Citrus Sinensis ID: 002103

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960------
MASTTVTWSPTSLQLRLALNCWSSSCNSPSVLVRSRFKKLNRPVHLRCFGPSAGRRRGCSLSIRSESNAESFSGWSESGNDGEQSIESQKKGGLGGIVQAGVAGVVLFAGLTFAALSLSKRSTSRPREQMEPLTAAQDVSIVPDHKIDKFEEYGYAGNNVKQDDRSLESKTGTDNALSSSSEAIEVASDNKIDSENETPSTGDVSHSSSGINSINDVAKQDDLQRESASDDMSVAPDTALTSPKLPEPEVVSGTENASPLEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGSKFSRIFSDSSSISSSHAPIEPLAAVISVSSDTTVEPQILPKGDTETVASPSTIKNVEQSEKPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLNESNSSSFTESPPTGSSSSPAGIPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFKT
cccccccccccccEEEEccccccccccccHHHHHHcccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccHHHHHHHHHccccccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccEEEccccccHHHHHHHccccccccccEEEEccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHcccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEccccccccccccHHHHHHHHHHHHHHHccccccccccHHcccccccccccccccccccHHHHHHHHHcccccccccccccccccccccEEcccccccHHHHHHccccccccccccccHHHHHHHcccccHHHccHHHHHHHHHHHHcccHHHHHHHHcccEcccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcHHHHHHHHcccEEHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccc
masttvtwsptSLQLRLALNcwssscnspsvlVRSRfkklnrpvhlrcfgpsagrrrgcslsirsesnaesfsgwsesgndgeqsiesqkkgglggivqAGVAGVVLFAGLTFAALSLskrstsrpreqmepltaaqdvsivpdhkidkfeeygyagnnvkqddrslesktgtdnalssSSEAIEVasdnkidsenetpstgdvshsssginsindvakqddlqresasddmsvapdtaltspklpepevvsgtenasplegsdsildanlpesaseitgenpidvepssfsnptdlgndgskfsrifsdsssissshapiePLAAVIsvssdttvepqilpkgdtetvaspstiknveqsekpllsgedssssmevhdlnkngssgtsvspsifpfsneketcdlnesnsssftespptgsssspagipapSVVSAALQvlpgkvlvpAVVDQVQGQALSALQVLKVIEAdvkpgdlcirREYARWLVSASStltrstmskvypamyienvtdlafdditpedpdfssiqgLAEAGLISsklshrdllneepgpifflpesplsrqDLVSWKMALEKRQLPEANKKILYQLSgfididkinpdawPALLADLTAGEQGIIALAFGctrlfqpdkpvtNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRwerqgikvvvdkdlreeSDAAVMWVNagkqfsvdqTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFKT
masttvtwsptslQLRLALNCWSSSCNSPSVLVRsrfkklnrpvhlrcfgpsagrrrgCSLSIrsesnaesfsgwsesgnDGEQSIESQKKGGLGGIVQAGVAGVVLFAGLTFAALslskrstsrpreqmepltaaqdvsivpDHKIDKFEEYGyagnnvkqddrslesktgtdnalsssseAIEVAsdnkidsenetpstgdvshsssginSINDVAKQDDLQRESASDDMSVAPDTaltspklpepevVSGTENASPLEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGSKFSRIFSDSSSISSSHAPIEPLAAVISVSsdttvepqilpkgdtetvaspstiknveqsekPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLNESNSSSFTESPPTGSSSSPAGIPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWlvsasstltrstmskvYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESfekelsmerekidvVEKMAEEARQELerlraerevdkIALMKERAAIESEMEILSKLRREVEEQLeslmsnkveisyeKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKAlegardrwerqgikvvvdkdlrEESDAAVMWVNagkqfsvdqtvSRAQSLVDKLKAMandvsgkskEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLtegakrvagdcregvekltqrfkt
MASTTVTWSPTSLQLRLALNCWSSSCNSPSVLVRSRFKKLNRPVHLRCFGPSAGRRRGCSLSIRSESNAESFSGWSESGNDGEQSIESQKKgglggivqagvagvvlFAGLTFAALSLSKRSTSRPREQMEPLTAAQDVSIVPDHKIDKFEEYGYAGNNVKQDDRSLESKTGTDNALSSSSEAIEVASDNKIDSENETPSTGDVSHSSSGINSINDVAKQDDLQRESASDDMSVAPDTALTSPKLPEPEVVSGTENASPLEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGskfsrifsdsssisssHAPIEPLAAVISVSSDTTVEPQILPKGDTETVASPSTIKNVEQSEKPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLNESNsssftespptgsssspagipapsvvsaaLQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIeaesaaenavsehsaLVAEVEKEINESFEKELSMEREKIDVVEKMaeearqelerlraereVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFKT
******TWSPTSLQLRLALNCWSSSCNSPSVLVRSRFKKLNRPVHLRCFG*******************************************LGGIVQAGVAGVVLFAGLTFAALS****************************KIDKFEEYGY**************************************************************************************************************************************************************************************************************************************************************************************VVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITP*******IQGLAEAGLI**************GPIFFLPE**LSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIG*********************************************************************************************************************************************************************************WERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKA*********************************************************
*******WSPTSLQLRLALNCWSSSCNSPSVLVRSRFKKLNRPV******************************************************QAGVAGVVLFAGLTFA****************************************************************************************************************************************************************************************************************************************************************************************************************************************PGKVLVPAVVDQVQGQALSALQVL**********DLCIRREYARWLVSASSTLTR**************VTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHR***NEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAA****************************************************************************************************************************************************************************************************************************************************************************************************************************L*Q****
***********SLQLRLALNCWSSSCNSPSVLVRSRFKKLNRPVHLRCFGPSAGRRRGCSLSI****************************GGLGGIVQAGVAGVVLFAGLTFAALSLS************PLTAAQDVSIVPDHKIDKFEEYGYAGNNVKQ***********************************************GINSINDVAKQD**************PDTALTSPKLP*************LEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGSKFSRIFS*********APIEPLAAVISVSSDTTVEPQILPKGDTETVASPSTIK*********************************VSPSIFPFSNEKET*************************IPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIE*************ALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMA***********************RWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFKT
**STTVTWSPTSLQLRLALNCWSSSCNSPSVLVRSRFKKLNRPVHLRCFGPS*****************************************LGGIVQAGVAGVVLFAGLTFAALSL**************************************************************************************************************************************************************************************************************AA***********P*********************************************************************************************************GKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISS************GPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFKT
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASTTVTWSPTSLQLRLALNCWSSSCNSPSVLVRSRFKKLNRPVHLRCFGPSAGRRRGCSLSIRSESNAESFSGWSESGNDGEQSIESQKKGGLGGIVQAGVAGVVLFAGLTFAALSLSKRSTSRPREQMEPLTAAQDVSIVPDHKIDKFEEYGYAGNNVKQDDRSLESKTGTDNALSSSSEAIEVASDNKIDSENETPSTGDVSHSSSGINSINDVAKQDDLQRESASDDMSVAPDTALTSPKLPEPEVVSGTENASPLEGSDSILDANLPESASEITGENPIDVEPSSFSNPTDLGNDGSKFSRIFSDSSSISSSHAPIEPLAAVISVSSDTTVEPQILPKGDTETVASPSTIKNVEQSEKPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLNESNSSSFTESPPTGSSSSPAGIPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKVExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSMAxxxxxxxxxxxxxxxxxxxxxxxxxxxxGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFKT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query966 2.2.26 [Sep-21-2011]
Q8IDX63130 Reticulocyte-binding prot yes no 0.170 0.052 0.246 0.0005
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0198 PE=3 SV=1 Back     alignment and function desciption
 Score = 47.4 bits (111), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 94/195 (48%), Gaps = 30/195 (15%)

Query: 657  EELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELE 716
            EEL+R E E   E    E      E++++  E  +KE +++R++ + ++K  E  RQE E
Sbjct: 2751 EELKRQEQERL-EREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQE 2809

Query: 717  RLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRK 776
            RL  E+              + +++   +L+R+ +E+L+   + K +   E+ER   L+K
Sbjct: 2810 RLEREK--------------QEQLQKEEELKRQEQERLQKEEALKRQ---EQER---LQK 2849

Query: 777  EAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVV 836
            E E + QE  RL      ERK + +A      ++K   +  K +   +D   ++  +++ 
Sbjct: 2850 EEELKRQEQERL------ERKKIELAEREQHIKSKLESDMVKII---KDELTKEKDEIIK 2900

Query: 837  DKDLREESDAAVMWV 851
            +KD++        W+
Sbjct: 2901 NKDIKLRHSLEQKWL 2915
Involved in reticulocyte adhesion.
Plasmodium falciparum (isolate 3D7) (taxid: 36329)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query966
255545258976 conserved hypothetical protein [Ricinus 0.971 0.961 0.572 0.0
356529194975 PREDICTED: uncharacterized protein LOC10 0.974 0.965 0.533 0.0
3565615421002 PREDICTED: uncharacterized protein LOC10 0.969 0.935 0.516 0.0
225464485985 PREDICTED: uncharacterized protein LOC10 0.610 0.598 0.717 0.0
3021438461040 unnamed protein product [Vitis vinifera] 0.610 0.567 0.717 0.0
224134861592 predicted protein [Populus trichocarpa] 0.575 0.939 0.719 0.0
15237846946 uncharacterized protein [Arabidopsis tha 0.954 0.974 0.497 0.0
23397269946 unknown protein [Arabidopsis thaliana] 0.954 0.974 0.496 0.0
224122346793 predicted protein [Populus trichocarpa] 0.578 0.704 0.708 0.0
297808395947 hypothetical protein ARALYDRAFT_489250 [ 0.956 0.975 0.496 0.0
>gi|255545258|ref|XP_002513690.1| conserved hypothetical protein [Ricinus communis] gi|223547598|gb|EEF49093.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  996 bits (2576), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/1004 (57%), Positives = 720/1004 (71%), Gaps = 66/1004 (6%)

Query: 1   MASTTV-TWSPTSLQLRLALNCWSSSC-NSPSVLV-RSRFKKLNRPVHLRC---FGPSAG 54
           MAS+   T SPTSLQLRLALNC    C  SP +L+ ++R  +++R  H  C    G    
Sbjct: 1   MASSMASTCSPTSLQLRLALNC--RKCRGSPVLLILQARATRIDRHSHKLCASHIGYGVQ 58

Query: 55  R-RRGCSLSIRSESNAESFSGWSESGNDGEQSIESQKKGGLGGIVQAGVAGVVLFAGLTF 113
           R R G   +  S + A++F+GW++SG DG+QS+E+QKK  + G+V AGVAG++L AGLTF
Sbjct: 59  RPRYGSPWTASSSAAADNFAGWTDSG-DGDQSVETQKKKWIQGMVGAGVAGIILVAGLTF 117

Query: 114 AALSLSKRSTSRPREQMEPLTAAQDVSIVPDHKIDKFEEYGYAGN--NVKQDDRSLESKT 171
           AALSLSKR+T + ++QMEPLT  Q+VS+V D + DK E+   A +  N+K++  SLE KT
Sbjct: 118 AALSLSKRTTLKTKQQMEPLTVQQEVSLVSDDEEDKIEKNTSAESSANLKEEYISLEHKT 177

Query: 172 GTDNALSSSSEAIEVASDNKIDSENETPSTGDV-SHSSSGINSINDVAKQDDLQRESASD 230
            TD  L SS +  E  ++NK+  + +   + D  ++  S  +++++   Q+DLQ +SA D
Sbjct: 178 NTDVDLPSSPQIEETHNENKLSGDTDQLLSADNGNYIISSNDTVDNAPVQEDLQYDSAFD 237

Query: 231 DMSVAPDTALTSPKLPEPEVVSGTENASPLEGSDSILDANLPESASEITGENPIDVEPSS 290
                 +T   S  LPE ++                +D NL      + GE    +   +
Sbjct: 238 SKLGVLETTPNSTNLPESKIAK--------------IDKNL------VNGEPAYSLNIIN 277

Query: 291 FSNPTDLGNDGSKFSRIFSDSSSISSSHAPIEPLAAVISVSSDTTVEPQILPKGDTETVA 350
                    + +  S   S S  + SS   +  ++  I+++SDT  E   L K   ++ A
Sbjct: 278 TITEHTEAKENTIPSSDSSISPVLKSSEPVV--VSTSITLTSDTVSEVGNLFKDGMDSEA 335

Query: 351 SPSTIKNVEQSEKPLLSGEDSSSSMEVHDLNKNGSSGTSVSPS-IFPFSNEKETC---DL 406
           S  T + +  S   + S + +SSS+E++ L ++GSSG +      +PF+N+++     D+
Sbjct: 336 SVPTKEELNTSTNQV-STDRNSSSLEMNYLTESGSSGVTSVSEWAYPFANKQDIVANDDM 394

Query: 407 NESNSSSFTESPPTGSSSSPAGIPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVL 466
           N S +SS  ESPP   S S AG+PAPS V  +LQV PGK+LVPAVVDQ  GQAL+ALQVL
Sbjct: 395 NLSKTSS--ESPPFSGSFSSAGVPAPSAVPESLQVSPGKILVPAVVDQTHGQALAALQVL 452

Query: 467 KVIEADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPD 526
           KVIEADV+P DLC RREYARWLV+ASS L+RST+SKVYPAMYIEN T+ AFDDITP+DPD
Sbjct: 453 KVIEADVQPSDLCTRREYARWLVAASSALSRSTLSKVYPAMYIENATEPAFDDITPDDPD 512

Query: 527 FSSIQGLAEAGLISSKLSHRDLLN--EEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEA 584
           FSSIQGLAEAGLISS+LS+ DLL+  E+ GP+ F PESPLSRQDLVSWKMALEKRQLPEA
Sbjct: 513 FSSIQGLAEAGLISSRLSNHDLLSPVEDQGPLNFSPESPLSRQDLVSWKMALEKRQLPEA 572

Query: 585 NKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAV 644
           N+KILYQLSGF D+DKI+PDAWPAL+ADL+AG+QGII+LAFGCTRLFQP+KPVT AQAAV
Sbjct: 573 NRKILYQLSGFRDVDKIHPDAWPALIADLSAGDQGIISLAFGCTRLFQPNKPVTKAQAAV 632

Query: 645 ALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVV 704
           ALAIGEASD VNEEL RIEAES AENAVS H+ALVA+VE++IN SFEKEL MEREKI+ V
Sbjct: 633 ALAIGEASDIVNEELARIEAESMAENAVSAHNALVAQVEQDINASFEKELLMEREKINAV 692

Query: 705 EKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEI 764
           EKMAEEAR ELERLRAERE D  ALMKERA+IE+EME+LS+L+ EVEEQL++L+S+KVEI
Sbjct: 693 EKMAEEARLELERLRAEREADNFALMKERASIEAEMEVLSRLKGEVEEQLQTLLSSKVEI 752

Query: 765 SYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGAR 824
           SYEKERIN L+KEAENE QEI+RLQYELEVERKALS+ARAWAEDEAKRARE AK +E AR
Sbjct: 753 SYEKERINKLQKEAENEKQEISRLQYELEVERKALSIARAWAEDEAKRAREHAKVIEEAR 812

Query: 825 DRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKS 884
           DRWERQGIKVVVD DLREE+ A   WV   +QFSV+ TVSRA+ LV +LK +A++  GKS
Sbjct: 813 DRWERQGIKVVVDNDLREETSAGGTWVATARQFSVEGTVSRAEKLVGELKLLADNARGKS 872

Query: 885 KEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQE-------------- 930
           KE+INTII KIL+ IS LK+W S+A  +A ELKDA +LKAK SV+E              
Sbjct: 873 KEVINTIIQKILVIISRLKEWISEARTQAGELKDAAVLKAKESVEELQKNTSEFSSTIKE 932

Query: 931 --------LQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFKT 966
                   LQQSTAEF   + EGAKRVAGDCREGVE+LTQRFK+
Sbjct: 933 RARGSIYGLQQSTAEFSFAMKEGAKRVAGDCREGVERLTQRFKS 976

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356529194|ref|XP_003533181.1| PREDICTED: uncharacterized protein LOC100780360 [Glycine max] Back     alignment and taxonomy information
>gi|356561542|ref|XP_003549040.1| PREDICTED: uncharacterized protein LOC100810148 [Glycine max] Back     alignment and taxonomy information
>gi|225464485|ref|XP_002271744.1| PREDICTED: uncharacterized protein LOC100264485 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143846|emb|CBI22707.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224134861|ref|XP_002321923.1| predicted protein [Populus trichocarpa] gi|222868919|gb|EEF06050.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15237846|ref|NP_197777.1| uncharacterized protein [Arabidopsis thaliana] gi|10176856|dbj|BAB10062.1| unnamed protein product [Arabidopsis thaliana] gi|332005846|gb|AED93229.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|23397269|gb|AAN31916.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224122346|ref|XP_002318812.1| predicted protein [Populus trichocarpa] gi|222859485|gb|EEE97032.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297808395|ref|XP_002872081.1| hypothetical protein ARALYDRAFT_489250 [Arabidopsis lyrata subsp. lyrata] gi|297317918|gb|EFH48340.1| hypothetical protein ARALYDRAFT_489250 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query966
TAIR|locus:2172853946 AT5G23890 [Arabidopsis thalian 0.939 0.959 0.443 1.6e-182
TAIR|locus:2156687761 AT5G52410 [Arabidopsis thalian 0.540 0.685 0.569 4.1e-162
TAIR|locus:2102375558 AT3G25680 "AT3G25680" [Arabido 0.396 0.686 0.343 3.4e-55
CGD|CAL0003874 1404 PGA55 [Candida albicans (taxid 0.353 0.242 0.197 1.1e-06
UNIPROTKB|Q59SG9 1404 PGA55 "Flocculin-like protein" 0.353 0.242 0.197 1.1e-06
POMBASE|SPAC29E6.10c 1085 SPAC29E6.10c "conserved fungal 0.275 0.245 0.214 5.3e-06
SGD|S000001800406 SRP40 "Nucleolar serine-rich p 0.333 0.793 0.214 6.1e-06
UNIPROTKB|Q9NZW41301 DSPP "Dentin sialophosphoprote 0.358 0.265 0.199 7.1e-06
MGI|MGI:2684999 1091 Tmf1 "TATA element modulatory 0.225 0.199 0.252 7.3e-06
MGI|MGI:109172934 Dspp "dentin sialophosphoprote 0.353 0.365 0.201 1e-05
TAIR|locus:2172853 AT5G23890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1771 (628.5 bits), Expect = 1.6e-182, P = 1.6e-182
 Identities = 433/976 (44%), Positives = 596/976 (61%)

Query:    22 WSSSCNSPSVLVRSRFKKLNRPVHLRCFGPSA-GRRRGCSL---SIRSESNAESFSGWSE 77
             W+ +     + + S  ++ +  V+LR   PS   R+ G  +   S + E +A + S  S+
Sbjct:     8 WTPTSLQLRLALSSGVRRKSPAVYLR---PSRLARKSGYGIVCVSQKPEVDAWTGSDSSK 64

Query:    78 SGNDG-----EQSIESQKKXXXXXXXXXXXXXXXXFAGLT-FAALSLSKRSTSR--PREQ 129
             S  D      +   + +K                  AG+  F  LS +  S S+   +++
Sbjct:    65 SSADNLAGWDDSDNDDKKSSRVKKKSLIEGVVGAGVAGIILFLGLSYAAASFSKRTKKQE 124

Query:   130 MEPLTAAQDVSIVPDHKI--DKFEEYGYAGNNVKQDDRSLESKTGTDNALSSSSEAIEVA 187
             M  LT+ Q+  I    +I  D+ +      +N+K +D+S+ES     N ++  S+  E +
Sbjct:   125 MHSLTSQQESMIQSSDEISSDEIKVANSEESNLKDEDKSIES-----NDVAQKSD--EGS 177

Query:   188 SDNKIDSENETPSTGDVSHSSSGINSINDVAKQDDLQRESASDDMSVAPDTALTSPKLPE 247
              ++K+  +  +   G ++  +    SI     + DL   + +D     P+TA  S K   
Sbjct:   178 GEDKLLGKETSSFDGVMTDEADATESIPQNTPEADLMVNAETD-----PETA-ESEK--- 228

Query:   248 PEVVSGTENASPLEGSDS--ILDANLPESASEITGENPIDVEPSSFSN--PT---DLGND 300
               ++S  E+ S L+ S    +LDA   ES++ +  EN    +P S  N  PT   DL N 
Sbjct:   229 --IIS--ESKSLLDSSTEPILLDA---ESSNLVGVENTNSEDPESLLNTEPTNVSDLENH 281

Query:   301 GXXXXXXXXXXXXXXXXHAPIEPLAAVISVSS--DTTVEPQILPKGDTETV-ASPSTIKN 357
                              +A    +  +  VSS  D+T +PQI+P  DTET  A+   +  
Sbjct:   282 VNSQKEDSLSSLSGIDAYAASGTVTELPEVSSQLDSTSKPQIVPLNDTETAFATAEELSE 341

Query:   358 VEQSEKPLLSGEDSSSSMEVHDLNKNGSSGTSVSPSIFPFSNEKETCDLN-ESNXXXXXX 416
             V  + +   + + SS S    D++      +S SP   P S +    +LN  S       
Sbjct:   342 VNGTPEYFETSDWSSIS----DIDTTKELESSKSP--VPESTDGSKDELNIYSQDELDDN 395

Query:   417 XXXXXXXXXXXXXXXXXXXXXXLQVL--PGKVLVPAVVDQVQGQALSALQVLKVIEADVK 474
                                   + V+  PGK+LVP   DQ+Q QA +ALQVLKVIE D +
Sbjct:   396 RMLLEIPSGGSAFSSAGIPAPFMSVIVNPGKILVPVAADQIQCQAFAALQVLKVIETDTQ 455

Query:   475 PGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLA 534
             P DLC RREYARWL+SASS L+R+T SKVYPAMYIENVT+LAFDDITPEDPDFSSIQGLA
Sbjct:   456 PSDLCTRREYARWLISASSALSRNTTSKVYPAMYIENVTELAFDDITPEDPDFSSIQGLA 515

Query:   535 EAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSG 594
             EAGLI+SKLS+RDLL++  G   F PES LSRQDL+SWKMALEKRQLPEA+KK+LY+LSG
Sbjct:   516 EAGLIASKLSNRDLLDDVEGTFLFSPESLLSRQDLISWKMALEKRQLPEADKKMLYKLSG 575

Query:   595 FIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDA 654
             FIDIDKINPDAWP+++ADL+ GEQGI ALAFGCTRLFQP KPVT  QAA+AL+ GEASD 
Sbjct:   576 FIDIDKINPDAWPSIIADLSTGEQGIAALAFGCTRLFQPHKPVTKGQAAIALSSGEASDI 635

Query:   655 VNEELQRIXXXXXXXXXXXXXXXLVAEVEKEINESFEKELSMEREKIDVVEKMXXXXXXX 714
             V+EEL RI               LVAEVEK++N SFEKELSMEREKI+ VEKM       
Sbjct:   636 VSEELARIEAESMAEKAVSAHNALVAEVEKDVNASFEKELSMEREKIEAVEKMAELAKVE 695

Query:   715 XXXXXXXXXVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINML 774
                       + +AL+KERAA+ESEME+LS+LRR+ EE+LE LMSNK EI++EKER+  L
Sbjct:   696 LEQLREKREEENLALVKERAAVESEMEVLSRLRRDAEEKLEDLMSNKAEITFEKERVFNL 755

Query:   775 RKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKV 834
             RKEAE E+Q I++LQYELEVERKALSMAR+WAE+EAK+AREQ +ALE AR RWE  G++V
Sbjct:   756 RKEAEEESQRISKLQYELEVERKALSMARSWAEEEAKKAREQGRALEEARKRWETNGLRV 815

Query:   835 VVDKDLRE----ESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINT 890
             VVDKDL+E    E++ +++ +N  ++ SV++T  RA++L+DKLK MA  VSGKS+E+I T
Sbjct:   816 VVDKDLQETSSRETEQSIV-LNEMERSSVEETERRAKTLMDKLKEMAGTVSGKSREVIFT 874

Query:   891 IIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVA 950
             ++ KI L+I+ LK++A     RA E++DA I++AKG+  +++Q T +    +++  K++A
Sbjct:   875 VMEKIRLWITVLKEYAVNLGKRAGEMRDAAIVRAKGAAADVEQGTVQ----VSDKVKKMA 930

Query:   951 GDCREGVEKLTQRFKT 966
              +CR+GV K++QRFKT
Sbjct:   931 EECRDGVGKISQRFKT 946
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009536 "plastid" evidence=IDA
TAIR|locus:2156687 AT5G52410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102375 AT3G25680 "AT3G25680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
CGD|CAL0003874 PGA55 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59SG9 PGA55 "Flocculin-like protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
POMBASE|SPAC29E6.10c SPAC29E6.10c "conserved fungal protein" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000001800 SRP40 "Nucleolar serine-rich protein" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NZW4 DSPP "Dentin sialophosphoprotein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2684999 Tmf1 "TATA element modulatory factor 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
MGI|MGI:109172 Dspp "dentin sialophosphoprotein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_XV3389
hypothetical protein (592 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query966
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 8e-10
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-09
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-09
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-09
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 6e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-07
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 4e-07
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 6e-07
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 6e-07
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-06
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 1e-06
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 1e-06
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 1e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-06
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 4e-06
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 4e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 9e-06
COG1579239 COG1579, COG1579, Zn-ribbon protein, possibly nucl 1e-05
TIGR01843423 TIGR01843, type_I_hlyD, type I secretion membrane 2e-05
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 3e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-05
PRK12704 520 PRK12704, PRK12704, phosphodiesterase; Provisional 6e-05
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 6e-05
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 7e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 8e-05
COG2433652 COG2433, COG2433, Uncharacterized conserved protei 9e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-04
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 1e-04
pfam05262489 pfam05262, Borrelia_P83, Borrelia P83/100 protein 1e-04
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 2e-04
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 2e-04
pfam12128 1198 pfam12128, DUF3584, Protein of unknown function (D 2e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
COG3096 1480 COG3096, MukB, Uncharacterized protein involved in 4e-04
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 5e-04
PRK00409782 PRK00409, PRK00409, recombination and DNA strand e 5e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-04
COG1579239 COG1579, COG1579, Zn-ribbon protein, possibly nucl 7e-04
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 8e-04
COG4372 499 COG4372, COG4372, Uncharacterized protein conserve 8e-04
TIGR02680 1353 TIGR02680, TIGR02680, TIGR02680 family protein 9e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.001
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 0.001
PRK04778569 PRK04778, PRK04778, septation ring formation regul 0.001
TIGR03319 514 TIGR03319, RNase_Y, ribonuclease Y 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 0.002
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 0.002
COG4372 499 COG4372, COG4372, Uncharacterized protein conserve 0.002
PTZ00491850 PTZ00491, PTZ00491, major vault protein; Provision 0.002
pfam135141118 pfam13514, AAA_27, AAA domain 0.002
TIGR01069771 TIGR01069, mutS2, MutS2 family protein 0.002
COG5185622 COG5185, HEC1, Protein involved in chromosome segr 0.002
pfam10174 774 pfam10174, Cast, RIM-binding protein of the cytoma 0.002
cd01046123 cd01046, Rubrerythrin_like, rubrerythrin-like, dii 0.002
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.003
pfam01576 859 pfam01576, Myosin_tail_1, Myosin tail 0.003
pfam00769244 pfam00769, ERM, Ezrin/radixin/moesin family 0.003
TIGR04211198 TIGR04211, SH3_and_anchor, SH3 domain protein 0.004
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information 
 Score = 62.8 bits (153), Expect = 8e-10
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 652 SDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEA 711
             A+ ++L R+EAE             +A++ KE+ E  E E+    E+++  E+   EA
Sbjct: 728 ISALRKDLARLEAEVEQ------LEERIAQLSKELTE-LEAEIEELEERLEEAEEELAEA 780

Query: 712 RQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERI 771
             E+E L A+ E  K  L   R A++     L+ L  E     E L S +  I+  + R+
Sbjct: 781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840

Query: 772 NMLRKEAENENQEIARLQY----------ELEVERKALSMARAWAEDEAKRAREQAKALE 821
             L ++ E  +++I  L            ELE E +AL   RA  E+     R + + L 
Sbjct: 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900

Query: 822 GARDRWERQ 830
                 E +
Sbjct: 901 EELRELESK 909

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional Back     alignment and domain information
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain Back     alignment and domain information
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein Back     alignment and domain information
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone Back     alignment and domain information
>gnl|CDD|153105 cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail Back     alignment and domain information
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family Back     alignment and domain information
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 966
PF0039545 SLH: S-layer homology domain; InterPro: IPR001119 98.88
PF0039545 SLH: S-layer homology domain; InterPro: IPR001119 97.65
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 96.43
KOG0018 1141 consensus Structural maintenance of chromosome pro 96.22
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 96.12
TIGR03185 650 DNA_S_dndD DNA sulfur modification protein DndD. T 96.11
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 95.22
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 95.06
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 94.68
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 94.62
COG4942420 Membrane-bound metallopeptidase [Cell division and 94.41
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 94.37
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 94.13
PRK00106 535 hypothetical protein; Provisional 94.07
PRK00106 535 hypothetical protein; Provisional 93.81
PRK12704 520 phosphodiesterase; Provisional 93.62
PF12072201 DUF3552: Domain of unknown function (DUF3552); Int 93.6
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 92.56
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 92.22
TIGR03319 514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 92.21
PRK11637428 AmiB activator; Provisional 91.54
PF10186302 Atg14: UV radiation resistance protein and autopha 91.32
PRK12704 520 phosphodiesterase; Provisional 90.96
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 90.9
TIGR03319 514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 90.54
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 90.48
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 90.34
KOG4673 961 consensus Transcription factor TMF, TATA element m 90.13
KOG0933 1174 consensus Structural maintenance of chromosome pro 90.1
KOG4302 660 consensus Microtubule-associated protein essential 90.08
PTZ00121 2084 MAEBL; Provisional 89.99
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 89.75
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 89.29
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 88.55
TIGR01069771 mutS2 MutS2 family protein. Function of MutS2 is u 88.36
PF10186302 Atg14: UV radiation resistance protein and autopha 87.8
PTZ00121 2084 MAEBL; Provisional 87.44
KOG05791187 consensus Ste20-like serine/threonine protein kina 87.28
PF05701522 WEMBL: Weak chloroplast movement under blue light; 87.25
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 87.15
PRK11637428 AmiB activator; Provisional 86.87
KOG0996 1293 consensus Structural maintenance of chromosome pro 86.44
PLN031881320 kinesin-12 family protein; Provisional 86.31
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 86.2
PF00038312 Filament: Intermediate filament protein; InterPro: 86.2
PRK02224 880 chromosome segregation protein; Provisional 86.19
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 86.08
KOG3850455 consensus Predicted membrane protein [Function unk 85.83
PHA02562562 46 endonuclease subunit; Provisional 85.81
KOG2685421 consensus Cystoskeletal protein Tektin [Cytoskelet 85.77
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 84.52
TIGR00634563 recN DNA repair protein RecN. All proteins in this 84.5
PRK00409782 recombination and DNA strand exchange inhibitor pr 84.5
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 84.15
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 83.98
PTZ00266 1021 NIMA-related protein kinase; Provisional 83.72
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 83.27
PF12072201 DUF3552: Domain of unknown function (DUF3552); Int 82.79
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 82.78
PRK12705 508 hypothetical protein; Provisional 82.51
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 82.02
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 81.12
PRK09039343 hypothetical protein; Validated 80.7
PRK04863 1486 mukB cell division protein MukB; Provisional 80.51
>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ] Back     alignment and domain information 
Probab=98.88  E-value=1.6e-09  Score=85.56  Aligned_cols=44  Identities=27%  Similarity=0.430  Sum_probs=31.6

Q ss_pred             CccCCCCCCCCh-HHHHHHHHcCCcccCcccccCCCCCCCCCccCCCCcCcHHHHH
Q 002103          516 AFDDITPEDPDF-SSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLV  570 (966)
Q Consensus       516 aF~DVppsDPDF-~yIQaAAEAGII~GkLSG~~~~s~ddG~~tFrPD~PITRQELA  570 (966)
                      .|+||+..+|+| .+|+.|++.|||.|+.+           ++|+|+++|||+|||
T Consensus         1 ~F~Dv~~~~~~~a~~i~~~~~~gi~~G~~~-----------~~f~P~~~iTR~e~A   45 (45)
T PF00395_consen    1 PFKDVPSISWAYAEAIQWLYQLGIISGYSD-----------GTFNPNDPITRAEAA   45 (45)
T ss_dssp             -BTTB-TTSSSTTHHHHHHHHTTSS---TT-----------S---TTSB-BHHHHH
T ss_pred             CCCCCCCCcHHHHHHHHHHHHcCCcccCCC-----------CeECCCCCcCHHHhC
Confidence            499999999965 99999999999999853           379999999999986

Several S-layer proteins and some other cell wall proteins contain one or more copies of a domain of about 50-60 residues, which has been called SLH (for S-layer homology). Although it was originally proposed that SLH domains bind to peptidoglycan, it is now evident that pyruvylated secondary cell wall polymers (SCWPs), which are either teichoic acids, teichuronic acids, lipoteichoic acids or lipoglycans, serve as the anchoring structures for SLH motifs in the Gram-positive cell wall [, ]. However, the study of S-layer protein SbpA of Bacillus sphaericus revealed that SLH motifs are not sufficient for specific binding to SCWPs. Thus, the molecular basis explaining SLH affinity and specificity of interaction with cell wall polymers are not completely elucidated [].; PDB: 3PYW_A.
>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR01069 mutS2 MutS2 family protein Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG3850 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PTZ00266 NIMA-related protein kinase; Provisional Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query966
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-12
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-11
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-07
2zuo_A861 MVP, major vault protein; repeat domains, protein- 2e-09
2zuo_A861 MVP, major vault protein; repeat domains, protein- 2e-08
2zuo_A861 MVP, major vault protein; repeat domains, protein- 1e-06
2zuo_A861 MVP, major vault protein; repeat domains, protein- 9e-05
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 6e-07
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 2e-05
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 9e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 6e-06
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 2e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 3e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 2e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 1e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 1e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 4e-04
1cii_A 602 Colicin IA; bacteriocin, ION channel formation, tr 5e-05
2qag_B427 Septin-6, protein NEDD5; cell cycle, cell division 5e-05
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 9e-05
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 1e-04
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 1e-04
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 4e-04
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 1e-04
2i1j_A575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 4e-04
3pyw_A203 S-layer protein SAP; SLH-domains, polysaccharide b 5e-04
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 5e-04
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 7e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 70.6 bits (173), Expect = 2e-12
 Identities = 39/199 (19%), Positives = 90/199 (45%), Gaps = 8/199 (4%)

Query: 650  EASDAVNEELQRIEAE-SAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMA 708
            +    + ++  ++  E    E  VS+ +  +AE E++     + +   E    ++  ++ 
Sbjct: 990  DDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLK 1049

Query: 709  EE--ARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISY 766
            +E  +RQELE+++ + E +   L ++ A +++++  L     + EE+L++ ++    +  
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA---RLED 1106

Query: 767  EKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDR 826
            E  + N   K+       I+ LQ +LE E+ A + A     D ++        LE   D 
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDT 1166

Query: 827  WERQGIKVVVDKDLREESD 845
               Q  + +   D +++ D
Sbjct: 1167 TATQ--QELRGSDYKDDDD 1183
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 Length = 602 Back     alignment and structure
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 Back     alignment and structure
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-2, protein structure initiative; 1.80A {Bacillus anthracis} Length = 203 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query966
3pyw_A203 S-layer protein SAP; SLH-domains, polysaccharide b 99.94
4aq1_A 892 SBSB protein; structural protein, S-layer protein, 99.83
3pyw_A203 S-layer protein SAP; SLH-domains, polysaccharide b 99.7
4aq1_A 892 SBSB protein; structural protein, S-layer protein, 99.3
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 94.18
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 93.49
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 92.55
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 91.63
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 91.47
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 90.82
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 90.47
2no2_A107 HIP-I, huntingtin-interacting protein 1; clathrin 90.31
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 88.79
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 88.33
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 84.98
2i1j_A575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 82.6
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 82.13
3k29_A169 Putative uncharacterized protein; YSCO, type III s 81.42
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-biology, protein structure initiative; 1.80A {Bacillus anthracis} Back     alignment and structure
Probab=99.94  E-value=3.6e-26  Score=224.59  Aligned_cols=157  Identities=20%  Similarity=0.163  Sum_probs=126.7

Q ss_pred             hhHHHHHhccceeccC-CccCCCCCccHHHHHHHHHHhhccccccccccccccccccCCCCCCccCCCCCCCChHHHHHH
Q 002103          455 VQGQALSALQVLKVIE-ADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGL  533 (966)
Q Consensus       455 ~qieaLAaLgVLkIiE-g~F~PnepITRaEFARWLVrA~n~L~Rnp~srV~Pa~~isgste~aF~DVppsDPDF~yIQaA  533 (966)
                      .+++.|..+|++.+++ +.|+|+++|||+|||.||+++++.          +.   .......|+||+ +||++.+|+.|
T Consensus        16 ~~I~~l~~~gii~G~~dg~F~P~~~iTR~e~a~~l~r~~~~----------~~---~~~~~~~F~Dv~-~~w~~~~i~~a   81 (203)
T 3pyw_A           16 DSINYLVEKGAVKGNDKGMFEPGKELTRAEAATMMAQILNL----------PI---DKDAKPSFADSQ-GQWYTPFIAAV   81 (203)
T ss_dssp             HHHHHHHHTTSCCCCTTSCCCTTCBCBHHHHHHHHHHHTTC----------CC---CTTCCCSCGGGC-SSTTHHHHHHH
T ss_pred             HHHHHHHHCcCEecCCCCeECCCCCchHHHHHHHHHHHhCC----------CC---CcCCCCCCCCCC-cHHHHHHHHHH
Confidence            3688899999999997 789999999999999999999871          11   122346899995 99999999999


Q ss_pred             HHcCCcccCcccccCCCCCCCCCccCCCCcCcHHHHHHHHH-HhhccCCChhhhhhhhccccccccCCCCcccHHHHHHH
Q 002103          534 AEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKM-ALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLAD  612 (966)
Q Consensus       534 AEAGII~GkLSG~~~~s~ddG~~tFrPD~PITRQELAsWKV-ALe~~~LPead~k~L~~~~gF~D~dkI~~~A~~AV~aD  612 (966)
                      +++|||.|+.           ++ |+|+++|||+||+.|.+ ++++......     .....|.|...| .|+..+|...
T Consensus        82 ~~~Gii~g~~-----------~~-F~P~~~iTR~e~a~~l~r~~~~~~~~~~-----~~~~~f~D~~~i-~wa~~~v~~~  143 (203)
T 3pyw_A           82 EKAGVIKGTG-----------NG-FEPNGKIDRVSMASLLVEAYKLDTKVNG-----TPATKFKDLETL-NWGKEKANIL  143 (203)
T ss_dssp             HHTTSSCCCS-----------SC-CCTTSBCBHHHHHHHHHHHHTGGGGSSS-----CCCCCCHHHHTC-SSSHHHHHHH
T ss_pred             HHCcCeecCC-----------CC-CCCCCcccHHHHHHHHHHHhcccccccc-----ccCCCCCCCCcc-HHHHHHHHHH
Confidence            9999999983           34 99999999999999876 5654421110     124579999999 8999999766


Q ss_pred             HhcccccceecccCCCCccCCCCCCcHHHHHHHHHhc
Q 002103          613 LTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIG  649 (966)
Q Consensus       613 L~aGDqgIIr~vFG~T~~FQPnKPVTRAEAAAaL~~G  649 (966)
                      ...   ||+.+   +.+.|+|++++||+|||++|++-
T Consensus       144 ~~~---Gi~~g---~~~~f~P~~~iTRaE~A~~l~r~  174 (203)
T 3pyw_A          144 VEL---GISVG---TGDQWEPKKTVTKAEAAQFIAKT  174 (203)
T ss_dssp             HHT---TCSCC---CSSCCCTTSBCBHHHHHHHHHHH
T ss_pred             HHC---cCEeC---CCCCcCCCCCCcHHHHHHHHHHH
Confidence            654   57755   44689999999999999999964
>4aq1_A SBSB protein; structural protein, S-layer protein, nanobody; 2.42A {Geobacillus stearothermophilus} PDB: 4aq1_C Back     alignment and structure
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-biology, protein structure initiative; 1.80A {Bacillus anthracis} Back     alignment and structure
>4aq1_A SBSB protein; structural protein, S-layer protein, nanobody; 2.42A {Geobacillus stearothermophilus} PDB: 4aq1_C Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 966
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 4e-07
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 3e-04
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 0.002
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 6e-05
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 4e-04
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00