Citrus Sinensis ID: 002104
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 966 | 2.2.26 [Sep-21-2011] | |||||||
| O35231 | 824 | Kinesin-like protein KIFC | no | no | 0.346 | 0.406 | 0.440 | 5e-72 | |
| O81635 | 987 | Kinesin-4 OS=Arabidopsis | no | no | 0.359 | 0.351 | 0.427 | 7e-71 | |
| Q9BVG8 | 833 | Kinesin-like protein KIFC | no | no | 0.346 | 0.402 | 0.434 | 1e-70 | |
| P46864 | 745 | Kinesin-2 OS=Arabidopsis | no | no | 0.351 | 0.456 | 0.409 | 2e-69 | |
| F4JGP4 | 790 | Kinesin-5 OS=Arabidopsis | no | no | 0.369 | 0.451 | 0.397 | 1e-68 | |
| P46875 | 754 | Kinesin-3 OS=Arabidopsis | no | no | 0.351 | 0.450 | 0.409 | 1e-67 | |
| Q07970 | 793 | Kinesin-1 OS=Arabidopsis | no | no | 0.367 | 0.447 | 0.401 | 2e-67 | |
| Q9FHN8 | 1260 | Kinesin-like calmodulin-b | no | no | 0.391 | 0.3 | 0.379 | 2e-66 | |
| Q7XPJ0 | 1248 | Kinesin-like calmodulin-b | no | no | 0.359 | 0.278 | 0.391 | 6e-65 | |
| P45962 | 598 | Kinesin-like protein klp- | yes | no | 0.341 | 0.551 | 0.387 | 2e-62 |
| >sp|O35231|KIFC3_MOUSE Kinesin-like protein KIFC3 OS=Mus musculus GN=Kifc3 PE=1 SV=4 | Back alignment and function desciption |
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Score = 273 bits (698), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 152/345 (44%), Positives = 211/345 (61%), Gaps = 10/345 (2%)
Query: 89 RRQILNEFLDSKGNIRVFCRIRPISM--GENFGRLRPV-IAKDSSNVLLKLADNKSKNYS 145
R++ NE + KGNIRV R+RP++ GE V D +++ L K ++
Sbjct: 430 RKKCHNELVRLKGNIRVIARVRPVTKEDGEGPEATNAVTFDPDDDSIIHLLHKGKPVSFE 489
Query: 146 FDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRA 205
DKVF P +SQ +VF EV+ +I S +DG+N CIFAYGQTG GK++TMEGTP++PGI RA
Sbjct: 490 LDKVFSPWASQQDVFQEVQALITSCIDGFNVCIFAYGQTGAGKTYTMEGTPENPGINQRA 549
Query: 206 IEAIFKQAME--SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGI 263
++ +F + E S+ + I+ S EIY L+DLL +P + + + + + G +
Sbjct: 550 LQLLFSEVQEKASDWQYNITVSAAEIYNEVLRDLLGKEPQEKLE-----IRLCPDGSGQL 604
Query: 264 EIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRRE 323
+ L QV + +++ G R+T TN N SSRSH ++ +++ D R
Sbjct: 605 YVPGLTEFQVQSVDDINKVFEFGYNNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRT 664
Query: 324 KNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLT 383
K+ LVDL GSERV K+ A G RL E + IN SLSALGDVI AL+ R+ HVP+RNSKLT
Sbjct: 665 TGKLNLVDLAGSERVGKSGAEGNRLREAQHINRSLSALGDVIAALRSRQGHVPFRNSKLT 724
Query: 384 QVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLG 428
+L+DSL DSKTLM+V VSP E + ET+ SL FA RV+SV LG
Sbjct: 725 YLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLRFAERVRSVELG 769
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Minus-end microtubule-dependent motor protein. Involved in apically targeted transport. Required for zonula adherens maintenance. Mus musculus (taxid: 10090) |
| >sp|O81635|ATK4_ARATH Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9BVG8|KIFC3_HUMAN Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=4 | Back alignment and function description |
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| >sp|P46864|ATK2_ARATH Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=1 | Back alignment and function description |
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| >sp|F4JGP4|ATK5_ARATH Kinesin-5 OS=Arabidopsis thaliana GN=ATK5 PE=2 SV=1 | Back alignment and function description |
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| >sp|P46875|ATK3_ARATH Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q07970|ATK1_ARATH Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9FHN8|KCBP_ARATH Kinesin-like calmodulin-binding protein OS=Arabidopsis thaliana GN=KCBP PE=1 SV=1 | Back alignment and function description |
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| >sp|Q7XPJ0|KCBP_ORYSJ Kinesin-like calmodulin-binding protein homolog OS=Oryza sativa subsp. japonica GN=Os04g0666900 PE=2 SV=1 | Back alignment and function description |
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| >sp|P45962|KLP3_CAEEL Kinesin-like protein klp-3 OS=Caenorhabditis elegans GN=klp-3 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 966 | ||||||
| 359478824 | 962 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.983 | 0.588 | 0.0 | |
| 255564782 | 945 | kinesin, putative [Ricinus communis] gi| | 0.973 | 0.994 | 0.585 | 0.0 | |
| 297746518 | 994 | unnamed protein product [Vitis vinifera] | 0.930 | 0.904 | 0.589 | 0.0 | |
| 147774373 | 1824 | hypothetical protein VITISV_041202 [Viti | 0.931 | 0.493 | 0.564 | 0.0 | |
| 224075954 | 827 | predicted protein [Populus trichocarpa] | 0.802 | 0.937 | 0.581 | 0.0 | |
| 224056919 | 645 | predicted protein [Populus trichocarpa] | 0.662 | 0.992 | 0.68 | 0.0 | |
| 4204259 | 887 | Similar to Kinesin proteins [Arabidopsis | 0.874 | 0.952 | 0.441 | 0.0 | |
| 186491181 | 859 | P-loop containing nucleoside triphosphat | 0.706 | 0.793 | 0.501 | 0.0 | |
| 297847924 | 855 | hypothetical protein ARALYDRAFT_474616 [ | 0.703 | 0.795 | 0.506 | 0.0 | |
| 357129893 | 830 | PREDICTED: uncharacterized protein LOC10 | 0.673 | 0.784 | 0.474 | 1e-153 |
| >gi|359478824|ref|XP_002283784.2| PREDICTED: uncharacterized protein LOC100257047 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1065 bits (2755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/977 (58%), Positives = 711/977 (72%), Gaps = 31/977 (3%)
Query: 4 MDSKQSVHKLGETIHSLLGLKAHLTSSWVKSVCDIVKNLPSTD-----IKGKKLETQCS- 57
MD+++ V L E+I SLLGLKA+LTSSW SV DI+K+LPS + IK K ET S
Sbjct: 1 MDTRKPVGNLAESIRSLLGLKANLTSSWADSVSDIIKSLPSEEPRTDRIKPAKSETTNSF 60
Query: 58 EIKEIDSGPTISGIKDELATLSACINQLNIQRRQILNEFLDSKGNIRVFCRIRPISMGEN 117
+ KE++SG I +KDELA L+A INQLNIQRRQ+LNEFLD KGNIRVFCRIRPI++GEN
Sbjct: 61 DDKEVNSGTIILKLKDELAALTAYINQLNIQRRQVLNEFLDLKGNIRVFCRIRPITVGEN 120
Query: 118 FGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNAC 177
L V+ DSSN LLKLA+NKSK YSFDKVFHPGSSQD+VF EVEPVIK+ LDGYNAC
Sbjct: 121 SSHLSTVVTLDSSNALLKLAENKSKRYSFDKVFHPGSSQDDVFLEVEPVIKTALDGYNAC 180
Query: 178 IFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDL 237
IFAYGQTGTGK++TMEGTPD PG+VPRA+E +FKQA++SNHAF SFSMLEIYLG+LKDL
Sbjct: 181 IFAYGQTGTGKTYTMEGTPDCPGVVPRAMEVLFKQAVDSNHAFLFSFSMLEIYLGNLKDL 240
Query: 238 LVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNS 297
LV Q TK TDPLPP LS+HT+PKGGIEIDNLV+IQV+DFNQAL LYRLG RFRSTASTNS
Sbjct: 241 LVPQSTKVTDPLPPSLSVHTDPKGGIEIDNLVSIQVSDFNQALSLYRLGRRFRSTASTNS 300
Query: 298 NRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLS 357
N SSRSHCMIRI++TC DAPERRRE NKIW+VDLGGSERVLKTKA GRRL+EGKAINLS
Sbjct: 301 NIASSRSHCMIRITMTCSDAPERRRETNKIWMVDLGGSERVLKTKASGRRLEEGKAINLS 360
Query: 358 LSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLN 417
LSALG VI ALQR++RH+PYRNSKLTQVLKDSLGEDSKTLMLVHVSPKE+DLCET+CSLN
Sbjct: 361 LSALGHVINALQRKRRHIPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEEDLCETVCSLN 420
Query: 418 FATRVKSVHLGHEDSNEARDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRP 477
FATRV+S+HL E+S E RDQKE++M NLQQK++ IE ER +R +I+ L+E+LE LTR
Sbjct: 421 FATRVRSIHLVSEESTEIRDQKELAMTNLQQKIEWIEAERQNIRRKIDKLNERLENLTRT 480
Query: 478 AHSFQEQLEVSHSS-EEPLSNLKCKKNKVDDVKVAPMSQLPRFMSATLCSRRKSGIHLHN 536
S EQLE SH S EEP S ++ N+ DV AP+ ++PRFM T+CSRRKSGI N
Sbjct: 481 ISSSNEQLEASHPSMEEPQSKVEIISNRTGDVTAAPIPRIPRFMRPTICSRRKSGIDHEN 540
Query: 537 SEGKDRA-IRRKRPSSHRAESVTFPVKNKSEYNSEHSISRSSCLVGLNVKNSADYETEYS 595
SE K A RR++ S AESV+FPVK SEY+S+HSISR+SCL GLN+K SAD ETEYS
Sbjct: 541 SEKKGPASARRRKALSRHAESVSFPVKGISEYSSDHSISRTSCLAGLNLKCSADNETEYS 600
Query: 596 QETLDCDVKIETFLEQDRSQRTSIRQGAPPGYLEKCGSRKTGKFNTKKFSKVDDWL-LHK 654
Q+T +CDVK+ F E++ R+SIR+ A + E+CG+RKT K ++ KFSKVD+WL LHK
Sbjct: 601 QDTSECDVKMVVFPERENLLRSSIRKKAHFSHTEECGNRKTDKLDSTKFSKVDNWLHLHK 660
Query: 655 NEPTIAGFTHRSKRVLTIPIPGKKHRGREPSTAERLCNGPVPAYEFTAENTASLNKMKKQ 714
NEPTI + HRSK+VL IP P KK + +E+L + V E A NT + ++++K
Sbjct: 661 NEPTIRSYMHRSKQVLAIPNPEKKDECNGQNISEKLQDDKVHNQEH-AINTIADHQIEK- 718
Query: 715 FDVKGDELS---IPEVITERPLPMLKDLFEMDSRLDFISSSHTTVGQTVIQMQDFRDRLL 771
+ GD ++ I EV ++ + LKD + + + SH T G +IQ Q D L
Sbjct: 719 --LTGDGVAGTFISEVAIDKTVSELKDFISKNPNPNSVYPSHATDGTNMIQTQGLVDGPL 776
Query: 772 IDDNNTSS-TPSLPDICCGTLNQYRDDDELYTMSIMQPVKGELYCSESMLRNGG--CTFS 828
++++ T TP P++ C Q D+ + + I Q + G+ CS++ + N C F
Sbjct: 777 VEEDKTGPFTP--PEVLCVRFIQ-NTDNRMKGIPINQEITGKTQCSDTFMLNNSNCCHFY 833
Query: 829 PSESDNSTVGSKGDSGVSVSISDLDSLCEQASTEIGVNDNEEEELDASFEPFPMETRPSP 888
P + DN ++ DS VS SIS+L S C Q + V D E+E L S + + TR
Sbjct: 834 PPDMDNGSIDLIEDSDVSTSISELKSHCPQVPSN-SVEDAEKESLCVSSQHLEIGTRSCL 892
Query: 889 LTLRSQRALFMNEVNQKDLNMHQKDLNMPYILSQGSTHSEGTCYVLKKKIQILFASALLG 948
RSQRALFM+ KDL M + SQG+ + G C +LK+KI+I +ASALLG
Sbjct: 893 HRFRSQRALFMDTTKPKDLTMF-------FDESQGNMGT-GICDLLKQKIRIFYASALLG 944
Query: 949 LGLYDLGFDNDFFHGLM 965
LG +LGF+++FF+GLM
Sbjct: 945 LGFENLGFEHEFFYGLM 961
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564782|ref|XP_002523385.1| kinesin, putative [Ricinus communis] gi|223537335|gb|EEF38964.1| kinesin, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|297746518|emb|CBI16574.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147774373|emb|CAN72398.1| hypothetical protein VITISV_041202 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224075954|ref|XP_002304845.1| predicted protein [Populus trichocarpa] gi|222842277|gb|EEE79824.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224056919|ref|XP_002299089.1| predicted protein [Populus trichocarpa] gi|222846347|gb|EEE83894.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|4204259|gb|AAD10640.1| Similar to Kinesin proteins [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|186491181|ref|NP_564696.2| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|332195144|gb|AEE33265.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297847924|ref|XP_002891843.1| hypothetical protein ARALYDRAFT_474616 [Arabidopsis lyrata subsp. lyrata] gi|297337685|gb|EFH68102.1| hypothetical protein ARALYDRAFT_474616 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|357129893|ref|XP_003566594.1| PREDICTED: uncharacterized protein LOC100824487 [Brachypodium distachyon] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 966 | ||||||
| TAIR|locus:2193914 | 859 | AT1G55550 [Arabidopsis thalian | 0.734 | 0.826 | 0.471 | 3e-165 | |
| TAIR|locus:2143759 | 625 | AT5G27950 [Arabidopsis thalian | 0.508 | 0.785 | 0.401 | 5.3e-95 | |
| ZFIN|ZDB-GENE-030131-3724 | 937 | kifc3 "kinesin family member C | 0.378 | 0.390 | 0.389 | 1.1e-63 | |
| UNIPROTKB|F1P0D6 | 371 | KIFC3 "Uncharacterized protein | 0.364 | 0.948 | 0.408 | 2.7e-62 | |
| TAIR|locus:2136437 | 745 | ATK2 "kinesin 2" [Arabidopsis | 0.351 | 0.456 | 0.387 | 6.6e-62 | |
| UNIPROTKB|F1P110 | 399 | KIFC3 "Uncharacterized protein | 0.341 | 0.827 | 0.426 | 1.1e-61 | |
| MGI|MGI:109202 | 824 | Kifc3 "kinesin family member C | 0.346 | 0.406 | 0.414 | 1.1e-61 | |
| UNIPROTKB|F1LPW9 | 824 | Kifc3 "Protein Kifc3" [Rattus | 0.346 | 0.406 | 0.414 | 1.1e-61 | |
| UNIPROTKB|E2QS65 | 764 | KIFC3 "Uncharacterized protein | 0.346 | 0.438 | 0.414 | 5.5e-61 | |
| UNIPROTKB|F6UN94 | 842 | KIFC3 "Uncharacterized protein | 0.346 | 0.397 | 0.414 | 5.5e-61 |
| TAIR|locus:2193914 AT1G55550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1608 (571.1 bits), Expect = 3.0e-165, P = 3.0e-165
Identities = 359/761 (47%), Positives = 479/761 (62%)
Query: 1 MKNMDSKQSVHKLGETIHSLLGLKAHLTSSWVKSVCDIVKNLPSTDIKGKKLETQCSEIK 60
M+ SK V L ETIHSLLGLK+H+TS WVKSVC+I KN ST KK E +
Sbjct: 1 MERTRSKP-VRNLPETIHSLLGLKSHMTSDWVKSVCNIAKNTSSTS---KKEE---DDFV 53
Query: 61 EIDSGPTISGIKDELATLSACINQLNIQRRQILNEFLDSKGNIRVFCRIRPISMGENFGR 120
+D + I+D+L+ L+ +N N RRQILNEFLD KGNIRVFCR++P+ E +
Sbjct: 54 SVD----LQSIRDQLSALTVQVNDQNKLRRQILNEFLDLKGNIRVFCRVKPLGATE---K 106
Query: 121 LRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFA 180
LRP +A D+ NV++KL++ K K Y+FD+VF P SSQD+VF E+EPVIKSV+DGYNACIFA
Sbjct: 107 LRPPVASDTRNVIIKLSETKRKTYNFDRVFQPDSSQDDVFLEIEPVIKSVIDGYNACIFA 166
Query: 181 YGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVT 240
YGQTGTGK++TMEG P+SPGIVPRAI+ +FKQ ESNH F I FSMLEIY+G+LKDLL++
Sbjct: 167 YGQTGTGKTYTMEGLPNSPGIVPRAIKGLFKQVEESNHMFTIHFSMLEIYMGNLKDLLLS 226
Query: 241 QPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXX 300
+ TK P+PP LSIHT+P G I+I+NLV ++V+DFN+ LRLY++GCR
Sbjct: 227 EATKPISPIPPSLSIHTDPNGEIDIENLVKLKVDDFNEILRLYKVGCRSRATASTNSNSV 286
Query: 301 XXXXHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSA 360
HCMIR+S+T APERRRE NKIWLVDLGGSERVLKT+A GRR DEGKAINLSLSA
Sbjct: 287 SSRSHCMIRVSVTSLGAPERRRETNKIWLVDLGGSERVLKTRATGRRFDEGKAINLSLSA 346
Query: 361 LGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFAT 420
LGDVI +LQR+ H+PYRNSKLTQVLKDSLG+DSKTLMLVH+SPKEDDLCETICSLNFAT
Sbjct: 347 LGDVINSLQRKNSHIPYRNSKLTQVLKDSLGQDSKTLMLVHISPKEDDLCETICSLNFAT 406
Query: 421 RVKSVHLGHEDSNEARDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHS 480
R K++HLG ++S E + +KE M NLQ+ M+KIE+ER ++ NL+E LE LT H
Sbjct: 407 RAKNIHLGQDESTEEQAKKEAVMMNLQKMMEKIEQEREMSLRKMRNLNETLEKLTGKPHV 466
Query: 481 FQEQLEVSHSSEEPLSNLXXXXXXXXXXXXAPMSQL-PRFMSATLCS-RRKSGIHLHNSE 538
+E+ ++ + + S + P FM T S RR SG +
Sbjct: 467 IEEE------EKDVVREVIHVTPKKPRNKSRRASDVFPSFMRPTASSNRRLSGADFSVTP 520
Query: 539 GKDR-AIRRKRPSSHRAESVTFPVKNKSEY------NSEHSISRSSCLVGLNVKNSADYE 591
RR S RAES PVK K +S+ S+S+S+ ++ +N+AD
Sbjct: 521 NSSSFKSRRNSMISVRAESACLPVKKKKNRFDSACDSSDRSVSKSTSIMR---QNTADDA 577
Query: 592 TEYSQETLDCDVKIETFLEQDRSQR----TSIRQGAPPGYLEKCGSRKTGKFNTKKFSKV 647
T YSQ+ +CD+K+ + + + ++ + + EK +K G T+ FS++
Sbjct: 578 TVYSQDISECDIKLVVSEHKPKPLQMGPGSATKSRSNISNFEKDVMQKIG--GTE-FSRI 634
Query: 648 DDWLLHKNEPTIAGFTHRSKRVLTIPIPGKKHRGREPS-----TAERLCNGPVPAYEFTA 702
+ WL ++E + ++ +R E S T E++ + E T
Sbjct: 635 NSWLRSQSENR--SYVLDKTQLPATHFLENLNRSLEKSPTQSFTTEKITGNELEGIEETK 692
Query: 703 ENTASLNK---MKKQFDVKG--DELSIPEVITERPLPMLKD 738
N +N +KK F+++ ++++ P+P +D
Sbjct: 693 TNETVVNPTLMLKKLFELQCLCSAEEEDQILSRFPIPGYED 733
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| TAIR|locus:2143759 AT5G27950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-030131-3724 kifc3 "kinesin family member C3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1P0D6 KIFC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| TAIR|locus:2136437 ATK2 "kinesin 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1P110 KIFC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| MGI|MGI:109202 Kifc3 "kinesin family member C3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1LPW9 Kifc3 "Protein Kifc3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2QS65 KIFC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F6UN94 KIFC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00024860001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (935 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 966 | |||
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 1e-159 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 1e-117 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 1e-116 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 1e-113 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 1e-92 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 1e-81 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 6e-79 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 2e-78 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 5e-78 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 1e-77 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 4e-74 | |
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 6e-72 | |
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 3e-67 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 6e-66 | |
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 1e-65 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 1e-65 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 5e-57 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 3e-42 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 6e-31 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 1e-18 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 5e-06 |
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
Score = 471 bits (1215), Expect = e-159
Identities = 166/335 (49%), Positives = 223/335 (66%), Gaps = 12/335 (3%)
Query: 100 KGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLA--DNKSKNYSFDKVFHPGSSQD 157
KGNIRVFCR+RP+ E+ + D ++L+ K K++SFD+VF P +SQ+
Sbjct: 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQE 60
Query: 158 EVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESN 217
+VF EV P+++S LDGYN CIFAYGQTG+GK++TMEG P++PGI+PRA+E +F A E
Sbjct: 61 DVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELK 120
Query: 218 ---HAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPC-LSIHTEPKGGIEIDNLVTIQV 273
++ I+ SMLEIY +++DLL AT P P L I + KG + NL + V
Sbjct: 121 EKGWSYTITASMLEIYNETIRDLL------ATKPAPKKKLEIKHDSKGETYVTNLTEVPV 174
Query: 274 NDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLG 333
+ + RL LG + RS ASTN N SSRSH + ++ I + + + K+ LVDL
Sbjct: 175 SSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLA 234
Query: 334 GSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGED 393
GSER+ K+ A G RL E +AIN SLSALGDVI AL+ + HVPYRNSKLT +L+DSLG +
Sbjct: 235 GSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGN 294
Query: 394 SKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLG 428
SKTLM V++SP E +L ET+CSL FA+RV+SV LG
Sbjct: 295 SKTLMFVNISPLESNLSETLCSLRFASRVRSVELG 329
|
Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329 |
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 966 | |||
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 100.0 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG4280 | 574 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0245 | 1221 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 100.0 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| KOG0242 | 675 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| KOG0241 | 1714 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0247 | 809 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 98.72 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 94.52 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 94.42 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 91.66 | |
| PRK06620 | 214 | hypothetical protein; Validated | 91.39 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 90.1 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 90.08 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 89.83 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 89.73 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 89.31 | |
| PRK12377 | 248 | putative replication protein; Provisional | 89.09 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 89.0 | |
| PRK08116 | 268 | hypothetical protein; Validated | 88.75 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 88.35 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 87.83 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 87.54 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 87.46 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 87.31 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 86.91 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 86.86 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 86.62 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 86.1 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 85.88 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 85.76 | |
| PRK09087 | 226 | hypothetical protein; Validated | 85.69 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 84.97 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 83.08 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 82.85 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 81.96 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 81.43 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 80.86 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 80.69 |
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-86 Score=774.53 Aligned_cols=355 Identities=47% Similarity=0.737 Sum_probs=320.7
Q ss_pred HHHHHHHHHHHH---HHHHHHHhhhhhhccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCC-ceEEEeCCCCCc----e
Q 002104 72 KDELATLSACIN---QLNIQRRQILNEFLDSKGNIRVFCRIRPISMGENFGRLRPVIAKDSS-NVLLKLADNKSK----N 143 (966)
Q Consensus 72 ~~El~~l~~~~~---~~~~eRk~L~N~l~elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~-~v~l~~~~~k~k----~ 143 (966)
..++..+...+. ..+.+||+|||+|+|+||||||||||||+.+.+.......++..++. .+.+.......+ .
T Consensus 282 ~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (670)
T KOG0239|consen 282 QSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQS 361 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCcccc
Confidence 344444433333 44589999999999999999999999999998876544445555443 344444333332 4
Q ss_pred eecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceeccc-CCCCCCcHHHHHHHHHHHHHh--cCCee
Q 002104 144 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG-TPDSPGIVPRAIEAIFKQAME--SNHAF 220 (966)
Q Consensus 144 F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G-~~e~pGIIPRale~LF~~i~e--~~~~f 220 (966)
|.||+||+|.++|++||.++.|+|+++|||||+||||||||||||||||.| +++++|||||+++.||..+.. .+|.|
T Consensus 362 f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y 441 (670)
T KOG0239|consen 362 FKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKY 441 (670)
T ss_pred ceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceE
Confidence 999999999999999999999999999999999999999999999999999 799999999999999998754 36899
Q ss_pred EEEEEEEEEecceeecccCCCCCCCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccCCCC
Q 002104 221 RISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRT 300 (966)
Q Consensus 221 ~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~ 300 (966)
.+.+||+|||||.|+|||.+.. .+..+.|++++++..+|.+++.+.|.+.+++..+++.|..+|++++|.+|++
T Consensus 442 ~~~~s~~EIYNe~i~DlL~~~~------~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~ 515 (670)
T KOG0239|consen 442 DKTVSMLEIYNEAIRDLLSDES------YVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNER 515 (670)
T ss_pred EeeeehhHHHHHHHHHhccccc------cccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchh
Confidence 9999999999999999998764 2346899999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEEEEecCCcCccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCCCCC
Q 002104 301 SSRSHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNS 380 (966)
Q Consensus 301 SSRSH~IftI~I~~~n~~~~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPYRdS 380 (966)
|||||+||+|+|...+...+....+.|+|||||||||+.++++.|+|++|+++||+||++||+||.||+.+..|||||||
T Consensus 516 SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNS 595 (670)
T KOG0239|consen 516 SSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNS 595 (670)
T ss_pred hhccceEEEEEEeccccCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCccccc
Confidence 99999999999999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCcceeEEEecCCCCCCHHHHHHHHHHHHHhhhcccCcCCc
Q 002104 381 KLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDS 432 (966)
Q Consensus 381 KLTrLLqDSLGGNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l~~~~~ 432 (966)
|||+|||+||||++||+|+|+|||...++.||+++|+||+|++.+.+|+...
T Consensus 596 KLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 596 KLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred chHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccc
Confidence 9999999999999999999999999999999999999999999999988653
|
|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4280 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0245 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >KOG0242 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >KOG0241 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0247 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 966 | ||||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 1e-63 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 1e-61 | ||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 1e-61 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 4e-56 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 4e-56 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 1e-55 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 2e-55 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 3e-55 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 4e-53 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-49 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 7e-49 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 2e-48 | ||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 8e-48 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 3e-47 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 3e-47 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 3e-47 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 2e-46 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 1e-45 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 3e-45 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 3e-45 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 5e-44 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 2e-43 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 2e-43 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 2e-43 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 3e-43 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 3e-43 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 3e-43 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 3e-43 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 4e-43 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 4e-43 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 6e-43 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-42 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 3e-42 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 6e-42 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 2e-41 | ||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-41 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 3e-41 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 4e-41 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 2e-39 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 2e-39 | ||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-38 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 8e-38 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 4e-37 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 8e-37 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 2e-35 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 3e-35 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 3e-35 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 4e-35 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 2e-26 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 2e-26 | ||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 7e-26 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 4e-25 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 5e-25 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 1e-24 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 5e-22 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 1e-21 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 4e-10 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 5e-10 |
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
|
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 465 bits (1199), Expect = e-157
Identities = 145/334 (43%), Positives = 202/334 (60%), Gaps = 10/334 (2%)
Query: 99 SKGNIRVFCRIRPISMGENFGRLRPVIAK---DSSNVLLKLADNKSKNYSFDKVFHPGSS 155
SKGNIRV R+RP++ + G D +++ L K ++ DKVF P +S
Sbjct: 2 SKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQAS 61
Query: 156 QDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFK--QA 213
Q +VF EV+ ++ S +DG+N CIFAYGQTG GK++TMEGT ++PGI RA++ +F Q
Sbjct: 62 QQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQE 121
Query: 214 MESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQV 273
S+ + I+ S EIY L+DLL +P + + + + + G + + L QV
Sbjct: 122 KASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLE-----IRLCPDGSGQLYVPGLTEFQV 176
Query: 274 NDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLG 333
+ +++ G R+T TN N SSRSH ++ +++ D R K+ LVDL
Sbjct: 177 QSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLA 236
Query: 334 GSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGED 393
GSERV K+ A G RL E + IN SLSALGDVI AL+ R+ HVP+RNSKLT +L+DSL D
Sbjct: 237 GSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGD 296
Query: 394 SKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 427
SKTLM+V VSP E + ET+ SL FA RV+SV L
Sbjct: 297 SKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 966 | |||
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 100.0 | |
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 100.0 | |
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 100.0 | |
| 2rep_A | 376 | Kinesin-like protein KIFC1; structural genomics co | 100.0 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 100.0 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 100.0 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 100.0 | |
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 100.0 | |
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 100.0 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 100.0 | |
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 100.0 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 100.0 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 100.0 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 100.0 | |
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 100.0 | |
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 100.0 | |
| 2owm_A | 443 | Nckin3-434, related to kinesin-like protein KIF1C; | 100.0 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 100.0 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 100.0 | |
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 100.0 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 100.0 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 100.0 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 100.0 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 1ry6_A | 360 | Internal kinesin; kinesin motor domain, nucleotide | 100.0 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 100.0 | |
| 4h1g_A | 715 | Maltose binding protein-cakar3 motor domain fusio; | 100.0 | |
| 2o0a_A | 298 | S.cerevisiae chromosome XVI reading frame ORF YPL2 | 99.97 | |
| 3kin_B | 117 | Kinesin heavy chain; motor protein, cytoskeleton; | 99.93 | |
| 2kin_B | 100 | Kinesin; motor protein, cytoskeleton; HET: ADP; 2. | 99.93 | |
| 4etp_B | 333 | Spindle POLE BODY-associated protein VIK1; kinesin | 97.99 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 94.47 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 93.47 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 91.82 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 91.13 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 90.32 | |
| 4gkp_A | 275 | Spindle POLE BODY-associated protein VIK1; kinesin | 89.12 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 86.72 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 86.43 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 85.52 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 85.01 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 84.25 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 83.48 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 83.02 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 82.91 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 82.73 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 81.47 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 80.72 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 80.39 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 80.31 |
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-90 Score=779.69 Aligned_cols=358 Identities=40% Similarity=0.580 Sum_probs=304.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeCCC------C
Q 002104 67 TISGIKDELATLSACINQLNIQRRQILNEFLDSKGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADN------K 140 (966)
Q Consensus 67 ~i~~l~~El~~l~~~~~~~~~eRk~L~N~l~elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~~~------k 140 (966)
.+.+++.|++.+.+++.+++.+||+|||+++|++|||||||||||+...|.......+...+...+.+..... .
T Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 104 (412)
T 3u06_A 25 CNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMG 104 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccC
Confidence 4677888889999999999999999999999999999999999999988865443334445555555443221 2
Q ss_pred CceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHh---cC
Q 002104 141 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME---SN 217 (966)
Q Consensus 141 ~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e---~~ 217 (966)
.+.|.||+||+++++|++||+.|.|+|+++|+|||+||||||||||||||||+|.++++|||||++++||..+.. ..
T Consensus 105 ~~~F~FD~VF~~~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~ 184 (412)
T 3u06_A 105 QQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLG 184 (412)
T ss_dssp CCEEECSEEECTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGT
T ss_pred ceEEeeCeEcCCCCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999998854 35
Q ss_pred CeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhcccccccccccC
Q 002104 218 HAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNS 297 (966)
Q Consensus 218 ~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~ 297 (966)
+.|.|+|||+|||||+|+|||.+... +..+.+.+++.++++|.|++++.|.++++++.+|..|.++|++++|.+
T Consensus 185 ~~~~v~vS~~EIYnE~i~DLL~~~~~------~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~ 258 (412)
T 3u06_A 185 WEYEIKATFLEIYNEVLYDLLSNEQK------DMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAG 258 (412)
T ss_dssp EEEEEEEEEEEEETTEEEETTCCSCC------CCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----C
T ss_pred ceEEEEEEEEEEeCCeeEEcCCCCCC------CceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCC
Confidence 78999999999999999999965432 123556678899999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEEEEecCCcCccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCCCCC
Q 002104 298 NRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 377 (966)
Q Consensus 298 N~~SSRSH~IftI~I~~~n~~~~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~hIPY 377 (966)
|..|||||+||+|+|.+.+........|+|+|||||||||.. .|.|++|+.+||+||++||+||.||+.++.||||
T Consensus 259 N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPy 334 (412)
T 3u06_A 259 NERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPY 334 (412)
T ss_dssp HHHHTTCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTCSCCCG
T ss_pred CCCCcCceEEEEEEEEEEeCCCCCEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccCCCCCc
Confidence 999999999999999988877777788999999999999974 4689999999999999999999999999999999
Q ss_pred CCCccccccccccCCCcceeEEEecCCCCCCHHHHHHHHHHHHHhhhcccCcCCchh
Q 002104 378 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDSNE 434 (966)
Q Consensus 378 RdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~I~l~~~~~~~ 434 (966)
||||||+||||||||||+|+|||||||+..+++||++||+||+||++|++++...+.
T Consensus 335 RdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~~~~n~ 391 (412)
T 3u06_A 335 RNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 391 (412)
T ss_dssp GGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC-------
T ss_pred cccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhcccccccccc
Confidence 999999999999999999999999999999999999999999999999987765443
|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
| >4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} | Back alignment and structure |
|---|
| >2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A | Back alignment and structure |
|---|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 966 | ||||
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 2e-76 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 3e-75 | |
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 2e-73 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 5e-73 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 2e-71 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 1e-70 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 2e-69 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 8e-68 | |
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 3e-66 |
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens) [TaxId: 9606]
Score = 250 bits (640), Expect = 2e-76
Identities = 122/333 (36%), Positives = 183/333 (54%), Gaps = 18/333 (5%)
Query: 99 SKGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDE 158
++ NI+V CR RP++ E + + + ++ SK Y+FD+VF +SQ++
Sbjct: 3 AECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVV----IASKPYAFDRVFQSSTSQEQ 58
Query: 159 VFSE-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSP---GIVPRAIEAIFKQAM 214
V+++ + ++K VL+GYN IFAYGQT +GK+ TMEG P GI+PR ++ IF
Sbjct: 59 VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIY 118
Query: 215 --ESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQ 272
+ N F I S EIYL ++DLL D LS+H + +
Sbjct: 119 SMDENLEFHIKVSYFEIYLDKIRDLL--------DVSKTNLSVHEDKNRVPYVKGCTERF 170
Query: 273 VNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDL 332
V ++ + G R A TN N SSRSH + I++ + ++ K++LVDL
Sbjct: 171 VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDL 230
Query: 333 GGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGE 392
GSE+V KT A G LDE K IN SLSALG+VI AL +VPYR+SK+T++L+DSLG
Sbjct: 231 AGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGG 290
Query: 393 DSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 425
+ +T +++ SP + ET +L F R K++
Sbjct: 291 NCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 323
|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 966 | |||
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.03 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 88.35 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 88.19 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.01 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 87.35 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 85.84 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 85.57 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 84.47 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 83.2 |
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin motor Ncd (non-claret disjunctional) species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=4e-83 Score=705.11 Aligned_cols=352 Identities=40% Similarity=0.577 Sum_probs=311.2
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEeC------
Q 002104 64 SGPTISGIKDELATLSACINQLNIQRRQILNEFLDSKGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLA------ 137 (966)
Q Consensus 64 ~~~~i~~l~~El~~l~~~~~~~~~eRk~L~N~l~elkGnIRV~~RVRPl~~~E~~~~~~~vv~~d~~~v~l~~~------ 137 (966)
+...+.++..|+..+.+++.+.+.+||+|||+++|+||||||||||||++..|.......++..+...+.+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gnIkV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~ 87 (368)
T d2ncda_ 8 LLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKS 87 (368)
T ss_dssp GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCGGGTTSCBCEEEEETTTEEEEECSCHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCEEEEEEeCCCCchhcCCCCcEEEeCCCCeEEEccCCccccC
Confidence 33457788889999999999999999999999999999999999999999888655555555666666555432
Q ss_pred CCCCceeecceeeCCCCChHHHHHhhHHHHHHHhcCCcccEEeeccCCCCcceecccCCCCCCcHHHHHHHHHHHHHh--
Q 002104 138 DNKSKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME-- 215 (966)
Q Consensus 138 ~~k~k~F~FD~VF~p~asQedVF~eV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G~~e~pGIIPRale~LF~~i~e-- 215 (966)
....+.|.||+||+++++|++||+.|.|+|+++++|||+||||||||||||||||+|+++++||+||++++||..+..
T Consensus 88 ~~~~~~F~FD~vf~~~~~Q~~Vy~~v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~~~~~Giipr~~~~Lf~~~~~~~ 167 (368)
T d2ncda_ 88 KMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYR 167 (368)
T ss_dssp TTCCCEEECSEEECTTCCHHHHHTTTHHHHHHHHTTCEEEEEEECSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHH
T ss_pred CcCceeeECCeEECCCCCccchHHHHHHHHHHHhcccceeEEeeccCCCccceEecccccccchhhHHHHHHhhhhhhhc
Confidence 234578999999999999999998899999999999999999999999999999999999999999999999998753
Q ss_pred -cCCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcceeeecCCCcEEecCcEEEEecCHHHHHHHHHhccccccccc
Q 002104 216 -SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTAS 294 (966)
Q Consensus 216 -~~~~f~VsVS~lEIYNE~V~DLL~~~~~~~~~~~~~~L~Ired~~ggv~V~gLtev~V~S~eE~l~LL~~G~~nR~tas 294 (966)
....|.|.+||+|||||+|+|||++.... ....+++++.+++++.|++++.|.+++++..++..|.++|.++.
T Consensus 168 ~~~~~~~v~vS~~EIyne~i~DLL~~~~~~------~~~~~~~d~~~~~~v~g~~~~~v~~~~~~~~~l~~g~~~r~~~~ 241 (368)
T d2ncda_ 168 NLGWEYEIKATFLEIYNEVLYDLLSNEQKD------MEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATAS 241 (368)
T ss_dssp TTSCEEEEEEEEEEESSSCEEETTCSSCCC------CCEEECTTCTTCEEETTCCCEEECSHHHHHHHHHHHHHHSCCCS
T ss_pred cccccceEEEEEEEEecceeeccccccccc------ccceeeccccccccccccceeccCCHHHHHHHHHHHHhhccccc
Confidence 45689999999999999999999875432 23567789999999999999999999999999999999999999
Q ss_pred ccCCCCCCCceeEEEEEEEEecCCcCccccceeEEEeccCCcccccccccchhHHHHHHhhhhHHHHHHHHHHHhhCCCC
Q 002104 295 TNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRH 374 (966)
Q Consensus 295 T~~N~~SSRSH~IftI~I~~~n~~~~~~~~SKL~LVDLAGSER~~kt~a~G~rlkEa~~INkSLsALG~VI~ALs~k~~h 374 (966)
|.+|..|||||+||+|+|...+........|+|+||||||+|+.. .+.+++|+.+||+||++|++||.||++++.|
T Consensus 242 t~~n~~ssrSh~i~~i~v~~~~~~~~~~~~s~l~~VDLAGse~~~----~~~~~~E~~~IN~SL~aL~~vi~aL~~~~~~ 317 (368)
T d2ncda_ 242 TAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDH 317 (368)
T ss_dssp SSCTTTTTTCEEEEEEEEEEECTTSCCEEEEEEEEEECCCCCCC--------------CTTHHHHHHHHHHHHHHTTCSC
T ss_pred ccccccccccceEEEEEEEEEecCCCceEeeeeeeeeeccccccc----hhhhhcccccchhhHHHHHHHHHHHhcCCCC
Confidence 999999999999999999998887777889999999999999865 3678999999999999999999999999999
Q ss_pred CCCCCCccccccccccCCCcceeEEEecCCCCCCHHHHHHHHHHHHHhhhc
Q 002104 375 VPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 425 (966)
Q Consensus 375 IPYRdSKLTrLLqDSLGGNSKTlMIa~ISPs~~~~eETLsTLrFAsRaK~I 425 (966)
||||+||||+||+|+|||||+|+||+||||+..+++||++||+||+|||++
T Consensus 318 iPyR~SkLT~lL~dsLggns~t~mI~~isp~~~~~~eTl~TL~fa~rak~~ 368 (368)
T d2ncda_ 318 IPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSC 368 (368)
T ss_dssp CCGGGSHHHHHHGGGSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHHHHhcCCCCeEEEEEEECCChhhHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999974
|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|