 3cv0_A 205 DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTT--------- 275 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999885210
Q ss_pred hcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc
Q 002100 757 DSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI 815 (967)
Q Consensus 757 ~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~ 815 (967)
. .. .........++..+|.++...|++++|...++++++.
T Consensus 276 ----~-~~--------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 276 ----P-TG--------------EASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp ------------------------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred ----c-cc--------------cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 0 00 0000013378999999999999999999999887763
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=221.78 Aligned_cols=248 Identities=15% Similarity=0.128 Sum_probs=220.9
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhh
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALAD 757 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~ 757 (967)
+..++..|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++ .|.+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~----------- 70 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNAT----------- 70 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTT-----------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCch-----------
Confidence 456788999999999999999999999999999999999999999999999999999999998 33221
Q ss_pred cCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHH
Q 002100 758 SSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRK 835 (967)
Q Consensus 758 ~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~ 835 (967)
.....++..+|.++...|++++|+.+|+++++. +...++..+|.++..+|+++
T Consensus 71 -------------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 71 -------------------------KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP 125 (272)
T ss_dssp -------------------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH
T ss_pred -------------------------hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHH
Confidence 123467999999999999999999999999994 44569999999999999999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHH-cc---CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC---HHHHHHHHHHH
Q 002100 836 AAYDEMTKLIEKARNNASAYEKRS-EY---CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK---EAEAIAELSRA 908 (967)
Q Consensus 836 ~A~~~~~~al~~~p~~~~~~~~~~-~~---~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~---~~eAi~~~~ka 908 (967)
+|+..|+++++.+|++..++..+| .. +++++|+..|+++++++|++..++..+|.++...++ +++|+..|+++
T Consensus 126 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 999999999999999999999999 43 899999999999999999999999999999999998 99999999999
Q ss_pred HhcC---CCh------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 909 IAFK---PDL------QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 909 l~~~---p~~------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
++.. |++ .++..+|.+|..+|++++|+..|+++++++|+++.+.+.+.++....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 9876 542 47888999999999999999999999999999999999888877654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-22 Score=233.18 Aligned_cols=381 Identities=13% Similarity=0.055 Sum_probs=279.9
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHH
Q 002100 461 HQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMM 540 (967)
Q Consensus 461 ~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~ 540 (967)
..+|..+++.|++++|+.+|+++.+.++..+...++.++ ...+.+.+.++|+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y---------------------------~~~g~~~d~~~A~~ 59 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQ---------------------------VGTRDPAQIKQAEA 59 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------------------HccCCCCCHHHHHH
Confidence 457889999999999999999999887766666655544 33333334588899
Q ss_pred HHHHhHhhCCCCchhHHHHHHHHHhcC-----cHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 541 DLNTATELDPTLSYPYKYRAILLVEEN-----KLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 541 ~~~~al~l~P~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
.|+++++. ++.+++.+|.++...+ ++++|+..|+++++.. ++.+++.+|.+|...+..+++...++.....
T Consensus 60 ~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a 135 (452)
T 3e4b_A 60 TYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG-EGNTLIPLAMLYLQYPHSFPNVNAQQQISQW 135 (452)
T ss_dssp --------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT-CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHH
T ss_pred HHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 99999866 7788999999777766 8899999999998844 4558999999999888766554444333332
Q ss_pred -CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc--
Q 002100 616 -DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLN-- 692 (967)
Q Consensus 616 -~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g-- 692 (967)
.+.++.+. +.++.++...+.++++. ..+...+..+...+|. +++.+|.+|...|
T Consensus 136 ~~~g~~~a~------~~Lg~~y~~~~~~~~~~--------------~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~ 192 (452)
T 3e4b_A 136 QAAGYPEAG------LAQVLLYRTQGTYDQHL--------------DDVERICKAALNTTDI---CYVELATVYQKKQQP 192 (452)
T ss_dssp HHHTCTTHH------HHHHHHHHHHTCGGGGH--------------HHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCH
T ss_pred HHCCCHHHH------HHHHHHHHcCCCcccCH--------------HHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCc
Confidence 23344555 67788898888887772 1123444555554444 8999999999999
Q ss_pred -CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHc----CChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHH
Q 002100 693 -SQKAAMRSLRLARNYSTSEHEKLVYEGWILYDT----GHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAY 767 (967)
Q Consensus 693 -~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~ 767 (967)
++++|+..|+++.+..|.....++.+|.+|... +++++|+.+|+++. |.+.
T Consensus 193 ~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~--------------------- 248 (452)
T 3e4b_A 193 EQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP--------------------- 248 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST---------------------
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH---------------------
Confidence 999999999999999999998889999999765 79999999999988 5444
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHhHHH-H--HhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC-----CHHHHHH
Q 002100 768 VIQLLEEALRCPSDGLRKGQALNNLGSV-Y--VDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKN-----QRKAAYD 839 (967)
Q Consensus 768 a~~~le~~~~~~~~~~~~~~a~~~lg~~-~--~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g-----~~~~A~~ 839 (967)
.+++++|.+ + ...+++++|+.+|+++.+.++..++++||.+|. .| ++++|+.
T Consensus 249 -------------------~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 249 -------------------ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp -------------------HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred -------------------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 789999998 4 578999999999999999999999999999998 66 9999999
Q ss_pred HHHHHHHHccCCHHHHHHHHcc--------CChHHHHHHHHHhhccCCCCchHHHHHHHHHHh----CCCHHHHHHHHHH
Q 002100 840 EMTKLIEKARNNASAYEKRSEY--------CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMD----DHKEAEAIAELSR 907 (967)
Q Consensus 840 ~~~~al~~~p~~~~~~~~~~~~--------~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~----~g~~~eAi~~~~k 907 (967)
+|+++. +.++.+++.+|.. .++++|+..|+++.+ +.++.+.+++|.+|.. ..++.+|+.+|++
T Consensus 309 ~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 309 HFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 999999 8899999999842 389999999999987 4568899999999885 4689999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHc--CChHHHHHHHHHHHhcC
Q 002100 908 AIAFKPDLQLLHLRAAFHDSM--GDHLHTQRDCEAALCLD 945 (967)
Q Consensus 908 al~~~p~~~~~~~~a~~~~~~--g~~~~A~~~~~~al~~~ 945 (967)
+.+..+. .+...++.+...+ ++..+|....++.....
T Consensus 384 A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 384 AKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 9987653 3455555554433 35667777766655543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-22 Score=208.52 Aligned_cols=199 Identities=19% Similarity=0.135 Sum_probs=176.8
Q ss_pred CCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhh
Q 002100 550 PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHG 628 (967)
Q Consensus 550 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 628 (967)
|+++.+++.+|.++...|++++|+..|+++++.+| ++.++..+|.++..+|++++|+..|+++++++|++..++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~----- 76 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGY----- 76 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH-----
Confidence 78899999999999999999999999999999999 999999999999999999999999999999999999998
Q ss_pred hhhHhhhHHHh-----------hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHH
Q 002100 629 DNLVETLQPLV-----------QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAA 697 (967)
Q Consensus 629 ~~~~~~l~~~~-----------~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A 697 (967)
..++.++... +++++| +..+.++++.+|+++.+++.+|.++..+|++++|
T Consensus 77 -~~lg~~~~~~~~~~~~~~~~~g~~~~A------------------~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 77 -MVLSEAYVALYRQAEDRERGKGYLEQA------------------LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp -HHHHHHHHHHHHTCSSHHHHHHHHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred -HHHHHHHHHhhhhhhhhcccccCHHHH------------------HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Confidence 7889999999 999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhc
Q 002100 698 MRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALR 777 (967)
Q Consensus 698 ~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~ 777 (967)
+..|+++++.+ +++.++..+|.++...|++++|+..|+++++++|++.
T Consensus 138 ~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~------------------------------- 185 (217)
T 2pl2_A 138 EASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL------------------------------- 185 (217)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH-------------------------------
T ss_pred HHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-------------------------------
Confidence 99999999999 9999999999999999999999999999999999776
Q ss_pred CCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHh
Q 002100 778 CPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNAL 813 (967)
Q Consensus 778 ~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 813 (967)
.++.++|.++...|++++|+..|+++-
T Consensus 186 ---------~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 186 ---------DLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp ---------HHHHHHHHHHTC---------------
T ss_pred ---------HHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 789999999999999999999998764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-22 Score=214.72 Aligned_cols=248 Identities=14% Similarity=0.063 Sum_probs=208.8
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhh
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDN 630 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 630 (967)
++..++.+|.+++..|++++|+..|+++++.+| ++.++..+|.++...|++++|+..++++++ .|+++.... .+..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~--~~~~ 78 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKS--ADFE 78 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCH--HHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHH--HHHH
Confidence 345678889999999999999999999999999 788899999999999999999999999998 454444310 0116
Q ss_pred hHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 002100 631 LVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS 710 (967)
Q Consensus 631 ~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~ 710 (967)
.++.++...+++++| +..+.++++.+|.++.++..+|.++...|++++|+..|+++++.+|.
T Consensus 79 ~lg~~~~~~~~~~~A------------------~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 140 (272)
T 3u4t_A 79 YYGKILMKKGQDSLA------------------IQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140 (272)
T ss_dssp HHHHHHHHTTCHHHH------------------HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC
T ss_pred HHHHHHHHcccHHHH------------------HHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC
Confidence 778888888888888 88899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHH
Q 002100 711 EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALN 790 (967)
Q Consensus 711 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~ 790 (967)
++.++..+|...+..+++++|+..|+++++++|++. .++.
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----------------------------------------~~~~ 180 (272)
T 3u4t_A 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY----------------------------------------IGYL 180 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----------------------------------------HHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccch----------------------------------------HHHH
Confidence 999999999555556799999999999999988655 6888
Q ss_pred HhHHHHHhccc---HHHHHHHHHHHhccC---cH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHH
Q 002100 791 NLGSVYVDCEK---LDLAADCYMNALNIK---HT-------RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEK 857 (967)
Q Consensus 791 ~lg~~~~~~g~---~~~A~~~~~~Al~~~---~~-------~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 857 (967)
.+|.++...++ +++|+..|+++++.. +. .++..+|.+|...|++++|++.|+++++.+|+++.++..
T Consensus 181 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 260 (272)
T 3u4t_A 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDG 260 (272)
T ss_dssp HHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHH
Confidence 88999998888 888999999998732 22 478889999999999999999999999999999988877
Q ss_pred HHc
Q 002100 858 RSE 860 (967)
Q Consensus 858 ~~~ 860 (967)
++.
T Consensus 261 l~~ 263 (272)
T 3u4t_A 261 LKM 263 (272)
T ss_dssp HC-
T ss_pred hhh
Confidence 764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-22 Score=212.89 Aligned_cols=242 Identities=17% Similarity=0.155 Sum_probs=220.8
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhh
Q 002100 677 KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALA 756 (967)
Q Consensus 677 ~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la 756 (967)
.+..+..+|.++...|++++|+..|+++++.+ .++.++..+|.++...|++++|+..++++++++|+..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------- 72 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR---------- 72 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc----------
Confidence 35678899999999999999999999999999 8899999999999999999999999999999888431
Q ss_pred hcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHH
Q 002100 757 DSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKA 836 (967)
Q Consensus 757 ~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~ 836 (967)
.+.+....++..+|.++...|++++|+.+|+++++..+. +.++...|++++
T Consensus 73 -----------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~~~~~ 123 (258)
T 3uq3_A 73 -----------------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT------ADILTKLRNAEK 123 (258)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHHH
T ss_pred -----------------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch------hHHHHHHhHHHH
Confidence 000112478999999999999999999999999996654 567888899999
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 002100 837 AYDEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFK 912 (967)
Q Consensus 837 A~~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~ 912 (967)
|+..+++++..+|+++.++..+|.. +++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++..
T Consensus 124 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999953 999999999999999999999999999999999999999999999999999
Q ss_pred CC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCchhHHHHHHHH
Q 002100 913 PD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLD------PNHTDTLELYDKA 958 (967)
Q Consensus 913 p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------P~~~~~l~l~~r~ 958 (967)
|+ ..++..+|.++..+|++++|+..|+++++++ |++.++...+.++
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 99 5689999999999999999999999999999 9999998888765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-21 Score=223.72 Aligned_cols=356 Identities=13% Similarity=-0.001 Sum_probs=268.8
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcH---HHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKL---AAAITEINRIIGFKVSPDCLELRAWISIAL 599 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~la~~~~~~ 599 (967)
+..+...+++ ++|+..|+++.+. +++.+++.+|.+|...|++ ++|+..|+++++. ++.+++.+|.++...
T Consensus 10 a~~~~~~g~~---~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDT---VTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHH--TCCTGGGTCC------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCH---HHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhC
Confidence 5566667766 9999999999775 5788999999999999999 9999999999977 788899999977666
Q ss_pred c-----CHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcC
Q 002100 600 E-----DYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAND 674 (967)
Q Consensus 600 g-----~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~ 674 (967)
+ ++++|+..|+++++..+ +.++ +.++.+|...+...++ ..++..+.++.+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~--~~A~------~~Lg~~y~~~~~~~~~---------------~~a~~~~~~a~~~- 138 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE--GNTL------IPLAMLYLQYPHSFPN---------------VNAQQQISQWQAA- 138 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC--SSCH------HHHHHHHHHCGGGCTT---------------CCHHHHHHHHHHH-
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC--HHHH------HHHHHHHHhCCCCCCC---------------HHHHHHHHHHHHC-
Confidence 5 89999999999998544 3455 6678888876665554 4456677666543
Q ss_pred CCChHHHHHHHHHHHHhcCHH----HHHHHHHHHHhcCCchhHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcccchHH
Q 002100 675 PGKSLLRFRQSLLLLRLNSQK----AAMRSLRLARNYSTSEHEKLVYEGWILYDTG---HREEALAKAEESISIQRSFEA 747 (967)
Q Consensus 675 p~~~~~~~~~g~~~~~~g~~~----~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g---~~~eA~~~~~~al~~~p~~~~ 747 (967)
.++.+.+.+|.+|...+.++ .|...++.+...+|. +++.+|.+|...| ++++|+..|+++.+..+...
T Consensus 139 -g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a- 213 (452)
T 3e4b_A 139 -GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA- 213 (452)
T ss_dssp -TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH-
T ss_pred -CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH-
Confidence 45778999999999998554 444455555555554 9999999999999 99999999999998888544
Q ss_pred HHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc----ccHHHHHHHHHHHhccCcHHHHHH
Q 002100 748 FFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC----EKLDLAADCYMNALNIKHTRAHQG 823 (967)
Q Consensus 748 ~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~----g~~~~A~~~~~~Al~~~~~~a~~~ 823 (967)
..++++|.+|... +++++|+.+|+++. +++..++++
T Consensus 214 ---------------------------------------~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~ 253 (452)
T 3e4b_A 214 ---------------------------------------QRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVS 253 (452)
T ss_dssp ---------------------------------------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHH
Confidence 6678999999776 79999999999999 888999999
Q ss_pred HHHH-H--HHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc---C-----ChHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 002100 824 LARV-Y--HLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY---C-----DRDMAKSDLSMATQLDPMRTYPYRYRAAVL 892 (967)
Q Consensus 824 la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~---~-----~~~~A~~~l~~al~l~p~~~~~~~~la~~~ 892 (967)
||.+ + ...+++++|+.+|+++.+. .++.+++.+|.. | ++++|+..|+++. |.++.+++++|.+|
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIY 328 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 9999 4 5789999999999999865 478898888843 4 9999999999999 89999999999999
Q ss_pred Hh----CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 893 MD----DHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDS----MGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 893 ~~----~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
.. ..++++|+.+|+++.+.. .+.+.+.+|.+|.. ..|+++|..+|++|.+.. +++....+..+...+
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g--~~~a~~~l~~l~~~~ 403 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARNG-QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLEAPL 403 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTTT-CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC--CHHHHHHHHHHHTTC
T ss_pred HCCCCCCcCHHHHHHHHHHHHhhC-hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhC
Confidence 87 459999999999999854 35688899999985 569999999999998864 455666666665443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-21 Score=210.35 Aligned_cols=260 Identities=12% Similarity=0.023 Sum_probs=224.8
Q ss_pred HHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHH
Q 002100 636 QPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS-LLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEK 714 (967)
Q Consensus 636 ~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~-~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a 714 (967)
....|+|.+| +..+++....+|.+. .....++.+|+.+|+++.|+..++. .+|....+
T Consensus 9 ~~~~g~y~~a------------------i~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a 67 (291)
T 3mkr_A 9 AFYIGSYQQC------------------INEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQA 67 (291)
T ss_dssp HHHTTCHHHH------------------HHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHH
T ss_pred HHHHHHHHHH------------------HHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHH
Confidence 4556777777 777777777777763 4667788999999999999987765 36667788
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhc--ccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHh
Q 002100 715 LVYEGWILYDTGHREEALAKAEESISI--QRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNL 792 (967)
Q Consensus 715 ~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~l 792 (967)
+..++..+...+++++|++.+++.+.. +|++. .+++.+
T Consensus 68 ~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~----------------------------------------~~~~~l 107 (291)
T 3mkr_A 68 VRMFAEYLASHSRRDAIVAELDREMSRSVDVTNT----------------------------------------TFLLMA 107 (291)
T ss_dssp HHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCH----------------------------------------HHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCH----------------------------------------HHHHHH
Confidence 888999999999999999999998865 47555 789999
Q ss_pred HHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH-----c-cCChHH
Q 002100 793 GSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS-----E-YCDRDM 866 (967)
Q Consensus 793 g~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-----~-~~~~~~ 866 (967)
|.++...|++++|+..|++ ++...++..+|.++..+|++++|++.|+++++.+|++.......+ . .+++++
T Consensus 108 a~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~e 184 (291)
T 3mkr_A 108 ASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184 (291)
T ss_dssp HHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHH
Confidence 9999999999999999998 677789999999999999999999999999999999864433322 1 278999
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHH-HHHHHHHHHhc
Q 002100 867 AKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLH-TQRDCEAALCL 944 (967)
Q Consensus 867 A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~-A~~~~~~al~~ 944 (967)
|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++.+|+ ++++.++|.++..+|++++ +.+++++++++
T Consensus 185 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998 5699999999999999976 57899999999
Q ss_pred CCCchhHHHHHHHHH
Q 002100 945 DPNHTDTLELYDKAT 959 (967)
Q Consensus 945 ~P~~~~~l~l~~r~~ 959 (967)
+|+|+.+.++..+..
T Consensus 265 ~P~~~~~~d~~~~~~ 279 (291)
T 3mkr_A 265 HRSHPFIKEYRAKEN 279 (291)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHH
Confidence 999999998766543
|
| >2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-23 Score=192.22 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=100.2
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR 317 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y 317 (967)
+.+++...+.++++++.+|||+|+|+|++|+|||.||+++|+||++||.++|.|+...+|++++ +++++|+.+|+|+|
T Consensus 8 h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~--~~~~~f~~ll~~~Y 85 (120)
T 2if5_A 8 HSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDF--VSAEALTALMDFAY 85 (120)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCS--SCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCC--CCHHHHHHHHHHHc
Confidence 4455566677888899999999999999999999999999999999999999999999999977 99999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHH
Q 002100 318 TKMLDSFDPRLVLELLSFANRFCCEELKSACDSYL 352 (967)
Q Consensus 318 t~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l 352 (967)
||++ .++.+++.+++.+|++|+++.|++.|+++|
T Consensus 86 t~~~-~~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 86 TATL-TVSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HSCC-CCCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 9999 899999999999999999999999999987
|
| >2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-22 Score=185.68 Aligned_cols=104 Identities=19% Similarity=0.364 Sum_probs=92.9
Q ss_pred ccCCCCcccEEEEEcC----eEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCC
Q 002100 249 CSTSDEDWDMSFCIGN----DEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSF 324 (967)
Q Consensus 249 ~~~~~~~~Dv~~~v~~----~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~ 324 (967)
+++++.+|||+|+|+| ++|+|||.||+++|+||++||.++|.|+. .+|++++ +++++|+.+|+|+|||++ .+
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~--~~~~~f~~~l~~iYt~~~-~~ 77 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPD--VEPAAFLILLKYMYSDEI-DL 77 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETT--SCHHHHHHHHHHHHHCCC-CC
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCC--CCHHHHHHHHHHHcCCCc-cC
Confidence 4567899999999988 99999999999999999999999999998 9999977 999999999999999999 89
Q ss_pred CHHHHHHHHHHhchhChHHHHHHHHHHHHhhC
Q 002100 325 DPRLVLELLSFANRFCCEELKSACDSYLASMV 356 (967)
Q Consensus 325 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~ 356 (967)
+.+++.+++.+|++|+++.|++.|+++|.+.+
T Consensus 78 ~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 78 EADTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999998764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-21 Score=203.55 Aligned_cols=235 Identities=11% Similarity=0.075 Sum_probs=212.6
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-------hHHhh
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSY-------MMFYG 624 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~-------~~~~~ 624 (967)
.+..+..+|.+++..|++++|+..|+++++.++++.++..+|.++...|++++|+..++++++++|++ ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~- 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF- 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH-
Confidence 45678999999999999999999999999988778999999999999999999999999999998876 3455
Q ss_pred hhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 625 QLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLA 704 (967)
Q Consensus 625 ~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~a 704 (967)
..++.++...+++++| +..+.++++.+|. +.++...|++++|+..++++
T Consensus 83 -----~~l~~~~~~~~~~~~A------------------~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~ 131 (258)
T 3uq3_A 83 -----ARIGNAYHKLGDLKKT------------------IEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAE 131 (258)
T ss_dssp -----HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHcccHHHH------------------HHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHH
Confidence 7789999999999999 8999999999887 56788889999999999999
Q ss_pred HhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCc
Q 002100 705 RNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLR 784 (967)
Q Consensus 705 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~ 784 (967)
+..+|.++.++..+|.++...|++++|+..++++++.+|+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------------------------------- 173 (258)
T 3uq3_A 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA-------------------------------------- 173 (258)
T ss_dssp HHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------------------------------------
T ss_pred HHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH--------------------------------------
Confidence 999999999999999999999999999999999999988655
Q ss_pred hHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc------cCCHHHHH
Q 002100 785 KGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKA------RNNASAYE 856 (967)
Q Consensus 785 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~ 856 (967)
.++.++|.++...|++++|+.+|+++++. +...++..+|.++..+|++++|+..|+++++.. |++..++.
T Consensus 174 --~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~ 251 (258)
T 3uq3_A 174 --RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQ 251 (258)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHH
Confidence 78999999999999999999999999984 445689999999999999999999999999999 66655554
Q ss_pred HH
Q 002100 857 KR 858 (967)
Q Consensus 857 ~~ 858 (967)
.+
T Consensus 252 ~l 253 (258)
T 3uq3_A 252 LY 253 (258)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=201.46 Aligned_cols=197 Identities=17% Similarity=0.142 Sum_probs=144.6
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 675 PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 675 p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
|.++..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-------- 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL-------- 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--------
Confidence 778889999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc-----------ccHHHHHHHHHHHhccC--cHHHH
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC-----------EKLDLAADCYMNALNIK--HTRAH 821 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~-----------g~~~~A~~~~~~Al~~~--~~~a~ 821 (967)
.++.++|.++... |++++|+..|+++++.+ ...++
T Consensus 74 --------------------------------~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 121 (217)
T 2pl2_A 74 --------------------------------GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121 (217)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred --------------------------------HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHH
Confidence 7899999999988 77777777777777633 34467
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHH
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEA 901 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA 901 (967)
..+|.++..+|++++|+..|+++++.+ + ++.++.++|.+|...|++++|
T Consensus 122 ~~lg~~~~~~g~~~~A~~~~~~al~~~-~------------------------------~~~~~~~la~~~~~~g~~~~A 170 (217)
T 2pl2_A 122 LQRGLVYALLGERDKAEASLKQALALE-D------------------------------TPEIRSALAELYLSMGRLDEA 170 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-C------------------------------CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcc-c------------------------------chHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777777766666655 4 445556666666666666666
Q ss_pred HHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 902 IAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAAL 942 (967)
Q Consensus 902 i~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al 942 (967)
+..|+++++.+|+ ..++..+|.++..+|++++|+..|+++-
T Consensus 171 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 171 LAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 6666666666666 3466666666666666666666666553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=223.18 Aligned_cols=300 Identities=13% Similarity=0.097 Sum_probs=235.2
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCch
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S----PDCLELRAWISIALEDYDGALRDVRALLTLD------PSYM 620 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~------p~~~ 620 (967)
....++.+|..+...|++++|+..|++++...| + ..++..+|.++...|++++|+..+++++.+. |...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 345677788888888888888888888888877 4 3577788888888888888888888887762 2222
Q ss_pred HHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCC------hHHHHHHHHHHHHhcC-
Q 002100 621 MFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGK------SLLRFRQSLLLLRLNS- 693 (967)
Q Consensus 621 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~------~~~~~~~g~~~~~~g~- 693 (967)
.++ ..++.++...+++++| +..+.++++..|.. ...+..+|.++...|+
T Consensus 88 ~~~------~~la~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 143 (406)
T 3sf4_A 88 KAS------GNLGNTLKVLGNFDEA------------------IVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 143 (406)
T ss_dssp HHH------HHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCc
Confidence 233 6677788888888888 67777777665543 3478889999999999
Q ss_pred -------------------HHHHHHHHHHHHhc------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHH
Q 002100 694 -------------------QKAAMRSLRLARNY------STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAF 748 (967)
Q Consensus 694 -------------------~~~A~~~l~~al~~------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 748 (967)
+++|+..+++++.. .|....++..+|.++...|++++|+..+++++++.+...
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-- 221 (406)
T 3sf4_A 144 FGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-- 221 (406)
T ss_dssp CC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT--
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC--
Confidence 99999999999876 444567899999999999999999999999998776322
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--------HHH
Q 002100 749 FLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH--------TRA 820 (967)
Q Consensus 749 ~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--------~~a 820 (967)
+......++.++|.+|...|++++|+.+|+++++..+ ..+
T Consensus 222 --------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 269 (406)
T 3sf4_A 222 --------------------------------DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 269 (406)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------------------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHH
Confidence 0112235889999999999999999999999997322 238
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHH
Q 002100 821 HQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE 900 (967)
Q Consensus 821 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 900 (967)
+..+|.++..+|++++|+..++++++..+... ..+....++..+|.+|...|++++
T Consensus 270 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~------------------------~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 270 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN------------------------DRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------------------CHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC------------------------CcHHHHHHHHHHHHHHHHcCCHHH
Confidence 88999999999999999999999998766321 011224577889999999999999
Q ss_pred HHHHHHHHHhcCCC-------hHHHHHHHHHHHHcCChHH
Q 002100 901 AIAELSRAIAFKPD-------LQLLHLRAAFHDSMGDHLH 933 (967)
Q Consensus 901 Ai~~~~kal~~~p~-------~~~~~~~a~~~~~~g~~~~ 933 (967)
|+..|++++++.+. ..++..+|.++..+|+...
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99999999987433 2378889999999998744
|
| >1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-22 Score=190.20 Aligned_cols=114 Identities=13% Similarity=0.234 Sum_probs=105.0
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEe-ccCCCCHHHHHHHHHhH
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNF-SQNGISVEAMRAAEEFS 316 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~-~~~~~~~~~~~~~l~~~ 316 (967)
+...+...+.++++++.+|||+|+|+|++|+|||+|||++|+||++||.++|.| ...+|+| ++ +++++|+.+|+|+
T Consensus 12 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~--~~~~~f~~ll~~~ 88 (127)
T 1r29_A 12 HASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPE--INPEGFNILLDFM 88 (127)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTT--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCC--CCHHHHHHHHHHH
Confidence 344555667778889999999999999999999999999999999999999999 7789999 66 9999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhh
Q 002100 317 RTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASM 355 (967)
Q Consensus 317 Yt~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 355 (967)
|||++ .++.+++.+++.+|++|+++.|++.|+++|.+.
T Consensus 89 Ytg~~-~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 89 YTSRL-NLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp HHSCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred cCCCc-CcCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999 899999999999999999999999999999753
|
| >2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-22 Score=193.49 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=98.9
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCC--CccceEEeccCCCCHHHHHHHHHh
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIE--SRREKVNFSQNGISVEAMRAAEEF 315 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e--~~~~~i~~~~~~~~~~~~~~~l~~ 315 (967)
+...+...+.++++++.+|||+|+|+|++|+|||+|||++|+||++||.++|.| +...+|.|++ +++++|+.+|+|
T Consensus 30 h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~--v~~~~f~~lL~f 107 (144)
T 2ppi_A 30 HAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEG--ISVMVMREILDY 107 (144)
T ss_dssp HHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCS--SCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCC--CCHHHHHHHHHH
Confidence 344555667788899999999999999999999999999999999999998876 6677999976 999999999999
Q ss_pred HcCCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHH
Q 002100 316 SRTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLA 353 (967)
Q Consensus 316 ~Yt~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~ 353 (967)
+|||++ .++.+++.+|+.+|++|+++.|++.|+++|.
T Consensus 108 iYtg~~-~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~ 144 (144)
T 2ppi_A 108 IFSGQI-RLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144 (144)
T ss_dssp HTTSCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred HhCCCC-CCCHHHHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence 999999 8999999999999999999999999998863
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-21 Score=218.08 Aligned_cols=306 Identities=13% Similarity=0.030 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCch------hHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHH
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHI------YSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQE 528 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~------~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~ 528 (967)
..+.+++.+|..++..|+|++|+.+|+++++..|. .++..++.++...|++.+|...+++++......+
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----- 81 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG----- 81 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-----
Confidence 34667889999999999999999999999999663 3445566666666666555555544433211100
Q ss_pred HhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C------hhHHHHHHHHHHHhcC
Q 002100 529 RSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S------PDCLELRAWISIALED 601 (967)
Q Consensus 529 ~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~------~~~~~~la~~~~~~g~ 601 (967)
..|....++..+|.++...|++++|+..+++++.+.| . ..++..+|.+|...|+
T Consensus 82 -------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 82 -------------------DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 0234466788999999999999999999999998876 2 4589999999999999
Q ss_pred --------------------HHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhcccccc
Q 002100 602 --------------------YDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDI 661 (967)
Q Consensus 602 --------------------~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~ 661 (967)
+++|+..+++++.+.+..............++.++...+++++|
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A---------------- 206 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA---------------- 206 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH----------------
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH----------------
Confidence 99999999988876322111111111226677888888888888
Q ss_pred chHHHHHHHHhcCCCChH------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch------hHHHHHHHHHHHHcCChH
Q 002100 662 GSLAVVHHMLANDPGKSL------LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE------HEKLVYEGWILYDTGHRE 729 (967)
Q Consensus 662 ~al~~~~~~l~~~p~~~~------~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~------~~a~~~lg~~~~~~g~~~ 729 (967)
+..+.++++..|.... .+..+|.++...|++++|+..+++++...|.. ..++..+|.++...|+++
T Consensus 207 --~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 284 (406)
T 3sf4_A 207 --VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 284 (406)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred --HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHH
Confidence 7777777766544333 77788888888888888888888888776554 567778888888888888
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHH
Q 002100 730 EALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCY 809 (967)
Q Consensus 730 eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~ 809 (967)
+|+..+++++++.+... +.+....++..+|.+|...|++++|+.+|
T Consensus 285 ~A~~~~~~a~~~~~~~~----------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 285 KAIDYHLKHLAIAQELN----------------------------------DRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC----------------------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888887655221 01122357778888888888888888888
Q ss_pred HHHhcc----Cc----HHHHHHHHHHHHHhCCHHH
Q 002100 810 MNALNI----KH----TRAHQGLARVYHLKNQRKA 836 (967)
Q Consensus 810 ~~Al~~----~~----~~a~~~la~~~~~~g~~~~ 836 (967)
+++++. +. ..++..+|.++...|+...
T Consensus 331 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 331 EKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 888873 11 2367778888888877643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=203.54 Aligned_cols=271 Identities=11% Similarity=0.034 Sum_probs=203.0
Q ss_pred HHHHhcCcHHHHHHHHHHHhccCC-C-hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHH
Q 002100 561 ILLVEENKLAAAITEINRIIGFKV-S-PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPL 638 (967)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~al~~~p-~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~ 638 (967)
...+..|+|++|+..++++...+| + .++...++++|+.+|++++|+..++. .+|....++ ..++..+..
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~------~~la~~~~~ 77 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAV------RMFAEYLAS 77 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHH------HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHH------HHHHHHHcC
Confidence 345667888888888888877777 3 46777788888888888888877655 244444444 556667777
Q ss_pred hhchhhHhhHHHHHhhhccccccchHHHHHHHHhc--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHH
Q 002100 639 VQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN--DPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLV 716 (967)
Q Consensus 639 ~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~ 716 (967)
.+++++| +..+++++.. +|+++.+++.+|.++...|++++|+..|++ |.+.+++.
T Consensus 78 ~~~~~~A------------------~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~ 134 (291)
T 3mkr_A 78 HSRRDAI------------------VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMA 134 (291)
T ss_dssp STTHHHH------------------HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHH
T ss_pred CCcHHHH------------------HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHH
Confidence 7777777 7888887765 588888888888888888888888888877 77888888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHH
Q 002100 717 YEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVY 796 (967)
Q Consensus 717 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~ 796 (967)
.+|.++..+|++++|++.++++++.+|+.... ....+|. .++
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-----------------------------------~l~~a~~---~l~ 176 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQDEDATLT-----------------------------------QLATAWV---SLA 176 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----------------------------------HHHHHHH---HHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHH-----------------------------------HHHHHHH---HHH
Confidence 88888888888888888888888888854300 0001121 233
Q ss_pred HhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHH-HHH
Q 002100 797 VDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDM-AKS 869 (967)
Q Consensus 797 ~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~-A~~ 869 (967)
...|++++|+..|+++++ ++...++.++|.++..+|++++|+..|+++++.+|+++.++..++. .|+.++ +..
T Consensus 177 ~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~ 256 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR 256 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 456888888888888887 4445588888888888888888888888888888888888888883 277755 567
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHH
Q 002100 870 DLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAEL 905 (967)
Q Consensus 870 ~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~ 905 (967)
.++++++++|+++.+.. +..+.+.|++|...|
T Consensus 257 ~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 257 YLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 88888888888887643 456667788877766
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-21 Score=217.56 Aligned_cols=289 Identities=17% Similarity=0.126 Sum_probs=225.7
Q ss_pred CCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-Ch----hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhh
Q 002100 551 TLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SP----DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQ 625 (967)
Q Consensus 551 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~----~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 625 (967)
.....++.+|..+...|++++|+..|++++...| ++ .++..+|.+|...|++++|+..|++++++....
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------ 119 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM------ 119 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc------
Confidence 3445666777777777788888888877777777 43 467777777777777777777777776532110
Q ss_pred hhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002100 626 LHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLAR 705 (967)
Q Consensus 626 ~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al 705 (967)
...|....++..+|.++...|++++|+..|++++
T Consensus 120 ----------------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 153 (411)
T 4a1s_A 120 ----------------------------------------------NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL 153 (411)
T ss_dssp ----------------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------------------------------------cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0023345677889999999999999999999999
Q ss_pred hc------CCchhHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCC
Q 002100 706 NY------STSEHEKLVYEGWILYDTGH-----------------REEALAKAEESISIQRSFEAFFLKAYALADSSLNP 762 (967)
Q Consensus 706 ~~------~p~~~~a~~~lg~~~~~~g~-----------------~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~ 762 (967)
+. .|....++..+|.++...|+ +++|+..+++++++.+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~---------------- 217 (411)
T 4a1s_A 154 TLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG---------------- 217 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT----------------
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC----------------
Confidence 88 56667899999999999999 7888888877775543111
Q ss_pred CchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH--------HHHHHHHHHHHHhCCH
Q 002100 763 ESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT--------RAHQGLARVYHLKNQR 834 (967)
Q Consensus 763 ~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--------~a~~~la~~~~~~g~~ 834 (967)
..+....++.++|.+|...|++++|+.+|+++++..+. .++..+|.++..+|++
T Consensus 218 ------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (411)
T 4a1s_A 218 ------------------DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQF 279 (411)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCH
T ss_pred ------------------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCH
Confidence 11233468999999999999999999999999984322 2889999999999999
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 835 KAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 835 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
++|+..|+++++..+.... .+....++..+|.++...|++++|+.+|+++++..+.
T Consensus 280 ~~A~~~~~~al~~~~~~~~------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 280 EDAAEHYKRTLALAVELGE------------------------REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTC------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC------------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999987763210 0112457788999999999999999999999987554
Q ss_pred h-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 002100 915 L-------QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 915 ~-------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~ 949 (967)
. .++..+|.+|..+|++++|+..|++++++.+...
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 1 3888899999999999999999999999987644
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-21 Score=218.22 Aligned_cols=283 Identities=12% Similarity=0.033 Sum_probs=231.7
Q ss_pred cchhHHHHHhhcCChHHHHHHHHHhHhhCCCCc----hhHHHHHHHHHhcCcHHHHHHHHHHHhcc------CC-ChhHH
Q 002100 521 PVGWMYQERSLYCSGKEKMMDLNTATELDPTLS----YPYKYRAILLVEENKLAAAITEINRIIGF------KV-SPDCL 589 (967)
Q Consensus 521 ~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p-~~~~~ 589 (967)
..|..+...+.| ++|+..|+++++++|++. .++..+|.++...|++++|+..|++++.+ .| ...++
T Consensus 53 ~~g~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 53 LEGERLCNAGDC---RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHTTCH---HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCcH---HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 456666666655 999999999999999986 58999999999999999999999999987 45 67899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHH
Q 002100 590 ELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHH 669 (967)
Q Consensus 590 ~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~ 669 (967)
..+|.+|..+|++++|+..|++++++.+....
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------------------------------------ 161 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGD------------------------------------------------ 161 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC------------------------------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc------------------------------------------------
Confidence 99999999999999999999999875332110
Q ss_pred HHhcCCCChHHHHHHHHHHHHhcC-----------------HHHHHHHHHHHHhcC------CchhHHHHHHHHHHHHcC
Q 002100 670 MLANDPGKSLLRFRQSLLLLRLNS-----------------QKAAMRSLRLARNYS------TSEHEKLVYEGWILYDTG 726 (967)
Q Consensus 670 ~l~~~p~~~~~~~~~g~~~~~~g~-----------------~~~A~~~l~~al~~~------p~~~~a~~~lg~~~~~~g 726 (967)
.|.....+..+|.++...|+ +++|+..++++++.. +....++..+|.++...|
T Consensus 162 ----~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 237 (411)
T 4a1s_A 162 ----RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLG 237 (411)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred ----hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 11223456778888888888 999999999988764 334568999999999999
Q ss_pred ChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHH
Q 002100 727 HREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAA 806 (967)
Q Consensus 727 ~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~ 806 (967)
++++|+..+++++++.+... .......++.++|.+|...|++++|+
T Consensus 238 ~~~~A~~~~~~al~~~~~~~----------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 238 DFQAAIEHHQERLRIAREFG----------------------------------DRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHT----------------------------------CHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcC----------------------------------CcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999998877322 00112358899999999999999999
Q ss_pred HHHHHHhccCc--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccC
Q 002100 807 DCYMNALNIKH--------TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLD 878 (967)
Q Consensus 807 ~~~~~Al~~~~--------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~ 878 (967)
.+|+++++..+ ..++..+|.++..+|++++|+..++++++..+.. ...
T Consensus 284 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------------------~~~ 339 (411)
T 4a1s_A 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL------------------------GDR 339 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------------TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC------------------------CCh
Confidence 99999998433 3488999999999999999999999999876531 011
Q ss_pred CCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH
Q 002100 879 PMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ 916 (967)
Q Consensus 879 p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~ 916 (967)
+....++..+|.+|...|++++|+.+|++++++.+...
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 12345788899999999999999999999999987743
|
| >3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-22 Score=186.97 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=98.4
Q ss_pred ccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
...+...+.++++++.+|||+|+|+|++|+|||.|||++|+||++||.+++ ..+|+|++ +++++|+.+|+|+||
T Consensus 8 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~--~~~~~f~~ll~~iYt 81 (119)
T 3b84_A 8 SVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPA--GFAEIFGLLLDFFYT 81 (119)
T ss_dssp HHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECG--GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCC--CCHHHHHHHHHHHcC
Confidence 344455667778889999999999999999999999999999999999876 56899977 999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhh
Q 002100 319 KMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASM 355 (967)
Q Consensus 319 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 355 (967)
|++ .++.+++.+++.+|++|+++.|++.|+++|.+.
T Consensus 82 g~~-~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 82 GHL-ALTSGNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp SCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred CCC-ccCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 999 899999999999999999999999999998654
|
| >2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-22 Score=192.65 Aligned_cols=119 Identities=14% Similarity=0.185 Sum_probs=107.0
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR 317 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y 317 (967)
+...+...+.++++++.+|||+|+|+|++|+|||+|||++|+||++||.+++.|+ ..|.++ +++++++|+.+|+|+|
T Consensus 19 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~-~~v~~~~~~~lL~~~Y 95 (138)
T 2z8h_A 19 HSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLP-EEVTVKGFEPLIQFAY 95 (138)
T ss_dssp HHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECC-TTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeC-CCCCHHHHHHHHHHhc
Confidence 3445556677788889999999999999999999999999999999999998774 578885 2499999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhh
Q 002100 318 TKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIED 361 (967)
Q Consensus 318 t~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n 361 (967)
||++ .++.+++.+|+.+|++|+++.|++.|+++|.+.++ .+|
T Consensus 96 tg~~-~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~-~sn 137 (138)
T 2z8h_A 96 TAKL-ILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFL-DST 137 (138)
T ss_dssp HSCC-CCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCS-CCC
T ss_pred CCCc-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-ccc
Confidence 9999 89999999999999999999999999999999987 554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-17 Score=203.00 Aligned_cols=373 Identities=12% Similarity=0.011 Sum_probs=266.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhCc-----hhHHHHHHHHHHhcCChHHHHHHHHHHHh-ccCcchhHHHHHhhcCCh
Q 002100 462 QLGVVMLEREEYKDAQNWFKAAVEAGH-----IYSLVGVARTKFKRGHKYSAYKLMNSLIS-DYTPVGWMYQERSLYCSG 535 (967)
Q Consensus 462 ~lG~~~~~~g~y~~A~~~f~~al~~~~-----~~a~~~la~~~~~~g~~~~A~~~l~~~i~-~~~~~g~~~~~~~~y~~~ 535 (967)
.....|...|++.+|++.|++++-.+. ......+++...+. +.....+...++-. ..+..|.++...++|
T Consensus 990 ~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d~~eIA~Iai~lgly--- 1065 (1630)
T 1xi4_A 990 VTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIANIAISNELF--- 1065 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhccHHHHHHHHHhCCCH---
Confidence 466778899999999999999994321 23333355444443 33333333333322 234467777777777
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTL 615 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 615 (967)
++|...|+++- .........+...+++++|++.++++ ..+.+|+.+|..+...|++++|+..|.++
T Consensus 1066 EEAf~IYkKa~-------~~~~A~~VLie~i~nldrAiE~Aerv----n~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1066 EEAFAIFRKFD-------VNTSAVQVLIEHIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHHHHcC-------CHHHHHHHHHHHHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 99999999872 11122333444778888888888765 24788889999999999999999999775
Q ss_pred CCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH
Q 002100 616 DPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQK 695 (967)
Q Consensus 616 ~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~ 695 (967)
+++..+ ...+..+...++|++| +..+..+.+..+. +.+...+|.+|.++++++
T Consensus 1132 --dD~say------~eVa~~~~~lGkyEEA------------------IeyL~mArk~~~e-~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1132 --DDPSSY------MEVVQAANTSGNWEEL------------------VKYLQMARKKARE-SYVETELIFALAKTNRLA 1184 (1630)
T ss_pred --CChHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHhhccc-ccccHHHHHHHHhhcCHH
Confidence 666677 5568888888888888 8888888877643 333445888888888887
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHH
Q 002100 696 AAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEA 775 (967)
Q Consensus 696 ~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~ 775 (967)
+ +..| + ..++ ...+..+|..++..|+|++|...|.++-
T Consensus 1185 e-le~f---I-~~~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA~------------------------------------ 1222 (1630)
T 1xi4_A 1185 E-LEEF---I-NGPN-NAHIQQVGDRCYDEKMYDAAKLLYNNVS------------------------------------ 1222 (1630)
T ss_pred H-HHHH---H-hCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhh------------------------------------
Confidence 4 4433 2 2333 4566678999999999999999888752
Q ss_pred hcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHH
Q 002100 776 LRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAY 855 (967)
Q Consensus 776 ~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 855 (967)
.|..+|.++..+|++++|++++++| +...+|...+.++...|++..|...... +..+|+ .+
T Consensus 1223 ------------ny~rLA~tLvkLge~q~AIEaarKA---~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~d---eL 1283 (1630)
T 1xi4_A 1223 ------------NFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD---EL 1283 (1630)
T ss_pred ------------HHHHHHHHHHHhCCHHHHHHHHHHh---CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHH---HH
Confidence 5677888888888899999888888 4457888888888888888888887764 444443 22
Q ss_pred HHHH----ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCC------hHHHHHHHH
Q 002100 856 EKRS----EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDD--HKEAEAIAELSRAIAFKPD------LQLLHLRAA 923 (967)
Q Consensus 856 ~~~~----~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~--g~~~eAi~~~~kal~~~p~------~~~~~~~a~ 923 (967)
..+. ..|.+++|+..+++++.++|.+...+..+|.+|.+- ++..++++.|...+.+.|- ...|..+..
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHH
Confidence 3333 238888899988888888888888888888777655 6788888888888777662 346777788
Q ss_pred HHHHcCChHHHHHHHHH
Q 002100 924 FHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 924 ~~~~~g~~~~A~~~~~~ 940 (967)
+|.+-|+++.|+..+-+
T Consensus 1364 LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1364 LYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHhcccHHHHHHHHHh
Confidence 88888888888844433
|
| >1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-22 Score=183.75 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=100.2
Q ss_pred ccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
...+...+.++++++.+|||+|+|+|++|+|||.|||++|+||++||.++ ..+|++++ +++++|+.+|+|+||
T Consensus 12 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~--~~~~~f~~ll~~~Yt 84 (121)
T 1buo_A 12 PTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDF--LSPKTFQQILEYAYT 84 (121)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECS--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCC--CCHHHHHHHHHhhcC
Confidence 44555666778888999999999999999999999999999999999874 56799976 999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhC
Q 002100 319 KMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMV 356 (967)
Q Consensus 319 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~ 356 (967)
|++ .++++++.+++.+|++|+++.|++.|+++|.+.|
T Consensus 85 g~~-~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 85 ATL-QAKAEDLDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp SCC-CCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCc-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 999 8999999999999999999999999999998754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-17 Score=203.19 Aligned_cols=415 Identities=10% Similarity=0.041 Sum_probs=301.2
Q ss_pred ccchHHHHHHHHHHHhhh--chHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHH
Q 002100 435 KSNTTVMLLERLVESATE--SWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLM 512 (967)
Q Consensus 435 ~~~~~~~ll~~l~~~~~~--~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l 512 (967)
....+.++++++.-.... +-.....+..++.+....++..+.+.-+++.+ .-.+|.++...|.+++|...|
T Consensus 1000 lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d-------~~eIA~Iai~lglyEEAf~IY 1072 (1630)
T 1xi4_A 1000 LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYD-------APDIANIAISNELFEEAFAIF 1072 (1630)
T ss_pred CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhcc-------HHHHHHHHHhCCCHHHHHHHH
Confidence 445556666665522110 11122222334444444445555554444322 223678888899999999999
Q ss_pred HHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHH
Q 002100 513 NSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELR 592 (967)
Q Consensus 513 ~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l 592 (967)
++.-.........+...+.| ++|++.++++ +.+.+|+.+|.++...|++++|+..|.++ .++..|..+
T Consensus 1073 kKa~~~~~A~~VLie~i~nl---drAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eV 1140 (1630)
T 1xi4_A 1073 RKFDVNTSAVQVLIEHIGNL---DRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEV 1140 (1630)
T ss_pred HHcCCHHHHHHHHHHHHhhH---HHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHH
Confidence 99742222223333345544 7777777654 67899999999999999999999999875 578899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHh
Q 002100 593 AWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLA 672 (967)
Q Consensus 593 a~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~ 672 (967)
|.++.+.|+|++|++.|..+.+..++... . ..++..|...++++. ++.| +
T Consensus 1141 a~~~~~lGkyEEAIeyL~mArk~~~e~~I-d------t~LafaYAKl~rlee-------------------le~f---I- 1190 (1630)
T 1xi4_A 1141 VQAANTSGNWEELVKYLQMARKKARESYV-E------TELIFALAKTNRLAE-------------------LEEF---I- 1190 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhcccccc-c------HHHHHHHHhhcCHHH-------------------HHHH---H-
Confidence 99999999999999999999988755311 1 224566666555542 3333 2
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Q 002100 673 NDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKA 752 (967)
Q Consensus 673 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 752 (967)
..+ +...+...|..+...|+|++|+..|.++ ..|..+|.++.++|++++|++.+.+|. ++
T Consensus 1191 ~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~--n~--------- 1250 (1630)
T 1xi4_A 1191 NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--ST--------- 1250 (1630)
T ss_pred hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC--CH---------
Confidence 233 3456668999999999999999999996 478899999999999999999999984 22
Q ss_pred HHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC
Q 002100 753 YALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKN 832 (967)
Q Consensus 753 ~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g 832 (967)
.+|.+.+.++.+.|+|..|..+... +. .+++.+..++..|...|
T Consensus 1251 ----------------------------------~aWkev~~acve~~Ef~LA~~cgl~-Ii-v~~deLeeli~yYe~~G 1294 (1630)
T 1xi4_A 1251 ----------------------------------RTWKEVCFACVDGKEFRLAQMCGLH-IV-VHADELEELINYYQDRG 1294 (1630)
T ss_pred ----------------------------------HHHHHHHHHHhhhhHHHHHHHHHHh-hh-cCHHHHHHHHHHHHHcC
Confidence 6888999999999999999998874 32 34555668999999999
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHc----c--CChHHHHHHHHHhhccCC-----CCchHHHHHHHHHHhCCCHHHH
Q 002100 833 QRKAAYDEMTKLIEKARNNASAYEKRSE----Y--CDRDMAKSDLSMATQLDP-----MRTYPYRYRAAVLMDDHKEAEA 901 (967)
Q Consensus 833 ~~~~A~~~~~~al~~~p~~~~~~~~~~~----~--~~~~~A~~~l~~al~l~p-----~~~~~~~~la~~~~~~g~~~eA 901 (967)
.+++|+..+++++.++|.+...+..++. | ++..+++..|...+.+.| .....|..+..+|.+-|+++.|
T Consensus 1295 ~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1295 YFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred CHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 9999999999999999999888877774 2 778899999999999888 7888999999999999999999
Q ss_pred HHH-------------HHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHH
Q 002100 902 IAE-------------LSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYD 956 (967)
Q Consensus 902 i~~-------------~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~ 956 (967)
+.. |...+....+++.++....+|. +....++.++..++.-.-++..+..++.
T Consensus 1375 ~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl--~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1375 IITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH--hhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 933 3333334444678887777777 5555666666666644444444444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-19 Score=193.03 Aligned_cols=229 Identities=14% Similarity=0.098 Sum_probs=207.2
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchHHHH
Q 002100 674 DPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYD----TGHREEALAKAEESISIQRSFEAFF 749 (967)
Q Consensus 674 ~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~ 749 (967)
+|.++.+++.+|.++...|++++|+..|+++++ |+++.+++.+|.++.. .+++++|+..|+++++.+ +.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~--- 74 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YS--- 74 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH---
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CH---
Confidence 477889999999999999999999999999999 7788999999999999 999999999999999664 22
Q ss_pred HHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHh----cccHHHHHHHHHHHhccCcHHHHHHHH
Q 002100 750 LKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVD----CEKLDLAADCYMNALNIKHTRAHQGLA 825 (967)
Q Consensus 750 ~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~~~~~~a~~~la 825 (967)
.+++++|.+|.. .+++++|+.+|+++++.++..++..+|
T Consensus 75 -------------------------------------~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 117 (273)
T 1ouv_A 75 -------------------------------------NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLG 117 (273)
T ss_dssp -------------------------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 689999999999 999999999999999999999999999
Q ss_pred HHHHH----hCCHHHHHHHHHHHHHHccCCHHHHHHHHc--------cCChHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 002100 826 RVYHL----KNQRKAAYDEMTKLIEKARNNASAYEKRSE--------YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLM 893 (967)
Q Consensus 826 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~--------~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~ 893 (967)
.+|.. .+++++|+..|+++++.. +..++..++. .+++++|+..|+++++.+ ++.++..+|.+|.
T Consensus 118 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 118 GIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYH 193 (273)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH
Confidence 99999 999999999999999976 5677777762 479999999999999874 5789999999999
Q ss_pred h----CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCchhH
Q 002100 894 D----DHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDS----MGDHLHTQRDCEAALCLDPNHTDT 951 (967)
Q Consensus 894 ~----~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~~ 951 (967)
. .+++++|+.+|+++++..| ..+++.+|.+|.. .+++++|+..|++++++.|++...
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 9 9999999999999999977 6789999999999 999999999999999999876543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-20 Score=203.68 Aligned_cols=274 Identities=17% Similarity=0.106 Sum_probs=210.7
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHH
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAV 666 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~ 666 (967)
..+...|..+...|++++|+..|+++++.+|+++...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------------------- 42 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTL------------------------------------------- 42 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHH-------------------------------------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHH-------------------------------------------
Confidence 3456667777777777777777777777766644322
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 667 VHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY------STSEHEKLVYEGWILYDTGHREEALAKAEESIS 740 (967)
Q Consensus 667 ~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 740 (967)
..++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..++++++
T Consensus 43 -----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 111 (338)
T 3ro2_A 43 -----------SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 111 (338)
T ss_dssp -----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 123445566666677777777777776655 344567888999999999999999999999997
Q ss_pred cccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhccc-------------------
Q 002100 741 IQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEK------------------- 801 (967)
Q Consensus 741 ~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~------------------- 801 (967)
+.+... +......++..+|.++...|+
T Consensus 112 ~~~~~~----------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 112 ISRELN----------------------------------DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp HHHHTT----------------------------------CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred HHHHhc----------------------------------CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 766321 011223688899999999999
Q ss_pred -HHHHHHHHHHHhcc----C-c---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC------HHHHHHHHcc----C
Q 002100 802 -LDLAADCYMNALNI----K-H---TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNN------ASAYEKRSEY----C 862 (967)
Q Consensus 802 -~~~A~~~~~~Al~~----~-~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~----~ 862 (967)
+++|+..|++++.. + + ..++..+|.++...|++++|+..++++++..+.. ..++..++.. +
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC
Confidence 99999999998873 1 1 2378889999999999999999999999887643 2266666632 9
Q ss_pred ChHHHHHHHHHhhccCCCC------chHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHcC
Q 002100 863 DRDMAKSDLSMATQLDPMR------TYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL-------QLLHLRAAFHDSMG 929 (967)
Q Consensus 863 ~~~~A~~~l~~al~l~p~~------~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~-------~~~~~~a~~~~~~g 929 (967)
++++|+..+++++++.|.. ..++..+|.++...|++++|+..++++++..+.. .++..+|.++..+|
T Consensus 238 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (338)
T 3ro2_A 238 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 9999999999999887665 6788899999999999999999999999876541 27888999999999
Q ss_pred ChHHHHHHHHHHHhcCCCc
Q 002100 930 DHLHTQRDCEAALCLDPNH 948 (967)
Q Consensus 930 ~~~~A~~~~~~al~~~P~~ 948 (967)
++++|...+++++++.+..
T Consensus 318 ~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 318 NHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp CHHHHHHHHHHHHHC----
T ss_pred ChHHHHHHHHHHHHHHHhh
Confidence 9999999999999998764
|
| >2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.6e-22 Score=182.27 Aligned_cols=110 Identities=19% Similarity=0.228 Sum_probs=98.1
Q ss_pred ccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
...+...+.++++++.+|||+|+|+|++|+|||.|||++|+||++||.++ ....|.|+.+++++++|+.+|+|+||
T Consensus 6 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt 81 (116)
T 2vpk_A 6 CEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYT 81 (116)
T ss_dssp HHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcC
Confidence 33445566777888999999999999999999999999999999999987 35678887224999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHH
Q 002100 319 KMLDSFDPRLVLELLSFANRFCCEELKSACDSYLA 353 (967)
Q Consensus 319 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~ 353 (967)
|++ .++.+++.+++.+|++|+++.|++.|+++|.
T Consensus 82 ~~~-~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 82 GTL-NLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp SCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred CCc-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999 8999999999999999999999999999985
|
| >2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-22 Score=189.06 Aligned_cols=113 Identities=15% Similarity=0.092 Sum_probs=97.6
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR 317 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y 317 (967)
+...+...+.++++++.+|||+|+|+|++|+|||+|||++|+||++||.+++ ..+|+|++ +++++|+.+|+|||
T Consensus 8 h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~--~~~~~f~~lL~fiY 81 (135)
T 2yy9_A 8 HSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPA--GFAEIFGLLLDFFY 81 (135)
T ss_dssp HHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEECG--GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCC--CCHHHHHHHHHHHh
Confidence 3445556677788899999999999999999999999999999999999877 56799977 99999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCC
Q 002100 318 TKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVS 357 (967)
Q Consensus 318 t~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~ 357 (967)
||++ .++.+++.+|+.+|++|+++.|++.|+++|.+.+.
T Consensus 82 tg~~-~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~ 120 (135)
T 2yy9_A 82 TGHL-ALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSV 120 (135)
T ss_dssp HSCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC----
T ss_pred CCCC-CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc
Confidence 9999 89999999999999999999999999999988875
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-20 Score=201.75 Aligned_cols=273 Identities=14% Similarity=0.053 Sum_probs=220.6
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCC----chhHHHHHHHHHhcCcHHHHHHHHHHHhcc------CC-ChhHHHH
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTL----SYPYKYRAILLVEENKLAAAITEINRIIGF------KV-SPDCLEL 591 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p-~~~~~~~ 591 (967)
|..+...+.| ++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++.. .| ...++..
T Consensus 12 g~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 12 GERLCKSGDC---RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHTTCH---HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhccH---HHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 4555555645 99999999999999988 467889999999999999999999999887 33 4678999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhc--------------------hhhHhhHHHH
Q 002100 592 RAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQ--------------------WSQADCWMQL 651 (967)
Q Consensus 592 la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~A~~~~~l 651 (967)
+|.++...|++++|+..+++++++.|..............++.++...++ +++|
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A------ 162 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA------ 162 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH------
Confidence 99999999999999999999999866543321112223678899999998 7777
Q ss_pred HhhhccccccchHHHHHHHHhc------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchh------HHHHHHH
Q 002100 652 YDRWSSVDDIGSLAVVHHMLAN------DPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEH------EKLVYEG 719 (967)
Q Consensus 652 ~~~~~~~d~~~al~~~~~~l~~------~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~------~a~~~lg 719 (967)
+..+.++++. .+.....+..+|.++...|++++|+..++++++..+... .++..+|
T Consensus 163 ------------~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 230 (338)
T 3ro2_A 163 ------------VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 230 (338)
T ss_dssp ------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 6666666554 334456788999999999999999999999998766543 3889999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc
Q 002100 720 WILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC 799 (967)
Q Consensus 720 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~ 799 (967)
.++...|++++|+..+++++.+.+... ..+....++..+|.++...
T Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------------~~~~~~~~~~~la~~~~~~ 276 (338)
T 3ro2_A 231 NAYIFLGEFETASEYYKKTLLLARQLK----------------------------------DRAVEAQSCYSLGNTYTLL 276 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhc----------------------------------chhHHHHHHHHHHHHHHHh
Confidence 999999999999999999997766321 0112236889999999999
Q ss_pred ccHHHHHHHHHHHhccCc--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002100 800 EKLDLAADCYMNALNIKH--------TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 800 g~~~~A~~~~~~Al~~~~--------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
|++++|+.+|+++++..+ ..++..+|.++..+|++++|...++++++..+.
T Consensus 277 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 277 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 999999999999998322 237889999999999999999999999998765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-19 Score=190.68 Aligned_cols=233 Identities=12% Similarity=0.019 Sum_probs=206.1
Q ss_pred CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 549 DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIA----LEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 549 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
+|+++.+++.+|.++...|++++|+..|+++++ | ++.+++.+|.+|.. .+++++|+..|+++++.+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 578889999999999999999999999999998 6 78899999999999 999999999999999885 56666
Q ss_pred hhhhhhhhHhhhHHH----hhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH----hcCHH
Q 002100 624 GQLHGDNLVETLQPL----VQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR----LNSQK 695 (967)
Q Consensus 624 ~~~~~~~~~~~l~~~----~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~----~g~~~ 695 (967)
+.++.++.. .+++++| +..++++++.+ ++.+++.+|.+|.. .++++
T Consensus 78 ------~~lg~~~~~g~~~~~~~~~A------------------~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 78 ------HLLGNLYYSGQGVSQNTNKA------------------LQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp ------HHHHHHHHHTSSSCCCHHHH------------------HHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ------HHHHHHHhCCCCcccCHHHH------------------HHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHH
Confidence 778888888 8888888 88999998874 78899999999999 99999
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHH
Q 002100 696 AAMRSLRLARNYSTSEHEKLVYEGWILYD----TGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQL 771 (967)
Q Consensus 696 ~A~~~l~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~ 771 (967)
+|+..|+++++.. ++.++..+|.++.. .+++++|+..|+++++..+ .
T Consensus 132 ~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~------------------------- 182 (273)
T 1ouv_A 132 KAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD--S------------------------- 182 (273)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--H-------------------------
T ss_pred HHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--H-------------------------
Confidence 9999999999976 56788999999998 9999999999999986643 2
Q ss_pred HHHHhcCCCCCCchHHHHHHhHHHHHh----cccHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hCCHHHHHHHHHH
Q 002100 772 LEEALRCPSDGLRKGQALNNLGSVYVD----CEKLDLAADCYMNALNIKHTRAHQGLARVYHL----KNQRKAAYDEMTK 843 (967)
Q Consensus 772 le~~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~----~g~~~~A~~~~~~ 843 (967)
.+++++|.+|.. .+++++|+.+|+++++.++..++..+|.+|.. .+++++|+++|++
T Consensus 183 ---------------~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 183 ---------------PGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp ---------------HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred ---------------HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 678899999999 99999999999999999998899999999999 9999999999999
Q ss_pred HHHHccCCHHHH
Q 002100 844 LIEKARNNASAY 855 (967)
Q Consensus 844 al~~~p~~~~~~ 855 (967)
+++..|+++..+
T Consensus 248 a~~~~~~~a~~~ 259 (273)
T 1ouv_A 248 GCKLGAKGACDI 259 (273)
T ss_dssp HHHHTCHHHHHH
T ss_pred HHHcCCHHHHHH
Confidence 999988644433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-19 Score=180.19 Aligned_cols=172 Identities=10% Similarity=0.099 Sum_probs=164.2
Q ss_pred CCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhh
Q 002100 551 TLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGD 629 (967)
Q Consensus 551 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 629 (967)
+.+.+|+.+|.++..+|++++|++.|+++++++| ++.++..+|.+|..+|++++|+..+.+++..+|++..++
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------ 76 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAY------ 76 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHH------
Confidence 4567899999999999999999999999999999 899999999999999999999999999999999999988
Q ss_pred hhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 002100 630 NLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST 709 (967)
Q Consensus 630 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p 709 (967)
...+.++...++++.+ +..+.++++.+|.+..++..+|.++..+|++++|+..|+++++.+|
T Consensus 77 ~~~~~~~~~~~~~~~a------------------~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 77 YILGSANFMIDEKQAA------------------IDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence 7788899999999998 8999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 710 SEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 710 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
+++.++..+|.++..+|++++|+..|+++++++|+++
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 9999999999999999999999999999999999765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=8.7e-20 Score=195.40 Aligned_cols=232 Identities=16% Similarity=0.080 Sum_probs=171.3
Q ss_pred HHHHHHHHhcC----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 664 LAVVHHMLAND----PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 664 l~~~~~~l~~~----p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
+..+.++++.. |.++..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 104 (275)
T 1xnf_A 25 LARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 104 (275)
T ss_dssp HHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888888763 45567788888888888888888888888888888888888888888888888888888888888
Q ss_pred hcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH
Q 002100 740 SIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR 819 (967)
Q Consensus 740 ~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 819 (967)
+++|++. .++..+|.+|...|++++|+.+|+++++..+..
T Consensus 105 ~~~~~~~----------------------------------------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 105 ELDPTYN----------------------------------------YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp HHCTTCT----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hcCcccc----------------------------------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 8877544 678888888888888888888888888744432
Q ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc---CChHHHHHHHHHhhccCCCC----chHHHHHHH
Q 002100 820 --AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY---CDRDMAKSDLSMATQLDPMR----TYPYRYRAA 890 (967)
Q Consensus 820 --a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~---~~~~~A~~~l~~al~l~p~~----~~~~~~la~ 890 (967)
....++ +....|++++|+..+++++...|++...+.....+ ++.++|+..++++++.+|.. +.++..+|.
T Consensus 145 ~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 223 (275)
T 1xnf_A 145 PFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGK 223 (275)
T ss_dssp HHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHH
Confidence 333333 44666888888888888888887766655544422 56677888888877776643 567777888
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHH
Q 002100 891 VLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDC 938 (967)
Q Consensus 891 ~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~ 938 (967)
++...|++++|+..|+++++.+|+.. ...+.++..+|++++|+..|
T Consensus 224 ~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 224 YYLSLGDLDSATALFKLAVANNVHNF--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCTTC--HHHHHHHHHHHHHHHC----
T ss_pred HHHHcCCHHHHHHHHHHHHhCCchhH--HHHHHHHHHHHHHHhhHHHH
Confidence 88888888888888888888777642 22366677777777777776
|
| >2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-21 Score=180.21 Aligned_cols=108 Identities=16% Similarity=0.237 Sum_probs=97.7
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR 317 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y 317 (967)
+...+...+.++++++.+|||+|+|+|++|+|||.||+++|+||++||.++ ..+|.+++ +++++|+.+|+|+|
T Consensus 10 h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~--~~~~~f~~ll~~~Y 82 (119)
T 2q81_A 10 HSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLDI--SNAAGLGQVLEFMY 82 (119)
T ss_dssp HHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCC--CCHHHHHHHHHHHc
Confidence 344555667778888999999999999999999999999999999999863 45788876 99999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHH
Q 002100 318 TKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLA 353 (967)
Q Consensus 318 t~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~ 353 (967)
||++ .++.+++.+++.+|++|+++.|++.|+++|.
T Consensus 83 tg~~-~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 83 TAKL-SLSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HSCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCCC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999 8999999999999999999999999999984
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-19 Score=179.66 Aligned_cols=177 Identities=19% Similarity=0.201 Sum_probs=163.6
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchH
Q 002100 585 SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSL 664 (967)
Q Consensus 585 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al 664 (967)
++.+|+.+|.+|..+|++++|+..|+++++++|++..++ ..++.++...+++++| +
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~la~~~~~~~~~~~a------------------~ 59 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETL------LKLGKTYMDIGLPNDA------------------I 59 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCHHHH------------------H
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHCCCHHHH------------------H
Confidence 567899999999999999999999999999999999998 7789999999999999 8
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccc
Q 002100 665 AVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRS 744 (967)
Q Consensus 665 ~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 744 (967)
..+.+++...|..+..+..+|.++...++++.|+..+.+++..+|++..++..+|.++..+|++++|+..|+++++++|+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~ 139 (184)
T 3vtx_A 60 ESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG 139 (184)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred hHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHH
Q 002100 745 FEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGL 824 (967)
Q Consensus 745 ~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~l 824 (967)
+. .+++++|.+|..+|++++|+.+|++|++++|..+.+.|
T Consensus 140 ~~----------------------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~~l 179 (184)
T 3vtx_A 140 FI----------------------------------------RAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYEL 179 (184)
T ss_dssp CH----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHHHCS
T ss_pred hh----------------------------------------hHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHHHHH
Confidence 66 78999999999999999999999999998887766655
Q ss_pred H
Q 002100 825 A 825 (967)
Q Consensus 825 a 825 (967)
|
T Consensus 180 a 180 (184)
T 3vtx_A 180 A 180 (184)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-19 Score=191.97 Aligned_cols=243 Identities=12% Similarity=0.050 Sum_probs=160.7
Q ss_pred HHHHHHHHHhHhhC----CCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHH
Q 002100 536 KEKMMDLNTATELD----PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVR 610 (967)
Q Consensus 536 ~~A~~~~~~al~l~----P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~ 610 (967)
++|+..|+++++.. |.++.+++.+|.++...|++++|+..|++++..+| ++.++..+|.++...|++++|+..|+
T Consensus 22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 101 (275)
T 1xnf_A 22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 101 (275)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77777777777763 44566777777777777777777777777777777 67777777777777777777777777
Q ss_pred HHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 002100 611 ALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR 690 (967)
Q Consensus 611 ~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~ 690 (967)
++++++|++..++ ..++.++...+++++| +..+.++++.+|.+.......+.. ..
T Consensus 102 ~al~~~~~~~~~~------~~la~~~~~~g~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~-~~ 156 (275)
T 1xnf_A 102 SVLELDPTYNYAH------LNRGIALYYGGRDKLA------------------QDDLLAFYQDDPNDPFRSLWLYLA-EQ 156 (275)
T ss_dssp HHHHHCTTCTHHH------HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHH-HH
T ss_pred HHHhcCccccHHH------HHHHHHHHHhccHHHH------------------HHHHHHHHHhCCCChHHHHHHHHH-HH
Confidence 7777777777666 5667777777777777 677777777777766555444433 55
Q ss_pred hcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHH
Q 002100 691 LNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQ 770 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~ 770 (967)
.|++++|+..+++++...|.+...+. ++.++...++.++|+..+++++...|...
T Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------------ 211 (275)
T 1xnf_A 157 KLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLA------------------------ 211 (275)
T ss_dssp HHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH------------------------
T ss_pred hcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhccccccc------------------------
Confidence 57777777777777777666554433 55556666666777777777766555221
Q ss_pred HHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 002100 771 LLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEM 841 (967)
Q Consensus 771 ~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~ 841 (967)
+....++..+|.+|...|++++|+..|+++++.+|.. +...+.++...|++++|++.+
T Consensus 212 ------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 212 ------------EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHHHHHHC----
T ss_pred ------------ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh-HHHHHHHHHHHHHHHhhHHHH
Confidence 0112566677777777777777777777777755433 222355666667777666665
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=210.02 Aligned_cols=212 Identities=8% Similarity=-0.005 Sum_probs=201.2
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcH-HHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKL-AAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALL 613 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al 613 (967)
++++..++++....|+++.+++.+|.++...|++ ++|++.|+++++++| ++.++..+|.+|..+|++++|+..|++++
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999 999999999999999 89999999999999999999999999999
Q ss_pred HhCCCchHHhhhhhhhhhHhhhHHHh---------hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHH
Q 002100 614 TLDPSYMMFYGQLHGDNLVETLQPLV---------QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQ 684 (967)
Q Consensus 614 ~l~p~~~~~~~~~~~~~~~~~l~~~~---------~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~ 684 (967)
+++|+ ..++ ..++.++... +++++| +..++++++.+|.++.+++.+
T Consensus 165 ~~~p~-~~~~------~~lg~~~~~~~~~~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~l 219 (474)
T 4abn_A 165 THCKN-KVSL------QNLSMVLRQLQTDSGDEHSRHVMDS------------------VRQAKLAVQMDVLDGRSWYIL 219 (474)
T ss_dssp TTCCC-HHHH------HHHHHHHTTCCCSCHHHHHHHHHHH------------------HHHHHHHHHHCTTCHHHHHHH
T ss_pred hhCCC-HHHH------HHHHHHHHHhccCChhhhhhhHHHH------------------HHHHHHHHHhCCCCHHHHHHH
Confidence 99999 5666 7788889888 999998 999999999999999999999
Q ss_pred HHHHHHh--------cCHHHHHHHHHHHHhcCC---chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Q 002100 685 SLLLLRL--------NSQKAAMRSLRLARNYST---SEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY 753 (967)
Q Consensus 685 g~~~~~~--------g~~~~A~~~l~~al~~~p---~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 753 (967)
|.+|... |++++|+..|+++++.+| +++.+++++|.++...|++++|+..|+++++++|++.
T Consensus 220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~------- 292 (474)
T 4abn_A 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP------- 292 (474)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------
Confidence 9999999 999999999999999999 9999999999999999999999999999999999776
Q ss_pred HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHH
Q 002100 754 ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNA 812 (967)
Q Consensus 754 ~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~A 812 (967)
.++.+++.++...|++++|+..+.+.
T Consensus 293 ---------------------------------~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 293 ---------------------------------EPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78999999999999999999877554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=184.45 Aligned_cols=214 Identities=14% Similarity=0.043 Sum_probs=186.9
Q ss_pred hcCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Q 002100 672 ANDPGK-SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFL 750 (967)
Q Consensus 672 ~~~p~~-~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 750 (967)
+.+|.. +..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|...
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---- 105 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA---- 105 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH----
Confidence 345655 678899999999999999999999999999999999999999999999999999999999998888555
Q ss_pred HHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc--cCc--HHHHHHHHH
Q 002100 751 KAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN--IKH--TRAHQGLAR 826 (967)
Q Consensus 751 ~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~~~--~~a~~~la~ 826 (967)
.++..+|.++...|++++|+.+|+++++ ..+ ..++..+|.
T Consensus 106 ------------------------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 106 ------------------------------------RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp ------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 6888999999999999999999999988 433 348888999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHH
Q 002100 827 VYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELS 906 (967)
Q Consensus 827 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~ 906 (967)
++...|++++|+..++++++..| .+..++..+|.++...|++++|+..++
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~ 199 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKSLRLNR------------------------------NQPSVALEMADLLYKEREYVPARQYYD 199 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCS------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCc------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999888888887776555 456677889999999999999999999
Q ss_pred HHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 002100 907 RAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELY 955 (967)
Q Consensus 907 kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~ 955 (967)
++++..|+ ...+..++.++...|++++|...++++++++|+++.+..++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 200 LFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999988 45888899999999999999999999999999999887654
|
| >2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.4e-22 Score=186.31 Aligned_cols=112 Identities=14% Similarity=0.232 Sum_probs=97.8
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR 317 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y 317 (967)
+..++...+.++++++.+|||+|+|+|++|+|||.|||++|+||++||.+++.|+ .+|.++ +++++++|+.+|+|+|
T Consensus 12 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~-~~v~~~~f~~lL~~iY 88 (124)
T 2ihc_A 12 HSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLP-EEVTVKGFEPLIQFAY 88 (124)
T ss_dssp HHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECC-TTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeec-CCcCHHHHHHHHHHhc
Confidence 3445556677888889999999999999999999999999999999999998774 578885 2499999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHH
Q 002100 318 TKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLA 353 (967)
Q Consensus 318 t~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~ 353 (967)
||++ .++.+++.+++.+|++|+++.|++.|+++|.
T Consensus 89 tg~~-~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 89 TAKL-ILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HSEE-EEETTTHHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred CCCc-ccCHHHHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 9999 8999999999999999999999999998874
|
| >3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-22 Score=185.82 Aligned_cols=111 Identities=19% Similarity=0.245 Sum_probs=99.9
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR 317 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y 317 (967)
+...+...+.++++++.+|||+|+|+|++|+|||.|||++|+||++||.+++.| ...|.+++ ++++++|+.+|+|+|
T Consensus 15 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~-~~~~~~f~~~l~~iY 91 (125)
T 3ohu_A 15 HCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPE-EVTARGFGPLLQFAY 91 (125)
T ss_dssp HHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCT-TCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCC-CCCHHHHHHHHHhHc
Confidence 344555667778888999999999999999999999999999999999999887 66788863 499999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHH
Q 002100 318 TKMLDSFDPRLVLELLSFANRFCCEELKSACDSYL 352 (967)
Q Consensus 318 t~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l 352 (967)
||++ .++.+++.+++.+|++|+++.|++.|+++|
T Consensus 92 tg~~-~~~~~~v~~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 92 TAKL-LLSRENIREVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp TSEE-EECTTTHHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred CCce-EECHHHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence 9999 899999999999999999999999998754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-19 Score=187.50 Aligned_cols=167 Identities=17% Similarity=0.080 Sum_probs=83.6
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhh
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNL 631 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 631 (967)
+..++.+|..+...|++++|+..|++++..+| +..++..+|.++...|++++|+..++++++.+|++..++ ..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~ 96 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAY------YG 96 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHH------HH
Confidence 45566677777777777777777777777777 667777777777777777777777777776666655554 34
Q ss_pred HhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002100 632 VETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE 711 (967)
Q Consensus 632 ~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~ 711 (967)
++.++...+++++| +..+.++++.+|.++..+..+|.++...|++++|+..++++++..|++
T Consensus 97 la~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 158 (243)
T 2q7f_A 97 AGNVYVVKEMYKEA------------------KDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158 (243)
T ss_dssp HHHHHHHTTCHHHH------------------HHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhccHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 44445554455444 444555555555444444444555555555555555555555444444
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 712 HEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 712 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
..++..+|.++...|++++|+..++++++.+|
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 190 (243)
T 2q7f_A 159 TEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190 (243)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 44444444444444444444444444444444
|
| >3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-21 Score=184.07 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=94.0
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR 317 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y 317 (967)
+...+...+.++++++.+|||+|+|+|++|+|||.||+++|+||++||.++ ...+|.|++ ++++++|+.+|+|+|
T Consensus 16 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~-~~~~~~f~~ll~~iY 90 (129)
T 3ga1_A 16 FGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPA-AVQPQSFQQILSFCY 90 (129)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCT-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECC-CCCHHHHHHHHHHHh
Confidence 344455666777888999999999999999999999999999999999876 567899961 399999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhC
Q 002100 318 TKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASMV 356 (967)
Q Consensus 318 t~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~ 356 (967)
||++ .++.+++.+++.+|++|+++.|++.|+++|.+..
T Consensus 91 tg~~-~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~~ 128 (129)
T 3ga1_A 91 TGRL-SMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKVS 128 (129)
T ss_dssp HSEE-ECCTTTHHHHHHHHHHTTBTTSSCC---------
T ss_pred CCcc-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 9999 8999999999999999999999999999998754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-18 Score=177.05 Aligned_cols=213 Identities=11% Similarity=-0.012 Sum_probs=187.3
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Q 002100 673 NDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKA 752 (967)
Q Consensus 673 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 752 (967)
..|.++..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++..+|+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 76 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA------ 76 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------
Confidence 45777888999999999999999999999999999999999999999999999999999999999998888555
Q ss_pred HHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc-ccHHHHHHHHHHHhc--cCc--HHHHHHHHHH
Q 002100 753 YALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC-EKLDLAADCYMNALN--IKH--TRAHQGLARV 827 (967)
Q Consensus 753 ~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~-g~~~~A~~~~~~Al~--~~~--~~a~~~la~~ 827 (967)
.++..+|.++... |++++|+.+|+++++ ..+ ..++..+|.+
T Consensus 77 ----------------------------------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 122 (225)
T 2vq2_A 77 ----------------------------------EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122 (225)
T ss_dssp ----------------------------------HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence 6888899999999 999999999999998 333 4588899999
Q ss_pred HHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHH
Q 002100 828 YHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSR 907 (967)
Q Consensus 828 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~k 907 (967)
+...|++++|+..++++++..| .++.++..+|.++...|++++|+..+++
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~~------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQP------------------------------QFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST------------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC------------------------------CCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999988888887776655 4556778899999999999999999999
Q ss_pred HHhcCC-C-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 002100 908 AIAFKP-D-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELY 955 (967)
Q Consensus 908 al~~~p-~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~ 955 (967)
+++..| + ...+..++.++...|++++|...++.+++.+|+++.+..++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 173 YQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999998 6 45778888999999999999999999999999999887765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.1e-19 Score=184.49 Aligned_cols=200 Identities=16% Similarity=0.119 Sum_probs=179.7
Q ss_pred CcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHH
Q 002100 520 TPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIA 598 (967)
Q Consensus 520 ~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~ 598 (967)
...|..+...+.| ++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+| +..++..+|.++..
T Consensus 27 ~~~a~~~~~~~~~---~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 27 GQQMGRGSEFGDY---EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCH---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 3456677777766 9999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh
Q 002100 599 LEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS 678 (967)
Q Consensus 599 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~ 678 (967)
.|++++|+..++++++.+|++...+ ..++.++...+++++| +..+.++++.+|.++
T Consensus 104 ~~~~~~A~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~ 159 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAGMENGDLF------YMLGTVLVKLEQPKLA------------------LPYLQRAVELNENDT 159 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCCSHHHH------HHHHHHHHHTSCHHHH------------------HHHHHHHHHHCTTCH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHhccHHHH------------------HHHHHHHHHhCCccH
Confidence 9999999999999999999998888 7789999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
..+..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..++++++++|++.
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 160 EARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999776
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5e-18 Score=179.42 Aligned_cols=209 Identities=13% Similarity=0.009 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHH
Q 002100 586 PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLA 665 (967)
Q Consensus 586 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~ 665 (967)
+.++..+|.++...|++++|+..|+++++.+|++..++ ..++.++...+++++| +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------~~la~~~~~~~~~~~A------------------~~ 92 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAH------AALAVVFQTEMEPKLA------------------DE 92 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCHHHH------------------HH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHH------HHHHHHHHHcCCHHHH------------------HH
Confidence 45556666666666666666666666666666655555 4555556666666665 56
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 666 VVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARN--YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 666 ~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
.+.++++.+|.+..++..+|.++...|++++|+..++++++ ..|.+..++..+|.++...|++++|+..++++++..|
T Consensus 93 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (252)
T 2ho1_A 93 EYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR 172 (252)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 66666666666666677777788888888888888888888 7777888888888888888888888888888888777
Q ss_pred chHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--cHHHH
Q 002100 744 SFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--HTRAH 821 (967)
Q Consensus 744 ~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~ 821 (967)
.+. .++..+|.++...|++++|+.+|+++++.. ...++
T Consensus 173 ~~~----------------------------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 212 (252)
T 2ho1_A 173 NQP----------------------------------------SVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSL 212 (252)
T ss_dssp CCH----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHH
T ss_pred ccH----------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 544 677888888888888888888888888743 44578
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHH
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKR 858 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 858 (967)
..++.++...|++++|...++++++..|++..+...+
T Consensus 213 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 213 LLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 8888888888888888888888888888877765543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-18 Score=187.90 Aligned_cols=248 Identities=10% Similarity=-0.007 Sum_probs=166.1
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHh-------cCcH-------HHHHHHHHHHhc-cCC-ChhHHHHHHHHHHHh
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVE-------ENKL-------AAAITEINRIIG-FKV-SPDCLELRAWISIAL 599 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p-~~~~~~~la~~~~~~ 599 (967)
++|+..|+++++.+|+++.+|+.+|..+.. .|++ ++|+..|++++. ++| +..++..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 566666666666666666666666666553 2443 555555555555 455 455555555555555
Q ss_pred cCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChH
Q 002100 600 EDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSL 679 (967)
Q Consensus 600 g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~ 679 (967)
|++++|...|+++++++ |.++.
T Consensus 113 ~~~~~A~~~~~~al~~~----------------------------------------------------------p~~~~ 134 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIE----------------------------------------------------------DIDPT 134 (308)
T ss_dssp TCHHHHHHHHHHHHTSS----------------------------------------------------------SSCTH
T ss_pred CCHHHHHHHHHHHHhcc----------------------------------------------------------ccCcc
Confidence 55555555555555544 44443
Q ss_pred -HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH-cCChHHHHHHHHHHHhcccchHHHHHHHHHhhh
Q 002100 680 -LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYD-TGHREEALAKAEESISIQRSFEAFFLKAYALAD 757 (967)
Q Consensus 680 -~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~ 757 (967)
+|..+|.++.+.|++++|+..|+++++..|.....+...+.+... .|++++|+..|+++++.+|++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~----------- 203 (308)
T 2ond_A 135 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP----------- 203 (308)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH-----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----------
Confidence 555666667777778888888888888777777766655555433 6888888888888888888555
Q ss_pred cCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc---C---cHHHHHHHHHHHHHh
Q 002100 758 SSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI---K---HTRAHQGLARVYHLK 831 (967)
Q Consensus 758 ~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~---~---~~~a~~~la~~~~~~ 831 (967)
.+|.++|.++...|++++|+..|+++++. . ....|..++..+...
T Consensus 204 -----------------------------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~ 254 (308)
T 2ond_A 204 -----------------------------EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp -----------------------------HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 67788888888888888888888888873 2 234788888888888
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHH
Q 002100 832 NQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRA 889 (967)
Q Consensus 832 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la 889 (967)
|+++.|...++++++..|++...... ....+..+.+.++|+++..+..+|
T Consensus 255 g~~~~a~~~~~~a~~~~p~~~~~~~~--------~~~~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 255 GDLASILKVEKRRFTAFREEYEGKET--------ALLVDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp SCHHHHHHHHHHHHHHTTTTTSSCHH--------HHHHTTTCBTTBCSSCHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHcccccccchH--------HHHHHHHHhcccCCCCHHHHHhcC
Confidence 99999999999999888864322111 111222366778888888877766
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-17 Score=188.34 Aligned_cols=243 Identities=11% Similarity=0.027 Sum_probs=199.8
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHhccC---C----ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchH-Hhhhh
Q 002100 555 PYKYRAILLVEENKLAAAITEINRIIGFK---V----SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMM-FYGQL 626 (967)
Q Consensus 555 ~~~~la~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~~ 626 (967)
.++.+|..+...|++++|+..|++++.+. + ...++..+|.+|..+|++++|+..+++++++.+.... .....
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 45669999999999999999999999872 2 4679999999999999999999999999998655432 11112
Q ss_pred hhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh------HHHHHHHHHHHHhcCHHHHHHH
Q 002100 627 HGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS------LLRFRQSLLLLRLNSQKAAMRS 700 (967)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~------~~~~~~g~~~~~~g~~~~A~~~ 700 (967)
.....+|.++...++|++| +..+.++++..+... .++.++|.+|..+|++++|+..
T Consensus 185 ~~~~~lg~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 246 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDA------------------ISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY 246 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHH------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2337889999999999999 888888887755433 5788999999999999999999
Q ss_pred HHHHHh-----cC-CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHH
Q 002100 701 LRLARN-----YS-TSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEE 774 (967)
Q Consensus 701 l~~al~-----~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~ 774 (967)
|+++++ .+ |..+.++..+|.++..+|++++|+..+++++++.+...
T Consensus 247 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------- 298 (383)
T 3ulq_A 247 FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG---------------------------- 298 (383)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----------------------------
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----------------------------
Confidence 999999 56 88889999999999999999999999999998765211
Q ss_pred HhcCCCCCCchHHHHHHhHHHHHhccc---HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002100 775 ALRCPSDGLRKGQALNNLGSVYVDCEK---LDLAADCYMNALNI-KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 775 ~~~~~~~~~~~~~a~~~lg~~~~~~g~---~~~A~~~~~~Al~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
.+.....+..+|.+|...|+ +++|+..+++.-.. ....++..+|.+|..+|++++|...|+++++....
T Consensus 299 -------~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 299 -------DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp -------CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred -------CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 00111336779999999999 88888888887332 22338889999999999999999999999987653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-18 Score=177.24 Aligned_cols=212 Identities=10% Similarity=0.034 Sum_probs=140.3
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Q 002100 675 PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST-SEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY 753 (967)
Q Consensus 675 p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 753 (967)
+.++..++.+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++++|++.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------- 76 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA------- 76 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH-------
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH-------
Confidence 34456666666666666666666666666666666 5566666666666666666666666666666666444
Q ss_pred HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH---------HHHHHH
Q 002100 754 ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT---------RAHQGL 824 (967)
Q Consensus 754 ~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~---------~a~~~l 824 (967)
.++..+|.+|..+|++++|+..|+++++..|. .++..+
T Consensus 77 ---------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 123 (228)
T 4i17_A 77 ---------------------------------NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKE 123 (228)
T ss_dssp ---------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 55666666666666666666666666653322 224444
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCC--CchHHHHHHHHHHhCCCHHHHH
Q 002100 825 ARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPM--RTYPYRYRAAVLMDDHKEAEAI 902 (967)
Q Consensus 825 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~--~~~~~~~la~~~~~~g~~~eAi 902 (967)
|.++..+ +++++|+..|+++++++|+ ++.++.++|.+|...| .
T Consensus 124 g~~~~~~------------------------------~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-----~ 168 (228)
T 4i17_A 124 GQKFQQA------------------------------GNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG-----A 168 (228)
T ss_dssp HHHHHHT------------------------------TCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-----H
T ss_pred hHHHHHh------------------------------ccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-----H
Confidence 4444444 4555555556666666777 7778888888886544 4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 002100 903 AELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERV 962 (967)
Q Consensus 903 ~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~ 962 (967)
..++++..+.+... ....+......+.+++|+..|+++++++|++++++.++.+++..+
T Consensus 169 ~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~ 227 (228)
T 4i17_A 169 DVLRKATPLASSNK-EKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI 227 (228)
T ss_dssp HHHHHHGGGTTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 45667777765532 223455566778899999999999999999999999999987654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=195.84 Aligned_cols=309 Identities=9% Similarity=-0.033 Sum_probs=213.4
Q ss_pred HHHHHhcCcHHHHHHHHHHHhccCC----ChhHH--HH--HHHHHHHhcCHHHHH-----------HHHHHHHHhCCCch
Q 002100 560 AILLVEENKLAAAITEINRIIGFKV----SPDCL--EL--RAWISIALEDYDGAL-----------RDVRALLTLDPSYM 620 (967)
Q Consensus 560 a~~~~~~g~~~~A~~~~~~al~~~p----~~~~~--~~--la~~~~~~g~~~~A~-----------~~~~~al~l~p~~~ 620 (967)
....+..+++++|...++++...-+ +.+.+ +. ..+.....++++.+. +.++++- ..|...
T Consensus 19 w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~-~~~~~~ 97 (383)
T 3ulq_A 19 WYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEID-KKQARL 97 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHH-HHTHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHH-hcCCCc
Confidence 3445667777777777776644321 22222 21 222333344444444 4444432 222222
Q ss_pred HHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc---C---CCChHHHHHHHHHHHHhcCH
Q 002100 621 MFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN---D---PGKSLLRFRQSLLLLRLNSQ 694 (967)
Q Consensus 621 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~---~---p~~~~~~~~~g~~~~~~g~~ 694 (967)
......-..+..|..+...++|++| +..+.++++. . +..+.+++.+|.+|...|++
T Consensus 98 ~~~l~~~~~~~~g~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~ 159 (383)
T 3ulq_A 98 TGLLEYYFNFFRGMYELDQREYLSA------------------IKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQT 159 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHHHHHhcCHHHH------------------HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 2221100113467777777777777 7777777765 2 22456788999999999999
Q ss_pred HHHHHHHHHHHhcCC-------chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHH
Q 002100 695 KAAMRSLRLARNYST-------SEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAY 767 (967)
Q Consensus 695 ~~A~~~l~~al~~~p-------~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~ 767 (967)
++|+..++++++..+ ....++..+|.++..+|++++|+..|++++++.+...
T Consensus 160 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------- 218 (383)
T 3ulq_A 160 YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--------------------- 218 (383)
T ss_dssp HHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC---------------------
Confidence 999999999998743 3356888999999999999999999999997766221
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc-----cC-c--HHHHHHHHHHHHHhCCHHHHHH
Q 002100 768 VIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN-----IK-H--TRAHQGLARVYHLKNQRKAAYD 839 (967)
Q Consensus 768 a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-----~~-~--~~a~~~la~~~~~~g~~~~A~~ 839 (967)
+.+..+.++.++|.+|..+|++++|+.+|+++++ .+ + ..++.++|.++..+|++++|+.
T Consensus 219 -------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 285 (383)
T 3ulq_A 219 -------------QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHE 285 (383)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHH
Confidence 1123346889999999999999999999999998 23 2 3489999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCC-h
Q 002100 840 EMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK---EAEAIAELSRAIAFKPD-L 915 (967)
Q Consensus 840 ~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~---~~eAi~~~~kal~~~p~-~ 915 (967)
.++++++..+.. -+|.....+..+|.++...|+ +++|+..+++. ...|. .
T Consensus 286 ~~~~al~~~~~~-------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~ 339 (383)
T 3ulq_A 286 YHSKGMAYSQKA-------------------------GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLE 339 (383)
T ss_dssp HHHHHHHHHHHH-------------------------TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HHHHHHHHHHHc-------------------------CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHH
Confidence 999998875521 012222235568889999998 88888888776 22222 3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002100 916 QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPN 947 (967)
Q Consensus 916 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~ 947 (967)
.++..+|.+|..+|++++|+..|++++++...
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999999999987543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-17 Score=171.45 Aligned_cols=211 Identities=15% Similarity=0.050 Sum_probs=136.1
Q ss_pred CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhh
Q 002100 549 DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLH 627 (967)
Q Consensus 549 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 627 (967)
+|+++.+++.+|.++...|++++|+..|++++..+| ++.++..+|.++...|++++|+..+++++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------- 72 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK----------- 72 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----------
Confidence 344455555555555555555555555555555555 45555555555555555555555555555444
Q ss_pred hhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh-cCHHHHHHHHHHHHh
Q 002100 628 GDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRL-NSQKAAMRSLRLARN 706 (967)
Q Consensus 628 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~-g~~~~A~~~l~~al~ 706 (967)
|.+...+..+|.++... |++++|+..++++++
T Consensus 73 -----------------------------------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 73 -----------------------------------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp -----------------------------------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred -----------------------------------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 44444555566666666 777777777777776
Q ss_pred --cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCc
Q 002100 707 --YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLR 784 (967)
Q Consensus 707 --~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~ 784 (967)
..|.+..++..+|.++...|++++|+..++++++..|++.
T Consensus 106 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------------------------------------- 147 (225)
T 2vq2_A 106 DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP-------------------------------------- 147 (225)
T ss_dssp STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--------------------------------------
T ss_pred CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc--------------------------------------
Confidence 5566667777777777777777777777777777666444
Q ss_pred hHHHHHHhHHHHHhcccHHHHHHHHHHHhc--c-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHH
Q 002100 785 KGQALNNLGSVYVDCEKLDLAADCYMNALN--I-KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEK 857 (967)
Q Consensus 785 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 857 (967)
.++..+|.++...|++++|+..|+++++ + ....++..++.++...|++++|...++.+++..|+++.+...
T Consensus 148 --~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 148 --PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5667777777777777777777777776 3 444566677777777888888888887777777777666544
|
| >3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-20 Score=171.93 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=84.4
Q ss_pred CCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHHH
Q 002100 251 TSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVL 330 (967)
Q Consensus 251 ~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ 330 (967)
.++.+|||+|+|+|++|+|||+|||++|+||++ ....|.+++ +++++|+.+|+|+|||++ .++.+++.
T Consensus 26 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~--v~~~~f~~ll~fiYtg~~-~i~~~~v~ 93 (119)
T 3m5b_A 26 LRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGEG--ISPSTFAQLLNFVYGESV-ELQPGELR 93 (119)
T ss_dssp HTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCSS--CCHHHHHHHHHHHTTCCE-EECGGGHH
T ss_pred hcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeCC--CCHHHHHHHHHHHcCCCc-CcCHHHHH
Confidence 457899999999999999999999999999984 346788976 999999999999999999 89999999
Q ss_pred HHHHHhchhChHHHHHHHHHHHHh
Q 002100 331 ELLSFANRFCCEELKSACDSYLAS 354 (967)
Q Consensus 331 ~ll~~A~~~~~~~l~~~c~~~l~~ 354 (967)
+++.+|++|+++.|++.|++++.+
T Consensus 94 ~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 94 PLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhh
Confidence 999999999999999999998865
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=203.05 Aligned_cols=214 Identities=13% Similarity=0.118 Sum_probs=200.1
Q ss_pred cCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchh
Q 002100 566 ENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDY-DGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWS 643 (967)
Q Consensus 566 ~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~-~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~ 643 (967)
.+++++|+..++++....| +..+++.+|.++...|++ ++|+..|+++++++|++..++ ..++.++...++++
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~------~~lg~~~~~~g~~~ 154 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW------NQLGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHH------HHHHHHHHHcCCHH
Confidence 3457888999999999999 899999999999999999 999999999999999999999 88899999999999
Q ss_pred hHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhcCCchhHH
Q 002100 644 QADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRL---------NSQKAAMRSLRLARNYSTSEHEK 714 (967)
Q Consensus 644 ~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~---------g~~~~A~~~l~~al~~~p~~~~a 714 (967)
+| +..|+++++.+|+ ..++..+|.++... |++++|+..|+++++.+|+++.+
T Consensus 155 ~A------------------~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 215 (474)
T 4abn_A 155 SA------------------HTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215 (474)
T ss_dssp HH------------------HHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HH------------------HHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 99 9999999999999 79999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHhccc---chHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCC
Q 002100 715 LVYEGWILYDT--------GHREEALAKAEESISIQR---SFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGL 783 (967)
Q Consensus 715 ~~~lg~~~~~~--------g~~~eA~~~~~~al~~~p---~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~ 783 (967)
++.+|.++... |++++|+..|+++++++| ++.
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------------------------------------- 258 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNP------------------------------------- 258 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCH-------------------------------------
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCH-------------------------------------
Confidence 99999999999 999999999999999999 555
Q ss_pred chHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002100 784 RKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAYDEMTKL 844 (967)
Q Consensus 784 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~a 844 (967)
.+++++|.+|...|++++|+.+|+++++. +...++..++.++..+|++++|++.+.+.
T Consensus 259 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 259 ---DLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 79999999999999999999999999984 44568999999999999999999877544
|
| >3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-19 Score=167.05 Aligned_cols=101 Identities=12% Similarity=0.111 Sum_probs=91.2
Q ss_pred ccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
...+...+.++++++.+|||+|+|+|++|+|||.|||++|+||++||.++ ..+|.+++ +++++|+.+|+|+||
T Consensus 15 ~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~--~~~~~f~~~l~~~Yt 87 (116)
T 3fkc_A 15 SGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSF--IRAEIFAEILNYIYS 87 (116)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECS--SCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCC--CCHHHHHHHHHhhcC
Confidence 34455666777888999999999999999999999999999999999875 56899976 999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhchhChHHHHH
Q 002100 319 KMLDSFDPRLVLELLSFANRFCCEELKS 346 (967)
Q Consensus 319 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~ 346 (967)
|+++.++.+++.+++.+|++|+++.|++
T Consensus 88 g~~~~~~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 88 SKIVRVRSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp SCCCSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred CCcCCCCHHHHHHHHHHHHHhCccccCc
Confidence 9996699999999999999999999974
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-17 Score=183.30 Aligned_cols=217 Identities=13% Similarity=0.024 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHh-cccchHHHHHHHHHhhhcC
Q 002100 695 KAAMRSLRLARNYSTSEHEKLVYEGWILYD-------TGHR-------EEALAKAEESIS-IQRSFEAFFLKAYALADSS 759 (967)
Q Consensus 695 ~~A~~~l~~al~~~p~~~~a~~~lg~~~~~-------~g~~-------~eA~~~~~~al~-~~p~~~~~~~~~~~la~~~ 759 (967)
++|+..|++++..+|+++++|+.+|..+.. .|++ ++|+..|+++++ ++|++.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~------------- 99 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM------------- 99 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH-------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH-------------
Confidence 688899999999999999999999988864 5886 999999999999 688666
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--HH-HHHHHHHHHHHhCCHHH
Q 002100 760 LNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH--TR-AHQGLARVYHLKNQRKA 836 (967)
Q Consensus 760 ~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~-a~~~la~~~~~~g~~~~ 836 (967)
.+|.++|.++...|++++|+..|+++++..| .. +|..+|.++...|++++
T Consensus 100 ---------------------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 152 (308)
T 2ond_A 100 ---------------------------LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp ---------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHH
T ss_pred ---------------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHH
Confidence 7899999999999999999999999999554 44 89999999999999999
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHc-----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 002100 837 AYDEMTKLIEKARNNASAYEKRSE-----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAF 911 (967)
Q Consensus 837 A~~~~~~al~~~p~~~~~~~~~~~-----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~ 911 (967)
|...|+++++..|....+|...+. .|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.
T Consensus 153 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 153 GRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999998888877663 389999999999999999999999999999999999999999999999996
Q ss_pred ---CCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 002100 912 ---KPD--LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDT 951 (967)
Q Consensus 912 ---~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 951 (967)
.|+ ..++...+.++...|++++|...++++++.+|++.+.
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 443 3488888999999999999999999999999986654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-17 Score=171.25 Aligned_cols=81 Identities=9% Similarity=0.047 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchh-------HHHHHHHHHHHHcCChHHHHHHHH
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEH-------EKLVYEGWILYDTGHREEALAKAE 736 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~-------~a~~~lg~~~~~~g~~~eA~~~~~ 736 (967)
+..+.++++.+|.+..+++.+|.++..+|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|+
T Consensus 62 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 141 (228)
T 4i17_A 62 ADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYK 141 (228)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHH
Confidence 3333444444444444444445555555555555555555555555544 345556666666666666666666
Q ss_pred HHHhcccc
Q 002100 737 ESISIQRS 744 (967)
Q Consensus 737 ~al~~~p~ 744 (967)
++++++|+
T Consensus 142 ~al~~~p~ 149 (228)
T 4i17_A 142 HATDVTSK 149 (228)
T ss_dssp HHTTSSCH
T ss_pred HHHhcCCC
Confidence 66666664
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-18 Score=207.80 Aligned_cols=174 Identities=12% Similarity=0.035 Sum_probs=167.5
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhh
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQL 626 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 626 (967)
-.|+++.+|.++|.++.++|++++|++.|+++++++| +..++..+|.+|..+|++++|+..|+++++++|++..++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~--- 80 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY--- 80 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH---
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---
Confidence 4689999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred hhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002100 627 HGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARN 706 (967)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~ 706 (967)
.++|.++...+++++| +..|+++++++|++..+++++|.+|..+|++++|+..|+++++
T Consensus 81 ---~nLg~~l~~~g~~~~A------------------~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 81 ---SNMGNTLKEMQDVQGA------------------LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp ---HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8899999999999999 9999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch
Q 002100 707 YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF 745 (967)
Q Consensus 707 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 745 (967)
++|+++.++.++|.++..+|++++|++.+++++++.|+.
T Consensus 140 l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 140 LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 999999999999999999999999999999999887743
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-17 Score=174.66 Aligned_cols=180 Identities=12% Similarity=0.026 Sum_probs=161.6
Q ss_pred HhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchH
Q 002100 546 TELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S---PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMM 621 (967)
Q Consensus 546 l~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 621 (967)
.+++|+++..++.+|..++..|++++|+..|++++...| + +.+++.+|.+|..+|++++|+..|+++++.+|+++.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 456889999999999999999999999999999999999 6 889999999999999999999999999999987654
Q ss_pred HhhhhhhhhhHhhhHHH--------hhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH------------
Q 002100 622 FYGQLHGDNLVETLQPL--------VQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR------------ 681 (967)
Q Consensus 622 ~~~~~~~~~~~~~l~~~--------~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~------------ 681 (967)
... +.+.++.++.. .+++++| +..|+++++.+|+++...
T Consensus 88 ~~~---a~~~lg~~~~~~~~~~~~~~~~~~~A------------------~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~ 146 (261)
T 3qky_A 88 VPQ---AEYERAMCYYKLSPPYELDQTDTRKA------------------IEAFQLFIDRYPNHELVDDATQKIRELRAK 146 (261)
T ss_dssp HHH---HHHHHHHHHHHHCCCTTSCCHHHHHH------------------HHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHHHhcccccccchhHHHH------------------HHHHHHHHHHCcCchhHHHHHHHHHHHHHH
Confidence 321 12788999988 8999999 999999999999987766
Q ss_pred -----HHHHHHHHHhcCHHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHc----------CChHHHHHHHHHHHhccc
Q 002100 682 -----FRQSLLLLRLNSQKAAMRSLRLARNYSTS---EHEKLVYEGWILYDT----------GHREEALAKAEESISIQR 743 (967)
Q Consensus 682 -----~~~g~~~~~~g~~~~A~~~l~~al~~~p~---~~~a~~~lg~~~~~~----------g~~~eA~~~~~~al~~~p 743 (967)
+.+|.+|...|++++|+..|+++++..|+ .+++++.+|.++..+ |++++|+..|+++++.+|
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 88899999999999999999999999998 677999999999977 899999999999999999
Q ss_pred chH
Q 002100 744 SFE 746 (967)
Q Consensus 744 ~~~ 746 (967)
++.
T Consensus 227 ~~~ 229 (261)
T 3qky_A 227 DSP 229 (261)
T ss_dssp TCT
T ss_pred CCh
Confidence 664
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=182.21 Aligned_cols=254 Identities=11% Similarity=0.038 Sum_probs=193.9
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhcc--------CC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGF--------KV-SPDCLELRAWISIALEDYDGALRDVRALLTLD-- 616 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-- 616 (967)
.+|....++..+|.++...|++++|+..|++++++ .| ...++..+|.+|...|++++|+..+++++.+.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35667788999999999999999999999999985 45 68899999999999999999999999999883
Q ss_pred ------CCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcC--------CCChHHHH
Q 002100 617 ------PSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAND--------PGKSLLRF 682 (967)
Q Consensus 617 ------p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~--------p~~~~~~~ 682 (967)
|....++ ..++.++...+++++| +..+.++++.. |....++.
T Consensus 102 ~~~~~~~~~~~~~------~~l~~~~~~~g~~~~A------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 102 TLGKDHPAVAATL------NNLAVLYGKRGKYKEA------------------EPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp HHCTTCHHHHHHH------HHHHHHHHTTTCHHHH------------------HHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhCCCChHHHHHH------HHHHHHHHHcCcHHHH------------------HHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 3334444 7789999999999999 77787777663 55667889
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 683 RQSLLLLRLNSQKAAMRSLRLARNY--------STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 683 ~~g~~~~~~g~~~~A~~~l~~al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
.+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|+..+++++++.+... +
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~- 230 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE------F- 230 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH------H-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc------C-
Confidence 9999999999999999999999998 777888999999999999999999999999998766321 0
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH--HHHHHHHHHHHHhC
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT--RAHQGLARVYHLKN 832 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--~a~~~la~~~~~~g 832 (967)
... .+ ...........+..++..+...+.+.+|+..+++++...+. .++..+|.+|..+|
T Consensus 231 -~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g 292 (311)
T 3nf1_A 231 -GSV--DD---------------ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQG 292 (311)
T ss_dssp -C-----------------------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHT
T ss_pred -CCC--Cc---------------chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCC
Confidence 000 00 00000112245666677777888888899999998875544 48999999999999
Q ss_pred CHHHHHHHHHHHHHHccC
Q 002100 833 QRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 833 ~~~~A~~~~~~al~~~p~ 850 (967)
++++|++.|++++++.|+
T Consensus 293 ~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 293 KFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHhhc
Confidence 999999999999998874
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=201.18 Aligned_cols=171 Identities=15% Similarity=0.081 Sum_probs=163.8
Q ss_pred cCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccc
Q 002100 582 FKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDD 660 (967)
Q Consensus 582 ~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~ 660 (967)
..| +++++.++|.+|..+|++++|+..|+++++++|++..++ .++|.++...+++++|
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~------~nLg~~l~~~g~~~eA--------------- 62 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH------SNLASVLQQQGKLQEA--------------- 62 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHH------HHHHHHHHHTTCHHHH---------------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHcCCHHHH---------------
Confidence 457 789999999999999999999999999999999999999 8899999999999999
Q ss_pred cchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 661 IGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESIS 740 (967)
Q Consensus 661 ~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 740 (967)
+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++.+++.++|.+|..+|++++|+..|+++++
T Consensus 63 ---~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 63 ---LMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp ---HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC
Q 002100 741 IQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK 816 (967)
Q Consensus 741 ~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~ 816 (967)
++|++. .++.++|.++..+|++++|++.|++++++.
T Consensus 140 l~P~~~----------------------------------------~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 140 LKPDFP----------------------------------------DAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp HCSCCH----------------------------------------HHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred hCCCCh----------------------------------------HHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 999777 899999999999999999999999998743
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-16 Score=170.02 Aligned_cols=223 Identities=13% Similarity=0.065 Sum_probs=186.5
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcC--cHHHHHHHHHHHhccCC-ChhHHHHHHHHH----HHh---cCHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEEN--KLAAAITEINRIIGFKV-SPDCLELRAWIS----IAL---EDYDGA 605 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p-~~~~~~~la~~~----~~~---g~~~~A 605 (967)
++|+..+.++|.++|++..+|..++.++...+ +++++++.+++++..+| +..++..++.+. ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 78999999999999999999999999999999 99999999999999999 999999999999 777 789999
Q ss_pred HHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchh--hHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHH
Q 002100 606 LRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWS--QADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFR 683 (967)
Q Consensus 606 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~--~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~ 683 (967)
+..+.++++.+|.+..++ ..++.+....+.|+ ++ +..+.++++.+|.+..+|..
T Consensus 130 L~~~~~~l~~~pkny~aW------~~R~~vl~~l~~~~~~~E------------------L~~~~~~i~~d~~N~sAW~~ 185 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVW------SYRKWLVDTFDLHNDAKE------------------LSFVDKVIDTDLKNNSAWSH 185 (306)
T ss_dssp HHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCTTCHHH------------------HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHH------HHHHHHHHHhcccChHHH------------------HHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999 67788888888887 66 99999999999999999999
Q ss_pred HHHHHHHhcC------HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHH-HHHHHHHhcccchHHHHHHHHHhh
Q 002100 684 QSLLLLRLNS------QKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEAL-AKAEESISIQRSFEAFFLKAYALA 756 (967)
Q Consensus 684 ~g~~~~~~g~------~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~-~~~~~al~~~p~~~~~~~~~~~la 756 (967)
++.++...+. +++++..+++++..+|++..+|.+++.++...|+..+++ ..++++++++.
T Consensus 186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~------------- 252 (306)
T 3dra_A 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK------------- 252 (306)
T ss_dssp HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG-------------
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC-------------
Confidence 9999988887 899999999999999999999999999998888855533 45555554430
Q ss_pred hcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc-cCcHH
Q 002100 757 DSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN-IKHTR 819 (967)
Q Consensus 757 ~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-~~~~~ 819 (967)
..+....++..++.+|.+.|+.++|+++|+.+.+ .+|.+
T Consensus 253 ------------------------~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir 292 (306)
T 3dra_A 253 ------------------------DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIR 292 (306)
T ss_dssp ------------------------TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred ------------------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHH
Confidence 0112225667777777777777777777777664 45544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-16 Score=177.66 Aligned_cols=232 Identities=12% Similarity=0.034 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Q 002100 680 LRFRQSLLLLRLNSQKAAMRSLRLARNYST------SEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY 753 (967)
Q Consensus 680 ~~~~~g~~~~~~g~~~~A~~~l~~al~~~p------~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 753 (967)
.++.+|..+...|++++|+..|+++++..+ ..+.+++.+|.++...|++++|+..+++++++.+...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~------- 175 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP------- 175 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-------
Confidence 567889999999999999999999998742 3567899999999999999999999999998766322
Q ss_pred HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc----Cc----HHHHHHHH
Q 002100 754 ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI----KH----TRAHQGLA 825 (967)
Q Consensus 754 ~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~----~~----~~a~~~la 825 (967)
...+..+.+++++|.+|...|++++|+++|+++++. +. ..++.++|
T Consensus 176 --------------------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 229 (378)
T 3q15_A 176 --------------------------LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIA 229 (378)
T ss_dssp --------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------------------CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 001123478999999999999999999999999983 22 13889999
Q ss_pred HHHHHhCCHHHHHHHHHHHHH-----HccCCHHHHHHHHc----cCChHHHHHHHHHhhccCC-----CCchHHHHHHHH
Q 002100 826 RVYHLKNQRKAAYDEMTKLIE-----KARNNASAYEKRSE----YCDRDMAKSDLSMATQLDP-----MRTYPYRYRAAV 891 (967)
Q Consensus 826 ~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p-----~~~~~~~~la~~ 891 (967)
.+|..+|++++|+..++++++ .+|..+.++..+|. .|++++|+..+++++++.+ .....+..++.+
T Consensus 230 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~l 309 (378)
T 3q15_A 230 NSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAV 309 (378)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999 77777888888884 3999999999999999854 334456678888
Q ss_pred HHhCCC---HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 892 LMDDHK---EAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 892 ~~~~g~---~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
+...++ +.+|+..+++. ...|. ...+..+|.+|..+|++++|+..|+++++..
T Consensus 310 y~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 310 YKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 888898 88888888873 22222 3477889999999999999999999998754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-16 Score=175.67 Aligned_cols=243 Identities=11% Similarity=0.035 Sum_probs=198.5
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-------ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchH-Hhhh
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFKV-------SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMM-FYGQ 625 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~ 625 (967)
..++.+|..+...|++++|+..|++++.+.+ ...++..+|.+|..+|++++|+..+++++++.+.... ....
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 3578899999999999999999999998743 3568999999999999999999999999998654332 1111
Q ss_pred hhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCC------CChHHHHHHHHHHHHhcCHHHHHH
Q 002100 626 LHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDP------GKSLLRFRQSLLLLRLNSQKAAMR 699 (967)
Q Consensus 626 ~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p------~~~~~~~~~g~~~~~~g~~~~A~~ 699 (967)
......+|.++...++|++| +..+.++++..+ ....++.++|.+|..+|++++|+.
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKA------------------LPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHH------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 22337889999999999999 788888877532 234578899999999999999999
Q ss_pred HHHHHHh-----cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHH
Q 002100 700 SLRLARN-----YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEE 774 (967)
Q Consensus 700 ~l~~al~-----~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~ 774 (967)
.|+++++ .+|..+.++..+|.++..+|++++|+..+++++++.+...
T Consensus 244 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------- 295 (378)
T 3q15_A 244 HFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS---------------------------- 295 (378)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC----------------------------
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----------------------------
Confidence 9999999 8888899999999999999999999999999998765221
Q ss_pred HhcCCCCCCchHHHHHHhHHHHHhccc---HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc
Q 002100 775 ALRCPSDGLRKGQALNNLGSVYVDCEK---LDLAADCYMNALNI-KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKAR 849 (967)
Q Consensus 775 ~~~~~~~~~~~~~a~~~lg~~~~~~g~---~~~A~~~~~~Al~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 849 (967)
.+.....+..++.+|...++ +.+|+..+++.-.. ....++..+|.+|..+|++++|...|+++++...
T Consensus 296 -------~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 296 -------HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp -------CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 11222356778888888888 88899888874332 2233788899999999999999999999998654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.8e-18 Score=182.65 Aligned_cols=242 Identities=14% Similarity=0.032 Sum_probs=182.5
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch
Q 002100 674 DPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY--------STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF 745 (967)
Q Consensus 674 ~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 745 (967)
+|.....+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++.+....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4667788999999999999999999999999984 67788899999999999999999999999999764211
Q ss_pred HHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--------c
Q 002100 746 EAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--------H 817 (967)
Q Consensus 746 ~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--------~ 817 (967)
. ..+.+....++.++|.+|...|++++|+.+|+++++.. +
T Consensus 103 ~--------------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 103 L--------------------------------GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp H--------------------------------CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred h--------------------------------CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 0 00112334788899999999999999999999998742 2
Q ss_pred H--HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------ccCCHHHHHHHHcc----CChHHHHHHHHHhhcc------
Q 002100 818 T--RAHQGLARVYHLKNQRKAAYDEMTKLIEK--------ARNNASAYEKRSEY----CDRDMAKSDLSMATQL------ 877 (967)
Q Consensus 818 ~--~a~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l------ 877 (967)
. .++..+|.++...|++++|+..++++++. .|....++..++.. |++++|+..|+++++.
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 2 37888999999999999999999999988 56666677777742 8999999999998864
Q ss_pred ---CCCCchHHHHHHH------HHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002100 878 ---DPMRTYPYRYRAA------VLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPN 947 (967)
Q Consensus 878 ---~p~~~~~~~~la~------~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~ 947 (967)
++.....+...+. .+...+.+.+|+..+.+++...|. ..++..+|.+|..+|++++|+..|++++++.|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 3444444444443 344446677777788888877777 458999999999999999999999999999875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=8.5e-17 Score=174.65 Aligned_cols=219 Identities=11% Similarity=-0.006 Sum_probs=173.8
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHH
Q 002100 693 SQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLL 772 (967)
Q Consensus 693 ~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~l 772 (967)
++++|+..|+++ |.++...|++++|+..|++++++.+...
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------- 71 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAG-------------------------- 71 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT--------------------------
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC--------------------------
Confidence 588999988887 6678889999999999999997765211
Q ss_pred HHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--------HHHHHHHHHHHHHh-CCHHHHHHHHHH
Q 002100 773 EEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH--------TRAHQGLARVYHLK-NQRKAAYDEMTK 843 (967)
Q Consensus 773 e~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--------~~a~~~la~~~~~~-g~~~~A~~~~~~ 843 (967)
+.+..+.++.++|.+|..+|++++|+.+|++|+++.+ ..++.++|.+|..+ |++++|+..|++
T Consensus 72 --------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 72 --------NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 0112246889999999999999999999999998432 23788999999996 999999999999
Q ss_pred HHHHccCC------HHHHHHHHc----cCChHHHHHHHHHhhccCCCCch-------HHHHHHHHHHhCCCHHHHHHHHH
Q 002100 844 LIEKARNN------ASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTY-------PYRYRAAVLMDDHKEAEAIAELS 906 (967)
Q Consensus 844 al~~~p~~------~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~-------~~~~la~~~~~~g~~~eAi~~~~ 906 (967)
+++..|.. ..++..+|. .|++++|+..|++++++.|++.. ++.++|.++...|++++|+..|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99998864 456777774 39999999999999999988754 57889999999999999999999
Q ss_pred HHHhcCCChH------HHHHHHHHHH--HcCChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 002100 907 RAIAFKPDLQ------LLHLRAAFHD--SMGDHLHTQRDCEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 907 kal~~~p~~~------~~~~~a~~~~--~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~ 959 (967)
++++++|+.. .+..++..+. ..+++++|+..|++++.++|.+..++.-..+.-
T Consensus 224 ~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp GGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 9999999832 3444556554 467899999999999999998776655444433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-17 Score=172.46 Aligned_cols=203 Identities=15% Similarity=0.087 Sum_probs=139.3
Q ss_pred cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchH
Q 002100 707 YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKG 786 (967)
Q Consensus 707 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~ 786 (967)
..|.+++.++.+|..++..|++++|+..|+++++.+|++. ...
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-------------------------------------~~~ 52 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE-------------------------------------WAA 52 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST-------------------------------------THH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc-------------------------------------chH
Confidence 3455555666666666666666666666666665555331 112
Q ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHhccCc-----HHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHccCCHH
Q 002100 787 QALNNLGSVYVDCEKLDLAADCYMNALNIKH-----TRAHQGLARVYHL--------KNQRKAAYDEMTKLIEKARNNAS 853 (967)
Q Consensus 787 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~-----~~a~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~ 853 (967)
.+++.+|.+|...|++++|+..|+++++..| ..+++.+|.+++. +|++++|+..|+++++.+|++..
T Consensus 53 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 132 (261)
T 3qky_A 53 DAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL 132 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh
Confidence 4556666666666666666666666665322 2366667777777 88888888888888888887654
Q ss_pred HHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHc-
Q 002100 854 AYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL----QLLHLRAAFHDSM- 928 (967)
Q Consensus 854 ~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~----~~~~~~a~~~~~~- 928 (967)
+...+.. ...+.+.....++.+|.+|...|++++|+..|+++++..|+. .+++.+|.+|..+
T Consensus 133 ~~~a~~~-------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g 199 (261)
T 3qky_A 133 VDDATQK-------------IRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA 199 (261)
T ss_dssp HHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence 4433321 111112223447899999999999999999999999999982 4899999999987
Q ss_pred ---------CChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 002100 929 ---------GDHLHTQRDCEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 929 ---------g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~ 959 (967)
|++++|+..|+++++.+|+++.+......+.
T Consensus 200 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 239 (261)
T 3qky_A 200 EQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT 239 (261)
T ss_dssp HTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred ccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 9999999999999999999976655444443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.8e-17 Score=197.14 Aligned_cols=172 Identities=12% Similarity=0.011 Sum_probs=163.0
Q ss_pred hhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHh--------ccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 002100 547 ELDPTLSYPYKYRAILLVEENKLAAAITEINRII--------GFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDP 617 (967)
Q Consensus 547 ~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 617 (967)
.++|+++.+++..| ...|++++|++.|++++ +.+| +..+++.+|.++..+|++++|+..|+++++++|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 56899998888877 88999999999999999 8889 899999999999999999999999999999999
Q ss_pred CchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHH
Q 002100 618 SYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAA 697 (967)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A 697 (967)
++..++ +.++.++...+++++| +..|+++++.+|+++.+++.+|.++..+|++++
T Consensus 465 ~~~~a~------~~lg~~~~~~g~~~~A------------------~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~- 519 (681)
T 2pzi_A 465 WRWRLV------WYRAVAELLTGDYDSA------------------TKHFTEVLDTFPGELAPKLALAATAELAGNTDE- 519 (681)
T ss_dssp CCHHHH------HHHHHHHHHHTCHHHH------------------HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-
T ss_pred chHHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-
Confidence 999999 8889999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 698 MRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 698 ~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
+..|+++++.+|++..+++++|.++..+|++++|+..|+++++++|++.
T Consensus 520 ~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 568 (681)
T 2pzi_A 520 HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFT 568 (681)
T ss_dssp TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccH
Confidence 9999999999999999999999999999999999999999999999776
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-16 Score=168.72 Aligned_cols=229 Identities=11% Similarity=0.069 Sum_probs=203.4
Q ss_pred CcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhH----HHh
Q 002100 567 NKLAAAITEINRIIGFKV-SPDCLELRAWISIALE--DYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQ----PLV 639 (967)
Q Consensus 567 g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~----~~~ 639 (967)
...++|+..++++|.++| +..++..++.+...++ ++++++..+.+++..+|++..++ +.++.+. ...
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW------~~R~~iL~~~~~~l 120 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIW------NYRQLIIGQIMELN 120 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHH------HHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHH------HHHHHHHHHHHHhc
Confidence 344689999999999999 8999999999999999 99999999999999999999999 5555555 443
Q ss_pred ---hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH--HHHHHHHHHHhcCCchhHH
Q 002100 640 ---QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQK--AAMRSLRLARNYSTSEHEK 714 (967)
Q Consensus 640 ---~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~--~A~~~l~~al~~~p~~~~a 714 (967)
++++++ +..+.++++.+|++..+|..++.++...+.++ +++..++++++.+|.+..+
T Consensus 121 ~~~~~~~~E------------------L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sA 182 (306)
T 3dra_A 121 NNDFDPYRE------------------FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSA 182 (306)
T ss_dssp TTCCCTHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHH
T ss_pred cccCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHH
Confidence 455555 99999999999999999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHHcCC------hHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHH
Q 002100 715 LVYEGWILYDTGH------REEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQA 788 (967)
Q Consensus 715 ~~~lg~~~~~~g~------~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a 788 (967)
|.+.+.++...++ ++++++.+++++.++|++. .+
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~----------------------------------------Sa 222 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNP----------------------------------------ST 222 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCH----------------------------------------HH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCc----------------------------------------cH
Confidence 9999999999988 9999999999999999777 79
Q ss_pred HHHhHHHHHhcccHHH-HHHHHHHHhccC-----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HccCCHHHHHHHH
Q 002100 789 LNNLGSVYVDCEKLDL-AADCYMNALNIK-----HTRAHQGLARVYHLKNQRKAAYDEMTKLIE-KARNNASAYEKRS 859 (967)
Q Consensus 789 ~~~lg~~~~~~g~~~~-A~~~~~~Al~~~-----~~~a~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~ 859 (967)
|+.++.++...|+..+ ...++.++++.+ ...++..+|.++.+.|+.++|++.|+.+++ .+|-....|..++
T Consensus 223 W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 223 WNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 9999999999888555 455777777644 567999999999999999999999999997 6898888877765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-16 Score=191.87 Aligned_cols=242 Identities=17% Similarity=0.073 Sum_probs=193.1
Q ss_pred hcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH--------hcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 672 ANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLAR--------NYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 672 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al--------~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
..+|.++..++..+ ...|++++|+..|++++ +.+|++.++++.+|.++..+|++++|+..|+++++++|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 46788888887766 78999999999999999 99999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--cHHHH
Q 002100 744 SFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--HTRAH 821 (967)
Q Consensus 744 ~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~ 821 (967)
++. .+++++|.+|...|++++|+..|+++++.+ ...++
T Consensus 465 ~~~----------------------------------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 504 (681)
T 2pzi_A 465 WRW----------------------------------------RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPK 504 (681)
T ss_dssp CCH----------------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred chH----------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 776 899999999999999999999999999955 45699
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK 897 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~ 897 (967)
.++|.++..+|++++ +..|+++++.+|++..+|+.+|. .|++++|+..|+++++++|++..++.++|.++...++
T Consensus 505 ~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 505 LALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999 99999999999999999999994 3999999999999999999999999999999988666
Q ss_pred --------HHHHHHHHHHHHhcCCChHHHHHHHHH------HHHcCC----------------hHHHHHHHHHHHhcCCC
Q 002100 898 --------EAEAIAELSRAIAFKPDLQLLHLRAAF------HDSMGD----------------HLHTQRDCEAALCLDPN 947 (967)
Q Consensus 898 --------~~eAi~~~~kal~~~p~~~~~~~~a~~------~~~~g~----------------~~~A~~~~~~al~~~P~ 947 (967)
+++|+..+.+.....|.. ...++.+ ....++ ...+.+.|++.....|.
T Consensus 584 ~~~~~~~~~~~A~~~l~~~~~~~~~~--~~l~~~ll~~~l~~~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~ 661 (681)
T 2pzi_A 584 TSEVTEEQIRDAARRVEALPPTEPRV--LQIRALVLGGALDWLKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPT 661 (681)
T ss_dssp ---CCHHHHHHHHHHHHTSCTTSTTH--HHHHHHHHHHHHHHHTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHhhCCCCcHHH--HHHHHHHHHHHHHHHHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCC
Confidence 444444333332223332 1111111 122221 14477788888888888
Q ss_pred chhHHHHHHHHH
Q 002100 948 HTDTLELYDKAT 959 (967)
Q Consensus 948 ~~~~l~l~~r~~ 959 (967)
..+-..+..+++
T Consensus 662 ~~~r~~lvd~a~ 673 (681)
T 2pzi_A 662 QRHRYTLVDMAN 673 (681)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHhc
Confidence 765444444443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-15 Score=170.93 Aligned_cols=311 Identities=11% Similarity=-0.058 Sum_probs=231.6
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C-h----hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhh
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFKV-S-P----DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLH 627 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~-~----~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 627 (967)
.++..+|.++...|++++|+..+++++...| . + .++..+|.++...|++++|+..+++++.+.|..........
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 4567788889999999999999999998877 2 2 26788899999999999999999999988665443332222
Q ss_pred hhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcC--------CCChHHHHHHHHHHHHhcCHHHHHH
Q 002100 628 GDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAND--------PGKSLLRFRQSLLLLRLNSQKAAMR 699 (967)
Q Consensus 628 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~--------p~~~~~~~~~g~~~~~~g~~~~A~~ 699 (967)
....++.++...|++++| +..+.++++.. |.....+..+|.++...|++++|+.
T Consensus 95 ~~~~la~~~~~~G~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTA------------------WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 156 (373)
T ss_dssp HHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHH------------------HHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 336778888889999988 77777777653 3345577889999999999999999
Q ss_pred HHHHHHhcCCc-----hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHH
Q 002100 700 SLRLARNYSTS-----EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEE 774 (967)
Q Consensus 700 ~l~~al~~~p~-----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~ 774 (967)
.+++++...+. ...++..+|.++...|++++|+..+++++.+.+...
T Consensus 157 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~---------------------------- 208 (373)
T 1hz4_A 157 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK---------------------------- 208 (373)
T ss_dssp HHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC----------------------------
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC----------------------------
Confidence 99999988764 245788999999999999999999999987644211
Q ss_pred HhcCCCCCCc--hHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002100 775 ALRCPSDGLR--KGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT------RAHQGLARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 775 ~~~~~~~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~------~a~~~la~~~~~~g~~~~A~~~~~~al~ 846 (967)
.+. .......++.++...|++++|...+++++.+.+. ..+..+|.++...|++++|...++++++
T Consensus 209 -------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 209 -------YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000 0011223456688999999999999999985432 2678899999999999999999999988
Q ss_pred HccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 002100 847 KARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHD 926 (967)
Q Consensus 847 ~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~ 926 (967)
..+... . .+....++..+|.++...|++++|...++++++..+... ....+.
T Consensus 282 ~~~~~~----------~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g----~~~~~~ 333 (373)
T 1hz4_A 282 NARSLR----------L--------------MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG----FISHFV 333 (373)
T ss_dssp HHHHTT----------C--------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC----CCHHHH
T ss_pred HHHhCc----------c--------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc----HHHHHH
Confidence 655210 0 001123566788889999999999999999987654321 111222
Q ss_pred HcCChHHHHHHHHHHHhcCCC
Q 002100 927 SMGDHLHTQRDCEAALCLDPN 947 (967)
Q Consensus 927 ~~g~~~~A~~~~~~al~~~P~ 947 (967)
..| +.....+++.+...|-
T Consensus 334 ~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 334 IEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp TTH--HHHHHHHHHHHHTTCS
T ss_pred Hcc--HHHHHHHHHHHhCCCC
Confidence 233 5667777888888775
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-15 Score=168.39 Aligned_cols=278 Identities=13% Similarity=0.019 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchh-------HHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHH
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIY-------SLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQ 527 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~-------a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~ 527 (967)
..+.++..+|.+++..|++++|+..+++++...+.. +...++.++...|++
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~---------------------- 69 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGEL---------------------- 69 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCH----------------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcH----------------------
Confidence 345677889999999999999999999999985421 223334444444444
Q ss_pred HHhhcCChHHHHHHHHHhHhhCCCCc------hhHHHHHHHHHhcCcHHHHHHHHHHHhccC--------C-ChhHHHHH
Q 002100 528 ERSLYCSGKEKMMDLNTATELDPTLS------YPYKYRAILLVEENKLAAAITEINRIIGFK--------V-SPDCLELR 592 (967)
Q Consensus 528 ~~~~y~~~~~A~~~~~~al~l~P~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p-~~~~~~~l 592 (967)
++|+..+++++++.|... .++..+|.++...|++++|+..+++++... | ...++..+
T Consensus 70 --------~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 141 (373)
T 1hz4_A 70 --------TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 141 (373)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHH
Confidence 556666666655544332 346789999999999999999999999865 3 34577889
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHh
Q 002100 593 AWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLA 672 (967)
Q Consensus 593 a~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~ 672 (967)
|.++...|++++|...+++++...|...... .......++.++...+++++| +..+.+++.
T Consensus 142 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A------------------~~~l~~a~~ 202 (373)
T 1hz4_A 142 AQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNA------------------RSQLNRLEN 202 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHH------------------HHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHH
Confidence 9999999999999999999999877542211 111236788899999999999 777877776
Q ss_pred cCC--CChHHHH-----HHHHHHHHhcCHHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 673 NDP--GKSLLRF-----RQSLLLLRLNSQKAAMRSLRLARNYSTSE----HEKLVYEGWILYDTGHREEALAKAEESISI 741 (967)
Q Consensus 673 ~~p--~~~~~~~-----~~g~~~~~~g~~~~A~~~l~~al~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 741 (967)
..+ ..+..+. .++.++...|++++|...+++++...|.. ...+..+|.++...|++++|+..+++++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 203 LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 532 2211111 34455778888888888888888766543 234567788888888888888888888755
Q ss_pred ccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc
Q 002100 742 QRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI 815 (967)
Q Consensus 742 ~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~ 815 (967)
.+... .......++..+|.++...|++++|...|++++..
T Consensus 283 ~~~~~----------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 283 ARSLR----------------------------------LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHTT----------------------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCc----------------------------------chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44111 00011135566677777777777777777777653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-16 Score=159.98 Aligned_cols=174 Identities=12% Similarity=0.023 Sum_probs=149.3
Q ss_pred HHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHH----------------HHHHHHHhCCHHHHHHHHHHHHHH
Q 002100 786 GQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQG----------------LARVYHLKNQRKAAYDEMTKLIEK 847 (967)
Q Consensus 786 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~----------------la~~~~~~g~~~~A~~~~~~al~~ 847 (967)
...+...|..+...|++++|+.+|+++++.+|.+ +++. +|.++..+|++++|+..|+++++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3577889999999999999999999999976654 7888 999999999999999999999999
Q ss_pred ccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC--HHHHHHHHHHHHhcCCChHHHHHH
Q 002100 848 ARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK--EAEAIAELSRAIAFKPDLQLLHLR 921 (967)
Q Consensus 848 ~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~--~~eAi~~~~kal~~~p~~~~~~~~ 921 (967)
+|++..++..+|.. |++++|+..|+++++++|+++.++.++|.+|...|+ ...+...+.+++...|...+++.+
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 163 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 99999999999953 999999999999999999999999999999987654 566778888887544444478889
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 002100 922 AAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 922 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~ 960 (967)
|.++..+|++++|+..|++|++++|++. +...+.++.+
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i~~ 201 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKILR 201 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHHHH
Confidence 9999999999999999999999999854 4455555543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-16 Score=169.08 Aligned_cols=218 Identities=11% Similarity=-0.037 Sum_probs=173.5
Q ss_pred hHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-------ChhHHHHHHHHHHHhcCHHHHHH
Q 002100 535 GKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-------SPDCLELRAWISIALEDYDGALR 607 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~la~~~~~~g~~~~A~~ 607 (967)
+++|+..|+++ |.+|...|++++|+..|++++.+.+ ...++..+|.+|..+|++++|+.
T Consensus 33 ~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 98 (292)
T 1qqe_A 33 FEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98 (292)
T ss_dssp HHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 38888888887 5678899999999999999998854 25689999999999999999999
Q ss_pred HHHHHHHhCCCchHHhhhhhhhhhHhhhHHHh-hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCC------hHH
Q 002100 608 DVRALLTLDPSYMMFYGQLHGDNLVETLQPLV-QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGK------SLL 680 (967)
Q Consensus 608 ~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~-~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~------~~~ 680 (967)
.|++++++.|..............++.++... +++++| +..|+++++..|.. ...
T Consensus 99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A------------------~~~~~~Al~~~~~~~~~~~~~~~ 160 (292)
T 1qqe_A 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKA------------------IDCYELAGEWYAQDQSVALSNKC 160 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHH------------------HHHHHHHHHHHHhCCChHHHHHH
Confidence 99999999775432221112236788999995 999999 99999999988754 456
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhH-------HHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Q 002100 681 RFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHE-------KLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY 753 (967)
Q Consensus 681 ~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~-------a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 753 (967)
+..+|.++..+|++++|+..|+++++..|++.. ++..+|.++..+|++++|+..|+++++++|++..
T Consensus 161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~------ 234 (292)
T 1qqe_A 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD------ 234 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC------
Confidence 889999999999999999999999999987643 5788999999999999999999999999996550
Q ss_pred HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHH--hcccHHHHHHHHHHHhccCcHH
Q 002100 754 ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYV--DCEKLDLAADCYMNALNIKHTR 819 (967)
Q Consensus 754 ~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~--~~g~~~~A~~~~~~Al~~~~~~ 819 (967)
......+..++..+. ..+++++|+..|++++.+++..
T Consensus 235 -----------------------------~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 235 -----------------------------SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp --------------------------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred -----------------------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 011134455555554 5678999999999999888765
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.8e-17 Score=178.90 Aligned_cols=326 Identities=9% Similarity=0.011 Sum_probs=174.4
Q ss_pred hHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 535 GKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
.++|.+.+++. +.+.+|..+|.++...|++++|++.|.++ +++..+...+..+...|++++|+..++.+.+
T Consensus 19 ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 19 LDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 47888888877 33469999999999999999999999764 4677889999999999999999999998887
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQ 694 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~ 694 (967)
..++ +... ..+..+|...+++.++. ..+. .| +...+..+|..+...|.|
T Consensus 90 ~~~~-~~i~------~~Li~~Y~Klg~l~e~e------------------~f~~-----~p-n~~a~~~IGd~~~~~g~y 138 (449)
T 1b89_A 90 KARE-SYVE------TELIFALAKTNRLAELE------------------EFIN-----GP-NNAHIQQVGDRCYDEKMY 138 (449)
T ss_dssp --------------------------CHHHHT------------------TTTT-----CC-----------------CT
T ss_pred hCcc-chhH------HHHHHHHHHhCCHHHHH------------------HHHc-----CC-cHHHHHHHHHHHHHcCCH
Confidence 5433 3333 44567788888888872 2221 23 345899999999999999
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHH
Q 002100 695 KAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEE 774 (967)
Q Consensus 695 ~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~ 774 (967)
++|...|.++ ..+..+|.++.++|++++|++.++++. +|
T Consensus 139 eeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~------------------------------- 177 (449)
T 1b89_A 139 DAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--ST------------------------------- 177 (449)
T ss_dssp TTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CH-------------------------------
T ss_pred HHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--Cc-------------------------------
Confidence 9999999976 478899999999999999999999983 33
Q ss_pred HhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHH
Q 002100 775 ALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASA 854 (967)
Q Consensus 775 ~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 854 (967)
..|..+..++...|+++.|..+..+ +.. +++-...+...|.+.|++++|+..+++++..++....+
T Consensus 178 ------------~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~-~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ 243 (449)
T 1b89_A 178 ------------RTWKEVCFACVDGKEFRLAQMCGLH-IVV-HADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 243 (449)
T ss_dssp ------------HHHHHHHHHHHHTTCHHHHHHTTTT-TTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHH
T ss_pred ------------hhHHHHHHHHHHcCcHHHHHHHHHH-HHh-CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHH
Confidence 6788889999999999999888775 333 33445568899999999999999999999999999999
Q ss_pred HHHHHcc------CChHHHHHHHHHhhccCC-----CCchHHHHHHHHHHhCCCHHHHHHHHHHHHh-------------
Q 002100 855 YEKRSEY------CDRDMAKSDLSMATQLDP-----MRTYPYRYRAAVLMDDHKEAEAIAELSRAIA------------- 910 (967)
Q Consensus 855 ~~~~~~~------~~~~~A~~~l~~al~l~p-----~~~~~~~~la~~~~~~g~~~eAi~~~~kal~------------- 910 (967)
+..++.. ++..+.+..|...+.+.| .....|..+..+|.+.++++.|+...-+...
T Consensus 244 ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~ 323 (449)
T 1b89_A 244 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT 323 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHh
Confidence 9999842 677888889998999988 8999999999999999999999875544322
Q ss_pred cCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 002100 911 FKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDK 957 (967)
Q Consensus 911 ~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r 957 (967)
.-.+.+.++....+|. +....++.++..++.-.-++..+..++.+
T Consensus 324 kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 324 KVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 2233567777666666 66777788888888555555566555544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=177.11 Aligned_cols=334 Identities=13% Similarity=0.066 Sum_probs=189.0
Q ss_pred HHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHH
Q 002100 525 MYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDG 604 (967)
Q Consensus 525 ~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~ 604 (967)
.+...+.| ++|+..++.+.+..++ +.....++.+|.+.|++.++.+.++ .|+..++..+|..+...|.|++
T Consensus 70 ~ae~~g~~---EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 70 AANTSGNW---EELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp -------------------------------------------CHHHHTTTTT-----CC----------------CTTT
T ss_pred HHHhCCCH---HHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHH
Confidence 34444444 7777777777765333 5666777778888888888776664 3555688888888888888888
Q ss_pred HHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHH
Q 002100 605 ALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQ 684 (967)
Q Consensus 605 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~ 684 (967)
|+..|.++ ..+ ..++.++..+++|+.| ++.+.++ .++..|...
T Consensus 141 A~~~Y~~a--------~n~------~~LA~~L~~Lg~yq~A------------------Vea~~KA-----~~~~~Wk~v 183 (449)
T 1b89_A 141 AKLLYNNV--------SNF------GRLASTLVHLGEYQAA------------------VDGARKA-----NSTRTWKEV 183 (449)
T ss_dssp HHHHHHHT--------TCH------HHHHHHHHTTTCHHHH------------------HHHHHHH-----TCHHHHHHH
T ss_pred HHHHHHHh--------hhH------HHHHHHHHHhccHHHH------------------HHHHHHc-----CCchhHHHH
Confidence 88888766 123 4457778888888887 7777777 356777777
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCc
Q 002100 685 SLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPES 764 (967)
Q Consensus 685 g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~ 764 (967)
..+....|+++.|..+... +...|++ +..+...|.+.|++++|+..+++++.+++...
T Consensus 184 ~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~------------------ 241 (449)
T 1b89_A 184 CFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHM------------------ 241 (449)
T ss_dssp HHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH------------------
T ss_pred HHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHH------------------
Confidence 8888888888888776654 3355544 44577788888999999999999988887554
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHH--hcccHHHHHHHHHHHhccCc-------HHHHHHHHHHHHHhCCHH
Q 002100 765 SAYVIQLLEEALRCPSDGLRKGQALNNLGSVYV--DCEKLDLAADCYMNALNIKH-------TRAHQGLARVYHLKNQRK 835 (967)
Q Consensus 765 ~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~--~~g~~~~A~~~~~~Al~~~~-------~~a~~~la~~~~~~g~~~ 835 (967)
.++..+|.+|. ..++..+.++.|...+.+.+ ...|..+..+|...++++
T Consensus 242 ----------------------~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 242 ----------------------GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp ----------------------HHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred ----------------------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 45666666654 45677788888877777544 236778888888888888
Q ss_pred HHHHHHHHHHHH------------ccCCHHHHHHHHcc--CChHHHHHHHHHhh--ccCCCCchHHHHHHHHHHhCCCHH
Q 002100 836 AAYDEMTKLIEK------------ARNNASAYEKRSEY--CDRDMAKSDLSMAT--QLDPMRTYPYRYRAAVLMDDHKEA 899 (967)
Q Consensus 836 ~A~~~~~~al~~------------~p~~~~~~~~~~~~--~~~~~A~~~l~~al--~l~p~~~~~~~~la~~~~~~g~~~ 899 (967)
.|...+-.-... .+.+.+.|+....+ ++...++.++..++ ++|++.. -..+.+.|+..
T Consensus 300 ~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~------v~~~~~~~~l~ 373 (449)
T 1b89_A 300 NAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRA------VNYFSKVKQLP 373 (449)
T ss_dssp HHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHH------HHHHHHTTCTT
T ss_pred HHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHH------HHHHHHcCCcH
Confidence 888766543322 45567777766643 67777888888888 6666422 23456668877
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 002100 900 EAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 900 eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~ 960 (967)
-...++..+...+ ...+-..+-.+|....|++.= +..++..- +-+.+.+-+|+++
T Consensus 374 l~~~yl~~v~~~n-~~~vnealn~l~ieeed~~~l----r~si~~~~-nfd~~~l~~~le~ 428 (449)
T 1b89_A 374 LVKPYLRSVQNHN-NKSVNESLNNLFITEEDYQAL----RTSIDAYD-NFDNISLAQRLEK 428 (449)
T ss_dssp TTHHHHHHHHTTC-CHHHHHHHHHHHHHTTCHHHH----HHHHHHCC-CSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh-HHHHHHHHHHHHHhhhhHHHH----HHHHHHhc-CcCHHHHHHHHhc
Confidence 7777776655443 233444556778888898753 44444433 3344555666554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.1e-16 Score=158.28 Aligned_cols=185 Identities=14% Similarity=0.031 Sum_probs=140.2
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchH
Q 002100 585 SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSL 664 (967)
Q Consensus 585 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al 664 (967)
+.+.++.+|..+...|++++|+..|+++++.+|++..++. ..+.. .. .
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------~~~~~--------~~------------------~ 50 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYY------WTNVD--------KN------------------S 50 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHH------HHHSC--------TT------------------S
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHH------Hhhhc--------ch------------------h
Confidence 3556778888888888888888888888888888877662 11100 00 0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccc
Q 002100 665 AVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRS 744 (967)
Q Consensus 665 ~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 744 (967)
. ..+.+.+.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+
T Consensus 51 ~----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 51 E----------ISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp H----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred h----------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 0 012345668888888888888888888888888888888888888888888888888888888888887
Q ss_pred hHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhccc--HHHHHHHHHHHhccCcHH-HH
Q 002100 745 FEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEK--LDLAADCYMNALNIKHTR-AH 821 (967)
Q Consensus 745 ~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~--~~~A~~~~~~Al~~~~~~-a~ 821 (967)
+. .+++++|.+|...++ .+.+...|++++.+.+.. ++
T Consensus 121 ~~----------------------------------------~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 160 (208)
T 3urz_A 121 NL----------------------------------------AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYAR 160 (208)
T ss_dssp CH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHH
T ss_pred CH----------------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHH
Confidence 66 788888888876654 456777888887766554 77
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCC
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNN 851 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 851 (967)
+.+|.++...|++++|+..|+++++.+|+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 788888888888888888888888888864
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.67 E-value=6.1e-13 Score=158.99 Aligned_cols=442 Identities=10% Similarity=-0.029 Sum_probs=279.6
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchh--HHHHHHHHHHhcCC---hHHHHHHHHHHHhcc
Q 002100 445 RLVESATESWQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIY--SLVGVARTKFKRGH---KYSAYKLMNSLISDY 519 (967)
Q Consensus 445 ~l~~~~~~~~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~--a~~~la~~~~~~g~---~~~A~~~l~~~i~~~ 519 (967)
.+.+....+|.+...|..+.......++++.|...|++++...|.. .|...+....+.|+ ...+..+|++++...
T Consensus 54 ~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~ 133 (679)
T 4e6h_A 54 KLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE 133 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhc
Confidence 3444555677788889889888888999999999999999998843 34444555566677 788888888888877
Q ss_pred C--cchhHHHHHh----hcCCh----HHH----HHHHHHhHhh----CCCCchhHHHHHHHHH---------hcCcHHHH
Q 002100 520 T--PVGWMYQERS----LYCSG----KEK----MMDLNTATEL----DPTLSYPYKYRAILLV---------EENKLAAA 572 (967)
Q Consensus 520 ~--~~g~~~~~~~----~y~~~----~~A----~~~~~~al~l----~P~~~~~~~~la~~~~---------~~g~~~~A 572 (967)
+ +...+....- ..++. +++ .+.|+.|+.. +|.....|........ .+++++.+
T Consensus 134 ~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~ 213 (679)
T 4e6h_A 134 LGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYI 213 (679)
T ss_dssp SCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHH
Confidence 2 2222211111 11111 223 3566666653 4544445544433322 23456677
Q ss_pred HHHHHHHhccCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHH
Q 002100 573 ITEINRIIGFKV--SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQ 650 (967)
Q Consensus 573 ~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~ 650 (967)
...|++++.+ | +.+-++..-..+...-+...|... +.....+|+.|..+..
T Consensus 214 R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~--------------------------~~e~~~~y~~Ar~~~~ 266 (679)
T 4e6h_A 214 RKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRH--------------------------IGELSAQYMNARSLYQ 266 (679)
T ss_dssp HHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHH--------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHH--------------------------HHHhhHHHHHHHHHHH
Confidence 7777777754 4 222111111111100000001110 1111122332311111
Q ss_pred HHhhh-ccccccchHHHHHHH-----HhcCCC----C-hHHHHHHHHHHHHhcC---------HHHHHHHHHHHHhcCCc
Q 002100 651 LYDRW-SSVDDIGSLAVVHHM-----LANDPG----K-SLLRFRQSLLLLRLNS---------QKAAMRSLRLARNYSTS 710 (967)
Q Consensus 651 l~~~~-~~~d~~~al~~~~~~-----l~~~p~----~-~~~~~~~g~~~~~~g~---------~~~A~~~l~~al~~~p~ 710 (967)
..... ...+. . +... ...-|. . ..+..-...+-+...+ .+.....|++++...|.
T Consensus 267 e~~~~~~~l~r--~---~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~ 341 (679)
T 4e6h_A 267 DWLNITKGLKR--N---LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF 341 (679)
T ss_dssp HHHHHTTTCCC--C---CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhHhh--c---cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC
Confidence 00000 00000 0 0000 000010 0 0011111111111111 23456688899999999
Q ss_pred hhHHHHHHHHHHHHcCChHHHH-HHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHH
Q 002100 711 EHEKLVYEGWILYDTGHREEAL-AKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQAL 789 (967)
Q Consensus 711 ~~~a~~~lg~~~~~~g~~~eA~-~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~ 789 (967)
+++.|+..+..+...|+.++|. ..|++|+...|... ..+
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~----------------------------------------~Lw 381 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA----------------------------------------VLA 381 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH----------------------------------------HHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH----------------------------------------HHH
Confidence 9999999999888889888886 99999988877544 566
Q ss_pred HHhHHHHHhcccHHHHHHHHHHHhccC-----------c-------------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002100 790 NNLGSVYVDCEKLDLAADCYMNALNIK-----------H-------------TRAHQGLARVYHLKNQRKAAYDEMTKLI 845 (967)
Q Consensus 790 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-----------~-------------~~a~~~la~~~~~~g~~~~A~~~~~~al 845 (967)
..++......|++++|.+.|+++++.- | ..+|...++.....|+.+.|...|.+++
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777788888888889998888888621 1 2368888888888999999999999999
Q ss_pred HH-ccCCHHHHHHHHcc-----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---h-
Q 002100 846 EK-ARNNASAYEKRSEY-----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD---L- 915 (967)
Q Consensus 846 ~~-~p~~~~~~~~~~~~-----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~---~- 915 (967)
+. .+....+|...+.. ++.+.|...|+.+++..|+++..+...+......|+.+.|...|++++...|+ .
T Consensus 462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 98 44456666655522 45899999999999999999999988898888899999999999999999884 2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 002100 916 QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKA 958 (967)
Q Consensus 916 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~ 958 (967)
..+.....+-...|+.+.+.+.++++++..|+++.+.-+..|-
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHh
Confidence 3677778888899999999999999999999998776665553
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9.3e-16 Score=164.09 Aligned_cols=229 Identities=15% Similarity=0.078 Sum_probs=162.2
Q ss_pred hHHHHHHHHh-------cC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHcC
Q 002100 663 SLAVVHHMLA-------ND-PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY--------STSEHEKLVYEGWILYDTG 726 (967)
Q Consensus 663 al~~~~~~l~-------~~-p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~--------~p~~~~a~~~lg~~~~~~g 726 (967)
|+..++++++ .+ |....++..+|.++...|++++|+..++++++. .|....++..+|.++...|
T Consensus 20 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 99 (283)
T 3edt_B 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99 (283)
T ss_dssp HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc
Confidence 3566665555 23 667788999999999999999999999999977 4677889999999999999
Q ss_pred ChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHH
Q 002100 727 HREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAA 806 (967)
Q Consensus 727 ~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~ 806 (967)
++++|+..+++++.+..... ..+.+....++.++|.+|...|++++|+
T Consensus 100 ~~~~A~~~~~~al~~~~~~~--------------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 100 KYKEAEPLCKRALEIREKVL--------------------------------GKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHH--------------------------------CTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHc--------------------------------CCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999997642110 0111234478999999999999999999
Q ss_pred HHHHHHhcc--------CcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhc
Q 002100 807 DCYMNALNI--------KHT--RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQ 876 (967)
Q Consensus 807 ~~~~~Al~~--------~~~--~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~ 876 (967)
.+|+++++. .+. .++..+|.++..+|++++|+..++++++..+.. ....
T Consensus 148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---------------------~~~~ 206 (283)
T 3edt_B 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK---------------------EFGS 206 (283)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---------------------HSSS
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---------------------cCCC
Confidence 999999985 333 388999999999999999999999999875531 0112
Q ss_pred cCCCCchHHHHHHHHHHhCCC------HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 877 LDPMRTYPYRYRAAVLMDDHK------EAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 877 l~p~~~~~~~~la~~~~~~g~------~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
..+.....+..++..+...+. +.++...++......|. ..++..+|.+|..+|++++|+..|++++++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 207 VNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 234444555555554444332 33444444433333333 236666777777777777777777777654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=157.44 Aligned_cols=209 Identities=11% Similarity=0.048 Sum_probs=159.9
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE---HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYA 754 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 754 (967)
+..++.+|..+...|++++|+..|+++++..|.+ ..+++.+|.+++..|++++|+..|+++++.+|++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~-------- 75 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-------- 75 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC--------
Confidence 5678889999999999999999999999998876 47899999999999999999999999999999554
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCH
Q 002100 755 LADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQR 834 (967)
Q Consensus 755 la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~ 834 (967)
....+++.+|.++...+.. .+ ..+..++.++..+|++
T Consensus 76 -----------------------------~~~~a~~~~g~~~~~~~~~-----~~---------~~~~~~~~~~~~~~~~ 112 (225)
T 2yhc_A 76 -----------------------------NIDYVMYMRGLTNMALDDS-----AL---------QGFFGVDRSDRDPQQA 112 (225)
T ss_dssp -----------------------------THHHHHHHHHHHHHHHHC----------------------------CCHHH
T ss_pred -----------------------------cHHHHHHHHHHHHHhhhhh-----hh---------hhhhccchhhcCcHHH
Confidence 2235778888888766532 11 1234566677778889
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 835 KAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 835 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
++|+..|+++++.+|++..++..+........ ........+|.+|.+.|++++|+..|+++++..|+
T Consensus 113 ~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 113 RAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 99999999999998887665543332111111 11223467899999999999999999999999998
Q ss_pred h----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchh
Q 002100 915 L----QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTD 950 (967)
Q Consensus 915 ~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~ 950 (967)
. +++..+|.++.++|++++|+..++++....|++.+
T Consensus 180 ~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 180 TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 3 48999999999999999999999999999998754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-15 Score=149.91 Aligned_cols=170 Identities=15% Similarity=0.158 Sum_probs=161.4
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhh
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNL 631 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 631 (967)
...+..+|.++...|++++|+..+++++...| ++.++..+|.++...|++++|+..++++++.+|++...+ ..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~ 81 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA------TV 81 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH------HH
Confidence 46788899999999999999999999999999 899999999999999999999999999999999998888 77
Q ss_pred HhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch
Q 002100 632 VETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE 711 (967)
Q Consensus 632 ~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~ 711 (967)
++.++...+++++| +..+.++++.+|.++..+..+|.++...|++++|+..++++++..|.+
T Consensus 82 ~a~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 82 LGLTYVQVQKYDLA------------------VPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHHHHHTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhcCHHHH------------------HHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 88999999999999 899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 712 HEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 712 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
+.++..+|.++...|++++|+..++++++++|++.
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 99999999999999999999999999999988554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-16 Score=151.86 Aligned_cols=143 Identities=10% Similarity=0.028 Sum_probs=70.6
Q ss_pred HHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHH
Q 002100 560 AILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPL 638 (967)
Q Consensus 560 a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~ 638 (967)
|.++...|++++|+..+++++..+| ++..++.+|.+|...|+|++|+..|+++++++|++..++ ..++.++..
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~------~~lg~~~~~ 77 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAH------RFLGLLYEL 77 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHH
Confidence 4444444444555555555444444 444444445555555555555555555555555544444 444444444
Q ss_pred hhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHH-HHHHHhcCCchhHHHHH
Q 002100 639 VQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRS-LRLARNYSTSEHEKLVY 717 (967)
Q Consensus 639 ~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~-l~~al~~~p~~~~a~~~ 717 (967)
.+++++| +..|+++++.+|+++.+++.+|.++...|++++|... ++++++++|+++.++..
T Consensus 78 ~~~~~~A------------------~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l 139 (150)
T 4ga2_A 78 EENTDKA------------------VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKL 139 (150)
T ss_dssp TTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHH
T ss_pred cCchHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 4444444 4444455555555555555555555555555444433 35555555555555555
Q ss_pred HHHHHHHcC
Q 002100 718 EGWILYDTG 726 (967)
Q Consensus 718 lg~~~~~~g 726 (967)
++.++...|
T Consensus 140 ~~~ll~~~G 148 (150)
T 4ga2_A 140 KEQLLDCEG 148 (150)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHhC
Confidence 555555544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=151.13 Aligned_cols=169 Identities=14% Similarity=0.082 Sum_probs=156.9
Q ss_pred chHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc
Q 002100 784 RKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY 861 (967)
Q Consensus 784 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 861 (967)
.....+..+|.++...|++++|+..|+++++.. ...++..+|.++...|++++|+..++++++..|++..++..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 345788999999999999999999999999854 456899999999999999999999999999999999999998853
Q ss_pred ----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHH
Q 002100 862 ----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQR 936 (967)
Q Consensus 862 ----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~ 936 (967)
+++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|+ ..++..+|.++..+|++++|+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 4689999999999999999999
Q ss_pred HHHHHHhcCCCchhHH
Q 002100 937 DCEAALCLDPNHTDTL 952 (967)
Q Consensus 937 ~~~~al~~~P~~~~~l 952 (967)
.++++++++|++....
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 166 HFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHCCCGGG
T ss_pred HHHHHHHcCCCchhhH
Confidence 9999999999887543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.7e-16 Score=149.91 Aligned_cols=147 Identities=17% Similarity=0.075 Sum_probs=132.1
Q ss_pred cchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHh
Q 002100 521 PVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIAL 599 (967)
Q Consensus 521 ~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~ 599 (967)
++|.++..++.+ ++|++.+++++..+|+++.+++.+|.+|+..|+|++|++.|+++++++| ++.++..+|.+|..+
T Consensus 2 ~LG~~~~~~~~~---e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 2 PLGSMRRSKADV---ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp -----CCCHHHH---HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HhHHHHHHcChH---HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 356777777766 9999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChH
Q 002100 600 EDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSL 679 (967)
Q Consensus 600 g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~ 679 (967)
|++++|+..|+++++++|+++.++ ..++.++...+++++| +...++++++++|+++.
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~------~~la~~~~~~~~~~~a-----------------a~~~~~~al~l~P~~~~ 135 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLV------LKIAELLCKNDVTDGR-----------------AKYWVERAAKLFPGSPA 135 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHHCSSSSH-----------------HHHHHHHHHHHSTTCHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHcCChHHH-----------------HHHHHHHHHHhCcCCHH
Confidence 999999999999999999999999 7889999999999887 13446899999999999
Q ss_pred HHHHHHHHHHHhcC
Q 002100 680 LRFRQSLLLLRLNS 693 (967)
Q Consensus 680 ~~~~~g~~~~~~g~ 693 (967)
++..++.++...|+
T Consensus 136 ~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 136 VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999888775
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-14 Score=150.55 Aligned_cols=173 Identities=9% Similarity=-0.047 Sum_probs=145.1
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhh
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S---PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLH 627 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 627 (967)
.+..++.+|..++..|++++|+..|++++...| + ..+++.+|.+|..+|++++|+..|+++++.+|++..+..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~--- 79 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY--- 79 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH---
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHH---
Confidence 346788889999999999999999999998888 3 468899999999999999999999999999998875321
Q ss_pred hhhhHhhhHHH------------------hhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH--------
Q 002100 628 GDNLVETLQPL------------------VQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR-------- 681 (967)
Q Consensus 628 ~~~~~~~l~~~------------------~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~-------- 681 (967)
+.+.++.++.. .+++++| +..|+++++.+|+.+.+.
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A------------------~~~~~~~l~~~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAA------------------FSDFSKLVRGYPNSQYTTDATKRLVF 141 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHH------------------HHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHH------------------HHHHHHHHHHCcCChhHHHHHHHHHH
Confidence 11566666655 3455555 999999999999987654
Q ss_pred ---------HHHHHHHHHhcCHHHHHHHHHHHHhcCCchh---HHHHHHHHHHHHcCChHHHHHHHHHHHhcccch
Q 002100 682 ---------FRQSLLLLRLNSQKAAMRSLRLARNYSTSEH---EKLVYEGWILYDTGHREEALAKAEESISIQRSF 745 (967)
Q Consensus 682 ---------~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~---~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 745 (967)
+.+|.+|...|++++|+..|+++++..|+++ +++..+|.++..+|++++|+..++++....|+.
T Consensus 142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 5788999999999999999999999999875 789999999999999999999999999888843
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.4e-14 Score=152.36 Aligned_cols=187 Identities=13% Similarity=0.153 Sum_probs=166.7
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCc----------HHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC--H
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENK----------LAAAITEINRIIGFKV-SPDCLELRAWISIALED--Y 602 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~--~ 602 (967)
++|+..+.+++.++|++..+|..++.++...++ +++++..++.++..+| +..++..++++....++ +
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 689999999999999999999999999988876 7899999999999999 99999999999999994 8
Q ss_pred HHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhc-hhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH
Q 002100 603 DGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQ-WSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR 681 (967)
Q Consensus 603 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~-~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~ 681 (967)
++++..+.++++.+|.|..++ ..++.+....+. ++++ ++.+.++++.+|.+..+|
T Consensus 127 ~~EL~~~~k~l~~dprNy~AW------~~R~~vl~~l~~~~~ee------------------l~~~~~~I~~~p~N~SAW 182 (331)
T 3dss_A 127 ARELELCARFLEADERNFHCW------DYRRFVAAQAAVAPAEE------------------LAFTDSLITRNFSNYSSW 182 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCCHHHH------------------HHHHHHHHHHCSCCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHhCcCHHHH------------------HHHHHHHHHHCCCCHHHH
Confidence 999999999999999999999 666777777776 4566 999999999999999999
Q ss_pred HHHHHHHHHh--------------cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHc-----------CChHHHHHHHH
Q 002100 682 FRQSLLLLRL--------------NSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDT-----------GHREEALAKAE 736 (967)
Q Consensus 682 ~~~g~~~~~~--------------g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~-----------g~~~eA~~~~~ 736 (967)
..++.++... +.+++++..+.+++..+|++..+|+++..++... +.++++++.++
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 9999999887 6689999999999999999999998887777665 35677788888
Q ss_pred HHHhcccchH
Q 002100 737 ESISIQRSFE 746 (967)
Q Consensus 737 ~al~~~p~~~ 746 (967)
+++++.|++.
T Consensus 263 elle~~pd~~ 272 (331)
T 3dss_A 263 ELQELEPENK 272 (331)
T ss_dssp HHHHHCTTCH
T ss_pred HHHhhCcccc
Confidence 8887777553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.4e-15 Score=147.16 Aligned_cols=167 Identities=13% Similarity=0.032 Sum_probs=143.3
Q ss_pred CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhh
Q 002100 549 DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLH 627 (967)
Q Consensus 549 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 627 (967)
+|.....++.+|..+...|++++|+..|+++++.+| ++.+++.+|.++...|++++|+..+++++..+| ++...
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~---- 76 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYK---- 76 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHH----
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHH----
Confidence 466677899999999999999999999999999999 899999999999999999999999999999999 66554
Q ss_pred hhhhHhhhHH-HhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002100 628 GDNLVETLQP-LVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARN 706 (967)
Q Consensus 628 ~~~~~~~l~~-~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~ 706 (967)
...+.+.. ...... +++..++++++.+|+++.+++.+|.++...|++++|+..|+++++
T Consensus 77 --~~~~~~~~~~~~~~~------------------~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 77 --SLIAKLELHQQAAES------------------PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp --HHHHHHHHHHHHTSC------------------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHhhcccc------------------hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22232211 111111 248999999999999999999999999999999999999999999
Q ss_pred cCCch--hHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 707 YSTSE--HEKLVYEGWILYDTGHREEALAKAEESIS 740 (967)
Q Consensus 707 ~~p~~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 740 (967)
.+|+. ..++..+|.++...|+.++|+..|++++.
T Consensus 137 ~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 137 VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99986 56999999999999999999999999884
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8.5e-15 Score=156.54 Aligned_cols=226 Identities=12% Similarity=0.027 Sum_probs=154.4
Q ss_pred CcHHHHHHHHHHHhc-------cC-C-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCchHHhhhhhhh
Q 002100 567 NKLAAAITEINRIIG-------FK-V-SPDCLELRAWISIALEDYDGALRDVRALLTLD--------PSYMMFYGQLHGD 629 (967)
Q Consensus 567 g~~~~A~~~~~~al~-------~~-p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~~~~~ 629 (967)
|++++|+..|++++. .+ | ...++..+|.++...|++++|+..|++++++. |....++
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------ 88 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATL------ 88 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHH------
Confidence 444444444444443 34 4 67789999999999999999999999999873 3334444
Q ss_pred hhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc--------CCCChHHHHHHHHHHHHhcCHHHHHHHH
Q 002100 630 NLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN--------DPGKSLLRFRQSLLLLRLNSQKAAMRSL 701 (967)
Q Consensus 630 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~--------~p~~~~~~~~~g~~~~~~g~~~~A~~~l 701 (967)
..++.++...+++++| +..+.++++. +|....++..+|.++...|++++|+..+
T Consensus 89 ~~l~~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 150 (283)
T 3edt_B 89 NNLAVLYGKRGKYKEA------------------EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYY 150 (283)
T ss_dssp HHHHHHHHTTTCHHHH------------------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHH------------------HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7788999999999999 7778877776 4677789999999999999999999999
Q ss_pred HHHHhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHH
Q 002100 702 RLARNY--------STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLE 773 (967)
Q Consensus 702 ~~al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le 773 (967)
+++++. .|....++..+|.++...|++++|+..+++++++.+... ..
T Consensus 151 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--------~~----------------- 205 (283)
T 3edt_B 151 RRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE--------FG----------------- 205 (283)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH--------SS-----------------
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------CC-----------------
Confidence 999998 777889999999999999999999999999998765321 00
Q ss_pred HHhcCCCCCCchHHHHHHhHHHHHhc------ccHHHHHHHHHHHhccCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002100 774 EALRCPSDGLRKGQALNNLGSVYVDC------EKLDLAADCYMNALNIKHT--RAHQGLARVYHLKNQRKAAYDEMTKLI 845 (967)
Q Consensus 774 ~~~~~~~~~~~~~~a~~~lg~~~~~~------g~~~~A~~~~~~Al~~~~~--~a~~~la~~~~~~g~~~~A~~~~~~al 845 (967)
...+.....+..++..+... ..+.++...++......+. .++..+|.+|..+|++++|+..|++++
T Consensus 206 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 206 ------SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp ------SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00111112333333333332 2344444444443332222 266667777777777777777777766
Q ss_pred HH
Q 002100 846 EK 847 (967)
Q Consensus 846 ~~ 847 (967)
+.
T Consensus 280 ~~ 281 (283)
T 3edt_B 280 RN 281 (283)
T ss_dssp TT
T ss_pred Hh
Confidence 53
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-13 Score=144.31 Aligned_cols=237 Identities=14% Similarity=0.107 Sum_probs=184.8
Q ss_pred hhcCChH-HHHHHHHHHHHhCchhHHHH--HHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHH
Q 002100 468 LEREEYK-DAQNWFKAAVEAGHIYSLVG--VARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNT 544 (967)
Q Consensus 468 ~~~g~y~-~A~~~f~~al~~~~~~a~~~--la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~ 544 (967)
.+.|+|. +|+.++++++.++|....+. -..+....+.. ..+ -.....+ ++++..++.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~-------------~~~----~~~~~~l---~~EL~~~~~ 99 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETE-------------KSP----EESAALV---KAELGFLES 99 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH-------------SCH----HHHHHHH---HHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhccc-------------ccc----hhhhHHH---HHHHHHHHH
Confidence 3567776 89999999999999554443 22222111100 000 0011224 899999999
Q ss_pred hHhhCCCCchhHHHHHHHHHhcCc--HHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCch
Q 002100 545 ATELDPTLSYPYKYRAILLVEENK--LAAAITEINRIIGFKV-SPDCLELRAWISIALED-YDGALRDVRALLTLDPSYM 620 (967)
Q Consensus 545 al~l~P~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~-~~~A~~~~~~al~l~p~~~ 620 (967)
++..+|++..+|..++.++...++ +++++..++++++.+| +..++..++.+....|. ++++++.+.++++.+|.|.
T Consensus 100 ~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~ 179 (331)
T 3dss_A 100 CLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 179 (331)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCH
T ss_pred HHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCH
Confidence 999999999999999999999994 9999999999999999 99999999999999999 6999999999999999999
Q ss_pred HHhhhhhhhhhHhhhHHHh--------------hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHH
Q 002100 621 MFYGQLHGDNLVETLQPLV--------------QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSL 686 (967)
Q Consensus 621 ~~~~~~~~~~~~~~l~~~~--------------~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~ 686 (967)
.++ ..++.+.... +.++++ +..+.+++..+|.+..+|+.+..
T Consensus 180 SAW------~~R~~ll~~l~~~~~~~~~~~~~~~~~~eE------------------le~~~~ai~~~P~d~SaW~Y~r~ 235 (331)
T 3dss_A 180 SSW------HYRSCLLPQLHPQPDSGPQGRLPENVLLKE------------------LELVQNAFFTDPNDQSAWFYHRW 235 (331)
T ss_dssp HHH------HHHHHHHHHHSCCC------CCCHHHHHHH------------------HHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHH------HHHHHHHHHhhhccccccccccchHHHHHH------------------HHHHHHHHHhCCCCHHHHHHHHH
Confidence 999 5556666555 334444 99999999999999999975555
Q ss_pred HHHHh-----------cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH---HcCChHHHHHHHHHHHhcccchHHH
Q 002100 687 LLLRL-----------NSQKAAMRSLRLARNYSTSEHEKLVYEGWILY---DTGHREEALAKAEESISIQRSFEAF 748 (967)
Q Consensus 687 ~~~~~-----------g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~---~~g~~~eA~~~~~~al~~~p~~~~~ 748 (967)
++... +.+++++..++++++..|++.-.+..++.+.. ..|..++....+.+.+++||....+
T Consensus 236 ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~ 311 (331)
T 3dss_A 236 LLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 311 (331)
T ss_dssp HHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhH
Confidence 55544 56899999999999999998544444433322 3578889999999999999965533
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-14 Score=154.33 Aligned_cols=168 Identities=13% Similarity=0.040 Sum_probs=154.7
Q ss_pred CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhh
Q 002100 549 DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLH 627 (967)
Q Consensus 549 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 627 (967)
-|.+..+++.+|..+...|++++|+..|++++..+| ++.+++.+|.++...|++++|+..+++++..+|+.....
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~---- 188 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQG---- 188 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHH----
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHH----
Confidence 489999999999999999999999999999999999 899999999999999999999999999999999765444
Q ss_pred hhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 002100 628 GDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNY 707 (967)
Q Consensus 628 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~ 707 (967)
...+..+...++.+.| +..++++++.+|+++.+++.+|.++...|++++|+..|+++++.
T Consensus 189 --~~~~~~l~~~~~~~~a------------------~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 189 --LVAQIELLXQAADTPE------------------IQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp --HHHHHHHHHHHTSCHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhhcccCcc------------------HHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 4445556666666666 89999999999999999999999999999999999999999999
Q ss_pred CCch--hHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 708 STSE--HEKLVYEGWILYDTGHREEALAKAEESIS 740 (967)
Q Consensus 708 ~p~~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 740 (967)
+|++ ..++..++.++...|+.++|+..|++++.
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9998 88999999999999999999999999884
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-13 Score=148.55 Aligned_cols=244 Identities=14% Similarity=0.118 Sum_probs=187.4
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcC-cHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHh-c-CHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEEN-KLAAAITEINRIIGFKV-SPDCLELRAWISIAL-E-DYDGALRDVRA 611 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~-g-~~~~A~~~~~~ 611 (967)
++|+..++++|.++|++..+|..++.++...+ .++++++.+++++..+| +..++..++++.... + ++++++..+.+
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 78999999999999999999999999999999 59999999999999999 999999999999998 8 99999999999
Q ss_pred HHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 002100 612 LLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRL 691 (967)
Q Consensus 612 al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~ 691 (967)
+++.+|.+..++ ..++.+....+.++.+. ...+ ..+++.+.++++.+|.+..+|..++.++...
T Consensus 151 ~L~~dpkNy~AW------~~R~wvl~~l~~~~~~~-----~~~~-----~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 151 SLLPDPKNYHTW------AYLHWLYSHFSTLGRIS-----EAQW-----GSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HTSSCTTCHHHH------HHHHHHHHHHHHTTCCC-----HHHH-----HHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred HHHhCCCCHHHH------HHHHHHHHHhccccccc-----hhhH-----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 999999999999 66777777777777110 0000 0139999999999999999999999999998
Q ss_pred cC-------HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHH----HHHHHHHHHhcccchHHHHHHHHHhhhcCC
Q 002100 692 NS-------QKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREE----ALAKAEESISIQRSFEAFFLKAYALADSSL 760 (967)
Q Consensus 692 g~-------~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~e----A~~~~~~al~~~p~~~~~~~~~~~la~~~~ 760 (967)
+. +++++..+++++..+|++..+|.++..++...|+... +.--+ -+..+++..+
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------- 279 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPY-TASKLNPDIE-------------- 279 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGG-TC----------------------
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccc-ccccccccch--------------
Confidence 87 7999999999999999999999999999988776410 00000 0000011100
Q ss_pred CCCchHHHHHHHHHHhcCCC------CCCchHHHHHHhHHHHHhcccHHHHHHHHHHHh-ccCcHH
Q 002100 761 NPESSAYVIQLLEEALRCPS------DGLRKGQALNNLGSVYVDCEKLDLAADCYMNAL-NIKHTR 819 (967)
Q Consensus 761 ~~~~~~~a~~~le~~~~~~~------~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al-~~~~~~ 819 (967)
.+.+.+.+... .......++..++.+|.+.|+.++|+++|+... +.++.+
T Consensus 280 ---------~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir 336 (349)
T 3q7a_A 280 ---------TVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR 336 (349)
T ss_dssp ---------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred ---------hHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH
Confidence 01111111111 113455677788888888888888888888876 456554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.4e-14 Score=151.39 Aligned_cols=241 Identities=13% Similarity=0.064 Sum_probs=193.9
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCchHHhhhhhhhhh
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE-DYDGALRDVRALLTLDPSYMMFYGQLHGDNL 631 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 631 (967)
.++.++..+....+..++|++.+++++.++| +..++..++.+...++ .+++++..+.+++..+|++..++ +.
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW------~h 128 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVW------HH 128 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH------HH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH------HH
Confidence 3444555556666777899999999999999 9999999999999999 59999999999999999999999 66
Q ss_pred HhhhHHHh-h-chhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH--------HHHHHH
Q 002100 632 VETLQPLV-Q-QWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQK--------AAMRSL 701 (967)
Q Consensus 632 ~~~l~~~~-~-~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~--------~A~~~l 701 (967)
++.+.... + +++++ +..+.++++.+|.+..+|..++.++...+.++ +++..+
T Consensus 129 R~wlL~~l~~~~~~~E------------------L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~ 190 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSE------------------IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWC 190 (349)
T ss_dssp HHHHHHHHCCSCCHHH------------------HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence 67777766 5 66666 99999999999999999999999999999888 999999
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHcCC-------hHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHH
Q 002100 702 RLARNYSTSEHEKLVYEGWILYDTGH-------REEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEE 774 (967)
Q Consensus 702 ~~al~~~p~~~~a~~~lg~~~~~~g~-------~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~ 774 (967)
+++++.+|.+..+|.+++.++...++ ++++++.+++++.++|++.
T Consensus 191 ~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~---------------------------- 242 (349)
T 3q7a_A 191 NEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNV---------------------------- 242 (349)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCH----------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCH----------------------------
Confidence 99999999999999999999999987 7999999999999999877
Q ss_pred HhcCCCCCCchHHHHHHhHHHHHhcccH--------------------HHHHHHHHHHhc--------cCcHHHHHHHHH
Q 002100 775 ALRCPSDGLRKGQALNNLGSVYVDCEKL--------------------DLAADCYMNALN--------IKHTRAHQGLAR 826 (967)
Q Consensus 775 ~~~~~~~~~~~~~a~~~lg~~~~~~g~~--------------------~~A~~~~~~Al~--------~~~~~a~~~la~ 826 (967)
.+|+.+..++...|.. .+-.+.....+. +....++.-||.
T Consensus 243 ------------SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d 310 (349)
T 3q7a_A 243 ------------SAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLAD 310 (349)
T ss_dssp ------------HHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHH
Confidence 5666655555554432 122222222222 234458999999
Q ss_pred HHHHhCCHHHHHHHHHHHH-HHccCCHHHHHHH
Q 002100 827 VYHLKNQRKAAYDEMTKLI-EKARNNASAYEKR 858 (967)
Q Consensus 827 ~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~ 858 (967)
+|...|+.++|.+.++.+. +.+|-....|..+
T Consensus 311 ~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 311 SFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 9999999999999999886 4466544444433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=143.35 Aligned_cols=156 Identities=10% Similarity=-0.023 Sum_probs=140.1
Q ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc---
Q 002100 787 QALNNLGSVYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY--- 861 (967)
Q Consensus 787 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~--- 861 (967)
..+..+|..+...|++++|+..|+++++ +++..++..+|.++...|++++|+..++++++..| ++..+...+..
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence 4678889999999999999999999998 55667999999999999999999999999999999 77766554421
Q ss_pred --CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHcCChHHHHH
Q 002100 862 --CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL---QLLHLRAAFHDSMGDHLHTQR 936 (967)
Q Consensus 862 --~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~---~~~~~~a~~~~~~g~~~~A~~ 936 (967)
.+..+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++ .++..+|.++..+|+.++|+.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 234458999999999999999999999999999999999999999999999973 489999999999999999999
Q ss_pred HHHHHHh
Q 002100 937 DCEAALC 943 (967)
Q Consensus 937 ~~~~al~ 943 (967)
.|+++|.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999975
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-11 Score=142.17 Aligned_cols=424 Identities=10% Similarity=-0.012 Sum_probs=257.5
Q ss_pred ChHHHHHHHHHHHHhCchh--HHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhhC
Q 002100 472 EYKDAQNWFKAAVEAGHIY--SLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATELD 549 (967)
Q Consensus 472 ~y~~A~~~f~~al~~~~~~--a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~ 549 (967)
...+-+..|++++..+|.. .+..++..... .+ +.+.+...|++++...
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~---------------------------~~---~~~~aR~vyEraL~~f 96 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVS---------------------------LK---QWKQVYETFDKLHDRF 96 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHH---------------------------TT---CHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHh---------------------------cC---cHHHHHHHHHHHHHHC
Confidence 3556677889999998844 34433332211 12 3378888999999999
Q ss_pred CCCchhHHHHHHHHHhcCc---HHHHHHHHHHHhccC---CChhHHHHHHHHHHHhcCH----HHH----HHHHHHHHHh
Q 002100 550 PTLSYPYKYRAILLVEENK---LAAAITEINRIIGFK---VSPDCLELRAWISIALEDY----DGA----LRDVRALLTL 615 (967)
Q Consensus 550 P~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~----~~A----~~~~~~al~l 615 (967)
|.....|...+......++ ++.+...|++++... |+.+.|..........++. +++ ...|+.++..
T Consensus 97 P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~ 176 (679)
T 4e6h_A 97 PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK 176 (679)
T ss_dssp TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999998 6788777776666555553 333 4677777764
Q ss_pred ----CCCchHHhhhhhhhhhHhh----hHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChH--HHHHHH
Q 002100 616 ----DPSYMMFYGQLHGDNLVET----LQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSL--LRFRQS 685 (967)
Q Consensus 616 ----~p~~~~~~~~~~~~~~~~~----l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~--~~~~~g 685 (967)
+|+....|..... +.... -....++.+.+ -..|.+++.. |.... +|....
T Consensus 177 vG~~d~~s~~iW~~Yi~-f~~~~~~~~~~eeq~~~~~~------------------R~iy~raL~i-P~~~~~~~w~~Y~ 236 (679)
T 4e6h_A 177 CAIFEPKSIQFWNEYLH-FLEHWKPVNKFEEQQRVQYI------------------RKLYKTLLCQ-PMDCLESMWQRYT 236 (679)
T ss_dssp TTTTCSSCHHHHHHHHH-HHHTCCCCSHHHHHHHHHHH------------------HHHHHHHTTS-CCSSHHHHHHHHH
T ss_pred hCcccccchHHHHHHHH-HHHhccccCcHHHHhHHHHH------------------HHHHHHHHhC-ccHHHHHHHHHHH
Confidence 6666666632100 00000 00111222233 4556666643 33211 110000
Q ss_pred -------------HHHHHhcCHHHHHHHHHHHHh------c-CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch
Q 002100 686 -------------LLLLRLNSQKAAMRSLRLARN------Y-STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF 745 (967)
Q Consensus 686 -------------~~~~~~g~~~~A~~~l~~al~------~-~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 745 (967)
.+--...+|..|...++..-. . .|....... ...+=.........+..+.+.+..
T Consensus 237 ~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~-~~~~p~~~~~~~~ql~lW~~yi~f---- 311 (679)
T 4e6h_A 237 QWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT-ESNLPKPNEYDVQQLLIWLEWIRW---- 311 (679)
T ss_dssp HHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC-TTTSCCTTCCCHHHHHHHHHHHHH----
T ss_pred HHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch-hccCCCCchhHHHHHHHHHHHHHH----
Confidence 000111233333333322110 0 010000000 000000000000111111111100
Q ss_pred HHHHHHHHHhhhcCC-CCC---chHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHH-HHHHHHhccC--cH
Q 002100 746 EAFFLKAYALADSSL-NPE---SSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAA-DCYMNALNIK--HT 818 (967)
Q Consensus 746 ~~~~~~~~~la~~~~-~~~---~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~-~~~~~Al~~~--~~ 818 (967)
-.... ..+ ...++..++++++.... .....|...+......|+.++|. ..|++|+... ..
T Consensus 312 ----------Ek~~~~~l~~~~~~~Rv~~~Ye~aL~~~p---~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~ 378 (679)
T 4e6h_A 312 ----------ESDNKLELSDDLHKARMTYVYMQAAQHVC---FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA 378 (679)
T ss_dssp ----------HHTCTTCCCHHHHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH
T ss_pred ----------HHhCCccccchhhHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH
Confidence 00000 000 01223334444443322 23488999999999999999997 9999999844 44
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----------cC-----------CHHHHHHHHcc----CChHHHHHHHH
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKA-----------RN-----------NASAYEKRSEY----CDRDMAKSDLS 872 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~-----------p~-----------~~~~~~~~~~~----~~~~~A~~~l~ 872 (967)
..+..++......|+++.|.+.|+++++.. |. ...+|.....+ ++.+.|...|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 578889999999999999999999999863 32 23355555533 78899999999
Q ss_pred Hhhcc-CCCCchHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--
Q 002100 873 MATQL-DPMRTYPYRYRAAVLMDDH-KEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPN-- 947 (967)
Q Consensus 873 ~al~l-~p~~~~~~~~la~~~~~~g-~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-- 947 (967)
+|++. .+.....|...|.+..+.+ +++.|.+.|+++++..|+. ..+...+.+....|+.+.|...|++|+...|+
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 99988 4455677777777777765 4999999999999999984 46667888889999999999999999999983
Q ss_pred -chhHHHHHHHHHhhhh
Q 002100 948 -HTDTLELYDKATERVN 963 (967)
Q Consensus 948 -~~~~l~l~~r~~~~~~ 963 (967)
...++..+.+.+...+
T Consensus 539 ~~~~lw~~~~~fE~~~G 555 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVG 555 (679)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 5667777777766554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-14 Score=133.79 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=105.5
Q ss_pred HhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHH
Q 002100 544 TATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMF 622 (967)
Q Consensus 544 ~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 622 (967)
++..++|+.+.++..+|..++..|+|++|++.|+++++++| ++.++..+|.+|..+|++++|+..|+++++++|++..+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34567888889999999999999999999999999999999 89999999999999999999999999999999999988
Q ss_pred hhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHH
Q 002100 623 YGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLL 687 (967)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~ 687 (967)
+ +.+|.++...+++++| +..|+++++++|++..++..++.+
T Consensus 84 ~------~~lg~~~~~~~~~~~A------------------~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 84 Y------IRKAACLVAMREWSKA------------------QRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp H------HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred H------HHHHHHHHHCCCHHHH------------------HHHHHHHHHHCcCCHHHHHHHHHh
Confidence 8 7889999999999998 889999999999988888777665
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=149.90 Aligned_cols=169 Identities=15% Similarity=0.091 Sum_probs=157.4
Q ss_pred C-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccc
Q 002100 584 V-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIG 662 (967)
Q Consensus 584 p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~ 662 (967)
| +.+.++.+|..+...|++++|+..|+++++.+|++..++ +.++.++...+++++|
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~------~~la~~~~~~g~~~~A----------------- 170 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIG------LLLAETLIALNRSEDA----------------- 170 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHH------HHHHHHHHHTTCHHHH-----------------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHH------HHHHHHHHHCCCHHHH-----------------
Confidence 7 788999999999999999999999999999999999998 8889999999999999
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 002100 663 SLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQ 742 (967)
Q Consensus 663 al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 742 (967)
+..+++++..+|+........+..+...++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+
T Consensus 171 -~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 171 -EAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp -HHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -HHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 8999999999998777777888889999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 743 RSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 743 p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
|++. ...++.++|.++...|+.++|+..|++++.
T Consensus 250 p~~~--------------------------------------~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 250 LTAA--------------------------------------DGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TTGG--------------------------------------GGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccc--------------------------------------cchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9652 127899999999999999999999999874
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-13 Score=138.60 Aligned_cols=169 Identities=12% Similarity=-0.013 Sum_probs=151.1
Q ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHccCCHHHHHHHHcc-
Q 002100 787 QALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKN----QRKAAYDEMTKLIEKARNNASAYEKRSEY- 861 (967)
Q Consensus 787 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~~~~~- 861 (967)
.+++++|.+|...+++++|+.+|+++++.++..+++.||.+|.. + ++++|+.+|+++++ +.++.+++.+|..
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y 95 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVL 95 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999998 7 99999999999965 5788999998832
Q ss_pred -------CChHHHHHHHHHhhccCC--CCchHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 002100 862 -------CDRDMAKSDLSMATQLDP--MRTYPYRYRAAVLMD----DHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSM 928 (967)
Q Consensus 862 -------~~~~~A~~~l~~al~l~p--~~~~~~~~la~~~~~----~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~ 928 (967)
+++++|+..|+++++..| .++.+++++|.+|.. .+++++|+.+|+++++..+++.+++.+|.+|...
T Consensus 96 ~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g 175 (212)
T 3rjv_A 96 VNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQG 175 (212)
T ss_dssp TCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHC
T ss_pred HcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcC
Confidence 689999999999999988 458999999999999 8999999999999999955567899999999864
Q ss_pred -C-----ChHHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 002100 929 -G-----DHLHTQRDCEAALCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 929 -g-----~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~ 960 (967)
| |+++|+.+|+++.+. ++++....+.++++
T Consensus 176 ~gg~~~~d~~~A~~~~~~A~~~--g~~~A~~~l~~l~~ 211 (212)
T 3rjv_A 176 EKGFIEPNKQKALHWLNVSCLE--GFDTGCEEFDRISK 211 (212)
T ss_dssp BTTTBCCCHHHHHHHHHHHHHH--TCHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHhhc
Confidence 3 999999999999987 56677777777653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.6e-14 Score=130.02 Aligned_cols=121 Identities=16% Similarity=0.084 Sum_probs=108.9
Q ss_pred HHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhc
Q 002100 578 RIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWS 656 (967)
Q Consensus 578 ~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~ 656 (967)
++..++| ..+++..+|..|+..|+|++|+..|+++++++|++..++ ..++.++..++++++|
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~~~~~~~~~~~~~~A----------- 66 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILY------SNRAACLTKLMEFQRA----------- 66 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCHHHH-----------
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------HHHhhHHHhhccHHHH-----------
Confidence 4556888 788999999999999999999999999999999999988 7889999999999999
Q ss_pred cccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 002100 657 SVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWIL 722 (967)
Q Consensus 657 ~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~ 722 (967)
+..+.++++.+|.++.+++.+|.++..+|++++|+..|+++++++|++.+++..++.++
T Consensus 67 -------~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 67 -------LDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp -------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred -------HHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999988888764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=150.59 Aligned_cols=147 Identities=14% Similarity=0.023 Sum_probs=87.1
Q ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHhcc----Cc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCC------H
Q 002100 787 QALNNLGSVYVDCEKLDLAADCYMNALNI----KH----TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNN------A 852 (967)
Q Consensus 787 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~~----~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 852 (967)
.++.++|.+|..+|++++|+.+|++++++ +. ..++.++|.+|.. |++++|+..|+++++..|.. .
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 45666666666666666666666666652 11 1255566666666 66666666666666665532 2
Q ss_pred HHHHHHHc----cCChHHHHHHHHHhhccCCCC------chHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh----H--
Q 002100 853 SAYEKRSE----YCDRDMAKSDLSMATQLDPMR------TYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL----Q-- 916 (967)
Q Consensus 853 ~~~~~~~~----~~~~~~A~~~l~~al~l~p~~------~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~----~-- 916 (967)
.++..+|. .+++++|+..|++++++.|.+ ..++..+|.++...|++++|+..|++++ ..|.. .
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~ 234 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCA 234 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHH
Confidence 33444442 155555555555555554433 2356777888888888888888888888 87762 1
Q ss_pred HHHHHHHHHHHcCChHHHHH
Q 002100 917 LLHLRAAFHDSMGDHLHTQR 936 (967)
Q Consensus 917 ~~~~~a~~~~~~g~~~~A~~ 936 (967)
.+..++..+ ..|+.+.+..
T Consensus 235 ~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 235 ALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHH-HhcCHHHHHH
Confidence 344445544 4566554444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-13 Score=148.04 Aligned_cols=205 Identities=12% Similarity=0.012 Sum_probs=120.3
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHh-cCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVE-ENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
++|...++++.+..+.. ++. .+++++|+..|+++ |.+|...|++++|+..|.++++
T Consensus 8 ~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al~ 64 (307)
T 2ifu_A 8 SEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA-------------AVAFKNAKQLEQAKDAYLQEAE 64 (307)
T ss_dssp HHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666655532 111 35666666666654 4566666777777777777666
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC------ChHHHHHHHHHH
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG------KSLLRFRQSLLL 688 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~------~~~~~~~~g~~~ 688 (967)
+.+..............++.++...++|++| +..|++++++.+. ....+..+|.+|
T Consensus 65 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A------------------~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~ 126 (307)
T 2ifu_A 65 AHANNRSLFHAAKAFEQAGMMLKDLQRMPEA------------------VQYIEKASVMYVENGTPDTAAMALDRAGKLM 126 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGG------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCHHHH------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6443211111111113444555555555555 5555555444221 123556677777
Q ss_pred HHhcCHHHHHHHHHHHHhcCCch------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCC
Q 002100 689 LRLNSQKAAMRSLRLARNYSTSE------HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNP 762 (967)
Q Consensus 689 ~~~g~~~~A~~~l~~al~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~ 762 (967)
.. |++++|+..|++++++.|.. ..++.++|.++..+|++++|+..|++++.+.|+..
T Consensus 127 ~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------------- 189 (307)
T 2ifu_A 127 EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME---------------- 189 (307)
T ss_dssp TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------------
T ss_pred Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----------------
Confidence 77 77777777777777765542 45677777777777777777777777776665322
Q ss_pred CchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc
Q 002100 763 ESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH 817 (967)
Q Consensus 763 ~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~ 817 (967)
..+....++.++|.++..+|++++|+.+|++++ ..+
T Consensus 190 ------------------~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 190 ------------------NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred ------------------ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 000112466677777777777777777777777 544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.8e-14 Score=135.94 Aligned_cols=115 Identities=8% Similarity=-0.014 Sum_probs=92.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccch
Q 002100 666 VVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSF 745 (967)
Q Consensus 666 ~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 745 (967)
.+.++++.+|++...++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 35567778888888888888888888888888888888888888888888888888888888888888888888888865
Q ss_pred HHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHH
Q 002100 746 EAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRA 820 (967)
Q Consensus 746 ~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a 820 (967)
. .+++++|.+|..+|++++|+.+|+++++..+...
T Consensus 104 ~----------------------------------------~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 104 Y----------------------------------------TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp C----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred c----------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 5 6788888888888888888888888888655443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-13 Score=161.06 Aligned_cols=162 Identities=12% Similarity=0.031 Sum_probs=138.7
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
+.++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+| +..++..+|.+|..+|++++|+..|+++
T Consensus 4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 448999999999999999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh-
Q 002100 613 LTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRL- 691 (967)
Q Consensus 613 l~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~- 691 (967)
++++|++..++ ..++.++...+++++| +..++++++.+|.+..++..+|.++..+
T Consensus 84 l~~~p~~~~~~------~~la~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 84 SDAAPEHPGIA------LWLGHALEDAGQAEAA------------------AAAYTRAHQLLPEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp HHHCTTCHHHH------HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 99999999888 7889999999999999 9999999999999999999999999999
Q ss_pred --cCHHHHHHHHHHHHhcCCchhHHHHHHH
Q 002100 692 --NSQKAAMRSLRLARNYSTSEHEKLVYEG 719 (967)
Q Consensus 692 --g~~~~A~~~l~~al~~~p~~~~a~~~lg 719 (967)
|++++|+..++++++.+|+....+..++
T Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 140 DWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred ccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999999999999888887776
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.47 E-value=6e-15 Score=163.33 Aligned_cols=180 Identities=9% Similarity=-0.004 Sum_probs=160.7
Q ss_pred HHHHHHHHH----hHhhCCCCchhHHHHHHHHH------------hcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHH
Q 002100 536 KEKMMDLNT----ATELDPTLSYPYKYRAILLV------------EENKLAAAITEINRIIGFKV-SPDCLELRAWISIA 598 (967)
Q Consensus 536 ~~A~~~~~~----al~l~P~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~ 598 (967)
++|+..++. ++.+.|.. +|..+|.... .++++++|+..+++++..+| ...++..+|.++..
T Consensus 82 e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~ 159 (336)
T 1p5q_A 82 ERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK 159 (336)
T ss_dssp HHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888 88888886 4555554432 56788889999999888888 88999999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCc---------------hHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccch
Q 002100 599 LEDYDGALRDVRALLTLDPSY---------------MMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGS 663 (967)
Q Consensus 599 ~g~~~~A~~~~~~al~l~p~~---------------~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~a 663 (967)
.|++++|+..|++++.++|++ ..++ .+++.++...++|++|
T Consensus 160 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~------~nla~~~~~~g~~~~A------------------ 215 (336)
T 1p5q_A 160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH------LNLAMCHLKLQAFSAA------------------ 215 (336)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHH------HHHHHHHHHTTCHHHH------------------
T ss_pred CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHH------HHHHHHHHHcCCHHHH------------------
Confidence 999999999999999999998 3555 7889999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHH-HHHHHHHHhc
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEA-LAKAEESISI 741 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA-~~~~~~al~~ 741 (967)
+..+.++++.+|.++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++.+..
T Consensus 216 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 216 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 5567777644
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=134.59 Aligned_cols=187 Identities=16% Similarity=0.047 Sum_probs=124.7
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhc----CHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALE----DYDGALRDVRA 611 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g----~~~~A~~~~~~ 611 (967)
.+|+..|+++.+. .++.+++.+|.+|...+++++|+..|+++++.. ++.+++.+|.+|.. + ++++|+..|++
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 3455556666553 455566666666666666666666666655421 45555555555555 4 55555555555
Q ss_pred HHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH-
Q 002100 612 LLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR- 690 (967)
Q Consensus 612 al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~- 690 (967)
+++ +.++.+++.+|.+|..
T Consensus 79 A~~------------------------------------------------------------~g~~~a~~~Lg~~y~~g 98 (212)
T 3rjv_A 79 AVE------------------------------------------------------------AGSKSGEIVLARVLVNR 98 (212)
T ss_dssp HHH------------------------------------------------------------TTCHHHHHHHHHHHTCG
T ss_pred HHH------------------------------------------------------------CCCHHHHHHHHHHHHcC
Confidence 432 2344455556666655
Q ss_pred ---hcCHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCC
Q 002100 691 ---LNSQKAAMRSLRLARNYST--SEHEKLVYEGWILYD----TGHREEALAKAEESISIQRSFEAFFLKAYALADSSLN 761 (967)
Q Consensus 691 ---~g~~~~A~~~l~~al~~~p--~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~ 761 (967)
.+++++|+..|+++.+..| .++.+++.+|.+|.. .+++++|+.+|+++++. +.+.
T Consensus 99 ~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~--------------- 162 (212)
T 3rjv_A 99 QAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTG--------------- 162 (212)
T ss_dssp GGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTT---------------
T ss_pred CCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCH---------------
Confidence 6788888888888888887 457888888888888 78888888888888876 3222
Q ss_pred CCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc-c-----cHHHHHHHHHHHhccCcHHHHHHHHHH
Q 002100 762 PESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC-E-----KLDLAADCYMNALNIKHTRAHQGLARV 827 (967)
Q Consensus 762 ~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~-g-----~~~~A~~~~~~Al~~~~~~a~~~la~~ 827 (967)
.+++++|.+|... | ++++|+.+|++|.+.++..+...++.+
T Consensus 163 -------------------------~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~l 209 (212)
T 3rjv_A 163 -------------------------YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRI 209 (212)
T ss_dssp -------------------------HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5778888888754 2 788899999888888887776666654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-13 Score=159.78 Aligned_cols=157 Identities=10% Similarity=-0.031 Sum_probs=133.7
Q ss_pred cCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhh
Q 002100 566 ENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQ 644 (967)
Q Consensus 566 ~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~ 644 (967)
.|++++|++.|+++++.+| +..++..+|.++...|++++|+..|+++++++|++..++ ..++.++...+++++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV------ARLGRVRWTQQRHAE 75 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHH------HHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHCCCHHH
Confidence 4789999999999999999 899999999999999999999999999999999999988 788999999999999
Q ss_pred HhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 002100 645 ADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYD 724 (967)
Q Consensus 645 A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~ 724 (967)
| +..++++++.+|.+...++.+|.++...|++++|+..|+++++.+|++..++..+|.++..
T Consensus 76 A------------------~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 76 A------------------AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR 137 (568)
T ss_dssp H------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred H------------------HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred c---CChHHHHHHHHHHHhcccchH
Q 002100 725 T---GHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 725 ~---g~~~eA~~~~~~al~~~p~~~ 746 (967)
+ |++++|+..++++++.+|+..
T Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 138 LCDWRALDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp TTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred hhccccHHHHHHHHHHHHhcCCccc
Confidence 9 999999999999999999653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=138.25 Aligned_cols=211 Identities=9% Similarity=-0.080 Sum_probs=166.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhh-hhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHH
Q 002100 591 LRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHG-DNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHH 669 (967)
Q Consensus 591 ~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~ 669 (967)
..|.-+ ..+++..|.+.|.+++.++|+...+|....+ --.-+.+.....+..++ +..+.+
T Consensus 12 ~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a------------------~~~~~~ 72 (282)
T 4f3v_A 12 ESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRN------------------FGQLSG 72 (282)
T ss_dssp HHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGG------------------TTHHHH
T ss_pred HHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHH------------------HHHHHH
Confidence 334444 4789999999999999999999999832100 00004455555555555 677788
Q ss_pred HHhcCCCChH---------------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCCh
Q 002100 670 MLANDPGKSL---------------------LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHR 728 (967)
Q Consensus 670 ~l~~~p~~~~---------------------~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~ 728 (967)
.+++.|.... ++...+.++...|+|++|.+.|+.++...|++. +.+.+|.++++.+++
T Consensus 73 ~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~ 151 (282)
T 4f3v_A 73 SVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERW 151 (282)
T ss_dssp TTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCH
T ss_pred HhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCH
Confidence 8887775433 334477889999999999999999999999998 999999999999999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHH
Q 002100 729 EEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADC 808 (967)
Q Consensus 729 ~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~ 808 (967)
++|+..|+++....+.. ....+++++|.++..+|++++|+.+
T Consensus 152 ~dA~~~l~~a~~~~d~~--------------------------------------~~~~a~~~LG~al~~LG~~~eAl~~ 193 (282)
T 4f3v_A 152 TDVIDQVKSAGKWPDKF--------------------------------------LAGAAGVAHGVAAANLALFTEAERR 193 (282)
T ss_dssp HHHHHHHTTGGGCSCHH--------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhccCCcc--------------------------------------cHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999777543211 0125899999999999999999999
Q ss_pred HHHHhccC-----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc
Q 002100 809 YMNALNIK-----HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE 860 (967)
Q Consensus 809 ~~~Al~~~-----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 860 (967)
|++++.-. ...+++.+|.++..+|+.++|...|++++..+|+ ..++..+..
T Consensus 194 l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 194 LTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 99998633 3358999999999999999999999999999999 888777763
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-13 Score=146.13 Aligned_cols=153 Identities=11% Similarity=-0.004 Sum_probs=88.7
Q ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHhccCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCH-----HHHHHHH
Q 002100 787 QALNNLGSVYVDCEKLDLAADCYMNALNIKH--TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNA-----SAYEKRS 859 (967)
Q Consensus 787 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~~ 859 (967)
.+++++|.+|...|++++|+..|+++++.++ ..+++.+|.++..+|++++|+..|+++++.+|++. .++...
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~- 117 (281)
T 2c2l_A 39 VYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL- 117 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-
Confidence 4455555555555555555555555555322 23555555555555555555555555555555431 111111
Q ss_pred ccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHc-CChHHHHHH
Q 002100 860 EYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQ-LLHLRAAFHDSM-GDHLHTQRD 937 (967)
Q Consensus 860 ~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~-~~~~~a~~~~~~-g~~~~A~~~ 937 (967)
...++...........|.+..+...++.++ .|++++|++.++++++.+|+.. ....++.++... +.+++|.+.
T Consensus 118 ---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 192 (281)
T 2c2l_A 118 ---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDEL 192 (281)
T ss_dssp ---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 111222223333445677777777777655 5889999999999999988854 444455555555 678888888
Q ss_pred HHHHHhcC
Q 002100 938 CEAALCLD 945 (967)
Q Consensus 938 ~~~al~~~ 945 (967)
|+++.+..
T Consensus 193 f~~a~~~~ 200 (281)
T 2c2l_A 193 FSQVDEKR 200 (281)
T ss_dssp HHHSSCTT
T ss_pred HHhhhccc
Confidence 88887643
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=133.51 Aligned_cols=114 Identities=11% Similarity=-0.070 Sum_probs=68.2
Q ss_pred HHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHH
Q 002100 574 TEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLY 652 (967)
Q Consensus 574 ~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~ 652 (967)
..++++++++| ++++++.+|.++...|++++|+..|++++.++|+++.+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~------------------------------ 72 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY------------------------------ 72 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH------------------------------
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------------------------------
Confidence 34455555566 55566666666666666666666666655555555544
Q ss_pred hhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHH
Q 002100 653 DRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEAL 732 (967)
Q Consensus 653 ~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~ 732 (967)
|+.+|.++..+|++++|+..|+++++++|+++.+++++|.+|..+|++++|+
T Consensus 73 ----------------------------~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~ 124 (151)
T 3gyz_A 73 ----------------------------IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAK 124 (151)
T ss_dssp ----------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------------------------HHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 4555555555666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhcccch
Q 002100 733 AKAEESISIQRSF 745 (967)
Q Consensus 733 ~~~~~al~~~p~~ 745 (967)
..|++++++.|+.
T Consensus 125 ~~~~~al~l~~~~ 137 (151)
T 3gyz_A 125 ECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHCCCH
T ss_pred HHHHHHHHhCCCH
Confidence 6666666666543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=8.8e-14 Score=164.18 Aligned_cols=185 Identities=12% Similarity=0.149 Sum_probs=170.5
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCc----------HHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc--CH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENK----------LAAAITEINRIIGFKV-SPDCLELRAWISIALE--DY 602 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g--~~ 602 (967)
++|+..++++++++|++..+|..++.++...++ +++|++.+++++..+| +..+|..++++....+ ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 789999999999999999999999999999998 9999999999999999 9999999999999999 77
Q ss_pred HHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhh-chhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH
Q 002100 603 DGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQ-QWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR 681 (967)
Q Consensus 603 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~-~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~ 681 (967)
++|++.+.++++++|.+..+| ..++.+....+ .++++ ++.+.++++.+|.+..+|
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW------~~R~~~l~~l~~~~~~e------------------l~~~~~~I~~~p~n~saW 181 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCW------DYRRFVAAQAAVAPAEE------------------LAFTDSLITRNFSNYSSW 181 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTCCCHHHH------------------HHHHHTTTTTTCCCHHHH
T ss_pred HHHHHHHHHHHhhccccccHH------HHHHHHHHHcCCChHHH------------------HHHHHHHHHHCCCCccHH
Confidence 999999999999999999999 66777877777 66666 999999999999999999
Q ss_pred HHHHHHHHHh--------------cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHH------------HHHHH
Q 002100 682 FRQSLLLLRL--------------NSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREE------------ALAKA 735 (967)
Q Consensus 682 ~~~g~~~~~~--------------g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~e------------A~~~~ 735 (967)
..++.++..+ +.+++|++.+.+++..+|++..+|+++++++...+++++ |+..|
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f 261 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCF 261 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEe
Confidence 9999999885 678999999999999999999999999999999998776 56667
Q ss_pred HHHHhcccc
Q 002100 736 EESISIQRS 744 (967)
Q Consensus 736 ~~al~~~p~ 744 (967)
.+++.++|.
T Consensus 262 ~~~i~~~~~ 270 (567)
T 1dce_A 262 SRPLTVGSR 270 (567)
T ss_dssp EEEECTTBT
T ss_pred ccceecccc
Confidence 777777763
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-13 Score=145.83 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=57.3
Q ss_pred chhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc
Q 002100 522 VGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE 600 (967)
Q Consensus 522 ~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g 600 (967)
.|..+...+.| ++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++| +..+++.+|.+|..+|
T Consensus 10 ~g~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 10 QGNRLFVGRKY---PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHHHHHHTTCH---HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCH---HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34444444444 6666666666666666666666666666666666666666666666666 5566666666666666
Q ss_pred CHHHHHHHHHHHHHhCCCch
Q 002100 601 DYDGALRDVRALLTLDPSYM 620 (967)
Q Consensus 601 ~~~~A~~~~~~al~l~p~~~ 620 (967)
++++|+..|+++++++|++.
T Consensus 87 ~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 87 SYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCccch
Confidence 66666666666666655543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.5e-14 Score=155.58 Aligned_cols=145 Identities=11% Similarity=0.099 Sum_probs=130.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCch---------------hHHHHHHHHHHHHcCCh
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSE---------------HEKLVYEGWILYDTGHR 728 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~---------------~~a~~~lg~~~~~~g~~ 728 (967)
+..+.++++.+|.....+..+|.++...|++++|+..|+++++..|++ ..++.++|.++..+|++
T Consensus 133 ~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~ 212 (336)
T 1p5q_A 133 KESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 212 (336)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred cchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 666777777788889999999999999999999999999999999998 58999999999999999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHH
Q 002100 729 EEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADC 808 (967)
Q Consensus 729 ~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~ 808 (967)
++|+..|+++++++|++. .+++++|.+|..+|++++|+.+
T Consensus 213 ~~A~~~~~~al~~~p~~~----------------------------------------~a~~~lg~~~~~~g~~~~A~~~ 252 (336)
T 1p5q_A 213 SAAIESCNKALELDSNNE----------------------------------------KGLSRRGEAHLAVNDFELARAD 252 (336)
T ss_dssp HHHHHHHHHHHHHCTTCH----------------------------------------HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcH----------------------------------------HHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999766 7999999999999999999999
Q ss_pred HHHHhccC--cHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHc
Q 002100 809 YMNALNIK--HTRAHQGLARVYHLKNQRKAA-YDEMTKLIEKA 848 (967)
Q Consensus 809 ~~~Al~~~--~~~a~~~la~~~~~~g~~~~A-~~~~~~al~~~ 848 (967)
|+++++.+ ...++..++.++..+|++++| ...|++++...
T Consensus 253 ~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 253 FQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999854 456999999999999999998 55777776643
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-13 Score=143.63 Aligned_cols=186 Identities=12% Similarity=0.039 Sum_probs=164.8
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHH-------HHHHHhcCcHHHHHHHHHHHhccCC-Ch-------------------
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYR-------AILLVEENKLAAAITEINRIIGFKV-SP------------------- 586 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p-~~------------------- 586 (967)
+...|...|.++++++|+...+|..+ +.++...++..+++..+.+.+++.| ..
T Consensus 21 d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~ 100 (282)
T 4f3v_A 21 SEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTS 100 (282)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSS
T ss_pred CHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCC
Confidence 66999999999999999999999999 8999999999999999999999877 22
Q ss_pred --hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchH
Q 002100 587 --DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSL 664 (967)
Q Consensus 587 --~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al 664 (967)
++...++.++...|+|++|.+.|..++...|++. .. +.++.++...++|++| +
T Consensus 101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~------~~~a~l~~~~~r~~dA------------------~ 155 (282)
T 4f3v_A 101 PLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VA------WMKAVVYGAAERWTDV------------------I 155 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HH------HHHHHHHHHTTCHHHH------------------H
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HH------HHHHHHHHHcCCHHHH------------------H
Confidence 3445688999999999999999999999999877 65 8889999999999999 7
Q ss_pred HHHHHHHhcC-CCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Cc-hhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 665 AVVHHMLAND-PGK-SLLRFRQSLLLLRLNSQKAAMRSLRLARNYS--TS-EHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 665 ~~~~~~l~~~-p~~-~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~--p~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
..+.++.... |.. ..+++.+|.++..+|++++|+..|++++... |. ..++++++|.++..+|+.++|...|++++
T Consensus 156 ~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 156 DQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777666542 211 3588999999999999999999999998654 65 67899999999999999999999999999
Q ss_pred hcccc
Q 002100 740 SIQRS 744 (967)
Q Consensus 740 ~~~p~ 744 (967)
..+|+
T Consensus 236 a~~P~ 240 (282)
T 4f3v_A 236 TTHPE 240 (282)
T ss_dssp HHSCC
T ss_pred hcCCc
Confidence 99997
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=130.56 Aligned_cols=127 Identities=14% Similarity=-0.023 Sum_probs=95.8
Q ss_pred HHHHHHhccCcHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchH
Q 002100 807 DCYMNALNIKHTR--AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYP 884 (967)
Q Consensus 807 ~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~ 884 (967)
..|+++++.++.. +++.+|.++...|++++|+..|+++++ ++|+++.+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------------------~~p~~~~~ 57 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV------------------------------LDHYDSRF 57 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------HCTTCHHH
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH------------------------------cCcccHHH
Confidence 3456666655443 566666666666666666666555554 55566777
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 002100 885 YRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 885 ~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
|..+|.++...|++++|+..|+++++++|+ +.+++.+|.++..+|++++|+..|+++++++|++++...+..+++...+
T Consensus 58 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 137 (148)
T 2vgx_A 58 FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence 888888899999999999999999999888 4688889999999999999999999999998888777666666655443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-13 Score=130.58 Aligned_cols=129 Identities=12% Similarity=0.058 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCH
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKE 898 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~ 898 (967)
+.+.++|..++..|++++|+..|+++|+.+|+++.. .++...|.+..+|.++|.++.+.|++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~------------------~a~~~~~~~a~a~~n~g~al~~Lgr~ 73 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE------------------EAFDHAGFDAFCHAGLAEALAGLRSF 73 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT------------------SCCCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch------------------hhhhhccchHHHHHHHHHHHHHCCCH
Confidence 367788889999999999999999999999874321 12233344556999999999999999
Q ss_pred HHHHHHHHHHHhc-------CCCh-HHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhhhc
Q 002100 899 AEAIAELSRAIAF-------KPDL-QLL----HLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNEQ 965 (967)
Q Consensus 899 ~eAi~~~~kal~~-------~p~~-~~~----~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~~~ 965 (967)
++|+..|+++|++ +|+. .+| +++|.++..+|++++|+..|+++++++|++..+..-+.++++.++.+
T Consensus 74 ~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~ 152 (159)
T 2hr2_A 74 DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDR 152 (159)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9995 588 99999999999999999999999999999988877777777666543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.39 E-value=9.7e-12 Score=132.49 Aligned_cols=244 Identities=9% Similarity=-0.013 Sum_probs=185.1
Q ss_pred HHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHh
Q 002100 466 VMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTA 545 (967)
Q Consensus 466 ~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~a 545 (967)
-.|-.|+|..++....+.-..++......+.|++..+|++... . .-.+...+......|.. ..|+..+++.
T Consensus 22 n~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~-~~~~~~~a~~~la~~~~-~~a~~~l~~l 92 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ-------D-PTSKLGKVLDLYVQFLD-TKNIEELENL 92 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC-------C-SSSTTHHHHHHHHHHHT-TTCCHHHHHT
T ss_pred HHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC-------C-CCCHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 4567899999998544322224466777788999999987531 1 11122222333333322 3388899999
Q ss_pred HhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC---ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----
Q 002100 546 TELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV---SPDCLELRAWISIALEDYDGALRDVRALLTLDPS---- 618 (967)
Q Consensus 546 l~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~---- 618 (967)
++..+....++..+|.++...|++++|++.+.+.+..+| +.+++...+.+++.+|+.+.|.+.+++..+.+|+
T Consensus 93 ~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~ 172 (310)
T 3mv2_B 93 LKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSG 172 (310)
T ss_dssp TTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccccc
Confidence 887766677788999999999999999999999999986 6889999999999999999999999999999994
Q ss_pred -chHHhhhhhhhhhHhhhHHHhh--chhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC--ChHHHHHHHHHHHHhcC
Q 002100 619 -YMMFYGQLHGDNLVETLQPLVQ--QWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG--KSLLRFRQSLLLLRLNS 693 (967)
Q Consensus 619 -~~~~~~~~~~~~~~~~l~~~~~--~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~--~~~~~~~~g~~~~~~g~ 693 (967)
+..... ..-+.+....+ ++.+| +..|+++.+..|. .+..+++ ++..+|+
T Consensus 173 ~d~~l~~-----Laea~v~l~~g~~~~q~A------------------~~~f~El~~~~p~~~~~~lLln---~~~~~g~ 226 (310)
T 3mv2_B 173 DNEMILN-----LAESYIKFATNKETATSN------------------FYYYEELSQTFPTWKTQLGLLN---LHLQQRN 226 (310)
T ss_dssp HHHHHHH-----HHHHHHHHHHTCSTTTHH------------------HHHHHHHHTTSCSHHHHHHHHH---HHHHHTC
T ss_pred chHHHHH-----HHHHHHHHHhCCccHHHH------------------HHHHHHHHHhCCCcccHHHHHH---HHHHcCC
Confidence 222220 12232333333 55555 9999999888887 3344444 8999999
Q ss_pred HHHHHHHHHHHHhc----------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 694 QKAAMRSLRLARNY----------STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 694 ~~~A~~~l~~al~~----------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
+++|...++.+++. +|++++++.++..+...+|+ +|.++++++.+.+|+++
T Consensus 227 ~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 227 IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 99999999988776 48899999999999999998 89999999999999887
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-12 Score=125.52 Aligned_cols=127 Identities=13% Similarity=0.003 Sum_probs=96.1
Q ss_pred HHHHHHhccCcHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchH
Q 002100 807 DCYMNALNIKHTR--AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYP 884 (967)
Q Consensus 807 ~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~ 884 (967)
..|+++++.+|.. +++.+|.+++..|++++|+..|+++++ .+|+++.+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------------------~~p~~~~~ 54 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM------------------------------LDHYDARY 54 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------HCTTCHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH------------------------------hCCccHHH
Confidence 3455555554443 566666666666666666666555554 55667777
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 002100 885 YRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 885 ~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
|..+|.++...|++++|+..|+++++++|+ +.+++.+|.++..+|++++|+..|+++++++|++++...+..++....+
T Consensus 55 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 55 FLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 888999999999999999999999999998 4688899999999999999999999999999988887777776665543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=9.1e-12 Score=127.42 Aligned_cols=128 Identities=20% Similarity=0.157 Sum_probs=101.6
Q ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----C
Q 002100 787 QALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----C 862 (967)
Q Consensus 787 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----~ 862 (967)
..++++|.++...|++++|+..|++++.+ ...++..+|.++...|++++|+..|+++++.+|++..++..+|.. +
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 56789999999999999999999999855 456999999999999999999999999999888877777776632 6
Q ss_pred ChHHHHHHHHHhhccCCCCc----------------hHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 002100 863 DRDMAKSDLSMATQLDPMRT----------------YPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL 915 (967)
Q Consensus 863 ~~~~A~~~l~~al~l~p~~~----------------~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~ 915 (967)
++++|+..|++++++.|.+. .++.++|.++...|++++|+..|+++++..|+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 77777777777777666655 666666777777777777777777777666664
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-11 Score=113.68 Aligned_cols=131 Identities=23% Similarity=0.258 Sum_probs=93.2
Q ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChH
Q 002100 788 ALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRD 865 (967)
Q Consensus 788 a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 865 (967)
+++.+|.++...|++++|+..|+++++. +...++..+|.++...|++++|+..++++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--------------------- 61 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA--------------------- 61 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHH---------------------
Confidence 4555555555555555555555555542 22335555555555555555555555544
Q ss_pred HHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 866 MAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCL 944 (967)
Q Consensus 866 ~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 944 (967)
++.+|.+..++..+|.++...|++++|+..++++++..|. ..++..+|.++...|++++|...++++++.
T Consensus 62 ---------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 62 ---------LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp ---------HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ---------HHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 4455566677788889999999999999999999998887 458888999999999999999999999998
Q ss_pred CCCc
Q 002100 945 DPNH 948 (967)
Q Consensus 945 ~P~~ 948 (967)
+|++
T Consensus 133 ~~~~ 136 (136)
T 2fo7_A 133 DPRS 136 (136)
T ss_dssp STTC
T ss_pred CCCC
Confidence 8863
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-12 Score=124.10 Aligned_cols=83 Identities=11% Similarity=-0.042 Sum_probs=41.2
Q ss_pred HHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 002100 541 DLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSY 619 (967)
Q Consensus 541 ~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 619 (967)
.|+++++++|++..+++.+|.+++..|++++|+..|++++..+| ++.+++.+|.++..+|++++|+..|++++.++|++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34444555555555555555555555555555555555555555 44455555555555555555555555444444444
Q ss_pred hHHh
Q 002100 620 MMFY 623 (967)
Q Consensus 620 ~~~~ 623 (967)
+.++
T Consensus 89 ~~~~ 92 (148)
T 2vgx_A 89 PRFP 92 (148)
T ss_dssp THHH
T ss_pred chHH
Confidence 4433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=9.5e-13 Score=155.35 Aligned_cols=189 Identities=12% Similarity=0.092 Sum_probs=169.9
Q ss_pred hcCc-HHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC----------HHHHHHHHHHHHHhCCCchHHhhhhhhhhhH
Q 002100 565 EENK-LAAAITEINRIIGFKV-SPDCLELRAWISIALED----------YDGALRDVRALLTLDPSYMMFYGQLHGDNLV 632 (967)
Q Consensus 565 ~~g~-~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 632 (967)
..+. .++|++.+++++.++| +..+|..++.++..+++ +++|++.+.++++.+|++..+| +.+
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW------~hR 113 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTW------HHR 113 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH------HHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHH------HHH
Confidence 3344 4688999999999999 89999999999999998 9999999999999999999999 777
Q ss_pred hhhHHHhh--chhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCC
Q 002100 633 ETLQPLVQ--QWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLN-SQKAAMRSLRLARNYST 709 (967)
Q Consensus 633 ~~l~~~~~--~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~l~~al~~~p 709 (967)
+.+....+ +|+++ +..+.++++.+|.+..+|..++.++...+ .++++++.+.++++.+|
T Consensus 114 ~w~l~~l~~~~~~~e------------------l~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p 175 (567)
T 1dce_A 114 CWLLSRLPEPNWARE------------------LELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 175 (567)
T ss_dssp HHHHHTCSSCCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred HHHHHHcccccHHHH------------------HHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC
Confidence 88888888 56777 99999999999999999999999999999 99999999999999999
Q ss_pred chhHHHHHHHHHHHHc--------------CChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHH
Q 002100 710 SEHEKLVYEGWILYDT--------------GHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEA 775 (967)
Q Consensus 710 ~~~~a~~~lg~~~~~~--------------g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~ 775 (967)
++..+|.+++.++... +.+++|++.+.+++.++|++.
T Consensus 176 ~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~----------------------------- 226 (567)
T 1dce_A 176 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ----------------------------- 226 (567)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS-----------------------------
T ss_pred CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc-----------------------------
Confidence 9999999999999885 567999999999999999776
Q ss_pred hcCCCCCCchHHHHHHhHHHHHhcccHHH------------HHHHHHHHhccCc
Q 002100 776 LRCPSDGLRKGQALNNLGSVYVDCEKLDL------------AADCYMNALNIKH 817 (967)
Q Consensus 776 ~~~~~~~~~~~~a~~~lg~~~~~~g~~~~------------A~~~~~~Al~~~~ 817 (967)
.+|+.++.++...+++++ |+.+|.+++.+++
T Consensus 227 -----------saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~ 269 (567)
T 1dce_A 227 -----------SAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGS 269 (567)
T ss_dssp -----------HHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTB
T ss_pred -----------cHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccc
Confidence 789999999988888766 6666777776554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-11 Score=113.30 Aligned_cols=133 Identities=15% Similarity=0.147 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHH
Q 002100 588 CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVV 667 (967)
Q Consensus 588 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~ 667 (967)
+++.+|.++...|++++|+..++++++.+|++...+ ..++.++...+++++| +..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~~A------------------~~~~ 58 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW------YNLGNAYYKQGDYDEA------------------IEYY 58 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHHTCHHHH------------------HHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHH------HHHHHHHHHhcCHHHH------------------HHHH
Confidence 344555555555555555555555555555554444 3445555555555555 5555
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccc
Q 002100 668 HHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRS 744 (967)
Q Consensus 668 ~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 744 (967)
.++++..|..+..++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++..+|+
T Consensus 59 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 59 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 55555556666666667777778888888888888888888888888888888888888888888888888877763
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-12 Score=122.82 Aligned_cols=118 Identities=10% Similarity=-0.094 Sum_probs=78.2
Q ss_pred HHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002100 540 MDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPS 618 (967)
Q Consensus 540 ~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 618 (967)
..|+++++++|++..+++.+|..++..|++++|+..|++++..+| ++.+++.+|.++..+|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 356667777777777777777777777777777777777777777 6777777777777777777777777777777777
Q ss_pred chHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH
Q 002100 619 YMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR 681 (967)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~ 681 (967)
++.++ +.++.++...+++++| +..|+++++.+|.++...
T Consensus 85 ~~~~~------~~lg~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 85 EPRFP------FHAAECHLQLGDLDGA------------------ESGFYSARALAAAQPAHE 123 (142)
T ss_dssp CTHHH------HHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHTCGGGH
T ss_pred CcHHH------HHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCcchH
Confidence 66666 5556666666666665 555666665555554443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-11 Score=123.24 Aligned_cols=132 Identities=11% Similarity=0.112 Sum_probs=101.1
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhh
Q 002100 555 PYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVET 634 (967)
Q Consensus 555 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 634 (967)
.++.+|..+...|++++|+..|++++ +|++.++..+|.+|...|++++|+..|++++.++|++..++ ..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~lg~ 79 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAY------FQRGM 79 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHH------HHHHH
Confidence 35667777777777777777777774 44667777777777777777777777777777777777666 66677
Q ss_pred hHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh----------------HHHHHHHHHHHHhcCHHHHH
Q 002100 635 LQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS----------------LLRFRQSLLLLRLNSQKAAM 698 (967)
Q Consensus 635 l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~----------------~~~~~~g~~~~~~g~~~~A~ 698 (967)
++...+++++| +..+.++++..|.+. .+++.+|.++...|++++|+
T Consensus 80 ~~~~~~~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 80 LYYQTEKYDLA------------------IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp HHHHTTCHHHH------------------HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHH------------------HHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence 77777777777 777777777666655 78888999999999999999
Q ss_pred HHHHHHHhcCCchh
Q 002100 699 RSLRLARNYSTSEH 712 (967)
Q Consensus 699 ~~l~~al~~~p~~~ 712 (967)
..|+++++.+|++.
T Consensus 142 ~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 142 EQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHTTCCSGG
T ss_pred HHHHHHHHcCcccc
Confidence 99999999888763
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.7e-12 Score=115.99 Aligned_cols=113 Identities=23% Similarity=0.239 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHH
Q 002100 820 AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEA 899 (967)
Q Consensus 820 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~ 899 (967)
.+..+|..++..|++++|+..|+++++ ++|+++.++.++|.++...|+++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~------------------------------~~p~~~~~~~~~a~~~~~~~~~~ 55 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIK------------------------------RAPEDARGYSNRAAALAKLMSFP 55 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH------------------------------hCCCChHHHHHHHHHHHHhcCHH
Confidence 556666666666666666666555554 55566788899999999999999
Q ss_pred HHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCchhHHHHHHHHHhhh
Q 002100 900 EAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLD------PNHTDTLELYDKATERV 962 (967)
Q Consensus 900 eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------P~~~~~l~l~~r~~~~~ 962 (967)
+|+..|+++++++|+ ..+++.+|.++..+|++++|+..|+++++++ |+++.+...+.++.+++
T Consensus 56 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 56 EAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999999 4599999999999999999999999999999 99999999998887654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.8e-11 Score=129.15 Aligned_cols=103 Identities=15% Similarity=0.060 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHH---hcCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLAR---NYSTSE----HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFL 750 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al---~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 750 (967)
..++..+|.+|...|++++|+..|++++ +..|++ ..+++++|.+|..+|++++|+..+++++++.++..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~---- 230 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN---- 230 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC----
Confidence 3467889999999999999999999999 445553 26899999999999999999999999997764211
Q ss_pred HHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHH-HHHHHHHhc
Q 002100 751 KAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLA-ADCYMNALN 814 (967)
Q Consensus 751 ~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A-~~~~~~Al~ 814 (967)
.....+.+++++|.+|...|++++| ..+|++|+.
T Consensus 231 ------------------------------~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 231 ------------------------------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp ------------------------------BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ------------------------------cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1223457899999999999999999 788999886
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.7e-12 Score=123.33 Aligned_cols=135 Identities=11% Similarity=0.119 Sum_probs=97.2
Q ss_pred HHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHH
Q 002100 796 YVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSM 873 (967)
Q Consensus 796 ~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~ 873 (967)
+...|++++|+..|+++++ ++...++..+|.++...|++++|+..|+++++.+|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p------------------------ 75 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG------------------------ 75 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC------------------------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------------------
Confidence 4556677777777777766 33445677777777777777766666666665555
Q ss_pred hhccCCCCchHHHHHHHH-HHhCCCH--HHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 002100 874 ATQLDPMRTYPYRYRAAV-LMDDHKE--AEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 874 al~l~p~~~~~~~~la~~-~~~~g~~--~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~ 949 (967)
+++.++..+|.+ +...|++ ++|+..|+++++.+|+ ..+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 76 ------~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 76 ------ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp ------SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred ------CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 555667777877 7788888 8999999999988888 45888889999999999999999999999998887
Q ss_pred hHHHHHHHHHh
Q 002100 950 DTLELYDKATE 960 (967)
Q Consensus 950 ~~l~l~~r~~~ 960 (967)
....++..+..
T Consensus 150 ~~~~~~~~i~~ 160 (177)
T 2e2e_A 150 NRTQLVESINM 160 (177)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 76666555554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-13 Score=156.94 Aligned_cols=147 Identities=8% Similarity=0.015 Sum_probs=121.6
Q ss_pred hcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---------------hHHhhhhhh
Q 002100 565 EENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSY---------------MMFYGQLHG 628 (967)
Q Consensus 565 ~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~~~~ 628 (967)
..+++++|+..|++++..+| ...++..+|.+++..|+|++|+..|+++++++|++ ..++
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~----- 320 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF----- 320 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH-----
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHH-----
Confidence 44566667777766666666 67777777777777778888887788777777776 3455
Q ss_pred hhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 002100 629 DNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYS 708 (967)
Q Consensus 629 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~ 708 (967)
.+++.++..+++|++| +..+.++++.+|.+..+++++|.+|..+|++++|+..|+++++++
T Consensus 321 -~nla~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 321 -LNLAMCYLKLREYTKA------------------VECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp -HHHHHHHHHTTCHHHH------------------HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHhcCHHHH------------------HHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 7889999999999999 999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHH
Q 002100 709 TSEHEKLVYEGWILYDTGHREEALAKA 735 (967)
Q Consensus 709 p~~~~a~~~lg~~~~~~g~~~eA~~~~ 735 (967)
|++..++..++.++...+++++|.+..
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~~ 408 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRRI 408 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.2e-11 Score=128.88 Aligned_cols=176 Identities=11% Similarity=0.089 Sum_probs=142.1
Q ss_pred CCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-Ch------hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHH
Q 002100 550 PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SP------DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMF 622 (967)
Q Consensus 550 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~------~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 622 (967)
|.....+...+..+...|+|++|++.+.++++..+ .. ..++.+|.++...|++++|+..+++++...+.....
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 33445567788899999999999999999998877 32 356778899999999999999999999876554322
Q ss_pred hhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHH---hcCCCCh----HHHHHHHHHHHHhcCHH
Q 002100 623 YGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHML---ANDPGKS----LLRFRQSLLLLRLNSQK 695 (967)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l---~~~p~~~----~~~~~~g~~~~~~g~~~ 695 (967)
+........+|.++...++|++| +..+.+++ +..|.+. .+++++|.+|..+|+++
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A------------------~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~ 213 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKG------------------IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYE 213 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHH
Confidence 21122337889999999999999 88888888 4555543 58899999999999999
Q ss_pred HHHHHHHHHHhcCCc------hhHHHHHHHHHHHHcCChHHH-HHHHHHHHhccc
Q 002100 696 AAMRSLRLARNYSTS------EHEKLVYEGWILYDTGHREEA-LAKAEESISIQR 743 (967)
Q Consensus 696 ~A~~~l~~al~~~p~------~~~a~~~lg~~~~~~g~~~eA-~~~~~~al~~~p 743 (967)
+|+..++++++..++ ...+++++|.++..+|++++| ..++++++.+..
T Consensus 214 ~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 999999999987643 267899999999999999999 888999996654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.7e-11 Score=112.15 Aligned_cols=110 Identities=15% Similarity=0.156 Sum_probs=81.6
Q ss_pred HHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCC
Q 002100 786 GQALNNLGSVYVDCEKLDLAADCYMNALNIKH--TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCD 863 (967)
Q Consensus 786 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 863 (967)
+.++.++|.+++..|+|++|+.+|++|++++| ..++.++|.+|..+|++++|++.++++++++|++...+..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~----- 82 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI----- 82 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH-----
Confidence 46788899999999999999999999988544 45888899999999999999999988888887533222211
Q ss_pred hHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHH
Q 002100 864 RDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLL 918 (967)
Q Consensus 864 ~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~ 918 (967)
..++.++|.++...|++++|++.|+++++..|+++..
T Consensus 83 ------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~ 119 (127)
T 4gcn_A 83 ------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119 (127)
T ss_dssp ------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHH
T ss_pred ------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHH
Confidence 2345667777777777777777777777776665543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-11 Score=112.86 Aligned_cols=107 Identities=12% Similarity=0.117 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhh
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALAD 757 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~ 757 (967)
+..+..+|..+++.|+|++|+..|+++++++|+++.++.++|.+|..+|++++|+..++++++++|+..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~----------- 76 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR----------- 76 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc-----------
Confidence 456788999999999999999999999999999999999999999999999999999999999998543
Q ss_pred cCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc
Q 002100 758 SSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH 817 (967)
Q Consensus 758 ~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~ 817 (967)
......+.++.++|.++..+|++++|+++|+++++..+
T Consensus 77 ----------------------~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 77 ----------------------ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred ----------------------hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 01112346788899999999999999999999887443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-11 Score=117.16 Aligned_cols=125 Identities=16% Similarity=0.070 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHc--------cCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHH
Q 002100 820 AHQGLARVYHLKNQRKAAYDEMTKLIEKA--------RNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAV 891 (967)
Q Consensus 820 a~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~ 891 (967)
.+..+|..++..|++++|+..|+++++.. |.+.. ....+|.+..++.++|.+
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~nla~~ 72 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPE--------------------WVELDRKNIPLYANMSQC 72 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHH--------------------HHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHH--------------------HHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666652 22111 123457778899999999
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch-hHHHHHHHHHhhhhh
Q 002100 892 LMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHT-DTLELYDKATERVNE 964 (967)
Q Consensus 892 ~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~-~~l~l~~r~~~~~~~ 964 (967)
|.+.|++++|+..++++++++|+ ..+++.+|.+|..+|++++|+.+|+++++++|+++ .+...+.++.....+
T Consensus 73 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 73 YLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 46999999999999999999999999999999999 777777777766543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-10 Score=122.71 Aligned_cols=186 Identities=10% Similarity=0.056 Sum_probs=120.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYST--SEHEKLVYEGWILYDTGHREEALAKAEESISI 741 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p--~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 741 (967)
+..+++.++..+.....++.+|.++...|++++|++.+.+.+..+| ++.+++...+.++..+|+.+.|.+.+++..+.
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5666666655544455556677777777777777777777777665 66677777777777777777777777777666
Q ss_pred ccc-----hHHHH--HHHH-HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHh
Q 002100 742 QRS-----FEAFF--LKAY-ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNAL 813 (967)
Q Consensus 742 ~p~-----~~~~~--~~~~-~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 813 (967)
+|+ ..... ..+| .++. ..++...+..+++++....++ +.....+++ ++..+|++++|...++.++
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~---g~~~~q~A~~~f~El~~~~p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFAT---NKETATSNFYYYEELSQTFPT-WKTQLGLLN---LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH---TCSTTTHHHHHHHHHHTTSCS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHH
T ss_pred CccccccchHHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhCCC-cccHHHHHH---HHHHcCCHHHHHHHHHHHH
Confidence 662 22111 1111 1111 123455566666666544332 112233444 7889999999999998776
Q ss_pred c------------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHH
Q 002100 814 N------------IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKR 858 (967)
Q Consensus 814 ~------------~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 858 (967)
+ ++++.++.+++.+...+|+ +|.++++++.+.+|+++.+.-..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence 6 3455688888888888887 88899999999999888775443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-10 Score=126.10 Aligned_cols=172 Identities=15% Similarity=0.110 Sum_probs=124.3
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHhccCC-Chh------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhh
Q 002100 557 KYRAILLVEENKLAAAITEINRIIGFKV-SPD------CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGD 629 (967)
Q Consensus 557 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~------~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 629 (967)
...+..+...|++++|+..+++++...+ .+. .+..+|.++...+++++|+..|++++.+.+.....+.
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~----- 153 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ----- 153 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH-----
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH-----
Confidence 3445666677777777777777776555 322 2334666666666777777777777665554322110
Q ss_pred hhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh---
Q 002100 630 NLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARN--- 706 (967)
Q Consensus 630 ~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~--- 706 (967)
...++..+|.+|..+|++++|+..|+++++
T Consensus 154 -----------------------------------------------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 186 (293)
T 3u3w_A 154 -----------------------------------------------NLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 023577889999999999999999999994
Q ss_pred ----cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCC
Q 002100 707 ----YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDG 782 (967)
Q Consensus 707 ----~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~ 782 (967)
..+....+++++|.+|..+|++++|+..+++++++.+... ..
T Consensus 187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~----------------------------------~~ 232 (293)
T 3u3w_A 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN----------------------------------SM 232 (293)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------------------------------BC
T ss_pred hcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC----------------------------------cH
Confidence 2233456889999999999999999999999998776321 12
Q ss_pred CchHHHHHHhHHHHHhccc-HHHHHHHHHHHhc
Q 002100 783 LRKGQALNNLGSVYVDCEK-LDLAADCYMNALN 814 (967)
Q Consensus 783 ~~~~~a~~~lg~~~~~~g~-~~~A~~~~~~Al~ 814 (967)
...+.+++++|.+|..+|+ +++|+.+|++|+.
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 2345789999999999994 6999999999886
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-11 Score=120.97 Aligned_cols=87 Identities=9% Similarity=0.098 Sum_probs=43.3
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHH-HHHhcCH--HHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWI-SIALEDY--DGALRDVRA 611 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~-~~~~g~~--~~A~~~~~~ 611 (967)
++|+..++++++.+|+++.+++.+|.++...|++++|+..|++++..+| ++.++..+|.+ +...|++ ++|+..+++
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~ 106 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK 106 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555555555 44445555554 4444444 444444444
Q ss_pred HHHhCCCchHH
Q 002100 612 LLTLDPSYMMF 622 (967)
Q Consensus 612 al~l~p~~~~~ 622 (967)
++..+|++..+
T Consensus 107 al~~~p~~~~~ 117 (177)
T 2e2e_A 107 ALALDSNEITA 117 (177)
T ss_dssp HHHHCTTCHHH
T ss_pred HHHhCCCcHHH
Confidence 44444444333
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-10 Score=113.57 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHH
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAV 666 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~ 666 (967)
..+..+|.++...|++++|+..|++++..+|++..++ ..++.++...++|++| +..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------~~~a~~~~~~~~~~~A------------------~~~ 69 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYY------GNRSLAYLRTECYGYA------------------LGD 69 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH------HHHHHHHHHTTCHHHH------------------HHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH------HHHHHHHHHcCCHHHH------------------HHH
Confidence 3455556666666666666666666666666655555 4555556666666665 566
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHH--HHHHHcCChHHHHHHHHHHHhcc
Q 002100 667 VHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEG--WILYDTGHREEALAKAEESISIQ 742 (967)
Q Consensus 667 ~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg--~~~~~~g~~~eA~~~~~~al~~~ 742 (967)
+.++++.+|.++..++.+|.++...|++++|+..|+++++.+|++..++..++ ..+...|++++|+..++++..+.
T Consensus 70 ~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 70 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 66666666666667777788888888888888888888888888877774444 44777888888888888776443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=9e-11 Score=109.04 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHH
Q 002100 588 CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVV 667 (967)
Q Consensus 588 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~ 667 (967)
.+..+|..+...|++++|+..|+++++++|++..++ ..++.++...++|++| +..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~------~~~a~~~~~~~~~~~A------------------~~~~ 61 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGY------SNRAAALAKLMSFPEA------------------IADC 61 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCHHHH------------------HHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH------HHHHHHHHHhcCHHHH------------------HHHH
Confidence 344444444444444444444444444444444444 3344444444444444 4444
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CchhHHHHHHHHHHH
Q 002100 668 HHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYS------TSEHEKLVYEGWILY 723 (967)
Q Consensus 668 ~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~------p~~~~a~~~lg~~~~ 723 (967)
.++++.+|.++.+++.+|.++..+|++++|+..|+++++.+ |++..++..++.+..
T Consensus 62 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 62 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 44444444445555556666666666666666666666666 666666665555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=8.3e-12 Score=126.49 Aligned_cols=156 Identities=8% Similarity=-0.088 Sum_probs=113.0
Q ss_pred HHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCch----------------HH
Q 002100 560 AILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYM----------------MF 622 (967)
Q Consensus 560 a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~----------------~~ 622 (967)
+......+++++|.+.++......+ ....+..+|..+...|+|++|+..|++++.+.|+++ .+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 4444555666666666655444444 566777788888888888888888888888777766 44
Q ss_pred hhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHH
Q 002100 623 YGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLR 702 (967)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~ 702 (967)
+ ..++.++...++|++| +..+.++++.+|.++.+++.+|.++..+|++++|+..|+
T Consensus 91 ~------~~la~~~~~~~~~~~A------------------~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 91 N------LNLATCYNKNKDYPKA------------------IDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp H------HHHHHHHHHTTCHHHH------------------HHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred H------HHHHHHHHHhcCHHHH------------------HHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4 6778888899999988 899999999999999999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHHHHHHcCChHHHH-HHHHHHH
Q 002100 703 LARNYSTSEHEKLVYEGWILYDTGHREEAL-AKAEESI 739 (967)
Q Consensus 703 ~al~~~p~~~~a~~~lg~~~~~~g~~~eA~-~~~~~al 739 (967)
++++.+|++..++..++.++...++.+++. ..+.+.+
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999888888777 4444444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.23 E-value=9.1e-11 Score=126.92 Aligned_cols=159 Identities=11% Similarity=-0.021 Sum_probs=129.9
Q ss_pred ChHHHHHHHHHhHhhCCCCch------hHHHHHHHHHhcCcHHHHHHHHHHHhccCC---C----hhHHHHHHHHHHHhc
Q 002100 534 SGKEKMMDLNTATELDPTLSY------PYKYRAILLVEENKLAAAITEINRIIGFKV---S----PDCLELRAWISIALE 600 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~----~~~~~~la~~~~~~g 600 (967)
++++|+..++++++..+..+. .+..+|.++...+++++|+..|++++...+ + ..++..+|.+|..+|
T Consensus 90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 169 (293)
T 3u3w_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC
Confidence 559999999999998876654 334588999999999999999999998654 2 347999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHH
Q 002100 601 DYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLL 680 (967)
Q Consensus 601 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~ 680 (967)
++++|+..|+++++.....+. ..+....+
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~---------------------------------------------------~~~~~~~~ 198 (293)
T 3u3w_A 170 YLKKGIDLFEQILKQLEALHD---------------------------------------------------NEEFDVKV 198 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSSC---------------------------------------------------CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccc---------------------------------------------------chhHHHHH
Confidence 999999999999864211000 01223457
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCch------hHHHHHHHHHHHHcCC-hHHHHHHHHHHHhccc
Q 002100 681 RFRQSLLLLRLNSQKAAMRSLRLARNYSTSE------HEKLVYEGWILYDTGH-REEALAKAEESISIQR 743 (967)
Q Consensus 681 ~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~------~~a~~~lg~~~~~~g~-~~eA~~~~~~al~~~p 743 (967)
++++|.+|..+|++++|+..++++++..+.. +.+++.+|.++..+|+ +++|+..|++|+.+..
T Consensus 199 ~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999876443 7889999999999995 6999999999997654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-10 Score=117.43 Aligned_cols=169 Identities=15% Similarity=0.095 Sum_probs=127.8
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHH
Q 002100 688 LLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAY 767 (967)
Q Consensus 688 ~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~ 767 (967)
++..|++++|.+.++......+....++..+|.++...|++++|+..+++++.+.....
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------- 60 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--------------------- 60 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC---------------------
Confidence 35679999999966666554447788999999999999999999999999997543111
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc------Cc---HHHHHHHHHHHHHhCCHHHHH
Q 002100 768 VIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI------KH---TRAHQGLARVYHLKNQRKAAY 838 (967)
Q Consensus 768 a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~------~~---~~a~~~la~~~~~~g~~~~A~ 838 (967)
..+....++.++|.+|...|++++|+.+|+++++. ++ ..++.++|.++..+|++++|+
T Consensus 61 -------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 127 (203)
T 3gw4_A 61 -------------DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGAR 127 (203)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred -------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 11233478999999999999999999999999984 32 127889999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 839 DEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 839 ~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
..++++++..+..... .....++..+|.++...|++++|+..+++++++...
T Consensus 128 ~~~~~al~~~~~~~~~------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 128 QEYEKSLVYAQQADDQ------------------------VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHTTCH------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccch------------------------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 9999998764421000 011344678899999999999999999998876443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-11 Score=143.46 Aligned_cols=142 Identities=14% Similarity=0.108 Sum_probs=130.2
Q ss_pred hHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C---------------hhHHHHHHHHHHH
Q 002100 535 GKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S---------------PDCLELRAWISIA 598 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---------------~~~~~~la~~~~~ 598 (967)
+++|+..|+++++.+|+.+.++..+|..++..|+|++|+..|++++.++| + ..++.++|.+|..
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 329 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888999999999999999999999999999999999999999999 5 5899999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh
Q 002100 599 LEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS 678 (967)
Q Consensus 599 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~ 678 (967)
+|+|++|+..|+++++++|++..++ +.++.++..+++|++| +..|.++++++|.+.
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~~~a~------~~~g~a~~~~g~~~~A------------------~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSANEKGL------YRRGEAQLLMNEFESA------------------KGDFEKVLEVNPQNK 385 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHH------HHHHHHHHHTTCHHHH------------------HHHHHHHHTTC----
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHH------HHHHHHHHHccCHHHH------------------HHHHHHHHHhCCCCH
Confidence 9999999999999999999999998 8889999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRS 700 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~ 700 (967)
.++..++.++..++++++|.+.
T Consensus 386 ~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 386 AARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988864
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-10 Score=112.18 Aligned_cols=131 Identities=15% Similarity=0.128 Sum_probs=107.4
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhh
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNL 631 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 631 (967)
+..++.+|.+++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|++..++ ..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------~~ 86 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY------YR 86 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH------HH
Confidence 35677888888888888888888888888888 788888888888888888888888888888888888777 67
Q ss_pred HhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHH--HHHHHHHHhcCHHHHHHHHHHHHhc
Q 002100 632 VETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRF--RQSLLLLRLNSQKAAMRSLRLARNY 707 (967)
Q Consensus 632 ~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~--~~g~~~~~~g~~~~A~~~l~~al~~ 707 (967)
++.++...+++++| +..+.++++.+|.+...+. .++..+...|++++|+..++++...
T Consensus 87 ~a~~~~~~~~~~~A------------------~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 87 RAASNMALGKFRAA------------------LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHTTCHHHH------------------HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 78888888888888 8888888888888877774 4444577889999999988876543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.1e-11 Score=115.53 Aligned_cols=114 Identities=14% Similarity=0.089 Sum_probs=80.5
Q ss_pred CCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhh
Q 002100 550 PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHG 628 (967)
Q Consensus 550 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 628 (967)
+..+..++.+|.+++..|+|++|+..|++++.++| ++.++..+|.+|..+|++++|+..|+++++++|++..++
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----- 82 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAW----- 82 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH-----
Confidence 44456677777777777777777777777777777 677777777777777777777777777777777777666
Q ss_pred hhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHH
Q 002100 629 DNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLL 687 (967)
Q Consensus 629 ~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~ 687 (967)
+.++.++...+++++| +..|.++++.+|++...++.++..
T Consensus 83 -~~lg~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 83 -SRLGLARFDMADYKGA------------------KEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp -HHHHHHHHHTTCHHHH------------------HHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred -HHHHHHHHHccCHHHH------------------HHHHHHHHHhCCCchHHHHHHHHH
Confidence 6667777777777777 677777777777766655554444
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-11 Score=123.45 Aligned_cols=139 Identities=14% Similarity=0.108 Sum_probs=114.8
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-Ch----------------hHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SP----------------DCLELRAWISIA 598 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~----------------~~~~~la~~~~~ 598 (967)
+++.+.+....+..+..+..+..+|..++..|+|++|+..|++++...| ++ .++..+|.++..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 100 (198)
T 2fbn_A 21 GAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 100 (198)
T ss_dssp -CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555566677788889999999999999999999998888 55 788889999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh
Q 002100 599 LEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS 678 (967)
Q Consensus 599 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~ 678 (967)
+|++++|+..++++++++|++..++ +.++.++...+++++| +..+.++++.+|.+.
T Consensus 101 ~~~~~~A~~~~~~al~~~p~~~~~~------~~lg~~~~~~~~~~~A------------------~~~~~~al~~~p~~~ 156 (198)
T 2fbn_A 101 NKDYPKAIDHASKVLKIDKNNVKAL------YKLGVANMYFGFLEEA------------------KENLYKAASLNPNNL 156 (198)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHH------HHHHHHHHHHTCHHHH------------------HHHHHHHHHHSTTCH
T ss_pred hcCHHHHHHHHHHHHHhCcccHHHH------HHHHHHHHHcccHHHH------------------HHHHHHHHHHCCCcH
Confidence 9999999999999999999888888 7788889999999888 888999999999998
Q ss_pred HHHHHHHHHHHHhcCHHHHH
Q 002100 679 LLRFRQSLLLLRLNSQKAAM 698 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~ 698 (967)
.++..++.++...++..++.
T Consensus 157 ~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 157 DIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777766
|
| >4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.4e-11 Score=105.49 Aligned_cols=81 Identities=27% Similarity=0.385 Sum_probs=66.1
Q ss_pred EEEEE-cCeEEEehhHHHhccCHHHHHhhcC--CCCCCccceEEeccCCCCHHHHHHHHHhHc-----C---CCCC--CC
Q 002100 258 MSFCI-GNDEIRCVRYKIASLSRPFRTMLYG--GFIESRREKVNFSQNGISVEAMRAAEEFSR-----T---KMLD--SF 324 (967)
Q Consensus 258 v~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~--~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y-----t---~~~~--~~ 324 (967)
|+++. +|++|.+||.+ |++|++|++||.+ .+.|+....|.|++ |++.+++.+++|+| + +.++ ++
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~--V~~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFRE--IPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTT--SCHHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCC--CCHHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 56654 89999999999 9999999999987 78888889999976 99999999999999 5 6663 38
Q ss_pred CHHHHHHHHHHhchhCh
Q 002100 325 DPRLVLELLSFANRFCC 341 (967)
Q Consensus 325 ~~~~~~~ll~~A~~~~~ 341 (967)
+++++.+|+.+|++++|
T Consensus 81 ~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 APEIALELLMAANFLDC 97 (97)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhhhCC
Confidence 89999999999999875
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-10 Score=107.33 Aligned_cols=118 Identities=13% Similarity=0.055 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHH
Q 002100 586 PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLA 665 (967)
Q Consensus 586 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~ 665 (967)
..++..+|.++...|++++|+..|++++..+|++..++ ..++.++...+++++| +.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------~~la~~~~~~~~~~~A------------------~~ 71 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLY------SNRAACYTKLLEFQLA------------------LK 71 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHH------HHHHHHHTTTTCHHHH------------------HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH------HHHHHHHHHhccHHHH------------------HH
Confidence 34455555555555555555555555555555544444 4444445555555554 45
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCC
Q 002100 666 VVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGH 727 (967)
Q Consensus 666 ~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~ 727 (967)
.+.++++.+|.++..++.+|.++...|++++|+..|+++++.+|++..++..++.++..+|+
T Consensus 72 ~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 72 DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 55555555555555666677777777777777777777777777777777777777776653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-10 Score=107.96 Aligned_cols=121 Identities=15% Similarity=0.173 Sum_probs=101.3
Q ss_pred CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhh
Q 002100 549 DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLH 627 (967)
Q Consensus 549 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 627 (967)
.|....+++.+|.++...|++++|+..|++++..+| +..++..+|.++...|++++|+..++++++.+|++..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---- 87 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGY---- 87 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHH----
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHH----
Confidence 355667888888888888888888888888888888 788888888888888888888888888888888888777
Q ss_pred hhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcC
Q 002100 628 GDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNS 693 (967)
Q Consensus 628 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~ 693 (967)
..++.++...+++++| +..+.++++.+|.+..++..++.++..+|+
T Consensus 88 --~~la~~~~~~~~~~~A------------------~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 88 --TRKAAALEAMKDYTKA------------------MDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp --HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHhhHHHH------------------HHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 6778888888888888 888888888888888888888888877653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-10 Score=106.49 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHH
Q 002100 586 PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLA 665 (967)
Q Consensus 586 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~ 665 (967)
+..+..+|.++...|++++|+..|++++..+|++..++ ..++.++...+++++| +.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~~A------------------~~ 67 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYF------CNRAAAYSKLGNYAGA------------------VQ 67 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCHHHH------------------HH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHH------HHHHHHHHHhhchHHH------------------HH
Confidence 34445555555555555555555555555555544444 4444455555555555 45
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCCh
Q 002100 666 VVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHR 728 (967)
Q Consensus 666 ~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~ 728 (967)
.+.++++.+|.++..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 68 DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 555555555555556666677777777777777777777777777777777777777776664
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=108.31 Aligned_cols=123 Identities=19% Similarity=0.219 Sum_probs=100.7
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhh
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQL 626 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 626 (967)
.+|.+...++.+|..+...|++++|+..|++++...| ++.++..+|.++...|++++|+..+++++..+|++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--- 83 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY--- 83 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH---
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH---
Confidence 3455667788888888888888888888888888888 788888888888888888888888888888888887777
Q ss_pred hhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 002100 627 HGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQ 694 (967)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~ 694 (967)
..++.++...+++++| +..+.++++.+|.++.++..++.++...|++
T Consensus 84 ---~~~~~~~~~~~~~~~A------------------~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 84 ---GRMGLALSSLNKHVEA------------------VAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---HHHHHHHHHTTCHHHH------------------HHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHhCCHHHH------------------HHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 6778888888888888 7888888888888888888888888877764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-10 Score=112.15 Aligned_cols=115 Identities=15% Similarity=0.095 Sum_probs=103.5
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchH
Q 002100 585 SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSL 664 (967)
Q Consensus 585 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al 664 (967)
+...++.+|.++...|+|++|+..|+++++++|++..++ ..++.++...++|++| +
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~l~~~~~~~g~~~~A------------------~ 65 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYL------SNRAAAYSASGQHEKA------------------A 65 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH------HHHHHHHHHTTCHHHH------------------H
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHH------HHHHHHHHHccCHHHH------------------H
Confidence 577899999999999999999999999999999998888 7888999999999999 8
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 002100 665 AVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILY 723 (967)
Q Consensus 665 ~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~ 723 (967)
..+.++++.+|.++.+++.+|.++..+|++++|+..|+++++++|++..+++..+....
T Consensus 66 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 66 EDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887777665443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-10 Score=111.47 Aligned_cols=102 Identities=14% Similarity=0.051 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-------hhH-----HHHHHHHHHHHcCChHHHHHHHHHHHhc----
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS-------EHE-----KLVYEGWILYDTGHREEALAKAEESISI---- 741 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~-------~~~-----a~~~lg~~~~~~g~~~eA~~~~~~al~~---- 741 (967)
...+..+|..+...|+|++|+..|+++++.+|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 356788999999999999999999999999999 443 9999999999999999999999999998
Q ss_pred ---ccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHH----HHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 742 ---QRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQAL----NNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 742 ---~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~----~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
+|++. .+| +++|.++..+|++++|+.+|+++++
T Consensus 91 ~e~~pd~~----------------------------------------~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEG----------------------------------------KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHH----------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchH----------------------------------------HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88665 666 8889998888888888888888888
Q ss_pred cCcHH
Q 002100 815 IKHTR 819 (967)
Q Consensus 815 ~~~~~ 819 (967)
++|.+
T Consensus 131 l~p~d 135 (159)
T 2hr2_A 131 MIEER 135 (159)
T ss_dssp HHHHC
T ss_pred cCCCc
Confidence 66543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.8e-10 Score=129.07 Aligned_cols=211 Identities=9% Similarity=-0.022 Sum_probs=163.6
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-Ch-----------------hHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SP-----------------DCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
|.+....|..+...|+|++|++.|.++++..| .. .++..+|.+|...|++++|++.+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566778888899999999999999998877 21 3588999999999999999999999998
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc------CCCChHHHHHHHHHH
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN------DPGKSLLRFRQSLLL 688 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~------~p~~~~~~~~~g~~~ 688 (967)
..+..............++.++...+++++| +..+.+++.. .+....++..+|.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a------------------~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 145 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQ------------------IFVCEKSIEFAKREKRVFLKHSLSIKLATLH 145 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHH------------------HHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHH------------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 8666544432222224556666666777777 6666665543 233456788999999
Q ss_pred HHhcCHHHHHHHHHHHHhc------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCC
Q 002100 689 LRLNSQKAAMRSLRLARNY------STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNP 762 (967)
Q Consensus 689 ~~~g~~~~A~~~l~~al~~------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~ 762 (967)
...|+|.+|+..+++++.. .+...+++..+|.++...|++++|...+++++.+.+...
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---------------- 209 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY---------------- 209 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----------------
T ss_pred HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC----------------
Confidence 9999999999999998765 345578899999999999999999999999997665211
Q ss_pred CchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 763 ESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 763 ~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
......+..+..+|.++...++|++|..+|.++++
T Consensus 210 -----------------~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 210 -----------------CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred -----------------CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 00112346788899999999999999999999987
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.4e-10 Score=129.49 Aligned_cols=210 Identities=11% Similarity=0.003 Sum_probs=167.7
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchh-----------------HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEH-----------------EKLVYEGWILYDTGHREEALAKAEESIS 740 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~-----------------~a~~~lg~~~~~~g~~~eA~~~~~~al~ 740 (967)
|......|.-+...|+|++|++.|.++++..|... .++..+|.+|...|++++|+..+++++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44566778889999999999999999999887643 3588999999999999999999999987
Q ss_pred cccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC----
Q 002100 741 IQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK---- 816 (967)
Q Consensus 741 ~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~---- 816 (967)
..+... .......+...+|.++...|++++|+.++++++...
T Consensus 84 ~~~~~~----------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 129 (434)
T 4b4t_Q 84 YMMQFA----------------------------------KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK 129 (434)
T ss_dssp HHHTSC----------------------------------HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHcc----------------------------------chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC
Confidence 665322 000111456778999999999999999999998721
Q ss_pred ----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 002100 817 ----HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVL 892 (967)
Q Consensus 817 ----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~ 892 (967)
...++..+|.+|...|++++|...+++++..... ..-.|....++..++.+|
T Consensus 130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~ 185 (434)
T 4b4t_Q 130 RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK------------------------LDDKPSLVDVHLLESKVY 185 (434)
T ss_dssp CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT------------------------SSCSTHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh------------------------cccchhHHHHHHHHHHHH
Confidence 2348889999999999999999999998875432 111234456788899999
Q ss_pred HhCCCHHHHHHHHHHHHhcCCC---h-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 002100 893 MDDHKEAEAIAELSRAIAFKPD---L-----QLLHLRAAFHDSMGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 893 ~~~g~~~eAi~~~~kal~~~p~---~-----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 945 (967)
...|++++|...+++++...+. + ..+...|.++...+++++|..+|.++++..
T Consensus 186 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 186 HKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 9999999999999999876432 1 266778999999999999999999998653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=108.86 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=83.5
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
+++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+ ..+++.+|.++..+|++++|+..|++
T Consensus 23 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 23 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444444444555556667788889999999999999999999999999998 45899999999999999999999999
Q ss_pred HHhcCCC-----chhHHHHHHHHHhhh
Q 002100 941 ALCLDPN-----HTDTLELYDKATERV 962 (967)
Q Consensus 941 al~~~P~-----~~~~l~l~~r~~~~~ 962 (967)
+++++|+ +..+...+.++..+.
T Consensus 103 a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 103 AYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 788888888877664
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-10 Score=106.38 Aligned_cols=99 Identities=10% Similarity=0.003 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcC
Q 002100 680 LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSS 759 (967)
Q Consensus 680 ~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~ 759 (967)
.++.+|..+.+.|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~------------- 85 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI------------- 85 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------------
Confidence 4678899999999999999999999999999999999999999999999999999999999999766
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH
Q 002100 760 LNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT 818 (967)
Q Consensus 760 ~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~ 818 (967)
.++.++|.+|...|++++|+..|+++++.+|.
T Consensus 86 ---------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 86 ---------------------------AVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ---------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 78899999999999999999999999886654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.9e-10 Score=112.07 Aligned_cols=144 Identities=18% Similarity=0.144 Sum_probs=119.8
Q ss_pred CC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHh------cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 674 DP-GKSLLRFRQSLLLLRLNSQKAAMRSLRLARN------YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 674 ~p-~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~------~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
+| ....++..+|.++...|++++|+..+++++. ..|....++..+|.++...|++++|+..+++++++.....
T Consensus 21 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 100 (203)
T 3gw4_A 21 HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100 (203)
T ss_dssp STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 44 6678899999999999999999999999998 5566678899999999999999999999999997633100
Q ss_pred HHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc----CcH----
Q 002100 747 AFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI----KHT---- 818 (967)
Q Consensus 747 ~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~----~~~---- 818 (967)
........++.++|.++...|++++|+.+|+++++. +..
T Consensus 101 ---------------------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 101 ---------------------------------EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------------------ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 000123468899999999999999999999999972 222
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
.++..+|.++..+|++++|+..++++++....
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 26789999999999999999999999987653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=113.58 Aligned_cols=114 Identities=18% Similarity=0.080 Sum_probs=92.7
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhh------------------CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATEL------------------DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV 584 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l------------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 584 (967)
|..+...+.| ++|+..|.+++++ +|.+..+|.++|.++..+|++++|+..+++++.++|
T Consensus 18 G~~~~~~~~~---~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 18 GNELFVQKDY---KEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHTTCH---HHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHcCCH---HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 4555555544 6666666666666 677889999999999999999999999999999999
Q ss_pred -ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCch-HHhhhhhhhhhHhhhHHHhhchhhH
Q 002100 585 -SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYM-MFYGQLHGDNLVETLQPLVQQWSQA 645 (967)
Q Consensus 585 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~~~~~~~~~~l~~~~~~~~~A 645 (967)
++.+++.+|.+|..+|++++|+..|+++++++|++. .+. ..+..+....+++.+.
T Consensus 95 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~------~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVA------REMKIVTERRAEKKAD 151 (162)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHH------HHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHH------HHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999998 444 3445555555444443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.9e-11 Score=130.68 Aligned_cols=157 Identities=8% Similarity=-0.067 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcC
Q 002100 454 WQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYC 533 (967)
Q Consensus 454 ~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~ 533 (967)
+..+..++.+|..++..|+|++|+.+|++++...|.... +...|+..++...+. ...+.++|.++..++.|
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~------~~~~~~~~~~~~~l~--~~~~~nla~~~~~~g~~- 246 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM------FQLYGKYQDMALAVK--NPCHLNIAACLIKLKRY- 246 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH------HTCCHHHHHHHHHHH--THHHHHHHHHHHTTTCC-
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh------hhhcccHHHHHHHHH--HHHHHHHHHHHHHcCCH-
Confidence 345677899999999999999999999999999886542 112233333333222 12456678888888877
Q ss_pred ChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHH-HHHhcCHHHHHHHHHH
Q 002100 534 SGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWI-SIALEDYDGALRDVRA 611 (967)
Q Consensus 534 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~-~~~~g~~~~A~~~~~~ 611 (967)
++|+..|+++++++|++..+|+++|.+|..+|++++|+..|++++.++| +..++..++.+ ....+..+++...|.+
T Consensus 247 --~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~ 324 (338)
T 2if4_A 247 --DEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKG 324 (338)
T ss_dssp --HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------
T ss_pred --HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 88999999988 4456778889999999
Q ss_pred HHHhCCCchH
Q 002100 612 LLTLDPSYMM 621 (967)
Q Consensus 612 al~l~p~~~~ 621 (967)
++...|++..
T Consensus 325 ~l~~~p~~~~ 334 (338)
T 2if4_A 325 IFKGKDEGGA 334 (338)
T ss_dssp ----------
T ss_pred hhCCCCCCCC
Confidence 9999998654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=106.65 Aligned_cols=96 Identities=17% Similarity=0.159 Sum_probs=83.8
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALED 601 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~ 601 (967)
|..+...+.+ ++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++| ++.++..+|.++...|+
T Consensus 24 g~~~~~~g~~---~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 24 GLSMLKLANL---AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHTTCH---HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 4555566655 9999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCchH
Q 002100 602 YDGALRDVRALLTLDPSYMM 621 (967)
Q Consensus 602 ~~~A~~~~~~al~l~p~~~~ 621 (967)
+++|+..|+++++++|++..
T Consensus 101 ~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999998653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-09 Score=101.95 Aligned_cols=117 Identities=9% Similarity=-0.034 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHH
Q 002100 820 AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEA 899 (967)
Q Consensus 820 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~ 899 (967)
+++.+|.+++..|++++|+..|+++++..|++ |....+++.+|.++...|+++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------------------~~~~~~~~~lg~~~~~~~~~~ 56 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG---------------------------VYTPNALYWLGESYYATRNFQ 56 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS---------------------------TTHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---------------------------cccHHHHHHHHHHHHHhccHH
Confidence 35667777777777777777777776665531 111268889999999999999
Q ss_pred HHHHHHHHHHhcCCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 002100 900 EAIAELSRAIAFKPDL----QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 900 eAi~~~~kal~~~p~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
+|+..|+++++..|+. .+++.+|.++..+|++++|+..|++++..+|+++.+.....++.....
T Consensus 57 ~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 57 LAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 9999999999999984 479999999999999999999999999999999998888887776544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.11 E-value=3.8e-10 Score=106.15 Aligned_cols=92 Identities=18% Similarity=0.125 Sum_probs=53.2
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhh
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQL 626 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 626 (967)
.+|.++..++.+|.+++..|++++|+..|++++..+| ++.++..+|.++..+|++++|+..++++++++|++..++
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--- 80 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH--- 80 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH---
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHH---
Confidence 3455556666666666666666666666666666666 566666666666666666666666666666655555444
Q ss_pred hhhhhHhhhHHHhhchhhH
Q 002100 627 HGDNLVETLQPLVQQWSQA 645 (967)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~A 645 (967)
+.++.++...+++++|
T Consensus 81 ---~~l~~~~~~~~~~~~A 96 (137)
T 3q49_B 81 ---FFLGQCQLEMESYDEA 96 (137)
T ss_dssp ---HHHHHHHHHTTCHHHH
T ss_pred ---HHHHHHHHHHhhHHHH
Confidence 3444444444444444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-09 Score=98.49 Aligned_cols=112 Identities=16% Similarity=0.135 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCH
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKE 898 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~ 898 (967)
..+..+|.++...|++++|+..|+++++. +|.++.++..+|.++...|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------------------~~~~~~~~~~~a~~~~~~~~~ 54 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL------------------------------DPHNHVLYSNRSAAYAKKGDY 54 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH------------------------------CCCcHHHHHHHHHHHHhhccH
Confidence 35666677777777776666666666554 445567778888888889999
Q ss_pred HHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 002100 899 AEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 899 ~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~ 960 (967)
++|+..++++++..|+ ..++..+|.++..+|++++|+..++++++.+|+++.+...+.++..
T Consensus 55 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 55 QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 9999999999998887 5588889999999999999999999999999999888888777754
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.10 E-value=3e-08 Score=115.07 Aligned_cols=211 Identities=12% Similarity=-0.016 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHH
Q 002100 695 KAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEE 774 (967)
Q Consensus 695 ~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~ 774 (967)
+.....|++++...|..+..|...+..+...|+.++|...|++++.. |....... +|.... ..+ .....+..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~-~y~~~~---e~~---~~~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL-YYGLVM---DEE---AVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH-HHHHHT---TCT---HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH-HHHhhc---chh---HHHHHHHH
Confidence 44566888888888888888888888888888888888888888888 75442211 111110 000 00000000
Q ss_pred HhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHH
Q 002100 775 ALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN-IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNAS 853 (967)
Q Consensus 775 ~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 853 (967)
.... ...+.+ .... ..+..+|...+......++.+.|...|.++ ...+....
T Consensus 268 ~~~~---------------------~~~~~~-----~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~ 320 (493)
T 2uy1_A 268 KYSM---------------------GEAESA-----EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPH 320 (493)
T ss_dssp HTC------------------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHH
T ss_pred HHHh---------------------hccchh-----hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChH
Confidence 0000 000000 0000 111235566666666666677777777777 32222344
Q ss_pred HHHHHHcc-----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 002100 854 AYEKRSEY-----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSM 928 (967)
Q Consensus 854 ~~~~~~~~-----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~ 928 (967)
.|...+.. ++.+.|...|+.+++..|+.+..+...+......|+.+.|...|+++.+ ....+.....+-...
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k---~~~lw~~~~~fE~~~ 397 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK---TSRMWDSMIEYEFMV 397 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC---BHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHC
Confidence 44444421 3577777777777777777776666667777777888888888888721 234555556666677
Q ss_pred CChHHHHHHHHHHHh
Q 002100 929 GDHLHTQRDCEAALC 943 (967)
Q Consensus 929 g~~~~A~~~~~~al~ 943 (967)
|+.+.+...+++++.
T Consensus 398 G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 398 GSMELFRELVDQKMD 412 (493)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888887887774
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-09 Score=100.11 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=98.3
Q ss_pred CCCC-chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhh
Q 002100 549 DPTL-SYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQL 626 (967)
Q Consensus 549 ~P~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 626 (967)
+|.. ..+++.+|.++...|++++|++.|++++...| +..++..+|.++...|++++|+..+++++..+|++...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--- 80 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW--- 80 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH---
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHH---
Confidence 4544 67788888888889999999999999888888 788888889999889999999999999888888887777
Q ss_pred hhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc
Q 002100 627 HGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLN 692 (967)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g 692 (967)
..++.++...+++++| +..+.++++.+|.++..+..++.++...|
T Consensus 81 ---~~la~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 81 ---YNLGNAYYKQGDYDEA------------------IEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp ---HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHhcCHHHH------------------HHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 6778888888888888 88888888888888888888877776543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.09 E-value=4.9e-11 Score=138.25 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchh--HHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhh
Q 002100 454 WQKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIY--SLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSL 531 (967)
Q Consensus 454 ~~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~--a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~ 531 (967)
++.+.+++.+|..++..|+|++|+.+|++|++++|.. ++..+| .++..+++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg---------------------------~~~~~~g~ 55 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRS---------------------------LAYLRTEC 55 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH---------------------------HHHHHTTC
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHH---------------------------HHHHHhcC
Confidence 3456678889999999999999999999999998854 344444 44555554
Q ss_pred cCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHH--HHHhcCHHHHHHH
Q 002100 532 YCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWI--SIALEDYDGALRD 608 (967)
Q Consensus 532 y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~--~~~~g~~~~A~~~ 608 (967)
| ++|+..|+++++++|+++.+++.+|.+|..+|++++|++.|+++++++| +..++..++.+ +..+|++++|++.
T Consensus 56 ~---~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~ 132 (477)
T 1wao_1 56 Y---GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 132 (477)
T ss_dssp H---HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC---
T ss_pred H---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4 9999999999999999999999999999999999999999999999999 88889889888 8899999999999
Q ss_pred HH-----------HHHHhCCCchHHh
Q 002100 609 VR-----------ALLTLDPSYMMFY 623 (967)
Q Consensus 609 ~~-----------~al~l~p~~~~~~ 623 (967)
++ +++.++|++...+
T Consensus 133 ~~~~~~~~~~~~~~al~~~~~~~~~~ 158 (477)
T 1wao_1 133 DEHKRSVVDSLDIESMTIEDEYSGPK 158 (477)
T ss_dssp ---CCSTTTCCTTSSCCCCTTCCSCC
T ss_pred ccccchhHhhhhhhhccccccccccc
Confidence 99 8888888765554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-09 Score=99.34 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHH
Q 002100 586 PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLA 665 (967)
Q Consensus 586 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~ 665 (967)
..+++.+|.++...|++++|+..|++++..+|++...+ ..++.++...+++++| +.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~la~~~~~~~~~~~A------------------~~ 64 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW------YNLGNAYYKQGDYDEA------------------IE 64 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTTCHHHH------------------HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH------HHHHHHHHHhCCHHHH------------------HH
Confidence 67899999999999999999999999999999988877 7778899999999999 89
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcC
Q 002100 666 VVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTG 726 (967)
Q Consensus 666 ~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g 726 (967)
.+.++++.+|.++..++.+|.++...|++++|+..++++++.+|+++.++..++.++...|
T Consensus 65 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 65 YYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999887654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.6e-10 Score=104.56 Aligned_cols=113 Identities=18% Similarity=0.127 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCC---chHHHHHHHHHHhC
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMR---TYPYRYRAAVLMDD 895 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~---~~~~~~la~~~~~~ 895 (967)
..+..+|..++..|++++|+..|+++++ .+|++ ..++..+|.++...
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~------------------------------~~~~~~~~~~~~~~~a~~~~~~ 78 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG------------------------------LDATPQDQAVLHRNRAACHLKL 78 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT------------------------------SCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------------------HcccchHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666555555 44444 67888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhh
Q 002100 896 HKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATER 961 (967)
Q Consensus 896 g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~ 961 (967)
|++++|+..++++++..|+ ..+++.+|.++..+|++++|+..|+++++++|++..+...+.++.++
T Consensus 79 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 79 EDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp TCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred ccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 9999999999999999998 56899999999999999999999999999999999999998888654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.9e-10 Score=99.70 Aligned_cols=104 Identities=13% Similarity=0.033 Sum_probs=94.7
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccc--hHHHHHH
Q 002100 674 DPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRS--FEAFFLK 751 (967)
Q Consensus 674 ~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~ 751 (967)
+|.++..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|+ ..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----- 76 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK----- 76 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH-----
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH-----
Confidence 68888899999999999999999999999999999999999999999999999999999999999998885 44
Q ss_pred HHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc-ccHHHHHHHHHHHhccCc
Q 002100 752 AYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC-EKLDLAADCYMNALNIKH 817 (967)
Q Consensus 752 ~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~-g~~~~A~~~~~~Al~~~~ 817 (967)
.++.++|.++... |++++|++++++++...+
T Consensus 77 -----------------------------------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 77 -----------------------------------DVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp -----------------------------------HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred -----------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 7889999999999 999999999999988544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-09 Score=104.96 Aligned_cols=139 Identities=18% Similarity=0.102 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchh------HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEH------EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLK 751 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 751 (967)
..++..+|.++...|++++|+..++++++..+... .++..+|.++...|++++|+..+++++++.+...
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----- 83 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK----- 83 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-----
Confidence 45778899999999999999999999998866543 4788999999999999999999999997765321
Q ss_pred HHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc----Cc----HHHHHH
Q 002100 752 AYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI----KH----TRAHQG 823 (967)
Q Consensus 752 ~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~----~~----~~a~~~ 823 (967)
+.+....++.++|.++...|++++|+.+|+++++. +. ..++..
T Consensus 84 -----------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 134 (164)
T 3ro3_A 84 -----------------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 134 (164)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHH
Confidence 11122468899999999999999999999999973 11 237889
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHccC
Q 002100 824 LARVYHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 824 la~~~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
+|.++..+|++++|++.++++++....
T Consensus 135 la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 135 LGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987664
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.8e-10 Score=105.63 Aligned_cols=98 Identities=10% Similarity=-0.086 Sum_probs=87.6
Q ss_pred CChHHHHHHHHHhhcc---CCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHH
Q 002100 862 CDRDMAKSDLSMATQL---DPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRD 937 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l---~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~ 937 (967)
|++++|+..|++++++ +|+++.++..+|.+|...|++++|+..|+++++.+|+ ..+++.+|.++..+|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 6788999999999999 6889999999999999999999999999999999999 56999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHH
Q 002100 938 CEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 938 ~~~al~~~P~~~~~l~l~~r~~ 959 (967)
++++++..|+++++......+.
T Consensus 84 ~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 84 LLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHH
Confidence 9999999999998876555444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-10 Score=108.37 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=74.2
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCH----------HHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcC-
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKE----------AEAIAELSRAIAFKPD-LQLLHLRAAFHDSMG- 929 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~----------~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g- 929 (967)
+.+++|+..++++++++|+++.+|.++|.++...+++ ++|+..|+++++++|+ .++++++|.+|..+|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 3466777777777777777777777777777777654 5888888888888887 458888888887774
Q ss_pred ----------ChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 002100 930 ----------DHLHTQRDCEAALCLDPNHTDTLELYDKAT 959 (967)
Q Consensus 930 ----------~~~~A~~~~~~al~~~P~~~~~l~l~~r~~ 959 (967)
++++|+..|++|++++|++......+..+.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 788888888888888888876666555444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-10 Score=133.91 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=109.0
Q ss_pred ccCcchhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHH
Q 002100 518 DYTPVGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWIS 596 (967)
Q Consensus 518 ~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~ 596 (967)
.+...|..+...++| ++|+..|+++++++|++..++..+|.++..+|++++|++.|+++++++| ++.+++.+|.+|
T Consensus 8 ~~~~lg~~~~~~g~~---~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 8 ELKTQANDYFKAKDY---ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp TSSSSSSSTTTTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCH---HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 455667778878866 9999999999999999999999999999999999999999999999999 899999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhh--HHHhhchhhH
Q 002100 597 IALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETL--QPLVQQWSQA 645 (967)
Q Consensus 597 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l--~~~~~~~~~A 645 (967)
..+|++++|+..|+++++++|++..++ ..++.+ +...+++++|
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~------~~l~~~~~~~~~g~~~~A 129 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAK------MKYQECNKIVKQKAFERA 129 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHH------HHHHHHHHHHHHHHHCCC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888 555666 7777888888
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.9e-09 Score=96.42 Aligned_cols=110 Identities=15% Similarity=0.067 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHH
Q 002100 588 CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVV 667 (967)
Q Consensus 588 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~ 667 (967)
.+..+|.++...|++++|+..|++++..+|++..++ ..++.++...+++++| +..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~~A------------------~~~~ 61 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLY------SNRSAAYAKKGDYQKA------------------YEDG 61 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHHTCHHHH------------------HHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH------HHHHHHHHhhccHHHH------------------HHHH
Confidence 344444444444444444444444444444444443 3334444444444444 4444
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 002100 668 HHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWI 721 (967)
Q Consensus 668 ~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~ 721 (967)
.++++.+|.++..++.+|.++...|++++|+..++++++.+|+++.++..++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 444444444455555556666666666666666666666666666666555554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=5.2e-10 Score=106.26 Aligned_cols=88 Identities=11% Similarity=0.102 Sum_probs=83.5
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcH----------HHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc----
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKL----------AAAITEINRIIGFKV-SPDCLELRAWISIALE---- 600 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g---- 600 (967)
++|+..++++++++|+++.+|+++|.++...+++ ++|+..|+++++++| +.++++.+|.+|..+|
T Consensus 19 eeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P 98 (158)
T 1zu2_A 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTP 98 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCc
Confidence 9999999999999999999999999999999875 599999999999999 8999999999999885
Q ss_pred -------CHHHHHHHHHHHHHhCCCchHHh
Q 002100 601 -------DYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 601 -------~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
++++|+..|+++++++|++..+.
T Consensus 99 ~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~ 128 (158)
T 1zu2_A 99 DETEAKHNFDLATQFFQQAVDEQPDNTHYL 128 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred chhhhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 89999999999999999987666
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-10 Score=127.89 Aligned_cols=135 Identities=14% Similarity=0.116 Sum_probs=62.0
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchh-----------------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 676 GKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEH-----------------EKLVYEGWILYDTGHREEALAKAEES 738 (967)
Q Consensus 676 ~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~-----------------~a~~~lg~~~~~~g~~~eA~~~~~~a 738 (967)
.....++.+|..+...|++++|+..|++++...|++. .+++++|.++..+|++++|+..|+++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455677888888888888888888888888888765 24555555555555555555555555
Q ss_pred HhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH
Q 002100 739 ISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT 818 (967)
Q Consensus 739 l~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~ 818 (967)
++++|++. .+++++|.+|..+|++++|+.+|++++++++.
T Consensus 257 l~~~p~~~----------------------------------------~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 257 LTEEEKNP----------------------------------------KALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp HHHCTTCH----------------------------------------HHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HHhCCCCH----------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 55555333 45555555555555555555555555543332
Q ss_pred --HHHHHHHHH-HHHhCCHHHHHHHHHHHHHHccC
Q 002100 819 --RAHQGLARV-YHLKNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 819 --~a~~~la~~-~~~~g~~~~A~~~~~~al~~~p~ 850 (967)
.++..++.+ ....++.+++...|.+++...|+
T Consensus 297 ~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 297 DKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp -----------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 244444444 22333444444445544444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-09 Score=103.25 Aligned_cols=118 Identities=13% Similarity=0.101 Sum_probs=104.5
Q ss_pred hhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHH
Q 002100 547 ELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S---PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMF 622 (967)
Q Consensus 547 ~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 622 (967)
..+|.....++.+|..++..|++++|+..|++++..+| + ..++..+|.+|...|++++|+..+++++..+|++..+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 45677888999999999999999999999999999999 4 7899999999999999999999999999999999888
Q ss_pred hhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHH
Q 002100 623 YGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLL 688 (967)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~ 688 (967)
+ +.++.++...+++++| +..+.++++.+|.+..++..++.+.
T Consensus 102 ~------~~~a~~~~~~~~~~~A------------------~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 102 L------YRRSQALEKLGRLDQA------------------VLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp H------HHHHHHHHHHTCHHHH------------------HHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred H------HHHHHHHHHcCCHHHH------------------HHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 8 7788999999999999 8899999999999888777666553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=98.23 Aligned_cols=107 Identities=8% Similarity=0.051 Sum_probs=97.1
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--chHHhh
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPS--YMMFYG 624 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~ 624 (967)
++|++..+++.+|.++...|++++|+..|++++..+| +..++..+|.++...|++++|+..++++++.+|+ +...+
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~- 79 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVW- 79 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHH-
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHH-
Confidence 4688899999999999999999999999999999999 8899999999999999999999999999999999 88877
Q ss_pred hhhhhhhHhhhHHHh-hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCCh
Q 002100 625 QLHGDNLVETLQPLV-QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS 678 (967)
Q Consensus 625 ~~~~~~~~~~l~~~~-~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~ 678 (967)
..++.++... +++++| +..+.+++...|..+
T Consensus 80 -----~~l~~~~~~~~~~~~~A------------------~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 80 -----AAKADALRYIEGKEVEA------------------EIAEARAKLEHHHHH 111 (112)
T ss_dssp -----HHHHHHHTTCSSCSHHH------------------HHHHHHHGGGCCCCC
T ss_pred -----HHHHHHHHHHhCCHHHH------------------HHHHHHHhhcccCCC
Confidence 7788999999 999999 889999998888753
|
| >1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D | Back alignment and structure |
|---|
Probab=99.00 E-value=9.1e-10 Score=103.58 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=83.8
Q ss_pred EEEEE-cCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCC----------------
Q 002100 258 MSFCI-GNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKM---------------- 320 (967)
Q Consensus 258 v~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~---------------- 320 (967)
|+|+. +|+.|.+||.+ |.+|++|++||.+.- ...|.|+. |+..+++.|++|+|+..
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl~~--V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 76 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLPN--VNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 76 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECTT--CCHHHHHHHHHHHHHHTTCC-------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceecCC--cCHHHHHHHHHHHHHhccCCCccccccccccch
Confidence 77776 89999999998 899999999997531 45799976 99999999999999866
Q ss_pred ----------CCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHH
Q 002100 321 ----------LDSFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVM 364 (967)
Q Consensus 321 ----------~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~ 364 (967)
+ .++.+++.+|+.+|+++++..|.+.|.++++..+. -.+...
T Consensus 77 ~~i~~wD~~F~-~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ik-gkt~ee 128 (141)
T 1fs1_B 77 DDIPVWDQEFL-KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIK-GKTPEE 128 (141)
T ss_dssp ----HHHHHHT-CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-TCCHHH
T ss_pred hhhhHHHHHHH-hCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-CCCHHH
Confidence 4 57888999999999999999999999999999887 444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-09 Score=100.48 Aligned_cols=122 Identities=13% Similarity=0.170 Sum_probs=100.8
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhh
Q 002100 677 KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALA 756 (967)
Q Consensus 677 ~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la 756 (967)
.+..++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------- 72 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR---------- 72 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST----------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc----------
Confidence 4567889999999999999999999999999999999999999999999999999999999998887431
Q ss_pred hcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc-HHHHHHHHHHHHHh
Q 002100 757 DSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH-TRAHQGLARVYHLK 831 (967)
Q Consensus 757 ~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~-~~a~~~la~~~~~~ 831 (967)
...+....+++++|.++...|++++|+.+|+++++..+ ......++.+....
T Consensus 73 -----------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 73 -----------------------EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp -----------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred -----------------------hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 00001136888999999999999999999999988544 34666666665544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.7e-10 Score=106.18 Aligned_cols=141 Identities=16% Similarity=0.065 Sum_probs=115.9
Q ss_pred chHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHH
Q 002100 784 RKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT--------RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAY 855 (967)
Q Consensus 784 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~--------~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 855 (967)
..+.++..+|.++...|++++|+.+|+++++..+. .++..+|.++..+|++++|+..++++++..+...
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--- 83 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK--- 83 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---
Confidence 34578999999999999999999999999983221 3788999999999999999999999998765311
Q ss_pred HHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHc
Q 002100 856 EKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-------LQLLHLRAAFHDSM 928 (967)
Q Consensus 856 ~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-------~~~~~~~a~~~~~~ 928 (967)
..+....++.++|.++...|++++|+..++++++..+. ..++..+|.++..+
T Consensus 84 ---------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 142 (164)
T 3ro3_A 84 ---------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 142 (164)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc
Confidence 00112456788999999999999999999999976322 23788899999999
Q ss_pred CChHHHHHHHHHHHhcCCCc
Q 002100 929 GDHLHTQRDCEAALCLDPNH 948 (967)
Q Consensus 929 g~~~~A~~~~~~al~~~P~~ 948 (967)
|++++|+..+++++++....
T Consensus 143 g~~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 143 GNHDQAMHFAEKHLEISREV 162 (164)
T ss_dssp TCHHHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999876543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-09 Score=100.45 Aligned_cols=117 Identities=15% Similarity=0.038 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCH
Q 002100 819 RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKE 898 (967)
Q Consensus 819 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~ 898 (967)
.++..+|.++...|++++|+..|+++++.. |.++.++..+|.++...|++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------------------~~~~~~~~~la~~~~~~~~~ 54 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD------------------------------PTNMTYITNQAAVYFEKGDY 54 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------------------------------CccHHHHHHHHHHHHHhccH
Confidence 356777777777777777777776666654 45566778888899999999
Q ss_pred HHHHHHHHHHHhcCCC--------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhhhcC
Q 002100 899 AEAIAELSRAIAFKPD--------LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNEQQ 966 (967)
Q Consensus 899 ~eAi~~~~kal~~~p~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~~~~ 966 (967)
++|+..|+++++..|+ ..+++.+|.++..+|++++|+..|+++++++| ++.+...+.++....++.+
T Consensus 55 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 129 (131)
T 1elr_A 55 NKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE 129 (131)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence 9999999999888664 34788899999999999999999999999988 5778888888877766543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.1e-09 Score=97.15 Aligned_cols=66 Identities=14% Similarity=0.017 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-Ch---hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFKV-SP---DCLELRAWISIALEDYDGALRDVRALLTLDPSY 619 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~---~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 619 (967)
.+++.+|.+++..|++++|+..|++++..+| ++ .+++.+|.++...|++++|+..|++++..+|++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 3456666666666666666666666666666 44 466666666666666666666666666666654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.98 E-value=5e-10 Score=102.61 Aligned_cols=90 Identities=8% Similarity=-0.059 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHhHhh---CCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHH
Q 002100 534 SGKEKMMDLNTATEL---DPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDV 609 (967)
Q Consensus 534 ~~~~A~~~~~~al~l---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~ 609 (967)
++++|+..|++++++ +|++..+++.+|.++...|++++|+..|+++++.+| ++.+++.+|.++..+|++++|+..+
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 84 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELL 84 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 348999999999999 699999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHhCCCchHHh
Q 002100 610 RALLTLDPSYMMFY 623 (967)
Q Consensus 610 ~~al~l~p~~~~~~ 623 (967)
++++...|+++...
T Consensus 85 ~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 85 LKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHCCCHHHH
T ss_pred HHHHHhCCCcHHHH
Confidence 99999999988766
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.98 E-value=4.8e-07 Score=104.87 Aligned_cols=208 Identities=9% Similarity=-0.026 Sum_probs=146.3
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 664 LAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 664 l~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
...|++++...|..+.+|+..+..+.+.|+.+.|...|++++.. |.+...+...+... +.++. +++..+..-
T Consensus 199 ~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~----e~~~~---~~~l~~~~~ 270 (493)
T 2uy1_A 199 HFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM----DEEAV---YGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT----TCTHH---HHHHHHHTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc----chhHH---HHHHHHHHH
Confidence 57899999999999999999999999999999999999999999 99876665444331 11111 222211100
Q ss_pred chHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC-cHHHHH
Q 002100 744 SFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK-HTRAHQ 822 (967)
Q Consensus 744 ~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~-~~~a~~ 822 (967)
+... ... . ..........|...+......++.+.|...|++|..+. ....+.
T Consensus 271 -----------~~~~--~~~---~-----------~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i 323 (493)
T 2uy1_A 271 -----------MGEA--ESA---E-----------KVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFI 323 (493)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHH
T ss_pred -----------hhcc--chh---h-----------hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHH
Confidence 0000 000 0 00001122567777777778889999999999992232 223666
Q ss_pred HHHHHHHHhC-CHHHHHHHHHHHHHHccCCHHHHHHHHc----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC
Q 002100 823 GLARVYHLKN-QRKAAYDEMTKLIEKARNNASAYEKRSE----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK 897 (967)
Q Consensus 823 ~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~ 897 (967)
..|.+.+..+ +.+.|...|+.+++..|+.+..+..... .++.+.|...|+++. .....|......-...|+
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 6677766666 6999999999999999998877665553 388999999999983 355666666666667799
Q ss_pred HHHHHHHHHHHHh
Q 002100 898 EAEAIAELSRAIA 910 (967)
Q Consensus 898 ~~eAi~~~~kal~ 910 (967)
.+.+.+.++++++
T Consensus 400 ~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 400 MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998885
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.4e-09 Score=118.39 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhc
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIG 581 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~ 581 (967)
+..+|..++..|+|++|+..|+++++
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~ 251 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLR 251 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44555555555555555555555554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.93 E-value=4e-09 Score=117.75 Aligned_cols=123 Identities=12% Similarity=0.129 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHH----------------hCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHH
Q 002100 587 DCLELRAWISIALEDYDGALRDVRALLT----------------LDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQ 650 (967)
Q Consensus 587 ~~~~~la~~~~~~g~~~~A~~~~~~al~----------------l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~ 650 (967)
..+..+|..+...|+|++|+..|+++++ ++|.+..++ .+++.++...++|++|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~------~nla~~~~~~g~~~~A----- 292 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCV------LNIGACKLKMSDWQGA----- 292 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHH------HHHHHHHHHTTCHHHH-----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHH------HHHHHHHHhccCHHHH-----
Confidence 4578899999999999999999999998 444444444 5566666677777666
Q ss_pred HHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHH
Q 002100 651 LYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREE 730 (967)
Q Consensus 651 l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~e 730 (967)
+..+.++++.+|.++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...+++++
T Consensus 293 -------------~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 293 -------------VDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp -------------HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777777777777777777777777777777777777777666666665
Q ss_pred HHH
Q 002100 731 ALA 733 (967)
Q Consensus 731 A~~ 733 (967)
+.+
T Consensus 360 a~k 362 (370)
T 1ihg_A 360 KEK 362 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=5.8e-10 Score=107.39 Aligned_cols=107 Identities=13% Similarity=0.145 Sum_probs=57.8
Q ss_pred cEEEEE-cCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCC-------------
Q 002100 257 DMSFCI-GNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLD------------- 322 (967)
Q Consensus 257 Dv~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~------------- 322 (967)
-|+|+. +|+.|.+||.+ |.+|++|++||.+.. ....|.|+. |+..+++.|++|+|+..-.
T Consensus 5 ~v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~~--V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~ 78 (160)
T 2p1m_A 5 KIVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLPN--VTSKILAKVIEYCKRHVEAAASKAEAVEGAAT 78 (160)
T ss_dssp ---CCC---------CHH-HHTCTTTC---------------CCTT--SCHHHHHHHHHC--------------------
T ss_pred EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCCc--CcHHHHHHHHHHHHHcccCCCccccccccccc
Confidence 367764 89999999998 899999999998653 234788865 9999999999999987621
Q ss_pred -------------CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCC--ChhhHHHHHHHH
Q 002100 323 -------------SFDPRLVLELLSFANRFCCEELKSACDSYLASMVS--DIEDAVMLIEYG 369 (967)
Q Consensus 323 -------------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~--~~~n~~~~~~~A 369 (967)
.++.+++.+|+.+|++++|..|.++|.++++..+. +++.+..++.+.
T Consensus 79 ~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~ 140 (160)
T 2p1m_A 79 SDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIK 140 (160)
T ss_dssp ----------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCC
T ss_pred ccchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCC
Confidence 46778899999999999999999999999999984 256655555443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-08 Score=92.53 Aligned_cols=85 Identities=12% Similarity=0.090 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 865 DMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALC 943 (967)
Q Consensus 865 ~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 943 (967)
+.|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+ ..+++.+|.++..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999998 46899999999999999999999999999
Q ss_pred cCCCch
Q 002100 944 LDPNHT 949 (967)
Q Consensus 944 ~~P~~~ 949 (967)
++|++.
T Consensus 82 ~~~~~~ 87 (115)
T 2kat_A 82 AAQSRG 87 (115)
T ss_dssp HHHHHT
T ss_pred hccccc
Confidence 998643
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-08 Score=92.34 Aligned_cols=87 Identities=11% Similarity=-0.036 Sum_probs=81.9
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| +..+++.+|.+|..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred hCCCchHH
Q 002100 615 LDPSYMMF 622 (967)
Q Consensus 615 l~p~~~~~ 622 (967)
++|+....
T Consensus 82 ~~~~~~~~ 89 (115)
T 2kat_A 82 AAQSRGDQ 89 (115)
T ss_dssp HHHHHTCH
T ss_pred hccccccH
Confidence 98865433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.69 E-value=1e-08 Score=92.12 Aligned_cols=100 Identities=8% Similarity=-0.005 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhh
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALAD 757 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~ 757 (967)
...++.+|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..++++++++|++...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------- 74 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV--------- 74 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHH---------
Confidence 56788999999999999999999999999999999999999999999999999999999999999965200
Q ss_pred cCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHH
Q 002100 758 SSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMN 811 (967)
Q Consensus 758 ~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 811 (967)
.....++..+|.++...|++++|+..|++
T Consensus 75 -------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 75 -------------------------AIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 00126788888888888888777666543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.5e-07 Score=108.15 Aligned_cols=134 Identities=11% Similarity=-0.075 Sum_probs=110.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHh
Q 002100 684 QSLLLLRLNSQKAAMRSLRLARNY--------STSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYAL 755 (967)
Q Consensus 684 ~g~~~~~~g~~~~A~~~l~~al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~l 755 (967)
.+..+..+|+|++|+..+++++++ +|.....+.++|.+|..+|++++|+.++++++++...
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~----------- 383 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMK----------- 383 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-----------
Confidence 344566789999999999999875 3444567899999999999999999999999965431
Q ss_pred hhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc-------cCcHH---HHHHHH
Q 002100 756 ADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN-------IKHTR---AHQGLA 825 (967)
Q Consensus 756 a~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-------~~~~~---a~~~la 825 (967)
....++|..+..+++||.+|..+|++++|+..|++|++ ++|+. ....++
T Consensus 384 ---------------------~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~ 442 (490)
T 3n71_A 384 ---------------------LYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRM 442 (490)
T ss_dssp ---------------------HSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred ---------------------HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 12345567778999999999999999999999999987 45654 677899
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHcc
Q 002100 826 RVYHLKNQRKAAYDEMTKLIEKAR 849 (967)
Q Consensus 826 ~~~~~~g~~~~A~~~~~~al~~~p 849 (967)
.++..++.+++|...|.++.+..-
T Consensus 443 ~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 443 QTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999877553
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.6e-08 Score=86.28 Aligned_cols=88 Identities=16% Similarity=0.074 Sum_probs=77.0
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------hHHhh
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSY------MMFYG 624 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~ 624 (967)
.+.+++.+|.+++..|++++|++.|++++..+| ++.++..+|.++..+|++++|+..|+++++++|++ ..++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~- 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ- 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH-
Confidence 346788999999999999999999999999999 89999999999999999999999999999999998 4444
Q ss_pred hhhhhhhHhhhHHHhhchhhH
Q 002100 625 QLHGDNLVETLQPLVQQWSQA 645 (967)
Q Consensus 625 ~~~~~~~~~~l~~~~~~~~~A 645 (967)
+.++.++...++++.|
T Consensus 82 -----~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 82 -----YRLELAQGAVGSVQIP 97 (111)
T ss_dssp -----HHHHHHHHHHHCCCCC
T ss_pred -----HHHHHHHHHHHhHhhh
Confidence 6677788887777776
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.1e-07 Score=86.60 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=91.1
Q ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHH
Q 002100 692 NSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQL 771 (967)
Q Consensus 692 g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~ 771 (967)
+++++|+..|+++.+.... .+. +|.+|...+..++|+.+|+++.+... .
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~--~------------------------- 57 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACELNS--G------------------------- 57 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHTTC--H-------------------------
T ss_pred cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcCCC--H-------------------------
Confidence 5678888888888887643 344 88888888888888888888885522 2
Q ss_pred HHHHhcCCCCCCchHHHHHHhHHHHHh----cccHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hCCHHHHHHHHHH
Q 002100 772 LEEALRCPSDGLRKGQALNNLGSVYVD----CEKLDLAADCYMNALNIKHTRAHQGLARVYHL----KNQRKAAYDEMTK 843 (967)
Q Consensus 772 le~~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~----~g~~~~A~~~~~~ 843 (967)
.+++++|.+|.. .+++++|+.+|++|.+.+++.+.++||.+|.. .+++++|+.+|++
T Consensus 58 ---------------~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 122 (138)
T 1klx_A 58 ---------------NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122 (138)
T ss_dssp ---------------HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 688888998888 78999999999999988888899999999988 8889999999988
Q ss_pred HHHHc
Q 002100 844 LIEKA 848 (967)
Q Consensus 844 al~~~ 848 (967)
+.+..
T Consensus 123 Aa~~g 127 (138)
T 1klx_A 123 ACRLG 127 (138)
T ss_dssp HHHTT
T ss_pred HHHCC
Confidence 88763
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.62 E-value=5.4e-08 Score=86.13 Aligned_cols=74 Identities=9% Similarity=0.103 Sum_probs=65.9
Q ss_pred cCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchh
Q 002100 877 LDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTD 950 (967)
Q Consensus 877 l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~ 950 (967)
.+|+++.+++.+|.+|...|++++|+..|+++++.+|+ ..++..+|.+|..+|++++|+..|++++++.|++.+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 47899999999999999999999999999999999998 569999999999999999999999999999876443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-07 Score=80.59 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=67.1
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 676 GKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 676 ~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
..+..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++++|++.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 77 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999666
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.61 E-value=8e-08 Score=85.00 Aligned_cols=76 Identities=9% Similarity=-0.021 Sum_probs=68.8
Q ss_pred hCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 548 LDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 548 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
.+|+++.+++.+|.+++..|++++|+..|+++++.+| ++.+++.+|.+|..+|++++|+..|++++++.|+.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence 4799999999999999999999999999999999999 899999999999999999999999999999977655444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2e-07 Score=80.07 Aligned_cols=82 Identities=12% Similarity=0.071 Sum_probs=73.5
Q ss_pred CCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhh
Q 002100 551 TLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGD 629 (967)
Q Consensus 551 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 629 (967)
....+++.+|.++...|++++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++++|++..++
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~------ 80 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK------ 80 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHH------
Confidence 4567889999999999999999999999999999 899999999999999999999999999999999998887
Q ss_pred hhHhhhHHH
Q 002100 630 NLVETLQPL 638 (967)
Q Consensus 630 ~~~~~l~~~ 638 (967)
..++.++..
T Consensus 81 ~~l~~~~~~ 89 (91)
T 1na3_A 81 QNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.2e-07 Score=105.50 Aligned_cols=137 Identities=9% Similarity=-0.048 Sum_probs=106.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHH
Q 002100 717 YEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVY 796 (967)
Q Consensus 717 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~ 796 (967)
..+..+..+|+|++|+..+++++++.... ...+++..+..++++|.+|
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~--------------------------------lg~~Hp~~a~~~~nLa~~y 361 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPV--------------------------------FADTNLYVLRLLSIASEVL 361 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTT--------------------------------BCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHh--------------------------------cCCCCHHHHHHHHHHHHHH
Confidence 34456778999999999999999654311 1223455668999999999
Q ss_pred HhcccHHHHHHHHHHHhc-------cCcHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHH
Q 002100 797 VDCEKLDLAADCYMNALN-------IKHTR---AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDM 866 (967)
Q Consensus 797 ~~~g~~~~A~~~~~~Al~-------~~~~~---a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 866 (967)
..+|+|++|+.+|+++++ .+|+. .+.+||.+|..+|++++|...|++++++..
T Consensus 362 ~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~----------------- 424 (490)
T 3n71_A 362 SYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL----------------- 424 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----------------
Confidence 999999999999999987 45554 799999999999999999999999987532
Q ss_pred HHHHHHHhhccCCCC---chHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002100 867 AKSDLSMATQLDPMR---TYPYRYRAAVLMDDHKEAEAIAELSRAIA 910 (967)
Q Consensus 867 A~~~l~~al~l~p~~---~~~~~~la~~~~~~g~~~eAi~~~~kal~ 910 (967)
+. +-|++ .....+++.++.+++++++|...|.++.+
T Consensus 425 ------~~--lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 425 ------VT--HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp ------HH--TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HH--hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23333 34456788888888889999888888765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=6.2e-07 Score=84.51 Aligned_cols=116 Identities=10% Similarity=-0.014 Sum_probs=100.2
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH----cCChHHHHHHHHHH
Q 002100 663 SLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYD----TGHREEALAKAEES 738 (967)
Q Consensus 663 al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~a 738 (967)
|+..|+++.+....... +|.+|...+..++|+..|+++.+. .++.+++++|.+|.. .+++++|+.+|+++
T Consensus 14 A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 87 (138)
T 1klx_A 14 AIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKA 87 (138)
T ss_dssp HHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 38999999988744433 999999999999999999999987 678999999999999 89999999999999
Q ss_pred HhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHh----cccHHHHHHHHHHHhc
Q 002100 739 ISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVD----CEKLDLAADCYMNALN 814 (967)
Q Consensus 739 l~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~ 814 (967)
.+.. +. .+++++|.+|.. .+++++|+.+|++|.+
T Consensus 88 a~~g--~~----------------------------------------~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 88 CGLN--DQ----------------------------------------DGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHTT--CH----------------------------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HcCC--CH----------------------------------------HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 8652 22 689999999999 8999999999999999
Q ss_pred cCcHHHHHHHHH
Q 002100 815 IKHTRAHQGLAR 826 (967)
Q Consensus 815 ~~~~~a~~~la~ 826 (967)
.++..+...|+.
T Consensus 126 ~g~~~A~~~l~~ 137 (138)
T 1klx_A 126 LGSEDACGILNN 137 (138)
T ss_dssp TTCHHHHHHC--
T ss_pred CCCHHHHHHHhh
Confidence 999888777654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=3.5e-07 Score=85.75 Aligned_cols=101 Identities=9% Similarity=0.010 Sum_probs=90.8
Q ss_pred hHHHHHHHHHhhccCCCCchHHHHHHHHHHhCC---CHHHHHHHHHHHHhcC-CC--hHHHHHHHHHHHHcCChHHHHHH
Q 002100 864 RDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDH---KEAEAIAELSRAIAFK-PD--LQLLHLRAAFHDSMGDHLHTQRD 937 (967)
Q Consensus 864 ~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g---~~~eAi~~~~kal~~~-p~--~~~~~~~a~~~~~~g~~~~A~~~ 937 (967)
...+...|.+.++.+|.+..+.+++|+++.+.. +.++++..++..++.+ |+ .+++|++|..|.++|+|++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 355667788888888999999999999999998 6779999999999998 73 46999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhhhhh
Q 002100 938 CEAALCLDPNHTDTLELYDKATERVNE 964 (967)
Q Consensus 938 ~~~al~~~P~~~~~l~l~~r~~~~~~~ 964 (967)
++++|+++|+|.++..+...+++++++
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888753
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.50 E-value=3.1e-06 Score=91.66 Aligned_cols=77 Identities=12% Similarity=0.079 Sum_probs=70.5
Q ss_pred HHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHH
Q 002100 670 MLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEA 747 (967)
Q Consensus 670 ~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 747 (967)
++..+|..+.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|+..|++|+.++|....
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 34677999999999999999999999999999999999986 678889999999999999999999999999997763
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-06 Score=90.13 Aligned_cols=102 Identities=12% Similarity=-0.009 Sum_probs=86.9
Q ss_pred HccCCHHHHHHHHcc---------------CChHHHHHHHHHhhccCCC--CchHHHHHHHHHHhC-----CCHHHHHHH
Q 002100 847 KARNNASAYEKRSEY---------------CDRDMAKSDLSMATQLDPM--RTYPYRYRAAVLMDD-----HKEAEAIAE 904 (967)
Q Consensus 847 ~~p~~~~~~~~~~~~---------------~~~~~A~~~l~~al~l~p~--~~~~~~~la~~~~~~-----g~~~eAi~~ 904 (967)
.+|+++.+++..+.. .....|...+++|+++||+ +..+|..+|.+|... |+.++|.+.
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 456667666665510 3457899999999999999 677999999999995 999999999
Q ss_pred HHHHHhcCCC--hHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCc
Q 002100 905 LSRAIAFKPD--LQLLHLRAAFHDS-MGDHLHTQRDCEAALCLDPNH 948 (967)
Q Consensus 905 ~~kal~~~p~--~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~P~~ 948 (967)
|++|++++|+ ..+++..|..+.. +|++++|.+.+++|+..+|..
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9999999995 5689999999988 599999999999999998884
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.6e-06 Score=92.27 Aligned_cols=76 Identities=13% Similarity=0.081 Sum_probs=70.2
Q ss_pred hhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 002100 874 ATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 874 al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~ 949 (967)
++..+|.++.++..+|.++...|++++|+..+++|++++|+...+..+|.++...|++++|+..|++|+.++|..+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 4577899999999999989888999999999999999998876888899999999999999999999999999886
|
| >1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=3.8e-07 Score=79.63 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=69.5
Q ss_pred cEEEEE-cCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCC-----------CC--
Q 002100 257 DMSFCI-GNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKM-----------LD-- 322 (967)
Q Consensus 257 Dv~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~-----------~~-- 322 (967)
-|+++. +|+.|.++|.+ |.+|..++.||.+++ |+....|.|+. |+..+++.|++|+|... ++
T Consensus 5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp~--V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w 80 (99)
T 1hv2_A 5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELKQ--FDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF 80 (99)
T ss_dssp EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEETT--SCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC
T ss_pred EEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecCC--cCHHHHHHHHHHHHHhcccCCCccccccCCCc
Confidence 477776 99999999997 899999999999877 66667899976 99999999999998632 22
Q ss_pred CCCHHHHHHHHHHhchhCh
Q 002100 323 SFDPRLVLELLSFANRFCC 341 (967)
Q Consensus 323 ~~~~~~~~~ll~~A~~~~~ 341 (967)
.++.+.+.+|+.+|++++|
T Consensus 81 ~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 81 EIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp CCCHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 6789999999999999875
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.3e-07 Score=80.43 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCC-Chh-HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKV-SPD-CLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
.+.+|..+...|++++|+..|+++++.+| ++. +++.+|.+|..+|++++|+..|+++++++|++..++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 35678888888999999999999998888 778 888899999999999999999999999988887766
|
| >2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B | Back alignment and structure |
|---|
Probab=98.38 E-value=3e-07 Score=79.83 Aligned_cols=81 Identities=27% Similarity=0.395 Sum_probs=63.9
Q ss_pred EEEEE-cCeEEEehhHHHhccCHHHHHhhcC--CCCCCccceEEeccCCCCHHHHHHHHHhHcCCC--------CC--CC
Q 002100 258 MSFCI-GNDEIRCVRYKIASLSRPFRTMLYG--GFIESRREKVNFSQNGISVEAMRAAEEFSRTKM--------LD--SF 324 (967)
Q Consensus 258 v~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~--~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~--------~~--~~ 324 (967)
|+++. +|+.|.+||.+ |.+|.+|+.||.+ .+.|+....|.|+. |+..+++.|++|+|... ++ .+
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~--V~~~iL~kVieyc~~h~~~~~~~~~i~~w~v 79 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFRE--IPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 79 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSS--CCHHHHHHHHHHHHHHHHHHSCCSCCCCCCC
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCC--CCHHHHHHHHHHHHHccccCCCcccCCCccc
Confidence 56665 99999999997 8999999999985 34677778899976 99999999999998532 22 57
Q ss_pred CHHHHHHHHHHhchhCh
Q 002100 325 DPRLVLELLSFANRFCC 341 (967)
Q Consensus 325 ~~~~~~~ll~~A~~~~~ 341 (967)
+.+.+.+|+.+|++++|
T Consensus 80 d~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 80 APEIALELLMAANFLDC 96 (96)
T ss_dssp CTTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 88999999999999875
|
| >3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=2e-06 Score=83.13 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=76.7
Q ss_pred cEEEEE-cCeEEEehhHHHhccCHHHHHhhcCCCC----CCccceEEeccCCCCHHHHHHHHHhHcCCCC----------
Q 002100 257 DMSFCI-GNDEIRCVRYKIASLSRPFRTMLYGGFI----ESRREKVNFSQNGISVEAMRAAEEFSRTKML---------- 321 (967)
Q Consensus 257 Dv~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~~~----e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~---------- 321 (967)
-|+|+. +|+.|.+++.+ |.+|..++.|+.+.-. +.....|.|+. |+..+++.|++|++...-
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~Iplpn--V~s~iL~kVieyc~~h~~~~~~~~~~~~ 84 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPN--VRSSVLQKVIEWAEHHRDSNFPDEDDDD 84 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTT--CCHHHHHHHHHHHHHTTTCCCCC-----
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCC--CCHHHHHHHHHHHHHcccCCCccccccc
Confidence 567765 89999999997 7899999999975322 23346899976 999999999999975431
Q ss_pred -------C-------CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCC
Q 002100 322 -------D-------SFDPRLVLELLSFANRFCCEELKSACDSYLASMVS 357 (967)
Q Consensus 322 -------~-------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~ 357 (967)
+ .++.+.+.+|+.+|++++|..|.+.|.+.++..+.
T Consensus 85 ~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik 134 (169)
T 3v7d_A 85 SRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR 134 (169)
T ss_dssp ---CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc
Confidence 0 46678889999999999999999999888877775
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.6e-06 Score=73.81 Aligned_cols=83 Identities=17% Similarity=0.091 Sum_probs=70.9
Q ss_pred CCCCchHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHH
Q 002100 878 DPMRTYPYRYRAAVLMDDHK---EAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLE 953 (967)
Q Consensus 878 ~p~~~~~~~~la~~~~~~g~---~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~ 953 (967)
+|+++..+..+|.+++..++ .++|...++++++.+|+. .++..+|..++..|+|++|+..|+++++.+|.+++.-.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~ 81 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVT 81 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence 68899999999999976655 799999999999999994 59999999999999999999999999999999766555
Q ss_pred HHHHHHh
Q 002100 954 LYDKATE 960 (967)
Q Consensus 954 l~~r~~~ 960 (967)
+...+..
T Consensus 82 i~~~I~~ 88 (93)
T 3bee_A 82 IIESINK 88 (93)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.1e-06 Score=75.17 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=39.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCC-hH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHH
Q 002100 887 YRAAVLMDDHKEAEAIAELSRAIAFKPD-LQ-LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTL 952 (967)
Q Consensus 887 ~la~~~~~~g~~~eAi~~~~kal~~~p~-~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l 952 (967)
.+|.++...|++++|+..|+++++.+|+ .. +++.+|.++..+|++++|+..|+++++++|++..+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4555555566666666666666666555 34 555566666666666666666666666666655554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.4e-05 Score=79.94 Aligned_cols=107 Identities=12% Similarity=-0.068 Sum_probs=81.4
Q ss_pred hcCCCChHHHHHHHHHHHH-----------hcCHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHc-----CChHHHHH
Q 002100 672 ANDPGKSLLRFRQSLLLLR-----------LNSQKAAMRSLRLARNYSTS--EHEKLVYEGWILYDT-----GHREEALA 733 (967)
Q Consensus 672 ~~~p~~~~~~~~~g~~~~~-----------~g~~~~A~~~l~~al~~~p~--~~~a~~~lg~~~~~~-----g~~~eA~~ 733 (967)
+.+|.+...++-.|..+.. ++....|...++++++++|+ +..++..+|.+|... |+.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 3456666555544444432 23467888899999999999 566899999999885 99999999
Q ss_pred HHHHHHhcccch-HHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHh-cccHHHHHHHHHH
Q 002100 734 KAEESISIQRSF-EAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVD-CEKLDLAADCYMN 811 (967)
Q Consensus 734 ~~~~al~~~p~~-~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~-~g~~~~A~~~~~~ 811 (967)
+|+++++++|+. . ..++..|..+.. .+++++|..++++
T Consensus 226 ~ferAL~LnP~~~i----------------------------------------d~~v~YA~~l~~~~gd~~~a~~~L~k 265 (301)
T 3u64_A 226 AFEHLTRYCSAHDP----------------------------------------DHHITYADALCIPLNNRAGFDEALDR 265 (301)
T ss_dssp HHHHHHHHCCTTCS----------------------------------------HHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCc----------------------------------------hHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999953 3 677778888877 4889999999999
Q ss_pred HhccCcH
Q 002100 812 ALNIKHT 818 (967)
Q Consensus 812 Al~~~~~ 818 (967)
++..++.
T Consensus 266 AL~a~p~ 272 (301)
T 3u64_A 266 ALAIDPE 272 (301)
T ss_dssp HHHCCGG
T ss_pred HHcCCCC
Confidence 9985443
|
| >3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.8e-06 Score=74.59 Aligned_cols=94 Identities=7% Similarity=-0.017 Sum_probs=76.1
Q ss_pred cEEEEEcCeEEEehhHHHhccC-HHHHHhhcCCCC----CCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHH-HHH
Q 002100 257 DMSFCIGNDEIRCVRYKIASLS-RPFRTMLYGGFI----ESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPR-LVL 330 (967)
Q Consensus 257 Dv~~~v~~~~~~~hr~vLa~~S-~~F~~~~~~~~~----e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~ 330 (967)
-|+|.|||+.|...+..|+... .+|..||.+... .....++-|. -+|..|+.||+|+.||.+ .++.+ ...
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fiD---Rdp~~F~~IL~~lr~g~l-~~p~~~~~~ 82 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLID---RDPTYFGPVLNYLRHGKL-VINKDLAEE 82 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEEC---SCHHHHHHHHHHHHHSCC-CCCTTSCHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEec---CChHHHHHHHHHhCCCee-CCCCCCCHH
Confidence 4788999999999999998775 478999987531 1234567663 799999999999999999 44433 347
Q ss_pred HHHHHhchhChHHHHHHHHHHHHh
Q 002100 331 ELLSFANRFCCEELKSACDSYLAS 354 (967)
Q Consensus 331 ~ll~~A~~~~~~~l~~~c~~~l~~ 354 (967)
.++.-|++|+|+.|++.|.+.|.+
T Consensus 83 ~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 83 GVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhc
Confidence 889999999999999999998864
|
| >2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.1e-07 Score=80.22 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=69.4
Q ss_pred HhhCCChhhHHHHHHHHHHhChHHHHHHHHHHHhhhhhhcCC--------chhHhhhhccchHHHHHHhhcchHHHHHHH
Q 002100 353 ASMVSDIEDAVMLIEYGLEEAAYLLVAACLQVLLRELPCSMQ--------NPNVMRIFCSAEARERLAMVGHASFVLYYF 424 (967)
Q Consensus 353 ~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~l~--------~~~~~~ll~s~~~~~r~~~~~~e~~~l~~~ 424 (967)
.+.++ ++||+.++.+|+.|+++.|.+.|.+||.+||..... .+.+..+|+++ +.++..+|.++
T Consensus 5 ~~~L~-~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~sd--------v~~E~~vf~av 75 (105)
T 2eqx_A 5 SSGVQ-VGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISDG--------VPCSQNPTEAI 75 (105)
T ss_dssp CCCCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHHTC--------EETTSCHHHHH
T ss_pred hccCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHcCC--------CCCHHHHHHHH
Confidence 35677 999999999999999999999999999999995444 44445555553 45778899999
Q ss_pred HHHhccCcccccchHHHHHHHHH
Q 002100 425 LSQIGMEEDMKSNTTVMLLERLV 447 (967)
Q Consensus 425 l~~l~~~~~~~~~~~~~ll~~l~ 447 (967)
+.|+..+++.|.....++++++.
T Consensus 76 ~~Wv~~d~~~R~~~~~~Ll~~VR 98 (105)
T 2eqx_A 76 EAWINFNKEEREAFAESLRTSLK 98 (105)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCHHHHHHHHHHHHHHHH
Confidence 99999988777777777776643
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=5e-06 Score=93.98 Aligned_cols=99 Identities=7% Similarity=-0.018 Sum_probs=79.5
Q ss_pred CChHHHHHHHHHhhc-----cCCCC---chHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCC-h---HHHHHHHHH
Q 002100 862 CDRDMAKSDLSMATQ-----LDPMR---TYPYRYRAAVLMDDHKEAEAIAELSRAIAF-----KPD-L---QLLHLRAAF 924 (967)
Q Consensus 862 ~~~~~A~~~l~~al~-----l~p~~---~~~~~~la~~~~~~g~~~eAi~~~~kal~~-----~p~-~---~~~~~~a~~ 924 (967)
|++++|+..++++++ +.|++ ...+.++|.+|..+|+|++|+.++++++++ .|+ + ..+.++|.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 455555555555554 34444 456889999999999999999999999975 344 2 288999999
Q ss_pred HHHcCChHHHHHHHHHHHhc-----CCCchhHHHHHHHHHh
Q 002100 925 HDSMGDHLHTQRDCEAALCL-----DPNHTDTLELYDKATE 960 (967)
Q Consensus 925 ~~~~g~~~~A~~~~~~al~~-----~P~~~~~l~l~~r~~~ 960 (967)
|..+|++++|+..|++|+++ .|+|+.+.++.+.+++
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIES 432 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHC
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHhc
Confidence 99999999999999999875 6999999999888764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=8.3e-06 Score=76.45 Aligned_cols=88 Identities=17% Similarity=0.122 Sum_probs=82.0
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcC---cHHHHHHHHHHHhccC-C--ChhHHHHHHHHHHHhcCHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEEN---KLAAAITEINRIIGFK-V--SPDCLELRAWISIALEDYDGALRDV 609 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p--~~~~~~~la~~~~~~g~~~~A~~~~ 609 (967)
..+...|.+.++.+|.+..+.+++|.++...+ ++++++..++.+++.+ | ..++++.+|..|+++|+|++|.+.+
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 56777888888889999999999999999988 7779999999999999 7 5899999999999999999999999
Q ss_pred HHHHHhCCCchHHh
Q 002100 610 RALLTLDPSYMMFY 623 (967)
Q Consensus 610 ~~al~l~p~~~~~~ 623 (967)
+++|+.+|++..+.
T Consensus 95 ~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 95 RGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHCTTCHHHH
T ss_pred HHHHhcCCCCHHHH
Confidence 99999999999887
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.14 E-value=5.4e-06 Score=71.80 Aligned_cols=73 Identities=12% Similarity=0.041 Sum_probs=67.6
Q ss_pred CCCCchhHHHHHHHHHhcCc---HHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchH
Q 002100 549 DPTLSYPYKYRAILLVEENK---LAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMM 621 (967)
Q Consensus 549 ~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 621 (967)
+|+++..+..+|.+++..++ .++|...++++++.+| ++.+++.+|..++..|+|++|+..|+++++.+|..+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 68999999999999987666 7999999999999999 9999999999999999999999999999999998433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-05 Score=71.44 Aligned_cols=100 Identities=9% Similarity=0.025 Sum_probs=87.3
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHH---HHHHHHHHHhcC-CC--hHHHHHHHHHHHHcCChHHHHHHH
Q 002100 865 DMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE---AIAELSRAIAFK-PD--LQLLHLRAAFHDSMGDHLHTQRDC 938 (967)
Q Consensus 865 ~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e---Ai~~~~kal~~~-p~--~~~~~~~a~~~~~~g~~~~A~~~~ 938 (967)
..+...|......++....+.+++|+++.+..+..+ +|..++..+... |. -+.++.+|..+.++|+|++|++.+
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445566777777778888999999999999987776 999999999887 53 358999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHhhhhh
Q 002100 939 EAALCLDPNHTDTLELYDKATERVNE 964 (967)
Q Consensus 939 ~~al~~~P~~~~~l~l~~r~~~~~~~ 964 (967)
+.+|+..|+|.++..+..-+++++.+
T Consensus 98 ~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 98 RGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988753
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.6e-05 Score=88.26 Aligned_cols=111 Identities=14% Similarity=0.005 Sum_probs=87.6
Q ss_pred HHHhcCHHHHHHHHHHHHhcC-----Cc---hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcC
Q 002100 688 LLRLNSQKAAMRSLRLARNYS-----TS---EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSS 759 (967)
Q Consensus 688 ~~~~g~~~~A~~~l~~al~~~-----p~---~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~ 759 (967)
+..+|+|++|+..++++++.. |+ ....+.++|.+|..+|++++|+.++++++++...
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~--------------- 361 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI--------------- 361 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---------------
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH---------------
Confidence 556889999999999999752 33 3567889999999999999999999999965431
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc-------cCcHH---HHHHHHHHHH
Q 002100 760 LNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN-------IKHTR---AHQGLARVYH 829 (967)
Q Consensus 760 ~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-------~~~~~---a~~~la~~~~ 829 (967)
.....+|..+..++++|.+|..+|++++|+..|++|++ ++|+. ++.+|+.+..
T Consensus 362 -----------------~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 362 -----------------FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp -----------------HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred -----------------HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 12345567778999999999999999999999999987 45554 4455655554
Q ss_pred H
Q 002100 830 L 830 (967)
Q Consensus 830 ~ 830 (967)
.
T Consensus 425 e 425 (429)
T 3qwp_A 425 N 425 (429)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.2e-05 Score=69.66 Aligned_cols=79 Identities=14% Similarity=-0.025 Sum_probs=67.2
Q ss_pred chHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------CC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHH
Q 002100 882 TYPYRYRAAVLMDDHKEAEAIAELSRAIAFK-------PD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLE 953 (967)
Q Consensus 882 ~~~~~~la~~~~~~g~~~eAi~~~~kal~~~-------p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~ 953 (967)
+.-.+.+|..+++.++|..|+.+|++|++.. +. ..++..+|.++.++|++++|+..+++++.++|+++.++.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4456789999999999999999999999863 12 358999999999999999999999999999999998865
Q ss_pred HHHHHHh
Q 002100 954 LYDKATE 960 (967)
Q Consensus 954 l~~r~~~ 960 (967)
-+.-++.
T Consensus 85 n~~~~~~ 91 (104)
T 2v5f_A 85 NLKYFEY 91 (104)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 5544443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.9e-05 Score=89.12 Aligned_cols=94 Identities=14% Similarity=0.038 Sum_probs=77.7
Q ss_pred HHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccH
Q 002100 723 YDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKL 802 (967)
Q Consensus 723 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~ 802 (967)
...|+|++|+..+++++++.... ...+++..+..++++|.+|..+|+|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~--------------------------------lg~~Hp~~a~~~~nLa~~y~~~g~~ 356 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSV--------------------------------FEDSNVYMLHMMYQAMGVCLYMQDW 356 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTT--------------------------------BCTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred hhccCHHHHHHHHHHHHHHhhCc--------------------------------cChhchHHHHHHHHHHHHHHhhcCH
Confidence 35689999999999999654311 1223445668999999999999999
Q ss_pred HHHHHHHHHHhc-------cCcHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002100 803 DLAADCYMNALN-------IKHTR---AHQGLARVYHLKNQRKAAYDEMTKLIEKA 848 (967)
Q Consensus 803 ~~A~~~~~~Al~-------~~~~~---a~~~la~~~~~~g~~~~A~~~~~~al~~~ 848 (967)
++|+.+|+++++ .+|++ .+.+||.+|..+|++++|+..|++++++.
T Consensus 357 ~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 357 EGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 999999999987 45555 79999999999999999999999998853
|
| >1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=8.5e-06 Score=72.56 Aligned_cols=82 Identities=27% Similarity=0.367 Sum_probs=63.9
Q ss_pred cEEEE-EcCeEEEehhHHHhccCHHHHHhhcC--CCCCCccceEEeccCCCCHHHHHHHHHhHcCCC--------CC--C
Q 002100 257 DMSFC-IGNDEIRCVRYKIASLSRPFRTMLYG--GFIESRREKVNFSQNGISVEAMRAAEEFSRTKM--------LD--S 323 (967)
Q Consensus 257 Dv~~~-v~~~~~~~hr~vLa~~S~~F~~~~~~--~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~--------~~--~ 323 (967)
-|+|+ .+|+.|.+++. +|..|..++.|+.+ .+.|+....|.|+. |+..+++.|++|++... ++ .
T Consensus 18 ~v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~Iplpn--V~s~iL~kVieyc~~h~~~~~~~~~i~~w~ 94 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFRE--IPSHVLSKVCMYFTYKVRYTNSSTEIPEFP 94 (112)
T ss_dssp EEEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECSS--CCHHHHHHHHHHHHHHHHHSSCSSCCCCCC
T ss_pred EEEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCCC--CCHHHHHHHHHHHHHhhhccCCcCCCCCcc
Confidence 47776 49999999999 57899999999985 45666667899976 99999999999997422 22 6
Q ss_pred CCHHHHHHHHHHhchhCh
Q 002100 324 FDPRLVLELLSFANRFCC 341 (967)
Q Consensus 324 ~~~~~~~~ll~~A~~~~~ 341 (967)
++.+.+.+|+.+|++++|
T Consensus 95 vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 95 IAPEIALELLMAANFLDC 112 (112)
T ss_dssp CCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCc
Confidence 889999999999999875
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=6.2e-05 Score=85.14 Aligned_cols=96 Identities=13% Similarity=0.016 Sum_probs=79.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhc
Q 002100 720 WILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDC 799 (967)
Q Consensus 720 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~ 799 (967)
.-+..+|++++|+..+++++++.... ....++.....++++|.+|..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~--------------------------------lg~~h~~~~~~~~~L~~~y~~~ 342 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSER--------------------------------LPDINIYQLKVLDCAMDACINL 342 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCC--------------------------------CCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCc--------------------------------CCccchHHHHHHHHHHHHHHhh
Confidence 34567899999999999999765411 1223445568899999999999
Q ss_pred ccHHHHHHHHHHHhc-------cCcHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 002100 800 EKLDLAADCYMNALN-------IKHTR---AHQGLARVYHLKNQRKAAYDEMTKLIEK 847 (967)
Q Consensus 800 g~~~~A~~~~~~Al~-------~~~~~---a~~~la~~~~~~g~~~~A~~~~~~al~~ 847 (967)
|+|++|+.+++++++ .+|+. .+.+||.+|..+|++++|+..|++++++
T Consensus 343 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 343 GLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999987 44554 7999999999999999999999999875
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00015 Score=64.22 Aligned_cols=73 Identities=15% Similarity=0.009 Sum_probs=64.6
Q ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHhcc---------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHH
Q 002100 787 QALNNLGSVYVDCEKLDLAADCYMNALNI---------KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEK 857 (967)
Q Consensus 787 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~~---------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 857 (967)
.-.+.+|..++..++|..|+.+|++|++. ....++..||.+++++|+++.|+..++++++..|++..+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 56788999999999999999999999982 123589999999999999999999999999999999888766
Q ss_pred HH
Q 002100 858 RS 859 (967)
Q Consensus 858 ~~ 859 (967)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00047 Score=62.11 Aligned_cols=88 Identities=17% Similarity=0.089 Sum_probs=79.7
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHH---HHHHHHHHhccC-C--ChhHHHHHHHHHHHhcCHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAA---AITEINRIIGFK-V--SPDCLELRAWISIALEDYDGALRDV 609 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p--~~~~~~~la~~~~~~g~~~~A~~~~ 609 (967)
..+...|.+.+..++....+.+.+|.++....+... +|..++.++..+ | .-++++.+|..++++|+|++|...+
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 566677888888888889999999999999887766 999999999988 6 6789999999999999999999999
Q ss_pred HHHHHhCCCchHHh
Q 002100 610 RALLTLDPSYMMFY 623 (967)
Q Consensus 610 ~~al~l~p~~~~~~ 623 (967)
+.+|+.+|+|..+.
T Consensus 98 ~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 98 RGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHCTTCHHHH
T ss_pred HHHHHhCCCCHHHH
Confidence 99999999999887
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00047 Score=62.98 Aligned_cols=86 Identities=10% Similarity=0.021 Sum_probs=77.0
Q ss_pred CCCchHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHH
Q 002100 879 PMRTYPYRYRAAVLMDDHK---EAEAIAELSRAIAFKPD--LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLE 953 (967)
Q Consensus 879 p~~~~~~~~la~~~~~~g~---~~eAi~~~~kal~~~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~ 953 (967)
.-...+.+++|+++.+..+ ..++|..++..+...|. -+.++.+|..+.++|+|++|+++.+.+|+..|+|.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 5567889999999999865 45799999999998886 359999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhh
Q 002100 954 LYDKATERVNE 964 (967)
Q Consensus 954 l~~r~~~~~~~ 964 (967)
+...+++++.+
T Consensus 116 Lk~~Ie~~i~k 126 (144)
T 1y8m_A 116 LKSMVEDKIQK 126 (144)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988753
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00033 Score=63.17 Aligned_cols=84 Identities=11% Similarity=0.023 Sum_probs=75.6
Q ss_pred CchHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 002100 881 RTYPYRYRAAVLMDDHK---EAEAIAELSRAIAFKPD--LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELY 955 (967)
Q Consensus 881 ~~~~~~~la~~~~~~g~---~~eAi~~~~kal~~~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~ 955 (967)
.+.+.+++|+++.+..+ ..++|..++..+...|. -+.++.+|..+.++|+|++|+++.+.+|+..|+|.++..+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 56888999999999865 45799999999998885 35899999999999999999999999999999999999999
Q ss_pred HHHHhhhhh
Q 002100 956 DKATERVNE 964 (967)
Q Consensus 956 ~r~~~~~~~ 964 (967)
..+++++.+
T Consensus 119 ~~Ie~ki~k 127 (134)
T 3o48_A 119 SMVEDKIQK 127 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998763
|
| >3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00026 Score=69.01 Aligned_cols=95 Identities=7% Similarity=-0.022 Sum_probs=74.5
Q ss_pred cEEEEEcCeEEEehhHHHhccC-HHHHHhhcCCC--C--CCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHH-HHH
Q 002100 257 DMSFCIGNDEIRCVRYKIASLS-RPFRTMLYGGF--I--ESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPR-LVL 330 (967)
Q Consensus 257 Dv~~~v~~~~~~~hr~vLa~~S-~~F~~~~~~~~--~--e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~ 330 (967)
=|+|.|||..|...+..|.... .+|..||.+.. . .....++-|. -+|..|+.||+|+.+|.+ .++++ ...
T Consensus 13 ~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFID---RDP~~F~~ILnyLRtG~L-~lP~~~~~~ 88 (202)
T 3drx_A 13 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLID---RDPTYFGPVLNYLRHGKL-VINKDLAEE 88 (202)
T ss_dssp EEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEEC---SCSTTHHHHHHHHHHSCC-CCCTTSCHH
T ss_pred EEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEec---CChHHHHHHHHHhcCCcc-CCCCCCCHH
Confidence 4778899999999999998764 37899998652 1 1134567674 699999999999999999 44433 236
Q ss_pred HHHHHhchhChHHHHHHHHHHHHhh
Q 002100 331 ELLSFANRFCCEELKSACDSYLASM 355 (967)
Q Consensus 331 ~ll~~A~~~~~~~l~~~c~~~l~~~ 355 (967)
.++.-|++|+|+.|++.|...|.+.
T Consensus 89 ~l~eEA~FygL~~Lv~~l~~~i~er 113 (202)
T 3drx_A 89 GVLEEAEFYNITSLIKLVKDKIRER 113 (202)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 7899999999999999999988644
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.03 Score=64.50 Aligned_cols=161 Identities=12% Similarity=0.044 Sum_probs=120.2
Q ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhcc--CcH-HHHHHHHHHHHHhC---------CHHHHHHHHHHHHHHcc-CCHHH
Q 002100 788 ALNNLGSVYVDCEKLDLAADCYMNALNI--KHT-RAHQGLARVYHLKN---------QRKAAYDEMTKLIEKAR-NNASA 854 (967)
Q Consensus 788 a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~-~a~~~la~~~~~~g---------~~~~A~~~~~~al~~~p-~~~~~ 854 (967)
.++.+-..+.+.|+.++|++.|++..+. .+. ..+..|-.++...+ ..+.|.+.|++..+..- .+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3555557788999999999999998873 333 25555555554433 36889999988776542 24555
Q ss_pred HHHHH----ccCChHHHHHHHHHhhcc--CCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHH
Q 002100 855 YEKRS----EYCDRDMAKSDLSMATQL--DPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAF--KPDLQLLHLRAAFHD 926 (967)
Q Consensus 855 ~~~~~----~~~~~~~A~~~l~~al~l--~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~--~p~~~~~~~~a~~~~ 926 (967)
|..+- ..|+.++|...|++..+. .| +...|..+-..|.+.|+.++|.+.|++..+. .|+...|..+-..+.
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 54443 348999999999987764 34 4667888888999999999999999998864 566678888999999
Q ss_pred HcCChHHHHHHHHHHHhc--CCCch
Q 002100 927 SMGDHLHTQRDCEAALCL--DPNHT 949 (967)
Q Consensus 927 ~~g~~~~A~~~~~~al~~--~P~~~ 949 (967)
+.|+.++|.+.+++..+. .|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHH
Confidence 999999999999988654 46543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0089 Score=54.94 Aligned_cols=120 Identities=13% Similarity=-0.017 Sum_probs=76.7
Q ss_pred HhccCcHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHH
Q 002100 812 ALNIKHTRAHQGLARVYHLKNQR------KAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPY 885 (967)
Q Consensus 812 Al~~~~~~a~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~ 885 (967)
.+.+++.+.|........+.|+. +.-++.|++++..-|... -.......+.|
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k----------------------~~~wrrYI~LW 64 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK----------------------YGQNESFARIQ 64 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG----------------------GTTCHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc----------------------cccHHHHHHHH
Confidence 44566666777777777777777 666677777777666310 00011123344
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHH
Q 002100 886 RYRAAVLMDDHKEAEAIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLEL 954 (967)
Q Consensus 886 ~~la~~~~~~g~~~eAi~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l 954 (967)
...|. +...++.++|...|+.+++..... .++...|.+-.++|+..+|.+.+.+|+.+.|...++++.
T Consensus 65 IrYA~-~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 65 VRFAE-LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHHHH-HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHHHH-HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 44553 345577778888888877765553 377777778888888888888888888888877777664
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0056 Score=57.59 Aligned_cols=136 Identities=12% Similarity=0.025 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchh---------HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEH---------EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAF 748 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~---------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 748 (967)
.+.++.....++..+.|+.|+.....++....+++ ++++++|.+++..++|..|...|++++.....-...
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 35667777888899999999998888766543333 478999999999999999999999998654411100
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc-cCcHHHHHHHHHH
Q 002100 749 FLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN-IKHTRAHQGLARV 827 (967)
Q Consensus 749 ~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-~~~~~a~~~la~~ 827 (967)
- ... .. .. .+.......+.....+..+.++.+|.+.+++++|+..++..-. ...+.....||++
T Consensus 100 ~-s~~----~~---------~~-~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 100 S-KVR----PS---------TG-NSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANL 164 (167)
T ss_dssp --------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHH
T ss_pred C-Ccc----cc---------cc-ccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHH
Confidence 0 000 00 00 0000000001233456778899999999999999998876533 3444566677776
Q ss_pred H
Q 002100 828 Y 828 (967)
Q Consensus 828 ~ 828 (967)
|
T Consensus 165 y 165 (167)
T 3ffl_A 165 Y 165 (167)
T ss_dssp C
T ss_pred h
Confidence 5
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.064 Score=61.67 Aligned_cols=153 Identities=9% Similarity=0.033 Sum_probs=109.9
Q ss_pred HHHhhcCChHHHHHHHHHHHHhC--c-hhHHHHHHHHHHhcC---------ChHHHHHHHHHHHhc-c-Cc------chh
Q 002100 465 VVMLEREEYKDAQNWFKAAVEAG--H-IYSLVGVARTKFKRG---------HKYSAYKLMNSLISD-Y-TP------VGW 524 (967)
Q Consensus 465 ~~~~~~g~y~~A~~~f~~al~~~--~-~~a~~~la~~~~~~g---------~~~~A~~~l~~~i~~-~-~~------~g~ 524 (967)
..+.+.|++++|++.|++..+.+ | ......+-.++.+.+ ....|.+++.+.... . |+ +-.
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~ 113 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGAR 113 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 56678999999999999998874 2 333333333443333 246788888887662 1 22 223
Q ss_pred HHHHHhhcCChHHHHHHHHHhHhhC-CCCchhHHHHHHHHHhcCcHHHHHHHHHHHhcc--CCChhHHHHHHHHHHHhcC
Q 002100 525 MYQERSLYCSGKEKMMDLNTATELD-PTLSYPYKYRAILLVEENKLAAAITEINRIIGF--KVSPDCLELRAWISIALED 601 (967)
Q Consensus 525 ~~~~~~~y~~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~g~ 601 (967)
.|...+ +.++|+..|++..+.. +-+...|..+-..|.+.|+.++|.+.|++..+. .|+...|..+-..|.+.|+
T Consensus 114 ~~~~~g---~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 114 LAVAKD---DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN 190 (501)
T ss_dssp HHHHHT---CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhcC---CHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence 344444 5599999999887652 225667888888899999999999999987754 5588899999999999999
Q ss_pred HHHHHHHHHHHHHh--CCCch
Q 002100 602 YDGALRDVRALLTL--DPSYM 620 (967)
Q Consensus 602 ~~~A~~~~~~al~l--~p~~~ 620 (967)
.++|.+.+++.-+. .|+..
T Consensus 191 ~d~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 191 ADKVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp HHHHHHHHHHHHHHTSSBCHH
T ss_pred HHHHHHHHHHHHHhCCCcCHH
Confidence 99999999887664 45533
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.024 Score=52.13 Aligned_cols=116 Identities=11% Similarity=0.032 Sum_probs=86.8
Q ss_pred cCCchhHHHHHHHHHHHHcCCh------HHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCC
Q 002100 707 YSTSEHEKLVYEGWILYDTGHR------EEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPS 780 (967)
Q Consensus 707 ~~p~~~~a~~~lg~~~~~~g~~------~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~ 780 (967)
..|++++.|......+.+.|+. ++-+..|++|+..-|-.. ..
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k--------------------------------~~ 55 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK--------------------------------YG 55 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG--------------------------------GT
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc--------------------------------cc
Confidence 5788999999988888888998 888889999987666111 00
Q ss_pred CCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHH
Q 002100 781 DGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAY 855 (967)
Q Consensus 781 ~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 855 (967)
........|...+.. ...++.++|.+.|+.+++. ....+|...|....++|+...|.+.+.+++...|.....+
T Consensus 56 ~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 56 QNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp TCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred cHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 111223455555544 5669999999999999874 2234888899999999999999999999999999765543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.034 Score=50.77 Aligned_cols=74 Identities=15% Similarity=0.069 Sum_probs=66.6
Q ss_pred CCCchhHHHHHHHHHhcCcH---HHHHHHHHHHhccCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 550 PTLSYPYKYRAILLVEENKL---AAAITEINRIIGFKV--SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 550 P~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
.-...+.++.|.++....+. .+++..++..+...| .-++++.+|.-++++|+|++|.++.+.+|+.+|+|..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 45678899999999988754 579999999999888 578999999999999999999999999999999998887
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.8 Score=50.18 Aligned_cols=99 Identities=15% Similarity=0.010 Sum_probs=73.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHH
Q 002100 717 YEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVY 796 (967)
Q Consensus 717 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~ 796 (967)
.+|.+|+..|+|.+|.+.+.+...--.. ..+.....+.+..-..+|
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~----------------------------------~dd~~~llev~lle~~~~ 149 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKK----------------------------------LDDKNLLVEVQLLESKTY 149 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTT----------------------------------SSCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhc----------------------------------cccchhHHHHHHHHHHHH
Confidence 7899999999999999999887732210 001112235667778889
Q ss_pred HhcccHHHHHHHHHHHhc----c-CcHH----HHHHHHHHHH-HhCCHHHHHHHHHHHHHHcc
Q 002100 797 VDCEKLDLAADCYMNALN----I-KHTR----AHQGLARVYH-LKNQRKAAYDEMTKLIEKAR 849 (967)
Q Consensus 797 ~~~g~~~~A~~~~~~Al~----~-~~~~----a~~~la~~~~-~~g~~~~A~~~~~~al~~~p 849 (967)
...+++.++...|.+|.. + .|+. ....-|..+. ..++|..|...|-.+++...
T Consensus 150 ~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 150 HALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 999999999999999876 2 3332 4555777888 89999999999988876543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.03 Score=52.67 Aligned_cols=130 Identities=12% Similarity=-0.081 Sum_probs=72.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhC---ch--------hHHHHHHHHHHhcCChHHHHHHHHHHHhccCcch---h
Q 002100 459 AFHQLGVVMLEREEYKDAQNWFKAAVEAG---HI--------YSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVG---W 524 (967)
Q Consensus 459 a~~~lG~~~~~~g~y~~A~~~f~~al~~~---~~--------~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g---~ 524 (967)
+++.-...++..+.|+.|+-....++... +. .+...+|.+++.+|++..|...|++++....... .
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44445555666666666666666655541 11 1445566666666666666666666555221110 0
Q ss_pred HHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 002100 525 MYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWIS 596 (967)
Q Consensus 525 ~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~ 596 (967)
.....+. .........+ +.+.+..+..|.||.+.+++++|+..++.+-...-++.....+|.+|
T Consensus 102 ~~~~~~~-------~ss~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGN-------SASTPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred ccccccc-------cCCCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 0000000 0000001111 34557888999999999999999999876544444788888888876
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.04 Score=49.67 Aligned_cols=72 Identities=15% Similarity=0.068 Sum_probs=64.6
Q ss_pred CchhHHHHHHHHHhcCcH---HHHHHHHHHHhccCC--ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 552 LSYPYKYRAILLVEENKL---AAAITEINRIIGFKV--SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
.+.+-++.|.++....+. .+++..++.++..+| .-++++.+|..++++|+|++|.+..+.+|+..|+|..+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 457788999988887654 579999999999888 588999999999999999999999999999999999887
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=4 Score=47.63 Aligned_cols=137 Identities=9% Similarity=-0.099 Sum_probs=90.0
Q ss_pred HHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHH
Q 002100 796 YVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSM 873 (967)
Q Consensus 796 ~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~ 873 (967)
.+..++++.|...|++.-.. ......+.+|+++..+|+.++|...|.++.. +.+-..+.....+|.... . .
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~~fYg~lAa~~Lg~~~~-~---~- 367 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QRGFYPMVAAQRIGEEYE-L---K- 367 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSHHHHHHHHHTTCCCC-C---C-
T ss_pred HHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCChHHHHHHHHcCCCCC-C---C-
Confidence 34669999999999876552 3455889999999999999999999999975 333333222223322100 0 0
Q ss_pred hhccCCCCc-----hHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 874 ATQLDPMRT-----YPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 874 al~l~p~~~-----~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
.....+... ..-..++..+...|....|...+..++... ++.-...++.+....|.+..++....+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~-~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 368 IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK-SKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 001111111 133567788899999999999999887653 344445677788888888877765543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.49 Score=51.90 Aligned_cols=165 Identities=13% Similarity=0.034 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChH
Q 002100 457 QLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGK 536 (967)
Q Consensus 457 a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~ 536 (967)
-.+.+.||..|...|++++-.+.+...... ...... .++.+..+.+++.+....... +
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~k----------ak~~k~v~~l~~~~~~~~~~~---------~ 76 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPF---LSSISK----------AKAAKLVRSLVDMFLDMDAGT---------G 76 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTG---GGGSCH----------HHHHHHHHHHHHHHTTSCCCH---------H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---HHHhch----------HHHHHHHHHHHHHHhcCCCcH---------H
Confidence 357889999999999999999888765443 222221 134556666666554332221 1
Q ss_pred HHHHHHHHhHhhCCCCchhH------HHHHHHHHhcCcHHHHHHHHHHHhcc----C-C--ChhHHHHHHHHHHHhcCHH
Q 002100 537 EKMMDLNTATELDPTLSYPY------KYRAILLVEENKLAAAITEINRIIGF----K-V--SPDCLELRAWISIALEDYD 603 (967)
Q Consensus 537 ~A~~~~~~al~l~P~~~~~~------~~la~~~~~~g~~~~A~~~~~~al~~----~-p--~~~~~~~la~~~~~~g~~~ 603 (967)
.-+....++++-.-+.-..| ..+|..|+..|+|.+|++.+.++... + + -.+.+..-..+|..++++.
T Consensus 77 ~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~ 156 (394)
T 3txn_A 77 IEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLP 156 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHH
Confidence 11222222222111111122 27899999999999999999888763 2 2 3668888899999999999
Q ss_pred HHHHHHHHHHHhC---CCchHHhhhhhhhhhHhhhHH-HhhchhhH
Q 002100 604 GALRDVRALLTLD---PSYMMFYGQLHGDNLVETLQP-LVQQWSQA 645 (967)
Q Consensus 604 ~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~l~~-~~~~~~~A 645 (967)
++...|.++.+.. +-++...+.+. ..-|.++. ..++|.+|
T Consensus 157 k~k~~l~~a~~~~~ai~~~p~i~a~i~--~~~Gi~~l~~~rdyk~A 200 (394)
T 3txn_A 157 KARAALTSARTTANAIYCPPKVQGALD--LQSGILHAADERDFKTA 200 (394)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHH--HHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHhhhccCCCCHHHHHHHH--HHhhHHHHHhccCHHHH
Confidence 9999999987663 12333333222 45577777 78889888
|
| >1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.015 Score=52.51 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=66.4
Q ss_pred cEEEEEcCeEEEehhHHHhccCHHHHHhhcCC----CCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHH-HHHH
Q 002100 257 DMSFCIGNDEIRCVRYKIASLSRPFRTMLYGG----FIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPR-LVLE 331 (967)
Q Consensus 257 Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~----~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~~ 331 (967)
=|+|.|||..|..-+..|..... .||... +......++-|. =+|..|+.||.|+.+|.+ .++++ .+..
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~FiD---Rdp~~F~~ILnflR~G~l-~~p~~~~~~~ 86 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKL-HYPRYECISA 86 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEEC---SCHHHHHHHHHHHHHSCB-CCCTTSCHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEEc---CChHHHHHHHHHHhcCCC-CCCCCcCHHH
Confidence 47889999999999999975422 234321 112234567775 599999999999999999 45443 4788
Q ss_pred HHHHhchhChHHH--HHHHHHHHHhh
Q 002100 332 LLSFANRFCCEEL--KSACDSYLASM 355 (967)
Q Consensus 332 ll~~A~~~~~~~l--~~~c~~~l~~~ 355 (967)
++.-|++|+|+.+ ...|...+.+.
T Consensus 87 l~~Ea~fy~i~~l~l~~cC~~~~~~~ 112 (124)
T 1s1g_A 87 YDDELAFYGILPEIIGDCCYEEYKDR 112 (124)
T ss_dssp HHHHHHHTTCCGGGBCHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 9999999999987 35555555443
|
| >3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0042 Score=55.36 Aligned_cols=96 Identities=6% Similarity=0.036 Sum_probs=69.4
Q ss_pred cEEEEEcCeEEEehhHHHhccCH-HHHHhhcCCC-CCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHH-HHHHHH
Q 002100 257 DMSFCIGNDEIRCVRYKIASLSR-PFRTMLYGGF-IESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPR-LVLELL 333 (967)
Q Consensus 257 Dv~~~v~~~~~~~hr~vLa~~S~-~F~~~~~~~~-~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~~ll 333 (967)
=|+|.|||..|...+..|..... .|..||.+.. ......++-|. -+|..|+.||.|+.+|++ .++++ .+..++
T Consensus 6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiD---Rdp~~F~~ILnylR~G~l-~~p~~~~~~~~~ 81 (115)
T 3kvt_A 6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFD---RHPGVFAQIINYYRSGKL-HYPTDVCGPLFE 81 (115)
T ss_dssp EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEEC---SCTTTHHHHHHHHHHSCB-CCCSSSCHHHHH
T ss_pred EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEe---cChHHHHHHHHHhcCCCC-CCCCcccHHHHH
Confidence 37889999999999999986633 4566665432 12345577774 599999999999999999 44432 457889
Q ss_pred HHhchhChHHHH--HHHHHHHHhhC
Q 002100 334 SFANRFCCEELK--SACDSYLASMV 356 (967)
Q Consensus 334 ~~A~~~~~~~l~--~~c~~~l~~~~ 356 (967)
.-|++|+|+... .-|...+.+.-
T Consensus 82 ~Ea~fy~i~~~~l~~CC~~~~~~~~ 106 (115)
T 3kvt_A 82 EELEFWGLDSNQVEPCCWMTYTAHR 106 (115)
T ss_dssp HHHHHHTCCGGGBCGGGSHHHHSCC
T ss_pred HHHHHhCCChHHHHHHHHHHHHhcc
Confidence 999999998763 23555555443
|
| >1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A | Back alignment and structure |
|---|
Probab=94.78 E-value=0.016 Score=50.12 Aligned_cols=84 Identities=7% Similarity=-0.041 Sum_probs=60.0
Q ss_pred EEEEEcCeEEEehhHHHhccCH-HHHHhhcC-CCCCCccceEEeccCCCCHHHHHHHHHhHcC-CCCCCCCH-HHHHHHH
Q 002100 258 MSFCIGNDEIRCVRYKIASLSR-PFRTMLYG-GFIESRREKVNFSQNGISVEAMRAAEEFSRT-KMLDSFDP-RLVLELL 333 (967)
Q Consensus 258 v~~~v~~~~~~~hr~vLa~~S~-~F~~~~~~-~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt-~~~~~~~~-~~~~~ll 333 (967)
|+|.|||..|...+..|...-. .+..|+.. ........++-|. -+|..|+.||.|+.| |++ .+++ ..+..++
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFiD---Rdp~~F~~ILnflR~~G~l-~~p~~~~~~~~~ 78 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFD---RNRPSFDAILYFYQSGGRL-RRPVNVPLDVFS 78 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEEC---SCSTTHHHHHHHHHTTSCC-CCCTTSCHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEEc---CChHHHHHHHHHHhcCCcc-cCCCCCCHHHHH
Confidence 7889999999999999965421 23333321 1112245577774 599999999999999 898 4433 2467889
Q ss_pred HHhchhChHHHH
Q 002100 334 SFANRFCCEELK 345 (967)
Q Consensus 334 ~~A~~~~~~~l~ 345 (967)
.-|++|+|+.+.
T Consensus 79 ~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 79 EEIKFYELGENA 90 (100)
T ss_dssp HHHHHTTCCHHH
T ss_pred HHHHHcCCCHHH
Confidence 999999998753
|
| >1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.013 Score=51.26 Aligned_cols=88 Identities=13% Similarity=0.139 Sum_probs=63.2
Q ss_pred EEEEEcCeEEEehhHHHhccCHHHHHhhcCC----CCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHH-HHHHH
Q 002100 258 MSFCIGNDEIRCVRYKIASLSRPFRTMLYGG----FIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPR-LVLEL 332 (967)
Q Consensus 258 v~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~----~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~~l 332 (967)
|+|.|||..|...+..|..... .||... +......++-|. =+|..|+.||.|+.||.+ .++++ .+..+
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~FiD---Rdp~~F~~ILnflR~g~l-~~p~~~~~~~l 74 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFFD---RDPDIFRHILNFYRTGKL-HYPRHECISAY 74 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEEC---SCTTTHHHHHHHHHHSCB-CCCTTSCHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEEe---CCcHHHHHHHHHHhcCCC-CCCCCcCHHHH
Confidence 7899999999999999976432 233321 111234567775 599999999999999999 44433 47889
Q ss_pred HHHhchhChHHH--HHHHHHHH
Q 002100 333 LSFANRFCCEEL--KSACDSYL 352 (967)
Q Consensus 333 l~~A~~~~~~~l--~~~c~~~l 352 (967)
+.-|++|+|+.+ ...|....
T Consensus 75 ~~Ea~fy~i~~l~~~~cc~~~~ 96 (105)
T 1nn7_A 75 DEELAFFGLIPEIIGDCCYEEY 96 (105)
T ss_dssp HHHHHHHTCCSCCBCHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999986 33454444
|
| >2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.023 Score=52.40 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=65.8
Q ss_pred cEEEEEcCeEEEehhHHHhccCHHHHHhhcCC----CCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHH-HHHH
Q 002100 257 DMSFCIGNDEIRCVRYKIASLSRPFRTMLYGG----FIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPR-LVLE 331 (967)
Q Consensus 257 Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~----~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~~ 331 (967)
=|+|.|||..|...+..|.... ..||... +......++-|. =++..|+.||+|+.+|.+ .++++ .+..
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~P---~S~L~~~~~~~~~~~~~g~yFiD---Rdp~~F~~ILnflR~G~l-~~p~~~~~~~ 108 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKL-HYPRYECISA 108 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTCT---TSTTTSGGGGGSEETTTTEEEEC---SCHHHHHHHHHHHHHSSB-CCCTTSCHHH
T ss_pred EEEEEECCEEEEeeHHHHhcCC---CeeecccCCcccccCCCCeEEEe---CCcHHHHHHHHHHhcCCc-CCCCCcCHHH
Confidence 4888999999999999997542 2344331 111234567775 599999999999999999 44433 4788
Q ss_pred HHHHhchhChHHH--HHHHHHHHHhh
Q 002100 332 LLSFANRFCCEEL--KSACDSYLASM 355 (967)
Q Consensus 332 ll~~A~~~~~~~l--~~~c~~~l~~~ 355 (967)
++.-|++|+|+.+ ...|...+...
T Consensus 109 l~eEa~fy~i~~l~l~~CC~~~~~~~ 134 (140)
T 2nz0_B 109 YDDELAFYGILPEIIGDCCYEEYKDR 134 (140)
T ss_dssp HHHHHHHHTCCGGGBCTTTHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 9999999999987 33455544443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=11 Score=43.91 Aligned_cols=118 Identities=10% Similarity=-0.089 Sum_probs=60.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHHH-HHH---HH--cc--CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCC
Q 002100 825 ARVYHLKNQRKAAYDEMTKLIEKARNNASA-YEK---RS--EY--CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDH 896 (967)
Q Consensus 825 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~---~~--~~--~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g 896 (967)
+.......+.+.|...+.......+-+... ... .+ .. +...++...+.+.....+++ .....++...++.|
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVRMALGTG 299 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh-HHHHHHHHHHHHCC
Confidence 333344446666766666554433222211 111 11 11 22445555555544333322 22333333344557
Q ss_pred CHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002100 897 KEAEAIAELSRAIAFKP-DLQLLHLRAAFHDSMGDHLHTQRDCEAALC 943 (967)
Q Consensus 897 ~~~eAi~~~~kal~~~p-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 943 (967)
+++.|...|++.-.... .....+.+|.++..+|+.++|...|+++..
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777777765533221 234667777777777777777777777764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.18 E-value=2.4 Score=51.53 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=27.2
Q ss_pred HhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002100 797 VDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKL 844 (967)
Q Consensus 797 ~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~a 844 (967)
...|++++|.+.. ..++....|..+|..+.+.++++.|...|.++
T Consensus 663 l~~~~~~~A~~~~---~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLL---TDESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHH---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHH---HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4556666665553 33455556666666666666666666666654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.21 Score=59.53 Aligned_cols=60 Identities=15% Similarity=0.013 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEES 738 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~a 738 (967)
.++..++..++..|+++-|+.+-++++...|.+...|+.|+.+|..+|+++.|+-.+...
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 456667888899999999999999999999999999999999999999999999877654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.29 E-value=1.2 Score=52.90 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 555 PYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRAL 612 (967)
Q Consensus 555 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a 612 (967)
.+...+..+...|+|+-|++.-++++...| +...|+.|+.+|..+|+|+.|+-.++..
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 455567788889999999999999999999 8999999999999999999999776554
|
| >2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A | Back alignment and structure |
|---|
Probab=91.69 E-value=0.023 Score=54.19 Aligned_cols=7 Identities=43% Similarity=0.553 Sum_probs=2.6
Q ss_pred CCCCCCC
Q 002100 58 GSSVGEK 64 (967)
Q Consensus 58 ~~~~~~~ 64 (967)
||.||.+
T Consensus 192 ~~~~~~~ 198 (215)
T 2l6f_A 192 GGSGGSG 198 (215)
Confidence 3333333
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.31 E-value=4.9 Score=48.71 Aligned_cols=100 Identities=20% Similarity=0.045 Sum_probs=58.3
Q ss_pred HHHHhcCcHHHHHH-HHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHh
Q 002100 561 ILLVEENKLAAAIT-EINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLV 639 (967)
Q Consensus 561 ~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~ 639 (967)
......+++++|.+ .+ ..-|+...+...+..+...|.+++|+...+ +| ... -.+....
T Consensus 607 ~~~~~~~~~~~a~~~~l----~~i~~~~~~~~~~~~l~~~~~~~~a~~~~~-----~~---~~~---------f~~~l~~ 665 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVL----PNVEGKDSLTKIARFLEGQEYYEEALNISP-----DQ---DQK---------FELALKV 665 (814)
T ss_dssp HHHHHTTCHHHHHHHTG----GGCCCHHHHHHHHHHHHHTTCHHHHHHHCC-----CH---HHH---------HHHHHHH
T ss_pred hHHHHhCCHHHHHHHHH----hcCCchHHHHHHHHHHHhCCChHHheecCC-----Cc---chh---------eehhhhc
Confidence 34456788888865 33 111112233566667777888888776442 11 111 1234556
Q ss_pred hchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002100 640 QQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLA 704 (967)
Q Consensus 640 ~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~a 704 (967)
++++.| ++.. ...+++..|..+|..+.+.++++.|+++|.++
T Consensus 666 ~~~~~A------------------~~~~-----~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 666 GQLTLA------------------RDLL-----TDESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHH------------------HHHH-----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHH------------------HHHH-----HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 667776 2221 22345677788888888888888888887765
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=92.29 E-value=13 Score=39.31 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=29.9
Q ss_pred cchHHHHHHHHHHHhhhc-----hHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 002100 436 SNTTVMLLERLVESATES-----WQKQLAFHQLGVVMLEREEYKDAQNWFKAA 483 (967)
Q Consensus 436 ~~~~~~ll~~l~~~~~~~-----~~~a~a~~~lG~~~~~~g~y~~A~~~f~~a 483 (967)
++...+.+.++.+..... .+....+.-+..-|.++++|++|++.+...
T Consensus 9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~G 61 (336)
T 3lpz_A 9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASV 61 (336)
T ss_dssp -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 344555666665554432 233344555677788999999999975543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=91.85 E-value=2.3 Score=43.33 Aligned_cols=63 Identities=14% Similarity=0.039 Sum_probs=56.9
Q ss_pred HHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 561 ILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
..+++.|+.++|++.+...++.+| +......+..++.-.|+|+.|...++.+.+++|+.....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 346778999999999999999999 999999999999999999999999999999999866544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.71 E-value=19 Score=40.14 Aligned_cols=102 Identities=12% Similarity=-0.108 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHh
Q 002100 713 EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNL 792 (967)
Q Consensus 713 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~l 792 (967)
.....++.++...|++.+|...+.....--- .. .+...+...+...
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~----------------~~------------------~~~~~kve~~l~q 183 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETY----------------GS------------------MEMSEKIQFILEQ 183 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC----------------SS------------------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHH----------------hc------------------ccHHHHHHHHHHH
Confidence 3446789999999999999998887651100 00 0111233566777
Q ss_pred HHHHHhcccHHHHHHHHHHHhc-----cCcHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHc
Q 002100 793 GSVYVDCEKLDLAADCYMNALN-----IKHTR----AHQGLARVYHLKNQRKAAYDEMTKLIEKA 848 (967)
Q Consensus 793 g~~~~~~g~~~~A~~~~~~Al~-----~~~~~----a~~~la~~~~~~g~~~~A~~~~~~al~~~ 848 (967)
..+|...+++.+|...++++.. ..++. .+...|.++...++|.+|...|..+.+..
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 8889999999999999998743 23332 56778999999999999999999888753
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=91.66 E-value=8.6 Score=35.87 Aligned_cols=69 Identities=20% Similarity=0.160 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----------------CCchhHH-HHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 678 SLLRFRQSLLLLRLNSQKAAMRSLRLARNY-----------------STSEHEK-LVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 678 ~~~~~~~g~~~~~~g~~~~A~~~l~~al~~-----------------~p~~~~a-~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
....+..+.+|...++|..|+.+++..++- +|.+-+. +..+|.++.+.|+.+||+.++..+.
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 445556778888888888888888888832 2334333 4568999999999999999999999
Q ss_pred hcccchH
Q 002100 740 SIQRSFE 746 (967)
Q Consensus 740 ~~~p~~~ 746 (967)
..+|-+.
T Consensus 142 ~~~~lf~ 148 (242)
T 3kae_A 142 GKSFLFS 148 (242)
T ss_dssp HHCCCHH
T ss_pred CCccccc
Confidence 9988554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.52 E-value=1.1 Score=45.66 Aligned_cols=60 Identities=18% Similarity=-0.001 Sum_probs=54.8
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 687 LLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 687 ~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
-+++.|+.++|+..++..++.+|.+......+..++.-.|+++.|.+.++.+.+++|+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 356788999999999999999999999999999999999999999999999999999665
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.00 E-value=22 Score=39.54 Aligned_cols=103 Identities=9% Similarity=-0.096 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNY----STS--EHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKA 752 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~----~p~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 752 (967)
.+...++.+|...|++.+|...+...... .+. -.+.+.....++...+++..|...+.++....-
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~--------- 208 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF--------- 208 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhc---------
Confidence 34567899999999999999999887532 111 245677788999999999999999988642100
Q ss_pred HHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc
Q 002100 753 YALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN 814 (967)
Q Consensus 753 ~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 814 (967)
............+...|.++...++|.+|-.+|..+..
T Consensus 209 ------------------------~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 209 ------------------------KNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp ------------------------HSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ------------------------ccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 00001112335677789999999999999999998876
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=89.89 E-value=13 Score=34.79 Aligned_cols=115 Identities=11% Similarity=0.051 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHH
Q 002100 820 AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEA 899 (967)
Q Consensus 820 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~ 899 (967)
.+..+|.+..+.|+.++|+..+.......|-...+-+..-+- +.. ...|..+... .+.--.+...+.
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN-~vp---------~~~d~~~i~~---~~~~~i~~~y~~ 182 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLEN-KVP---------QKRDKENVRQ---TGRRGIEEEYVS 182 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTT-CCC---------CCC--------------CHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhc-CCC---------cccchHHHHh---hhhccchhhhhh
Confidence 566788899999999999999988888777433222111100 000 0000001000 000000000000
Q ss_pred HHH--------HHHHHHHhcCCChH--HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002100 900 EAI--------AELSRAIAFKPDLQ--LLHLRAAFHDSMGDHLHTQRDCEAALCLDPN 947 (967)
Q Consensus 900 eAi--------~~~~kal~~~p~~~--~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~ 947 (967)
..+ ...++-.+.-|... .....|..|+.+|-.++..+.|...-..+|.
T Consensus 183 d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 183 DSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 000 23344455567754 3334677888899999999999998888885
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.36 E-value=13 Score=35.27 Aligned_cols=55 Identities=15% Similarity=0.047 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 677 KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 677 ~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
++...|. +.+..|+++.|.+..+.. ++...|..+|......|+++-|..+|.++-
T Consensus 7 D~~~rF~---LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 7 DPHIRFD---LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp CHHHHHH---HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred ChHHHHH---HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3445553 345789999999987665 456789999999999999999999998865
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.09 E-value=55 Score=39.80 Aligned_cols=218 Identities=13% Similarity=-0.021 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHH-HHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCC-------CCc
Q 002100 714 KLVYEGWILYDTGHREEALAKAEESISIQ-RSFEA-FFLKAYALADSSLNPESSAYVIQLLEEALRCPSD-------GLR 784 (967)
Q Consensus 714 a~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~-~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~-------~~~ 784 (967)
+...+|.++ .|+.++++..+.+.+... .+... .-...+.++-...... ..+..+|...+..... ...
T Consensus 378 A~aSLGlIh--~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~i 453 (963)
T 4ady_A 378 ATASLGVIH--KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVL 453 (963)
T ss_dssp HHHHHHHHT--SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHH
T ss_pred HHHHhhhhc--cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHH
Confidence 344455544 477778888887766421 11111 1122223332222211 2355655555543320 111
Q ss_pred hHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHH--HHHHH
Q 002100 785 KGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT----RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNAS--AYEKR 858 (967)
Q Consensus 785 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~ 858 (967)
...+-..||.+|.-.++ +++.+.+...+..+.. .+-+.+|.++.-.|+.+.....++.+.+...+... +-..+
T Consensus 454 r~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgL 532 (963)
T 4ady_A 454 LHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGL 532 (963)
T ss_dssp HHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 12245577777776665 4566666666653332 25566777777778876666666655543222111 11222
Q ss_pred H--ccCChHHHHHHHHHhhccCCCCchHHH----HHHHHHHhCCCHHHHHH-HHHHHHhcCCChHH--HHHHHHHHHHcC
Q 002100 859 S--EYCDRDMAKSDLSMATQLDPMRTYPYR----YRAAVLMDDHKEAEAIA-ELSRAIAFKPDLQL--LHLRAAFHDSMG 929 (967)
Q Consensus 859 ~--~~~~~~~A~~~l~~al~l~p~~~~~~~----~la~~~~~~g~~~eAi~-~~~kal~~~p~~~~--~~~~a~~~~~~g 929 (967)
| .+|+.+.+....+..... .++...+ .+|..|...|+. .|++ .+..+. .+++..+ .-.+|......|
T Consensus 533 Gll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~-~aIq~LL~~~~-~d~~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 533 ALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNN-SAVKRLLHVAV-SDSNDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCH-HHHHHHHHHHH-HCSCHHHHHHHHHHHHHHTSS
T ss_pred HhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHhc-cCCcHHHHHHHHHHHHhhccC
Confidence 3 236666555555544432 2222222 345566677885 5555 444444 3444321 122333344456
Q ss_pred ChHHHHHHHHH
Q 002100 930 DHLHTQRDCEA 940 (967)
Q Consensus 930 ~~~~A~~~~~~ 940 (967)
+.+.+.+.++.
T Consensus 609 ~~e~v~rlv~~ 619 (963)
T 4ady_A 609 DYTTVPRIVQL 619 (963)
T ss_dssp SCSSHHHHTTT
T ss_pred CHHHHHHHHHH
Confidence 65544444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.97 E-value=6.1 Score=43.35 Aligned_cols=59 Identities=8% Similarity=-0.056 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 681 RFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 681 ~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
...++..+...|++.+|+..++.++..+|-+-..+..+-.+++..|+..+|++.|++.-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567778899999999999999999999999999999999999999999999998764
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.13 E-value=7.7 Score=42.49 Aligned_cols=59 Identities=14% Similarity=-0.020 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
...++..+...|++.+|+..+.+++..+| +..++..+-.++...|+..+|++.|+++-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567788889999999999999999999 888899999999999999999998877643
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.83 E-value=7.5 Score=49.33 Aligned_cols=140 Identities=14% Similarity=0.012 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchHHhhhhhhhhhHh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLD-PSYMMFYGQLHGDNLVE 633 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~ 633 (967)
...+...+...+.++-|.+. +...| ++..-+.+|.+++..|++++|...|+++-.-- .+.....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~---------- 880 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA---------- 880 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCS----------
T ss_pred HHHHHHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhh----------
Confidence 34455667777777766543 23344 56666899999999999999999998864321 1110000
Q ss_pred hhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHh---cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 002100 634 TLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLA---NDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS 710 (967)
Q Consensus 634 ~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~---~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~ 710 (967)
. +........ .....+..|+....++.+.+.++.+++..+.|++..+.
T Consensus 881 ~-----------------------------~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~ 931 (1139)
T 4fhn_B 881 V-----------------------------LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKET 931 (1139)
T ss_dssp S-----------------------------HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCS
T ss_pred h-----------------------------hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC
Confidence 0 111111111 12233456677777888889999999999888876543
Q ss_pred hh-----HHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 711 EH-----EKLVYEGWILYDTGHREEALAKAEES 738 (967)
Q Consensus 711 ~~-----~a~~~lg~~~~~~g~~~eA~~~~~~a 738 (967)
+. ..|.++=..+...|+|++|...+...
T Consensus 932 ~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 932 DDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 32 24566667788889999998777544
|
| >4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL capsid, single-stranded DNA, icosahedral virus; HET: DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB: 1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A 1c8e_A 1c8f_A 1c8g_A | Back alignment and structure |
|---|
Probab=85.48 E-value=0.21 Score=53.99 Aligned_cols=7 Identities=14% Similarity=0.463 Sum_probs=2.9
Q ss_pred hhHhhhh
Q 002100 183 AAWLRFE 189 (967)
Q Consensus 183 ~~w~~~~ 189 (967)
++|-+..
T Consensus 124 ~DWQ~Li 130 (584)
T 4dpv_Z 124 GDWQLIV 130 (584)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.13 E-value=2.6 Score=46.99 Aligned_cols=93 Identities=8% Similarity=-0.011 Sum_probs=70.7
Q ss_pred CCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC----ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCchHHhh
Q 002100 551 TLSYPYKYRAILLVEENKLAAAITEINRIIGFKV----SPDCLELRAWISIALEDYDGALRDVRALLTL--DPSYMMFYG 624 (967)
Q Consensus 551 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~ 624 (967)
.-..++..+|..|.+.|++++|.+.|.++..... ..+.+....++++..+|+..+...+.++-.. ...++....
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 3456889999999999999999999999887544 3678889999999999999999999998765 222233332
Q ss_pred hhhhhhhHhhhHHHhhchhhH
Q 002100 625 QLHGDNLVETLQPLVQQWSQA 645 (967)
Q Consensus 625 ~~~~~~~~~~l~~~~~~~~~A 645 (967)
++. ...|+++...++|..|
T Consensus 209 ~lk--~~~gl~~l~~r~f~~A 227 (429)
T 4b4t_R 209 RYK--TYYGIHCLAVRNFKEA 227 (429)
T ss_dssp HHH--HHHHHGGGGTSCHHHH
T ss_pred HHH--HHHHHHHHHhChHHHH
Confidence 221 3446666677778777
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.92 E-value=1.8 Score=48.75 Aligned_cols=141 Identities=14% Similarity=0.110 Sum_probs=65.1
Q ss_pred HHHHhcCHHHHHHHHHHHHh-----------cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHh
Q 002100 687 LLLRLNSQKAAMRSLRLARN-----------YSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYAL 755 (967)
Q Consensus 687 ~~~~~g~~~~A~~~l~~al~-----------~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~l 755 (967)
.++..+++++|..+-...+. +++=.+..|++++.++...|+..+..........+.|. ++.++..
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~----Ll~~~rt 220 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRST----MMKFLKI 220 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTH----HHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHH----HHHHHHH
Confidence 34567888888876654441 13334567888888888888777665555555544441 1222222
Q ss_pred hhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc---H----HHHHHHHHHH
Q 002100 756 ADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH---T----RAHQGLARVY 828 (967)
Q Consensus 756 a~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~---~----~a~~~la~~~ 828 (967)
+-... +....+..++.+-..|...+.|++|.....++.-+.+ . ..++.+|+++
T Consensus 221 a~lr~--------------------D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~ 280 (523)
T 4b4t_S 221 ASLKH--------------------DNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKIN 280 (523)
T ss_dssp CCSCS--------------------SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHH
T ss_pred Hhccc--------------------CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHH
Confidence 22211 2223445677788899999999999999999976432 1 2677799999
Q ss_pred HHhCCHHHHHHHHHHHHHHccCC
Q 002100 829 HLKNQRKAAYDEMTKLIEKARNN 851 (967)
Q Consensus 829 ~~~g~~~~A~~~~~~al~~~p~~ 851 (967)
..+++|.+|.+.+..|+...|.+
T Consensus 281 a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 281 AIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHhccHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999988753
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.63 E-value=4 Score=46.16 Aligned_cols=67 Identities=13% Similarity=0.019 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchH
Q 002100 680 LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFE 746 (967)
Q Consensus 680 ~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 746 (967)
....+|.+......+..|...|.+|....|++...+..+|.+....|+.-+|+-+|.+++....-++
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~ 220 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP 220 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh
Confidence 3445677777777788888888888888888888888888888888888888888888876554343
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.40 E-value=15 Score=34.87 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=29.3
Q ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHH
Q 002100 787 QALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKA 836 (967)
Q Consensus 787 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~ 836 (967)
..|..+|......|+++-|+.+|.++-..+ .+..+|.-.|+.+.
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~------~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQTQHSFD------KLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCHH------HHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhCCHH------HHHHHHHHhCCHHH
Confidence 578888888888888888888887765432 23334444555443
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=80.60 E-value=6.2 Score=44.64 Aligned_cols=66 Identities=23% Similarity=0.128 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CChHHHHHHHHHHHH
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFK-PDLQLLHLRAAFHDS 927 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~-p~~~~~~~~a~~~~~ 927 (967)
.....|...|.+|..+.|++..++..+|.+....|+.-+|+-+|-+++... |-+.+..++..++.+
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 567888888888888888888888888888888888888888888888654 334566666665543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.27 E-value=2.8 Score=46.75 Aligned_cols=61 Identities=7% Similarity=-0.019 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---chhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYST---SEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 679 ~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p---~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
..+..+|..|.+.|++++|.+.|.++..... +-.+.+.....++...+++..+...+.++.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3556677777777777777777777665432 234555666666666777777777666664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 967 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 9e-17 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 7e-07 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 6e-06 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 7e-06 | |
| d1r29a_ | 122 | d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB | 2e-05 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 2e-05 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 0.002 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 3e-05 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 1e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 7e-04 | |
| d1buoa_ | 121 | d.42.1.1 (A:) Promyelocytic leukaemia zinc finger | 8e-04 | |
| d1uuna_ | 184 | f.6.1.2 (A:) Porin MspA {Mycobacterium smegmatis [ | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.3 bits (199), Expect = 9e-17
Identities = 60/401 (14%), Positives = 103/401 (25%), Gaps = 38/401 (9%)
Query: 560 AILLVEENKLAAAITEINRIIG-FKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPS 618
A + AA ++ + L L + I D + + +P
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 619 YMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKS 678
Y NL + Q + + D + A D +
Sbjct: 66 LAEAY-----SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 679 LLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEES 738
+ + +L + + E K Y I
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNL-LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVF 179
Query: 739 ISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVD 798
+ + A A+ L+P A NLG+V +
Sbjct: 180 NAQGEIWLAIHHFEKAVT---LDPNFL---------------------DAYINLGNVLKE 215
Query: 799 CEKLDLAADCY--MNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYE 856
D A Y +L+ H H LA VY+ + A D + IE + AY
Sbjct: 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC 275
Query: 857 KR----SEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFK 912
E A+ + A +L P A + + EA+ +A+
Sbjct: 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335
Query: 913 PDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTL 952
P+ A+ G + A+ + P D
Sbjct: 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.0 bits (118), Expect = 7e-07
Identities = 31/301 (10%), Positives = 73/301 (24%), Gaps = 25/301 (8%)
Query: 598 ALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSS 657
A E + L +L +P + + + E LQ L + S + +
Sbjct: 41 AGELDESVLELTSQILGANPDFATLW-----NCRREVLQHLETEKSPEESAALVKAELGF 95
Query: 658 VDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVY 717
++ + + + L R + L + H
Sbjct: 96 LESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF------LEADERNFHCWDYR 149
Query: 718 EGWILYDTGHREEALAKAEESISIQ-RSFEAFFLKAYALADSSLNPESSAYVIQLLEEAL 776
E LA + I+ ++ ++ ++ L P+S L
Sbjct: 150 RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL 209
Query: 777 RCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKA 836
+ + + N + + + + + +
Sbjct: 210 KEL-------ELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELE 260
Query: 837 AYDEMTKLIEKARNNASAYEKRSEYCDR----DMAKSDLSMATQLDPMRTYPYRYRAAVL 892
+ E+ +L + + D S +DPMR +
Sbjct: 261 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320
Query: 893 M 893
+
Sbjct: 321 L 321
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.7 bits (99), Expect = 2e-04
Identities = 18/226 (7%), Positives = 42/226 (18%), Gaps = 13/226 (5%)
Query: 695 KAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHR--EEALAKAEESISIQRSFEAFFLKA 752
KA + L + + + W+L L + +
Sbjct: 90 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYR 149
Query: 753 YALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNA 812
+A + + L + + + + +
Sbjct: 150 RFVAAQAAVAPAEE-----LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL- 203
Query: 813 LNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDR----DMAK 868
L + + + + + E E +
Sbjct: 204 -PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC 262
Query: 869 SDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914
+L + L E E + S A P
Sbjct: 263 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (112), Expect = 6e-06
Identities = 24/191 (12%), Positives = 46/191 (24%), Gaps = 16/191 (8%)
Query: 769 IQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVY 828
Q L +A +D + V+ + L D Y L A
Sbjct: 6 AQYLRQAEVLKAD---MTDSKLGPAEVWTSRQALQ---DLYQKMLVTDLEYALDKKVEQD 59
Query: 829 HLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDR--------DMAKSDLSMATQLDPM 880
+ K + K R N + E ++ +L +D
Sbjct: 60 LWNHAFKNQITTLQGQA-KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLP 118
Query: 881 RTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEA 940
+ + + S + ++ L+HL +
Sbjct: 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARY-RNQTSQAESYYRH 177
Query: 941 ALCLDPNHTDT 951
A L P++
Sbjct: 178 AAQLVPSNGQP 188
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (112), Expect = 7e-06
Identities = 25/195 (12%), Positives = 49/195 (25%), Gaps = 16/195 (8%)
Query: 768 VIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLA 825
I L+ + ++ R N + N+ L
Sbjct: 68 QITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLG 127
Query: 826 RVYHLKNQRKAAYDEMTKLIEKARNNA-----SAYEKRSEYCDRDMAKSDLSMATQLDPM 880
+ + + A + + R++ A+S A QL P
Sbjct: 128 IISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQT---SQAESYYRHAAQLVPS 184
Query: 881 RTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEA 940
PY A + I R+IA K A ++ L +
Sbjct: 185 NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF------PAASTNLQKALSKALESRD 238
Query: 941 ALCLDPNHTDTLELY 955
+ +D ++ +
Sbjct: 239 EVKTKWGVSDFIKAF 253
|
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: B-cell lymphoma 6 (Bcl6) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (101), Expect = 2e-05
Identities = 12/98 (12%), Positives = 35/98 (35%), Gaps = 3/98 (3%)
Query: 257 DMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFS 316
D+ + ++ R + + + S F ++ + + I+ E +F
Sbjct: 27 DVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPE--INPEGFNILLDFM 84
Query: 317 RTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLAS 354
T L+ ++ +++ A E + C ++ +
Sbjct: 85 YTSRLN-LREGNIMAVMATAMYLQMEHVVDTCRKFIKA 121
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.2 bits (103), Expect = 2e-05
Identities = 29/187 (15%), Positives = 55/187 (29%), Gaps = 9/187 (4%)
Query: 787 QALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAYDEMTKL 844
Q L G+ K AA CY A+ + A Y Q + A + +
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 845 IEKARNNASAYEKRSEYC----DRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE 900
+E + A+ + D A ++L A L + + + K+
Sbjct: 65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 124
Query: 901 AIAELSRAIAFKPDLQ---LLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDK 957
+ R I + +L + A + + E + +DK
Sbjct: 125 WNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDK 184
Query: 958 ATERVNE 964
++E
Sbjct: 185 YMADMDE 191
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.0 bits (87), Expect = 0.002
Identities = 26/195 (13%), Positives = 55/195 (28%), Gaps = 9/195 (4%)
Query: 713 EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLL 772
++L +G L+ EA A +I+ ++ PE + +
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR-- 62
Query: 773 EEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLARVYHL 830
R + +A LG ++ E D A A ++
Sbjct: 63 ----RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118
Query: 831 KNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAA 890
++K + I + +Y R +R+ + + + +A
Sbjct: 119 IAKKKRWNSIEERRI-HQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQAC 177
Query: 891 VLMDDHKEAEAIAEL 905
+ K + EL
Sbjct: 178 IEAKHDKYMADMDEL 192
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (102), Expect = 3e-05
Identities = 18/139 (12%), Positives = 45/139 (32%), Gaps = 16/139 (11%)
Query: 787 QALNNLGSVYVDCEKLDLAADCYMNALNIKHT--RAHQGLARVYHLKNQRKAAYDEMTKL 844
+ N+G +Y + + A + ++N A+ +Y+ + A ++ +
Sbjct: 37 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEA 96
Query: 845 IEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAE 904
+ + R N K + Q A + + +A +
Sbjct: 97 LIQLRGNQLIDYKI--------------LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ 142
Query: 905 LSRAIAFKPDLQLLHLRAA 923
L+ A + K + + + A
Sbjct: 143 LALATSMKSEPRHSKIDKA 161
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.6 bits (99), Expect = 1e-04
Identities = 37/261 (14%), Positives = 68/261 (26%), Gaps = 64/261 (24%)
Query: 729 EEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQA 788
E L +AE+ F F + + EEA
Sbjct: 5 VELLKRAEKKGVPSSGFMKLFSGSDS---------------YKFEEAADL---------- 39
Query: 789 LNNLGSVYVDCEKLDLAADCYMNALNIKHT--------RAHQGLARVYHLKNQRKAAYDE 840
++Y ++L+LA D ++ A + + + + + A D
Sbjct: 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99
Query: 841 MTK--------------------LIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPM 880
+ L E N+ Y K + + + Q +
Sbjct: 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG---EWYAQDQSVAL 156
Query: 881 RTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAF--------HDSMGDHL 932
+ A + D + EA S+ I +L + D +
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV 216
Query: 933 HTQRDCEAALCLDPNHTDTLE 953
R + DPN D+ E
Sbjct: 217 AAARTLQEGQSEDPNFADSRE 237
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 39.2 bits (90), Expect = 7e-04
Identities = 16/144 (11%), Positives = 43/144 (29%), Gaps = 6/144 (4%)
Query: 824 LARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTY 883
+ + +K + + + I +A Y++ ++ D + + +
Sbjct: 14 VQSAFDIKEEGNEFFKK--NEINEA---IVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 68
Query: 884 PYRYRAAVLMD-DHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAAL 942
A K +++ L+ + G + + A
Sbjct: 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 128
Query: 943 CLDPNHTDTLELYDKATERVNEQQ 966
L+PN+ D Y+ ++ E +
Sbjct: 129 SLNPNNLDIRNSYELCVNKLKEAR 152
|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (88), Expect = 8e-04
Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 8/99 (8%)
Query: 257 DMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFS 316
D+ + + E R +A S+ F + + +++ + +S + + E++
Sbjct: 30 DVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQ-------HYTLDFLSPKTFQQILEYA 82
Query: 317 RTKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLASM 355
T L + +LL A E L+ C L ++
Sbjct: 83 YTATLQ-AKAEDLDDLLYAAEILEIEYLEEQCLKMLETI 120
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 967 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.9 | |
| d1r29a_ | 122 | B-cell lymphoma 6 (Bcl6) protein BTB domain {Human | 99.86 | |
| d1buoa_ | 121 | Promyelocytic leukaemia zinc finger (PLZF) protein | 99.85 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.84 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.83 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.81 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.79 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.76 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.74 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.73 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.69 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.45 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.45 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.41 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.4 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.38 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.37 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.32 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.31 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.29 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.28 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.28 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.27 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.27 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.26 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.25 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.24 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.23 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.22 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.22 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.2 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.18 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.17 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.16 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.12 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.12 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.11 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.1 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.09 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.03 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.92 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.77 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.72 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.68 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.62 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.59 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.54 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.49 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.29 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.2 | |
| d2c9wc1 | 96 | Elongin C {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.8 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.7 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.68 | |
| d1hv2a_ | 99 | Elongin C {Baker's yeast (Saccharomyces cerevisiae | 97.62 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.49 | |
| d1nn7a_ | 105 | Potassium channel kv4.2 {Rat (Rattus norvegicus) [ | 97.15 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.11 | |
| d3kvta_ | 103 | akv3.1 voltage-gated potassium channel {California | 96.77 | |
| d1t1da_ | 100 | Shaker potassium channel {California sea hare (Apl | 96.53 | |
| d1fs1b2 | 61 | Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa | 93.92 | |
| d1nexa2 | 72 | Centromere DNA-binding protein complex Cbf3 subuni | 93.28 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 92.87 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 91.53 | |
| d1fs1b1 | 55 | Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa | 90.12 | |
| d1nexa1 | 70 | Centromere DNA-binding protein complex Cbf3 subuni | 86.72 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-33 Score=314.25 Aligned_cols=375 Identities=16% Similarity=0.125 Sum_probs=335.6
Q ss_pred chhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc
Q 002100 522 VGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE 600 (967)
Q Consensus 522 ~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g 600 (967)
.|..+...+.| ++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+| ++.++..+|.+|..+|
T Consensus 5 la~~~~~~G~~---~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 5 LAHREYQAGDF---EAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc
Confidence 35556666655 9999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHH
Q 002100 601 DYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLL 680 (967)
Q Consensus 601 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~ 680 (967)
++++|+..+..++..+|...... ............+..+ ...........+.....
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~ 137 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDGY------INLAAALVAAGDMEGA------------------VQAYVSALQYNPDLYCV 137 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHHSCSSHH------------------HHHHHHHHHHCTTCTHH
T ss_pred ccccccccccccccccccccccc------cccccccccccccccc------------------ccccccccccccccccc
Confidence 99999999999999999988777 3444445554444444 55666666777778888
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCC
Q 002100 681 RFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSL 760 (967)
Q Consensus 681 ~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~ 760 (967)
...........+....+...+.+.+...|++..++..+|..+...|++++|...++++++++|++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-------------- 203 (388)
T d1w3ba_ 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL-------------- 203 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH--------------
T ss_pred cccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccH--------------
Confidence 888888999999999999999999999999999999999999999999999999999999999666
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHH
Q 002100 761 NPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAY 838 (967)
Q Consensus 761 ~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~ 838 (967)
.++..+|.++...|++++|+..|++++.. .....+..+|.++...|++++|+
T Consensus 204 --------------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 257 (388)
T d1w3ba_ 204 --------------------------DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 257 (388)
T ss_dssp --------------------------HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------HHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHH
Confidence 78899999999999999999999999884 44568889999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 839 DEMTKLIEKARNNASAYEKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 839 ~~~~~al~~~p~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
..|+++++.+|+++.++..++.. +++++|+..|++++...|.+...+..+|.++...|++++|+..|+++++.+|+
T Consensus 258 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 337 (388)
T d1w3ba_ 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337 (388)
T ss_dssp HHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998853 99999999999999999999999999999999999999999999999999998
Q ss_pred -hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 002100 915 -LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 915 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
..++..+|.+|..+|++++|+..|++|++++|++++++..+.++..+++
T Consensus 338 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4589999999999999999999999999999999999888887766554
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-33 Score=314.91 Aligned_cols=376 Identities=17% Similarity=0.131 Sum_probs=338.6
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhCch--hHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHH
Q 002100 461 HQLGVVMLEREEYKDAQNWFKAAVEAGHI--YSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEK 538 (967)
Q Consensus 461 ~~lG~~~~~~g~y~~A~~~f~~al~~~~~--~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A 538 (967)
+.+|..+++.|+|++|+..|+++++.+|. .++..+|.++.. .++| ++|
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---------------------------~~~~---~~A 52 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ---------------------------CRRL---DRS 52 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---------------------------TTCH---HHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------------------------cCCH---HHH
Confidence 46889999999999999999999999874 455555555544 4434 899
Q ss_pred HHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 002100 539 MMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDP 617 (967)
Q Consensus 539 ~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 617 (967)
+..|+++++++|+++.++..+|.++..+|++++|+..+.+++..+| ........+......+.+..+...........+
T Consensus 53 ~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (388)
T d1w3ba_ 53 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999 888899999999999999999999998888888
Q ss_pred CchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHH
Q 002100 618 SYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAA 697 (967)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A 697 (967)
...... ...............+ ...+.+.+...|..+..+..+|..+...+++++|
T Consensus 133 ~~~~~~------~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 188 (388)
T d1w3ba_ 133 DLYCVR------SDLGNLLKALGRLEEA------------------KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp TCTHHH------HHHHHHHHTTSCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred cccccc------ccccccccccchhhhh------------------HHHHHHhhccCcchhHHHHhhcccccccCcHHHH
Confidence 777666 3334444444444444 7788889999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhc
Q 002100 698 MRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALR 777 (967)
Q Consensus 698 ~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~ 777 (967)
...++++++.+|++..++..+|.++...|++++|+..+++++..+|...
T Consensus 189 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------------------------- 237 (388)
T d1w3ba_ 189 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA------------------------------- 237 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH-------------------------------
T ss_pred HHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHH-------------------------------
Confidence 9999999999999999999999999999999999999999998888555
Q ss_pred CCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHH
Q 002100 778 CPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI--KHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAY 855 (967)
Q Consensus 778 ~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 855 (967)
..+..+|.++...|++++|+..|+++++. +...++..+|.++..+|++++|++.+++++...|.+...+
T Consensus 238 ---------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 308 (388)
T d1w3ba_ 238 ---------VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308 (388)
T ss_dssp ---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhh
Confidence 78889999999999999999999999985 4556999999999999999999999999999999999999
Q ss_pred HHHHcc----CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCC
Q 002100 856 EKRSEY----CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGD 930 (967)
Q Consensus 856 ~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~ 930 (967)
..++.. |++++|+..|+++++++|+++.++.++|.+|...|++++|+..|+++++++|+ ..++.++|.+|.++||
T Consensus 309 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999843 99999999999999999999999999999999999999999999999999999 5699999999999987
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.5e-23 Score=227.03 Aligned_cols=242 Identities=14% Similarity=0.056 Sum_probs=176.2
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhH
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLV 632 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 632 (967)
...+.+|..++..|++++|+..|+++++.+| ++.++..+|.++..+|++++|+..|.++++++|++...+ ..+
T Consensus 20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~------~~l 93 (323)
T d1fcha_ 20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL------MAL 93 (323)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccc------ccc
Confidence 3345566666666666666666666666666 566666666666666666666666666666666666555 455
Q ss_pred hhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHH---------------HHHHHHHHHhcCHHHH
Q 002100 633 ETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLR---------------FRQSLLLLRLNSQKAA 697 (967)
Q Consensus 633 ~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~---------------~~~g~~~~~~g~~~~A 697 (967)
+.++...+++++| +..+.+++..+|...... ......+...+.+.+|
T Consensus 94 a~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (323)
T d1fcha_ 94 AVSFTNESLQRQA------------------CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEV 155 (323)
T ss_dssp HHHHHHTTCHHHH------------------HHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHH
T ss_pred ccccccccccccc------------------ccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHH
Confidence 5566666666665 555555555555433221 1122334566788999
Q ss_pred HHHHHHHHhcCCch--hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHH
Q 002100 698 MRSLRLARNYSTSE--HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEA 775 (967)
Q Consensus 698 ~~~l~~al~~~p~~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~ 775 (967)
+..|+++++.+|+. +.++..+|.++...|++++|+..|++++..+|++.
T Consensus 156 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------------- 206 (323)
T d1fcha_ 156 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY----------------------------- 206 (323)
T ss_dssp HHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------------------------
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccc-----------------------------
Confidence 99999999998874 56788899999999999999999999999999666
Q ss_pred hcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHH
Q 002100 776 LRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNAS 853 (967)
Q Consensus 776 ~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 853 (967)
.+|.++|.+|...|++++|+.+|+++++ ++...++..+|.+|..+|++++|+..|+++++++|++..
T Consensus 207 -----------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 275 (323)
T d1fcha_ 207 -----------LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 275 (323)
T ss_dssp -----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred -----------cchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChh
Confidence 7899999999999999999999999998 455669999999999999999999999999999998766
Q ss_pred HHHHHH
Q 002100 854 AYEKRS 859 (967)
Q Consensus 854 ~~~~~~ 859 (967)
++...+
T Consensus 276 ~~~~~~ 281 (323)
T d1fcha_ 276 PRGEGG 281 (323)
T ss_dssp ----CC
T ss_pred hhhhhH
Confidence 554433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.6e-22 Score=218.78 Aligned_cols=256 Identities=15% Similarity=0.124 Sum_probs=211.7
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALED 601 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~ 601 (967)
|..+...+.| ++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++| +...+..+|.+|...|+
T Consensus 26 g~~~~~~g~~---~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 26 GLRRLQEGDL---PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHTTCH---HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence 5555666655 9999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCchHHhhhhhhh---------hhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHh
Q 002100 602 YDGALRDVRALLTLDPSYMMFYGQLHGD---------NLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLA 672 (967)
Q Consensus 602 ~~~A~~~~~~al~l~p~~~~~~~~~~~~---------~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~ 672 (967)
+++|++.+++++..+|+........... ..........+.+.+ ++..+.++++
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------a~~~~~~al~ 164 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE------------------VKELFLAAVR 164 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHH------------------HHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHH------------------HHHHHHHHHH
Confidence 9999999999999999876544211000 000001112222333 4888999999
Q ss_pred cCCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Q 002100 673 NDPGK--SLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFL 750 (967)
Q Consensus 673 ~~p~~--~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 750 (967)
.+|.. +.++..+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|+++++++|++.
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---- 240 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI---- 240 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH----
Confidence 99874 567889999999999999999999999999999999999999999999999999999999999999766
Q ss_pred HHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH------------
Q 002100 751 KAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT------------ 818 (967)
Q Consensus 751 ~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~------------ 818 (967)
.+++++|.+|...|++++|+..|++|++++|.
T Consensus 241 ------------------------------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 284 (323)
T d1fcha_ 241 ------------------------------------RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 284 (323)
T ss_dssp ------------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred ------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHH
Confidence 79999999999999999999999999984432
Q ss_pred -HHHHHHHHHHHHhCCHHHHHH
Q 002100 819 -RAHQGLARVYHLKNQRKAAYD 839 (967)
Q Consensus 819 -~a~~~la~~~~~~g~~~~A~~ 839 (967)
.++..++.++..+++.+.+..
T Consensus 285 ~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 285 ENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHH
Confidence 134556666666666554433
|
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: B-cell lymphoma 6 (Bcl6) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.1e-22 Score=186.24 Aligned_cols=113 Identities=12% Similarity=0.179 Sum_probs=103.5
Q ss_pred ccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 239 RDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
..++...+.+++.++.+|||+|+|+|++|+|||+||+++|+||++||.+++.|+....+.+++ +++++|+.+++|+||
T Consensus 9 ~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~--v~~~~f~~ll~~~Yt 86 (122)
T d1r29a_ 9 ASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPE--INPEGFNILLDFMYT 86 (122)
T ss_dssp HHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTT--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecc--cCHHHHHHHHhhhcC
Confidence 344556667778889999999999999999999999999999999999999998877777765 999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHh
Q 002100 319 KMLDSFDPRLVLELLSFANRFCCEELKSACDSYLAS 354 (967)
Q Consensus 319 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~ 354 (967)
|++ .++.+++.+++.+|++|+++.|++.|+++|.+
T Consensus 87 g~~-~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~~ 121 (122)
T d1r29a_ 87 SRL-NLREGNIMAVMATAMYLQMEHVVDTCRKFIKA 121 (122)
T ss_dssp SCC-CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred Cee-cCchhhHHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence 999 89999999999999999999999999999975
|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.1e-22 Score=183.19 Aligned_cols=109 Identities=16% Similarity=0.194 Sum_probs=99.4
Q ss_pred cccccccccccccCCCCcccEEEEEcCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHc
Q 002100 238 FRDDISMEDEECSTSDEDWDMSFCIGNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSR 317 (967)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~Dv~~~v~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y 317 (967)
+.+.+...+.+++.++.+|||+|.|+|++|+|||+|||++|+||++||.++ ..+|++++ +++++|+.+|+|+|
T Consensus 11 h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~-----~~~i~~~~--v~~~~f~~ll~~~Y 83 (121)
T d1buoa_ 11 HPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDF--LSPKTFQQILEYAY 83 (121)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECS--SCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCc-----cceeecCC--CCHHHHHHHHHheE
Confidence 455556667778888999999999999999999999999999999999765 34699976 99999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhchhChHHHHHHHHHHHHh
Q 002100 318 TKMLDSFDPRLVLELLSFANRFCCEELKSACDSYLAS 354 (967)
Q Consensus 318 t~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~ 354 (967)
||++ .++.+++.+++.+|++|+++.|++.|+++|.+
T Consensus 84 tg~i-~l~~~~v~~ll~~A~~l~~~~L~~~C~~~L~~ 119 (121)
T d1buoa_ 84 TATL-QAKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119 (121)
T ss_dssp HSCC-CCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccc-CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9999 89999999999999999999999999999965
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2.3e-20 Score=202.34 Aligned_cols=237 Identities=14% Similarity=0.146 Sum_probs=201.7
Q ss_pred hHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCchHH
Q 002100 545 ATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE-DYDGALRDVRALLTLDPSYMMF 622 (967)
Q Consensus 545 al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~l~p~~~~~ 622 (967)
+|..+|+...++.++|.++.+.+++++|++.++++|+++| +..+|..+|.++..+| ++++|+..++++++++|++..+
T Consensus 35 ~I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a 114 (315)
T d2h6fa1 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 114 (315)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhH
Confidence 3556778888999999999999999999999999999999 8999999999999987 5999999999999999999999
Q ss_pred hhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHH
Q 002100 623 YGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLR 702 (967)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~ 702 (967)
+ ..++.++..++++++| +..+.++++.+|.+..+|..+|.++...+++++|+..++
T Consensus 115 ~------~~~~~~~~~l~~~~eA------------------l~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~ 170 (315)
T d2h6fa1 115 W------HHRRVLVEWLRDPSQE------------------LEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVD 170 (315)
T ss_dssp H------HHHHHHHHHHTCCTTH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred H------HHHhHHHHhhccHHHH------------------HHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9 7889999999999999 999999999999999999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHHHHHHcCC------hHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHh
Q 002100 703 LARNYSTSEHEKLVYEGWILYDTGH------REEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEAL 776 (967)
Q Consensus 703 ~al~~~p~~~~a~~~lg~~~~~~g~------~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~ 776 (967)
++++++|++..+|.++|.++...+. +++|+..+.++++++|++.
T Consensus 171 ~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~------------------------------ 220 (315)
T d2h6fa1 171 QLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE------------------------------ 220 (315)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCH------------------------------
T ss_pred HHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCch------------------------------
Confidence 9999999999999999999988776 5789999999999999777
Q ss_pred cCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc----HHHHHHHHHHHHHh--CCHHHHHHHHHHHHH
Q 002100 777 RCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH----TRAHQGLARVYHLK--NQRKAAYDEMTKLIE 846 (967)
Q Consensus 777 ~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~----~~a~~~la~~~~~~--g~~~~A~~~~~~al~ 846 (967)
.+|+++|.++...+ .+++...++++++..+ ..++..++.+|... ++.+.+...++++++
T Consensus 221 ----------~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~ 285 (315)
T d2h6fa1 221 ----------SAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 285 (315)
T ss_dssp ----------HHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 78888888865544 6788888888877333 23555666665432 344444444444443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=5.2e-20 Score=199.41 Aligned_cols=232 Identities=13% Similarity=0.044 Sum_probs=202.1
Q ss_pred HhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcccchHHHH
Q 002100 671 LANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGH-REEALAKAEESISIQRSFEAFF 749 (967)
Q Consensus 671 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~-~~eA~~~~~~al~~~p~~~~~~ 749 (967)
+..+|+...++..+|.++.+.+.+++|+..++++++++|++..+|.++|.++...|+ +++|+..++++++++|++.
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~--- 112 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY--- 112 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH---
T ss_pred cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhh---
Confidence 445677788888999999999999999999999999999999999999999999875 8999999999999999777
Q ss_pred HHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--HHHHHHHHHH
Q 002100 750 LKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH--TRAHQGLARV 827 (967)
Q Consensus 750 ~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~a~~~la~~ 827 (967)
.+|+++|.++..+|++++|+.+|+++++.+| ..+|.++|.+
T Consensus 113 -------------------------------------~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~ 155 (315)
T d2h6fa1 113 -------------------------------------QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV 155 (315)
T ss_dssp -------------------------------------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -------------------------------------hHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHH
Confidence 8999999999999999999999999999654 4599999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHcc----------CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCC
Q 002100 828 YHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEY----------CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHK 897 (967)
Q Consensus 828 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----------~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~ 897 (967)
+...|++++|++.++++++.+|++..+|..++.. +.+++|+..+.++++++|++..+|.+++.++... .
T Consensus 156 ~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~ 234 (315)
T d2h6fa1 156 IQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-G 234 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-C
T ss_pred HHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-C
Confidence 9999999999999999999999999999998832 3368999999999999999999999999886654 4
Q ss_pred HHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHc--CChHHHHHHHHHHHh
Q 002100 898 EAEAIAELSRAIAFKPDL---QLLHLRAAFHDSM--GDHLHTQRDCEAALC 943 (967)
Q Consensus 898 ~~eAi~~~~kal~~~p~~---~~~~~~a~~~~~~--g~~~~A~~~~~~al~ 943 (967)
..++...+++++++.|+. .++..++.+|... ++.+.+...++++++
T Consensus 235 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~ 285 (315)
T d2h6fa1 235 LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 285 (315)
T ss_dssp GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 688999999999999873 3566677776543 555555555555544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=2.5e-20 Score=204.29 Aligned_cols=228 Identities=8% Similarity=-0.125 Sum_probs=174.1
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCch
Q 002100 688 LLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGH--REEALAKAEESISIQRSFEAFFLKAYALADSSLNPESS 765 (967)
Q Consensus 688 ~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~--~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~ 765 (967)
+...+++++|+..++++++.+|++..+++.+|+++...++ +++|+..++++++++|...
T Consensus 83 ~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~------------------- 143 (334)
T d1dcea1 83 EESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF------------------- 143 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhh-------------------
Confidence 3445566677777777777777777777777777666554 6677777777777766443
Q ss_pred HHHHHHHHHHhcCCCCCCchHHH-HHHhHHHHHhcccHHHHHHHHHHHhccCc--HHHHHHHHHHHHHhCCHHHHHHHHH
Q 002100 766 AYVIQLLEEALRCPSDGLRKGQA-LNNLGSVYVDCEKLDLAADCYMNALNIKH--TRAHQGLARVYHLKNQRKAAYDEMT 842 (967)
Q Consensus 766 ~~a~~~le~~~~~~~~~~~~~~a-~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~ 842 (967)
.+ +..+|.++...+++++|+.+++++++.+| ..++..+|.++..+|++++|...++
T Consensus 144 ---------------------~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~ 202 (334)
T d1dcea1 144 ---------------------HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (334)
T ss_dssp ---------------------HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred ---------------------hhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 23 34556667777777777777777777444 3467777777777777777777777
Q ss_pred HHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHH
Q 002100 843 KLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLR 921 (967)
Q Consensus 843 ~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~ 921 (967)
++++..|.....+......+..+++...+.+++..+|.....+..++.++...+++.+|+..+.++++.+|+ ..++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 282 (334)
T d1dcea1 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 282 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHH
Confidence 777777766666655555567778889999999999999999999999999999999999999999999988 4588999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 002100 922 AAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELY 955 (967)
Q Consensus 922 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~ 955 (967)
|.++..+|++++|+.+|+++++++|.+...+..+
T Consensus 283 ~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 283 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp HHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 9999999999999999999999999888776543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=8.8e-20 Score=199.82 Aligned_cols=257 Identities=11% Similarity=-0.010 Sum_probs=197.4
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhc----------CcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcC--H
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEE----------NKLAAAITEINRIIGFKV-SPDCLELRAWISIALED--Y 602 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~--~ 602 (967)
++|+..++++++++|++..+|..++.++... +++++|+..+++++..+| ++.++..+|.++...++ +
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~ 125 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccH
Confidence 8899999999999999999998888776544 347888888888888888 78888888888777664 7
Q ss_pred HHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHH
Q 002100 603 DGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRF 682 (967)
Q Consensus 603 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~ 682 (967)
++|+..++++++.+|.+..++. ...+.++...+.+++| +..+.++++.+|.+..++.
T Consensus 126 ~~a~~~~~~al~~~~~~~~~~~-----~~~~~~~~~~~~~~~A------------------l~~~~~~i~~~p~~~~a~~ 182 (334)
T d1dcea1 126 ARELELCARFLEADERNFHCWD-----YRRFVAAQAAVAPAEE------------------LAFTDSLITRNFSNYSSWH 182 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHH-----HHHHHHHHTCCCHHHH------------------HHHHHTTTTTTCCCHHHHH
T ss_pred HHHHHHHHHHHhhCchhhhhhh-----hHHHHHHHhccccHHH------------------HHHHHHHHHcCCCCHHHHH
Confidence 8888888888888888777652 3456666666777777 7777888888888888888
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCC
Q 002100 683 RQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNP 762 (967)
Q Consensus 683 ~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~ 762 (967)
.+|.++..+|++++|+..++++++..|...+.+. .+...+..+++...+.+++..+|...
T Consensus 183 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~a~~~~~~~l~~~~~~~---------------- 242 (334)
T d1dcea1 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAEPL---------------- 242 (334)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHH----HHHHHCSSCSHHHHHHHHHHSCCCCS----------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHH----HHHHhcchhHHHHHHHHHHHhCcchh----------------
Confidence 8888888888888887777777777666544332 34455667777777777777776443
Q ss_pred CchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhCCHHHHHHH
Q 002100 763 ESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTR--AHQGLARVYHLKNQRKAAYDE 840 (967)
Q Consensus 763 ~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~--a~~~la~~~~~~g~~~~A~~~ 840 (967)
.++..+|.++...+++.+|+..|.++++.++.. ++..+|.++..+|++++|++.
T Consensus 243 ------------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~ 298 (334)
T d1dcea1 243 ------------------------FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY 298 (334)
T ss_dssp ------------------------SSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH
T ss_pred ------------------------hHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 455667788888888888888888888876654 788888888888888888888
Q ss_pred HHHHHHHccCCHHHHHHHH
Q 002100 841 MTKLIEKARNNASAYEKRS 859 (967)
Q Consensus 841 ~~~al~~~p~~~~~~~~~~ 859 (967)
|+++++++|..+..|..++
T Consensus 299 ~~~ai~ldP~~~~y~~~L~ 317 (334)
T d1dcea1 299 FSTLKAVDPMRAAYLDDLR 317 (334)
T ss_dssp HHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHCcccHHHHHHHH
Confidence 8888888887766666554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1.5e-17 Score=174.17 Aligned_cols=211 Identities=15% Similarity=0.065 Sum_probs=138.9
Q ss_pred HHHHHHHHhcC----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 664 LAVVHHMLAND----PGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 664 l~~~~~~l~~~----p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
+..+.+++... |..+.+++.+|.+|.+.|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|++++
T Consensus 19 l~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 98 (259)
T d1xnfa_ 19 LARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 98 (259)
T ss_dssp HHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHH
Confidence 66666776643 33456788888888888888888888888888888888888888888888888888888888888
Q ss_pred hcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH-
Q 002100 740 SIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT- 818 (967)
Q Consensus 740 ~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~- 818 (967)
+++|++. .++.++|.+|..+|++++|+..|+++++.++.
T Consensus 99 ~~~p~~~----------------------------------------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 138 (259)
T d1xnfa_ 99 ELDPTYN----------------------------------------YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 138 (259)
T ss_dssp HHCTTCT----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhhhh----------------------------------------hhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc
Confidence 8888655 67888888888888888888888888885443
Q ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHH---HHHHHcc---CChHHHHHHHHHhhccCCCCchHHHHHHHH
Q 002100 819 -RAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASA---YEKRSEY---CDRDMAKSDLSMATQLDPMRTYPYRYRAAV 891 (967)
Q Consensus 819 -~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~---~~~~~A~~~l~~al~l~p~~~~~~~~la~~ 891 (967)
.....++..+...+..+.+...........+..... ....+.. +..+.+...+..+....|....+++++|.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 218 (259)
T d1xnfa_ 139 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY 218 (259)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHH
Confidence 455666666666666555544444444433322111 1111111 223333444444444445555555555555
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCC
Q 002100 892 LMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 892 ~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
|...|++++|+..|+++++.+|+
T Consensus 219 ~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 219 YLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCT
T ss_pred HHHCCCHHHHHHHHHHHHHcCCC
Confidence 55555555555555555555555
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=6e-17 Score=176.80 Aligned_cols=288 Identities=11% Similarity=-0.047 Sum_probs=227.5
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C-----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhh
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S-----PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQ 625 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 625 (967)
.+.....+|.+++..|++++|++.+++++...| + ..++..+|.+|..+|++++|+..|++++++.|........
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 456677789999999999999999999999988 3 3478889999999999999999999999886655444333
Q ss_pred hhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcC--------CCChHHHHHHHHHHHHhcCHHHH
Q 002100 626 LHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAND--------PGKSLLRFRQSLLLLRLNSQKAA 697 (967)
Q Consensus 626 ~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~--------p~~~~~~~~~g~~~~~~g~~~~A 697 (967)
......++.++...+++..+ +..+.+++... +.....+..+|.++...|+++.|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a------------------~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a 152 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTA------------------WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 152 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhh
Confidence 33446777888888888888 66666665432 12234667889999999999999
Q ss_pred HHHHHHHHhcCCch-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHH
Q 002100 698 MRSLRLARNYSTSE-----HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLL 772 (967)
Q Consensus 698 ~~~l~~al~~~p~~-----~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~l 772 (967)
...+++++...+.. ..++...+..+...+++.++...+.++....+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-------------------------- 206 (366)
T d1hz4a_ 153 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK-------------------------- 206 (366)
T ss_dssp HHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC--------------------------
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 99999999876542 45677889999999999999999999886554211
Q ss_pred HHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcH------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002100 773 EEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHT------RAHQGLARVYHLKNQRKAAYDEMTKLIE 846 (967)
Q Consensus 773 e~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~------~a~~~la~~~~~~g~~~~A~~~~~~al~ 846 (967)
...+....++..++.++...+++++|...+++++...+. ..+..+|.++...|++++|...+++++.
T Consensus 207 -------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 279 (366)
T d1hz4a_ 207 -------YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 279 (366)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------ccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 011123356778899999999999999999999984322 3677899999999999999999999886
Q ss_pred HccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002100 847 KARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD 914 (967)
Q Consensus 847 ~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~ 914 (967)
... .....|....++..+|.+|...|++++|++.+++++++.+.
T Consensus 280 ~~~------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 280 NAR------------------------SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 323 (366)
T ss_dssp HHH------------------------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHh------------------------hcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 433 23445666778899999999999999999999999987543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=2.5e-17 Score=172.51 Aligned_cols=149 Identities=12% Similarity=0.075 Sum_probs=89.3
Q ss_pred HHHHHHHHHhHhhC----CCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHH
Q 002100 536 KEKMMDLNTATELD----PTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVR 610 (967)
Q Consensus 536 ~~A~~~~~~al~l~----P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~ 610 (967)
+.|+..+++++... |+.+.+++.+|.+|...|++++|+..|++++.++| ++.+++.+|.+|..+|++++|+..|+
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 95 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence 55555666665432 23345666666666666666666666666666666 66666666666666666666666666
Q ss_pred HHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 002100 611 ALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR 690 (967)
Q Consensus 611 ~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~ 690 (967)
++++++|++..++ ..++.++...+++++| +..+.++++.+|.+......++..+..
T Consensus 96 ~al~~~p~~~~a~------~~lg~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~~~~~~~~ 151 (259)
T d1xnfa_ 96 SVLELDPTYNYAH------LNRGIALYYGGRDKLA------------------QDDLLAFYQDDPNDPFRSLWLYLAEQK 151 (259)
T ss_dssp HHHHHCTTCTHHH------HHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhH------HHHHHHHHHHhhHHHH------------------HHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 6666666666665 4555666666666655 556666666666555555555555555
Q ss_pred hcCHHHHHHHHHHHHhcC
Q 002100 691 LNSQKAAMRSLRLARNYS 708 (967)
Q Consensus 691 ~g~~~~A~~~l~~al~~~ 708 (967)
.+..+.+...........
T Consensus 152 ~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 152 LDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HCHHHHHHHHHHHHHHSC
T ss_pred hhhHHHHHHHHHHhhccc
Confidence 554444444433333333
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=2.8e-15 Score=163.32 Aligned_cols=278 Identities=15% Similarity=0.048 Sum_probs=218.6
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchH
Q 002100 585 SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSL 664 (967)
Q Consensus 585 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al 664 (967)
.++....+|.++...|++++|+..++++++..|++.....
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~---------------------------------------- 50 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSR---------------------------------------- 50 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHH----------------------------------------
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHH----------------------------------------
Confidence 4667888899999999999999999999999887543320
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------hhHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 665 AVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTS------EHEKLVYEGWILYDTGHREEALAKAEES 738 (967)
Q Consensus 665 ~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~~~~a 738 (967)
..++..+|.++...|++++|+..|+++++..+. ...++..++.++...|++..|...+.++
T Consensus 51 -------------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 117 (366)
T d1hz4a_ 51 -------------IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 117 (366)
T ss_dssp -------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123455677888888888888888888775433 2456778899999999999999999999
Q ss_pred HhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--
Q 002100 739 ISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK-- 816 (967)
Q Consensus 739 l~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~-- 816 (967)
+.+.+... ....+.....+..+|.++...|+++.|...|.+++...
T Consensus 118 l~~~~~~~--------------------------------~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (366)
T d1hz4a_ 118 FQLINEQH--------------------------------LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 165 (366)
T ss_dssp HHHHHHTT--------------------------------CTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHhHhcc--------------------------------cchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh
Confidence 87655211 11122334577889999999999999999999998722
Q ss_pred -----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC-------CHHHHHHHHc----cCChHHHHHHHHHhhccCCC
Q 002100 817 -----HTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARN-------NASAYEKRSE----YCDRDMAKSDLSMATQLDPM 880 (967)
Q Consensus 817 -----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~ 880 (967)
...++..++..+...+++.++...+.++....+. ...++...+. .+++++|...+++++...|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 245 (366)
T d1hz4a_ 166 YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 245 (366)
T ss_dssp SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT
T ss_pred hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccc
Confidence 2237888999999999999999999999887653 2234444443 28999999999999998876
Q ss_pred Cc----hHHHHHHHHHHhCCCHHHHHHHHHHHHhcC------CC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002100 881 RT----YPYRYRAAVLMDDHKEAEAIAELSRAIAFK------PD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPN 947 (967)
Q Consensus 881 ~~----~~~~~la~~~~~~g~~~eAi~~~~kal~~~------p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~ 947 (967)
+. ..+.++|.++...|++++|+..+++++... |. ..++..+|.+|..+|++++|++.+++|+++.+.
T Consensus 246 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 246 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 323 (366)
T ss_dssp TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 54 356678999999999999999999998542 22 238889999999999999999999999988654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=5e-15 Score=170.29 Aligned_cols=227 Identities=11% Similarity=0.032 Sum_probs=151.3
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
-+|++.|++|++++|+.+.+++++|.++..++++++| |+++|..+| ....+...+.+. ...|..+++.+++..+
T Consensus 3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcc
Confidence 4788999999999999999999999999999999877 888998888 444443322222 3346678888888776
Q ss_pred hCCC--chHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc
Q 002100 615 LDPS--YMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLN 692 (967)
Q Consensus 615 l~p~--~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g 692 (967)
.... ..... ....+.++...+.|+.+ +..+.+.+..+|.+...+..+|..+...+
T Consensus 78 ~~~~~~~~~~~-----~~~~~~l~~a~~~Y~~a------------------i~~l~~~~~l~~~~~~~~~~lg~~~~~~~ 134 (497)
T d1ya0a1 78 NRANPNRSEVQ-----ANLSLFLEAASGFYTQL------------------LQELCTVFNVDLPCRVKSSQLGIISNKQT 134 (497)
T ss_dssp CSSCTTTTHHH-----HHHHHHHHHHHHHHHHH------------------HHHHTC-----------------------
T ss_pred cccCccHHHHH-----HHHHHHHHHHHHHHHHH------------------HHHHHHHHCCChhhHHHHHHhHHHHHhCC
Confidence 5432 22222 13445666677777777 78888888888998899999999999999
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHH
Q 002100 693 SQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLL 772 (967)
Q Consensus 693 ~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~l 772 (967)
++++|+..+++++..+|. .++.++|.++...|++++|+.+|++|++++|++.
T Consensus 135 ~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~-------------------------- 186 (497)
T d1ya0a1 135 HTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG-------------------------- 186 (497)
T ss_dssp --------CCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS--------------------------
T ss_pred CHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch--------------------------
Confidence 999999999988877664 5788899999999999999999999999999665
Q ss_pred HHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhC
Q 002100 773 EEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK--HTRAHQGLARVYHLKN 832 (967)
Q Consensus 773 e~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~--~~~a~~~la~~~~~~g 832 (967)
.+|+++|.++...|++.+|+.+|.+|+..+ .+.++.+|+.++.+..
T Consensus 187 --------------~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 187 --------------QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp --------------HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 789999999999999999999999999854 4458888888876544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=5.1e-14 Score=161.75 Aligned_cols=219 Identities=13% Similarity=0.032 Sum_probs=146.6
Q ss_pred HHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHH
Q 002100 571 AAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWM 649 (967)
Q Consensus 571 ~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~ 649 (967)
+|++.|++|+.++| .++++..+|.++..++++++| |++++..+|+....+. ....+. ...|..+
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~------~e~~Lw--~~~y~~~---- 68 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKK------VEQDLW--NHAFKNQ---- 68 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHT------HHHHHH--HHHTHHH----
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHh------HHHHHH--HHHHHHH----
Confidence 78999999999999 789999999999999999987 8999999998766651 111111 0112233
Q ss_pred HHHhhhccccccchHHHHHHHHhcCC--CChH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcC
Q 002100 650 QLYDRWSSVDDIGSLAVVHHMLANDP--GKSL-LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTG 726 (967)
Q Consensus 650 ~l~~~~~~~d~~~al~~~~~~l~~~p--~~~~-~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g 726 (967)
+..+++..+... .... ....++.+....+.|+.|+..+++++..+|++...+..+|.++...|
T Consensus 69 --------------ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~ 134 (497)
T d1ya0a1 69 --------------ITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQT 134 (497)
T ss_dssp --------------HHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------
T ss_pred --------------HHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCC
Confidence 666776665442 2222 22335666777888999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHH
Q 002100 727 HREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAA 806 (967)
Q Consensus 727 ~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~ 806 (967)
++++|+..+++++..++. .++.++|.++...+++++|+
T Consensus 135 ~~~~A~~~~~~al~~~~~------------------------------------------~~~~~LG~l~~~~~~~~~A~ 172 (497)
T d1ya0a1 135 HTSAIVKPQSSSCSYICQ------------------------------------------HCLVHLGDIARYRNQTSQAE 172 (497)
T ss_dssp --------CCHHHHHHHH------------------------------------------HHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHhCCCHH------------------------------------------HHHHHHHHHHHHcccHHHHH
Confidence 999999999998866651 46788999999999999999
Q ss_pred HHHHHHhccCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHc
Q 002100 807 DCYMNALNIKH--TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSE 860 (967)
Q Consensus 807 ~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 860 (967)
.+|++|++++| ..++..||.++...|++.+|+.+|.+++...|..+.++.+++.
T Consensus 173 ~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~ 228 (497)
T d1ya0a1 173 SYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 99999998544 4599999999999999999999999999999998888888773
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=6.5e-13 Score=141.13 Aligned_cols=224 Identities=16% Similarity=0.113 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Q 002100 680 LRFRQSLLLLRLNSQKAAMRSLRLARNYS------TSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAY 753 (967)
Q Consensus 680 ~~~~~g~~~~~~g~~~~A~~~l~~al~~~------p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 753 (967)
.|...|.+|...+++++|+..|+++++.. +.....+..+|.+|..+|++++|+..|++++++.+...
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~------- 111 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG------- 111 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc-------
Confidence 45566889999999999999999999863 33456789999999999999999999999998776332
Q ss_pred HhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHh-cccHHHHHHHHHHHhccC-----cH---HHHHHH
Q 002100 754 ALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVD-CEKLDLAADCYMNALNIK-----HT---RAHQGL 824 (967)
Q Consensus 754 ~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~-~g~~~~A~~~~~~Al~~~-----~~---~a~~~l 824 (967)
.......++.++|.+|.. .|++++|+.+|++|+++. +. .++..+
T Consensus 112 ---------------------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~l 164 (290)
T d1qqea_ 112 ---------------------------QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC 164 (290)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------------------------cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Confidence 001223678889988855 699999999999998731 11 268889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHH
Q 002100 825 ARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAE 904 (967)
Q Consensus 825 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~ 904 (967)
|.++..+|++++|+..|++++...+..... .......+...+.++...+++..|...
T Consensus 165 a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~d~~~A~~~ 221 (290)
T d1qqea_ 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLS-----------------------QWSLKDYFLKKGLCQLAATDAVAAART 221 (290)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSCTTT-----------------------GGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHHHHhCccchhh-----------------------hhhHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999999999887753211 011123456677888889999999999
Q ss_pred HHHHHhcCCChH------HHHHHHHHHHH--cCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 002100 905 LSRAIAFKPDLQ------LLHLRAAFHDS--MGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 905 ~~kal~~~p~~~------~~~~~a~~~~~--~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
++++++++|... .+..+..++.. .+.+++|+..|.++..++|-... ++.++.+...
T Consensus 222 ~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~---~L~~~k~~le 285 (290)
T d1qqea_ 222 LQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT---ILNKIKESIQ 285 (290)
T ss_dssp HHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH---HHHHHHHHHH
T ss_pred HHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHH---HHHHHHHhhc
Confidence 999999988621 34445555554 35689999999988887654444 4555555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=5.7e-13 Score=120.30 Aligned_cols=100 Identities=22% Similarity=0.208 Sum_probs=87.2
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHH
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEA 940 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~ 940 (967)
|++++|+..|+++++.+|+++.+|.++|.+|...|++++|+..|+++++++|+ +.+++.+|.++..+|++++|+..|++
T Consensus 17 g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 96 (117)
T d1elwa_ 17 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEE 96 (117)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44455555555555667778888999999999999999999999999999999 56999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHhh
Q 002100 941 ALCLDPNHTDTLELYDKATER 961 (967)
Q Consensus 941 al~~~P~~~~~l~l~~r~~~~ 961 (967)
+++++|+++++...+.+++.+
T Consensus 97 a~~~~p~~~~~~~~l~~l~~r 117 (117)
T d1elwa_ 97 GLKHEANNPQLKEGLQNMEAR 117 (117)
T ss_dssp HHTTCTTCHHHHHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHHHhCc
Confidence 999999999999999998753
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=3.8e-12 Score=135.08 Aligned_cols=209 Identities=10% Similarity=-0.014 Sum_probs=154.8
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHhccCC-------ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhh
Q 002100 558 YRAILLVEENKLAAAITEINRIIGFKV-------SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDN 630 (967)
Q Consensus 558 ~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 630 (967)
..|.+|...++|++|++.|.+++++.+ ...++..+|.+|..+|++++|+..|++++++.+.............
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 347889999999999999999998743 2468999999999999999999999999998665533222222224
Q ss_pred hHhhhHHH-hhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCC------ChHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002100 631 LVETLQPL-VQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPG------KSLLRFRQSLLLLRLNSQKAAMRSLRL 703 (967)
Q Consensus 631 ~~~~l~~~-~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~------~~~~~~~~g~~~~~~g~~~~A~~~l~~ 703 (967)
.++.++.. .+++++| +..|.++++..+. ....+..+|.++..+|+|++|+..|++
T Consensus 122 ~l~~~~~~~~~~~~~A------------------~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~ 183 (290)
T d1qqea_ 122 ELGEILENDLHDYAKA------------------IDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (290)
T ss_dssp HHHHHHHHTTCCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhHhhHHHHHHHH------------------HHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHH
Confidence 55555543 5888888 8888888766432 234578899999999999999999999
Q ss_pred HHhcCCchh-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHh
Q 002100 704 ARNYSTSEH-------EKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEAL 776 (967)
Q Consensus 704 al~~~p~~~-------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~ 776 (967)
++...+... ..+...+.++...|+++.|...++++++++|.+..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~----------------------------- 234 (290)
T d1qqea_ 184 LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD----------------------------- 234 (290)
T ss_dssp HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------------------------------
T ss_pred HHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccc-----------------------------
Confidence 999887653 34677889999999999999999999999986540
Q ss_pred cCCCCCCchHHHHHHhHHHHHh--cccHHHHHHHHHHHhccCcHH
Q 002100 777 RCPSDGLRKGQALNNLGSVYVD--CEKLDLAADCYMNALNIKHTR 819 (967)
Q Consensus 777 ~~~~~~~~~~~a~~~lg~~~~~--~g~~~~A~~~~~~Al~~~~~~ 819 (967)
......+..+..++.. .+.+++|+..|.++.++++..
T Consensus 235 ------sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~ 273 (290)
T d1qqea_ 235 ------SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (290)
T ss_dssp ---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred ------hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHH
Confidence 0111233444444443 456899999999888887643
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=2.5e-12 Score=127.13 Aligned_cols=129 Identities=19% Similarity=0.201 Sum_probs=88.2
Q ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHH
Q 002100 788 ALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMA 867 (967)
Q Consensus 788 a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A 867 (967)
.+++.|..+...|+|++|++.|.++.. .+..+++++|.+|..+|++++|++.|+++++++|+++.+|..
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i~~-~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~---------- 75 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAVQD-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ---------- 75 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH----------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHH----------
Confidence 445679999999999999999987544 345689999999999999999999988888777665555555
Q ss_pred HHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-----------------hHHHHHHHHHHHHcCC
Q 002100 868 KSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD-----------------LQLLHLRAAFHDSMGD 930 (967)
Q Consensus 868 ~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~-----------------~~~~~~~a~~~~~~g~ 930 (967)
+|.++.++|++++|++.|+++++..+. .++++++|.++..+|+
T Consensus 76 --------------------~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~ 135 (192)
T d1hh8a_ 76 --------------------RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 135 (192)
T ss_dssp --------------------HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC
T ss_pred --------------------HHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC
Confidence 445555555555555555555443221 1245556666666666
Q ss_pred hHHHHHHHHHHHhcCCC
Q 002100 931 HLHTQRDCEAALCLDPN 947 (967)
Q Consensus 931 ~~~A~~~~~~al~~~P~ 947 (967)
+++|++.+++|+.+.|+
T Consensus 136 ~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 136 WKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 66666666666665555
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=1.5e-11 Score=131.54 Aligned_cols=217 Identities=12% Similarity=-0.015 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHc--------------CChHHHHHHHHHHHhc-ccchHHHHHHHHHhhhcC
Q 002100 695 KAAMRSLRLARNYSTSEHEKLVYEGWILYDT--------------GHREEALAKAEESISI-QRSFEAFFLKAYALADSS 759 (967)
Q Consensus 695 ~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~--------------g~~~eA~~~~~~al~~-~p~~~~~~~~~~~la~~~ 759 (967)
..+...|++|+...|.+++.|...+..+... +..++|...|+++++. .|..
T Consensus 33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~-------------- 98 (308)
T d2onda1 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN-------------- 98 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC--------------
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCC--------------
Confidence 3455577788887788777777666544332 2346677777777753 3322
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCc---HHHHHHHHHHHHHhCCHHH
Q 002100 760 LNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKH---TRAHQGLARVYHLKNQRKA 836 (967)
Q Consensus 760 ~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~---~~a~~~la~~~~~~g~~~~ 836 (967)
...|...+.++..+|++++|...|+++++..+ ..++..++......++++.
T Consensus 99 --------------------------~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (308)
T d2onda1 99 --------------------------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp --------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHH
T ss_pred --------------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHH
Confidence 26788889999999999999999999999544 3378899999999999999
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHc-----cCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 002100 837 AYDEMTKLIEKARNNASAYEKRSE-----YCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAF 911 (967)
Q Consensus 837 A~~~~~~al~~~p~~~~~~~~~~~-----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~ 911 (967)
|.+.|.++++..|.....|...+. .++.+.|...|+++++..|+++..|...+..+...|+++.|...|++++..
T Consensus 153 ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 153 GRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 999999999999999888877773 278999999999999999999999999999999999999999999999998
Q ss_pred CCCh-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 002100 912 KPDL-----QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDT 951 (967)
Q Consensus 912 ~p~~-----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 951 (967)
.|.+ ..+.....+....|+.+.+...++++.++.|+....
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~ 277 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccccc
Confidence 7642 266677777788899999999999999999987543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=9.4e-12 Score=122.95 Aligned_cols=162 Identities=12% Similarity=0.066 Sum_probs=99.4
Q ss_pred chhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc
Q 002100 522 VGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE 600 (967)
Q Consensus 522 ~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g 600 (967)
.|..+...+.| ++|+..|.++ .|.++.+|+++|.+|..+|++++|+..|+++++++| ++.+++.+|.+|..+|
T Consensus 11 ~g~~~~~~~d~---~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 11 EGVLAADKKDW---KGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHHTTCH---HHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCH---HHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence 45555555544 6666666643 344556666777777777777777777777777777 6667777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHH
Q 002100 601 DYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLL 680 (967)
Q Consensus 601 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~ 680 (967)
++++|+.+|++++...|.+..... ..++..+ ......+
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~-----~~~~~~~-------------------------------------~~~~~e~ 122 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDY-----KILGLQF-------------------------------------KLFACEV 122 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEEC-----GGGTBCC-------------------------------------EEEHHHH
T ss_pred cHHHHHHHHHHHHHhCccCchHHH-----HHhhhhc-------------------------------------ccchHHH
Confidence 777777777777666554432210 0000000 0111245
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 002100 681 RFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQR 743 (967)
Q Consensus 681 ~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p 743 (967)
++++|.++..+|++++|+..|++++++.|+... ...+.|+..+.+.....|
T Consensus 123 ~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~------------~~~~~Al~~~~~~~~~~~ 173 (192)
T d1hh8a_ 123 LYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH------------SKIDKAMECVWKQKLYEP 173 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG------------GHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcch------------HHHHHHHHHHHhhhhCCc
Confidence 678888888889999999988888888887422 233455555555544444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=9.3e-12 Score=112.13 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
+...|..++..|+|++|+..|+++++.+| ++.++..+|.+|..+|++++|+..|.++++++|+++.++
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 74 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGY 74 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHH
Confidence 34445555555555555555555555555 455555555555555555555555555555555444444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.31 E-value=5.4e-12 Score=122.07 Aligned_cols=129 Identities=13% Similarity=0.132 Sum_probs=105.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHH
Q 002100 822 QGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEA 901 (967)
Q Consensus 822 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA 901 (967)
...|..++..|++++|+..|+++++..+. ..+.........++|....++.++|.++.+.|++++|
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A 96 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEG--------------SRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGA 96 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------HHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhh--------------hhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchh
Confidence 44566677777777777777777765442 1122223344566788888999999999999999999
Q ss_pred HHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhhh
Q 002100 902 IAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNE 964 (967)
Q Consensus 902 i~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~~ 964 (967)
+..|+++++++|+ ..+++.+|.+|..+|++++|+.+|+++++++|+++++...+.++.....+
T Consensus 97 i~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~ 160 (169)
T d1ihga1 97 VDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 160 (169)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999 45999999999999999999999999999999999999888888776543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.29 E-value=4.7e-10 Score=116.68 Aligned_cols=233 Identities=13% Similarity=0.102 Sum_probs=185.5
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchHHHHHHH
Q 002100 677 KSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYD----TGHREEALAKAEESISIQRSFEAFFLKA 752 (967)
Q Consensus 677 ~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~~ 752 (967)
+|..++.+|..+...+++.+|++.|+++.+. ++.++++.+|.+|.. ..++..|..+++.+..... .
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~--~------ 70 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY--S------ 70 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--H------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc--c------
Confidence 4678999999999999999999999999875 477899999999987 6789999999998875432 1
Q ss_pred HHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHh----cccHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 002100 753 YALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVD----CEKLDLAADCYMNALNIKHTRAHQGLARVY 828 (967)
Q Consensus 753 ~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~~~~~~a~~~la~~~ 828 (967)
.+..++|.++.. ..+.++|...|+++.+.++..+...++..+
T Consensus 71 ----------------------------------~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~ 116 (265)
T d1ouva_ 71 ----------------------------------NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIY 116 (265)
T ss_dssp ----------------------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------------------------chhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccc
Confidence 456666766654 568889999999999998888888888887
Q ss_pred HH----hCCHHHHHHHHHHHHHHccCCHHHHHHHHcc--------CChHHHHHHHHHhhccCCCCchHHHHHHHHHHh--
Q 002100 829 HL----KNQRKAAYDEMTKLIEKARNNASAYEKRSEY--------CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMD-- 894 (967)
Q Consensus 829 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~--------~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~-- 894 (967)
.. ......|...+.+... +.+...+..++.. .+...+...++.+.+ +.++.+.+++|.+|..
T Consensus 117 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~ 192 (265)
T d1ouva_ 117 HDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGE 192 (265)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTC
T ss_pred cCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCc
Confidence 75 4557777777777655 4455666666621 567788888888875 4678999999999987
Q ss_pred --CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 002100 895 --DHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDS----MGDHLHTQRDCEAALCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 895 --~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~ 960 (967)
..++++|+.+|+++.+.. .+.+.+.+|.+|.. ..|+++|+.+|++|.+..+ .+....+.++..
T Consensus 193 ~~~~d~~~A~~~~~~aa~~g-~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~--~~A~~~l~~l~~ 261 (265)
T d1ouva_ 193 GATKNFKEALARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA--KGACDILKQLKI 261 (265)
T ss_dssp SSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC--HHHHHHHHTCCC
T ss_pred ccccchhhhhhhHhhhhccc-CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC--HHHHHHHHHHHH
Confidence 679999999999999885 46688999999986 4589999999999988764 445556655544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=2.6e-11 Score=115.85 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHH
Q 002100 589 LELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVH 668 (967)
Q Consensus 589 ~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~ 668 (967)
+...|..|+..|+|++|+..|+++++++|++..++ ..++.++...+++++| +..|.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~------~~lg~~~~~~~~~~~A------------------~~~~~ 68 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYY------GNRSLAYLRTECYGYA------------------LGDAT 68 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH------HHHHHHHHHTTCHHHH------------------HHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhh------hhhHHHHHhccccchH------------------HHHHH
Confidence 44556666666666666666666666666666666 5666666666666666 66666
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 002100 669 HMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILY 723 (967)
Q Consensus 669 ~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~ 723 (967)
++++.+|.+..++..+|.++..+|++++|+..+++++.++|+++.++..++.+..
T Consensus 69 kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~ 123 (159)
T d1a17a_ 69 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 123 (159)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 7777777777777777888888888888888888888888888877777666543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=2.4e-11 Score=116.03 Aligned_cols=99 Identities=20% Similarity=0.221 Sum_probs=55.1
Q ss_pred chhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc
Q 002100 522 VGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE 600 (967)
Q Consensus 522 ~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g 600 (967)
.|..+...+.| ++|+..|+++++++|+++.+|.++|.+++..|++++|+..|+++++++| +..++..+|.++..+|
T Consensus 16 ~gn~~~~~~~y---~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 16 QANDYFKAKDY---ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHTTCH---HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCH---HHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 44445555544 5555555555555555555555555555555555555555555555555 5555555555555555
Q ss_pred CHHHHHHHHHHHHHhCCCchHHh
Q 002100 601 DYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 601 ~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
++++|+..|++++.++|++..++
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~ 115 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAK 115 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHH
Confidence 55555555555555555555444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=6.2e-10 Score=118.68 Aligned_cols=235 Identities=9% Similarity=-0.082 Sum_probs=179.4
Q ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHHHHHHHHhHhh-CCC
Q 002100 473 YKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEKMMDLNTATEL-DPT 551 (967)
Q Consensus 473 y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A~~~~~~al~l-~P~ 551 (967)
.+.+...|++|+...|.....++..+.+ +..-.......+.+....... ++|...|++|++. .|.
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~-----------~~~~~~~~~~~~~~~~~~~~~---~~a~~i~~ral~~~~p~ 97 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQY-----------LEQSSKLLAEKGDMNNAKLFS---DEAANIYERAISTLLKK 97 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHHHHTSCCHHHHHHH---HHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHH-----------HHHcCchHHHHHHHhhcccch---HHHHHHHHHHHHHcCCC
Confidence 4567778999998855333333222111 111000001112222233333 8899999999975 788
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C-hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhh
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKV-S-PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGD 629 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 629 (967)
....|...+..+...|++++|...|+++++..| + ..++...+.+....|+++.|...|.++++..|.....+
T Consensus 98 ~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~------ 171 (308)
T d2onda1 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY------ 171 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH------
T ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH------
Confidence 888999999999999999999999999999999 5 45788999999999999999999999999999988877
Q ss_pred hhHhhhHH-HhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 002100 630 NLVETLQP-LVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYS 708 (967)
Q Consensus 630 ~~~~~l~~-~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~ 708 (967)
...+.+.. ..++.+.| ...|+++++.+|.++.++...+..+...|+++.|...|++++...
T Consensus 172 ~~~a~~e~~~~~~~~~a------------------~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 172 VTAALMEYYCSKDKSVA------------------FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHHHHTSCCHHHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhccCHHHH------------------HHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 33343332 23445555 889999999999999999999999999999999999999999987
Q ss_pred CchhH----HHHHHHHHHHHcCChHHHHHHHHHHHhcccch
Q 002100 709 TSEHE----KLVYEGWILYDTGHREEALAKAEESISIQRSF 745 (967)
Q Consensus 709 p~~~~----a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 745 (967)
|.+++ .|..........|+.+.+...++++.+..|+.
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 75543 56666666677899999999999999888844
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.27 E-value=1.6e-11 Score=118.62 Aligned_cols=135 Identities=11% Similarity=0.106 Sum_probs=107.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCChHHH
Q 002100 459 AFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSGKEK 538 (967)
Q Consensus 459 a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~~~A 538 (967)
.+...|..++..|+|++|+..|+++++..+.. .+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~----------------------------------------------~~ 62 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS----------------------------------------------RA 62 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------------------------------------------HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh----------------------------------------------hh
Confidence 35578999999999999999999998752211 11
Q ss_pred HHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 002100 539 MMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDP 617 (967)
Q Consensus 539 ~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 617 (967)
.....+...++|....++.++|.++..+|+|++|+..|+++++++| ++.+++.+|.+|..+|++++|+..|+++++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p 142 (169)
T d1ihga1 63 AAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 142 (169)
T ss_dssp HSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 1112233445666778899999999999999999999999999999 899999999999999999999999999999999
Q ss_pred CchHHhhhhhhhhhHhhhHHHhhchhhH
Q 002100 618 SYMMFYGQLHGDNLVETLQPLVQQWSQA 645 (967)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A 645 (967)
++..+. ..+..+...+.++.++
T Consensus 143 ~n~~~~------~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 143 EDKAIQ------AELLKVKQKIKAQKDK 164 (169)
T ss_dssp TCHHHH------HHHHHHHHHHHHHHHH
T ss_pred CCHHHH------HHHHHHHHHHHHHHHH
Confidence 998887 4555666555444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=8.4e-12 Score=112.86 Aligned_cols=103 Identities=10% Similarity=0.008 Sum_probs=91.2
Q ss_pred CChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCC---CHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHcCChHHHH
Q 002100 862 CDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDH---KEAEAIAELSRAIAFKPDL---QLLHLRAAFHDSMGDHLHTQ 935 (967)
Q Consensus 862 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g---~~~eAi~~~~kal~~~p~~---~~~~~~a~~~~~~g~~~~A~ 935 (967)
+++++|...|++++.++|+++.+++++|+++++.+ ++++|+..|+++++.+|.+ .+++++|.+|..+|++++|+
T Consensus 13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~ 92 (122)
T d1nzna_ 13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHH
Confidence 46677777788888888899999999999998755 4567999999999998875 38999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhhhhh
Q 002100 936 RDCEAALCLDPNHTDTLELYDKATERVNE 964 (967)
Q Consensus 936 ~~~~~al~~~P~~~~~l~l~~r~~~~~~~ 964 (967)
++|+++|+++|++.++..+...+.+++++
T Consensus 93 ~~~~~aL~~~P~~~~A~~l~~~I~~~~~k 121 (122)
T d1nzna_ 93 KYVRGLLQTEPQNNQAKELERLIDKAMKK 121 (122)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999988754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=4.5e-11 Score=115.43 Aligned_cols=137 Identities=19% Similarity=0.160 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCCh
Q 002100 456 KQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSG 535 (967)
Q Consensus 456 ~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~ 535 (967)
.+..+...|..++..|+|++|+.+|++++...+...... .. .
T Consensus 12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~----------------------------~~---~------- 53 (170)
T d1p5qa1 12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS----------------------------NE---E------- 53 (170)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC----------------------------SH---H-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc----------------------------hH---H-------
Confidence 456677899999999999999999999998744210000 00 0
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLT 614 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 614 (967)
......+ ...+|.++|.+|+.+|+|++|+..+++++.++| ++.+++.+|.+|..+|++++|+..|+++++
T Consensus 54 ~~~~~~~---------~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 54 AQKAQAL---------RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hhhhchh---------HHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 0000000 113567789999999999999999999999999 889999999999999999999999999999
Q ss_pred hCCCchHHhhhhhhhhhHhhhHHHhhchhhH
Q 002100 615 LDPSYMMFYGQLHGDNLVETLQPLVQQWSQA 645 (967)
Q Consensus 615 l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A 645 (967)
++|+++.+. ..++.+.....++...
T Consensus 125 l~P~n~~~~------~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 125 LYPNNKAAK------TQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HCSSCHHHH------HHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHH------HHHHHHHHHHHHHHHH
Confidence 999988887 4555666555555444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=1.7e-11 Score=121.83 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=92.8
Q ss_pred chhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhc
Q 002100 522 VGWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALE 600 (967)
Q Consensus 522 ~g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g 600 (967)
.|..+...+.| ++|+..|++|++++|+++.+|.++|.+|...|++++|+..|+++++++| ++.+|+.+|.+|..+|
T Consensus 10 ~Gn~~~~~g~~---~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~ 86 (201)
T d2c2la1 10 QGNRLFVGRKY---PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME 86 (201)
T ss_dssp HHHHHHHTTCH---HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 47788888866 9999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCchHHh
Q 002100 601 DYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 601 ~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
++++|+..|+++++++|++...+
T Consensus 87 ~~~~A~~~~~~al~l~p~~~~~~ 109 (201)
T d2c2la1 87 SYDEAIANLQRAYSLAKEQRLNF 109 (201)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHhCcccHHHH
Confidence 99999999999999998766554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.23 E-value=7.3e-11 Score=111.70 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHH
Q 002100 821 HQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE 900 (967)
Q Consensus 821 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 900 (967)
+...|..++..|++.+|+..|+++++..+.... ..+.........+ ...++.++|.+|+++|++++
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~Nla~~~~~l~~~~~ 85 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE---------WDDQILLDKKKNI-----EISCNLNLATCYNKNKDYPK 85 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT---------CCCHHHHHHHHHH-----HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhh---------hhhHHHHHhhhhH-----HHHHHhhHHHHHHHhcccch
Confidence 344566666667777777777776665543110 0111111111111 12467899999999999999
Q ss_pred HHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhhhcC
Q 002100 901 AIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVNEQQ 966 (967)
Q Consensus 901 Ai~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~~~~ 966 (967)
|+..++++++++|++ .+++.+|.+|..+|++++|+.+|+++++++|+|.++...+..+..++++.+
T Consensus 86 Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~~ 152 (153)
T d2fbna1 86 AIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR 152 (153)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence 999999999999995 699999999999999999999999999999999999999999998887654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.22 E-value=3.9e-10 Score=117.28 Aligned_cols=230 Identities=12% Similarity=0.008 Sum_probs=164.3
Q ss_pred CchhHHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCchHHhhhhh
Q 002100 552 LSYPYKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIA----LEDYDGALRDVRALLTLDPSYMMFYGQLH 627 (967)
Q Consensus 552 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 627 (967)
|+.+++.+|..++..+++++|++.|+++.+.. +..+++.+|.+|.. ..++..|...++.+.... ++.+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~---- 73 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC---- 73 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH----
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchh----
Confidence 46789999999999999999999999997643 78899999999988 678999999999887654 34444
Q ss_pred hhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH----hcCHHHHHHHHHH
Q 002100 628 GDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLR----LNSQKAAMRSLRL 703 (967)
Q Consensus 628 ~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~~p~~~~~~~~~g~~~~~----~g~~~~A~~~l~~ 703 (967)
..++.++....... .+...++..+.++.+..+. .....++..+.. ......|...+.+
T Consensus 74 --~~l~~~~~~~~~~~--------------~~~~~a~~~~~~a~~~g~~--~a~~~l~~~~~~~~~~~~~~~~a~~~~~~ 135 (265)
T d1ouva_ 74 --HLLGNLYYSGQGVS--------------QNTNKALQYYSKACDLKYA--EGCASLGGIYHDGKVVTRDFKKAVEYFTK 135 (265)
T ss_dssp --HHHHHHHHHTSSSC--------------CCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred --hccccccccccccc--------------hhhHHHHHHHhhhhhhhhh--hHHHhhcccccCCCcccchhHHHHHHhhh
Confidence 33344333211100 1112237777777765443 444555555554 4456677777776
Q ss_pred HHhcCCchhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCC
Q 002100 704 ARNYSTSEHEKLVYEGWILYD----TGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCP 779 (967)
Q Consensus 704 al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~ 779 (967)
... +.+...+..+|.++.. ..+...+...++.+.+..
T Consensus 136 ~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g------------------------------------- 176 (265)
T d1ouva_ 136 ACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK------------------------------------- 176 (265)
T ss_dssp HHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------------------------------------
T ss_pred hhc--ccccchhhhhhhhhccCCCcccccccchhhhhcccccc-------------------------------------
Confidence 655 3445677888888875 345556666666665321
Q ss_pred CCCCchHHHHHHhHHHHHh----cccHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHccC
Q 002100 780 SDGLRKGQALNNLGSVYVD----CEKLDLAADCYMNALNIKHTRAHQGLARVYHL----KNQRKAAYDEMTKLIEKARN 850 (967)
Q Consensus 780 ~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 850 (967)
...+.+++|.+|.. .+++++|+.+|+++.+.+++.+.+.||.+|.. ..++++|+++|+++.+....
T Consensus 177 -----~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 177 -----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp -----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred -----ccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 12688889988886 67899999999999999999999999999986 44788999999999887653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.5e-11 Score=118.78 Aligned_cols=128 Identities=17% Similarity=0.152 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHH
Q 002100 821 HQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE 900 (967)
Q Consensus 821 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 900 (967)
+...|..++..|++++|+..|+++|+..|...... .........+ ...++.++|.+|++.|++++
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~------~~~~~~~~~~---------~~~~~~nla~~y~k~~~~~~ 80 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS------NEEAQKAQAL---------RLASHLNLAMCHLKLQAFSA 80 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC------SHHHHHHHHH---------HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc------hHHHhhhchh---------HHHHHHHHHHHHHhhhhccc
Confidence 33455566666666666666666666555321100 0000011111 12357889999999999999
Q ss_pred HHHHHHHHHhcCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 002100 901 AIAELSRAIAFKPD-LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 901 Ai~~~~kal~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
|+..++++|+++|+ ..+++.+|.+|..+|++++|+.+|+++++++|+|+.+...+.++..+..
T Consensus 81 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 81 AIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998 5699999999999999999999999999999999999998888876554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=1.9e-11 Score=121.56 Aligned_cols=103 Identities=19% Similarity=0.111 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHH
Q 002100 586 PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLA 665 (967)
Q Consensus 586 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~ 665 (967)
.+.+...|..++..|+|++|+..|+++++++|+++.++ .++|.+|..+++|++| +.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~------~~lg~~y~~~~~~~~A------------------i~ 59 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYY------TNRALCYLKMQQPEQA------------------LA 59 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHH------HHHHHHHHHTTCHHHH------------------HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------HhHHHHHhhhhhhhhh------------------hH
Confidence 33444445555555555555555555555555554444 4444444444444444 44
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchh
Q 002100 666 VVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEH 712 (967)
Q Consensus 666 ~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~ 712 (967)
.|.++++++|.++.+|+++|.+|..+|++++|+..|+++++++|++.
T Consensus 60 ~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~ 106 (201)
T d2c2la1 60 DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (201)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 45555555555555555555555555555555555555555555443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.18 E-value=1.4e-10 Score=109.72 Aligned_cols=123 Identities=11% Similarity=0.079 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCC
Q 002100 455 QKQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCS 534 (967)
Q Consensus 455 ~~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~ 534 (967)
+.+..+...|..++..|+|++|+..|++|+..-+..... .
T Consensus 15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~-----------------------------~----------- 54 (153)
T d2fbna1 15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW-----------------------------D----------- 54 (153)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC-----------------------------C-----------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh-----------------------------h-----------
Confidence 345567789999999999999999999999863210000 0
Q ss_pred hHHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002100 535 GKEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALL 613 (967)
Q Consensus 535 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al 613 (967)
+.........+ ....+.++|.+|+.+|++++|+..+++++.++| +..+++.+|.+|..+|++++|+..|++++
T Consensus 55 -~~~~~~~~~~~-----~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al 128 (153)
T d2fbna1 55 -DQILLDKKKNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 128 (153)
T ss_dssp -CHHHHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -hHHHHHhhhhH-----HHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence 00000001111 113567899999999999999999999999999 89999999999999999999999999999
Q ss_pred HhCCCchHHh
Q 002100 614 TLDPSYMMFY 623 (967)
Q Consensus 614 ~l~p~~~~~~ 623 (967)
+++|++..+.
T Consensus 129 ~l~P~n~~~~ 138 (153)
T d2fbna1 129 SLNPNNLDIR 138 (153)
T ss_dssp HHSTTCHHHH
T ss_pred HhCCCCHHHH
Confidence 9999988887
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.17 E-value=6.9e-11 Score=105.31 Aligned_cols=94 Identities=11% Similarity=0.019 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcC
Q 002100 680 LRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSS 759 (967)
Q Consensus 680 ~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~ 759 (967)
..+.+|..+.+.|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|++.
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~------------- 84 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI------------- 84 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccc-------------
Confidence 4578999999999999999999999999999999999999999999999999999999999999777
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHh
Q 002100 760 LNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNAL 813 (967)
Q Consensus 760 ~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 813 (967)
.++.++|.+|...|++++|+++|++.|
T Consensus 85 ---------------------------~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 85 ---------------------------AVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------cchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 899999999999999999999999876
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=7.2e-11 Score=106.57 Aligned_cols=105 Identities=15% Similarity=0.092 Sum_probs=90.4
Q ss_pred HHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhc---CcHHHHHHHHHHHhccCC-C--hhHHHHHHHHHHH
Q 002100 525 MYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEE---NKLAAAITEINRIIGFKV-S--PDCLELRAWISIA 598 (967)
Q Consensus 525 ~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p-~--~~~~~~la~~~~~ 598 (967)
.+.....+ ++|.+.|++++.++|+++.+++++|.+++.. +++++|+..|++++..+| + .++++.+|.+|..
T Consensus 8 ~~~~~~~l---~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~ 84 (122)
T d1nzna_ 8 ELVSVEDL---LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84 (122)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHH---HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 34455555 9999999999999999999999999999874 456689999999999998 2 4689999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHH
Q 002100 599 LEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPL 638 (967)
Q Consensus 599 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~ 638 (967)
+|++++|+..|+++++++|++..+. .++..+...
T Consensus 85 ~g~~~~A~~~~~~aL~~~P~~~~A~------~l~~~I~~~ 118 (122)
T d1nzna_ 85 LKEYEKALKYVRGLLQTEPQNNQAK------ELERLIDKA 118 (122)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhCcCCHHHH------HHHHHHHHH
Confidence 9999999999999999999999888 455555444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=2.8e-10 Score=103.97 Aligned_cols=86 Identities=14% Similarity=0.045 Sum_probs=53.9
Q ss_pred CCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh--------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 002100 878 DPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDL--------QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 878 ~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~ 949 (967)
+|+++.++.++|.+|..+|++++|+..++++++++|+. .++..+|.++..++++++|+..|++++..+|+ +
T Consensus 34 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~ 112 (128)
T d1elra_ 34 DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-P 112 (128)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-H
T ss_pred CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-H
Confidence 34445555566666666666666666666666655441 14556777777777777777777777777664 4
Q ss_pred hHHHHHHHHHhhhhh
Q 002100 950 DTLELYDKATERVNE 964 (967)
Q Consensus 950 ~~l~l~~r~~~~~~~ 964 (967)
+++..+..+++..++
T Consensus 113 ~~~~~l~~~~k~lke 127 (128)
T d1elra_ 113 DVLKKCQQAEKILKE 127 (128)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 566666666655443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.12 E-value=1.1e-10 Score=112.43 Aligned_cols=128 Identities=11% Similarity=0.065 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHH
Q 002100 821 HQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE 900 (967)
Q Consensus 821 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 900 (967)
+...|..++..|++.+|+..|++++...+.... ...+.. ....+....++.++|.+|.++|++++
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~--------~~~~~~-------~~~~~~~~~~~~Nla~~~~~l~~~~~ 82 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYG--------LSEKES-------KASESFLLAAFLNLAMCYLKLREYTK 82 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--------CCHHHH-------HHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc--------cchhhh-------hhcchhHHHHHHhHHHHHHHhhhccc
Confidence 444566666666666666666666655442110 000000 00111123467889999999999999
Q ss_pred HHHHHHHHHhcCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 002100 901 AIAELSRAIAFKPDL-QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYDKATERVN 963 (967)
Q Consensus 901 Ai~~~~kal~~~p~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~r~~~~~~ 963 (967)
|+..++++++++|++ .+++.+|.+|..+|++++|+.+|+++++++|+++++...+..+.....
T Consensus 83 Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 83 AVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999994 599999999999999999999999999999999999888777765543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=3.3e-10 Score=103.51 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=95.2
Q ss_pred HHHHHHhHHHHHhcccHHHHHHHHHHHhccCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCC
Q 002100 786 GQALNNLGSVYVDCEKLDLAADCYMNALNIKH--TRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCD 863 (967)
Q Consensus 786 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 863 (967)
+..+.++|..++..|+|++|+.+|+++++.+| ..++.++|.+|..+|++++|+..++++++.+|++...+..++
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a---- 79 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA---- 79 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHH----
Confidence 35678899999999999999999999999554 458999999999999999999999999999887655544433
Q ss_pred hHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 002100 864 RDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRA 922 (967)
Q Consensus 864 ~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a 922 (967)
.++..+|.++...+++++|+.+|++++..+++++.+..+.
T Consensus 80 -------------------~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~ 119 (128)
T d1elra_ 80 -------------------KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119 (128)
T ss_dssp -------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4577899999999999999999999999998876655443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.10 E-value=4.9e-10 Score=107.76 Aligned_cols=136 Identities=10% Similarity=0.054 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHhCchhHHHHHHHHHHhcCChHHHHHHHHHHHhccCcchhHHHHHhhcCCh
Q 002100 456 KQLAFHQLGVVMLEREEYKDAQNWFKAAVEAGHIYSLVGVARTKFKRGHKYSAYKLMNSLISDYTPVGWMYQERSLYCSG 535 (967)
Q Consensus 456 ~a~a~~~lG~~~~~~g~y~~A~~~f~~al~~~~~~a~~~la~~~~~~g~~~~A~~~l~~~i~~~~~~g~~~~~~~~y~~~ 535 (967)
.+..+...|..++..|+|++|+..|++|+..-+..... ........-......+.+++.+|..++.|
T Consensus 14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~----------~~~~~~~~~~~~~~~~~Nla~~~~~l~~~--- 80 (168)
T d1kt1a1 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL----------SEKESKASESFLLAAFLNLAMCYLKLREY--- 80 (168)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC----------CHHHHHHHHHHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcc----------chhhhhhcchhHHHHHHhHHHHHHHhhhc---
Confidence 45567889999999999999999999999862210000 00000000001112344566777777766
Q ss_pred HHHHHHHHHhHhhCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHH
Q 002100 536 KEKMMDLNTATELDPTLSYPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDG 604 (967)
Q Consensus 536 ~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~ 604 (967)
++|+.+++++++++|++..+|+.+|.++..+|++++|+..|++++.++| ++.+...++.+....+.+.+
T Consensus 81 ~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e 150 (168)
T d1kt1a1 81 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE 150 (168)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence 8888888888888888888888888888888888888888888888888 77777777777766665543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.09 E-value=1.9e-10 Score=107.61 Aligned_cols=98 Identities=11% Similarity=0.077 Sum_probs=87.6
Q ss_pred hhHHHHHhhcCChHHHHHHHHHhHhhCCCCchhHHHHHHHHHhc----------CcHHHHHHHHHHHhccCC-ChhHHHH
Q 002100 523 GWMYQERSLYCSGKEKMMDLNTATELDPTLSYPYKYRAILLVEE----------NKLAAAITEINRIIGFKV-SPDCLEL 591 (967)
Q Consensus 523 g~~~~~~~~y~~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p-~~~~~~~ 591 (967)
+..+.....| ++|+..|+++++++|+++.+++.+|.++... +.+++|+..|+++++++| ++.+++.
T Consensus 4 ~~~~~r~~~f---e~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~ 80 (145)
T d1zu2a1 4 ETEFDRILLF---EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWC 80 (145)
T ss_dssp CCSHHHHHHH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHccH---HHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhh
Confidence 3445566667 9999999999999999999999999999854 556899999999999999 8999999
Q ss_pred HHHHHHHhcC-----------HHHHHHHHHHHHHhCCCchHHh
Q 002100 592 RAWISIALED-----------YDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 592 la~~~~~~g~-----------~~~A~~~~~~al~l~p~~~~~~ 623 (967)
+|.+|..+|+ |++|++.|+++++++|++..++
T Consensus 81 lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~ 123 (145)
T d1zu2a1 81 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 123 (145)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHH
Confidence 9999988764 7999999999999999998887
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.03 E-value=6.5e-10 Score=98.78 Aligned_cols=86 Identities=10% Similarity=-0.001 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhH
Q 002100 554 YPYKYRAILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLV 632 (967)
Q Consensus 554 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 632 (967)
..++.+|..+++.|++++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++++|++..++ ..+
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~------~~l 90 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH------AAL 90 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------HHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccch------HHH
Confidence 3456677777777777777777777777777 677777777777777777777777777777777777777 666
Q ss_pred hhhHHHhhchhhH
Q 002100 633 ETLQPLVQQWSQA 645 (967)
Q Consensus 633 ~~l~~~~~~~~~A 645 (967)
+.++...|++++|
T Consensus 91 a~~y~~~g~~~~A 103 (112)
T d1hxia_ 91 AVSHTNEHNANAA 103 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHH
Confidence 7777777777777
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.92 E-value=2.1e-09 Score=100.25 Aligned_cols=64 Identities=11% Similarity=-0.027 Sum_probs=55.9
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhcC-----------HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcC
Q 002100 663 SLAVVHHMLANDPGKSLLRFRQSLLLLRLNS-----------QKAAMRSLRLARNYSTSEHEKLVYEGWILYDTG 726 (967)
Q Consensus 663 al~~~~~~l~~~p~~~~~~~~~g~~~~~~g~-----------~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g 726 (967)
|+..|+++++++|+++.+++++|.+|..+|+ +++|+..|+++++++|++..++..++.+....+
T Consensus 60 Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~ 134 (145)
T d1zu2a1 60 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQ 134 (145)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999988754 789999999999999999988888887764433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=1.1e-08 Score=87.49 Aligned_cols=82 Identities=12% Similarity=-0.035 Sum_probs=72.7
Q ss_pred chHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHH
Q 002100 882 TYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPD--------LQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLE 953 (967)
Q Consensus 882 ~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~ 953 (967)
++-++.+|.++++.|+|.+|+.+|++|+++.|. .+++.++|.++.++|++++|+..|+++|+++|+|++++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 345678999999999999999999999987554 248999999999999999999999999999999999998
Q ss_pred HHHHHHhhhh
Q 002100 954 LYDKATERVN 963 (967)
Q Consensus 954 l~~r~~~~~~ 963 (967)
-+..++..+.
T Consensus 85 Nl~~~~~~l~ 94 (95)
T d1tjca_ 85 NLKYFEYIMA 94 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 8887776654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.72 E-value=9.2e-09 Score=97.22 Aligned_cols=111 Identities=12% Similarity=0.044 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHHH
Q 002100 821 HQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEAE 900 (967)
Q Consensus 821 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 900 (967)
+.+.|..++..|+|++|+..|++++++.|+.+..+. ....+....+|.++|.+|...|++++
T Consensus 12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~------------------~~~~~~~a~~~~nlg~~~~~lg~~~~ 73 (156)
T d2hr2a1 12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEA------------------FDHAGFDAFCHAGLAEALAGLRSFDE 73 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSC------------------CCHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhh------------------cccchhHHHHHHHHHHHHHHcCccch
Confidence 344577888889999999999999998886432100 00001124578899999999999999
Q ss_pred HHHHHHHHHhcCC-------Ch-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 002100 901 AIAELSRAIAFKP-------DL-----QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHT 949 (967)
Q Consensus 901 Ai~~~~kal~~~p-------~~-----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~ 949 (967)
|+..+++++++.| +. .+++++|.+|..+|++++|+..|++|+++.|+..
T Consensus 74 A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 74 ALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred hhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 9999999997643 21 2688899999999999999999999999976543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.68 E-value=4.6e-08 Score=92.27 Aligned_cols=106 Identities=12% Similarity=-0.036 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCch------------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHH
Q 002100 681 RFRQSLLLLRLNSQKAAMRSLRLARNYSTSE------------HEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAF 748 (967)
Q Consensus 681 ~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 748 (967)
.+..|..++..|+|++|+..|++++++.|+. ..++.++|.+|..+|++++|+..+++++.+.|...
T Consensus 12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~-- 89 (156)
T d2hr2a1 12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG-- 89 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc--
Confidence 3455888999999999999999999988764 35788999999999999999999999998876321
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhcc
Q 002100 749 FLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNI 815 (967)
Q Consensus 749 ~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~ 815 (967)
+ ......+....+++++|.+|..+|++++|+.+|++|+++
T Consensus 90 --------~-------------------~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 90 --------E-------------------LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp --------C-------------------TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------c-------------------ccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 000001122357899999999999999999999999884
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=5.4e-08 Score=83.07 Aligned_cols=71 Identities=15% Similarity=0.036 Sum_probs=64.9
Q ss_pred chhHHHHHHHHHhcCcHHHHHHHHHHHhccCC-C-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 553 SYPYKYRAILLVEENKLAAAITEINRIIGFKV-S-------PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 553 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
+...+.+|.++++.|+|++|+..|++|+++.| + .+++..+|.++..+|++++|+..|+++|+++|+++.++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 34578999999999999999999999998765 2 56899999999999999999999999999999999988
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.59 E-value=4.5e-08 Score=100.58 Aligned_cols=131 Identities=11% Similarity=-0.055 Sum_probs=108.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCc
Q 002100 685 SLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPES 764 (967)
Q Consensus 685 g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~ 764 (967)
+.-.++.|++++|+..++++++.+|++..++..+|.+|...|++++|++.|+++++++|++.
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~------------------ 64 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL------------------ 64 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH------------------
Confidence 34466789999999999999999999999999999999999999999999999999999776
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccC-cH--HHHHHHHHHHHHhCCHHHHHHHH
Q 002100 765 SAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIK-HT--RAHQGLARVYHLKNQRKAAYDEM 841 (967)
Q Consensus 765 ~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~-~~--~a~~~la~~~~~~g~~~~A~~~~ 841 (967)
.++..++.++...+..+++...+.+..... +. ..+...+.++...|++++|.+.+
T Consensus 65 ----------------------~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~ 122 (264)
T d1zbpa1 65 ----------------------PGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122 (264)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 677777887777777766655554444333 22 36777889999999999999999
Q ss_pred HHHHHHccCCHHHH
Q 002100 842 TKLIEKARNNASAY 855 (967)
Q Consensus 842 ~~al~~~p~~~~~~ 855 (967)
.++.+..|+.+..+
T Consensus 123 ~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 123 LQIEELRQEKGFLA 136 (264)
T ss_dssp HHHHHHCCCCCEEE
T ss_pred HHHHhcCCCCCccc
Confidence 99999999765443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.54 E-value=1.2e-07 Score=91.28 Aligned_cols=132 Identities=14% Similarity=0.033 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCCCCchHHHHHHHHHHhCCCHH
Q 002100 820 AHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDPMRTYPYRYRAAVLMDDHKEA 899 (967)
Q Consensus 820 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~ 899 (967)
.+...|......|++++|+..|.+++++.+...... ... ..-.......+.+....++..++.++...|+++
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~-----~~~---~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD-----LRD---FQFVEPFATALVEDKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG-----GTT---STTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc-----Ccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence 555566666666666666666666666655432110 000 000112223344455677888999999999999
Q ss_pred HHHHHHHHHHhcCCChH-HHHHHHHHHHHcCChHHHHHHHHHH-------HhcCCCchhHHHHHHHHHh
Q 002100 900 EAIAELSRAIAFKPDLQ-LLHLRAAFHDSMGDHLHTQRDCEAA-------LCLDPNHTDTLELYDKATE 960 (967)
Q Consensus 900 eAi~~~~kal~~~p~~~-~~~~~a~~~~~~g~~~~A~~~~~~a-------l~~~P~~~~~l~l~~r~~~ 960 (967)
+|+.+++++++.+|..+ ++..++.++..+|++.+|++.|+++ +.+.|. +++..++.++..
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~-~~l~~l~~~il~ 152 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-PTLRALNERILR 152 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHHh
Confidence 99999999999999965 8889999999999999999999988 567775 577777777653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.49 E-value=1e-07 Score=97.87 Aligned_cols=131 Identities=9% Similarity=-0.055 Sum_probs=91.6
Q ss_pred HHHHHhcCcHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHH
Q 002100 560 AILLVEENKLAAAITEINRIIGFKV-SPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPL 638 (967)
Q Consensus 560 a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~ 638 (967)
+.-.+..|++++|+..|+++++.+| +..++..++.++...|++++|+..|+++++++|++...+ ..++.+...
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~------~~l~~ll~a 76 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA------SQLRHLVKA 76 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH------HHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHH------HHHHHHHHh
Confidence 3456778999999999999999999 899999999999999999999999999999999988877 444555544
Q ss_pred hhchhhHhhHHHHHhhhccccccchHHHHHH-HHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHH
Q 002100 639 VQQWSQADCWMQLYDRWSSVDDIGSLAVVHH-MLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEK 714 (967)
Q Consensus 639 ~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~-~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a 714 (967)
.+...++ ...+.+ .+..+|.....+...+.++...|++++|+..++++.+..|+.+..
T Consensus 77 ~~~~~~a------------------~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 77 AQARKDF------------------AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HHHHHHH------------------TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred ccccHHH------------------HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 4444333 000000 111234334455556666667777777777777777766665443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.29 E-value=1.8e-06 Score=82.82 Aligned_cols=118 Identities=12% Similarity=-0.062 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHH
Q 002100 586 PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLA 665 (967)
Q Consensus 586 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~ 665 (967)
.+.+...|......|++++|+..|.+++.+.+........ .+ .|-..
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~------~~-------~w~~~-------------------- 57 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR------DF-------QFVEP-------------------- 57 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT------TS-------TTHHH--------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc------ch-------HHHHH--------------------
Confidence 4567788889999999999999999999998876533310 00 01000
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002100 666 VVHHMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESI 739 (967)
Q Consensus 666 ~~~~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 739 (967)
....+.+....++..++.++...|++++|+..+++++..+|.+..+|..++.++...|++.+|+..|+++.
T Consensus 58 ---~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 58 ---FATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 11112233346778899999999999999999999999999999999999999999999999999999884
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.20 E-value=4.9e-06 Score=72.49 Aligned_cols=83 Identities=11% Similarity=0.024 Sum_probs=75.3
Q ss_pred chHHHHHHHHHHhCC---CHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHH
Q 002100 882 TYPYRYRAAVLMDDH---KEAEAIAELSRAIAFKPDL--QLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTLELYD 956 (967)
Q Consensus 882 ~~~~~~la~~~~~~g---~~~eAi~~~~kal~~~p~~--~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l~l~~ 956 (967)
+.+.++.|+++.+.. +.++||..++.++..+|.. +.++.+|..|.++|+|++|++.++++|+++|+|..+..+..
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~ 114 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 114 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence 678899999999774 5679999999999998873 59999999999999999999999999999999999999999
Q ss_pred HHHhhhhh
Q 002100 957 KATERVNE 964 (967)
Q Consensus 957 r~~~~~~~ 964 (967)
.+++++++
T Consensus 115 ~Ie~~~~k 122 (124)
T d2pqrb1 115 MVEDKIQK 122 (124)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988753
|
| >d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Elongin C species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=6.4e-06 Score=69.18 Aligned_cols=81 Identities=26% Similarity=0.381 Sum_probs=59.8
Q ss_pred EEEEE-cCeEEEehhHHHhccCHHHHHhhcC--CCCCCccceEEeccCCCCHHHHHHHHHhHc--------CCCCC--CC
Q 002100 258 MSFCI-GNDEIRCVRYKIASLSRPFRTMLYG--GFIESRREKVNFSQNGISVEAMRAAEEFSR--------TKMLD--SF 324 (967)
Q Consensus 258 v~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~--~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Y--------t~~~~--~~ 324 (967)
|+|+- +|..|.+.+.+ |..|+.++.||.+ .+.|+....|.|+. |+..+|+.+++|++ .+.++ ++
T Consensus 3 i~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~~~e~~~~~IpL~n--V~s~iL~kViey~~~h~~~~~~~~~~~~fdi 79 (96)
T d2c9wc1 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFRE--IPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 79 (96)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHC------------CEEECTT--CCHHHHHHHHHHHHHHHHTC----CCCCCCC
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhccCccccCCCCeeECCC--CCHHHHHHHHHHHHhhccCcCCcCCCCCCcC
Confidence 45554 89999999988 7999999999964 45667778899976 99999999999995 22232 68
Q ss_pred CHHHHHHHHHHhchhCh
Q 002100 325 DPRLVLELLSFANRFCC 341 (967)
Q Consensus 325 ~~~~~~~ll~~A~~~~~ 341 (967)
+++.+.+|+.+||+++|
T Consensus 80 ~~~~l~eLi~AAnyLd~ 96 (96)
T d2c9wc1 80 APEIALELLMAANFLDC 96 (96)
T ss_dssp CHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhhhcC
Confidence 89999999999999876
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.80 E-value=8.6e-05 Score=66.84 Aligned_cols=112 Identities=14% Similarity=0.071 Sum_probs=84.3
Q ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCCCCCchHHHHHH
Q 002100 692 NSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLNPESSAYVIQL 771 (967)
Q Consensus 692 g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~ 771 (967)
.++++|+..|+++.+.. ++.+.+.++. ....++++|+.+++++.+..- .
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g~--~------------------------- 55 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACELNS--G------------------------- 55 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTTC--H-------------------------
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcccc--h-------------------------
Confidence 46788888888887764 4456666654 334678888888888774422 2
Q ss_pred HHHHhcCCCCCCchHHHHHHhHHHHHh----cccHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hCCHHHHHHHHHH
Q 002100 772 LEEALRCPSDGLRKGQALNNLGSVYVD----CEKLDLAADCYMNALNIKHTRAHQGLARVYHL----KNQRKAAYDEMTK 843 (967)
Q Consensus 772 le~~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~----~g~~~~A~~~~~~ 843 (967)
.+.+.+|.+|.. ..++++|+.+|+++.+.+++.+.+.||.+|.. ..+.++|+.+|++
T Consensus 56 ---------------~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~ 120 (133)
T d1klxa_ 56 ---------------NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 120 (133)
T ss_dssp ---------------HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred ---------------hhhhhHHHhhhhccccchhhHHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHH
Confidence 577788888765 46788999999999998888899999998887 4678888888888
Q ss_pred HHHHcc
Q 002100 844 LIEKAR 849 (967)
Q Consensus 844 al~~~p 849 (967)
+.+...
T Consensus 121 Aa~~G~ 126 (133)
T d1klxa_ 121 ACRLGS 126 (133)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 877544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.70 E-value=6.4e-05 Score=65.24 Aligned_cols=71 Identities=17% Similarity=0.068 Sum_probs=64.2
Q ss_pred chhHHHHHHHHHhc---CcHHHHHHHHHHHhccCC-C-hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHh
Q 002100 553 SYPYKYRAILLVEE---NKLAAAITEINRIIGFKV-S-PDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFY 623 (967)
Q Consensus 553 ~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p-~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 623 (967)
+.+.|..|.++... .+.++|+..++.++..+| + .++++.+|..|+++|+|++|...++++|+++|++..+.
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 56889999999865 456799999999999998 4 58999999999999999999999999999999999887
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.68 E-value=0.00025 Score=63.64 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=71.5
Q ss_pred ccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHccCChHHHHHHHHHhhccCC
Q 002100 800 EKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSMATQLDP 879 (967)
Q Consensus 800 g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~A~~~l~~al~l~p 879 (967)
.|+++|+.+|+++.+.++..+...|+.. .. .+.++|+..|+++.+.
T Consensus 7 kd~~~A~~~~~kaa~~g~~~a~~~l~~~--~~------------------------------~~~~~a~~~~~~aa~~-- 52 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEMFGCLSLVSN--SQ------------------------------INKQKLFQYLSKACEL-- 52 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHHHHHHTC--TT------------------------------SCHHHHHHHHHHHHHT--
T ss_pred cCHHHHHHHHHHHHHCCChhhhhhhccc--cc------------------------------cCHHHHHHHHhhhhcc--
Confidence 3566666666666666655555555421 22 3455555556555543
Q ss_pred CCchHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhcC
Q 002100 880 MRTYPYRYRAAVLMD----DHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDS----MGDHLHTQRDCEAALCLD 945 (967)
Q Consensus 880 ~~~~~~~~la~~~~~----~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~ 945 (967)
.++.+.+.+|.+|.. ..++++|+.+|+++.+.. ++.+.+.+|.+|.. ..|.++|+.+|++|.+..
T Consensus 53 g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 53 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC-cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 456677777777765 356788888888887654 35567778887776 457888888888887653
|
| >d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Elongin C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.62 E-value=0.00013 Score=61.45 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=65.8
Q ss_pred EEEEE-cCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC-----------CCCC--C
Q 002100 258 MSFCI-GNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT-----------KMLD--S 323 (967)
Q Consensus 258 v~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt-----------~~~~--~ 323 (967)
|+++- +|..|.+.+.+ |..|..++.||.+.+.|+ ...|.++. |+..+|+.|++|++- +.++ +
T Consensus 6 v~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~e~-~~~Ipl~~--V~s~iL~kViey~~~h~~~~~~~~~~~~~~efd 81 (99)
T d1hv2a_ 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRES-KGRIELKQ--FDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFE 81 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTC-TTEEEETT--SCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCC
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHHccCCCC-cCccccCC--CChHHHHHHHHHHHHhhhCcCcccccccCCCCC
Confidence 66665 89999999988 789999999998876664 45799976 999999999999961 1111 6
Q ss_pred CCHHHHHHHHHHhchhCh
Q 002100 324 FDPRLVLELLSFANRFCC 341 (967)
Q Consensus 324 ~~~~~~~~ll~~A~~~~~ 341 (967)
++.+.+.+|+.+|++++|
T Consensus 82 vd~~~l~eLi~AAnyLdI 99 (99)
T d1hv2a_ 82 IPTEMSLELLLAADYLSI 99 (99)
T ss_dssp CCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHhhhCC
Confidence 788999999999999875
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=0.11 Score=56.18 Aligned_cols=138 Identities=10% Similarity=-0.073 Sum_probs=93.0
Q ss_pred HHhcccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHH--ccCChHHHHHHH
Q 002100 796 YVDCEKLDLAADCYMNALN--IKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRS--EYCDRDMAKSDL 871 (967)
Q Consensus 796 ~~~~g~~~~A~~~~~~Al~--~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~--~~~~~~~A~~~l 871 (967)
....+++..+...+...-. .......+.+|+.+...|+.++|...|..+.. .+ + .|-.++ .+|..-.. .
T Consensus 295 al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~-~--fYG~LAa~~Lg~~~~~-~-- 367 (450)
T d1qsaa1 295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QR-G--FYPMVAAQRIGEEYEL-K-- 367 (450)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SC-S--HHHHHHHHHTTCCCCC-C--
T ss_pred HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CC-C--hHHHHHHHHcCCCCCC-C--
Confidence 4566889988888876543 22345889999999999999999999998865 33 2 333333 22211000 0
Q ss_pred HHhhccCCCC---chHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002100 872 SMATQLDPMR---TYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAA 941 (967)
Q Consensus 872 ~~al~l~p~~---~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~a 941 (967)
...+...+.. ...-..++..++..|+..+|...+..++... ++.-...+|.+..+.|.++.|+....++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~-~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 368 IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK-SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 0000001110 1123457888999999999999999888654 3456667899999999999999888777
|
| >d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: Potassium channel kv4.2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.15 E-value=6.6e-05 Score=63.85 Aligned_cols=94 Identities=10% Similarity=0.035 Sum_probs=69.3
Q ss_pred EEEEEcCeEEEehhHHHhccCH-HHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCHHHHHHHHHHh
Q 002100 258 MSFCIGNDEIRCVRYKIASLSR-PFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDPRLVLELLSFA 336 (967)
Q Consensus 258 v~~~v~~~~~~~hr~vLa~~S~-~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~~ll~~A 336 (967)
|+|-|||+.|...+..|..... +|..++...+......++-|. =+|..|+.||.|+.+|.+...+...+..++.=|
T Consensus 2 I~LNVGG~~f~t~~~TL~~~p~s~l~~~~~~~~~~~~~~~~FiD---Rdp~~F~~IL~ylR~G~l~~p~~~~~~~l~~Ea 78 (105)
T d1nn7a_ 2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFFD---RDPDIFRHILNFYRTGKLHYPRHECISAYDEEL 78 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEEC---SCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCCCCccccccccCcCCCCCcEEEe---CCHHHHHHHHHHHhcCccccCCCccHHHHHHHH
Confidence 7899999999999999976543 455555555555566678775 599999999999999998422333467788889
Q ss_pred chhChHHH--HHHHHHHHHh
Q 002100 337 NRFCCEEL--KSACDSYLAS 354 (967)
Q Consensus 337 ~~~~~~~l--~~~c~~~l~~ 354 (967)
++|+|+.+ ...|.+.+.+
T Consensus 79 ~fygi~~~~l~~cc~~~~~~ 98 (105)
T d1nn7a_ 79 AFFGLIPEIIGDCCYEEYKD 98 (105)
T ss_dssp HHHTCCSCCBCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHH
Confidence 99999764 3456555533
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.17 Score=54.59 Aligned_cols=220 Identities=13% Similarity=0.034 Sum_probs=130.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhhHHHhhchhhHhhHHHHHhhhccccccchHHHHH
Q 002100 589 LELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETLQPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVH 668 (967)
Q Consensus 589 ~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~ 668 (967)
+...+.......+.+.|...+.......+-.......+. ..++......+..+. +.....
T Consensus 217 ~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~------------------a~~~~~ 276 (450)
T d1qsaa1 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELR--DIVAWRLMGNDVTDE------------------QAKWRD 276 (450)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHH--HHHHHTSCSTTCCHH------------------HHHHHH
T ss_pred HHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHH--HHHHHHHHHcCchHH------------------HHHHHH
Confidence 344455556667888888888777665554443331110 011111111111122 244444
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHH
Q 002100 669 HMLANDPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAF 748 (967)
Q Consensus 669 ~~l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 748 (967)
................+ ..+..+++..+...++.............+.+|..+...|+.++|...|..+.. .+++- -
T Consensus 277 ~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~~fY-G 353 (450)
T d1qsaa1 277 DAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QRGFY-P 353 (450)
T ss_dssp HHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SCSHH-H
T ss_pred hhcccccchHHHHHHHH-HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CCChH-H
Confidence 44444444333333344 456678999998888765433334467789999999999999999999999875 45332 1
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCc---hHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHH
Q 002100 749 FLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLR---KGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLA 825 (967)
Q Consensus 749 ~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la 825 (967)
++.+-.|+.....+... +..... ....-...+..+...|+...|...+..++...++.-...+|
T Consensus 354 ~LAa~~Lg~~~~~~~~~-------------~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la 420 (450)
T d1qsaa1 354 MVAAQRIGEEYELKIDK-------------APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLA 420 (450)
T ss_dssp HHHHHHTTCCCCCCCCC-------------CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHcCCCCCCCcCC-------------CCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHH
Confidence 23334454332111000 000000 01122345677788899999999998888765666777889
Q ss_pred HHHHHhCCHHHHHHHHHHH
Q 002100 826 RVYHLKNQRKAAYDEMTKL 844 (967)
Q Consensus 826 ~~~~~~g~~~~A~~~~~~a 844 (967)
.+....|.++.|+....++
T Consensus 421 ~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 421 RYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHCCChhHHHHHHHHH
Confidence 9999999999999776654
|
| >d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: akv3.1 voltage-gated potassium channel species: California sea hare (Aplysia californica) [TaxId: 6500]
Probab=96.77 E-value=0.00013 Score=61.85 Aligned_cols=87 Identities=7% Similarity=0.059 Sum_probs=64.4
Q ss_pred EEEEEcCeEEEehhHHHhccCH-HHHHhhcCCCC-CCccceEEeccCCCCHHHHHHHHHhHcCCCCCCCCH-HHHHHHHH
Q 002100 258 MSFCIGNDEIRCVRYKIASLSR-PFRTMLYGGFI-ESRREKVNFSQNGISVEAMRAAEEFSRTKMLDSFDP-RLVLELLS 334 (967)
Q Consensus 258 v~~~v~~~~~~~hr~vLa~~S~-~F~~~~~~~~~-e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~~~~~~~~-~~~~~ll~ 334 (967)
|+|-|||+.|...+..|..... +|..|+.+... .+....+-|. =+|..|+.||.|+.+|.+. +++ ..+..++.
T Consensus 4 I~LNVGG~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylR~g~l~-~p~~~~~~~l~~ 79 (103)
T d3kvta_ 4 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFD---RHPGVFAQIINYYRSGKLH-YPTDVCGPLFEE 79 (103)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEEC---SCTTTHHHHHHHHHHSCBC-CCSSSCHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhhCccchhHHHHcCCCccCCCCCcEEec---CCHHHHHHHHHHHccCCcc-cccccCHHHHHH
Confidence 7889999999999999976544 55556555332 2334577775 6999999999999999994 433 34667888
Q ss_pred HhchhChHH-HHHHH
Q 002100 335 FANRFCCEE-LKSAC 348 (967)
Q Consensus 335 ~A~~~~~~~-l~~~c 348 (967)
=|++|+|+. +++.|
T Consensus 80 Ea~yygi~~~~l~~C 94 (103)
T d3kvta_ 80 ELEFWGLDSNQVEPC 94 (103)
T ss_dssp HHHHHTCCGGGBCGG
T ss_pred HHHHcCCCHHHHHHH
Confidence 899999963 44444
|
| >d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: Shaker potassium channel species: California sea hare (Aplysia californica) [TaxId: 6500]
Probab=96.53 E-value=0.00095 Score=55.80 Aligned_cols=83 Identities=7% Similarity=-0.030 Sum_probs=62.1
Q ss_pred EEEEEcCeEEEehhHHHhcc-CHHHHHhhcCC-CCCCccceEEeccCCCCHHHHHHHHHhHcCC-CCCCCCHHHHHHHHH
Q 002100 258 MSFCIGNDEIRCVRYKIASL-SRPFRTMLYGG-FIESRREKVNFSQNGISVEAMRAAEEFSRTK-MLDSFDPRLVLELLS 334 (967)
Q Consensus 258 v~~~v~~~~~~~hr~vLa~~-S~~F~~~~~~~-~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt~-~~~~~~~~~~~~ll~ 334 (967)
|+|-|||+.|...+..|... +.+|..|+... +..+...++-|. -+|..|+.||.|+.|+ .+...+...+..++.
T Consensus 3 I~LNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~g~~FiD---Rdp~~F~~IL~flR~~~~l~~~~~~~~~~l~~ 79 (100)
T d1t1da_ 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFD---RNRPSFDAILYFYQSGGRLRRPVNVPLDVFSE 79 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEEC---SCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhhCCCchhHHHHhCCCcCCCCCCeEEEe---cCHHHHHHHHHHHhcCCCcCCCCcccHHHHHH
Confidence 78999999999999999875 45677776533 223445578885 5999999999999985 552223334677888
Q ss_pred HhchhChHH
Q 002100 335 FANRFCCEE 343 (967)
Q Consensus 335 ~A~~~~~~~ 343 (967)
=|++|+|+.
T Consensus 80 Ea~y~gi~~ 88 (100)
T d1t1da_ 80 EIKFYELGE 88 (100)
T ss_dssp HHHHTTCCH
T ss_pred HHHHcCCCH
Confidence 899999976
|
| >d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Cyclin A/CDK2-associated p45, Skp1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.051 Score=40.21 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=44.0
Q ss_pred EEEEE-cCeEEEehhHHHhccCHHHHHhhcCCCCCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 258 MSFCI-GNDEIRCVRYKIASLSRPFRTMLYGGFIESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 258 v~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
|+|+. +|..|.+.+. .|..|...+.|+.+.- ...|.|+. |+..+|+.+++|++-
T Consensus 3 I~L~SsDg~~f~v~~~-~a~~S~tI~~ml~~~~----~~~Ipl~~--V~s~iL~kVieyc~~ 57 (61)
T d1fs1b2 3 IKLQSSDGEIFEVDVE-IAKQSVTIKTMLEDLG----MDPVPLPN--VNAAILKKVIQWCTH 57 (61)
T ss_dssp EEEECTTSCEEEEEGG-GGGTCHHHHHHHHHTC----CSSEECTT--CCHHHHHHHHHHHHH
T ss_pred EEEEecCCCEEEecHH-HHHHhHHHHHHHhcCC----CCCcccCC--cCHHHHHHHHHHHHH
Confidence 55654 8999999987 5689999999997532 34689975 999999999999863
|
| >d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.28 E-value=0.066 Score=41.14 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=42.7
Q ss_pred cEEEEE-cCeEEEehhHHHhccCHHHHHhhcCCC----CCCccceEEeccCCCCHHHHHHHHHhHcC
Q 002100 257 DMSFCI-GNDEIRCVRYKIASLSRPFRTMLYGGF----IESRREKVNFSQNGISVEAMRAAEEFSRT 318 (967)
Q Consensus 257 Dv~~~v-~~~~~~~hr~vLa~~S~~F~~~~~~~~----~e~~~~~i~~~~~~~~~~~~~~~l~~~Yt 318 (967)
-|+|+- +|..|.+.+. .|..|...+.|+...- .+.....|.|+. |+..+|+.|++|++-
T Consensus 2 ~I~L~SsDg~~F~v~~~-~a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~~--V~s~iL~kVieyc~~ 65 (72)
T d1nexa2 2 NVVLVSGEGERFTVDKK-IAERSLLLKNYLNDMGDDDDEDDDEIVMPVPN--VRSSVLQKVIEWAEH 65 (72)
T ss_dssp EEEEECTTSCEEEEEHH-HHTTSHHHHHTC-------------CEEECTT--CCHHHHHHHHHHHHH
T ss_pred eeEEEeCCCCEEEecHH-HHHHHHHHHHHHHhcCccccccCCCCcccCCC--cCHHHHHHHHHHHHH
Confidence 366765 8999999987 5689999999997432 223345789976 999999999999964
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.87 E-value=5.4 Score=40.06 Aligned_cols=131 Identities=11% Similarity=0.074 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHhhhcCC
Q 002100 681 RFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEKLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSL 760 (967)
Q Consensus 681 ~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~la~~~~ 760 (967)
|-.+..+|.+.++++.|+..+ ++..++.. .....-.++.+..+.+..-+...-.++..|++....+.... ...
T Consensus 177 ~~elv~Ly~~~~~~~~A~~~~---i~~~~~~~-~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~---~~~ 249 (336)
T d1b89a_ 177 WAELVFLYDKYEEYDNAIITM---MNHPTDAW-KEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLS---PRL 249 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH---HHSTTTTC-CHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHG---GGC
T ss_pred hHHHHHHHHhcCCHHHHHHHH---HHcchhhh-hHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhc---cCC
Confidence 344566778888888887753 33332211 12222334555666665555555555556644322211110 000
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCchHHHHHHhHHHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHH
Q 002100 761 NPESSAYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDE 840 (967)
Q Consensus 761 ~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~ 840 (967)
+ ..+ +-....+.++..-...+++.....+....+..++.+|...++++.
T Consensus 250 d---~~r------------------------~V~~~~k~~~l~li~p~Le~v~~~n~~~vn~al~~lyie~~d~~~---- 298 (336)
T d1b89a_ 250 D---HTR------------------------AVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA---- 298 (336)
T ss_dssp C---HHH------------------------HHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHH----
T ss_pred C---HHH------------------------HHHHHHhcCCcHHHHHHHHHHHHcChHHHHHHHHHHHhCcchhHH----
Confidence 0 111 122334455666666777776666666788889999999999643
Q ss_pred HHHHHHHcc
Q 002100 841 MTKLIEKAR 849 (967)
Q Consensus 841 ~~~al~~~p 849 (967)
+++.++.+.
T Consensus 299 l~~~i~~~~ 307 (336)
T d1b89a_ 299 LRTSIDAYD 307 (336)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHhc
Confidence 555555443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.53 E-value=7.7 Score=38.85 Aligned_cols=301 Identities=11% Similarity=-0.026 Sum_probs=148.9
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchHHhhhhhhhhhHhhh
Q 002100 556 YKYRAILLVEENKLAAAITEINRIIGFKVSPDCLELRAWISIALEDYDGALRDVRALLTLDPSYMMFYGQLHGDNLVETL 635 (967)
Q Consensus 556 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~l 635 (967)
.-..|....+.|.|+.|...|...-. +..+..++..+++++.|.+...++ ++...|.. ....
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~~d-------~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~------~~~~ 78 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNVSN-------FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKE------VCFA 78 (336)
T ss_dssp ------------CTTTHHHHHHHTTC-------HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHH------HHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCC-------HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHH------HHHH
Confidence 34456677778888888888775432 344556777888888888777655 23333311 1111
Q ss_pred HHHhhchhhHhhHHHHHhhhccccccchHHHHHHHHhc-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCchhHH
Q 002100 636 QPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLAN-DPGKSLLRFRQSLLLLRLNSQKAAMRSLRLARNYSTSEHEK 714 (967)
Q Consensus 636 ~~~~~~~~~A~~~~~l~~~~~~~d~~~al~~~~~~l~~-~p~~~~~~~~~g~~~~~~g~~~~A~~~l~~al~~~p~~~~a 714 (967)
.....+...+ ++... .-..+.-.......|...|.+++.+..++.++...+.+...
T Consensus 79 l~~~~e~~la-----------------------~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~ 135 (336)
T d1b89a_ 79 CVDGKEFRLA-----------------------QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 135 (336)
T ss_dssp HHHTTCHHHH-----------------------HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHH
T ss_pred HHhCcHHHHH-----------------------HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHH
Confidence 1111111111 11111 01122333345566677889999999999988888887888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH-HhcccchHHHHHHHHHhhhcCCCCCchHHHHHHHHHHhcCCCCCCchHHHHHHhH
Q 002100 715 LVYEGWILYDTGHREEALAKAEES-ISIQRSFEAFFLKAYALADSSLNPESSAYVIQLLEEALRCPSDGLRKGQALNNLG 793 (967)
Q Consensus 715 ~~~lg~~~~~~g~~~eA~~~~~~a-l~~~p~~~~~~~~~~~la~~~~~~~~~~~a~~~le~~~~~~~~~~~~~~a~~~lg 793 (967)
+..++.+|.+.+ .++-.+.++.. ...++ .+++...++. ..|..+.
T Consensus 136 ~~~L~~lyak~~-~~kl~e~l~~~s~~y~~----------------------~k~~~~c~~~-----------~l~~elv 181 (336)
T d1b89a_ 136 FTELAILYSKFK-PQKMREHLELFWSRVNI----------------------PKVLRAAEQA-----------HLWAELV 181 (336)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHSTTSCH----------------------HHHHHHHHTT-----------TCHHHHH
T ss_pred HHHHHHHHHHhC-hHHHHHHHHhccccCCH----------------------HHHHHHHHHc-----------CChHHHH
Confidence 888888776543 33333333332 11111 1222221111 2344566
Q ss_pred HHHHhcccHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHH-HHHccCChHHHHHHHH
Q 002100 794 SVYVDCEKLDLAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYE-KRSEYCDRDMAKSDLS 872 (967)
Q Consensus 794 ~~~~~~g~~~~A~~~~~~Al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~~~~~~~~~~A~~~l~ 872 (967)
.+|...|++++|+...-.-... ..-+...-.++.+..+.+...+...-.++..|.....+. ..+...+..+.+.
T Consensus 182 ~Ly~~~~~~~~A~~~~i~~~~~--~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~--- 256 (336)
T d1b89a_ 182 FLYDKYEEYDNAIITMMNHPTD--AWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVN--- 256 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHSTTT--TCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHH---
T ss_pred HHHHhcCCHHHHHHHHHHcchh--hhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHH---
Confidence 7778888888887765432210 001122233455566666666666655665664322111 1111122222222
Q ss_pred HhhccCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHH
Q 002100 873 MATQLDPMRTYPYRYRAAVLMDDHKEAEAIAELSRAIAFKPDLQLLHLRAAFHDSMGDHLHTQRDCEAALCLDPNHTDTL 952 (967)
Q Consensus 873 ~al~l~p~~~~~~~~la~~~~~~g~~~eAi~~~~kal~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~~l 952 (967)
...+.++..-...+++...+.+ ...+...++.+|...+|++. +++.++.+ ++-+.+
T Consensus 257 ------------------~~~k~~~l~li~p~Le~v~~~n-~~~vn~al~~lyie~~d~~~----l~~~i~~~-~~fd~~ 312 (336)
T d1b89a_ 257 ------------------YFSKVKQLPLVKPYLRSVQNHN-NKSVNESLNNLFITEEDYQA----LRTSIDAY-DNFDNI 312 (336)
T ss_dssp ------------------HHHHTTCTTTTHHHHHHHHTTC-CHHHHHHHHHHHHHTTCHHH----HHHHHHHC-CCSCHH
T ss_pred ------------------HHHhcCCcHHHHHHHHHHHHcC-hHHHHHHHHHHHhCcchhHH----HHHHHHHh-cccCHH
Confidence 3334455555556666654433 23466678888888888644 45555433 334455
Q ss_pred HHHHHHHh
Q 002100 953 ELYDKATE 960 (967)
Q Consensus 953 ~l~~r~~~ 960 (967)
.+-+|+++
T Consensus 313 ~l~~~le~ 320 (336)
T d1b89a_ 313 SLAQRLEK 320 (336)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 55666554
|
| >d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Skp1 dimerisation domain-like superfamily: Skp1 dimerisation domain-like family: Skp1 dimerisation domain-like domain: Cyclin A/CDK2-associated p45, Skp1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.12 E-value=0.21 Score=35.74 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCCChhhHHHH
Q 002100 323 SFDPRLVLELLSFANRFCCEELKSACDSYLASMVSDIEDAVML 365 (967)
Q Consensus 323 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~ 365 (967)
+++.+.+.+|+.+|++++++.|.+.|.+.++..+. -.+...+
T Consensus 9 ~~d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~ik-gKt~eei 50 (55)
T d1fs1b1 9 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIK-GKTPEEI 50 (55)
T ss_dssp CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-TCCHHHH
T ss_pred HcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHc-CCCHHHH
Confidence 46788999999999999999999999999999886 3444433
|
| >d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Skp1 dimerisation domain-like superfamily: Skp1 dimerisation domain-like family: Skp1 dimerisation domain-like domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.72 E-value=0.42 Score=36.04 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHhchhChHHHHHHHHHHHHhhCC
Q 002100 323 SFDPRLVLELLSFANRFCCEELKSACDSYLASMVS 357 (967)
Q Consensus 323 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~ 357 (967)
.++.+.+.+|+.+|++++++.|.+.|.+.++..+.
T Consensus 10 ~~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ik 44 (70)
T d1nexa1 10 KVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR 44 (70)
T ss_dssp CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHc
Confidence 46788999999999999999999999999998886
|