Citrus Sinensis ID: 002105

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960------
Protein Sequence
MANNSILFMFLFLSFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGNDLCGGDSTSGLPPCKGNKKNQTWWLVVACFLAVLIMLALAAFAITVIRGKKILELKRVENEDGIWEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISSCVSGLKFSSPV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccccccEEccccccEEEEEccccccEEEccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEccccccccccccccccccccccccccccccEEccccccccccccccccccccEEEEcccHHHHccccccEEEccccEEEEEccHHHHccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccccccEEEccccEEEEcccHHHHcccccccEEccccEEEEcccccccccccccEEEccccEEEEcccHHHHccccccEEEccccccccccccccccccccccEEcccccccccccHHHHHcccccEEcccccccccccHHHHcccccccEEcccccccccccHHHHccccccEEccccccccccccHHccccccccccccccccccccccccHHccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccccccHHHHHHccccccEEEccccccccEEEEEEcccccEEEEEEEccccccccccHHHHHHHHHccccccccccEEEEEEcccccEEEEcccccccHHHHHccccHHHHHHHHHHHHHHHcccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHcccccccEEEcccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccEEEEEcccccEEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHcccccEEEcccccccccccHHcHHcccEEEcccccccccccHHHccccccEEEEcEEccEEccccHHHHHcccccEEEEEEEcccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEEcccccccccHHHcccccEEEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEccccEEccEHHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEEccccccccccccccHccccHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHcccccEEEccccEEEEEEEEcccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccccEEccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccHEHHHHHHHHHHcccccccccccccccHHHHHHHHHccccHHHHccHHHccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
MANNSILFMFLFLSFCTCHGAELELLLSFkstvndpynflsnwdSSVTFCKwngiscqnsthVNAIELSAKnisgkisssifhlphvesinlssnqlsgeipsdifsssnslrflnlsnnnftgpvpigslsrLEILDLsnnmlsgkipeeigsfsglkvldlggnvlvgeiplsisnITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYnnlsgeipkeigdltslnhLDLVYnnltgqippsfgnlsnlRYLFLYQNkltgsipksiLGLKSLvsfdlsdnylsgeipeEVIQLQNLEILHLFsnnftgkipsslasmpkLQVLQLWSnqfsgeipsnlgkqnnltvidlstnfltgkipetlcdsgslfKLILFSnslegkipnslstCKSLRRVRLQNnrlsgelsseftrlpLVYFLdisgndlsgrigeqKWEMTSLQMLNLAgnnfsgklpdsfgsdqlenldlsenrfsgtiprsfgRLSELMQLKISRnklfgdipeelSSCKKLVSLDlsnnqlsghipaslsempvlgqldlsenqlsgkipqtlGRVASLVQVNIshnhfhgslpstgaFLAINATAvagndlcggdstsglppckgnkknqTWWLVVACFLAVLIMLALAAFAITVIRGKKILELKrvenedgiwEVQFFnskvgksltIDEIISStteenltsrgkkgvsssyKVRSLANDMQFVVKKIIDvntittssfwpdvsqfgklimhpnivrlhgvcrseKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHfhcspsvvagdvspgkvivdgkdephlrlsvpglayctdsksinssayvapetkeskditekgdiyGFGLILIDLltgkspadadfgvHESIVEWARYCysdchldtwvdpfirGHVSSIQNEIVEIMNLALhctagdptarpcasdvTKTLESCFRisscvsglkfsspv
Flexible Loop (DISEMBL)
MANNSILFMFLFLSFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNnrlsgelsseftrLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGNDLCGGDSTSGLPPCKGNKKNQTWWLVVACFLAVLIMLALAAFAITVIRGKKILELKrvenedgiwevqffnskvgksltIDEIIsstteenltsrgkkgvsssykvrslandMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSpsvvagdvsPGKVIVDGKDEPHLRLSVPglayctdsksinssayvapetkeskditekgdIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFrisscvsglkfsspv
Low Complexity Region (SEG)
MANNSILFMFLFLSFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIfsssnslrflnlsnnnfTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGNDLCGGDSTSGLPPCKGNKKNQTWWLVVACFLAVLIMLALAAFAITVIRGKKILELKRVENEDGIWEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISSCVSGLKFSSPV
Disordered region (IsUnstruct)
****SILFMFLFLSFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESIN********************LRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGN********************************FGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLD********************************KIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGNDLCGGDSTSGLPPCKGNKKNQTWWLVVACFLAVLIMLALAAFAITVIRGKKILELKRVENEDGIWEVQFFNSKVGKSLTIDEII********************KVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS******************ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISSCVSGL******
Disordered Region (DISOPRED)
*ANNSILFMFLFLSFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGNDLCGG**********************ACFLAVLIMLALAAFAITVIRG********************FNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKII************DVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE***********L******
Disordered Region (DISEMBL)
MANNSILFMFLFLSFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGNDLCGGDSTSGLPPCKGNKKNQTWWLVVACFLAVLIMLALAAFAITVIRGKKILELKRVENEDGIWEVQFFNSKVGKSLTIDEIISST*****************KVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA**********DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISSCVSGLKFSSPV
Disordered Region (DISPRO)
MANNSILFMFLFLSFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGNDLCGGDSTSGLPPCKG*KKNQTWWLVVACFLAVLIMLALAAFAITVIRGKKILELKRV***DGIWEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCF***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MANNSILFMFLFLSFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGNDLCGGDSTSGLPPCKGNKKNQTWWLVVACFLAVLIMLALAAFAITVIRGKKILELKRVENEDGIWEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISSCVSGLKFSSPV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	966	2.2.26 [Sep-21-2011]
O82318	960	Probably inactive leucine	yes	no	0.942	0.947	0.553	0.0
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.955	0.911	0.353	1e-153
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.946	0.912	0.370	1e-153
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.959	0.900	0.348	1e-149
O49545	1003	Leucine-rich repeat recep	no	no	0.942	0.907	0.352	1e-145
O65440	992	Leucine-rich repeat recep	no	no	0.935	0.911	0.353	1e-141
Q9SYQ8	980	Receptor protein kinase C	no	no	0.914	0.901	0.329	1e-136
C0LGX3	993	LRR receptor-like serine/	no	no	0.931	0.906	0.339	1e-133
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.932	0.862	0.339	1e-130
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.944	0.827	0.336	1e-129

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  998 bits (2581), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/955 (55%), Positives = 679/955 (71%), Gaps = 45/955 (4%)

Query: 8   FMFLFLSFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVT--FCKWNGISCQNSTHVNA 65
             FLFL+F   H  ELELLLSFKS++ DP   LS+W  S T   C W+G+ C N + V +
Sbjct: 17  LFFLFLNFSCLHANELELLLSFKSSIQDPLKHLSSWSYSSTNDVCLWSGVVCNNISRVVS 76

Query: 66  IELSAKNISGKI-SSSIFHLPHVESINLSSNQLSGEIPSDIFSSSN-SLRFLNLSNNNFT 123
           ++LS KN+SG+I +++ F LP +++INLS+N LSG IP DIF++S+ SLR+LNLSNNNF+
Sbjct: 77  LDLSGKNMSGQILTAATFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFS 136

Query: 124 GPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQ 183
           G +P G L  L  LDLSNNM +G+I  +IG FS L+VLDLGGNVL G +P  + N++ L+
Sbjct: 137 GSIPRGFLPNLYTLDLSNNMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVPGYLGNLSRLE 196

Query: 184 IFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQ 243
             TLASNQL G +P E+G+++NLKWIYLGYNNLSGEIP +IG L+SLNHLDLVYNNL+G 
Sbjct: 197 FLTLASNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGP 256

Query: 244 IPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLE 303
           IPPS G+L  L Y+FLYQNKL+G IP SI  L++L+S D SDN LSGEIPE V Q+Q+LE
Sbjct: 257 IPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPELVAQMQSLE 316

Query: 304 ILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGK 363
           ILHLFSNN TGKIP  + S+P+L+VLQLWSN+FSG IP+NLGK NNLTV+DLSTN LTGK
Sbjct: 317 ILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLTGK 376

Query: 364 IPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVY 423
           +P+TLCDSG L KLILFSNSL+ +IP SL  C+SL RVRLQNN  SG+L   FT+L LV 
Sbjct: 377 LPDTLCDSGHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNGFSGKLPRGFTKLQLVN 436

Query: 424 FLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTI 483
           FLD+S N+L G I    W+M  L+ML+L+ N F G+LPD   S +L+ LDLS N+ SG +
Sbjct: 437 FLDLSNNNLQGNI--NTWDMPQLEMLDLSVNKFFGELPDFSRSKRLKKLDLSRNKISGVV 494

Query: 484 PRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQ 543
           P+      E+M L +S N++ G IP ELSSCK LV+LDLS+N  +G IP+S +E  VL  
Sbjct: 495 PQGLMTFPEIMDLDLSENEITGVIPRELSSCKNLVNLDLSHNNFTGEIPSSFAEFQVLSD 554

Query: 544 LDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGN-DLCGGD 602
           LDLS NQLSG+IP+ LG + SLVQVNISHN  HGSLP TGAFLAINATAV GN DLC  +
Sbjct: 555 LDLSCNQLSGEIPKNLGNIESLVQVNISHNLLHGSLPFTGAFLAINATAVEGNIDLCSEN 614

Query: 603 STSGLPPCKGNKKNQT--WWLVVACFLAVLIMLALAAFAITVI--RGKKILELKRVENED 658
           S SGL PCK  +K  T  WWL++    A  + + ++ F I ++  R   +LE+K+VE ED
Sbjct: 615 SASGLRPCKVVRKRSTKSWWLIITSTFAAFLAVLVSGFFIVLVFQRTHNVLEVKKVEQED 674

Query: 659 GI-WEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKII 717
           G  WE QFF+SK  KS T++ I+SS  ++N              V    N + FVVK++ 
Sbjct: 675 GTKWETQFFDSKFMKSFTVNTILSSLKDQN--------------VLVDKNGVHFVVKEVK 720

Query: 718 DVNTITTSSFWPD-VSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS 776
             +++      P+ +S   KL  H NI+++   CRSE  AYL++E +EGK LS+VL  LS
Sbjct: 721 KYDSL------PEMISDMRKLSDHKNILKIVATCRSETVAYLIHEDVEGKRLSQVLSGLS 774

Query: 777 WERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK 836
           WERRRK+  GI +ALRFLH  CSP+VVAG++SP  +++D  DEP L L +PGL       
Sbjct: 775 WERRRKIMKGIVEALRFLHCRCSPAVVAGNLSPENIVIDVTDEPRLCLGLPGLLCM---- 830

Query: 837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGK---SPADADFGVHESIVEWARY 893
               +AY+APET+E K++T K DIYGFG++L+ LLTGK   S  D + GV+ S+V+WARY
Sbjct: 831 ---DAAYMAPETREHKEMTSKSDIYGFGILLLHLLTGKCSSSNEDIESGVNGSLVKWARY 887

Query: 894 CYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE 948
            YS+CH+DTW+D  I   V   Q EIV +MNLAL CTA DP  RPC ++V + LE
Sbjct: 888 SYSNCHIDTWIDSSIDTSVH--QREIVHVMNLALKCTAIDPQERPCTNNVLQALE 940

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  543 bits (1400), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 350/989 (35%), Positives = 531/989 (53%), Gaps = 66/989 (6%)

Query: 8   FMFLFLSFCTCHGA-----------ELELLLSFKSTVNDPYNFLSNWDSSVT--FCKWNG 54
            + LFL +C                EL +LLS KST+ DP NFL +W  S T   C W G
Sbjct: 5   IIVLFLYYCYIGSTSSVLASIDNVNELSVLLSVKSTLVDPLNFLKDWKLSDTSDHCNWTG 64

Query: 55  ISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRF 114
           + C ++ +V  ++L+  N++GKIS SI  L  + S N+S N     +P  I      L+ 
Sbjct: 65  VRCNSNGNVEKLDLAGMNLTGKISDSISQLSSLVSFNISCNGFESLLPKSI----PPLKS 120

Query: 115 LNLSNNNFTGPVPIGSLSRLEILDL--SNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEI 172
           +++S N+F+G + + S   L ++ L  S N LSG + E++G+   L+VLDL GN   G +
Sbjct: 121 IDISQNSFSGSLFLFSNESLGLVHLNASGNNLSGNLTEDLGNLVSLEVLDLRGNFFQGSL 180

Query: 173 PLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNH 232
           P S  N+  L+   L+ N L G +P  +GQL +L+   LGYN   G IP E G++ SL +
Sbjct: 181 PSSFKNLQKLRFLGLSGNNLTGELPSVLGQLPSLETAILGYNEFKGPIPPEFGNINSLKY 240

Query: 233 LDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEI 292
           LDL    L+G+IP   G L +L  L LY+N  TG+IP+ I  + +L   D SDN L+GEI
Sbjct: 241 LDLAIGKLSGEIPSELGKLKSLETLLLYENNFTGTIPREIGSITTLKVLDFSDNALTGEI 300

Query: 293 PEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTV 352
           P E+ +L+NL++L+L  N  +G IP +++S+ +LQVL+LW+N  SGE+PS+LGK + L  
Sbjct: 301 PMEITKLKNLQLLNLMRNKLSGSIPPAISSLAQLQVLELWNNTLSGELPSDLGKNSPLQW 360

Query: 353 IDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGEL 412
           +D+S+N  +G+IP TLC+ G+L KLILF+N+  G+IP +LSTC+SL RVR+QNN L+G +
Sbjct: 361 LDVSSNSFSGEIPSTLCNKGNLTKLILFNNTFTGQIPATLSTCQSLVRVRMQNNLLNGSI 420

Query: 413 SSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS-DQLEN 471
              F +L  +  L+++GN LSG I     +  SL  ++ + N     LP +  S   L+ 
Sbjct: 421 PIGFGKLEKLQRLELAGNRLSGGIPGDISDSVSLSFIDFSRNQIRSSLPSTILSIHNLQA 480

Query: 472 LDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHI 531
             +++N  SG +P  F     L  L +S N L G IP  ++SC+KLVSL+L NN L+G I
Sbjct: 481 FLVADNFISGEVPDQFQDCPSLSNLDLSSNTLTGTIPSSIASCEKLVSLNLRNNNLTGEI 540

Query: 532 PASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINAT 591
           P  ++ M  L  LDLS N L+G +P+++G   +L  +N+S+N   G +P  G    IN  
Sbjct: 541 PRQITTMSALAVLDLSNNSLTGVLPESIGTSPALELLNVSYNKLTGPVPINGFLKTINPD 600

Query: 592 AVAGND-LCGGDSTSGLPPC-------------KGNKKNQTWWLVVACFLAVLIMLALAA 637
            + GN  LCGG     LPPC              G +    W + +A  LA+ I+  +  
Sbjct: 601 DLRGNSGLCGGV----LPPCSKFQRATSSHSSLHGKRIVAGWLIGIASVLALGILTIVTR 656

Query: 638 FAITVIRGKKILELKRVENEDGIWEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVS 697
                         +     +  W +  F+ ++G   T  +I++   E N+   G  G+ 
Sbjct: 657 TLYKKWYSNGFCGDETASKGEWPWRLMAFH-RLG--FTASDILACIKESNMIGMGATGI- 712

Query: 698 SSYKVRSLANDMQFVVKKI----IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE 753
             YK     +     VKK+     D+   TT  F  +V+  GKL  H NIVRL G   ++
Sbjct: 713 -VYKAEMSRSSTVLAVKKLWRSAADIEDGTTGDFVGEVNLLGKL-RHRNIVRLLGFLYND 770

Query: 754 KAAYLVYEYIEGKELSEVLRN--------LSWERRRKVAIGIAKALRFLHFHCSPSVVAG 805
           K   +VYE++    L + +          + W  R  +A+G+A  L +LH  C P V+  
Sbjct: 771 KNMMIVYEFMLNGNLGDAIHGKNAAGRLLVDWVSRYNIALGVAHGLAYLHHDCHPPVIHR 830

Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPETKESKDITEKGD 859
           D+    +++D   +   R++  GLA        T S    S  Y+APE   +  + EK D
Sbjct: 831 DIKSNNILLDANLDA--RIADFGLARMMARKKETVSMVAGSYGYIAPEYGYTLKVDEKID 888

Query: 860 IYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD-CHLDTWVDPFIRGHVSSIQNE 918
           IY +G++L++LLTG+ P + +FG    IVEW R    D   L+  +DP + G+   +Q E
Sbjct: 889 IYSYGVVLLELLTGRRPLEPEFGESVDIVEWVRRKIRDNISLEEALDPNV-GNCRYVQEE 947

Query: 919 IVEIMNLALHCTAGDPTARPCASDVTKTL 947
           ++ ++ +AL CT   P  RP   DV   L
Sbjct: 948 MLLVLQIALLCTTKLPKDRPSMRDVISML 976

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  543 bits (1399), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 356/961 (37%), Positives = 518/961 (53%), Gaps = 47/961 (4%)

Query: 21  AELELLLSFKS--TVNDPYNFLSNWDSSVTFCKWNGISCQNS-THVNAIELSAKNISGKI 77
            EL  LLS KS  T+++    L++W+ S TFC W G++C  S  HV +++LS  N+SG +
Sbjct: 26  TELHALLSLKSSFTIDEHSPLLTSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTL 85

Query: 78  SSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP---IGSLSRL 134
           SS + HLP +++++L++NQ+SG IP  I S+   LR LNLSNN F G  P      L  L
Sbjct: 86  SSDVAHLPLLQNLSLAANQISGPIPPQI-SNLYELRHLNLSNNVFNGSFPDELSSGLVNL 144

Query: 135 EILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIG 194
            +LDL NN L+G +P  + + + L+ L LGGN   G+IP +      L+   ++ N+L G
Sbjct: 145 RVLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTG 204

Query: 195 SIPREIGQLRNLKWIYLGY-NNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSN 253
            IP EIG L  L+ +Y+GY N     +P EIG+L+ L   D     LTG+IPP  G L  
Sbjct: 205 KIPPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGEIPPEIGKLQK 264

Query: 254 LRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFT 313
           L  LFL  N  TG+I + +  + SL S DLS+N  +GEIP    QL+NL +L+LF N   
Sbjct: 265 LDTLFLQVNAFTGTITQELGLISSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKLY 324

Query: 314 GKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGS 373
           G IP  +  MP+L+VLQLW N F+G IP  LG+   L ++DLS+N LTG +P  +C    
Sbjct: 325 GAIPEFIGEMPELEVLQLWENNFTGSIPQKLGENGRLVILDLSSNKLTGTLPPNMCSGNR 384

Query: 374 LFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLS 433
           L  LI   N L G IP+SL  C+SL R+R+  N L+G +  E   LP +  +++  N L+
Sbjct: 385 LMTLITLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKELFGLPKLSQVELQDNYLT 444

Query: 434 GRIGEQKWEMT-SLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLS 491
           G +      ++  L  ++L+ N  SG LP + G+   ++ L L  N+FSG+IP   GRL 
Sbjct: 445 GELPISGGGVSGDLGQISLSNNQLSGSLPAAIGNLSGVQKLLLDGNKFSGSIPPEIGRLQ 504

Query: 492 ELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQL 551
           +L +L  S N   G I  E+S CK L  +DLS N+LSG IP  L+ M +L  L+LS N L
Sbjct: 505 QLSKLDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNHL 564

Query: 552 SGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGND-LCGGDSTSGLPPC 610
            G IP T+  + SL  V+ S+N+  G +PSTG F   N T+  GN  LCG      L PC
Sbjct: 565 VGSIPVTIASMQSLTSVDFSYNNLSGLVPSTGQFSYFNYTSFVGNSHLCG----PYLGPC 620

Query: 611 -KGNKKNQTWWLVVACFLAVLIMLALAA--FAITVIRGKKILELKRVENEDGIWEVQFFN 667
            KG  ++    L     L +++ L   +  FAI  I   + L   R  +E   W +  F 
Sbjct: 621 GKGTHQSHVKPLSATTKLLLVLGLLFCSMVFAIVAIIKARSL---RNASEAKAWRLTAFQ 677

Query: 668 SKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITT--S 725
                  T D+++ S  E+N+  +G  G+   YK      D+   VK++  ++  ++   
Sbjct: 678 R---LDFTCDDVLDSLKEDNIIGKGGAGI--VYKGTMPKGDL-VAVKRLATMSHGSSHDH 731

Query: 726 SFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-----NLSWERR 780
            F  ++   G+ I H +IVRL G C + +   LVYEY+    L EVL      +L W  R
Sbjct: 732 GFNAEIQTLGR-IRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWNTR 790

Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR-------LSVPGLAYCT 833
            K+A+  AK L +LH  CSP +V  DV    +++D   E H+        L   G + C 
Sbjct: 791 YKIALEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECM 850

Query: 834 DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARY 893
            S    S  Y+APE   +  + EK D+Y FG++L++L+TGK P   +FG    IV+W R 
Sbjct: 851 -SAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGKKPV-GEFGDGVDIVQWVR- 907

Query: 894 CYSDCHLDTWVDPFIRGHVSSIQ-NEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR 952
             +D + D  V   I   +SS+  +E+  +  +AL C       RP   +V + L    +
Sbjct: 908 SMTDSNKDC-VLKVIDLRLSSVPVHEVTHVFYVALLCVEEQAVERPTMREVVQILTEIPK 966

Query: 953 I 953
           I
Sbjct: 967 I 967

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score =  530 bits (1365), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 355/1020 (34%), Positives = 530/1020 (51%), Gaps = 93/1020 (9%)

Query: 1    MANNSILFMFLFLSFC--------TCHGAELELLLSFKSTVNDPYNFLSNW---DSSVTF 49
            MA   + F+F ++ F         T   +E E+LL+FKS + DP N L +W   +++ TF
Sbjct: 1    MAIPRLFFLFYYIGFALFPFVSSETFQNSEQEILLAFKSDLFDPSNNLQDWKRPENATTF 60

Query: 50   -----CKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSD 104
                 C W G+ C  + +V  + LS  N+SG +S  I   P +++++LS+N     +P  
Sbjct: 61   SELVHCHWTGVHCDANGYVAKLLLSNMNLSGNVSDQIQSFPSLQALDLSNNAFESSLPKS 120

Query: 105  IFSSSNSLRFLNLSNNNFTGPVP--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLD 162
            + S+  SL+ +++S N+F G  P  +G  + L  ++ S+N  SG +PE++G+ + L+VLD
Sbjct: 121  L-SNLTSLKVIDVSVNSFFGTFPYGLGMATGLTHVNASSNNFSGFLPEDLGNATTLEVLD 179

Query: 163  LGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPK 222
              G    G +P S  N+ +L+   L+ N   G +P+ IG+L +L+ I LGYN   GEIP+
Sbjct: 180  FRGGYFEGSVPSSFKNLKNLKFLGLSGNNFGGKVPKVIGELSSLETIILGYNGFMGEIPE 239

Query: 223  EIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFD 282
            E G LT L +LDL   NLTGQIP S G L  L  ++LYQN+LTG +P+ + G+ SLV  D
Sbjct: 240  EFGKLTRLQYLDLAVGNLTGQIPSSLGQLKQLTTVYLYQNRLTGKLPRELGGMTSLVFLD 299

Query: 283  LSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPS 342
            LSDN ++GEIP EV +L+NL++L+L  N  TG IPS +A +P L+VL+LW N   G +P 
Sbjct: 300  LSDNQITGEIPMEVGELKNLQLLNLMRNQLTGIIPSKIAELPNLEVLELWQNSLMGSLPV 359

Query: 343  NLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVR 402
            +LGK + L  +D+S+N L+G IP  LC S +L KLILF+NS  G+IP  + +C +L RVR
Sbjct: 360  HLGKNSPLKWLDVSSNKLSGDIPSGLCYSRNLTKLILFNNSFSGQIPEEIFSCPTLVRVR 419

Query: 403  LQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPD 462
            +Q N +SG + +    LP++  L+++ N+L+G+I +     TSL  ++++ N+ S     
Sbjct: 420  IQKNHISGSIPAGSGDLPMLQHLELAKNNLTGKIPDDIALSTSLSFIDISFNHLSSLSSS 479

Query: 463  SFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDL 522
             F S  L+    S N F+G IP        L  L +S N   G IPE ++S +KLVSL+L
Sbjct: 480  IFSSPNLQTFIASHNNFAGKIPNQIQDRPSLSVLDLSFNHFSGGIPERIASFEKLVSLNL 539

Query: 523  SNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST 582
             +NQL G IP +L+ M +L  LDLS N L+G IP  LG   +L  +N+S N   G +PS 
Sbjct: 540  KSNQLVGEIPKALAGMHMLAVLDLSNNSLTGNIPADLGASPTLEMLNVSFNKLDGPIPSN 599

Query: 583  GAFLAINATAVAGND-LCGGDSTSGLPPC--------KGNKKNQTW-------WLVVACF 626
              F AI+   + GN+ LCGG     LPPC        KG    +         ++V    
Sbjct: 600  MLFAAIDPKDLVGNNGLCGGV----LPPCSKSLALSAKGRNPGRIHVNHAVFGFIVGTSV 655

Query: 627  LAVLIMLALAA------------FAITVIRGKKILELKRVENEDGIWEVQFFNSKVGKSL 674
            +  + M+ LA             FA   I  KK         E+  W +  F        
Sbjct: 656  IVAMGMMFLAGRWIYTRWDLYSNFAREYIFCKK-------PREEWPWRLVAFQRLC---F 705

Query: 675  TIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFV-VKKI------------IDVNT 721
            T  +I+S   E N+   G  G+   YK   +   +  V VKK+                 
Sbjct: 706  TAGDILSHIKESNIIGMGAIGI--VYKAEVMRRPLLTVAVKKLWRSPSPQNDIEDHHQEE 763

Query: 722  ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN------- 774
                    +V+  G L  H NIV++ G   +E+   +VYEY+    L   L +       
Sbjct: 764  DEEDDILREVNLLGGL-RHRNIVKILGYVHNEREVMMVYEYMPNGNLGTALHSKDEKFLL 822

Query: 775  LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC-- 832
              W  R  VA+G+ + L +LH  C P ++  D+    +++D   E   R++  GLA    
Sbjct: 823  RDWLSRYNVAVGVVQGLNYLHNDCYPPIIHRDIKSNNILLDSNLEA--RIADFGLAKMML 880

Query: 833  ----TDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIV 888
                T S    S  Y+APE   +  I EK DIY  G++L++L+TGK P D  F     +V
Sbjct: 881  HKNETVSMVAGSYGYIAPEYGYTLKIDEKSDIYSLGVVLLELVTGKMPIDPSFEDSIDVV 940

Query: 889  EWARY-CYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL 947
            EW R     +  L+  +D  I G    +  E++  + +AL CTA  P  RP   DV   L
Sbjct: 941  EWIRRKVKKNESLEEVIDASIAGDCKHVIEEMLLALRIALLCTAKLPKDRPSIRDVITML 1000

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  518 bits (1333), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 338/959 (35%), Positives = 516/959 (53%), Gaps = 49/959 (5%)

Query: 21  AELELLLSFKSTV----NDPYNFLSNWDSSVTFCKWNGISCQNST-HVNAIELSAKNISG 75
           +E   LLS K+++    +D  + LS+W  S +FC W G++C  S  HV +++LS  N+SG
Sbjct: 24  SEFRALLSLKTSLTGAGDDKNSPLSSWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSG 83

Query: 76  KISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP---IGSLS 132
            +S  + HL  +++++L+ N +SG IP +I SS + LR LNLSNN F G  P      L 
Sbjct: 84  TLSPDVSHLRLLQNLSLAENLISGPIPPEI-SSLSGLRHLNLSNNVFNGSFPDEISSGLV 142

Query: 133 RLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQL 192
            L +LD+ NN L+G +P  + + + L+ L LGGN   G+IP S  +   ++   ++ N+L
Sbjct: 143 NLRVLDVYNNNLTGDLPVSVTNLTQLRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNEL 202

Query: 193 IGSIPREIGQLRNLKWIYLGY-NNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNL 251
           +G IP EIG L  L+ +Y+GY N     +P EIG+L+ L   D     LTG+IPP  G L
Sbjct: 203 VGKIPPEIGNLTTLRELYIGYYNAFEDGLPPEIGNLSELVRFDGANCGLTGEIPPEIGKL 262

Query: 252 SNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNN 311
             L  LFL  N  +G +   +  L SL S DLS+N  +GEIP    +L+NL +L+LF N 
Sbjct: 263 QKLDTLFLQVNVFSGPLTWELGTLSSLKSMDLSNNMFTGEIPASFAELKNLTLLNLFRNK 322

Query: 312 FTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDS 371
             G+IP  +  +P+L+VLQLW N F+G IP  LG+   L ++DLS+N LTG +P  +C  
Sbjct: 323 LHGEIPEFIGDLPELEVLQLWENNFTGSIPQKLGENGKLNLVDLSSNKLTGTLPPNMCSG 382

Query: 372 GSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGND 431
             L  LI   N L G IP+SL  C+SL R+R+  N L+G +      LP +  +++  N 
Sbjct: 383 NKLETLITLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKGLFGLPKLTQVELQDNY 442

Query: 432 LSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRL 490
           LSG +        +L  ++L+ N  SG LP + G+   ++ L L  N+F G IP   G+L
Sbjct: 443 LSGELPVAGGVSVNLGQISLSNNQLSGPLPPAIGNFTGVQKLLLDGNKFQGPIPSEVGKL 502

Query: 491 SELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQ 550
            +L ++  S N   G I  E+S CK L  +DLS N+LSG IP  ++ M +L  L+LS N 
Sbjct: 503 QQLSKIDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGEIPNEITAMKILNYLNLSRNH 562

Query: 551 LSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGN-DLCGGDSTSGLPP 609
           L G IP ++  + SL  ++ S+N+  G +P TG F   N T+  GN DLCG      L P
Sbjct: 563 LVGSIPGSISSMQSLTSLDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCG----PYLGP 618

Query: 610 CK------GNKKNQTWWLVVACFLAVLIMLALAAFAITVIRGKKILELKRVENEDGIWEV 663
           CK      G++ +    L  +  L +++ L + + A  V+   K   LK+  +E   W +
Sbjct: 619 CKDGVAKGGHQSHSKGPLSASMKLLLVLGLLVCSIAFAVVAIIKARSLKKA-SESRAWRL 677

Query: 664 QFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT 723
             F        T D+++ S  E+N+  +G  G+   YK   + N     VK++  ++  +
Sbjct: 678 TAFQR---LDFTCDDVLDSLKEDNIIGKGGAGI--VYK-GVMPNGDLVAVKRLAAMSRGS 731

Query: 724 T--SSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-----NLS 776
           +    F  ++   G+ I H +IVRL G C + +   LVYEY+    L EVL      +L 
Sbjct: 732 SHDHGFNAEIQTLGR-IRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLH 790

Query: 777 WERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR-------LSVPGL 829
           W+ R K+A+  AK L +LH  CSP +V  DV    +++D   E H+        L   G 
Sbjct: 791 WDTRYKIALEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGT 850

Query: 830 AYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVE 889
           + C  S    S  Y+APE   +  + EK D+Y FG++L++L+TG+ P   +FG    IV+
Sbjct: 851 SECM-SAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPV-GEFGDGVDIVQ 908

Query: 890 WARYCYSDCHLDTWVDPFIRGHVSSIQ-NEIVEIMNLALHCTAGDPTARPCASDVTKTL 947
           W R   +D + D+ V   +   +SSI  +E+  +  +A+ C       RP   +V + L
Sbjct: 909 WVRK-MTDSNKDS-VLKVLDPRLSSIPIHEVTHVFYVAMLCVEEQAVERPTMREVVQIL 965

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3

 Score =  501 bits (1291), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 341/966 (35%), Positives = 516/966 (53%), Gaps = 62/966 (6%)

Query: 25  LLLSFKSTVNDPYNFLSNWD--SSVTFCKWNGISCQN-STHVNAIELSAKNISGKISSSI 81
           +L+S K + +     L +W+  +  + C W G+SC N +  +  ++LS  NISG IS  I
Sbjct: 37  VLISLKQSFDSYDPSLDSWNIPNFNSLCSWTGVSCDNLNQSITRLDLSNLNISGTISPEI 96

Query: 82  FHL-PHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP---IGSLSRLEIL 137
             L P +  +++SSN  SGE+P +I+  S  L  LN+S+N F G +       +++L  L
Sbjct: 97  SRLSPSLVFLDISSNSFSGELPKEIYELS-GLEVLNISSNVFEGELETRGFSQMTQLVTL 155

Query: 138 DLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIP 197
           D  +N  +G +P  + + + L+ LDLGGN   GEIP S  +  SL+  +L+ N L G IP
Sbjct: 156 DAYDNSFNGSLPLSLTTLTRLEHLDLGGNYFDGEIPRSYGSFLSLKFLSLSGNDLRGRIP 215

Query: 198 REIGQLRNLKWIYLGY-NNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRY 256
            E+  +  L  +YLGY N+  G IP + G L +L HLDL   +L G IP   GNL NL  
Sbjct: 216 NELANITTLVQLYLGYYNDYRGGIPADFGRLINLVHLDLANCSLKGSIPAELGNLKNLEV 275

Query: 257 LFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKI 316
           LFL  N+LTGS+P+ +  + SL + DLS+N+L GEIP E+  LQ L++ +LF N   G+I
Sbjct: 276 LFLQTNELTGSVPRELGNMTSLKTLDLSNNFLEGEIPLELSGLQKLQLFNLFFNRLHGEI 335

Query: 317 PSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFK 376
           P  ++ +P LQ+L+LW N F+G+IPS LG   NL  IDLSTN LTG IPE+LC    L  
Sbjct: 336 PEFVSELPDLQILKLWHNNFTGKIPSKLGSNGNLIEIDLSTNKLTGLIPESLCFGRRLKI 395

Query: 377 LILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRI 436
           LILF+N L G +P  L  C+ L R RL  N L+ +L      LP +  L++  N L+G I
Sbjct: 396 LILFNNFLFGPLPEDLGQCEPLWRFRLGQNFLTSKLPKGLIYLPNLSLLELQNNFLTGEI 455

Query: 437 GEQK---WEMTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSE 492
            E++    + +SL  +NL+ N  SG +P S  +   L+ L L  NR SG IP   G L  
Sbjct: 456 PEEEAGNAQFSSLTQINLSNNRLSGPIPGSIRNLRSLQILLLGANRLSGQIPGEIGSLKS 515

Query: 493 LMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLS 552
           L+++ +SRN   G  P E   C  L  LDLS+NQ+SG IP  +S++ +L  L++S N  +
Sbjct: 516 LLKIDMSRNNFSGKFPPEFGDCMSLTYLDLSHNQISGQIPVQISQIRILNYLNVSWNSFN 575

Query: 553 GKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGND-LCGGDSTSGLPPCK 611
             +P  LG + SL   + SHN+F GS+P++G F   N T+  GN  LCG  S     PC 
Sbjct: 576 QSLPNELGYMKSLTSADFSHNNFSGSVPTSGQFSYFNNTSFLGNPFLCGFSSN----PCN 631

Query: 612 GNKKNQTWWLV----------VACFLAVLIMLALAAFAITVIRGKKILELKRVENEDGIW 661
           G++      L+          ++    +   L L  F +  +    +   +  +N   +W
Sbjct: 632 GSQNQSQSQLLNQNNARSRGEISAKFKLFFGLGLLGFFLVFVVLAVVKNRRMRKNNPNLW 691

Query: 662 EVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT 721
           ++  F  K+G     + I+    E ++  +G +G+   YK   + N  +  VKK++   T
Sbjct: 692 KLIGF-QKLG--FRSEHILECVKENHVIGKGGRGI--VYK-GVMPNGEEVAVKKLL---T 742

Query: 722 ITTSS-----FWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN-- 774
           IT  S        ++   G+ I H NIVRL   C ++    LVYEY+    L EVL    
Sbjct: 743 ITKGSSHDNGLAAEIQTLGR-IRHRNIVRLLAFCSNKDVNLLVYEYMPNGSLGEVLHGKA 801

Query: 775 ---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL--------R 823
              L WE R ++A+  AK L +LH  CSP ++  DV    +++  + E H+         
Sbjct: 802 GVFLKWETRLQIALEAAKGLCYLHHDCSPLIIHRDVKSNNILLGPEFEAHVADFGLAKFM 861

Query: 824 LSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV 883
           +   G + C  S +  S  Y+APE   +  I EK D+Y FG++L++L+TG+ P D +FG 
Sbjct: 862 MQDNGASECMSSIA-GSYGYIAPEYAYTLRIDEKSDVYSFGVVLLELITGRKPVD-NFGE 919

Query: 884 HE-SIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ-NEIVEIMNLALHCTAGDPTARPCAS 941
               IV+W++   ++C+    V   I   +S+I   E +E+  +A+ C       RP   
Sbjct: 920 EGIDIVQWSK-IQTNCNRQGVVK-IIDQRLSNIPLAEAMELFFVAMLCVQEHSVERPTMR 977

Query: 942 DVTKTL 947
           +V + +
Sbjct: 978 EVVQMI 983

Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SYQ8|CLV1_ARATH Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3

 Score =  486 bits (1251), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 325/986 (32%), Positives = 503/986 (51%), Gaps = 103/986 (10%)

Query: 21  AELELLLSFKSTVNDPYNF-LSNW---DSSVTFCKWNGISCQNSTHVNAIELSAKNISGK 76
            ++E+LL+ KS++  P    L +W    S    C ++G+SC +   V ++ +S   + G 
Sbjct: 26  TDMEVLLNLKSSMIGPKGHGLHDWIHSSSPDAHCSFSGVSCDDDARVISLNVSFTPLFGT 85

Query: 77  ISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNN-NFTGPVP---IGSLS 132
           IS  I  L H+ ++ L++N  +GE+P ++  S  SL+ LN+SNN N TG  P   + ++ 
Sbjct: 86  ISPEIGMLTHLVNLTLAANNFTGELPLEM-KSLTSLKVLNISNNGNLTGTFPGEILKAMV 144

Query: 133 RLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQL 192
            LE+LD  NN  +GK+P E+     LK L  GGN   GEIP S  +I SL+   L    L
Sbjct: 145 DLEVLDTYNNNFNGKLPPEMSELKKLKYLSFGGNFFSGEIPESYGDIQSLEYLGLNGAGL 204

Query: 193 IGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFG--- 249
            G  P  + +L+NL+ +Y+GY                       YN+ TG +PP FG   
Sbjct: 205 SGKSPAFLSRLKNLREMYIGY-----------------------YNSYTGGVPPEFGGLT 241

Query: 250 ---------------------NLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYL 288
                                NL +L  LFL+ N LTG IP  + GL SL S DLS N L
Sbjct: 242 KLEILDMASCTLTGEIPTSLSNLKHLHTLFLHINNLTGHIPPELSGLVSLKSLDLSINQL 301

Query: 289 SGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQN 348
           +GEIP+  I L N+ +++LF NN  G+IP ++  +PKL+V ++W N F+ ++P+NLG+  
Sbjct: 302 TGEIPQSFINLGNITLINLFRNNLYGQIPEAIGELPKLEVFEVWENNFTLQLPANLGRNG 361

Query: 349 NLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRL 408
           NL  +D+S N LTG IP+ LC    L  LIL +N   G IP  L  CKSL ++R+  N L
Sbjct: 362 NLIKLDVSDNHLTGLIPKDLCRGEKLEMLILSNNFFFGPIPEELGKCKSLTKIRIVKNLL 421

Query: 409 SGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS-D 467
           +G + +    LPLV  ++++ N  SG +         L  + L+ N FSG++P + G+  
Sbjct: 422 NGTVPAGLFNLPLVTIIELTDNFFSGEL-PVTMSGDVLDQIYLSNNWFSGEIPPAIGNFP 480

Query: 468 QLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQL 527
            L+ L L  NRF G IPR    L  L ++  S N + G IP+ +S C  L+S+DLS N++
Sbjct: 481 NLQTLFLDRNRFRGNIPREIFELKHLSRINTSANNITGGIPDSISRCSTLISVDLSRNRI 540

Query: 528 SGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLA 587
           +G IP  ++ +  LG L++S NQL+G IP  +G + SL  +++S N   G +P  G FL 
Sbjct: 541 NGEIPKGINNVKNLGTLNISGNQLTGSIPTGIGNMTSLTTLDLSFNDLSGRVPLGGQFLV 600

Query: 588 INATAVAGND-LCGGDSTS-GLPPCKGNKKNQTWWL----VVACFLAVLIMLALAAFAIT 641
            N T+ AGN  LC     S    P + +  N T       +V   +A +  L L + AI 
Sbjct: 601 FNETSFAGNTYLCLPHRVSCPTRPGQTSDHNHTALFSPSRIVITVIAAITGLILISVAIR 660

Query: 642 VIRGKKILELKRVENEDGI-WEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSY 700
            +  KK        N+  + W++  F     KS   ++++    EEN+  +G  G+   Y
Sbjct: 661 QMNKKK--------NQKSLAWKLTAFQKLDFKS---EDVLECLKEENIIGKGGAGI--VY 707

Query: 701 KVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV 759
           +  S+ N++   +K+++   T  +   F  ++   G+ I H +IVRL G   ++    L+
Sbjct: 708 R-GSMPNNVDVAIKRLVGRGTGRSDHGFTAEIQTLGR-IRHRHIVRLLGYVANKDTNLLL 765

Query: 760 YEYIEGKELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV 814
           YEY+    L E+L      +L WE R +VA+  AK L +LH  CSP ++  DV    +++
Sbjct: 766 YEYMPNGSLGELLHGSKGGHLQWETRHRVAVEAAKGLCYLHHDCSPLILHRDVKSNNILL 825

Query: 815 DGKDEPHL------RLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILI 868
           D   E H+      +  V G A    S    S  Y+APE   +  + EK D+Y FG++L+
Sbjct: 826 DSDFEAHVADFGLAKFLVDGAASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLL 885

Query: 869 DLLTGKSPADADFGVHESIVEWARYCYSDCH-------LDTWVDPFIRGHVSSIQNEIVE 921
           +L+ GK P   +FG    IV W R    +         +   VDP + G+  +    ++ 
Sbjct: 886 ELIAGKKPV-GEFGEGVDIVRWVRNTEEEITQPSDAAIVVAIVDPRLTGYPLT---SVIH 941

Query: 922 IMNLALHCTAGDPTARPCASDVTKTL 947
           +  +A+ C   +  ARP   +V   L
Sbjct: 942 VFKIAMMCVEEEAAARPTMREVVHML 967

Involved in the detection of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristem maintenance. Acts with CLV3 as a ligand-receptor pair in a signal transduction pathway coordinating growth between adjacent meristematic regions and controlling the balance between meristem cell proliferation and differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGX3|HSL2_ARATH LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1

 Score =  478 bits (1229), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 330/971 (33%), Positives = 513/971 (52%), Gaps = 71/971 (7%)

Query: 30  KSTVNDPYNFLSNW---DSSVTFCKWNGISCQ----NSTHVNAIELSAKNISGKISSSIF 82
           K+ + DP   L +W     + + C W GI+C     +S  V  I+LS  NISG       
Sbjct: 36  KTRLFDPDGNLQDWVITGDNRSPCNWTGITCHIRKGSSLAVTTIDLSGYNISGGFPYGFC 95

Query: 83  HLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGS--LSRLEILDLS 140
            +  + +I LS N L+G I S   S  + L+ L L+ NNF+G +P  S    +L +L+L 
Sbjct: 96  RIRTLINITLSQNNLNGTIDSAPLSLCSKLQNLILNQNNFSGKLPEFSPEFRKLRVLELE 155

Query: 141 NNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGS-IPRE 199
           +N+ +G+IP+  G  + L+VL+L GN L G +P  +  +T L    LA      S IP  
Sbjct: 156 SNLFTGEIPQSYGRLTALQVLNLNGNPLSGIVPAFLGYLTELTRLDLAYISFDPSPIPST 215

Query: 200 IGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFL 259
           +G L NL  + L ++NL GEIP  I +L  L +LDL  N+LTG+IP S G L ++  + L
Sbjct: 216 LGNLSNLTDLRLTHSNLVGEIPDSIMNLVLLENLDLAMNSLTGEIPESIGRLESVYQIEL 275

Query: 260 YQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSS 319
           Y N+L+G +P+SI  L  L +FD+S N L+GE+PE++  LQ L   +L  N FTG +P  
Sbjct: 276 YDNRLSGKLPESIGNLTELRNFDVSQNNLTGELPEKIAALQ-LISFNLNDNFFTGGLPDV 334

Query: 320 LASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLIL 379
           +A  P L   ++++N F+G +P NLGK + ++  D+STN  +G++P  LC    L K+I 
Sbjct: 335 VALNPNLVEFKIFNNSFTGTLPRNLGKFSEISEFDVSTNRFSGELPPYLCYRRKLQKIIT 394

Query: 380 FSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQ 439
           FSN L G+IP S   C SL  +R+ +N+LSGE+ + F  LPL      + N L G I   
Sbjct: 395 FSNQLSGEIPESYGDCHSLNYIRMADNKLSGEVPARFWELPLTRLELANNNQLQGSIPPS 454

Query: 440 KWEMTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKI 498
             +   L  L ++ NNFSG +P        L  +DLS N F G+IP    +L  L ++++
Sbjct: 455 ISKARHLSQLEISANNFSGVIPVKLCDLRDLRVIDLSRNSFLGSIPSCINKLKNLERVEM 514

Query: 499 SRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQT 558
             N L G+IP  +SSC +L  L+LSNN+L G IP  L ++PVL  LDLS NQL+G+IP  
Sbjct: 515 QENMLDGEIPSSVSSCTELTELNLSNNRLRGGIPPELGDLPVLNYLDLSNNQLTGEIPAE 574

Query: 559 LGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGNDLCGGDSTSGLPPCKGNKKNQT 618
           L R+  L Q N+S N  +G +PS         + +   +LC  +    + PC+   K +T
Sbjct: 575 LLRL-KLNQFNVSDNKLYGKIPSGFQQDIFRPSFLGNPNLCAPN-LDPIRPCRS--KRET 630

Query: 619 WWLVVACFLAVLIMLALAAFAITVIRGKKILELKRVENEDGIWEVQFFNSKVGKSLTIDE 678
            +++    +++L ++AL    + +    K L  ++ +  + I   Q    +VG   T ++
Sbjct: 631 RYILP---ISILCIVALTGALVWLFIKTKPLFKRKPKRTNKITIFQ----RVG--FTEED 681

Query: 679 IISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKI---IDVNTITTSSFWPDVSQFG 735
           I    TE+N+   G  G+   Y+V+ L +     VKK+       T + S F  +V   G
Sbjct: 682 IYPQLTEDNIIGSGGSGL--VYRVK-LKSGQTLAVKKLWGETGQKTESESVFRSEVETLG 738

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---------LSWERRRKVAIG 786
           + + H NIV+L   C  E+  +LVYE++E   L +VL +         L W  R  +A+G
Sbjct: 739 R-VRHGNIVKLLMCCNGEEFRFLVYEFMENGSLGDVLHSEKEHRAVSPLDWTTRFSIAVG 797

Query: 787 IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR---LSVP-------GLAYCTDSK 836
            A+ L +LH    P +V  DV    +++D + +P +    L+ P       G++  + S 
Sbjct: 798 AAQGLSYLHHDSVPPIVHRDVKSNNILLDHEMKPRVADFGLAKPLKREDNDGVSDVSMSC 857

Query: 837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEW---ARY 893
              S  Y+APE   +  + EK D+Y FG++L++L+TGK P D+ FG ++ IV++   A  
Sbjct: 858 VAGSYGYIAPEYGYTSKVNEKSDVYSFGVVLLELITGKRPNDSSFGENKDIVKFAMEAAL 917

Query: 894 CYSDC----------------HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
           CY                    L   VDP ++      + EI +++++AL CT+  P  R
Sbjct: 918 CYPSPSAEDGAMNQDSLGNYRDLSKLVDPKMKLSTREYE-EIEKVLDVALLCTSSFPINR 976

Query: 938 PCASDVTKTLE 948
           P    V + L+
Sbjct: 977 PTMRKVVELLK 987

Receptor-like serine/threonine-kinase acting on substrates that controls floral organ abscission. Regulated by the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) family of ligands.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  466 bits (1200), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 340/1002 (33%), Positives = 505/1002 (50%), Gaps = 101/1002 (10%)

Query: 22   ELELLLSFKSTVNDPYNF--LSNW--DSSVTFC-KWNGISCQNSTHVNAIELSAKNISGK 76
            E   LL +KST  +  +   LS+W   ++ +FC  W G++C   + +  + L+   I G 
Sbjct: 50   EANALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVACSLGSIIR-LNLTNTGIEGT 108

Query: 77   ISSSIFH-LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--IGSLSR 133
                 F  LP++  ++LS N+ SG I S ++   + L + +LS N   G +P  +G LS 
Sbjct: 109  FEDFPFSSLPNLTFVDLSMNRFSGTI-SPLWGRFSKLEYFDLSINQLVGEIPPELGDLSN 167

Query: 134  LEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLI 193
            L+ L L  N L+G IP EIG  + +  + +  N+L G IP S  N+T L    L  N L 
Sbjct: 168  LDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLS 227

Query: 194  GSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSN 253
            GSIP EIG L NL+ + L  NNL+G+IP   G+L ++  L++  N L+G+IPP  GN++ 
Sbjct: 228  GSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTA 287

Query: 254  LRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFT 313
            L  L L+ NKLTG IP ++  +K+L    L  N L+G IP E+ +++++  L +  N  T
Sbjct: 288  LDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLT 347

Query: 314  GKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGS 373
            G +P S   +  L+ L L  NQ SG IP  +     LTV+ L TN  TG +P+T+C  G 
Sbjct: 348  GPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGK 407

Query: 374  LFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGND-- 431
            L  L L  N  EG +P SL  CKSL RVR + N  SG++S  F   P + F+D+S N+  
Sbjct: 408  LENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFH 467

Query: 432  ----------------------LSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS--- 466
                                  ++G I  + W MT L  L+L+ N  +G+LP+S  +   
Sbjct: 468  GQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINR 527

Query: 467  ----------------------DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLF 504
                                    LE LDLS NRFS  IP +   L  L  + +SRN L 
Sbjct: 528  ISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLD 587

Query: 505  GDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVAS 564
              IPE L+   +L  LDLS NQL G I +    +  L +LDLS N LSG+IP +   + +
Sbjct: 588  QTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLA 647

Query: 565  LVQVNISHNHFHGSLPSTGAFLAINATAVAGN-DLCGG-DSTSGLPPC------KGNK-K 615
            L  V++SHN+  G +P   AF      A  GN DLCG  ++T GL PC      K +K +
Sbjct: 648  LTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSHKDR 707

Query: 616  NQTWWLVVACFLAVLIMLALAAFAITVIRGKKILELKRVENEDGIWEVQFFNSKVGKSLT 675
            N   +++V    A++I+   A   I   +  K +E +  ++E G   +  F S  GK + 
Sbjct: 708  NLIIYILVPIIGAIIILSVCAGIFICFRKRTKQIE-EHTDSESGGETLSIF-SFDGK-VR 764

Query: 676  IDEIISSTTEENLTSR-GKKGVSSSYKVRSLANDMQFVVKKIIDV------NTITTSSFW 728
              EII +T E +     G  G    YK + L N +   VKK+ +       N  T   F 
Sbjct: 765  YQEIIKATGEFDPKYLIGTGGHGKVYKAK-LPNAI-MAVKKLNETTDSSISNPSTKQEFL 822

Query: 729  PDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN------LSWERRRK 782
             ++    + I H N+V+L G C   +  +LVYEY+E   L +VL N      L W +R  
Sbjct: 823  NEIRALTE-IRHRNVVKLFGFCSHRRNTFLVYEYMERGSLRKVLENDDEAKKLDWGKRIN 881

Query: 783  VAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA 842
            V  G+A AL ++H   SP++V  D+S G +++ G+D    ++S  G A      S N SA
Sbjct: 882  VVKGVAHALSYMHHDRSPAIVHRDISSGNILL-GEDY-EAKISDFGTAKLLKPDSSNWSA 939

Query: 843  ------YVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYS 896
                  YVAPE   +  +TEK D+Y FG++ ++++ G+ P D    +  S  +      +
Sbjct: 940  VAGTYGYVAPELAYAMKVTEKCDVYSFGVLTLEVIKGEHPGDLVSTLSSSPPD------A 993

Query: 897  DCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARP 938
               L +  D  +      I+ E++EI+ +AL C   DP ARP
Sbjct: 994  TLSLKSISDHRLPEPTPEIKEEVLEILKVALLCLHSDPQARP 1035

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  463 bits (1191), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 358/1063 (33%), Positives = 523/1063 (49%), Gaps = 151/1063 (14%)

Query: 22   ELELLLSFKSTVNDPYNFLSNWDSSVTF-CKWNGISCQNST---HVNAIELSAKNISGKI 77
            E + LL  KS   D    L NW+S+ +  C W G+ C N +    V ++ LS+  +SGK+
Sbjct: 30   EGQYLLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKL 89

Query: 78   SSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTG--PVPIGSLSRLE 135
            S SI  L H++ ++LS N LSG+IP +I + S SL  L L+NN F G  PV IG L  LE
Sbjct: 90   SPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCS-SLEILKLNNNQFDGEIPVEIGKLVSLE 148

Query: 136  ILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNIT--------------- 180
             L + NN +SG +P EIG+   L  L    N + G++P SI N+                
Sbjct: 149  NLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGS 208

Query: 181  ---------SLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLN 231
                     SL +  LA NQL G +P+EIG L+ L  + L  N  SG IP+EI + TSL 
Sbjct: 209  LPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLE 268

Query: 232  HLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGE 291
             L L  N L G IP   G+L +L +L+LY+N L G+IP+ I  L   +  D S+N L+GE
Sbjct: 269  TLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGE 328

Query: 292  IPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQ------------------------ 327
            IP E+  ++ LE+L+LF N  TG IP  L+++  L                         
Sbjct: 329  IPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLF 388

Query: 328  VLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGK 387
            +LQL+ N  SG IP  LG  ++L V+D+S N L+G+IP  LC   ++  L L +N+L G 
Sbjct: 389  MLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGN 448

Query: 388  IPNSLSTCK------------------------------------------------SLR 399
            IP  ++TCK                                                +L+
Sbjct: 449  IPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQ 508

Query: 400  RVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGK 459
            R++L +N  +GEL  E   L  +  L+IS N L+G +  + +    LQ L++  NNFSG 
Sbjct: 509  RLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGT 568

Query: 460  LPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKL- 517
            LP   GS  QLE L LS N  SGTIP + G LS L +L++  N   G IP EL S   L 
Sbjct: 569  LPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQ 628

Query: 518  VSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHG 577
            ++L+LS N+L+G IP  LS + +L  L L+ N LSG+IP +   ++SL+  N S+N   G
Sbjct: 629  IALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTG 688

Query: 578  SLPSTGAFLAINATAVAGND-LCGGD-----STSGLPPCK--GNKKNQTWWLVVACFLAV 629
             +P       I+ ++  GN+ LCG        T    P +  G         ++A   AV
Sbjct: 689  PIP---LLRNISMSSFIGNEGLCGPPLNQCIQTQPFAPSQSTGKPGGMRSSKIIAITAAV 745

Query: 630  LIMLALAAFAITVIRGKKILELKRVENEDGIWEVQ----FFNSKVGKSLTIDEIISST-- 683
            +  ++L   A+ V   ++ +       +DG         +F  K G   T  +++++T  
Sbjct: 746  IGGVSLMLIALIVYLMRRPVRTVASSAQDGQPSEMSLDIYFPPKEG--FTFQDLVAATDN 803

Query: 684  -TEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIID-----VNTITTSSFWPDVSQFGKL 737
              E  +  RG  G  + YK   L       VKK+        N    +SF  ++   G  
Sbjct: 804  FDESFVVGRGACG--TVYKA-VLPAGYTLAVKKLASNHEGGNNNNVDNSFRAEILTLGN- 859

Query: 738  IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRF 793
            I H NIV+LHG C  + +  L+YEY+    L E+L     NL W +R K+A+G A+ L +
Sbjct: 860  IRHRNIVKLHGFCNHQGSNLLLYEYMPKGSLGEILHDPSCNLDWSKRFKIALGAAQGLAY 919

Query: 794  LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---SKSINSSA----YVAP 846
            LH  C P +   D+    +++D K E H  +   GLA   D   SKS+++ A    Y+AP
Sbjct: 920  LHHDCKPRIFHRDIKSNNILLDDKFEAH--VGDFGLAKVIDMPHSKSMSAIAGSYGYIAP 977

Query: 847  ETKESKDITEKGDIYGFGLILIDLLTGKSPADA-DFGVHESIVEWAR-YCYSDCHLDTWV 904
            E   +  +TEK DIY +G++L++LLTGK+P    D G    +V W R Y   D      +
Sbjct: 978  EYAYTMKVTEKSDIYSYGVVLLELLTGKAPVQPIDQG--GDVVNWVRSYIRRDALSSGVL 1035

Query: 905  DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL 947
            D  +      I + ++ ++ +AL CT+  P ARP    V   L
Sbjct: 1036 DARLTLEDERIVSHMLTVLKIALLCTSVSPVARPSMRQVVLML 1078

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	966
255550934	972	Receptor protein kinase CLAVATA1 precurs	0.972	0.966	0.736	0.0
224089004	967	predicted protein [Populus trichocarpa]	0.984	0.983	0.725	0.0
225429912	967	PREDICTED: probably inactive leucine-ric	0.971	0.970	0.717	0.0
224141723	972	predicted protein [Populus trichocarpa]	0.966	0.960	0.708	0.0
224141725	836	predicted protein [Populus trichocarpa]	0.844	0.976	0.705	0.0
356518354	984	PREDICTED: probably inactive leucine-ric	0.977	0.959	0.611	0.0
356510037	982	PREDICTED: probably inactive leucine-ric	0.978	0.962	0.604	0.0
357466695	984	Receptor-like protein kinase [Medicago t	0.968	0.951	0.595	0.0
297822009	960	hypothetical protein ARALYDRAFT_901241 [	0.942	0.947	0.551	0.0
15225191	960	Leucine-rich receptor-like protein kinas	0.942	0.947	0.553	0.0

>gi|255550934|ref|XP_002516515.1| Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis] gi|223544335|gb|EEF45856.1| Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]

 Score = 1409 bits (3646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 697/946 (73%), Positives = 802/946 (84%), Gaps = 7/946 (0%)

Query: 22  ELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSI 81
           ELELLLSFKS+VNDP+ +L NW+SS T CKW GI+C NS+ + +I+L  KNISGK+S SI
Sbjct: 31  ELELLLSFKSSVNDPFQYLFNWNSSATVCKWQGITCNNSSRIKSIDLPGKNISGKLSLSI 90

Query: 82  FHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSN 141
           F LP+VE INLSSNQLS +IP  IF SS+S+  LNLSNNNFTGP+P GS+S LE LDLSN
Sbjct: 91  FQLPYVEIINLSSNQLSFQIPDAIFYSSSSILHLNLSNNNFTGPIPGGSISCLETLDLSN 150

Query: 142 NMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIG 201
           NMLSGKIP EIGSFS LK LDLGGNVL+G+IP+S++NITSLQ  TLASNQL+G IPRE+G
Sbjct: 151 NMLSGKIPLEIGSFSSLKFLDLGGNVLMGKIPISLTNITSLQFLTLASNQLVGQIPRELG 210

Query: 202 QLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQ 261
           Q+R+LKWIYLGYNNLSGEIP EIG LTSLNHLDLVYNNLTG IP SFGNL+NL+YLFLYQ
Sbjct: 211 QMRSLKWIYLGYNNLSGEIPNEIGRLTSLNHLDLVYNNLTGSIPVSFGNLTNLQYLFLYQ 270

Query: 262 NKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLA 321
           NKLT  IP S+  L+ L+S DLSDN+LSGEIPE V+QLQNLEILHLFSN FTGKIP +L 
Sbjct: 271 NKLTDPIPNSVFNLRKLISLDLSDNFLSGEIPELVLQLQNLEILHLFSNKFTGKIPGALC 330

Query: 322 SMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFS 381
           S+P+LQVLQLWSN F+GEIP +LGKQNN TV+DLSTN LTG+IPE LC SG+LFKLILFS
Sbjct: 331 SLPRLQVLQLWSNNFTGEIPRDLGKQNNFTVLDLSTNSLTGEIPEGLCSSGNLFKLILFS 390

Query: 382 NSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKW 441
           NSLEG+IP  L  C+SL+RVRLQ N LSGEL  +FT+LPLVYFLDIS N+ SGR+  +KW
Sbjct: 391 NSLEGEIPKDLGACRSLKRVRLQENNLSGELPQDFTKLPLVYFLDISSNNFSGRLESRKW 450

Query: 442 EMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRN 501
           EMTSLQMLNLA N FSG LPDSFGSDQ+ENLDLS+NRFSGTIPR+  +LSELMQLK+S N
Sbjct: 451 EMTSLQMLNLARNKFSGGLPDSFGSDQIENLDLSQNRFSGTIPRTLRKLSELMQLKLSGN 510

Query: 502 KLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGR 561
           KL G+IP+ELSSCKKLVSLDLS+NQL+G IP S SEMPVL QLDLS+NQLSG IP  LG 
Sbjct: 511 KLSGEIPDELSSCKKLVSLDLSDNQLNGQIPDSFSEMPVLSQLDLSQNQLSGDIPTNLGG 570

Query: 562 VASLVQVNISHNHFHGSLPSTGAFLAINATAVAGND-LCGGDSTSGLPPCKGNKKNQTWW 620
           V SLVQVNISHNHFHGSLPSTGAFLAINA+AVAGN+ LCGGD++SGLPPC+   KN T W
Sbjct: 571 VESLVQVNISHNHFHGSLPSTGAFLAINASAVAGNELLCGGDTSSGLPPCRRVIKNPTRW 630

Query: 621 LVVACFLAVLIMLALAAFAITVIRGKKILELKRVENEDGIWEVQFFNSKVGKSLTIDEII 680
             +AC L   ++L+L AF    IRG+K LELKRVENEDGIWE+QFF SKV KS+T+++I+
Sbjct: 631 FYIACILGAFLVLSLVAFGFVFIRGRKNLELKRVENEDGIWELQFFQSKVSKSVTMEDIL 690

Query: 681 SSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMH 740
           SS  EEN+ SRGKKG+  SYK +S+ N + F+VK+I DVN+I +S+FWPD + +GKL  H
Sbjct: 691 SSKREENIISRGKKGL--SYKGKSIINGVHFMVKEINDVNSI-SSNFWPDTADYGKL-QH 746

Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSP 800
           PNIV+L G+CRSE+ AYLVYEYIEGK LSE+LRNLSWERRRK+A GIAKALRFLH HCSP
Sbjct: 747 PNIVKLIGMCRSEQGAYLVYEYIEGKNLSEILRNLSWERRRKIATGIAKALRFLHCHCSP 806

Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDI 860
           +V+ G +SP K+I+DG+DEPHLRLS+P   +CTD K   SSAYVAPET++SKDITEK D+
Sbjct: 807 NVLVGYMSPEKIIIDGQDEPHLRLSLPE-PFCTDVKCFISSAYVAPETRDSKDITEKSDM 865

Query: 861 YGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIV 920
           YGFGLILI LLTGKSPAD +FGVHESIVEWARYCYSDCHLD WVDP I+GHV   QNEIV
Sbjct: 866 YGFGLILIQLLTGKSPADPEFGVHESIVEWARYCYSDCHLDMWVDPAIKGHVLVNQNEIV 925

Query: 921 EIMNLALHCTAGDPTARPCASDVTKTLESCFR-ISSCVSGLKFSSP 965
           E MNLALHCTA DPTARPCASD  KTLES  R  SSCV+ LKFSSP
Sbjct: 926 EAMNLALHCTATDPTARPCASDAFKTLESALRTTSSCVTKLKFSSP 971

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089004|ref|XP_002308597.1| predicted protein [Populus trichocarpa] gi|222854573|gb|EEE92120.1| predicted protein [Populus trichocarpa]

 Score = 1392 bits (3602), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 699/964 (72%), Positives = 812/964 (84%), Gaps = 13/964 (1%)

Query: 5   SILFMFLFL----SFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNS 60
           S+LFMF FL            ELELLLSFKS++NDP  +LSNW+ S TFCKW GI+C NS
Sbjct: 11  SMLFMFWFLVLNSRMLHADNQELELLLSFKSSLNDPLKYLSNWNPSATFCKWQGITCTNS 70

Query: 61  THVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNN 120
           + +  IELS KNISGKISSSIF LP++++I+LSSNQLSG++P DIFSSS SLRFLNLSNN
Sbjct: 71  SRITVIELSGKNISGKISSSIFQLPYIQTIDLSSNQLSGKLPDDIFSSS-SLRFLNLSNN 129

Query: 121 NFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNIT 180
           NFTGP+P GS+  LE LDLSNNMLSGKIP+EIGSFS LK LDLGGNVLVG+IPLS++N+T
Sbjct: 130 NFTGPIPNGSIFLLETLDLSNNMLSGKIPQEIGSFSSLKFLDLGGNVLVGKIPLSVTNLT 189

Query: 181 SLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNL 240
           SL++ TLASNQL+G IP E+GQ+R+LKWIYLGYNNLSGEIP E+G LTSLNHLDLVYNNL
Sbjct: 190 SLEVLTLASNQLVGQIPSELGQMRSLKWIYLGYNNLSGEIPIELGQLTSLNHLDLVYNNL 249

Query: 241 TGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQ 300
           TGQIP S GNLSNL+YLFLYQN L G IPKSI GL  L+S DLSDN LSGEIPE +I+L+
Sbjct: 250 TGQIPSSLGNLSNLQYLFLYQNMLAGPIPKSIFGLTKLISLDLSDNSLSGEIPELIIKLK 309

Query: 301 NLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFL 360
           NLEILHLFSNNFTGKIP +L+S+P+LQ+LQLWSN+ SGEIP +LGK+NNLTV+DLS+N L
Sbjct: 310 NLEILHLFSNNFTGKIPVALSSLPRLQILQLWSNKLSGEIPKDLGKRNNLTVLDLSSNSL 369

Query: 361 TGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLP 420
           TG+IPE LC SG+LFKLILFSNSLE +IP SLSTC SLRRVRLQ+N LSGELSSEFT+LP
Sbjct: 370 TGRIPEGLCSSGNLFKLILFSNSLEDEIPKSLSTCNSLRRVRLQDNSLSGELSSEFTKLP 429

Query: 421 LVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFS 480
           LVYFLDIS N+LSGRI  +KWEM SLQML+LA N+F G LPDSFGS+ LENLDLS+N FS
Sbjct: 430 LVYFLDISSNNLSGRIDSRKWEMPSLQMLSLARNSFLGGLPDSFGSENLENLDLSQNLFS 489

Query: 481 GTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPV 540
           G IPR FG LSE+MQL++S+NK+ G+IP+ELSSC+KLVSLDLS+N+LSG IPAS SEMPV
Sbjct: 490 GAIPRKFGSLSEIMQLRLSKNKISGEIPDELSSCEKLVSLDLSHNKLSGQIPASFSEMPV 549

Query: 541 LGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGNDLCG 600
           LG LDLS N+LSGKIP  LGRV SLVQVNISHNHFHGSLPSTGAFLAINA+A+AGNDLCG
Sbjct: 550 LGLLDLSHNELSGKIPANLGRVESLVQVNISHNHFHGSLPSTGAFLAINASAIAGNDLCG 609

Query: 601 GDSTSGLPPCKGNKKNQTWWLVVACFLAVLIMLALAAFAITVIRGKKILELKRVENEDGI 660
           GD TSGLPPC+   K+  WW  VAC L  L++LAL AF    IRG++ LELKRVENEDG 
Sbjct: 610 GDKTSGLPPCR-RVKSPMWWFYVACSLGALVLLALVAFGFVFIRGQRNLELKRVENEDGT 668

Query: 661 WEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN 720
           WE+QFFNSKV KS+ ID+I+ S  EENL SRGKKG  +SYK +S+ NDM+F+VKK+ DVN
Sbjct: 669 WELQFFNSKVSKSIAIDDILLSMKEENLISRGKKG--ASYKGKSITNDMEFIVKKMNDVN 726

Query: 721 TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERR 780
           +I  S    ++S+ GKL  HPNIV L G+C+S K AY++YEYIEGK LSEVL NLSWERR
Sbjct: 727 SIPLS----EISELGKL-QHPNIVNLFGLCQSNKVAYVIYEYIEGKSLSEVLLNLSWERR 781

Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINS 840
           RK+AIGIAKALRFLH +CSPSV+AG +SP K+I+DGKDEP L LS+P L     +K   S
Sbjct: 782 RKIAIGIAKALRFLHCYCSPSVLAGYMSPEKIIIDGKDEPRLILSLPSLLCIETTKCFIS 841

Query: 841 SAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHL 900
           SAYVAPET+E+KDITEK D+YGFGLILI+LLTGK PADA+FG HESIVEWARYCYSDCHL
Sbjct: 842 SAYVAPETRETKDITEKSDMYGFGLILIELLTGKGPADAEFGGHESIVEWARYCYSDCHL 901

Query: 901 DTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISSCVSGL 960
           D W+DP I G+ S  QNE++E MNLAL CTA +PTARPCA++V+KTLES  R SSCV GL
Sbjct: 902 DMWIDPMISGNASINQNELIETMNLALQCTATEPTARPCANEVSKTLESALRKSSCVLGL 961

Query: 961 KFSS 964
           KFSS
Sbjct: 962 KFSS 965

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429912|ref|XP_002281133.1| PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 [Vitis vinifera] gi|296081832|emb|CBI20837.3| unnamed protein product [Vitis vinifera]

 Score = 1344 bits (3478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 678/945 (71%), Positives = 802/945 (84%), Gaps = 7/945 (0%)

Query: 22  ELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSI 81
           E+ELLLSFK+++NDP  FLSNW+SSV FC W GI C NS+HV++I+LS KNISG+IS   
Sbjct: 30  EIELLLSFKASINDPLGFLSNWNSSVDFCNWYGILCTNSSHVSSIDLSGKNISGEISPVF 89

Query: 82  FHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSN 141
           F LP++E++NLS+N LSG IP +I S   SLR+LNLSNNN TG +P GS S LE LDLSN
Sbjct: 90  FGLPYIETVNLSNNALSGGIPGNI-SLCYSLRYLNLSNNNLTGSMPRGSASGLEALDLSN 148

Query: 142 NMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIG 201
           N++SG+IP ++G FS LKVLDLGGN LVG+IP SI+NITSL+  TLASNQL+G IPRE+G
Sbjct: 149 NVISGEIPADMGLFSRLKVLDLGGNFLVGKIPNSIANITSLEFLTLASNQLVGEIPRELG 208

Query: 202 QLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQ 261
           ++++LKWIYLGYNNLSG IPKEIG+LTSLNHLDLVYNNLTG+IP S GNLS+L +LFLYQ
Sbjct: 209 RMKSLKWIYLGYNNLSGGIPKEIGELTSLNHLDLVYNNLTGEIPSSLGNLSDLHFLFLYQ 268

Query: 262 NKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLA 321
           NKL+GSIP SI  LK L+S DLSDN LSGEIPE VIQLQNLEILHLF+N+FTGKIP +LA
Sbjct: 269 NKLSGSIPPSIFDLKKLISLDLSDNSLSGEIPELVIQLQNLEILHLFANDFTGKIPRALA 328

Query: 322 SMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFS 381
           S+P+LQ+LQLWSN+ SGEIP NLGKQNNLTV+DLSTN L+G+IPE+LC+SG LFKLILFS
Sbjct: 329 SLPRLQILQLWSNKLSGEIPKNLGKQNNLTVLDLSTNNLSGEIPESLCNSGRLFKLILFS 388

Query: 382 NSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKW 441
           NSLEG++P SLS C+SLRRVRLQ+N  SGELSSEF +LPLVYFLDIS N+L+G+I +++W
Sbjct: 389 NSLEGEVPKSLSDCRSLRRVRLQSNHFSGELSSEFMKLPLVYFLDISDNNLTGKISDRRW 448

Query: 442 EMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRN 501
           +M SLQML+LA N F G LP SFG+ +LENLDLSEN+FSG +P SFG LSELMQLK+S N
Sbjct: 449 DMPSLQMLSLARNRFFGNLPQSFGASKLENLDLSENQFSGAVPSSFGNLSELMQLKLSEN 508

Query: 502 KLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGR 561
            L GDIPEELSSCKKLVSL+LS+NQLSGHIPAS S+MPVLGQLDLS+NQLSGKIP  LGR
Sbjct: 509 MLSGDIPEELSSCKKLVSLNLSHNQLSGHIPASFSDMPVLGQLDLSQNQLSGKIPPNLGR 568

Query: 562 VASLVQVNISHNHFHGSLPSTGAFLAINATAVAGNDLCGGDSTSGLPPCKGNKKNQTWWL 621
           V SLVQVN+S+NH HGSLPSTGAFLAIN+++V+GN+LCGGD+TSGLPPCK   K   WW 
Sbjct: 569 VESLVQVNLSNNHLHGSLPSTGAFLAINSSSVSGNNLCGGDTTSGLPPCK-RLKTPVWWF 627

Query: 622 VVACFLAVLIMLALAAFAITVIRGKKILELKRVENEDGIWEVQFFNSKVGKSLTIDEIIS 681
            V C L VL++LALAAFA+  IR +   ELKRVE+EDG+WE+QFF+SK  KS+TI  I+S
Sbjct: 628 FVTCLLVVLVVLALAAFAVVFIRRRDGSELKRVEHEDGMWEMQFFDSKASKSITIKGILS 687

Query: 682 STTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHP 741
           STTE N+ SRG+KG+  SYK ++   +MQFVVK+I D N+I  SSFW + +QFGKL  H 
Sbjct: 688 STTENNVISRGRKGI--SYKGKTKNGEMQFVVKEINDSNSI-PSSFWTEFAQFGKL-RHS 743

Query: 742 NIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPS 801
           N+V+L G+CRS+K  YL+ EYIEGK LSEVLR+LSWERR+K+AIGI+KALRFLH +CSPS
Sbjct: 744 NVVKLIGLCRSQKCGYLISEYIEGKNLSEVLRSLSWERRQKIAIGISKALRFLHCNCSPS 803

Query: 802 VVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIY 861
           +V G++SP K+I+DGKDEPHLRLS P L  CTD K I SSAY APET+E+KD TEK DIY
Sbjct: 804 MVVGNMSPQKIIIDGKDEPHLRLSPP-LMVCTDFKCIISSAYFAPETRETKDTTEKSDIY 862

Query: 862 GFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVE 921
           GFGLILI+L+TGKSP DA+FGVH SIVEW RYCYSDCHLD W+DP IR  VSS QN++VE
Sbjct: 863 GFGLILIELMTGKSPTDAEFGVHGSIVEWGRYCYSDCHLDMWIDPIIRAQVSSNQNQMVE 922

Query: 922 IMNLALHCTAGDPTARPCASDVTKTLESCFRISSCVSGLKFSSPV 966
           IMNLALHCTA DPTARPCASDV KTLES  R SSCVSGLKFSSP+
Sbjct: 923 IMNLALHCTATDPTARPCASDVLKTLESVLRSSSCVSGLKFSSPI 967

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141723|ref|XP_002324214.1| predicted protein [Populus trichocarpa] gi|222865648|gb|EEF02779.1| predicted protein [Populus trichocarpa]

 Score = 1340 bits (3467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/943 (70%), Positives = 791/943 (83%), Gaps = 9/943 (0%)

Query: 22  ELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSI 81
           ELELLLSFK+++NDP  +LSNW++S TFC W GI+C NS+ ++ IELS KNISGKISS I
Sbjct: 33  ELELLLSFKTSLNDPSKYLSNWNTSATFCNWLGITCTNSSRISGIELSGKNISGKISSLI 92

Query: 82  FHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSN 141
           FH P++++I+LSSNQLSG++P DIF SS SLR+LNLSNNNFTGP+P GS+  LE LDLSN
Sbjct: 93  FHFPYIQTIDLSSNQLSGKLPDDIFLSS-SLRYLNLSNNNFTGPIPSGSIPLLETLDLSN 151

Query: 142 NMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIG 201
           NMLSGKIP+EIGSF  LK LDLGGN LVG+IP SI+ +TSL++FTLASNQL+G IP E+G
Sbjct: 152 NMLSGKIPQEIGSFFSLKFLDLGGNALVGKIPPSITKLTSLKVFTLASNQLVGQIPHELG 211

Query: 202 QLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQ 261
           Q+R+LK IYLGYNNLSGEIP EIG L SLNHLDLVYNNL GQIP S GNL++L+YLFLYQ
Sbjct: 212 QMRSLKLIYLGYNNLSGEIPTEIGQLISLNHLDLVYNNLIGQIPSSLGNLTDLQYLFLYQ 271

Query: 262 NKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLA 321
           NK TG IPKSI GL  L+S DLSDN+LSGEIPE +IQL+NLEILHLFSN+FTGKIP +L+
Sbjct: 272 NKFTGPIPKSIFGLTKLISLDLSDNFLSGEIPELIIQLKNLEILHLFSNHFTGKIPVALS 331

Query: 322 SMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFS 381
           S+P+LQVLQLWSN+ SGEIP +LGK NNLTV+DLSTN L+G+IPE LC SG+LFKLILFS
Sbjct: 332 SLPRLQVLQLWSNKLSGEIPKDLGKHNNLTVLDLSTNSLSGRIPEGLCSSGNLFKLILFS 391

Query: 382 NSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKW 441
           NSLEG+IP SLS CKS+RR+RLQ+N LSGELSSEFT+LPLVYFLDIS N L GRI  +KW
Sbjct: 392 NSLEGEIPKSLSACKSMRRIRLQDNSLSGELSSEFTKLPLVYFLDISANKLLGRIDSRKW 451

Query: 442 EMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRN 501
           EM SLQML+LA N+F G LPDSFGSD LENLDLS N+FSG IP  FG LSELMQL +S+N
Sbjct: 452 EMPSLQMLSLARNSFFGGLPDSFGSDNLENLDLSHNQFSGAIPNKFGSLSELMQLNLSKN 511

Query: 502 KLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGR 561
           KL G+IP+ELSSC+KLVSLDLS N+LSG IPA  +EMPVLGQLDLS N+LSG++P  LG+
Sbjct: 512 KLSGEIPDELSSCEKLVSLDLSQNKLSGQIPAGFAEMPVLGQLDLSYNELSGEVPANLGK 571

Query: 562 VASLVQVNISHNHFHGSLPSTGAFLAINATAVAGNDLCGGDSTSGLPPCKGNKKNQTWWL 621
             SLVQVNISHNHFHGSLPSTGAFLAINA+AVAGNDLCGGD TSGLPPC+   K+  WW 
Sbjct: 572 EESLVQVNISHNHFHGSLPSTGAFLAINASAVAGNDLCGGDKTSGLPPCR-RVKSPLWWF 630

Query: 622 VVACFLAVLIMLALAAFAITVIRGKKILELKRVENEDGIWEVQFFNSKVGKSLTIDEIIS 681
            VAC L  L++LAL A      RGK+  ELKRVENEDG WE+  FNSKV +S+ I++II 
Sbjct: 631 YVACSLGALVLLALVASGFVFFRGKRNSELKRVENEDGTWELLLFNSKVSRSIAIEDIIM 690

Query: 682 STTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHP 741
           S  EENL SRGK+G  +SYK +S+ANDMQF++KK  DVN+I  S    +V++ GKL  HP
Sbjct: 691 SLKEENLISRGKEG--ASYKGKSIANDMQFILKKTNDVNSIPPS----EVAELGKL-QHP 743

Query: 742 NIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPS 801
           NIV+L G+CRS K AY+V+EYI+GK+LSEVLRNLSWERR+++AIGIAKALRFLH +CSP 
Sbjct: 744 NIVKLFGLCRSNKGAYVVHEYIDGKQLSEVLRNLSWERRQQIAIGIAKALRFLHCYCSPR 803

Query: 802 VVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIY 861
           V+ G +SPGK+IVDGK  PHL +S+PG     ++K   SSAYVAPET+E+KDI+EK D+Y
Sbjct: 804 VLVGYLSPGKIIVDGKYVPHLIVSLPGSLCIDNTKCFISSAYVAPETRETKDISEKSDMY 863

Query: 862 GFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVE 921
           GFGL+LI+LLTGK PADA+FGVHESIV+WARYCYSDCHLD W+DP IR + S  +NE+VE
Sbjct: 864 GFGLVLIELLTGKGPADAEFGVHESIVKWARYCYSDCHLDMWIDPMIRRNASINENEMVE 923

Query: 922 IMNLALHCTAGDPTARPCASDVTKTLESCFRISSCVSGLKFSS 964
            MNLAL CTA +PTARPCA++V+KTLES  + SSCV GLKFSS
Sbjct: 924 TMNLALQCTATEPTARPCANEVSKTLESASKTSSCVLGLKFSS 966

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141725|ref|XP_002324215.1| predicted protein [Populus trichocarpa] gi|222865649|gb|EEF02780.1| predicted protein [Populus trichocarpa]

 Score = 1148 bits (2970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/825 (70%), Positives = 688/825 (83%), Gaps = 9/825 (1%)

Query: 22  ELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSI 81
           ELELLLSFK+++NDP  +LSNW++S TFC W GI+C NS+ ++ IELS KNISGKISS I
Sbjct: 8   ELELLLSFKTSLNDPSKYLSNWNTSATFCNWLGITCTNSSRISGIELSGKNISGKISSLI 67

Query: 82  FHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSN 141
           FH P++++I+LSSNQLSG++P DIF SS SLR+LNLSNNNFTGP+P GS+  LE LDLSN
Sbjct: 68  FHFPYIQTIDLSSNQLSGKLPDDIFLSS-SLRYLNLSNNNFTGPIPSGSIPLLETLDLSN 126

Query: 142 NMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIG 201
           NMLSGKIP+EIGSF  LK LDLGGN LVG+IP SI+ +TSL++FTLASNQL+G IP E+G
Sbjct: 127 NMLSGKIPQEIGSFFSLKFLDLGGNALVGKIPPSITKLTSLKVFTLASNQLVGQIPHELG 186

Query: 202 QLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQ 261
           Q+R+LK IYLGYNNLSGEIP EIG L SLNHLDLVYNNL GQIP S GNL++L+YLFLYQ
Sbjct: 187 QMRSLKLIYLGYNNLSGEIPTEIGQLISLNHLDLVYNNLIGQIPSSLGNLTDLQYLFLYQ 246

Query: 262 NKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLA 321
           NK TG IPKSI GL  L+S DLSDN+LSGEIPE +IQL+NLEILHLFSN+FTGKIP +L+
Sbjct: 247 NKFTGPIPKSIFGLTKLISLDLSDNFLSGEIPELIIQLKNLEILHLFSNHFTGKIPVALS 306

Query: 322 SMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFS 381
           S+P+LQVLQLWSN+ SGEIP +LGK NNLTV+DLSTN L+G+IPE LC SG+LFKLILFS
Sbjct: 307 SLPRLQVLQLWSNKLSGEIPKDLGKHNNLTVLDLSTNSLSGRIPEGLCSSGNLFKLILFS 366

Query: 382 NSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKW 441
           NSLEG+IP SLS CKS+RR+RLQ+N LSGELSSEFT+LPLVYFLDIS N L GRI  +KW
Sbjct: 367 NSLEGEIPKSLSACKSMRRIRLQDNSLSGELSSEFTKLPLVYFLDISANKLLGRIDSRKW 426

Query: 442 EMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRN 501
           EM SLQML+LA N+F G LPDSFGSD LENLDLS N+FSG IP  FG LSELMQL +S+N
Sbjct: 427 EMPSLQMLSLARNSFFGGLPDSFGSDNLENLDLSHNQFSGAIPNKFGSLSELMQLNLSKN 486

Query: 502 KLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGR 561
           KL G+IP+ELSSC+KLVSLDLS N+LSG IPA  +EMPVLGQLDLS N+LSG++P  LG+
Sbjct: 487 KLSGEIPDELSSCEKLVSLDLSQNKLSGQIPAGFAEMPVLGQLDLSYNELSGEVPANLGK 546

Query: 562 VASLVQVNISHNHFHGSLPSTGAFLAINATAVAGNDLCGGDSTSGLPPCKGNKKNQTWWL 621
             SLVQVNISHNHFHGSLPSTGAFLAINA+AVAGNDLCGGD TSGLPPC+   K+  WW 
Sbjct: 547 EESLVQVNISHNHFHGSLPSTGAFLAINASAVAGNDLCGGDKTSGLPPCR-RVKSPLWWF 605

Query: 622 VVACFLAVLIMLALAAFAITVIRGKKILELKRVENEDGIWEVQFFNSKVGKSLTIDEIIS 681
            VAC L  L++LAL A      RGK+  ELKRVENEDG WE+  FNSKV +S+ I++II 
Sbjct: 606 YVACSLGALVLLALVASGFVFFRGKRNSELKRVENEDGTWELLLFNSKVSRSIAIEDIIM 665

Query: 682 STTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHP 741
           S  EENL SRGK+G  +SYK +S+ANDMQF++KK  DVN+I  S    +V++ GKL  HP
Sbjct: 666 SLKEENLISRGKEG--ASYKGKSIANDMQFILKKTNDVNSIPPS----EVAELGKL-QHP 718

Query: 742 NIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPS 801
           NIV+L G+CRS K AY+V+EYI+GK+LSEVLRNLSWERR+++AIGIAKALRFLH +CSP 
Sbjct: 719 NIVKLFGLCRSNKGAYVVHEYIDGKQLSEVLRNLSWERRQQIAIGIAKALRFLHCYCSPR 778

Query: 802 VVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYVAP 846
           V+ G +SPGK+IVDGK  PHL +S+PG     ++K   SSAYVAP
Sbjct: 779 VLVGYLSPGKIIVDGKYVPHLIVSLPGSLCIDNTKCFISSAYVAP 823

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518354|ref|XP_003527844.1| PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790-like [Glycine max]

 Score = 1142 bits (2954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/971 (61%), Positives = 745/971 (76%), Gaps = 27/971 (2%)

Query: 7   LFMFLFLSFCTCHG--AELELLLSFKSTVNDPYNFLSNW---DSSVTFCKWNGISCQNST 61
           LF+F+ L+F   HG   E++LLLSFK +++DP +FLSNW    SS T CKW+GI+C N+ 
Sbjct: 20  LFVFM-LNFHLSHGHQQEVQLLLSFKGSLHDPLHFLSNWVSFTSSATICKWHGITCDNNN 78

Query: 62  HVN-----AIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIP-SDIFSSSNSLRFL 115
           +VN     A+ +S KNI+G++SSSIF LP+V +++LS+NQL GEI  +   +S + +R+L
Sbjct: 79  NVNSSHVNAVVISGKNITGEVSSSIFQLPYVTNLDLSNNQLIGEITFTHSLNSLSPIRYL 138

Query: 116 NLSNNNFTG--PVPIGSL--SRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGE 171
           NLSNNN TG  P P+ S+  S LE LDLSNNM SG IP++IG  S L+ LDLGGNVLVG+
Sbjct: 139 NLSNNNLTGSLPQPLFSVLFSNLETLDLSNNMFSGNIPDQIGLLSSLRYLDLGGNVLVGK 198

Query: 172 IPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLN 231
           IP S++N+T+L+  TLASNQL+  IP EIG +++LKWIYLGYNNLS EIP  IG+L SLN
Sbjct: 199 IPNSVTNMTTLEYLTLASNQLVDKIPEEIGVMKSLKWIYLGYNNLSDEIPSSIGELLSLN 258

Query: 232 HLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGE 291
           HLDLVYNNLTG IP S G+L+ L+YLFLYQNKL+G IP SI  LK L+S DLSDN LSGE
Sbjct: 259 HLDLVYNNLTGPIPHSLGHLTELQYLFLYQNKLSGPIPGSIFELKKLISLDLSDNSLSGE 318

Query: 292 IPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLT 351
           I E V+QLQ LEILHLFSN FTG IP  +AS+P+LQVLQLWSN  +GEIP  LG+ +NLT
Sbjct: 319 ISERVVQLQRLEILHLFSNKFTGNIPKGVASLPRLQVLQLWSNGLTGEIPEELGRHSNLT 378

Query: 352 VIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGE 411
           V+DLSTN L+GKIP+++C SGSLFKLILFSNS EG+IP SL++C+SLRRVRLQNN  SG+
Sbjct: 379 VLDLSTNNLSGKIPDSICYSGSLFKLILFSNSFEGEIPKSLTSCRSLRRVRLQNNTFSGK 438

Query: 412 LSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLEN 471
           L SE + LP +YFLDISGN LSGRI ++KW M SLQML+LA NNFSG++P++FG+ +LE+
Sbjct: 439 LPSELSTLPEIYFLDISGNQLSGRIDDRKWHMPSLQMLSLANNNFSGEIPNTFGTQKLED 498

Query: 472 LDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHI 531
           LDLS N+FSG+IP  F  LSEL++LK+  NKLFGDIPEE+ SCKKLVSLDLS+N LSG I
Sbjct: 499 LDLSHNQFSGSIPLGFKSLSELVELKLRNNKLFGDIPEEICSCKKLVSLDLSHNHLSGEI 558

Query: 532 PASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINAT 591
           P  LSEMPVLG LDLSENQ SG+IPQ LG V SLVQVNISHNHFHG LPST AFLAINA+
Sbjct: 559 PMKLSEMPVLGLLDLSENQFSGEIPQNLGSVESLVQVNISHNHFHGRLPSTSAFLAINAS 618

Query: 592 AVAGNDLC--GGDSTSGLPPCKGNKKNQTWWLVVACFLAVLIMLALAAFAITVIRGKK-I 648
           AV GN+LC   GD++SGLPPCK N +N TW  ++ CFL  L+  A A+F +  +R +K  
Sbjct: 619 AVTGNNLCDRDGDASSGLPPCKNNNQNPTWLFIMLCFLLALVAFAAASFLVFYVRRRKNF 678

Query: 649 LELKRVENEDGIWEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLAND 708
            E++RVENEDG WEVQFF+SK  K + +D+++S+  E N+ S+G+  V  SY+ + + ND
Sbjct: 679 SEVRRVENEDGTWEVQFFDSKAAKLINVDDVLSAVKEGNVMSKGRNWV--SYQGKCMEND 736

Query: 709 MQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL 768
           MQFVVK+I D+N++   S W +  + GK + HPNIV L   CR  K  YLVYE+ EG EL
Sbjct: 737 MQFVVKEISDLNSLPM-SMWEETVKIGK-VRHPNIVNLIAACRCGKRGYLVYEHEEGDEL 794

Query: 769 SEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPG 828
           SE+  +LSW+RR K+A+GIAKAL+FLH H S  V+ G+VSP  V VD K  P L+++ P 
Sbjct: 795 SEIANSLSWQRRCKIAVGIAKALKFLHSHVSSMVLVGEVSPEIVWVDAKGVPRLKVT-PP 853

Query: 829 LAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPAD--ADFGVHES 886
           +  C D+KS  SS YVA E  E K++TEK +IYGFG++LI+LLTG+S  D  A  G+H++
Sbjct: 854 MMPCLDAKSFVSSPYVAQEAIEKKNVTEKSEIYGFGVVLIELLTGRSAMDIEAGNGMHKT 913

Query: 887 IVEWARYCYSDCHLDTWVDPFIRG-HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK 945
           IVEWARYCYSDCHLD W+DP ++G    S QN+IVE+MNLALHCTA DPTARPCA DV K
Sbjct: 914 IVEWARYCYSDCHLDVWIDPVLKGVDALSYQNDIVEMMNLALHCTATDPTARPCARDVLK 973

Query: 946 TLESCFRISSC 956
            LE+  R + C
Sbjct: 974 ALETIHRTTFC 984

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510037|ref|XP_003523747.1| PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790-like [Glycine max]

 Score = 1135 bits (2937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/970 (60%), Positives = 742/970 (76%), Gaps = 25/970 (2%)

Query: 7   LFMFLF-LSFCTCHG--AELELLLSFKSTVNDPYNFLSNW---DSSVTFCKWNGISCQN- 59
           +F+F+F L+F    G   E++LLLSFK++++DP +FLSNW    SS T CKW+GI+C N 
Sbjct: 18  IFLFMFMLNFILSDGDQHEVQLLLSFKASLHDPLHFLSNWVSFTSSATICKWHGINCDNN 77

Query: 60  --STHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIP-SDIFSSSNSLRFLN 116
             S+HVNA+ LS KNI+G++SSSIF LP++ +++LS+NQL GEI  +   +S + +R+LN
Sbjct: 78  ANSSHVNAVVLSGKNITGEVSSSIFQLPYLTNLDLSNNQLVGEITFTHSHNSLSQIRYLN 137

Query: 117 LSNNNFTG--PVPIGSL--SRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEI 172
           LSNNN TG  P P+ S+  S LE LDLSNNM SG IP++IG  S L+ LDLGGNVLVG+I
Sbjct: 138 LSNNNLTGSLPQPLFSVLFSNLETLDLSNNMFSGNIPDQIGLLSSLRYLDLGGNVLVGKI 197

Query: 173 PLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNH 232
           P SI+N+T+L+  TLASNQL+  IP EIG +++LKWIYLGYNNLSGEIP  IG+L SLNH
Sbjct: 198 PNSITNMTALEYLTLASNQLVDKIPEEIGAMKSLKWIYLGYNNLSGEIPSSIGELLSLNH 257

Query: 233 LDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEI 292
           LDLVYNNLTG IP S G+L+ L+YLFLYQNKL+G IP SI  LK ++S DLSDN LSGEI
Sbjct: 258 LDLVYNNLTGLIPHSLGHLTELQYLFLYQNKLSGPIPGSIFELKKMISLDLSDNSLSGEI 317

Query: 293 PEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTV 352
            E V++LQ+LEILHLFSN FTGKIP  +AS+P+LQVLQLWSN  +GEIP  LGK +NLTV
Sbjct: 318 SERVVKLQSLEILHLFSNKFTGKIPKGVASLPRLQVLQLWSNGLTGEIPEELGKHSNLTV 377

Query: 353 IDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGEL 412
           +DLSTN L+GKIP+++C SGSLFKLILFSNS EG+IP SL++C+SLRRVRLQ N+ SG L
Sbjct: 378 LDLSTNNLSGKIPDSICYSGSLFKLILFSNSFEGEIPKSLTSCRSLRRVRLQTNKFSGNL 437

Query: 413 SSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENL 472
            SE + LP VYFLDISGN LSGRI ++KW+M SLQML+LA NNFSG++P+SFG+  LE+L
Sbjct: 438 PSELSTLPRVYFLDISGNQLSGRIDDRKWDMPSLQMLSLANNNFSGEIPNSFGTQNLEDL 497

Query: 473 DLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIP 532
           DLS N FSG+IP  F  L EL++L +S NKLFG+IPEE+ SCKKLVSLDLS NQLSG IP
Sbjct: 498 DLSYNHFSGSIPLGFRSLPELVELMLSNNKLFGNIPEEICSCKKLVSLDLSQNQLSGEIP 557

Query: 533 ASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATA 592
             LSEMPVLG LDLS+NQ SG+IPQ LG V SLVQVNISHNHFHGSLPSTGAFLAINA+A
Sbjct: 558 VKLSEMPVLGLLDLSQNQFSGQIPQNLGSVESLVQVNISHNHFHGSLPSTGAFLAINASA 617

Query: 593 VAGNDLC--GGDSTSGLPPCKGNKKNQTWWLVVACFLAVLIMLALAAFAITVIRGKK-IL 649
           V GN+LC   GD++SGLPPCK N +N TW  ++ CFL  L+  A A+F +  +R +K   
Sbjct: 618 VIGNNLCDRDGDASSGLPPCKNNNQNPTWLFIMLCFLLALVAFAAASFLVLYVRKRKNFS 677

Query: 650 ELKRVENEDGIWEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDM 709
           E++RVENEDG WEV+FF SK  + + +D+++ +  E  + S+G   V   Y+ + + NDM
Sbjct: 678 EVRRVENEDGTWEVKFFYSKAARLINVDDVLKTVKEGKVVSKGTNWV--WYEGKCMENDM 735

Query: 710 QFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
           QFVVK+I D+N++   S W +  +  K + HPNI+ L   CR  K  YLVYE+ EG++LS
Sbjct: 736 QFVVKEISDLNSLPL-SMWEETVKIRK-VRHPNIINLIATCRCGKRGYLVYEHEEGEKLS 793

Query: 770 EVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL 829
           E++ +LSW+RR K+A+G+AKAL+FLH   S  ++ G+VSP  V VD K  P L+++ P L
Sbjct: 794 EIVNSLSWQRRCKIAVGVAKALKFLHSQASSMLLVGEVSPEIVWVDAKGVPRLKVT-PPL 852

Query: 830 AYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPAD--ADFGVHESI 887
             C D K   SS YVA E  E K++TEK +IYGFG++L++LLTG+S  D  A  G+H++I
Sbjct: 853 MPCLDVKGFVSSPYVAQEVIERKNVTEKSEIYGFGVMLVELLTGRSAMDIEAGNGMHKTI 912

Query: 888 VEWARYCYSDCHLDTWVDPFIR-GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT 946
           VEWARYCYSDCHLDTW+DP ++ G     QN+IVE+MNLALHCTA DPTARPCA DV K 
Sbjct: 913 VEWARYCYSDCHLDTWIDPVMKGGDALRYQNDIVEMMNLALHCTATDPTARPCARDVLKA 972

Query: 947 LESCFRISSC 956
           LE+  R + C
Sbjct: 973 LETVHRTTFC 982

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466695|ref|XP_003603632.1| Receptor-like protein kinase [Medicago truncatula] gi|355492680|gb|AES73883.1| Receptor-like protein kinase [Medicago truncatula]

 Score = 1079 bits (2790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/965 (59%), Positives = 719/965 (74%), Gaps = 29/965 (3%)

Query: 7   LFMFLFLSFCTCHG-AELELLLSFKSTVN-DPYNFLSNW--DSSVTFCKWNGISCQNSTH 62
           LFMF+ L+F + HG  E ELLLSFK+++  DP NFLSNW   SS T CKW+GI+C N +H
Sbjct: 18  LFMFM-LNFHSTHGEQEFELLLSFKASIKFDPLNFLSNWVNTSSDTICKWHGITCDNWSH 76

Query: 63  VNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSS--SNSLRFLNLSNN 120
           VN + LS KNISG++SSSIF LPHV +++LS+NQL GEI   +F+S   +SL +LNLSNN
Sbjct: 77  VNTVSLSGKNISGEVSSSIFQLPHVTNLDLSNNQLVGEI---VFNSPFLSSLLYLNLSNN 133

Query: 121 NFTGPVPIG----SLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSI 176
           N TGP+P      S   LE LDLSNNM SGKIP++IG  S L  +DLGGNVLVG+IP SI
Sbjct: 134 NLTGPLPQSLFSSSFINLETLDLSNNMFSGKIPDQIGLLSSLTYVDLGGNVLVGKIPNSI 193

Query: 177 SNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLV 236
           +N+TSL+  TLASNQLIG IP +I  ++ LKWIYLGYNNLSGEIPK IG+L SLNHL+LV
Sbjct: 194 TNLTSLESLTLASNQLIGEIPTKICLMKRLKWIYLGYNNLSGEIPKNIGNLVSLNHLNLV 253

Query: 237 YNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEV 296
           YNNLTG IP S GNL+NL+YLFLY NKLTG IPKSI  LK+L+S DLSDNYLSGEI   V
Sbjct: 254 YNNLTGPIPESLGNLTNLQYLFLYLNKLTGPIPKSIFNLKNLISLDLSDNYLSGEISNLV 313

Query: 297 IQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLS 356
           + LQ LEILHLFSNNFTGKIP+++ S+P LQVLQLWSN+ +GEIP  LG  NNLT++DLS
Sbjct: 314 VNLQKLEILHLFSNNFTGKIPNTITSLPHLQVLQLWSNKLTGEIPQTLGIHNNLTILDLS 373

Query: 357 TNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEF 416
           +N LTGKIP +LC S +L K+ILFSNSL+G+IP  L++CK+L RVRLQ+N LSG+L  E 
Sbjct: 374 SNNLTGKIPNSLCASKNLHKIILFSNSLKGEIPKGLTSCKTLERVRLQDNNLSGKLPLEI 433

Query: 417 TRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSE 476
           T+LP +Y LDISGN  SGRI ++KW M SLQMLNLA NNFSG LP+SFG +++E LDLS+
Sbjct: 434 TQLPQIYLLDISGNKFSGRINDRKWNMPSLQMLNLANNNFSGDLPNSFGGNKVEGLDLSQ 493

Query: 477 NRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLS 536
           N+FSG I   F  L EL+QLK++ N LFG  PEEL  C KLVSLDLS+N+L+G IP  L+
Sbjct: 494 NQFSGYIQIGFKNLPELVQLKLNNNNLFGKFPEELFQCNKLVSLDLSHNRLNGEIPEKLA 553

Query: 537 EMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGN 596
           +MPVLG LD+SENQ SG+IP+ LG V SLV+VNIS+NHFHG LPST AF AINA+ V GN
Sbjct: 554 KMPVLGLLDISENQFSGEIPKNLGSVESLVEVNISYNHFHGVLPSTEAFSAINASLVTGN 613

Query: 597 DLCGGDS--TSGLPPCKG-NKKNQTWWLVVACFLAVLIMLALAAFAITVIRGKKILELKR 653
            LC GD   ++GLPPCK  N+ N T   V+ CF+   +++ +    I V+R  K  E++R
Sbjct: 614 KLCDGDGDVSNGLPPCKSYNQMNSTRLFVLICFVLTALVVLVGTVVIFVLRMNKSFEVRR 673

Query: 654 -VENEDGIWEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFV 712
            VENEDG WEV FF+ K  K +TI++++SS  E  + ++G+  V  SY+ + ++N+MQFV
Sbjct: 674 VVENEDGTWEVIFFDYKASKFVTIEDVLSSVKEGKVITKGRNWV--SYEGKCVSNEMQFV 731

Query: 713 VKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
           VK+I D N+++  SFW D   FGK + H NIV++ G+ R  K  YLVYE++EGK L E++
Sbjct: 732 VKEISDTNSVSV-SFWDDTVTFGKKVRHENIVKIMGMFRCGKRGYLVYEFVEGKSLREIM 790

Query: 773 RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY- 831
             LSW RR K+A+GIAKA+ FLH  C    +  +VSP  V+VDGK  P L+L  PG+   
Sbjct: 791 HGLSWLRRWKIALGIAKAINFLHCECLWFGLGSEVSPETVLVDGKGVPRLKLDSPGIVVT 850

Query: 832 -CTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADF--GVH--ES 886
                K   SSAYVAPE +  KD+TEK +IYGFG+ILI+LLTG++  D +   G+H   +
Sbjct: 851 PVMGVKGFVSSAYVAPEERNGKDVTEKSEIYGFGVILIELLTGRNSVDIEAWNGIHYKNN 910

Query: 887 IVEWARYCYSDCHLDTWVDPFI-RGHVSSI-QNEIVEIMNLALHCTAGDPTARPCASDVT 944
           IVEWARYCYSDCHLDTW+D  + +G  SS  QN+IVE MNLALHCTA DPT RPCA D+ 
Sbjct: 911 IVEWARYCYSDCHLDTWIDSVVMKGEDSSTYQNDIVETMNLALHCTANDPTTRPCARDIL 970

Query: 945 KTLES 949
           K LE+
Sbjct: 971 KALET 975

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822009|ref|XP_002878887.1| hypothetical protein ARALYDRAFT_901241 [Arabidopsis lyrata subsp. lyrata] gi|297324726|gb|EFH55146.1| hypothetical protein ARALYDRAFT_901241 [Arabidopsis lyrata subsp. lyrata]

 Score = 1003 bits (2593), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/955 (55%), Positives = 674/955 (70%), Gaps = 45/955 (4%)

Query: 8   FMFLFLSFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVT--FCKWNGISCQNSTHVNA 65
             FLFL+F   H  ELELLLSFKS++ DP   LS+W  S T   C W G+ C N + V +
Sbjct: 17  LFFLFLNFSCLHANELELLLSFKSSIQDPLKHLSSWSYSSTNDVCLWTGVVCNNFSRVVS 76

Query: 66  IELSAKNISGKI-SSSIFHLPHVESINLSSNQLSGEIPSDIFSSSN-SLRFLNLSNNNFT 123
           ++LS KNISG+I +S+ F LP + +INLS+N LSG IP DIF++S+ SLR+LNLSNNNF+
Sbjct: 77  LDLSGKNISGQILTSATFRLPFLRTINLSNNNLSGPIPQDIFTTSSPSLRYLNLSNNNFS 136

Query: 124 GPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQ 183
           G +  G L  L  LDLSNNM +G+I  +IG FS L+VLDLGGNVL G +P  + N++ L+
Sbjct: 137 GSISRGFLPNLYTLDLSNNMFTGEIYNDIGFFSNLRVLDLGGNVLTGHVPAYLGNLSKLE 196

Query: 184 IFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQ 243
             TLASNQ  G +P E+G+++NLKWIYLGYNNLSGEIP +IG L+SLNHLDLVYNNL+G 
Sbjct: 197 FLTLASNQFTGGVPAELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGP 256

Query: 244 IPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLE 303
           IPPS G+L NL Y+FLYQNKL+G IP SI  L++L+S D SDN LSGEIPE + Q+Q LE
Sbjct: 257 IPPSLGDLKNLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPELLAQMQTLE 316

Query: 304 ILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGK 363
           ILHLFSNN TG IP  + S+P+LQVLQLWSN+FSG IP+NLGK NNLTV+DLSTN LTGK
Sbjct: 317 ILHLFSNNLTGTIPVGVTSLPRLQVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLTGK 376

Query: 364 IPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVY 423
           +P+TLCDSG L KLILFSNSL+G+IP SL  C SL RVRLQ N  SG+L   FT+L LV 
Sbjct: 377 LPDTLCDSGHLTKLILFSNSLDGQIPPSLGACSSLERVRLQKNAFSGDLPRGFTKLQLVN 436

Query: 424 FLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTI 483
           FLD+S N+L G I    W+M  L+ML+L+ NNFSG+LPD   S +L+ LDLS NR S  +
Sbjct: 437 FLDLSNNNLQGNI--NTWDMPQLEMLDLSRNNFSGELPDLSRSKRLKKLDLSRNRISEMV 494

Query: 484 PRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQ 543
           P       ELM + +S N++ G IP ELSSCK LV+LDLS+N L+G IP S SE PVL  
Sbjct: 495 PLRLMAFPELMDMDLSENEITGVIPSELSSCKNLVNLDLSHNNLTGEIPLSFSEFPVLSD 554

Query: 544 LDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGN-DLCGGD 602
           LDLS N+LSG+IP+ LG + SLVQVNISHN  HGSLP TGAFLAINATAVAGN DLC  +
Sbjct: 555 LDLSCNRLSGEIPKNLGNIESLVQVNISHNLLHGSLPPTGAFLAINATAVAGNIDLCSSN 614

Query: 603 STSGLPPCKGNKKNQT--WWLVVACFLAVLIMLALAAFAITVI--RGKKILELKRVENED 658
           S SGL PCK  +K  T  WW ++   +   + + ++ F I ++  + + +LE+K+VE ED
Sbjct: 615 SASGLRPCKVVRKRSTKSWWFIITSTVVAFLAVLVSGFFIALVFQKTRNVLEVKKVEQED 674

Query: 659 GI-WEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKII 717
           G  WE QFF+S+  KS T++ I+SS  E+N+    K G+             +FVVK++ 
Sbjct: 675 GTKWETQFFDSRFMKSFTVNAILSSLNEQNVLV-DKTGI-------------KFVVKEVK 720

Query: 718 DVNTITTSSFWPD-VSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS 776
             +++      P+ +S   KL  H NI+++   CRSEK AYL++E +EGK LS++L  LS
Sbjct: 721 KYDSL------PEMISDMRKLSEHKNILKIVATCRSEKEAYLIHEDVEGKRLSQILNGLS 774

Query: 777 WERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK 836
           WERRRK+  GI +ALRFLH  CSP+VVAG++SP  +++D KD+P        L       
Sbjct: 775 WERRRKIMKGIVEALRFLHCRCSPAVVAGNLSPENIVIDVKDQPR-------LCLGLPGL 827

Query: 837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGK-SPADADFG--VHESIVEWARY 893
               SAY+APET+E K++T K DIYGFG++L++LLTGK S  D D    V+ S+V WARY
Sbjct: 828 LCMDSAYMAPETRERKEMTSKSDIYGFGILLLNLLTGKNSSGDEDIASEVNGSLVNWARY 887

Query: 894 CYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE 948
            YS+CH+DTW+D  I   +S  + EIV +MNLAL+CTA DP  RPC  +V + LE
Sbjct: 888 SYSNCHIDTWIDSSI--DMSVHKREIVHVMNLALNCTAIDPQERPCTKNVLQALE 940

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225191|ref|NP_180150.1| Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana] gi|75100616|sp|O82318.1|Y2579_ARATH RecName: Full=Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790; Flags: Precursor gi|3643604|gb|AAC42251.1| putative receptor-like protein kinase [Arabidopsis thaliana] gi|224589523|gb|ACN59295.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gi|330252659|gb|AEC07753.1| Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana]

 Score =  998 bits (2581), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/955 (55%), Positives = 679/955 (71%), Gaps = 45/955 (4%)

Query: 8   FMFLFLSFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVT--FCKWNGISCQNSTHVNA 65
             FLFL+F   H  ELELLLSFKS++ DP   LS+W  S T   C W+G+ C N + V +
Sbjct: 17  LFFLFLNFSCLHANELELLLSFKSSIQDPLKHLSSWSYSSTNDVCLWSGVVCNNISRVVS 76

Query: 66  IELSAKNISGKI-SSSIFHLPHVESINLSSNQLSGEIPSDIFSSSN-SLRFLNLSNNNFT 123
           ++LS KN+SG+I +++ F LP +++INLS+N LSG IP DIF++S+ SLR+LNLSNNNF+
Sbjct: 77  LDLSGKNMSGQILTAATFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFS 136

Query: 124 GPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQ 183
           G +P G L  L  LDLSNNM +G+I  +IG FS L+VLDLGGNVL G +P  + N++ L+
Sbjct: 137 GSIPRGFLPNLYTLDLSNNMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVPGYLGNLSRLE 196

Query: 184 IFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQ 243
             TLASNQL G +P E+G+++NLKWIYLGYNNLSGEIP +IG L+SLNHLDLVYNNL+G 
Sbjct: 197 FLTLASNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGP 256

Query: 244 IPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLE 303
           IPPS G+L  L Y+FLYQNKL+G IP SI  L++L+S D SDN LSGEIPE V Q+Q+LE
Sbjct: 257 IPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPELVAQMQSLE 316

Query: 304 ILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGK 363
           ILHLFSNN TGKIP  + S+P+L+VLQLWSN+FSG IP+NLGK NNLTV+DLSTN LTGK
Sbjct: 317 ILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLTGK 376

Query: 364 IPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVY 423
           +P+TLCDSG L KLILFSNSL+ +IP SL  C+SL RVRLQNN  SG+L   FT+L LV 
Sbjct: 377 LPDTLCDSGHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNGFSGKLPRGFTKLQLVN 436

Query: 424 FLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTI 483
           FLD+S N+L G I    W+M  L+ML+L+ N F G+LPD   S +L+ LDLS N+ SG +
Sbjct: 437 FLDLSNNNLQGNI--NTWDMPQLEMLDLSVNKFFGELPDFSRSKRLKKLDLSRNKISGVV 494

Query: 484 PRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQ 543
           P+      E+M L +S N++ G IP ELSSCK LV+LDLS+N  +G IP+S +E  VL  
Sbjct: 495 PQGLMTFPEIMDLDLSENEITGVIPRELSSCKNLVNLDLSHNNFTGEIPSSFAEFQVLSD 554

Query: 544 LDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGN-DLCGGD 602
           LDLS NQLSG+IP+ LG + SLVQVNISHN  HGSLP TGAFLAINATAV GN DLC  +
Sbjct: 555 LDLSCNQLSGEIPKNLGNIESLVQVNISHNLLHGSLPFTGAFLAINATAVEGNIDLCSEN 614

Query: 603 STSGLPPCKGNKKNQT--WWLVVACFLAVLIMLALAAFAITVI--RGKKILELKRVENED 658
           S SGL PCK  +K  T  WWL++    A  + + ++ F I ++  R   +LE+K+VE ED
Sbjct: 615 SASGLRPCKVVRKRSTKSWWLIITSTFAAFLAVLVSGFFIVLVFQRTHNVLEVKKVEQED 674

Query: 659 GI-WEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKII 717
           G  WE QFF+SK  KS T++ I+SS  ++N              V    N + FVVK++ 
Sbjct: 675 GTKWETQFFDSKFMKSFTVNTILSSLKDQN--------------VLVDKNGVHFVVKEVK 720

Query: 718 DVNTITTSSFWPD-VSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS 776
             +++      P+ +S   KL  H NI+++   CRSE  AYL++E +EGK LS+VL  LS
Sbjct: 721 KYDSL------PEMISDMRKLSDHKNILKIVATCRSETVAYLIHEDVEGKRLSQVLSGLS 774

Query: 777 WERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK 836
           WERRRK+  GI +ALRFLH  CSP+VVAG++SP  +++D  DEP L L +PGL       
Sbjct: 775 WERRRKIMKGIVEALRFLHCRCSPAVVAGNLSPENIVIDVTDEPRLCLGLPGLLCM---- 830

Query: 837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGK---SPADADFGVHESIVEWARY 893
               +AY+APET+E K++T K DIYGFG++L+ LLTGK   S  D + GV+ S+V+WARY
Sbjct: 831 ---DAAYMAPETREHKEMTSKSDIYGFGILLLHLLTGKCSSSNEDIESGVNGSLVKWARY 887

Query: 894 CYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE 948
            YS+CH+DTW+D  I   V   Q EIV +MNLAL CTA DP  RPC ++V + LE
Sbjct: 888 SYSNCHIDTWIDSSIDTSVH--QREIVHVMNLALKCTAIDPQERPCTNNVLQALE 940

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	966
TAIR|locus:2043540	960	AT2G25790 [Arabidopsis thalian	0.853	0.858	0.537	1.7e-231
TAIR|locus:2097310	1002	BAM2 "BARELY ANY MERISTEM 2" [	0.958	0.924	0.355	9.3e-146
TAIR|locus:2025545	1029	AT1G08590 [Arabidopsis thalian	0.619	0.581	0.401	1.3e-143
TAIR|locus:2204350	980	CLV1 "AT1G75820" [Arabidopsis	0.957	0.943	0.339	1.3e-141
TAIR|locus:2169965	1003	BAM1 "BARELY ANY MERISTEM 1" [	0.945	0.910	0.342	4.4e-139
TAIR|locus:2169975	993	HSL2 "HAESA-like 2" [Arabidops	0.906	0.882	0.344	5.4e-130
UNIPROTKB|Q5Z9N5	994	P0481E08.42 "Os06g0717200 prot	0.931	0.905	0.329	2.6e-125
TAIR|locus:2120412	992	BAM3 "BARELY ANY MERISTEM 3" [	0.815	0.794	0.353	8.9e-125
TAIR|locus:2139885	1013	AT4G28650 [Arabidopsis thalian	0.762	0.727	0.365	1.7e-123
TAIR|locus:2161825	1090	AT5G56040 [Arabidopsis thalian	0.769	0.681	0.332	8.2e-123

TAIR|locus:2043540 AT2G25790 [Arabidopsis thaliana (taxid:3702)]

 Score = 2233 (791.1 bits), Expect = 1.7e-231, P = 1.7e-231
 Identities = 462/859 (53%), Positives = 591/859 (68%)

Query:     7 LFMFLFLSFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVT--FCKWNGISCQNSTHVN 64
             LF FLFL+F   H  ELELLLSFKS++ DP   LS+W  S T   C W+G+ C N + V 
Sbjct:    17 LF-FLFLNFSCLHANELELLLSFKSSIQDPLKHLSSWSYSSTNDVCLWSGVVCNNISRVV 75

Query:    65 AIELSAKNISGKI-SSSIFHLPHVESINLSSNQLSGEIPSDIXXXXX-XXXXXXXXXXXX 122
             +++LS KN+SG+I +++ F LP +++INLS+N LSG IP DI                  
Sbjct:    76 SLDLSGKNMSGQILTAATFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNF 135

Query:   123 TGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSL 182
             +G +P G L  L  LDLSNNM +G+I  +IG FS L+VLDLGGNVL G +P  + N++ L
Sbjct:   136 SGSIPRGFLPNLYTLDLSNNMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVPGYLGNLSRL 195

Query:   183 QIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG 242
             +  TLASNQL G +P E+G+++NLKWIYLGYNNLSGEIP +IG L+SLNHLDLVYNNL+G
Sbjct:   196 EFLTLASNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSG 255

Query:   243 QIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNL 302
              IPPS G+L  L Y+FLYQNKL+G IP SI  L++L+S D SDN LSGEIPE V Q+Q+L
Sbjct:   256 PIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPELVAQMQSL 315

Query:   303 EILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTG 362
             EILHLFSNN TGKIP  + S+P+L+VLQLWSN+FSG IP+NLGK NNLTV+DLSTN LTG
Sbjct:   316 EILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLTG 375

Query:   363 KIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLV 422
             K+P+TLCDSG L KLILFSNSL+ +IP SL  C+SL RVRLQNN  SG+L   FT+L LV
Sbjct:   376 KLPDTLCDSGHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNGFSGKLPRGFTKLQLV 435

Query:   423 YFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGT 482
              FLD+S N+L G I    W+M  L+ML+L+ N F G+LPD   S +L+ LDLS N+ SG 
Sbjct:   436 NFLDLSNNNLQGNINT--WDMPQLEMLDLSVNKFFGELPDFSRSKRLKKLDLSRNKISGV 493

Query:   483 IPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLG 542
             +P+      E+M L +S N++ G IP ELSSCK LV+LDLS+N  +G IP+S +E  VL 
Sbjct:   494 VPQGLMTFPEIMDLDLSENEITGVIPRELSSCKNLVNLDLSHNNFTGEIPSSFAEFQVLS 553

Query:   543 QLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGN-DLCGG 601
              LDLS NQLSG+IP+ LG + SLVQVNISHN  HGSLP TGAFLAINATAV GN DLC  
Sbjct:   554 DLDLSCNQLSGEIPKNLGNIESLVQVNISHNLLHGSLPFTGAFLAINATAVEGNIDLCSE 613

Query:   602 DSTSGLPPCKGNKKNQT--WWLVVACFLAVLIMLALAAFAITVI--RGKKILELKRVENE 657
             +S SGL PCK  +K  T  WWL++    A  + + ++ F I ++  R   +LE+K+VE E
Sbjct:   614 NSASGLRPCKVVRKRSTKSWWLIITSTFAAFLAVLVSGFFIVLVFQRTHNVLEVKKVEQE 673

Query:   658 DGI-WEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKI 716
             DG  WE QFF+SK  KS T++ I+SS  ++N+    K GV              FVVK++
Sbjct:   674 DGTKWETQFFDSKFMKSFTVNTILSSLKDQNVLV-DKNGV-------------HFVVKEV 719

Query:   717 IDVNTITTSSFWPD-VSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL 775
                +++      P+ +S   KL  H NI+++   CRSE  AYL++E +EGK LS+VL  L
Sbjct:   720 KKYDSL------PEMISDMRKLSDHKNILKIVATCRSETVAYLIHEDVEGKRLSQVLSGL 773

Query:   776 SWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS 835
             SWERRRK+  GI +ALRFLH  CSP+VVAG++SP  +++D  DEP L L +PGL  C D+
Sbjct:   774 SWERRRKIMKGIVEALRFLHCRCSPAVVAGNLSPENIVIDVTDEPRLCLGLPGLL-CMDA 832

Query:   836 KSINSSAYVAPETKESKDI 854
               +        E     DI
Sbjct:   833 AYMAPETREHKEMTSKSDI 851

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2097310 BAM2 "BARELY ANY MERISTEM 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
 Identities = 344/968 (35%), Positives = 510/968 (52%)

Query:     6 ILFMFLFLSFCTCHG-AELELLLSFKS--TVNDPYNFLSNWDSSVTFCKWNGISCQNST- 61
             +L + +  SF       EL  LLS KS  T+++    L++W+ S TFC W G++C  S  
Sbjct:    10 LLLLHISHSFTVAKPITELHALLSLKSSFTIDEHSPLLTSWNLSTTFCSWTGVTCDVSLR 69

Query:    62 HVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIXXXXXXXXXXXXXXXX 121
             HV +++LS  N+SG +SS + HLP +++++L++NQ+SG IP  I                
Sbjct:    70 HVTSLDLSGLNLSGTLSSDVAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVF 129

Query:   122 XTG-PVPIGS-LSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNI 179
                 P  + S L  L +LDL NN L+G +P  + + + L+ L LGGN   G+IP +    
Sbjct:   130 NGSFPDELSSGLVNLRVLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTW 189

Query:   180 TSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNN-LSGEIPKEIGDLTSLNHLDLVYN 238
               L+   ++ N+L G IP EIG L  L+ +Y+GY N     +P EIG+L+ L   D    
Sbjct:   190 PVLEYLAVSGNELTGKIPPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANC 249

Query:   239 NLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQ 298
              LTG+IPP  G L  L  LFL  N  TG+I + +  + SL S DLS+N  +GEIP    Q
Sbjct:   250 GLTGEIPPEIGKLQKLDTLFLQVNAFTGTITQELGLISSLKSMDLSNNMFTGEIPTSFSQ 309

Query:   299 LQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTN 358
             L+NL +L+LF N   G IP  +  MP+L+VLQLW N F+G IP  LG+   L ++DLS+N
Sbjct:   310 LKNLTLLNLFRNKLYGAIPEFIGEMPELEVLQLWENNFTGSIPQKLGENGRLVILDLSSN 369

Query:   359 FLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTR 418
              LTG +P  +C    L  LI   N L G IP+SL  C+SL R+R+  N L+G +  E   
Sbjct:   370 KLTGTLPPNMCSGNRLMTLITLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKELFG 429

Query:   419 LPLVYFLDISGNDLSGRIGEQKWEMTS-LQMLNLAGNNFSGKLPDSFGS-DQLENLDLSE 476
             LP +  +++  N L+G +      ++  L  ++L+ N  SG LP + G+   ++ L L  
Sbjct:   430 LPKLSQVELQDNYLTGELPISGGGVSGDLGQISLSNNQLSGSLPAAIGNLSGVQKLLLDG 489

Query:   477 NRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLS 536
             N+FSG+IP   GRL +L +L  S N   G I  E+S CK L  +DLS N+LSG IP  L+
Sbjct:   490 NKFSGSIPPEIGRLQQLSKLDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGDIPNELT 549

Query:   537 EMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGN 596
              M +L  L+LS N L G IP T+  + SL  V+ S+N+  G +PSTG F   N T+  GN
Sbjct:   550 GMKILNYLNLSRNHLVGSIPVTIASMQSLTSVDFSYNNLSGLVPSTGQFSYFNYTSFVGN 609

Query:   597 D-LCGGDSTSGLPPC-KGNKKNQTWWLVVACFLAVLIMLALAAFAITVIRGKKILELKRV 654
               LCG      L PC KG  ++    L     L +++ L   +    ++   K   L+  
Sbjct:   610 SHLCG----PYLGPCGKGTHQSHVKPLSATTKLLLVLGLLFCSMVFAIVAIIKARSLRNA 665

Query:   655 ENEDGIWEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVK 714
              +E   W +  F        T D+++ S  E+N+  +G  G+   YK      D+   VK
Sbjct:   666 -SEAKAWRLTAFQRL---DFTCDDVLDSLKEDNIIGKGGAGIV--YKGTMPKGDL-VAVK 718

Query:   715 KIIDVNTITTSS--FWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
             ++  ++  ++    F  ++   G+ I H +IVRL G C + +   LVYEY+    L EVL
Sbjct:   719 RLATMSHGSSHDHGFNAEIQTLGR-IRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVL 777

Query:   773 R-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR---- 823
                   +L W  R K+A+  AK L +LH  CSP +V  DV    +++D   E H+     
Sbjct:   778 HGKKGGHLHWNTRYKIALEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGL 837

Query:   824 ---LSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
                L   G + C  S    S  Y+APE   +  + EK D+Y FG++L++L+TGK P   +
Sbjct:   838 AKFLQDSGTSECM-SAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGKKPV-GE 895

Query:   881 FGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ-NEIVEIMNLALHCTAGDPTARPC 939
             FG    IV+W R   +D + D  V   I   +SS+  +E+  +  +AL C       RP 
Sbjct:   896 FGDGVDIVQWVR-SMTDSNKDC-VLKVIDLRLSSVPVHEVTHVFYVALLCVEEQAVERPT 953

Query:   940 ASDVTKTL 947
               +V + L
Sbjct:   954 MREVVQIL 961

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2025545 AT1G08590 [Arabidopsis thaliana (taxid:3702)]

 Score = 1151 (410.2 bits), Expect = 1.3e-143, Sum P(2) = 1.3e-143
 Identities = 246/612 (40%), Positives = 361/612 (58%)

Query:     9 MFLFLSFCTCHGAELELLLSFKSTVNDPYNFLSNW---DSSVTF-----CKWNGISCQNS 60
             +F F+S  T   +E E+LL+FKS + DP N L +W   +++ TF     C W G+ C  +
Sbjct:    17 LFPFVSSETFQNSEQEILLAFKSDLFDPSNNLQDWKRPENATTFSELVHCHWTGVHCDAN 76

Query:    61 THVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIXXXXXXXXXXXXXXX 120
              +V  + LS  N+SG +S  I   P +++++LS+N     +P  +               
Sbjct:    77 GYVAKLLLSNMNLSGNVSDQIQSFPSLQALDLSNNAFESSLPKSLSNLTSLKVIDVSVNS 136

Query:   121 XX-TGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNI 179
                T P  +G  + L  ++ S+N  SG +PE++G+ + L+VLD  G    G +P S  N+
Sbjct:   137 FFGTFPYGLGMATGLTHVNASSNNFSGFLPEDLGNATTLEVLDFRGGYFEGSVPSSFKNL 196

Query:   180 TSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNN 239
              +L+   L+ N   G +P+ IG+L +L+ I LGYN   GEIP+E G LT L +LDL   N
Sbjct:   197 KNLKFLGLSGNNFGGKVPKVIGELSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGN 256

Query:   240 LTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQL 299
             LTGQIP S G L  L  ++LYQN+LTG +P+ + G+ SLV  DLSDN ++GEIP EV +L
Sbjct:   257 LTGQIPSSLGQLKQLTTVYLYQNRLTGKLPRELGGMTSLVFLDLSDNQITGEIPMEVGEL 316

Query:   300 QNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNF 359
             +NL++L+L  N  TG IPS +A +P L+VL+LW N   G +P +LGK + L  +D+S+N 
Sbjct:   317 KNLQLLNLMRNQLTGIIPSKIAELPNLEVLELWQNSLMGSLPVHLGKNSPLKWLDVSSNK 376

Query:   360 LTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRL 419
             L+G IP  LC S +L KLILF+NS  G+IP  + +C +L RVR+Q N +SG + +    L
Sbjct:   377 LSGDIPSGLCYSRNLTKLILFNNSFSGQIPEEIFSCPTLVRVRIQKNHISGSIPAGSGDL 436

Query:   420 PLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRF 479
             P++  L+++ N+L+G+I +     TSL  ++++ N+ S      F S  L+    S N F
Sbjct:   437 PMLQHLELAKNNLTGKIPDDIALSTSLSFIDISFNHLSSLSSSIFSSPNLQTFIASHNNF 496

Query:   480 SGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMP 539
             +G IP        L  L +S N   G IPE ++S +KLVSL+L +NQL G IP +L+ M 
Sbjct:   497 AGKIPNQIQDRPSLSVLDLSFNHFSGGIPERIASFEKLVSLNLKSNQLVGEIPKALAGMH 556

Query:   540 VLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGND-L 598
             +L  LDLS N L+G IP  LG   +L  +N+S N   G +PS   F AI+   + GN+ L
Sbjct:   557 MLAVLDLSNNSLTGNIPADLGASPTLEMLNVSFNKLDGPIPSNMLFAAIDPKDLVGNNGL 616

Query:   599 CGGDSTSGLPPC 610
             CGG     LPPC
Sbjct:   617 CGGV----LPPC 624

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2204350 CLV1 "AT1G75820" [Arabidopsis thaliana (taxid:3702)]

 Score = 1385 (492.6 bits), Expect = 1.3e-141, P = 1.3e-141
 Identities = 331/975 (33%), Positives = 515/975 (52%)

Query:     6 ILFMFLFLSFCTCHG-AELELLLSFKSTVNDPYNF-LSNW---DSSVTFCKWNGISCQNS 60
             +LF+ L+L F  C    ++E+LL+ KS++  P    L +W    S    C ++G+SC + 
Sbjct:    10 LLFLHLYLFFSPCFAYTDMEVLLNLKSSMIGPKGHGLHDWIHSSSPDAHCSFSGVSCDDD 69

Query:    61 THVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIXXXXXXXXXXXXXXX 120
               V ++ +S   + G IS  I  L H+ ++ L++N  +GE+P ++               
Sbjct:    70 ARVISLNVSFTPLFGTISPEIGMLTHLVNLTLAANNFTGELPLEMKSLTSLKVLNISNNG 129

Query:   121 XXTGPVP---IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSIS 177
               TG  P   + ++  LE+LD  NN  +GK+P E+     LK L  GGN   GEIP S  
Sbjct:   130 NLTGTFPGEILKAMVDLEVLDTYNNNFNGKLPPEMSELKKLKYLSFGGNFFSGEIPESYG 189

Query:   178 NITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGY-NNLSGEIPKEIGDLTSLNHLDLV 236
             +I SL+   L    L G  P  + +L+NL+ +Y+GY N+ +G +P E G LT L  LD+ 
Sbjct:   190 DIQSLEYLGLNGAGLSGKSPAFLSRLKNLREMYIGYYNSYTGGVPPEFGGLTKLEILDMA 249

Query:   237 YNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEV 296
                LTG+IP S  NL +L  LFL+ N LTG IP  + GL SL S DLS N L+GEIP+  
Sbjct:   250 SCTLTGEIPTSLSNLKHLHTLFLHINNLTGHIPPELSGLVSLKSLDLSINQLTGEIPQSF 309

Query:   297 IQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLS 356
             I L N+ +++LF NN  G+IP ++  +PKL+V ++W N F+ ++P+NLG+  NL  +D+S
Sbjct:   310 INLGNITLINLFRNNLYGQIPEAIGELPKLEVFEVWENNFTLQLPANLGRNGNLIKLDVS 369

Query:   357 TNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEF 416
              N LTG IP+ LC    L  LIL +N   G IP  L  CKSL ++R+  N L+G + +  
Sbjct:   370 DNHLTGLIPKDLCRGEKLEMLILSNNFFFGPIPEELGKCKSLTKIRIVKNLLNGTVPAGL 429

Query:   417 TRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLS 475
               LPLV  ++++ N  SG +         L  + L+ N FSG++P + G+   L+ L L 
Sbjct:   430 FNLPLVTIIELTDNFFSGEL-PVTMSGDVLDQIYLSNNWFSGEIPPAIGNFPNLQTLFLD 488

Query:   476 ENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASL 535
              NRF G IPR    L  L ++  S N + G IP+ +S C  L+S+DLS N+++G IP  +
Sbjct:   489 RNRFRGNIPREIFELKHLSRINTSANNITGGIPDSISRCSTLISVDLSRNRINGEIPKGI 548

Query:   536 SEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAG 595
             + +  LG L++S NQL+G IP  +G + SL  +++S N   G +P  G FL  N T+ AG
Sbjct:   549 NNVKNLGTLNISGNQLTGSIPTGIGNMTSLTTLDLSFNDLSGRVPLGGQFLVFNETSFAG 608

Query:   596 ND-LCGGDSTSGLPPCKGNKKNQTWWLVVACFLAVLIMLALAAFAIT--VIRGKKILELK 652
             N  LC     S  P   G   +       A F    I++ + A AIT  ++    I ++ 
Sbjct:   609 NTYLCLPHRVS-CPTRPGQTSDHNH---TALFSPSRIVITVIA-AITGLILISVAIRQMN 663

Query:   653 RVENEDGI-WEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQF 711
             + +N+  + W++  F     KS   ++++    EEN+  +G  G+   Y+  S+ N++  
Sbjct:   664 KKKNQKSLAWKLTAFQKLDFKS---EDVLECLKEENIIGKGGAGIV--YR-GSMPNNVDV 717

Query:   712 VVKKIIDVNTITTS-SFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE 770
              +K+++   T  +   F  ++   G+ I H +IVRL G   ++    L+YEY+    L E
Sbjct:   718 AIKRLVGRGTGRSDHGFTAEIQTLGR-IRHRHIVRLLGYVANKDTNLLLYEYMPNGSLGE 776

Query:   771 VLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL--- 822
             +L      +L WE R +VA+  AK L +LH  CSP ++  DV    +++D   E H+   
Sbjct:   777 LLHGSKGGHLQWETRHRVAVEAAKGLCYLHHDCSPLILHRDVKSNNILLDSDFEAHVADF 836

Query:   823 ---RLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADA 879
                +  V G A    S    S  Y+APE   +  + EK D+Y FG++L++L+ GK P   
Sbjct:   837 GLAKFLVDGAASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGKKPV-G 895

Query:   880 DFGVHESIVEWARYCY------SDCHLDTW-VDPFIRGHVSSIQNEIVEIMNLALHCTAG 932
             +FG    IV W R         SD  +    VDP + G+  +    ++ +  +A+ C   
Sbjct:   896 EFGEGVDIVRWVRNTEEEITQPSDAAIVVAIVDPRLTGYPLT---SVIHVFKIAMMCVEE 952

Query:   933 DPTARPCASDVTKTL 947
             +  ARP   +V   L
Sbjct:   953 EAAARPTMREVVHML 967

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007172 "signal complex assembly" evidence=IDA

GO:0016021 "integral to membrane" evidence=TAS

GO:0030154 "cell differentiation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0004702 "receptor signaling protein serine/threonine kinase activity" evidence=ISS

GO:0009934 "regulation of meristem structural organization" evidence=IMP

GO:0016020 "membrane" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

TAIR|locus:2169965 BAM1 "BARELY ANY MERISTEM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1361 (484.2 bits), Expect = 4.4e-139, P = 4.4e-139
 Identities = 327/956 (34%), Positives = 506/956 (52%)

Query:    21 AELELLLSFKSTV----NDPYNFLSNWDSSVTFCKWNGISCQNST-HVNAIELSAKNISG 75
             +E   LLS K+++    +D  + LS+W  S +FC W G++C  S  HV +++LS  N+SG
Sbjct:    24 SEFRALLSLKTSLTGAGDDKNSPLSSWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSG 83

Query:    76 KISSSIFHLPHVESINLSSNQLSGEIPSDIXXXXXXXXXXXXXXXXXTG-PVPIGS-LSR 133
              +S  + HL  +++++L+ N +SG IP +I                    P  I S L  
Sbjct:    84 TLSPDVSHLRLLQNLSLAENLISGPIPPEISSLSGLRHLNLSNNVFNGSFPDEISSGLVN 143

Query:   134 LEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLI 193
             L +LD+ NN L+G +P  + + + L+ L LGGN   G+IP S  +   ++   ++ N+L+
Sbjct:   144 LRVLDVYNNNLTGDLPVSVTNLTQLRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELV 203

Query:   194 GSIPREIGQLRNLKWIYLGYNNLSGE-IPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLS 252
             G IP EIG L  L+ +Y+GY N   + +P EIG+L+ L   D     LTG+IPP  G L 
Sbjct:   204 GKIPPEIGNLTTLRELYIGYYNAFEDGLPPEIGNLSELVRFDGANCGLTGEIPPEIGKLQ 263

Query:   253 NLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNF 312
              L  LFL  N  +G +   +  L SL S DLS+N  +GEIP    +L+NL +L+LF N  
Sbjct:   264 KLDTLFLQVNVFSGPLTWELGTLSSLKSMDLSNNMFTGEIPASFAELKNLTLLNLFRNKL 323

Query:   313 TGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSG 372
              G+IP  +  +P+L+VLQLW N F+G IP  LG+   L ++DLS+N LTG +P  +C   
Sbjct:   324 HGEIPEFIGDLPELEVLQLWENNFTGSIPQKLGENGKLNLVDLSSNKLTGTLPPNMCSGN 383

Query:   373 SLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDL 432
              L  LI   N L G IP+SL  C+SL R+R+  N L+G +      LP +  +++  N L
Sbjct:   384 KLETLITLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKGLFGLPKLTQVELQDNYL 443

Query:   433 SGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLS 491
             SG +        +L  ++L+ N  SG LP + G+   ++ L L  N+F G IP   G+L 
Sbjct:   444 SGELPVAGGVSVNLGQISLSNNQLSGPLPPAIGNFTGVQKLLLDGNKFQGPIPSEVGKLQ 503

Query:   492 ELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQL 551
             +L ++  S N   G I  E+S CK L  +DLS N+LSG IP  ++ M +L  L+LS N L
Sbjct:   504 QLSKIDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGEIPNEITAMKILNYLNLSRNHL 563

Query:   552 SGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGN-DLCG---GDSTSGL 607
              G IP ++  + SL  ++ S+N+  G +P TG F   N T+  GN DLCG   G    G+
Sbjct:   564 VGSIPGSISSMQSLTSLDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKDGV 623

Query:   608 PPCKGNKKNQTWWLVVACFLAVLIM-LALAAFAITVIRGKKILELKRVENEDGIWEVQFF 666
                KG  ++ +   + A    +L++ L + + A  V+   K   LK+  +E   W +  F
Sbjct:   624 --AKGGHQSHSKGPLSASMKLLLVLGLLVCSIAFAVVAIIKARSLKKA-SESRAWRLTAF 680

Query:   667 NSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSS 726
                     T D+++ S  E+N+  +G  G+   YK   + N     VK++  ++  ++  
Sbjct:   681 QRL---DFTCDDVLDSLKEDNIIGKGGAGIV--YK-GVMPNGDLVAVKRLAAMSRGSSHD 734

Query:   727 --FWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-----NLSWER 779
               F  ++   G+ I H +IVRL G C + +   LVYEY+    L EVL      +L W+ 
Sbjct:   735 HGFNAEIQTLGR-IRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDT 793

Query:   780 RRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR-------LSVPGLAYC 832
             R K+A+  AK L +LH  CSP +V  DV    +++D   E H+        L   G + C
Sbjct:   794 RYKIALEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSEC 853

Query:   833 TDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWAR 892
               S    S  Y+APE   +  + EK D+Y FG++L++L+TG+ P   +FG    IV+W R
Sbjct:   854 M-SAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPV-GEFGDGVDIVQWVR 911

Query:   893 YCYSDCHLDTWVDPFIRGHVSSIQ-NEIVEIMNLALHCTAGDPTARPCASDVTKTL 947
                +D + D+ V   +   +SSI  +E+  +  +A+ C       RP   +V + L
Sbjct:   912 KM-TDSNKDS-VLKVLDPRLSSIPIHEVTHVFYVAMLCVEEQAVERPTMREVVQIL 965

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2169975 HSL2 "HAESA-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1238 (440.9 bits), Expect = 5.4e-130, Sum P(2) = 5.4e-130
 Identities = 323/938 (34%), Positives = 493/938 (52%)

Query:     1 MANNSILFMFLFLSFCTCH-----GAELELLLSFKST-VNDPYNFLSNW---DSSVTFCK 51
             M  N+ LF FL L   +C        + E+L   K T + DP   L +W     + + C 
Sbjct:     1 MLTNTNLFFFLSLLLLSCFLQVSSNGDAEILSRVKKTRLFDPDGNLQDWVITGDNRSPCN 60

Query:    52 WNGISCQ----NSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIXX 107
             W GI+C     +S  V  I+LS  NISG        +  + +I LS N L+G I S    
Sbjct:    61 WTGITCHIRKGSSLAVTTIDLSGYNISGGFPYGFCRIRTLINITLSQNNLNGTIDSAPLS 120

Query:   108 XXXXXXXXXXXXXXXTGPVPIGS--LSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGG 165
                            +G +P  S    +L +L+L +N+ +G+IP+  G  + L+VL+L G
Sbjct:   121 LCSKLQNLILNQNNFSGKLPEFSPEFRKLRVLELESNLFTGEIPQSYGRLTALQVLNLNG 180

Query:   166 NVLVGEIPLSISNITSLQIFTLASNQLIGS-IPREIGQLRNLKWIYLGYNNLSGEIPKEI 224
             N L G +P  +  +T L    LA      S IP  +G L NL  + L ++NL GEIP  I
Sbjct:   181 NPLSGIVPAFLGYLTELTRLDLAYISFDPSPIPSTLGNLSNLTDLRLTHSNLVGEIPDSI 240

Query:   225 GDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLS 284
              +L  L +LDL  N+LTG+IP S G L ++  + LY N+L+G +P+SI  L  L +FD+S
Sbjct:   241 MNLVLLENLDLAMNSLTGEIPESIGRLESVYQIELYDNRLSGKLPESIGNLTELRNFDVS 300

Query:   285 DNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNL 344
              N L+GE+PE++  LQ +   +L  N FTG +P  +A  P L   ++++N F+G +P NL
Sbjct:   301 QNNLTGELPEKIAALQLISF-NLNDNFFTGGLPDVVALNPNLVEFKIFNNSFTGTLPRNL 359

Query:   345 GKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQ 404
             GK + ++  D+STN  +G++P  LC    L K+I FSN L G+IP S   C SL  +R+ 
Sbjct:   360 GKFSEISEFDVSTNRFSGELPPYLCYRRKLQKIITFSNQLSGEIPESYGDCHSLNYIRMA 419

Query:   405 NNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSF 464
             +N+LSGE+ + F  LPL      + N L G I     +   L  L ++ NNFSG +P   
Sbjct:   420 DNKLSGEVPARFWELPLTRLELANNNQLQGSIPPSISKARHLSQLEISANNFSGVIPVKL 479

Query:   465 GS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLS 523
                  L  +DLS N F G+IP    +L  L ++++  N L G+IP  +SSC +L  L+LS
Sbjct:   480 CDLRDLRVIDLSRNSFLGSIPSCINKLKNLERVEMQENMLDGEIPSSVSSCTELTELNLS 539

Query:   524 NNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTG 583
             NN+L G IP  L ++PVL  LDLS NQL+G+IP  L R+  L Q N+S N  +G +PS G
Sbjct:   540 NNRLRGGIPPELGDLPVLNYLDLSNNQLTGEIPAELLRL-KLNQFNVSDNKLYGKIPS-G 597

Query:   584 AFLAINATAVAGN-DLCGGDSTSGLPPCKGNKKNQTWWLVVACFLAVLIMLALAAFAITV 642
                 I   +  GN +LC   +   + PC+   K +T +++    +++L ++AL    + +
Sbjct:   598 FQQDIFRPSFLGNPNLCA-PNLDPIRPCRS--KRETRYILP---ISILCIVALTGALVWL 651

Query:   643 IRGKKILELKRVENEDGIWEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKV 702
                 K L  KR        ++  F  +VG   T ++I    TE+N+   G  G+   Y+V
Sbjct:   652 FIKTKPL-FKRKPKRTN--KITIFQ-RVG--FTEEDIYPQLTEDNIIGSGGSGLV--YRV 703

Query:   703 RSLANDMQFVVKKI---IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV 759
             + L +     VKK+       T + S F  +V   G+ + H NIV+L   C  E+  +LV
Sbjct:   704 K-LKSGQTLAVKKLWGETGQKTESESVFRSEVETLGR-VRHGNIVKLLMCCNGEEFRFLV 761

Query:   760 YEYIEGKELSEVLRN---------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPG 810
             YE++E   L +VL +         L W  R  +A+G A+ L +LH    P +V  DV   
Sbjct:   762 YEFMENGSLGDVLHSEKEHRAVSPLDWTTRFSIAVGAAQGLSYLHHDSVPPIVHRDVKSN 821

Query:   811 KVIVDGKDEPHLR---LSVP-------GLAYCTDSKSINSSAYVAPETKESKDITEKGDI 860
              +++D + +P +    L+ P       G++  + S    S  Y+APE   +  + EK D+
Sbjct:   822 NILLDHEMKPRVADFGLAKPLKREDNDGVSDVSMSCVAGSYGYIAPEYGYTSKVNEKSDV 881

Query:   861 YGFGLILIDLLTGKSPADADFGVHESIVEWAR---YCY 895
             Y FG++L++L+TGK P D+ FG ++ IV++A     CY
Sbjct:   882 YSFGVVLLELITGKRPNDSSFGENKDIVKFAMEAALCY 919

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|Q5Z9N5 P0481E08.42 "Os06g0717200 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
 Identities = 311/945 (32%), Positives = 474/945 (50%)

Query:    40 LSNWDSSVT---FCKWNGISCQNSTHVNAIELSAKNI-SGKISSSIFHLPHVESINLSSN 95
             L++WD + T    C ++G++C   + V AI L+A  + SG +   I  L  + ++ +++ 
Sbjct:    45 LADWDPAATSPAHCTFSGVTCDGRSRVVAINLTALPLHSGYLPPEIALLDSLANLTIAAC 104

Query:    96 QLSGEIPSDIXXXXXXXXXXXXXXXXXTG-PVPI--GSLS----RLEILDLSNNMLSGKI 148
              L G +P ++                    PVP   G  S     LE++D  NN LSG +
Sbjct:   105 CLPGHVPLELPTLPSLRHLNLSNNNLSGHFPVPDSGGGASPYFPSLELIDAYNNNLSGLL 164

Query:   149 PEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKW 208
             P    S + L+ L LGGN   G IP S  ++ +L+   L  N L G +P  + +L  L+ 
Sbjct:   165 PPFSASHARLRYLHLGGNYFTGAIPDSYGDLAALEYLGLNGNTLSGHVPVSLSRLTRLRE 224

Query:   209 IYLGY-NNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGS 267
             +Y+GY N   G +P E GDL +L  LD+   NLTG +PP  G L  L  LFL  N+L+G 
Sbjct:   225 MYIGYYNQYDGGVPPEFGDLGALLRLDMSSCNLTGPVPPELGRLQRLDTLFLQWNRLSGE 284

Query:   268 IPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQ 327
             IP  +  L SL S DLS N L+GEIP  +  L NL++L+LF N+  G IP  +A   +L+
Sbjct:   285 IPPQLGDLSSLASLDLSVNDLAGEIPPSLANLSNLKLLNLFRNHLRGSIPDFVAGFAQLE 344

Query:   328 VLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGK 387
             VLQLW N  +G IP+ LGK   L  +DL+TN LTG IP  LC    L  L+L  N L G 
Sbjct:   345 VLQLWDNNLTGNIPAGLGKNGRLKTLDLATNHLTGPIPADLCAGRRLEMLVLMENGLFGP 404

Query:   388 IPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQ 447
             IP+SL  CK+L RVRL  N L+G + +    LP    ++++ N L+G + +       + 
Sbjct:   405 IPDSLGDCKTLTRVRLAKNFLTGPVPAGLFNLPQANMVELTDNLLTGELPDVIGG-DKIG 463

Query:   448 MLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGD 506
             ML L  N   G++P + G+   L+ L L  N FSG +P   G L  L +L +S N L G 
Sbjct:   464 MLLLGNNGIGGRIPPAIGNLPALQTLSLESNNFSGALPPEIGNLKNLSRLNVSGNALTGA 523

Query:   507 IPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLV 566
             IP+EL  C  L ++DLS N  SG IP S++ + +L  L++S N+L+G++P  +  + SL 
Sbjct:   524 IPDELIRCASLAAVDLSRNGFSGEIPESITSLKILCTLNVSRNRLTGELPPEMSNMTSLT 583

Query:   567 QVNISHNHFHGSLPSTGAFLAINATAVAGND-LCGGDSTSGLPPCK----GNKKNQTWWL 621
              +++S+N   G +P  G FL  N ++  GN  LCGG      PP      G   +Q    
Sbjct:   584 TLDVSYNSLSGPVPMQGQFLVFNESSFVGNPGLCGGPVADACPPSMAGGGGGAGSQLRLR 643

Query:   622 VVACFLAVLIMLALAAFAITVIRGKKILELKR--VENEDGIWEVQFFNSKVGKSLTIDEI 679
               +  + V ++ A AA A+  +  +K     R       G W++  F  K+    + +++
Sbjct:   644 WDSKKMLVALVAAFAAVAVAFLGARKGCSAWRSAARRRSGAWKMTAFQ-KL--EFSAEDV 700

Query:   680 ISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTS-SFWPDVSQFGKLI 738
             +    E+N+  +G  G+   Y    +    +  +K+++          F  +V+  G+ I
Sbjct:   701 VECVKEDNIIGKGGAGIV--Y--HGVTRGAELAIKRLVGRGGGEHDRGFSAEVTTLGR-I 755

Query:   739 MHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-----NLSWERRRKVAIGIAKALRF 793
              H NIVRL G   + +   L+YEY+    L E+L      +L WE R +VA   A  L +
Sbjct:   756 RHRNIVRLLGFVSNRETNLLLYEYMPNGSLGEMLHGGKGGHLGWEARARVAAEAACGLCY 815

Query:   794 LHFHCSPSVVAGDVSPGKVIVDGKDEPH-----LRLSVPGLAYCTDSKSINSSAYVAPET 848
             LH  C+P ++  DV    +++D   E H     L   + G      S    S  Y+APE 
Sbjct:   816 LHHDCAPRIIHRDVKSNNILLDSAFEAHVADFGLAKFLGGATSECMSAIAGSYGYIAPEY 875

Query:   849 KESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI 908
               +  + EK D+Y FG++L++L+TG+ P    FG    IV W R   ++   ++     +
Sbjct:   876 AYTLRVDEKSDVYSFGVVLLELITGRRPVGG-FGDGVDIVHWVRKVTAELPDNSDTAAVL 934

Query:   909 RGHVSSIQNEIVEIM-NL---ALHCTAGDPTARPCASDVTKTLES 949
                   +  E V +M NL   A+ C     TARP   +V   L +
Sbjct:   935 AVADRRLTPEPVALMVNLYKVAMACVEEASTARPTMREVVHMLSN 979

GO:0010080 "regulation of floral meristem growth" evidence=IMP

GO:0048833 "specification of floral organ number" evidence=IMP

TAIR|locus:2120412 BAM3 "BARELY ANY MERISTEM 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
 Identities = 294/832 (35%), Positives = 443/832 (53%)

Query:    22 ELELLLSFKSTVNDPYN-FLSNWD--SSVTFCKWNGISCQN-STHVNAIELSAKNISGKI 77
             +  +L+S K +  D Y+  L +W+  +  + C W G+SC N +  +  ++LS  NISG I
Sbjct:    34 QANVLISLKQSF-DSYDPSLDSWNIPNFNSLCSWTGVSCDNLNQSITRLDLSNLNISGTI 92

Query:    78 SSSIFHL-PHVESINLSSNQLSGEIPSDIXXXXXXXXXXXXXXXXXTGPVP---IGSLSR 133
             S  I  L P +  +++SSN  SGE+P +I                  G +       +++
Sbjct:    93 SPEISRLSPSLVFLDISSNSFSGELPKEIYELSGLEVLNISSNVFE-GELETRGFSQMTQ 151

Query:   134 LEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLI 193
             L  LD  +N  +G +P  + + + L+ LDLGGN   GEIP S  +  SL+  +L+ N L 
Sbjct:   152 LVTLDAYDNSFNGSLPLSLTTLTRLEHLDLGGNYFDGEIPRSYGSFLSLKFLSLSGNDLR 211

Query:   194 GSIPREIGQLRNLKWIYLGY-NNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLS 252
             G IP E+  +  L  +YLGY N+  G IP + G L +L HLDL   +L G IP   GNL 
Sbjct:   212 GRIPNELANITTLVQLYLGYYNDYRGGIPADFGRLINLVHLDLANCSLKGSIPAELGNLK 271

Query:   253 NLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNF 312
             NL  LFL  N+LTGS+P+ +  + SL + DLS+N+L GEIP E+  LQ L++ +LF N  
Sbjct:   272 NLEVLFLQTNELTGSVPRELGNMTSLKTLDLSNNFLEGEIPLELSGLQKLQLFNLFFNRL 331

Query:   313 TGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSG 372
              G+IP  ++ +P LQ+L+LW N F+G+IPS LG   NL  IDLSTN LTG IPE+LC   
Sbjct:   332 HGEIPEFVSELPDLQILKLWHNNFTGKIPSKLGSNGNLIEIDLSTNKLTGLIPESLCFGR 391

Query:   373 SLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDL 432
              L  LILF+N L G +P  L  C+ L R RL  N L+ +L      LP +  L++  N L
Sbjct:   392 RLKILILFNNFLFGPLPEDLGQCEPLWRFRLGQNFLTSKLPKGLIYLPNLSLLELQNNFL 451

Query:   433 SGRIGEQKW---EMTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFG 488
             +G I E++    + +SL  +NL+ N  SG +P S  +   L+ L L  NR SG IP   G
Sbjct:   452 TGEIPEEEAGNAQFSSLTQINLSNNRLSGPIPGSIRNLRSLQILLLGANRLSGQIPGEIG 511

Query:   489 RLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSE 548
              L  L+++ +SRN   G  P E   C  L  LDLS+NQ+SG IP  +S++ +L  L++S 
Sbjct:   512 SLKSLLKIDMSRNNFSGKFPPEFGDCMSLTYLDLSHNQISGQIPVQISQIRILNYLNVSW 571

Query:   549 NQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGND-LCGGDSTSGL 607
             N  +  +P  LG + SL   + SHN+F GS+P++G F   N T+  GN  LCG  S    
Sbjct:   572 NSFNQSLPNELGYMKSLTSADFSHNNFSGSVPTSGQFSYFNNTSFLGNPFLCGFSSN--- 628

Query:   608 PPCKGNKKNQTWWLV----------VACFLAVLIMLALAAFAITVIRGKKILELKRVENE 657
              PC G++      L+          ++    +   L L  F +  +    +   +  +N 
Sbjct:   629 -PCNGSQNQSQSQLLNQNNARSRGEISAKFKLFFGLGLLGFFLVFVVLAVVKNRRMRKNN 687

Query:   658 DGIWEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKII 717
               +W++  F  K+G     + I+    E ++  +G +G+   YK   + N  +  VKK++
Sbjct:   688 PNLWKLIGFQ-KLG--FRSEHILECVKENHVIGKGGRGIV--YK-GVMPNGEEVAVKKLL 741

Query:   718 DVNTITT--SSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN- 774
              +   ++  +    ++   G+ I H NIVRL   C ++    LVYEY+    L EVL   
Sbjct:   742 TITKGSSHDNGLAAEIQTLGR-IRHRNIVRLLAFCSNKDVNLLVYEYMPNGSLGEVLHGK 800

Query:   775 ----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL 822
                 L WE R ++A+  AK L +LH  CSP ++  DV    +++  + E H+
Sbjct:   801 AGVFLKWETRLQIALEAAKGLCYLHHDCSPLIIHRDVKSNNILLGPEFEAHV 852

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048437 "floral organ development" evidence=IGI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048653 "anther development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2139885 AT4G28650 [Arabidopsis thaliana (taxid:3702)]

 Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
 Identities = 283/774 (36%), Positives = 423/774 (54%)

Query:    22 ELELLLSFKSTVNDPYNFLSNWDSSVT--FCKWNGISCQNSTHVNAIELSAKNISGKISS 79
             EL +LLS KST+ DP NFL +W  S T   C W G+ C ++ +V  ++L+  N++GKIS 
Sbjct:    30 ELSVLLSVKSTLVDPLNFLKDWKLSDTSDHCNWTGVRCNSNGNVEKLDLAGMNLTGKISD 89

Query:    80 SIFHLPHVESINLSSNQLSGEIPSDIXXXXXXXXXXXXXXXXXTGPVPIGSLSRLEILDL 139
             SI  L  + S N+S N     +P  I                 +G + + S   L ++ L
Sbjct:    90 SISQLSSLVSFNISCNGFESLLPKSIPPLKSIDISQNSF----SGSLFLFSNESLGLVHL 145

Query:   140 --SNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIP 197
               S N LSG + E++G+   L+VLDL GN   G +P S  N+  L+   L+ N L G +P
Sbjct:   146 NASGNNLSGNLTEDLGNLVSLEVLDLRGNFFQGSLPSSFKNLQKLRFLGLSGNNLTGELP 205

Query:   198 REIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYL 257
               +GQL +L+   LGYN   G IP E G++ SL +LDL    L+G+IP   G L +L  L
Sbjct:   206 SVLGQLPSLETAILGYNEFKGPIPPEFGNINSLKYLDLAIGKLSGEIPSELGKLKSLETL 265

Query:   258 FLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIP 317
              LY+N  TG+IP+ I  + +L   D SDN L+GEIP E+ +L+NL++L+L  N  +G IP
Sbjct:   266 LLYENNFTGTIPREIGSITTLKVLDFSDNALTGEIPMEITKLKNLQLLNLMRNKLSGSIP 325

Query:   318 SSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKL 377
              +++S+ +LQVL+LW+N  SGE+PS+LGK + L  +D+S+N  +G+IP TLC+ G+L KL
Sbjct:   326 PAISSLAQLQVLELWNNTLSGELPSDLGKNSPLQWLDVSSNSFSGEIPSTLCNKGNLTKL 385

Query:   378 ILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIG 437
             ILF+N+  G+IP +LSTC+SL RVR+QNN L+G +   F +L  +  L+++GN LSG I 
Sbjct:   386 ILFNNTFTGQIPATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQRLELAGNRLSGGIP 445

Query:   438 EQKWEMTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQL 496
                 +  SL  ++ + N     LP +  S   L+   +++N  SG +P  F     L  L
Sbjct:   446 GDISDSVSLSFIDFSRNQIRSSLPSTILSIHNLQAFLVADNFISGEVPDQFQDCPSLSNL 505

Query:   497 KISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIP 556
              +S N L G IP  ++SC+KLVSL+L NN L+G IP  ++ M  L  LDLS N L+G +P
Sbjct:   506 DLSSNTLTGTIPSSIASCEKLVSLNLRNNNLTGEIPRQITTMSALAVLDLSNNSLTGVLP 565

Query:   557 QTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGND-LCGGDSTSGLPPCKG--- 612
             +++G   +L  +N+S+N   G +P  G    IN   + GN  LCGG     LPPC     
Sbjct:   566 ESIGTSPALELLNVSYNKLTGPVPINGFLKTINPDDLRGNSGLCGGV----LPPCSKFQR 621

Query:   613 ---------NKKNQTWWLV-VACFLAVLIMLALAAFAITVIRGKKILELKRVENEDGIWE 662
                       K+    WL+ +A  LA+ I+  +                +     +  W 
Sbjct:   622 ATSSHSSLHGKRIVAGWLIGIASVLALGILTIVTRTLYKKWYSNGFCGDETASKGEWPWR 681

Query:   663 VQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKI----ID 718
             +  F+ ++G   T  +I++   E N+   G  G+   YK     +     VKK+     D
Sbjct:   682 LMAFH-RLG--FTASDILACIKESNMIGMGATGIV--YKAEMSRSSTVLAVKKLWRSAAD 736

Query:   719 VNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
             +   TT  F  +V+  GKL  H NIVRL G   ++K   +VYE++    L + +
Sbjct:   737 IEDGTTGDFVGEVNLLGKL-RHRNIVRLLGFLYNDKNMMIVYEFMLNGNLGDAI 789

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)]

 Score = 989 (353.2 bits), Expect = 8.2e-123, Sum P(2) = 8.2e-123
 Identities = 265/798 (33%), Positives = 405/798 (50%)

Query:    61 THVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIXXXXXXXXXXXXXXX 120
             + +  ++L+  ++SG+I   IF L  ++ ++L++N L G IPS++               
Sbjct:   120 SELEVLDLADNSLSGEIPVDIFKLKKLKILSLNTNNLEGVIPSELGNLVNLIELTLFDNK 179

Query:   121 XXTGPVP--IGSLSRLEILDLSNNM-LSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSIS 177
                G +P  IG L  LEI     N  L G++P EIG+   L  L L    L G +P SI 
Sbjct:   180 LA-GEIPRTIGELKNLEIFRAGGNKNLRGELPWEIGNCESLVTLGLAETSLSGRLPASIG 238

Query:   178 NITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVY 237
             N+  +Q   L ++ L G IP EIG    L+ +YL  N++SG IP  +G L  L  L L  
Sbjct:   239 NLKKVQTIALYTSLLSGPIPDEIGNCTELQNLYLYQNSISGSIPVSMGRLKKLQSLLLWQ 298

Query:   238 NNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVI 297
             NNL G+IP   G    L  + L +N LTG+IP+S   L +L    LS N LSG IPEE+ 
Sbjct:   299 NNLVGKIPTELGTCPELFLVDLSENLLTGNIPRSFGNLPNLQELQLSVNQLSGTIPEELA 358

Query:   298 QLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLST 357
                 L  L + +N  +G+IP  +  +  L +   W NQ +G IP +L +   L  IDLS 
Sbjct:   359 NCTKLTHLEIDNNQISGEIPPLIGKLTSLTMFFAWQNQLTGIIPESLSQCQELQAIDLSY 418

Query:   358 NFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFT 417
             N L+G IP  + +  +L KL+L SN L G IP  +  C +L R+RL  NRL+G + +E  
Sbjct:   419 NNLSGSIPNGIFEIRNLTKLLLLSNYLSGFIPPDIGNCTNLYRLRLNGNRLAGNIPAEIG 478

Query:   418 RLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSEN 477
              L  + F+DIS N L G I  +    TSL+ ++L  N  +G LP +     L+ +DLS+N
Sbjct:   479 NLKNLNFIDISENRLIGNIPPEISGCTSLEFVDLHSNGLTGGLPGTLPKS-LQFIDLSDN 537

Query:   478 RFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKL-------------------- 517
               +G++P   G L+EL +L +++N+  G+IP E+SSC+ L                    
Sbjct:   538 SLTGSLPTGIGSLTELTKLNLAKNRFSGEIPREISSCRSLQLLNLGDNGFTGEIPNELGR 597

Query:   518 -----VSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISH 572
                  +SL+LS N  +G IP+  S +  LG LD+S N+L+G +   L  + +LV +NIS 
Sbjct:   598 IPSLAISLNLSCNHFTGEIPSRFSSLTNLGTLDVSHNKLAGNL-NVLADLQNLVSLNISF 656

Query:   573 NHFHGSLPSTGAFLAINATAVAGNDLCGGDSTSGLPPCKGNKKNQTWWLVVACFL-AVLI 631
             N F G LP+T  F  +  + +  N    G   S  P      ++++   V    L A  +
Sbjct:   657 NEFSGELPNTLFFRKLPLSVLESNK---GLFISTRPENGIQTRHRSAVKVTMSILVAASV 713

Query:   632 MLALAAFAITVIRGKKILELKRVENEDGIWEVQFFNSKVGKSLTIDEIISSTTEENLTSR 691
             +L L A   T+++ ++I   K+ E +   WEV  +  K+    +ID+I+ + T  N+   
Sbjct:   714 VLVLMA-VYTLVKAQRITG-KQEELDS--WEVTLYQ-KL--DFSIDDIVKNLTSANVIGT 766

Query:   692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
             G  GV   Y+V ++ +     VKK+         +F  +++  G  I H NI+RL G C 
Sbjct:   767 GSSGVV--YRV-TIPSGETLAVKKMWSKEE--NRAFNSEINTLGS-IRHRNIIRLLGWCS 820

Query:   752 SEKAAYLVYEYIEGKELSEVLRNLS-------WERRRKVAIGIAKALRFLHFHCSPSVVA 804
             +     L Y+Y+    LS +L           WE R  V +G+A AL +LH  C P ++ 
Sbjct:   821 NRNLKLLFYDYLPNGSLSSLLHGAGKGSGGADWEARYDVVLGVAHALAYLHHDCLPPILH 880

Query:   805 GDVSPGKVIVDGKDEPHL 822
             GDV    V++  + E +L
Sbjct:   881 GDVKAMNVLLGSRFESYL 898

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048653 "anther development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82318	Y2579_ARATH	No assigned EC number	0.5539	0.9420	0.9479	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.11	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_VI1628 leucine-rich repeat receptor-like protein kinase (967 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	966
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.0
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-24
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	2e-19
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	4e-18
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-14
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-14
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	7e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-13
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	3e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-13
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	8e-13
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	1e-12
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-12
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-10
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	8e-10
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	1e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-09
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	3e-09
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	5e-09
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	5e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	7e-09
cd05077	262	cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) do	1e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-08
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	3e-08
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	3e-08
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	4e-08
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	6e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	1e-07
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	1e-07
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	2e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-07
cd05078	258	cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-07
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	4e-07
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	6e-07
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	6e-07
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	7e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-07
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	1e-06
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	1e-06
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	1e-06
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	2e-06
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	2e-06
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	2e-06
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-06
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	3e-06
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	3e-06
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	3e-06
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	5e-06
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	6e-06
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	6e-06
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	7e-06
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	9e-06
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	9e-06
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	9e-06
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	9e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-05
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	1e-05
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	1e-05
PRK13184	932	PRK13184, pknD, serine/threonine-protein kinase; R	1e-05
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	1e-05
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	1e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-05
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	2e-05
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	2e-05
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	2e-05
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-05
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	3e-05
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	3e-05
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	3e-05
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	4e-05
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	4e-05
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	4e-05
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	5e-05
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	6e-05
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	7e-05
cd05120	155	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphot	8e-05
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	9e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	1e-04
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	1e-04
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	1e-04
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	1e-04
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	2e-04
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	2e-04
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	2e-04
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	2e-04
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	2e-04
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	2e-04
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	2e-04
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	2e-04
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	2e-04
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	4e-04
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	4e-04
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	4e-04
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	5e-04
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	5e-04
cd05076	274	cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) do	5e-04
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	5e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-04
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	6e-04
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	6e-04
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	6e-04
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	7e-04
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	7e-04
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	7e-04
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	7e-04
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	7e-04
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	7e-04
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	7e-04
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	8e-04
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	8e-04
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	0.001
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	0.001
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	0.001
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	0.001
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	0.002
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	0.002
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	0.002
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	0.002
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	0.002
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	0.002
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	0.002
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	0.002
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	0.002
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	0.002
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.002
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	0.003
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	0.003
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	0.003
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	0.004
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 1545 bits (4002), Expect = 0.0
 Identities = 706/962 (73%), Positives = 812/962 (84%), Gaps = 10/962 (1%)

Query: 6   ILFMFLFLSFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNA 65
            +  FLFL+F   H  ELELLLSFKS++NDP  +LSNW+SS   C W GI+C NS+ V +
Sbjct: 14  FMLFFLFLNFSMLHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVS 73

Query: 66  IELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGP 125
           I+LS KNISGKISS+IF LP++++INLS+NQLSG IP DIF++S+SLR+LNLSNNNFTG 
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIF 185
           +P GS+  LE LDLSNNMLSG+IP +IGSFS LKVLDLGGNVLVG+IP S++N+TSL+  
Sbjct: 134 IPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193

Query: 186 TLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIP 245
           TLASNQL+G IPRE+GQ+++LKWIYLGYNNLSGEIP EIG LTSLNHLDLVYNNLTG IP
Sbjct: 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253

Query: 246 PSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEIL 305
            S GNL NL+YLFLYQNKL+G IP SI  L+ L+S DLSDN LSGEIPE VIQLQNLEIL
Sbjct: 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313

Query: 306 HLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIP 365
           HLFSNNFTGKIP +L S+P+LQVLQLWSN+FSGEIP NLGK NNLTV+DLSTN LTG+IP
Sbjct: 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373

Query: 366 ETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFL 425
           E LC SG+LFKLILFSNSLEG+IP SL  C+SLRRVRLQ+N  SGEL SEFT+LPLVYFL
Sbjct: 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433

Query: 426 DISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPR 485
           DIS N+L GRI  +KW+M SLQML+LA N F G LPDSFGS +LENLDLS N+FSG +PR
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR 493

Query: 486 SFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLD 545
             G LSELMQLK+S NKL G+IP+ELSSCKKLVSLDLS+NQLSG IPAS SEMPVL QLD
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553

Query: 546 LSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGN-DLCGGDST 604
           LS+NQLSG+IP+ LG V SLVQVNISHNH HGSLPSTGAFLAINA+AVAGN DLCGGD+T
Sbjct: 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTT 613

Query: 605 SGLPPCKGNKKNQTWWLVVACFLAVLIMLALAAFAITVIRGKKILELKRVENEDGIWEVQ 664
           SGLPPCK  +K  +WW  + C L   ++LAL AF    IRG+  LELKRVENEDG WE+Q
Sbjct: 614 SGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVENEDGTWELQ 673

Query: 665 FFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITT 724
           FF+SKV KS+TI++I+SS  EEN+ SRGKKG   SYK +S+ N MQFVVK+I DVN+I +
Sbjct: 674 FFDSKVSKSITINDILSSLKEENVISRGKKGA--SYKGKSIKNGMQFVVKEINDVNSIPS 731

Query: 725 SSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVA 784
           S    +++  GKL  HPNIV+L G+CRSEK AYL++EYIEGK LSEVLRNLSWERRRK+A
Sbjct: 732 S----EIADMGKL-QHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRNLSWERRRKIA 786

Query: 785 IGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYV 844
           IGIAKALRFLH  CSP+VV G++SP K+I+DGKDEPHLRLS+PGL  CTD+K   SSAYV
Sbjct: 787 IGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLRLSLPGL-LCTDTKCFISSAYV 845

Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWV 904
           APET+E+KDITEK DIYGFGLILI+LLTGKSPADA+FGVH SIVEWARYCYSDCHLD W+
Sbjct: 846 APETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWI 905

Query: 905 DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI-SSCVSGLKFS 963
           DP IRG VS  QNEIVE+MNLALHCTA DPTARPCA+DV KTLES  R  SSCV+GLKFS
Sbjct: 906 DPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESASRSSSSCVTGLKFS 965

Query: 964 SP 965
           S 
Sbjct: 966 SL 967

Length = 968

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  102 bits (257), Expect = 1e-24
 Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 15/190 (7%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           G+ G  + Y  R      +  +K I   ++ +         +  K + HPNIV+L+GV  
Sbjct: 2   GEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFE 61

Query: 752 SEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDV 807
            E   YLV EY EG  L ++L+     LS +   ++ + I + L +LH +    ++  D+
Sbjct: 62  DENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSN---GIIHRDL 118

Query: 808 SPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN------SSAYVAPET-KESKDITEKGDI 860
            P  +++D  D   ++L+  GL+    S          + AY+APE        +EK DI
Sbjct: 119 KPENILLD-SDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDI 177

Query: 861 YGFGLILIDL 870
           +  G+IL +L
Sbjct: 178 WSLGVILYEL 187

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 18/189 (9%)

Query: 700 YKVRSLANDMQFVVKKII--DVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAY 757
           YK +         VK +      +    +   ++ +  + + HPNIVRL      +   Y
Sbjct: 16  YKAKHKGTGKIVAVKILKKRSEKSKKDQTARREI-RILRRLSHPNIVRLIDAFEDKDHLY 74

Query: 758 LVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV 814
           LV EY EG +L + L     LS +  +K+A+ I + L +LH   S  ++  D+ P  +++
Sbjct: 75  LVMEYCEGGDLFDYLSRGGPLSEDEAKKIALQILRGLEYLH---SNGIIHRDLKPENILL 131

Query: 815 DGKDEPHLRLSVPGLAYCTDSKSIN------SSAYVAPET-KESKDITEKGDIYGFGLIL 867
           D      ++++  GLA      S +      +  Y+APE          K D++  G+IL
Sbjct: 132 DEN--GVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEVLLGGNGYGPKVDVWSLGVIL 189

Query: 868 IDLLTGKSP 876
            +LLTGK P
Sbjct: 190 YELLTGKPP 198

Length = 260

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 84.5 bits (210), Expect = 4e-18
 Identities = 65/255 (25%), Positives = 99/255 (38%), Gaps = 33/255 (12%)

Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVS---QFGKLIMHPNIVRLHGVCRSEKAA 756
           Y  R         +K I              +    +  K + HPNIVRL+ V   E   
Sbjct: 16  YLARDKKTGKLVAIKVI---KKKKIKKDRERILREIKILKKLKHPNIVRLYDVFEDEDKL 72

Query: 757 YLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
           YLV EY EG +L ++L+    LS +  R     I  AL +LH      +V  D+ P  ++
Sbjct: 73  YLVMEYCEGGDLFDLLKKRGRLSEDEARFYLRQILSALEYLHSKG---IVHRDLKPENIL 129

Query: 814 VDGKDEPHLRLSVPGLA-YCTDSKSINSSA----YVAPETKESKDITEKGDIYGFGLILI 868
           +D  ++ H++L+  GLA      + + +      Y+APE    K   +  DI+  G+IL 
Sbjct: 130 LD--EDGHVKLADFGLARQLDPGEKLTTFVGTPEYMAPEVLLGKGYGKAVDIWSLGVILY 187

Query: 869 DLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALH 928
           +LLTGK P   D      + +             W        +S       E  +L   
Sbjct: 188 ELLTGKPPFPGD-DQLLELFKKIGKPKPPFPPPEW-------DISP------EAKDLIRK 233

Query: 929 CTAGDPTARPCASDV 943
               DP  R  A + 
Sbjct: 234 LLVKDPEKRLTAEEA 248

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 82.9 bits (205), Expect = 3e-16
 Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 29/161 (18%)

Query: 22  ELELLLSFKSTVNDPYNFLSNWDSSV-TFCKWNGISCQ---NSTH--VNAIELSAKNISG 75
           E+  L + KS++  P  F  N D  V     W+G  CQ         ++ + L  + + G
Sbjct: 373 EVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRG 432

Query: 76  KISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLE 135
            I + I  L H++SINLS N + G I                       P  +GS++ LE
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNI-----------------------PPSLGSITSLE 469

Query: 136 ILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSI 176
           +LDLS N  +G IPE +G  + L++L+L GN L G +P ++
Sbjct: 470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 80.6 bits (199), Expect = 2e-15
 Identities = 37/89 (41%), Positives = 54/89 (60%)

Query: 137 LDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSI 196
           L L N  L G IP +I     L+ ++L GN + G IP S+ +ITSL++  L+ N   GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 197 PREIGQLRNLKWIYLGYNNLSGEIPKEIG 225
           P  +GQL +L+ + L  N+LSG +P  +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 79.5 bits (196), Expect = 4e-15
 Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 10/113 (8%)

Query: 503 LFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRV 562
           L G IP ++S  + L S++LS N + G+IP SL  +  L  LDLS N  +G IP++LG++
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 563 ASLVQVNISHNHFHGSLPST-GAFL----AINATAVAGNDLCGGDSTSGLPPC 610
            SL  +N++ N   G +P+  G  L    + N T  AG  LCG     GL  C
Sbjct: 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG--LCG---IPGLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 79.5 bits (196), Expect = 4e-15
 Identities = 45/99 (45%), Positives = 62/99 (62%), Gaps = 2/99 (2%)

Query: 190 NQ-LIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSF 248
           NQ L G IP +I +LR+L+ I L  N++ G IP  +G +TSL  LDL YN+  G IP S 
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 249 GNLSNLRYLFLYQNKLTGSIPKSILG-LKSLVSFDLSDN 286
           G L++LR L L  N L+G +P ++ G L    SF+ +DN
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.0 bits (187), Expect = 5e-14
 Identities = 44/111 (39%), Positives = 61/111 (54%), Gaps = 8/111 (7%)

Query: 207 KWIY--LGYNN--LSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQN 262
           KW    LG +N  L G IP +I  L  L  ++L  N++ G IPPS G++++L  L L  N
Sbjct: 417 KWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN 476

Query: 263 KLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFT 313
              GSIP+S+  L SL   +L+ N LSG +P  +       +LH  S NFT
Sbjct: 477 SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR----LLHRASFNFT 523

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 74.6 bits (183), Expect = 6e-14
 Identities = 100/365 (27%), Positives = 160/365 (43%), Gaps = 35/365 (9%)

Query: 57  CQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLN 116
             ++T    +  +  + + +  +  F   ++ES+ ++   L+         SSN+L  L 
Sbjct: 12  LSSNTLREVLSSNTYHTTPQSINLNFPDSNLESVAVNRLALN--------LSSNTLLLLP 63

Query: 117 LSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSI 176
            S +       + S S +  LD S N+L+               LDL  N L   I   +
Sbjct: 64  SSLSRLLSL-DLLSPSGISSLDGSENLLNLLPLPS---------LDLNLNRLRSNI-SEL 112

Query: 177 SNITSLQIFTLASNQLIGSIPREIG-QLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDL 235
             +T+L    L +N  I  IP  IG    NLK + L  N +   +P  + +L +L +LDL
Sbjct: 113 LELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170

Query: 236 VYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEE 295
            +N+L+  +P    NLSNL  L L  NK++  +P  I  L +L   DLS+N +  E+   
Sbjct: 171 SFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSS 227

Query: 296 VIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDL 355
           +  L+NL  L L +N     +P S+ ++  L+ L L +NQ      S+LG   NL  +DL
Sbjct: 228 LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQ--ISSISSLGSLTNLRELDL 284

Query: 356 STNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSE 415
           S N L+  +P           L+L    L   +    +    L  + L NN LS   +S 
Sbjct: 285 SGNSLSNALPLIA-------LLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSS 337

Query: 416 FTRLP 420
              L 
Sbjct: 338 PEALS 342

Length = 394

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 72.2 bits (178), Expect = 7e-14
 Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 45/226 (19%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLH 795
           HPNIVRL GVC   +  Y+V EY+ G +L + LR     L+ +   ++A+ IAK + +L 
Sbjct: 60  HPNIVRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKGMEYLE 119

Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--------YCTDSKSINSSAYVAPE 847
                + V  D++    +V   +   +++S  GL+        Y           ++APE
Sbjct: 120 SK---NFVHRDLAARNCLVT--ENLVVKISDFGLSRDIYEDDYYRKRGGGKLPIKWMAPE 174

Query: 848 T-KESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVD 905
           + K+ K  T K D++ FG++L ++ T G+ P                  Y     +  ++
Sbjct: 175 SLKDGK-FTSKSDVWSFGVLLWEIFTLGEQP------------------YPGMSNEEVLE 215

Query: 906 PFIRGHVSSI----QNEIVEIMNLALHCTAGDPTARPCASDVTKTL 947
               G+         +E+ E+M   L C A DP  RP  S++ + L
Sbjct: 216 LLEDGYRLPRPENCPDELYELM---LQCWAYDPEDRPTFSELVEDL 258

Length = 258

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.1 bits (182), Expect = 2e-13
 Identities = 33/87 (37%), Positives = 56/87 (64%)

Query: 282 DLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIP 341
            L +  L G IP ++ +L++L+ ++L  N+  G IP SL S+  L+VL L  N F+G IP
Sbjct: 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483

Query: 342 SNLGKQNNLTVIDLSTNFLTGKIPETL 368
            +LG+  +L +++L+ N L+G++P  L
Sbjct: 484 ESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 70.6 bits (174), Expect = 3e-13
 Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 14/154 (9%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALR 792
             I HP IV+LH   ++E+  YLV EY  G EL   L      S ER R  A  I  AL 
Sbjct: 48  SRINHPFIVKLHYAFQTEEKLYLVLEYAPGGELFSHLSKEGRFSEERARFYAAEIVLALE 107

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY--CTDSKSINSSA----YVAP 846
           +LH   S  ++  D+ P  +++D   + H++L+  GLA    ++    N+      Y+AP
Sbjct: 108 YLH---SLGIIYRDLKPENILLD--ADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAP 162

Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           E    K   +  D +  G++L ++LTGK P  A+
Sbjct: 163 EVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAE 196

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.5 bits (178), Expect = 6e-13
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 2/89 (2%)

Query: 115 LNLSNNNFTGPVP--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEI 172
           L L N    G +P  I  L  L+ ++LS N + G IP  +GS + L+VLDL  N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 173 PLSISNITSLQIFTLASNQLIGSIPREIG 201
           P S+  +TSL+I  L  N L G +P  +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 69.1 bits (170), Expect = 8e-13
 Identities = 58/232 (25%), Positives = 99/232 (42%), Gaps = 50/232 (21%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKAL 791
           + + HPN+V+L GVC  E+  Y+V EY+EG +L   LR     LS       A+ IA+ +
Sbjct: 56  RKLDHPNVVKLLGVCTEEEPLYIVMEYMEGGDLLSYLRKNRPKLSLSDLLSFALQIARGM 115

Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYV------- 844
            +L        +  D++    +V   +   +++S  GL     S+ +    Y        
Sbjct: 116 EYLESKN---FIHRDLAARNCLVG--ENLVVKISDFGL-----SRDLYDDDYYRKRGGKL 165

Query: 845 -----APETKESKDITEKGDIYGFGLILIDLLT-GKSPAD--ADFGVHESIVEWAR-YCY 895
                APE+ +    T K D++ FG++L ++ T G+ P    ++  V E +    R    
Sbjct: 166 PIRWMAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEYLKNGYRLPQP 225

Query: 896 SDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL 947
            +C                   E+ ++M   L C A DP  RP  S++ + L
Sbjct: 226 PNCP-----------------PELYDLM---LQCWAEDPEDRPTFSELVEIL 257

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 68.3 bits (168), Expect = 1e-12
 Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 51/233 (21%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKA 790
           + + HPNIV+L GVC  E+   +V EY+ G +L + LR      LS       A+ IA+ 
Sbjct: 56  RKLDHPNIVKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARG 115

Query: 791 LRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYV------ 844
           + +L        +  D++    +V   +   +++S  GL     S+ +    Y       
Sbjct: 116 MEYLESKN---FIHRDLAARNCLVG--ENLVVKISDFGL-----SRDLYDDDYYKVKGGK 165

Query: 845 ------APETKESKDITEKGDIYGFGLILIDLLT-GKSPAD--ADFGVHESIVEWAR-YC 894
                 APE+ +    T K D++ FG++L ++ T G+ P    ++  V E + +  R   
Sbjct: 166 LPIRWMAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEEPYPGMSNAEVLEYLKKGYRLPK 225

Query: 895 YSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL 947
             +C                   E+ ++M   L C A DP  RP  S++ + L
Sbjct: 226 PPNCP-----------------PELYKLM---LQCWAEDPEDRPTFSELVEIL 258

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 68.3 bits (168), Expect = 2e-12
 Identities = 65/235 (27%), Positives = 103/235 (43%), Gaps = 53/235 (22%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN------------LSWERRRKVAIGI 787
           HPN+VRL GVC  E+  YLV EY+EG +L + LR             LS +     AI I
Sbjct: 55  HPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQI 114

Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSAYV 844
           AK + +L    S   V  D++    +V   ++  +++S  GL+   Y  D     +   +
Sbjct: 115 AKGMEYLA---SKKFVHRDLAARNCLVG--EDLVVKISDFGLSRDVYDDDYYRKKTGGKL 169

Query: 845 -----APETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDC 898
                APE+ +    T K D++ FG++L ++ T G +P                  Y   
Sbjct: 170 PIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATP------------------YPGL 211

Query: 899 HLDTWVDPFIR-GHV----SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE 948
             +  V  ++R G+         +E+ E+M   L C   DP  RP  S++ + LE
Sbjct: 212 SNEE-VLEYLRKGYRLPKPEYCPDELYELM---LSCWQLDPEDRPTFSELVERLE 262

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 69.4 bits (168), Expect = 3e-12
 Identities = 61/271 (22%), Positives = 102/271 (37%), Gaps = 39/271 (14%)

Query: 695 GVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQ----FGKLIMHPNIVRLHGVC 750
           G  S  +V  LA D + V  K++     + S       +       L   PNIV+L+   
Sbjct: 9   GEGSFGEVY-LARDRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFF 67

Query: 751 RSEKAAYLVYEYIEGKELSEVLRN------LSWERRRKVAIGIAKALRFLHFHCSPSVVA 804
           + E + YLV EY++G  L ++L+       LS      +   I  AL +LH      ++ 
Sbjct: 68  QDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKG---IIH 124

Query: 805 GDVSPGKVIVDGKDEPHLRLSVPGLA------------YCTDSKSINSSAYVAPET---K 849
            D+ P  +++D +D   ++L   GLA                S S+ +  Y+APE     
Sbjct: 125 RDIKPENILLD-RDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGL 183

Query: 850 ESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR 909
                +   DI+  G+ L +LLTG  P + +     +             +     P + 
Sbjct: 184 SLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTL-------KIILELPTPSLA 236

Query: 910 GHVSSI--QNEIVEIMNLALHCTAGDPTARP 938
             +S    +       +L     A DP  R 
Sbjct: 237 SPLSPSNPELISKAASDLLKKLLAKDPKNRL 267

Length = 384

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.5 bits (170), Expect = 4e-12
 Identities = 33/79 (41%), Positives = 45/79 (56%)

Query: 314 GKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGS 373
           G IP+ ++ +  LQ + L  N   G IP +LG   +L V+DLS N   G IPE+L    S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 374 LFKLILFSNSLEGKIPNSL 392
           L  L L  NSL G++P +L
Sbjct: 492 LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.9 bits (166), Expect = 2e-11
 Identities = 34/82 (41%), Positives = 47/82 (57%)

Query: 264 LTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASM 323
           L G IP  I  L+ L S +LS N + G IP  +  + +LE+L L  N+F G IP SL  +
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 324 PKLQVLQLWSNQFSGEIPSNLG 345
             L++L L  N  SG +P+ LG
Sbjct: 490 TSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.1 bits (164), Expect = 2e-11
 Identities = 29/82 (35%), Positives = 47/82 (57%)

Query: 384 LEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEM 443
           L G IPN +S  + L+ + L  N + G +      +  +  LD+S N  +G I E   ++
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 444 TSLQMLNLAGNNFSGKLPDSFG 465
           TSL++LNL GN+ SG++P + G
Sbjct: 490 TSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 66.1 bits (161), Expect = 3e-11
 Identities = 86/296 (29%), Positives = 133/296 (44%), Gaps = 36/296 (12%)

Query: 171 EIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSL 230
            +P S+S + SL + + +           +  L  L  + L  N L   I  E+ +LT+L
Sbjct: 61  LLPSSLSRLLSLDLLSPSGIS-SLDGSENLLNLLPLPSLDLNLNRLRSNIS-ELLELTNL 118

Query: 231 NHLDLVYNNLTGQIPPSFGNL-SNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLS 289
             LDL  NN+T  IPP  G L SNL+ L L  NK+  S+P  +  L +L + DLS N LS
Sbjct: 119 TSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS 176

Query: 290 GEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNN 349
            ++P+ +  L NL  L L S N    +P  +  +  L+ L L +N    E+ S+L    N
Sbjct: 177 -DLPKLLSNLSNLNNLDL-SGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN 233

Query: 350 LTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLS 409
           L+ ++LS N L                           +P S+    +L  + L NN++S
Sbjct: 234 LSGLELSNNKLE-------------------------DLPESIGNLSNLETLDLSNNQIS 268

Query: 410 GELSSEFTRLPLVYFLDISGNDLSGRIGEQ-KWEMTSLQMLNLAGNNFSGKLPDSF 464
             +SS  +   L   LD+SGN LS  +       +    +LNL     + +L  + 
Sbjct: 269 -SISSLGSLTNLRE-LDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNS 322

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 4e-11
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 449 LNLAGNNFSGKLPDSFGSDQ-LENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDI 507
           L L      G +P+     + L++++LS N   G IP S G ++ L  L +S N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 508 PEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLG 542
           PE L     L  L+L+ N LSG +PA+L    +  
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 64.2 bits (156), Expect = 1e-10
 Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 12/247 (4%)

Query: 72  NISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTG-PVPIGS 130
           N    + S + +LP++++++LS N LS ++P  + + SN L  L+LS N  +  P  I  
Sbjct: 150 NKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSN-LNNLDLSGNKISDLPPEIEL 207

Query: 131 LSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASN 190
           LS LE LDLSNN +  ++   + +   L  L+L  N  + ++P SI N+++L+   L++N
Sbjct: 208 LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNN 265

Query: 191 QLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGN 250
           Q+  S    +G L NL+ + L  N+LS  +P     L  L  L    N L          
Sbjct: 266 QI--SSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLL---NLLLTLKALELKL 320

Query: 251 LSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSN 310
            S L    +  N  T S P+++  L+SL +    DN    E       ++N   +    +
Sbjct: 321 NSILLNNNILSNGET-SSPEALSILESLNNLWTLDN-ALDESNLNRYIVKNPNAIGSLLD 378

Query: 311 NFTGKIP 317
                + 
Sbjct: 379 LVKKHVN 385

Length = 394

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 63.4 bits (155), Expect = 1e-10
 Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 30/168 (17%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALR 792
           +L  HP I++L+   + E+  Y V EY    EL + +R   +L  +  R  A  I  AL 
Sbjct: 57  RLNGHPGIIKLYYTFQDEENLYFVLEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALE 116

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGK--------------DEPHLRLSVPGLAYCTDSKSI 838
           +LH   S  ++  D+ P  +++D                D      S  G A   DS+  
Sbjct: 117 YLH---SKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIE 173

Query: 839 NSSA----------YVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
            +            YV+PE    K   +  D++  G I+  +LTGK P
Sbjct: 174 KNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPP 221

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.3 bits (154), Expect = 4e-10
 Identities = 33/84 (39%), Positives = 43/84 (51%)

Query: 338 GEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKS 397
           G IP+++ K  +L  I+LS N + G IP +L    SL  L L  NS  G IP SL    S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 398 LRRVRLQNNRLSGELSSEFTRLPL 421
           LR + L  N LSG + +      L
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 60.5 bits (147), Expect = 8e-10
 Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 23/184 (12%)

Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFL 794
           + HP I+RL      ++  Y++ EY+ G EL   LRN    S       A  I  AL +L
Sbjct: 58  VSHPFIIRLFWTEHDQRFLYMLMEYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYL 117

Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKES 851
           H   S  +V  D+ P  +++D   E H++L+  G A     ++     +  Y+APE  +S
Sbjct: 118 H---SKEIVYRDLKPENILLD--KEGHIKLTDFGFAKKLRDRTWTLCGTPEYLAPEVIQS 172

Query: 852 KDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESI----VEWARYCYSDCHLDTWVD 905
           K   +  D +  G+++ ++L G  P   D  FG++E I    +E+ R      HLD +  
Sbjct: 173 KGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGIYEKILAGKLEFPR------HLDLYAK 226

Query: 906 PFIR 909
             I+
Sbjct: 227 DLIK 230

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 12/176 (6%)

Query: 710 QFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHGVCRSEKAAYLVYEYIEGK 766
            FV  K I +  I   +    + Q   L+    HPNIV+  G   +  + Y++ EY E  
Sbjct: 26  DFVAIKQISLEKIKEEAL-KSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYAENG 84

Query: 767 ELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSV 826
            L ++++         VA+ + + L+ L +     V+  D+     I+  KD   ++L+ 
Sbjct: 85  SLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIK-AANILTTKDG-VVKLAD 142

Query: 827 PGLAYCTDSKSINSSAYV------APETKESKDITEKGDIYGFGLILIDLLTGKSP 876
            G+A   +  S + ++ V      APE  E    +   DI+  G  +I+LLTG  P
Sbjct: 143 FGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPP 198

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 59.6 bits (144), Expect = 3e-09
 Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 29/219 (13%)

Query: 387 KIPNSLSTCKSLRRVRLQNNRLSGELSSEF---------------TRLPLVYF------- 424
               +L     L  + L  NRL   +S                  T +P +         
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLK 143

Query: 425 -LDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTI 483
            LD+S N +   +      + +L+ L+L+ N+ S           L NLDLS N+ S  +
Sbjct: 144 ELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DL 201

Query: 484 PRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQ 543
           P     LS L +L +S N +  ++   LS+ K L  L+LSNN+L   +P S+  +  L  
Sbjct: 202 PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLET 259

Query: 544 LDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST 582
           LDLS NQ+S     +LG + +L ++++S N    +LP  
Sbjct: 260 LDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLI 296

Length = 394

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 22/196 (11%)

Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL--IMHPNIVRLHG--VCRSEKA 755
            KVR   +D + +V K ID   +T       VS+   L  + HPNIVR +   + RS + 
Sbjct: 17  RKVRRK-SDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQT 75

Query: 756 AYLVYEYIEGKELSEVLRNLSWERRR-------KVAIGIAKALRFLHF--HCSPSVVAGD 806
            Y+V EY EG +L+++++    ER+        ++   +  AL   H       +V+  D
Sbjct: 76  LYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRD 135

Query: 807 VSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYV------APETKESKDITEKGDI 860
           + P  + +D     +++L   GLA      S  +  YV      +PE        EK DI
Sbjct: 136 LKPANIFLDAN--NNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDI 193

Query: 861 YGFGLILIDLLTGKSP 876
           +  G ++ +L     P
Sbjct: 194 WSLGCLIYELCALSPP 209

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 58.0 bits (141), Expect = 5e-09
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 18/150 (12%)

Query: 740 HPNIVRLHGVCRSE--KAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFL 794
           HPNIVR +G  R E      +  EY+ G  LS +L+    L     RK    I + L +L
Sbjct: 58  HPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYL 117

Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS-------VPGLAYCTDSKSIN-SSAYVAP 846
           H +    +V  D+    ++VD      ++L+       +  +     + S+  +  ++AP
Sbjct: 118 HSNG---IVHRDIKGANILVDSDGV--VKLADFGCAKRLGDIETGEGTGSVRGTPYWMAP 172

Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           E    ++     DI+  G  +I++ TGK P
Sbjct: 173 EVIRGEEYGRAADIWSLGCTVIEMATGKPP 202

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 57.6 bits (140), Expect = 5e-09
 Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 19/202 (9%)

Query: 686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVR 745
           E L   GK G    YK R      +  +K I   +         ++ Q  K   HPNIV+
Sbjct: 3   EILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEI-QILKKCKHPNIVK 61

Query: 746 LHG--VCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRK----VAIGIAKALRFLHFHCS 799
            +G  + + E   ++V E+  G  L ++L++ +          V   + K L +LH +  
Sbjct: 62  YYGSYLKKDE--LWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSN-- 117

Query: 800 PSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA----YVAPETKESKDI 854
             ++  D+    +++    +  ++L   GL+   +D+K+ N+      ++APE    K  
Sbjct: 118 -GIIHRDIKAANILL--TSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKPY 174

Query: 855 TEKGDIYGFGLILIDLLTGKSP 876
             K DI+  G+  I+L  GK P
Sbjct: 175 DYKADIWSLGITAIELAEGKPP 196

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 6e-09
 Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 520 LDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSL 579
           L L N  L G IP  +S++  L  ++LS N + G IP +LG + SL  +++S+N F+GS+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 580 P-STGAFLAINATAVAGNDLCG 600
           P S G   ++    + GN L G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 57.2 bits (138), Expect = 7e-09
 Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 13/142 (9%)

Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKEL-SEVLR--NLSWERRRKVAIGIAKALRFLHFH 797
           PN+V LH    SE + +LV ++ EG +L S + +  N+  E  ++ A  +  AL  LH  
Sbjct: 45  PNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKFLNIPEECVKRWAAEMVVALDALH-- 102

Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPG----LAYCTDSKSINSSAYVAPETKESKD 853
               +V  D++P  +++D  D  H++L+       +    D +++  + Y APE     +
Sbjct: 103 -REGIVCRDLNPNNILLD--DRGHIQLTYFSRWSEVEDSCDGEAV-ENMYCAPEVGGISE 158

Query: 854 ITEKGDIYGFGLILIDLLTGKS 875
            TE  D +  G IL +LLTGK+
Sbjct: 159 ETEACDWWSLGAILFELLTGKT 180

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|173643 cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 58/240 (24%), Positives = 108/240 (45%), Gaps = 35/240 (14%)

Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V+ K++D +    S  + + +   + + H +IV L+GVC  +    +V E++E   L   
Sbjct: 35  VILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENIMVEEFVEFGPLDLF 94

Query: 772 LRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV-----DGKDEPHL 822
           +      L+   + KVA  +A AL +L       +V G+V    +++     DG+  P +
Sbjct: 95  MHRKSDVLTTPWKFKVAKQLASALSYLE---DKDLVHGNVCTKNILLAREGIDGECGPFI 151

Query: 823 RLSVPGLAYCTDSKS--INSSAYVAPE-TKESKDITEKGDIYGFGLILIDL-LTGKSPAD 878
           +LS PG+     S+   +    ++APE  ++SK+++   D + FG  L ++   G+ P  
Sbjct: 152 KLSDPGIPITVLSRQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLK 211

Query: 879 ADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARP 938
                 +++ E  R+    C L           V+    E+ ++M    HC   DP  RP
Sbjct: 212 -----DKTLAEKERFYEGQCML-----------VTPSCKELADLMT---HCMNYDPNQRP 252

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 262

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 56.9 bits (137), Expect = 2e-08
 Identities = 75/296 (25%), Positives = 121/296 (40%), Gaps = 16/296 (5%)

Query: 258 FLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTG--K 315
            +  N    ++    +   +L     +              L  L  L L S +      
Sbjct: 32  SINLNFPDSNLESVAVNRLALNLSSNTLL-------LLPSSLSRLLSLDLLSPSGISSLD 84

Query: 316 IPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLF 375
              +L ++  L  L L  N+    I S L +  NLT +DL  N +T  IP  +    S  
Sbjct: 85  GSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNL 142

Query: 376 KLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGR 435
           K +  S++    +P+ L    +L+ + L  N LS +L    + L  +  LD+SGN +S  
Sbjct: 143 KELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-D 200

Query: 436 IGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQ 495
           +  +   +++L+ L+L+ N+    L        L  L+LS N+    +P S G LS L  
Sbjct: 201 LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLET 259

Query: 496 LKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQL 551
           L +S N++       L S   L  LDLS N LS  +P     + +L  L      L
Sbjct: 260 LDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTL 313

Length = 394

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 15/155 (9%)

Query: 736 KLIMH-----PNIVRLHGVCRSEKAAYLVYEYIEGKE---LSEVLRNLSWERRRKVAIGI 787
           + IM      P + +L+   +S+   YLV EY+ G +   L + L  L  +  ++    +
Sbjct: 47  RAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNGGDCASLIKTLGGLPEDWAKQYIAEV 106

Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC--TDSKSINSSAYVA 845
              +  LH      ++  D+ P  +++D     HL+L+  GL+     + K + +  Y+A
Sbjct: 107 VLGVEDLH---QRGIIHRDIKPENLLIDQTG--HLKLTDFGLSRNGLENKKFVGTPDYLA 161

Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           PET       +  D +  G ++ + L G  P  A+
Sbjct: 162 PETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAE 196

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 57.5 bits (139), Expect = 3e-08
 Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 23/154 (14%)

Query: 740 HPNIVRL--HGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFL 794
           HPNIV L   G        + V+EY+ G+ L EVL     L      ++ + +  AL   
Sbjct: 37  HPNIVALLDSGEA-PPGLLFAVFEYVPGRTLREVLAADGALPAGETGRLMLQVLDALACA 95

Query: 795 HFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLS-------VPG------LAYCTDSKSINS 840
           H   +  +V  D+ P  ++V      PH ++        +PG            ++ + +
Sbjct: 96  H---NQGIVHRDLKPQNIMVSQTGVRPHAKVLDFGIGTLLPGVRDADVATLTRTTEVLGT 152

Query: 841 SAYVAPETKESKDITEKGDIYGFGLILIDLLTGK 874
             Y APE    + +T   D+Y +GLI ++ LTG+
Sbjct: 153 PTYCAPEQLRGEPVTPNSDLYAWGLIFLECLTGQ 186

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 55.8 bits (134), Expect = 4e-08
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 18/150 (12%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
           HP +V LH   ++E   + V EY+ G +L    +  R L  E  R  +  I+ AL +LH 
Sbjct: 55  HPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH- 113

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC--------TDSKSINSSAYVAPET 848
                ++  D+    V++D   E H++L+  G+  C        T S    +  Y+APE 
Sbjct: 114 --ERGIIYRDLKLDNVLLD--SEGHIKLTDYGM--CKEGLRPGDTTSTFCGTPNYIAPEI 167

Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSPAD 878
              +D     D +  G+++ +++ G+SP D
Sbjct: 168 LRGEDYGFSVDWWALGVLMFEMMAGRSPFD 197

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 27/162 (16%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALR 792
           K + H N+V L  V R +K  YLV+E+++   L ++ +    L   R RK    I + + 
Sbjct: 55  KQLRHENLVNLIEVFRRKKRLYLVFEFVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIE 114

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-------RLSVPGLAYCTDSKSINSSAYVA 845
           F H H   +++  D+ P  ++V       L        L+ PG  Y TD   + +  Y A
Sbjct: 115 FCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVY-TD--YVATRWYRA 168

Query: 846 PE-----TKESKDITEKGDIYGFGLILIDLLTGKS--PADAD 880
           PE     TK  + +    DI+  G ++ ++LTG+   P D+D
Sbjct: 169 PELLVGDTKYGRAV----DIWAVGCLVTEMLTGEPLFPGDSD 206

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.9 bits (120), Expect = 6e-08
 Identities = 27/60 (45%), Positives = 32/60 (53%)

Query: 229 SLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYL 288
           +L  LDL  N LT     +F  L NL+ L L  N LT   P++  GL SL S DLS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.6 bits (134), Expect = 1e-07
 Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 401 VRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKL 460
           + L N  L G + ++ ++L  +  +++SGN + G I      +TSL++L+L+ N+F+G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 461 PDSFGS-DQLENLDLSENRFSGTIPRSFG 488
           P+S G    L  L+L+ N  SG +P + G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 33/211 (15%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDV----SQFGKLI--------- 738
           G       YKVR   N    +  K I+V      +F  D        G ++         
Sbjct: 9   GSGAFGCVYKVRKKNNGQNLLALKEINV---HNPAFGKDKRERDKSIGDIVSEVTIIKEQ 65

Query: 739 -MHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL-------RNLSWERRRKVAIGIAKA 790
             HPNIVR +         Y+V + IEG  L E         +  + ER   + + +  A
Sbjct: 66  LRHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLA 125

Query: 791 LRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA-----YVA 845
           LR+L  H    +V  D++P  +++   D+  + ++  GLA     +S  +S      Y  
Sbjct: 126 LRYL--HKEKRIVHRDLTPNNIMLGEDDK--VTITDFGLAKQKQPESKLTSVVGTILYSC 181

Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE  +++   EK D++ FG IL  + T + P
Sbjct: 182 PEIVKNEPYGEKADVWAFGCILYQMCTLQPP 212

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 54.1 bits (131), Expect = 1e-07
 Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 30/155 (19%)

Query: 740 HPNIVRLHGVCRSE--KAAYLVYEYIEGKELSEVLR-NLSWE-RRRKVAIGIAKALRFLH 795
           HPNIV+L  V ++E  K  YLV+EY+E  +L  V+R N+  +  +R +   + KAL+++H
Sbjct: 66  HPNIVKLLNVIKAENDKDIYLVFEYME-TDLHAVIRANILEDVHKRYIMYQLLKALKYIH 124

Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA-----YVA----- 845
              S +V+  D+ P  ++++   +  ++L+  GLA        N        YVA     
Sbjct: 125 ---SGNVIHRDLKPSNILLNS--DCRVKLADFGLARSLSELEENPENPVLTDYVATRWYR 179

Query: 846 -PE-----TKESKDITEKGDIYGFGLILIDLLTGK 874
            PE     T+ +K +    D++  G IL ++L GK
Sbjct: 180 APEILLGSTRYTKGV----DMWSVGCILGEMLLGK 210

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 18/156 (11%)

Query: 734 FGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKA 790
           F +   +P +V LH   ++    +LV EY+ G +L    +  R L  E  R  A  I  A
Sbjct: 49  FEQASSNPFLVGLHSCFQTTSRLFLVIEYVNGGDLMFHMQRQRKLPEEHARFYAAEICIA 108

Query: 791 LRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC--------TDSKSINSSA 842
           L FLH      ++  D+    V++D   + H++L+  G+  C        T S    +  
Sbjct: 109 LNFLH---ERGIIYRDLKLDNVLLDA--DGHIKLTDYGM--CKEGLGPGDTTSTFCGTPN 161

Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSPAD 878
           Y+APE    ++     D +  G+++ +++ G+SP D
Sbjct: 162 YIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFD 197

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 76/338 (22%), Positives = 112/338 (33%), Gaps = 81/338 (23%)

Query: 158 LKVLDLGGNVL-VGEIPLSISNIT---SLQIFTLASNQLIGSIPREIGQLRNLKWIYLGY 213
           L+VL L GN L         S +    SL+   L+ N+            R L+ +  G 
Sbjct: 25  LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-------PRGLQSLLQGL 77

Query: 214 NNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNL---SNLRYLFLYQNKLTGSI-P 269
               G           L  LDL  N L         +L   S+L+ L L  N L      
Sbjct: 78  TKGCG-----------LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR 126

Query: 270 KSILGLKS----LVSFDLSDNYLSGE----IPEEVIQLQNLEILHLFSNNFTG----KIP 317
               GLK     L    L  N L G     + + +   ++L+ L+L +N         + 
Sbjct: 127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA 186

Query: 318 SSLASMPKLQVLQLWSNQFSGEIPSNLG---KQN-NLTVIDLSTNFLTGKIPETLCDSGS 373
             L +   L+VL L +N  + E  S L        +L V++L  N LT      L  +  
Sbjct: 187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA-- 244

Query: 374 LFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLS 433
                             LS   SL  + L  N ++                D    DL+
Sbjct: 245 -----------------LLSPNISLLTLSLSCNDIT----------------DDGAKDLA 271

Query: 434 GRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLEN 471
             + E++    SL  L+L GN F  +         LE 
Sbjct: 272 EVLAEKE----SLLELDLRGNKFGEEGAQLLAESLLEP 305

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 22/178 (12%)

Query: 712 VVKKIID-VNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE 770
           V+ K++D  +   + SF+   S   +L  H ++V  +GVC     + +V EY++   L  
Sbjct: 30  VLLKVLDKSHRNYSESFFEAASMMSQL-SHKHLVLNYGVCVCGDESIMVQEYVKFGSLDT 88

Query: 771 VLR------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV----DGK--D 818
            L+      N+SW  + +VA  +A AL FL       +  G+V    V++    D K  +
Sbjct: 89  YLKKNKNLINISW--KLEVAKQLAWALHFLE---DKGLTHGNVCAKNVLLIREEDRKTGN 143

Query: 819 EPHLRLSVPGLAYCTDSKSI--NSSAYVAPE-TKESKDITEKGDIYGFGLILIDLLTG 873
            P ++LS PG++     K I      +V PE  +  ++++   D + FG  L ++ +G
Sbjct: 144 PPFIKLSDPGISITVLPKEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSG 201

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 258

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.5 bits (114), Expect = 4e-07
 Identities = 25/60 (41%), Positives = 30/60 (50%)

Query: 468 QLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQL 527
            L++LDLS NR +     +F  L  L  L +S N L    PE  S    L SLDLS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 45/199 (22%), Positives = 88/199 (44%), Gaps = 15/199 (7%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL--IMHPNIVRLHGV 749
           GK    S YKV+ L+ D QF   K +D+ +++       V++   L  + HPNI+     
Sbjct: 9   GKGSYGSVYKVKRLS-DNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEA 67

Query: 750 CRSEKAAYLVYEYIEGKELSEVLRNLSWERRR-------KVAIGIAKALRFLHFHCSPSV 802
                   +V EY    +LS+ +     +R+        ++ I + + L+ LH      +
Sbjct: 68  FLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALH---EQKI 124

Query: 803 VAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDITEKGDI 860
           +  D+    +++   D   +  L +  +     +K+ I +  Y+APE  + +  + K DI
Sbjct: 125 LHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKTQIGTPHYMAPEVWKGRPYSYKSDI 184

Query: 861 YGFGLILIDLLTGKSPADA 879
           +  G +L ++ T   P +A
Sbjct: 185 WSLGCLLYEMATFAPPFEA 203

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 51.9 bits (125), Expect = 6e-07
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 21/166 (12%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW----ERRRKVAIGIAKALRFLH 795
            P IV  +G   +     +  EY++G  L ++L+ +          K+A+ + K L +LH
Sbjct: 58  SPYIVGFYGAFYNNGDISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLH 117

Query: 796 -FHCSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSK---SINSSAYVAPETKE 850
             H    ++  DV P  ++V+ + +  L    V G     +S     + +S+Y+APE  +
Sbjct: 118 EKH---KIIHRDVKPSNILVNSRGQIKLCDFGVSG--QLVNSLAKTFVGTSSYMAPERIQ 172

Query: 851 SKDITEKGDIYGFGLILIDLLTGK-------SPADADFGVHESIVE 889
             D + K DI+  GL LI+L TG+        P D  F + + IV 
Sbjct: 173 GNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVN 218

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 52.1 bits (125), Expect = 6e-07
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 18/150 (12%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
           HP +V LH   ++E   + V E++ G +L    +  R L  E  R  +  I+ AL FLH 
Sbjct: 55  HPFLVGLHSCFQTESRLFFVIEFVSGGDLMFHMQRQRKLPEEHARFYSAEISLALNFLH- 113

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC--------TDSKSINSSAYVAPET 848
                ++  D+    V++D   E H++L+  G+  C        T S    +  Y+APE 
Sbjct: 114 --ERGIIYRDLKLDNVLLDA--EGHIKLTDYGM--CKEGIRPGDTTSTFCGTPNYIAPEI 167

Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSPAD 878
              +D     D +  G+++ +++ G+SP D
Sbjct: 168 LRGEDYGFSVDWWALGVLMFEMMAGRSPFD 197

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 51.7 bits (124), Expect = 7e-07
 Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 29/210 (13%)

Query: 690 SRGKKGVSSS-YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQ-------FGKLIMHP 741
           SR  +G   S  K R     M F +K      TITT    PD+ +         K    P
Sbjct: 7   SRLGEGAGGSVTKCRLKNTGMIFALK------TITTDPN-PDLQKQILRELEINKSCKSP 59

Query: 742 NIVRLHGVCRSEKAA--YLVYEYIEGKELSEVLRNLSWERRR-------KVAIGIAKALR 792
            IV+ +G    E ++   +  EY EG  L  + + +     R       K+A  + K L 
Sbjct: 60  YIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLS 119

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPG-LAYCTDSKSINSSAYVAPETKE 850
           +LH   S  ++  D+ P  +++  K +  L    V G L          +S Y+APE  +
Sbjct: 120 YLH---SRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAGTFTGTSFYMAPERIQ 176

Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
            K  +   D++  GL L+++   + P   +
Sbjct: 177 GKPYSITSDVWSLGLTLLEVAQNRFPFPPE 206

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 9e-07
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 23/92 (25%)

Query: 62  HVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNN 121
           H+ +I LS  +I G I  S+  +  +E ++LS N  +G IP                   
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES----------------- 485

Query: 122 FTGPVPIGSLSRLEILDLSNNMLSGKIPEEIG 153
                 +G L+ L IL+L+ N LSG++P  +G
Sbjct: 486 ------LGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 47/214 (21%), Positives = 87/214 (40%), Gaps = 41/214 (19%)

Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM----HPNIVRLHGVCRSEKA 755
             V+  + +  F +K +   + + T     +     K I+    HP IV+L+   + +K 
Sbjct: 10  ELVKVKSKNRTFALKCVKKRHIVETGQ--QEHIFSEKEILEECNHPFIVKLYRTFKDKKY 67

Query: 756 AYLVYEYIEGKELSEVLRNL----SWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGK 811
            Y++ EY  G EL  +LR+      +  R  +A  +  A  +LH   +  ++  D+ P  
Sbjct: 68  IYMLMEYCLGGELWTILRDRGLFDEYTARFYIA-CVVLAFEYLH---NRGIIYRDLKPEN 123

Query: 812 VIVDGKDEPHLRLSVPGLAYCTD---SKSINSSA----------YVAPETKESKDITEKG 858
           +++D            G     D   +K + S            YVAPE   +K      
Sbjct: 124 LLLDSN----------GYVKLVDFGFAKKLKSGQKTWTFCGTPEYVAPEIILNKGYDFSV 173

Query: 859 DIYGFGLILIDLLTGKSP----ADADFGVHESIV 888
           D +  G++L +LLTG+ P     +    ++  I+
Sbjct: 174 DYWSLGILLYELLTGRPPFGEDDEDPMEIYNDIL 207

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 28/163 (17%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL----RNLSWERRRKVAIGIAKAL 791
           + + H NIV L    R +   YLV+EY+E + L E+L      L  +  R     + +A+
Sbjct: 55  RQLRHENIVNLKEAFRRKGRLYLVFEYVE-RTLLELLEASPGGLPPDAVRSYIWQLLQAI 113

Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-------RLSVPGLAYCTDSKSINSSAYV 844
            + H H   +++  D+ P  ++V       L        L     +  TD   + +  Y 
Sbjct: 114 AYCHSH---NIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTD--YVATRWYR 168

Query: 845 APE-----TKESKDITEKGDIYGFGLILIDLLTGKS--PADAD 880
           APE     T   K +    D++  G I+ +LL G+   P D+D
Sbjct: 169 APELLVGDTNYGKPV----DVWAIGCIMAELLDGEPLFPGDSD 207

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 50/235 (21%), Positives = 99/235 (42%), Gaps = 41/235 (17%)

Query: 730 DVSQFGKLIM---HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG 786
           D  +  K++M   HP +V+L+GVC  +K  Y+V E++E   L   LR    +  + + + 
Sbjct: 45  DFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLS 104

Query: 787 ----IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSS 841
               + + + +L      S +  D++    +V       +++S  G+  Y  D +  +SS
Sbjct: 105 MCQDVCEGMEYLE---RNSFIHRDLAARNCLVS--STGVVKVSDFGMTRYVLDDEYTSSS 159

Query: 842 A------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP--ADADFGVHESIVEWAR 892
                  +  PE       + K D++ FG+++ ++ T GK P    +++ V E I    R
Sbjct: 160 GAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMISRGFR 219

Query: 893 YCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL 947
                           R  ++S    + E+M     C    P  RP  +++ + +
Sbjct: 220 --------------LYRPKLAS--MTVYEVM---YSCWHEKPEGRPTFAELLRAI 255

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 50.6 bits (122), Expect = 2e-06
 Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 33/172 (19%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK------ 789
           + I HP +V L+G  + +   YLV EY+ G EL   LR     +  +    +A+      
Sbjct: 56  QSIRHPFLVNLYGSFQDDSNLYLVMEYVPGGELFSHLR-----KSGRFPEPVARFYAAQV 110

Query: 790 --ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA----- 842
             AL +LH   S  +V  D+ P  +++D   + +++++  G A     K +         
Sbjct: 111 VLALEYLH---SLDIVYRDLKPENLLLD--SDGYIKITDFGFA-----KRVKGRTYTLCG 160

Query: 843 ---YVAPETKESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
              Y+APE   SK   +  D +  G+++ ++L G  P   D    ++E I+E
Sbjct: 161 TPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILE 212

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 50.3 bits (121), Expect = 2e-06
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 22/158 (13%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHF 796
            P +V+L+   + +K  YLV EY+ G +L+ +L N   L  +  R     I  AL +LH 
Sbjct: 52  SPYVVKLYYSFQGKKNLYLVMEYLPGGDLASLLENVGSLDEDVARIYIAEIVLALEYLHS 111

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT--------------DSKSINSSA 842
           +    ++  D+ P  +++D     HL+L+  GL+                 D + + +  
Sbjct: 112 N---GIIHRDLKPDNILID--SNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPD 166

Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           Y+APE    +  ++  D +  G IL + L G  P   +
Sbjct: 167 YIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGE 204

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 737 LIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRF 793
           L+ HPN+V+ +GV    +  Y+  EY  G  L E+L   R L     R   + + + L +
Sbjct: 55  LLKHPNLVKYYGVEVHREKVYIFMEYCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAY 114

Query: 794 LHFHCSPSVVAGDVSPGKVIVDGKDEPHL-------RLSVPGLAYCTDSKSI-NSSAYVA 845
           LH H    +V  D+ P  + +D      L       +L         + +S+  + AY+A
Sbjct: 115 LHSH---GIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMA 171

Query: 846 PETKESKDITEKG---DIYGFGLILIDLLTGKSP 876
           PE          G   DI+  G +++++ TGK P
Sbjct: 172 PEVITGGKGKGHGRAADIWSLGCVVLEMATGKRP 205

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 18/152 (11%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
           HP + +LH   +++   + V EY+ G +L    +        R R  A  I   L+FLH 
Sbjct: 55  HPFLTQLHSCFQTKDRLFFVMEYVNGGDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHE 114

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC--------TDSKSINSSAYVAPET 848
                ++  D+    V++D   E H++++  G+  C        T S    +  Y+APE 
Sbjct: 115 R---GIIYRDLKLDNVLLDS--EGHIKIADFGM--CKEGILGGVTTSTFCGTPDYIAPEI 167

Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
              +      D +  G++L ++L G+SP + D
Sbjct: 168 LSYQPYGPAVDWWALGVLLYEMLAGQSPFEGD 199

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 205 NLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNK 263
           NLK + L  N L+  IP      L +L  LDL  NNLT   P +F  L +LR L L  N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 264 L 264
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 57/265 (21%), Positives = 104/265 (39%), Gaps = 41/265 (15%)

Query: 689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHG 748
             +G   V S   +     ++  VV K++  +   + +F+   S   + + H ++V+L+G
Sbjct: 11  IYKGVLRVQSDLDIVGPGQEVS-VVLKVLGSDHRDSLAFFETASLMSQ-LSHKHLVKLYG 68

Query: 749 VCRSEKAAYLVYEYIEGKELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSV 802
           VC  ++   +V EY++   L   L       +L W  +  VA  +A AL +L       +
Sbjct: 69  VCVRDENI-MVEEYVKFGPLDVFLHREKNNVSLHW--KLDVAKQLASALHYLE---DKKL 122

Query: 803 VAGDVSPGKVIV-----DGKDEPHLRLSVPGLAYCTDSKSI--NSSAYVAPETKE--SKD 853
           V G+V    ++V     +    P ++LS PG+     S+        ++APE        
Sbjct: 123 VHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSREERVERIPWIAPECIRNGQAS 182

Query: 854 ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS 913
           +T   D + FG  L+++ +     +       S  +   Y                 H  
Sbjct: 183 LTIAADKWSFGTTLLEICSN---GEEPLSTLSSSEKERFYQ--------------DQHRL 225

Query: 914 SIQNEIVEIMNLALHCTAGDPTARP 938
            +  +  E+ NL   C   DPT RP
Sbjct: 226 PMP-DCAELANLINQCWTYDPTKRP 249

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 24/189 (12%)

Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVS--QFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE 764
            D + V+ K I V  +T        +  Q  KL+ HPNI+  +     +KA  +V EY  
Sbjct: 23  ADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYAP 82

Query: 765 GKELSEVLRNLSWERRRKVA---------IGIAKALRFLHFHCSPSVVAGDVSPGKVIVD 815
           G  L+E ++    +R   +          + I  AL  +H      ++  D+    +++D
Sbjct: 83  GGTLAEYIQ----KRCNSLLDEDTILHFFVQILLALHHVHTK---LILHRDLKTQNILLD 135

Query: 816 GKDEPHLRLSVPGLAYCTDSKS-----INSSAYVAPETKESKDITEKGDIYGFGLILIDL 870
            K +  +++   G++    SKS     + +  Y++PE  E K   +K DI+  G +L +L
Sbjct: 136 -KHKMVVKIGDFGISKILSSKSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYEL 194

Query: 871 LTGKSPADA 879
            + K   +A
Sbjct: 195 ASLKRAFEA 203

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 19/208 (9%)

Query: 686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKI--IDVNTITTSSFWPDVSQFGKLIMHPNI 743
           E L   GK      +KV   A+   + +K+I    +N         +     KL     I
Sbjct: 3   EILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKL-DSSYI 61

Query: 744 VRLHGVCRSEKAAYLVYEYIEGKELSEVL-----RNLSWERRRKVAIGIAKALRFLHFHC 798
           +R +     +    +V EY E  +L ++L     R L  ++  +  I I   L  LH   
Sbjct: 62  IRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLH--- 118

Query: 799 SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS------INSSAYVAPETKESK 852
           S  ++  D+    + +D  D  ++++   G+A      +      + +  Y++PE  E K
Sbjct: 119 SKKILHRDIKSLNLFLDAYD--NVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDK 176

Query: 853 DITEKGDIYGFGLILIDLLTGKSPADAD 880
              EK D++  G++L +  TGK P DA+
Sbjct: 177 PYNEKSDVWALGVVLYECCTGKHPFDAN 204

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 49.0 bits (117), Expect = 5e-06
 Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 31/160 (19%)

Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----------LSWERRRKVAIGI 787
           + HP++VRL G+C S +   L+ + +    L + +RN          L+W  +      I
Sbjct: 66  VDHPHVVRLLGICLSSQVQ-LITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQ------I 118

Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC--TDSKSINSSA--- 842
           AK + +L       +V  D++   V+V  K   H++++  GLA     D K  ++     
Sbjct: 119 AKGMSYLEEK---RLVHRDLAARNVLV--KTPQHVKITDFGLAKLLDVDEKEYHAEGGKV 173

Query: 843 ---YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPAD 878
              ++A E+   +  T K D++ +G+ + +L+T G  P +
Sbjct: 174 PIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYE 213

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 49.0 bits (117), Expect = 6e-06
 Identities = 40/146 (27%), Positives = 75/146 (51%), Gaps = 10/146 (6%)

Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK-ALRFLHF 796
           + HP IV+LH   ++E   YL+ +++ G +L   L          V   +A+ AL   H 
Sbjct: 55  VNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHL 114

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL---AYCTDSKSIN---SSAYVAPETKE 850
           H S  ++  D+ P  +++D  +E H++L+  GL   +   + K+ +   +  Y+APE   
Sbjct: 115 H-SLGIIYRDLKPENILLD--EEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVN 171

Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
            +  T+  D + FG+++ ++LTG  P
Sbjct: 172 RRGHTQSADWWSFGVLMFEMLTGSLP 197

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 36/177 (20%)

Query: 725 SSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR----------- 773
           S F  ++  F KL  H N+VRL G+CR  +  Y++ EY +  +L + LR           
Sbjct: 53  SEFRRELDMFRKL-SHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKP 111

Query: 774 -NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC 832
             LS +++  +   IA  +  L        V  D++    +V  + E  +++S+  L   
Sbjct: 112 PPLSTKQKVALCTQIALGMDHLSNA---RFVHRDLAARNCLVSSQRE--VKVSLLSL--- 163

Query: 833 TDSKSINSSAY------------VAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
             SK + +S Y            +APE  +  D + K D++ FG+++ ++ T G+ P
Sbjct: 164 --SKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELP 218

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 48.9 bits (116), Expect = 7e-06
 Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 18/152 (11%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           K + HP +V LH   ++    Y V +YI G EL   L   R     R R  A  IA AL 
Sbjct: 51  KNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALG 110

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA--------YV 844
           +LH   S ++V  D+ P  +++D +   H+ L+  GL  C ++   N +         Y+
Sbjct: 111 YLH---SLNIVYRDLKPENILLDSQG--HIVLTDFGL--CKENIEHNGTTSTFCGTPEYL 163

Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           APE    +      D +  G +L ++L G  P
Sbjct: 164 APEVLHKQPYDRTVDWWCLGAVLYEMLYGLPP 195

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 19 HGAELELLLSFKSTVNDPYN-FLSNWDSS-VTFCKWNGISC 57
             + + LL+FKS++N   +  LS+W+ S    C W G++C
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTC 41

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 48.2 bits (115), Expect = 9e-06
 Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 37/166 (22%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN-----------------LSWERRRK 782
           H NIV+ +GVC       +V+EY+E  +L++ LR+                 L+  +  +
Sbjct: 67  HENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQ 126

Query: 783 VAIGIAKALRFL---HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSK 836
           +A+ IA  + +L   HF      V  D++    +V G D   +++   G++   Y TD  
Sbjct: 127 IAVQIASGMVYLASQHF------VHRDLATRNCLV-GYDLV-VKIGDFGMSRDVYTTDYY 178

Query: 837 SINSSA-----YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
            +         ++ PE+   +  T + D++ FG++L ++ T GK P
Sbjct: 179 RVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQP 224

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 48.5 bits (115), Expect = 9e-06
 Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 7/141 (4%)

Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHFH 797
           P IV  +G   S+    +  E+++G  L +VL   + +  E   KV+I + + L +L   
Sbjct: 63  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLRE- 121

Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
               ++  DV P  ++V+ + E  L    V G    + + S + + +Y++PE  +    +
Sbjct: 122 -KHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYS 180

Query: 856 EKGDIYGFGLILIDLLTGKSP 876
            + DI+  GL L++L  G+ P
Sbjct: 181 VQSDIWSMGLSLVELAIGRYP 201

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 48.3 bits (115), Expect = 9e-06
 Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 58/244 (23%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKA----LRFLH 795
           HPNIV+L GVC   K   L++EY+   +L+E LR+ S   +  ++   + A    L  L 
Sbjct: 67  HPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLP 126

Query: 796 FHC------SPSVVAG------------DVSPGKVIVDGKDEPHLRLSVP--GLA---YC 832
             C      +  V AG            D++    +V      ++ + +   GL+   Y 
Sbjct: 127 LSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLVGE----NMVVKIADFGLSRNIYS 182

Query: 833 TDSKSINSS-----AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGV-HE 885
            D    + +      ++ PE+      T + D++ +G++L ++ + G  P    +G+ HE
Sbjct: 183 ADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPY---YGMAHE 239

Query: 886 SIVEWARYCYSDCHLDTWVDPFIRGHVSSI-QNEIVEIMNLALHCTAGDPTARPCASDVT 944
            ++ + R                 G+V S   N  +E+ NL   C +  P+ RP  + + 
Sbjct: 240 EVIYYVR----------------DGNVLSCPDNCPLELYNLMRLCWSKLPSDRPSFASIN 283

Query: 945 KTLE 948
           + L+
Sbjct: 284 RILQ 287

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 71/310 (22%), Positives = 108/310 (34%), Gaps = 57/310 (18%)

Query: 280 SFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSNNFTGK----IPSSLASMPKLQVLQLWSN 334
              L    L  E   E++  L  L++L L  N    +    + S+L   P L+ L   S 
Sbjct: 2   QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKEL-CLSL 60

Query: 335 QFSGEIP-------SNLGKQNNLTVIDLSTNFLTGKIPETLCD---SGSLFKLILFSNSL 384
             +G IP         L K   L  +DLS N L       L     S SL +L L +N L
Sbjct: 61  NETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120

Query: 385 EG----KIPNSLSTCK-SLRRVRLQNNRLSGE----LSSEFTRLPLVYFLDISGNDLSGR 435
                  +   L     +L ++ L  NRL G     L+        +  L+++ N +   
Sbjct: 121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180

Query: 436 IGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRF----SGTIPRSFGRLS 491
                     ++ L                   LE LDL+ N      +  +  +   L 
Sbjct: 181 ---------GIRALAEGLKANC----------NLEVLDLNNNGLTDEGASALAETLASLK 221

Query: 492 ELMQLKISRNKLFGDIPEELSS-----CKKLVSLDLSNNQL--SGHIPAS--LSEMPVLG 542
            L  L +  N L       L+S        L++L LS N +   G    +  L+E   L 
Sbjct: 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL 281

Query: 543 QLDLSENQLS 552
           +LDL  N+  
Sbjct: 282 ELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 14/155 (9%)

Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAI---GIAKALRFL 794
           + HPNIV+  G  R E   Y+  E + G  L+++L+         + +    I   L +L
Sbjct: 59  LQHPNIVQYLGTEREEDNLYIFLELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYL 118

Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSINSSAY-VAPETK 849
           H     + V  D+    ++VD      ++L+  G+A      + +KS   S Y +APE  
Sbjct: 119 H---DRNTVHRDIKGANILVDTNGV--VKLADFGMAKQVVEFSFAKSFKGSPYWMAPEVI 173

Query: 850 ESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGV 883
             +       DI+  G  ++++ TGK P     GV
Sbjct: 174 AQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGV 208

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 22/152 (14%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLH 795
           HPNI+RL GV    +   ++ EY+E   L + LR      +  +   +  GIA  +++L 
Sbjct: 64  HPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLS 123

Query: 796 FHCSPSVVAGDVSPGKVIVDGKDE----------PHLRLSVPGLAYCTDSKSINSSAYVA 845
                  V  D++   ++V+  +             L  S     Y T    I    + A
Sbjct: 124 EMNY---VHRDLAARNILVN-SNLVCKVSDFGLSRRLEDSEA--TYTTKGGKI-PIRWTA 176

Query: 846 PETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
           PE    +  T   D++ FG+++ ++++ G+ P
Sbjct: 177 PEAIAYRKFTSASDVWSFGIVMWEVMSYGERP 208

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed

 Score = 49.0 bits (117), Expect = 1e-05
 Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 35/173 (20%)

Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWER---RRKVAIG--IAKALR 792
           ++HP IV ++ +C      Y    YIEG  L  +L+++ W++    +++A    +   L 
Sbjct: 59  LIHPGIVPVYSICSDGDPVYYTMPYIEGYTLKSLLKSV-WQKESLSKELAEKTSVGAFLS 117

Query: 793 FLHFHC-------SPSVVAGDVSP-----GK----VIVD--------GKDEPHLRLSVPG 828
             H  C       S  V+  D+ P     G     VI+D         ++E  L + V  
Sbjct: 118 IFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDE 177

Query: 829 LAYCTDS-----KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
              C  S     K + +  Y+APE       +E  DIY  G+IL  +LT   P
Sbjct: 178 RNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFP 230

Length = 932

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 39/224 (17%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRR-------KVAIGIA 788
           K + HPN+++ +     +    +V E  +  +LS ++++   ++R        K  + + 
Sbjct: 57  KQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLC 116

Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS------INSSA 842
            AL  +H   S  V+  D+ P  V +       ++L   GL     SK+      + +  
Sbjct: 117 SALEHMH---SRRVMHRDIKPANVFITATGV--VKLGDLGLGRFFSSKTTAAHSLVGTPY 171

Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDT 902
           Y++PE         K DI+  G +L ++   +SP   D              YS C    
Sbjct: 172 YMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD----------KMNLYSLCKKIE 221

Query: 903 WVD--PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVT 944
             D  P    H S    E+ +++N+   C   DP  RP   D+T
Sbjct: 222 QCDYPPLPSDHYSE---ELRQLVNM---CINPDPEKRP---DIT 256

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 18/152 (11%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           K + HP +V LH   ++    Y V +Y+ G EL   L   R+    R R  A  IA AL 
Sbjct: 51  KNVKHPFLVGLHYSFQTADKLYFVLDYVNGGELFFHLQRERSFPEPRARFYAAEIASALG 110

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA--------YV 844
           +LH   S +++  D+ P  +++D   + H+ L+  GL  C +    + +         Y+
Sbjct: 111 YLH---SLNIIYRDLKPENILLD--SQGHVVLTDFGL--CKEGIEHSKTTSTFCGTPEYL 163

Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           APE    +      D +  G +L ++L G  P
Sbjct: 164 APEVLRKQPYDRTVDWWCLGAVLYEMLYGLPP 195

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 67/284 (23%), Positives = 100/284 (35%), Gaps = 72/284 (25%)

Query: 81  IFHLPHVESINLSSNQLSGEIPSDIFS---SSNSLRFLNLSNNNFTGPVP---------I 128
           +  L  ++ + L  N L  E    + S      SL+ L LS N  TG +P         +
Sbjct: 19  LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGL 77

Query: 129 GSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLA 188
                L+ LDLS+N L    P+  G                     S+   +SLQ   L 
Sbjct: 78  TKGCGLQELDLSDNALG---PDGCGVLE------------------SLLRSSSLQELKLN 116

Query: 189 SNQLIGSIPREIGQ-LR----NLKWIYLGYNNLSGEIPKEIGDL----TSLNHLDLVYNN 239
           +N L     R + + L+     L+ + LG N L G   + +         L  L+L  N 
Sbjct: 117 NNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176

Query: 240 LTGQ----IPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEE 295
           +       +        NL  L L  N LT                D   + L+  +   
Sbjct: 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLT----------------DEGASALAETLA-- 218

Query: 296 VIQLQNLEILHLFSNNFTGKIPSSLAS-----MPKLQVLQLWSN 334
              L++LE+L+L  NN T    ++LAS        L  L L  N
Sbjct: 219 --SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 18/174 (10%)

Query: 713 VKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
           VK + D +T    +F  + S    L  HPN+V+L GV       Y+V EY+    L + L
Sbjct: 34  VKCLKDDST-AAQAFLAEASVMTTL-RHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYL 91

Query: 773 RN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
           R+     ++  ++   A+ + + + +L      + V  D++   V+V   ++   ++S  
Sbjct: 92  RSRGRAVITLAQQLGFALDVCEGMEYLE---EKNFVHRDLAARNVLVS--EDLVAKVSDF 146

Query: 828 GLAYCTDSKSINSS----AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
           GLA    S+  +S      + APE    K  + K D++ FG++L ++ + G+ P
Sbjct: 147 GLAK-EASQGQDSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP 199

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 53/250 (21%), Positives = 99/250 (39%), Gaps = 45/250 (18%)

Query: 707 NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
           N ++  +K +   + +    F  +V Q  K + H +++ L  VC   +  Y++ E +E  
Sbjct: 29  NRVRVAIKILKSDDLLKQQDFQKEV-QALKRLRHKHLISLFAVCSVGEPVYIITELMEKG 87

Query: 767 ELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPH 821
            L   LR+     L       +A  +A+ + +L      + +  D++   ++V   ++  
Sbjct: 88  SLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLE---EQNSIHRDLAARNILVG--EDLV 142

Query: 822 LRLSVPGLA-------YCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-G 873
            +++  GLA       Y +  K I    + APE       + K D++ FG++L ++ T G
Sbjct: 143 CKVADFGLARLIKEDVYLSSDKKI-PYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYG 201

Query: 874 KSPADADFGVHESIVEWAR-Y---CYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHC 929
           + P       HE   +    Y   C + C       P              EI  + L C
Sbjct: 202 QVPYPG-MNNHEVYDQITAGYRMPCPAKC-------P-------------QEIYKIMLEC 240

Query: 930 TAGDPTARPC 939
            A +P  RP 
Sbjct: 241 WAAEPEDRPS 250

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 47.7 bits (113), Expect = 2e-05
 Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 18/152 (11%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           K + HP +V LH   ++ +  Y V +Y+ G EL   L   R     R R  A  +A A+ 
Sbjct: 51  KNLKHPFLVGLHYSFQTAEKLYFVLDYVNGGELFFHLQRERCFLEPRARFYAAEVASAIG 110

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC--------TDSKSINSSAYV 844
           +LH   S +++  D+ P  +++D +   H+ L+  GL  C        T S    +  Y+
Sbjct: 111 YLH---SLNIIYRDLKPENILLDSQG--HVVLTDFGL--CKEGVEPEETTSTFCGTPEYL 163

Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           APE    +      D +  G +L ++L G  P
Sbjct: 164 APEVLRKEPYDRTVDWWCLGAVLYEMLYGLPP 195

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 23/165 (13%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLH 795
           HPNI++L  V R +   YLV+E+++  +L +++++    L     +     + + L F H
Sbjct: 57  HPNIIKLLDVFRHKGDLYLVFEFMD-TDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCH 115

Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYV------APETK 849
            H    ++  D+ P  ++++ +    L+L+  GLA    S     + YV      APE  
Sbjct: 116 SH---GILHRDLKPENLLINTEGV--LKLADFGLARSFGSPVRPYTHYVVTRWYRAPELL 170

Query: 850 -ESKDITEKGDIYGFGLILIDLLT------GKSPADADFGVHESI 887
              K  +   DI+  G I  +LL+      GKS  D  F +  ++
Sbjct: 171 LGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTL 215

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 86  HVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGS---LSRLEILDLSNN 142
           +++S++LS+N+L+  IP   F    +L+ L+LS NN T  +   +   L  L  LDLS N
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGN 58

Query: 143 ML 144
            L
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 60/269 (22%), Positives = 88/269 (32%), Gaps = 71/269 (26%)

Query: 320 LASMPKLQVLQLWSNQFSGE----IPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLF 375
           L  +  LQVL+L  N    E    + S L  Q +L  + LS N  TG+IP  L       
Sbjct: 19  LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGL 77

Query: 376 KLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFL---DISGNDL 432
                              C  L+ + L +N L  +       L     L    ++ N L
Sbjct: 78  T----------------KGCG-LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120

Query: 433 SGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSE 492
             R          L+ L  A                LE L L  NR  G          E
Sbjct: 121 GDRGLRLL--AKGLKDLPPA----------------LEKLVLGRNRLEG-------ASCE 155

Query: 493 LMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSG----HIPASLSEMPVLGQLDLSE 548
                         + + L + + L  L+L+NN +       +   L     L  LDL+ 
Sbjct: 156 -------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN 202

Query: 549 NQL----SGKIPQTLGRVASLVQVNISHN 573
           N L    +  + +TL  + SL  +N+  N
Sbjct: 203 NGLTDEGASALAETLASLKSLEVLNLGDN 231

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 46.7 bits (112), Expect = 3e-05
 Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 55/221 (24%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFG--------------KL 737
           GK      Y VR  ++   +V+K+I             D+S                 K 
Sbjct: 9   GKGSFGKVYLVRRKSDGKLYVLKEI-------------DLSNMSEKEREDALNEVKILKK 55

Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRR-------KVAIGIAKA 790
           + HPNI++ +     +    +V EY +G +LS+ ++    E +           + +  A
Sbjct: 56  LNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLA 115

Query: 791 LRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA-------- 842
           L++LH   S  ++  D+ P  + +       ++L   G+     SK ++S+         
Sbjct: 116 LKYLH---SRKILHRDIKPQNIFLTSNG--LVKLGDFGI-----SKVLSSTVDLAKTVVG 165

Query: 843 ---YVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
              Y++PE  ++K    K DI+  G +L +L T K P + +
Sbjct: 166 TPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGE 206

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 47.0 bits (111), Expect = 3e-05
 Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 14/146 (9%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
           HP +  L    +++     V EY+ G EL   L   R  S +R R     I  AL +LH 
Sbjct: 54  HPFLTSLKYSFQTKDRLCFVMEYVNGGELFFHLSRERVFSEDRTRFYGAEIVSALDYLH- 112

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY--CTDSKSINS----SAYVAPETKE 850
             S  +V  D+    +++D   + H++++  GL     TD+ ++ +      Y+APE  E
Sbjct: 113 --SGKIVYRDLKLENLMLD--KDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLE 168

Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
             D     D +G G+++ +++ G+ P
Sbjct: 169 DNDYGRAVDWWGLGVVMYEMMCGRLP 194

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 49/224 (21%)

Query: 736 KLIM---HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRK--------VA 784
           K++M   HPN+V+L+GVC  ++  ++V EY+    L   LR    ER+ K        + 
Sbjct: 51  KVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLR----ERKGKLGTEWLLDMC 106

Query: 785 IGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA- 842
             + +A+ +L  +     +  D++    +V   ++  +++S  GLA Y  D +  +S   
Sbjct: 107 SDVCEAMEYLESNG---FIHRDLAARNCLVG--EDNVVKVSDFGLARYVLDDQYTSSQGT 161

Query: 843 -----YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPAD--ADFGVHESIVEWARYC 894
                +  PE  +    + K D++ FG+++ ++ + GK P +  ++  V ES+    R  
Sbjct: 162 KFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESVSAGYR-- 219

Query: 895 YSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARP 938
                L        R  ++    E+  IM     C    P  RP
Sbjct: 220 -----LY-------RPKLAP--TEVYTIMY---SCWHEKPEDRP 246

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 46.8 bits (111), Expect = 4e-05
 Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 18/152 (11%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
           HP +  LH   +++   + V EY+ G +L    +  R     R R  A  +  AL FLH 
Sbjct: 55  HPFLTALHCCFQTKDRLFFVMEYVNGGDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHR 114

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC--------TDSKSINSSAYVAPET 848
           H    V+  D+    +++D   E H +L+  G+  C        T +    +  Y+APE 
Sbjct: 115 H---GVIYRDLKLDNILLDA--EGHCKLADFGM--CKEGILNGVTTTTFCGTPDYIAPEI 167

Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
            +  +     D +  G+++ +++ G+ P +AD
Sbjct: 168 LQELEYGPSVDWWALGVLMYEMMAGQPPFEAD 199

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 46.0 bits (110), Expect = 4e-05
 Identities = 47/218 (21%), Positives = 84/218 (38%), Gaps = 64/218 (29%)

Query: 694 KGVSSS-YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM----------HPN 742
           +G S   YKVR       + +KKI                 F K ++           P 
Sbjct: 11  QGSSGVVYKVRHKPTGKIYALKKIHVDGDEE----------FRKQLLRELKTLRSCESPY 60

Query: 743 IVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRK--------VAIGIAKALRFL 794
           +V+ +G    E    +V EY++G  L+++L+     +  K        +A  I K L +L
Sbjct: 61  VVKCYGAFYKEGEISIVLEYMDGGSLADLLK-----KVGKIPEPVLAYIARQILKGLDYL 115

Query: 795 H--FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---SKSINSS-------- 841
           H   H    ++  D+ P  ++++ K E  +           D   SK + ++        
Sbjct: 116 HTKRH----IIHRDIKPSNLLINSKGEVKI----------ADFGISKVLENTLDQCNTFV 161

Query: 842 ---AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
               Y++PE  + +  +   DI+  GL L++   GK P
Sbjct: 162 GTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFP 199

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 20/155 (12%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKV-----AIGIAKA 790
           K I HPN+V+L GVC  E   Y++ E++    L + LR  + +    V     A  I+ A
Sbjct: 57  KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSA 116

Query: 791 LRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKSINSSA------- 842
           + +L      + +  D++    +V    E HL +++  GL+      +  + A       
Sbjct: 117 MEYLE---KKNFIHRDLAARNCLV---GENHLVKVADFGLSRLMTGDTYTAHAGAKFPIK 170

Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
           + APE+      + K D++ FG++L ++ T G SP
Sbjct: 171 WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP 205

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 46.2 bits (109), Expect = 5e-05
 Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 11/147 (7%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL-SWERRRKVAIGIAKALRFL 794
           K + H NIV LH +  +EK+  LV+EY++ K+L + L +  +      V + + + LR L
Sbjct: 59  KDLKHANIVTLHDIIHTEKSLTLVFEYLD-KDLKQYLDDCGNSINMHNVKLFLFQLLRGL 117

Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET 848
           ++     V+  D+ P  ++++ + E  L+L+  GLA        T S  + +  Y  P+ 
Sbjct: 118 NYCHRRKVLHRDLKPQNLLINERGE--LKLADFGLARAKSIPTKTYSNEVVTLWYRPPDI 175

Query: 849 -KESKDITEKGDIYGFGLILIDLLTGK 874
              S D + + D++G G I  ++ TG+
Sbjct: 176 LLGSTDYSTQIDMWGVGCIFYEMSTGR 202

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 45.8 bits (108), Expect = 6e-05
 Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 18/152 (11%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           K + HP +V LH   ++ +  Y V +++ G EL   L   R+    R R  A  IA AL 
Sbjct: 51  KNVKHPFLVGLHYSFQTTEKLYFVLDFVNGGELFFHLQRERSFPEPRARFYAAEIASALG 110

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA--------YV 844
           +LH   S ++V  D+ P  +++D +   H+ L+  GL  C +  + + +         Y+
Sbjct: 111 YLH---SINIVYRDLKPENILLDSQG--HVVLTDFGL--CKEGIAQSDTTTTFCGTPEYL 163

Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           APE    +      D +  G +L ++L G  P
Sbjct: 164 APEVIRKQPYDNTVDWWCLGAVLYEMLYGLPP 195

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 45.6 bits (108), Expect = 7e-05
 Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 20/156 (12%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALR 792
           K + H NIV+  G         +  EY+ G  ++ +L N  ++E    R     I K L 
Sbjct: 61  KELQHENIVQYLGSSLDADHLNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLN 120

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN------------S 840
           +LH   +  ++  D+    ++VD K    +++S  G++   ++ S++            S
Sbjct: 121 YLH---NRGIIHRDIKGANILVDNKGG--IKISDFGISKKLEANSLSTKTNGARPSLQGS 175

Query: 841 SAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
             ++APE  +    T K DI+  G +++++LTGK P
Sbjct: 176 VFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHP 211

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 745 RLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVA 804
           ++     S+  +YL+ E+IEG+ L EV    S E +  +A  +A+ L  LH      +  
Sbjct: 57  KVLASGESDGWSYLLMEWIEGETLDEV----SEEEKEDIAEQLAELLAKLHQLPLLVLCH 112

Query: 805 GDVSPGKVIVDGKDEPHL 822
           GD+ PG ++VD      +
Sbjct: 113 GDLHPGNILVDDGKILGI 130

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. Length = 155

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 45.0 bits (106), Expect = 9e-05
 Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 39/225 (17%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGI----AKALRFLH 795
           HPNIVRL GVC  ++  Y+V E ++G +    LR      + K  I +    A  + +L 
Sbjct: 52  HPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLE 111

Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA--------YVAPE 847
                  +  D++    +V  K+   L++S  G++   +     S+         + APE
Sbjct: 112 SKH---CIHRDLAARNCLVTEKNV--LKISDFGMSREEEDGVYASTGGMKQIPVKWTAPE 166

Query: 848 TKESKDITEKGDIYGFGLILIDLLT-GKSP--ADADFGVHESIVEWARYCYSDCHLDTWV 904
                  + + D++ FG++L +  + G  P    ++    E+I +  R    +   D   
Sbjct: 167 ALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIEQGVRLPCPELCPD--- 223

Query: 905 DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES 949
                            +  L   C   DP  RP  S V + L+S
Sbjct: 224 ----------------AVYRLMERCWEYDPGQRPSFSTVHQELQS 252

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 62  HVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNN 121
           ++ +++LS   ++     +   LP+++ ++LS N L+  I  + FS   SLR L+LS NN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 122 F 122
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 44.8 bits (107), Expect = 1e-04
 Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 57/170 (33%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIE-----------GKELSE-VLRNLSWERRRKV 783
           KL  HPNIV+L  V R     Y V+EY+E           GK  SE V+R++ ++     
Sbjct: 53  KLNEHPNIVKLKEVFRENDELYFVFEYMEGNLYQLMKDRKGKPFSESVIRSIIYQ----- 107

Query: 784 AIGIAKALRFLH----FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN 839
              I + L  +H    FH        D+ P  ++V G +   ++++  GLA     + I 
Sbjct: 108 ---ILQGLAHIHKHGFFH-------RDLKPENLLVSGPEV--VKIADFGLA-----REIR 150

Query: 840 SS----AYV------APE-----TKESKDITEKGDIYGFGLILIDLLTGK 874
           S      YV      APE     T  S  +    DI+  G I+ +L T +
Sbjct: 151 SRPPYTDYVSTRWYRAPEILLRSTSYSSPV----DIWALGCIMAELYTLR 196

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 27/154 (17%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALR 792
           K + HPN+V L  V R ++  +LV+EY +   L+E+ +N   +     +K+     +A+ 
Sbjct: 55  KQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVN 114

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHL------RLSVPGLAYCTDSKSINSSAYVAP 846
           F H H   + +  DV P  +++  + +  L      R+        TD        YVA 
Sbjct: 115 FCHKH---NCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDYTD--------YVAT 163

Query: 847 ETKESKDI----TEKG---DIYGFGLILIDLLTG 873
               + ++    T+ G   D++  G +  +LLTG
Sbjct: 164 RWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTG 197

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 13/152 (8%)

Query: 738 IMH----PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKA 790
           IMH    P IV  +G   +E    +  E+++   L  + +    +  E   K+A+ + + 
Sbjct: 56  IMHECRSPYIVSFYGAFLNENNICMCMEFMDCGSLDRIYKKGGPIPVEILGKIAVAVVEG 115

Query: 791 LRFLHF-HCSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPG-LAYCTDSKSINSSAYVAPE 847
           L +L+  H    ++  D+ P  ++V+ + +  L    V G L        + +S Y++PE
Sbjct: 116 LTYLYNVH---RIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADTFVGTSTYMSPE 172

Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSPADA 879
             +    T K D++  G+ +I+L  GK P   
Sbjct: 173 RIQGGKYTVKSDVWSLGISIIELALGKFPFAF 204

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 14/146 (9%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
           HP +  L    ++      V EY  G EL   L   R  + ER R     I  AL +LH 
Sbjct: 54  HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH- 112

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY--CTDSKSIN----SSAYVAPETKE 850
             S  VV  D+    +++D   + H++++  GL     +D  ++     +  Y+APE  E
Sbjct: 113 --SRDVVYRDIKLENLMLD--KDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLE 168

Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
             D     D +G G+++ +++ G+ P
Sbjct: 169 DNDYGRAVDWWGLGVVMYEMMCGRLP 194

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 20/169 (11%)

Query: 720 NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAA-YLVYEYIEGKELSEVLRN---- 774
           N  T  +F  + S   +L  H N+V+L GV   EK   Y+V EY+    L + LR+    
Sbjct: 39  NDATAQAFLAEASVMTQL-RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRS 97

Query: 775 -LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT 833
            L  +   K ++ + +A+ +L    + + V  D++   V+V   ++   ++S  GL    
Sbjct: 98  VLGGDCLLKFSLDVCEAMEYLE---ANNFVHRDLAARNVLV--SEDNVAKVSDFGLT--K 150

Query: 834 DSKSINSSA-----YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
           ++ S   +      + APE    K  + K D++ FG++L ++ + G+ P
Sbjct: 151 EASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP 199

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 181 SLQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNN 239
           +L+   L++N  +  IP      L NLK + L  NNL+   P+    L SL  LDL  NN
Sbjct: 1   NLKSLDLSNN-RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 240 L 240
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 52/217 (23%), Positives = 88/217 (40%), Gaps = 40/217 (18%)

Query: 686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMH----- 740
           E L   GK    S YKV      +   +K+I             D S+F ++IM      
Sbjct: 4   EVLDELGKGNYGSVYKVLHRPTGVTMAMKEI---------RLELDESKFNQIIMELDILH 54

Query: 741 ----PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERR------RKVAIGIAKA 790
               P IV  +G    E A Y+  EY++   L ++               R++   + K 
Sbjct: 55  KAVSPYIVDFYGAFFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKG 114

Query: 791 LRFL---HFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVA 845
           L+FL   H     +++  DV P  V+V+G  +  L    V G    + +K+ I   +Y+A
Sbjct: 115 LKFLKEEH-----NIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAKTNIGCQSYMA 169

Query: 846 PETKESKDITEKG------DIYGFGLILIDLLTGKSP 876
           PE  +S    +        D++  GL ++++  G+ P
Sbjct: 170 PERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYP 206

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 16/139 (11%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLH 795
           HPNIV+L GVC   +  Y+V E + G +    LR     L  ++  K A+  A  + +L 
Sbjct: 51  HPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLE 110

Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA-------YVAPET 848
              S + +  D++    +V   +   L++S  G++   D    +SS        + APE 
Sbjct: 111 ---SKNCIHRDLAARNCLVG--ENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEA 165

Query: 849 KESKDITEKGDIYGFGLIL 867
                 + + D++ +G++L
Sbjct: 166 LNYGRYSSESDVWSYGILL 184

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 50/228 (21%), Positives = 83/228 (36%), Gaps = 45/228 (19%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGI----AKALRFLH 795
           HPNIV+L GVC  ++  Y+V E + G  L   LR        K  + +    A  + +L 
Sbjct: 51  HPNIVKLIGVCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLE 110

Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA--------YVAPE 847
              S + +  D++    +V   +   L++S  G++   +      S         + APE
Sbjct: 111 ---SKNCIHRDLAARNCLVG--ENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPE 165

Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF 907
                  T + D++ +G++L                      W  +   D       +  
Sbjct: 166 ALNYGRYTSESDVWSYGILL----------------------WETFSLGDTPYPGMSNQQ 203

Query: 908 IRGHVSS------IQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES 949
            R  + S       Q    EI  L L C A DP  RP  S++   L+ 
Sbjct: 204 TRERIESGYRMPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQI 251

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 26/162 (16%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYE--------YIEGKELSEVLRNLSWERRRKVAIGI 787
           K + HPNIV+L  V  +E   YLV+E        +++   LS +   L      ++  G+
Sbjct: 54  KELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGL 113

Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------TDSKSINSS 841
           A    F H H    V+  D+ P  ++++   E  ++L+  GLA        T +  + + 
Sbjct: 114 A----FCHSH---RVLHRDLKPQNLLIN--TEGAIKLADFGLARAFGVPVRTYTHEVVTL 164

Query: 842 AYVAPET-KESKDITEKGDIYGFGLILIDLLTGKS--PADAD 880
            Y APE     K  +   DI+  G I  +++T ++  P D++
Sbjct: 165 WYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSE 206

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 36/160 (22%)

Query: 700 YKVRSLANDMQFV-VKKI--------IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVC 750
           YK R L N  +FV +KK+        I ++T+   +    +  F     HPNIVRL  VC
Sbjct: 16  YKARDL-NTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFE----HPNIVRLLDVC 70

Query: 751 -----RSEKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSP 800
                  E    LV+E+++ ++L+  L       L  E  + +   + + + FLH H   
Sbjct: 71  HGPRTDRELKLTLVFEHVD-QDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHR-- 127

Query: 801 SVVAGDVSPGKVIV--DGKDEPHLRLSVPGLA--YCTDSK 836
            +V  D+ P  ++V  DG     ++++  GLA  Y  +  
Sbjct: 128 -IVHRDLKPQNILVTSDG----QVKIADFGLARIYSFEMA 162

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 23/165 (13%)

Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK-------- 789
           + HP IV +    + E   Y + E++ G EL   LR        +    +AK        
Sbjct: 75  LSHPFIVNMMCSFQDENRVYFLLEFVVGGELFTHLRKAG-----RFPNDVAKFYHAELVL 129

Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN---SSAYVAP 846
           A  +LH   S  ++  D+ P  +++D K   H++++  G A     ++     +  Y+AP
Sbjct: 130 AFEYLH---SKDIIYRDLKPENLLLDNKG--HVKVTDFGFAKKVPDRTFTLCGTPEYLAP 184

Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
           E  +SK   +  D +  G++L + + G  P   D  F ++E I+ 
Sbjct: 185 EVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILA 229

Length = 329

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 48/212 (22%), Positives = 92/212 (43%), Gaps = 36/212 (16%)

Query: 702 VRSLANDMQFVVKKIIDVNTITTSS---FWP--DVSQFGKLIMHPNIVRLHGVCRSEKAA 756
           VR  ++   + +K +     I  S    FW   D+  F      P +V+L    + +K  
Sbjct: 62  VRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFAN---SPWVVQLFCAFQDDKYL 118

Query: 757 YLVYEYIEGKELSEVLRNL----SWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKV 812
           Y+V EY+ G +L  ++ N      W +     + +  AL  +H   S  ++  DV P  +
Sbjct: 119 YMVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVL--ALDAIH---SMGLIHRDVKPDNM 173

Query: 813 IVDGKDEPHLRLS---------VPGLAYCTDSKSINSSAYVAPETKESKD----ITEKGD 859
           ++D     HL+L+           G+  C    ++ +  Y++PE  +S+        + D
Sbjct: 174 LLD--KHGHLKLADFGTCMKMDETGMVRC--DTAVGTPDYISPEVLKSQGGDGYYGRECD 229

Query: 860 IYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            +  G+ L ++L G +P  AD+  G +  I++
Sbjct: 230 WWSVGVFLFEMLVGDTPFYADSLVGTYSKIMD 261

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGI---AKALRFL 794
           I HP  V L+G  + E   YLV E++ G E    LR     +R    +G    A+ +   
Sbjct: 88  INHPFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLRR---NKRFPNDVGCFYAAQIVLIF 144

Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN---SSAYVAPETKES 851
            +  S ++V  D+ P  +++D   +  ++++  G A   D+++     +  Y+APE   +
Sbjct: 145 EYLQSLNIVYRDLKPENLLLD--KDGFIKMTDFGFAKVVDTRTYTLCGTPEYIAPEILLN 202

Query: 852 KDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
               +  D +  G+ + ++L G  P  A+    +++ I+E
Sbjct: 203 VGHGKAADWWTLGIFIYEILVGCPPFYANEPLLIYQKILE 242

Length = 340

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 44.3 bits (104), Expect = 2e-04
 Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)

Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFH 797
           P IV  +G   S+    +  E+++G  L +VL+    +  +   KV+I + K L +L   
Sbjct: 63  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE- 121

Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
               ++  DV P  ++V+ + E  L    V G    + + S + + +Y++PE  +    +
Sbjct: 122 -KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYS 180

Query: 856 EKGDIYGFGLILIDLLTGKSP 876
            + DI+  GL L+++  G+ P
Sbjct: 181 VQSDIWSMGLSLVEMAIGRYP 201

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 32/155 (20%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL-RN------------------LSWERR 780
           HPNIV L GVC  E+   +++EY+   +L E L RN                  L     
Sbjct: 67  HPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDF 126

Query: 781 RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTD--- 834
             +AI IA  + +L  H     V  D++    +V   +   +++S  GL+   Y  D   
Sbjct: 127 LHIAIQIAAGMEYLSSH---HFVHRDLAARNCLVG--EGLTVKISDFGLSRDIYSADYYR 181

Query: 835 --SKSINSSAYVAPETKESKDITEKGDIYGFGLIL 867
             SKS+    ++ PE       T + DI+ FG++L
Sbjct: 182 VQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVL 216

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 111 SLRFLNLSNNNFT--GPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVL 168
           +L+ L+LSNN  T         L  L++LDLS N L+   PE       L+ LDL GN L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 49/203 (24%), Positives = 81/203 (39%), Gaps = 26/203 (12%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL-----IMHPNIVRL 746
           G+      +K R L N  +FV  K + V T         + +   L       HPN+VRL
Sbjct: 10  GEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRL 69

Query: 747 HGVCR-----SEKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHF 796
             VC       E    LV+E+++ ++L+  L       +  E  + +   + + L FLH 
Sbjct: 70  FDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS 128

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA-----YVAPETKES 851
           H    VV  D+ P  ++V    +  ++L+  GLA     +   +S      Y APE    
Sbjct: 129 H---RVVHRDLKPQNILVTSSGQ--IKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQ 183

Query: 852 KDITEKGDIYGFGLILIDLLTGK 874
                  D++  G I  ++   K
Sbjct: 184 SSYATPVDLWSVGCIFAEMFRRK 206

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 277 SLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQ 335
           +L S DLS+N L+  IP+   + L NL++L L  NN T   P + + +P L+ L L  N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 336 F 336
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 19/149 (12%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLH 795
           HP +V+L  V        LV EY+   +LSEVLR+    L   + +     + K + ++H
Sbjct: 58  HPYVVKLLDVFPHGSGFVLVMEYM-PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMH 116

Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------SKSINSSAYVAPET 848
              +  ++  D+ P  +++       L+++  GLA           S  + +  Y APE 
Sbjct: 117 ---ANGIMHRDLKPANLLISADG--VLKIADFGLARLFSEEEPRLYSHQVATRWYRAPEL 171

Query: 849 -KESKDITEKGDIYGFGLILIDLLTGKSP 876
              ++      D++  G I  +LL G SP
Sbjct: 172 LYGARKYDPGVDLWAVGCIFAELLNG-SP 199

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 39/179 (21%), Positives = 81/179 (45%), Gaps = 18/179 (10%)

Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG----KE 767
           V  K+I   +++   F  +     KL  H  +V+L+GVC  ++  Y+V EY+        
Sbjct: 31  VAIKMIKEGSMSEDEFIEEAKVMMKL-SHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNY 89

Query: 768 LSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
           L E  +     +  ++   + + + +L    S   +  D++    +VD  D+  +++S  
Sbjct: 90  LREHGKRFQPSQLLEMCKDVCEGMAYLE---SKQFIHRDLAARNCLVD--DQGCVKVSDF 144

Query: 828 GLA-YCTDSKSINSSA------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPAD 878
           GL+ Y  D +  +S        +  PE       + K D++ FG+++ ++ + GK P +
Sbjct: 145 GLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYE 203

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 43.1 bits (101), Expect = 4e-04
 Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 33/209 (15%)

Query: 687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDV---SQFGKLIMHPNI 743
           +L   G     + Y  R + N     +KK+   +   ++  W D+    +F + + HPN 
Sbjct: 19  DLREIGHGSFGAVYFARDVRNSEVVAIKKM-SYSGKQSNEKWQDIIKEVRFLQKLRHPNT 77

Query: 744 VRLHGVCRSEKAAYLVYEYIEG--KELSEVLRNLSWERR-RKVAIGIAKALRFLHFHCSP 800
           ++  G    E  A+LV EY  G   +L EV +    E     V  G  + L +LH H   
Sbjct: 78  IQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH--- 134

Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--SKSINSSA--------YVAPETKE 850
           +++  DV  G ++          LS PGL    D  S SI + A        ++APE   
Sbjct: 135 NMIHRDVKAGNIL----------LSEPGLVKLGDFGSASIMAPANXFVGTPYWMAPEVIL 184

Query: 851 SKDITE---KGDIYGFGLILIDLLTGKSP 876
           + D  +   K D++  G+  I+L   K P
Sbjct: 185 AMDEGQYDGKVDVWSLGITCIELAERKPP 213

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 13/106 (12%)

Query: 782 KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDS--KSI 838
           K+A+ I KAL +LH   S  V+  DV P  V+++      ++L   G++ Y  DS  K+I
Sbjct: 107 KIAVSIVKALEYLHSKLS--VIHRDVKPSNVLIN--RNGQVKLCDFGISGYLVDSVAKTI 162

Query: 839 NSSA--YVAPE----TKESKDITEKGDIYGFGLILIDLLTGKSPAD 878
           ++    Y+APE        K    K D++  G+ +I+L TG+ P D
Sbjct: 163 DAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYD 208

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 516 KLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHF 575
            L SLDLSNN+L+     +   +P L  LDLS N L+   P+    + SL  +++S N+ 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 43.1 bits (101), Expect = 5e-04
 Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 11/147 (7%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL-SWERRRKVAIGIAKALRFL 794
           K + H NIV LH +  +E+   LV+EY++  +L + L N  +      V I + + LR L
Sbjct: 58  KNLKHANIVTLHDIIHTERCLTLVFEYLD-SDLKQYLDNCGNLMSMHNVKIFMFQLLRGL 116

Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET 848
            +     ++  D+ P  ++++ K E  L+L+  GLA        T S  + +  Y  P+ 
Sbjct: 117 SYCHKRKILHRDLKPQNLLINEKGE--LKLADFGLARAKSVPTKTYSNEVVTLWYRPPDV 174

Query: 849 -KESKDITEKGDIYGFGLILIDLLTGK 874
              S + +   D++G G IL ++ TG+
Sbjct: 175 LLGSTEYSTPIDMWGVGCILYEMATGR 201

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 32/151 (21%), Positives = 66/151 (43%), Gaps = 11/151 (7%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCS 799
           HP+I+R+ G    +    L  E++ G  +S +L      +   +     + LR L +   
Sbjct: 62  HPHIIRMLGATCEDSHFNLFVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHE 121

Query: 800 PSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS----------INSSAYVAPETK 849
             ++  DV    +++D   +  LR++  G A    +K           + + A++APE  
Sbjct: 122 NQIIHRDVKGANLLIDSTGQ-RLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVL 180

Query: 850 ESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
             +      D++  G ++I++ T K P +A+
Sbjct: 181 RGEQYGRSCDVWSVGCVIIEMATAKPPWNAE 211

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|133207 cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 37/165 (22%), Positives = 76/165 (46%), Gaps = 28/165 (16%)

Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN------LSWERRRKVAIGIAKAL 791
           + H ++  +HGVC       +V E++E   L   LR       ++W  +  VA  +A AL
Sbjct: 73  VSHIHLAFVHGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAW--KITVAQQLASAL 130

Query: 792 RFLHFHCSPSVVAGDVSPGKVIV------DGKDEPHLRLSVPGLAYCTDSKS--INSSAY 843
            +L      ++V G+V    +++      +G   P ++LS PG+++   S+   +    +
Sbjct: 131 SYLE---DKNLVHGNVCAKNILLARLGLAEGT-SPFIKLSDPGVSFTALSREERVERIPW 186

Query: 844 VAPE-TKESKDITEKGDIYGFGLILIDL-------LTGKSPADAD 880
           +APE       ++   D + FG  L+++       L  ++P++ +
Sbjct: 187 IAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEKE 231

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 274

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 41/211 (19%), Positives = 83/211 (39%), Gaps = 43/211 (20%)

Query: 694 KGVSSS-YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVS---QFGKLIMHPNIVRLHGV 749
            G ++  Y    L N+ +  +K+I   +     +   ++    Q      HPN+V+ +  
Sbjct: 11  VGATAVVYAAICLPNNEKVAIKRI---DLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTS 67

Query: 750 CRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG------IA-------KALRFLHF 796
                  +LV  Y+ G  L ++++            G      IA       K L +LH 
Sbjct: 68  FVVGDELWLVMPYLSGGSLLDIMK-------SSYPRGGLDEAIIATVLKEVLKGLEYLHS 120

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC----TDSKS------INSSAYVAP 846
           +     +  D+  G +++   ++  ++++  G++       D         + +  ++AP
Sbjct: 121 N---GQIHRDIKAGNILLG--EDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAP 175

Query: 847 ETKESKD-ITEKGDIYGFGLILIDLLTGKSP 876
           E  E       K DI+ FG+  I+L TG +P
Sbjct: 176 EVMEQVHGYDFKADIWSFGITAIELATGAAP 206

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 36/176 (20%)

Query: 83  HLPHVESINLSSNQLSGEIPSDI---FSSSNSLRFLNLSNNNFTGP------VPIGSLSR 133
             P +E + L  N+L G     +     ++  L+ LNL+NN             + +   
Sbjct: 135 LPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCN 194

Query: 134 LEILDLSNNML----SGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLAS 189
           LE+LDL+NN L    +  + E + S   L+VL+LG N           N+T      LAS
Sbjct: 195 LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-----------NLTDAGAAALAS 243

Query: 190 NQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKE----IGDLTSLNHLDLVYNNLT 241
             L  +I      L  L    L  N+++ +  K+    + +  SL  LDL  N   
Sbjct: 244 ALLSPNI-----SLLTLS---LSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 55/258 (21%), Positives = 105/258 (40%), Gaps = 64/258 (24%)

Query: 731 VSQFGKL--IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR--------------- 773
           +S+F  L  + HP++++L+G C  +    L+ EY +   L   LR               
Sbjct: 51  LSEFNLLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGN 110

Query: 774 ----NLSWERRRKVAIG--------IAKALRFLHFHCSPSVVAGDVSPGKVIV-DGKDEP 820
                L     R + +G        I++ +++L       +V  D++   V+V +G+   
Sbjct: 111 RNSSYLDNPDERALTMGDLISFAWQISRGMQYL---AEMKLVHRDLAARNVLVAEGRK-- 165

Query: 821 HLRLSVPGL--------AYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT 872
            +++S  GL        +Y   SK      ++A E+      T + D++ FG++L +++T
Sbjct: 166 -MKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVT 224

Query: 873 -GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH-VSSIQNEIVEIMNLALHCT 930
            G +P                  Y     +   +    G+ +   +N   E+ NL L C 
Sbjct: 225 LGGNP------------------YPGIAPERLFNLLKTGYRMERPENCSEEMYNLMLTCW 266

Query: 931 AGDPTARPCASDVTKTLE 948
             +P  RP  +D++K LE
Sbjct: 267 KQEPDKRPTFADISKELE 284

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 42.5 bits (101), Expect = 6e-04
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 13/66 (19%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--------AL 791
           HPNIV+L  V  +E+  YLV+EY +  +L + L      R   ++  + K         L
Sbjct: 57  HPNIVKLLDVIHTERKLYLVFEYCD-MDLKKYLDK----RPGPLSPNLIKSIMYQLLRGL 111

Query: 792 RFLHFH 797
            + H H
Sbjct: 112 AYCHSH 117

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 42.5 bits (100), Expect = 6e-04
 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 20/149 (13%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKEL----SEVLRNLSWERRRKVAIGIAKALRFLH 795
           HP +  L    ++++  + V EY+ G +L        R     R R  A  I   L+FLH
Sbjct: 55  HPFLTHLFCTFQTKEHLFFVMEYLNGGDLMFHIQSSGR-FDEARARFYAAEIICGLQFLH 113

Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA--------YVAPE 847
                 ++  D+    V++D   + H++++  G+  C ++ +    A        Y+APE
Sbjct: 114 ---KKGIIYRDLKLDNVLLD--KDGHIKIADFGM--CKENMNGEGKASTFCGTPDYIAPE 166

Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
             + +   E  D + FG++L ++L G+SP
Sbjct: 167 ILKGQKYNESVDWWSFGVLLYEMLIGQSP 195

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 42.3 bits (100), Expect = 7e-04
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 13/145 (8%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
           HP +V L    + E+  YLV + + G +L          S E+ +     I  AL +LH 
Sbjct: 59  HPFLVNLWYSFQDEENMYLVVDLLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLH- 117

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA----YVAPETKES 851
             S  ++  D+ P  +++D  ++ H+ ++   +A   T      S++    Y+APE    
Sbjct: 118 --SKGIIHRDIKPDNILLD--EQGHVHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLCR 173

Query: 852 KDITEKGDIYGFGLILIDLLTGKSP 876
           +  +   D +  G+   + L GK P
Sbjct: 174 QGYSVAVDWWSLGVTAYECLRGKRP 198

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 60/282 (21%), Positives = 109/282 (38%), Gaps = 66/282 (23%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           GK      Y  R L+  ++  +K+I + ++        +++     + H NIV+  G   
Sbjct: 17  GKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIA-LHSYLKHRNIVQYLGSD- 74

Query: 752 SEKAAYLVY-EYIEGKELSEVLRNLSWE--RRRKVAIG-----IAKALRFLHFHCSPSVV 803
           SE   + ++ E + G  LS +LR+  W   +  +  I      I + L++LH      +V
Sbjct: 75  SENGFFKIFMEQVPGGSLSALLRS-KWGPLKDNEQTIIFYTKQILEGLKYLH---DNQIV 130

Query: 804 AGDVSPGKVIVDGKDEPHLRLS-------VPGLAYCTDSKSINSSAYVAPETKESKDITE 856
             D+    V+V+      +++S       + G+  CT++ +  +  Y+APE      + +
Sbjct: 131 HRDIKGDNVLVNTYSGV-VKISDFGTSKRLAGINPCTETFT-GTLQYMAPE------VID 182

Query: 857 KG--------DIYGFGLILIDLLTGK-------SPADADFGVHESIVEWARYCYSDCHLD 901
           KG        DI+  G  ++++ TGK        P  A F V                  
Sbjct: 183 KGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKVG----------------- 225

Query: 902 TWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
                  + H    ++   E  N  L C   DP  R  A D+
Sbjct: 226 -----MFKIHPEIPESLSAEAKNFILRCFEPDPDKRASAHDL 262

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 42.2 bits (99), Expect = 7e-04
 Identities = 35/151 (23%), Positives = 75/151 (49%), Gaps = 17/151 (11%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLH 795
           HP +V+L+GVC       LV+E++E   LS+ LR      S E    + + + + + +L 
Sbjct: 58  HPKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLE 117

Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA------YVAPET 848
              S +V+  D++    +V   +   +++S  G+  +  D +  +S+       + +PE 
Sbjct: 118 ---SSNVIHRDLAARNCLVG--ENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEV 172

Query: 849 KESKDITEKGDIYGFGLILIDLLT-GKSPAD 878
                 + K D++ FG+++ ++ + GK+P +
Sbjct: 173 FSFSKYSSKSDVWSFGVLMWEVFSEGKTPYE 203

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 42.9 bits (101), Expect = 7e-04
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 17/99 (17%)

Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDT 902
           YVAPE    K  ++K D++  G++L +LLT K P D      E++ E          L  
Sbjct: 211 YVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDG-----ENMEEVMHKT-----LAG 260

Query: 903 WVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCAS 941
             DP       SI  E+ EI+   L   + DP  RP +S
Sbjct: 261 RYDPL----PPSISPEMQEIVTALL---SSDPKRRPSSS 292

Length = 496

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 42.6 bits (100), Expect = 7e-04
 Identities = 35/124 (28%), Positives = 69/124 (55%), Gaps = 12/124 (9%)

Query: 757 YLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV 814
           YLV  ++ G +L +++++  LS +R + +   + K L+++H   +  ++  D+ PG + V
Sbjct: 96  YLVMPFM-GTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIH---AAGIIHRDLKPGNLAV 151

Query: 815 DGKDEPHLRLSVPGLAYCTDSK---SINSSAYVAPETKES-KDITEKGDIYGFGLILIDL 870
           +  ++  L++   GLA  TDS+    + +  Y APE   +    T+  DI+  G I+ ++
Sbjct: 152 N--EDCELKILDFGLARQTDSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEM 209

Query: 871 LTGK 874
           LTGK
Sbjct: 210 LTGK 213

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 37/154 (24%), Positives = 72/154 (46%), Gaps = 18/154 (11%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKA 790
           K + H  +V+L+ VC  E+  Y+V EY+    L + L++     L   +   +A  IA+ 
Sbjct: 56  KKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEG 115

Query: 791 LRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-------YCTDSKSINSSAY 843
           + +L    S + +  D++   ++V   +    +++  GLA       Y     +     +
Sbjct: 116 MAYLE---SRNYIHRDLAARNILVG--ENLVCKIADFGLARLIEDDEYTAREGAKFPIKW 170

Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
            APE       T K D++ FG++L +++T G+ P
Sbjct: 171 TAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVP 204

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 42.3 bits (99), Expect = 7e-04
 Identities = 56/241 (23%), Positives = 94/241 (39%), Gaps = 48/241 (19%)

Query: 724 TSSFWPDV---SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG--KELSEVLRN-LSW 777
           T+  W D+    +F + + HPN +   G    E  A+LV EY  G   +L EV +  L  
Sbjct: 61  TNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYCLGSASDLLEVHKKPLQE 120

Query: 778 ERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--S 835
                +  G  + L +LH H    ++  D+  G ++          L+ PG     D  S
Sbjct: 121 VEIAAITHGALQGLAYLHSHN---MIHRDIKAGNIL----------LTEPGQVKLADFGS 167

Query: 836 KSINSSA--------YVAPETKESKDITE---KGDIYGFGLILIDLLTGKSPADADFGVH 884
            S +S A        ++APE   + D  +   K D++  G+  I+L   K P   +    
Sbjct: 168 ASKSSPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERK-PPLFNMNAM 226

Query: 885 ESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVT 944
            ++   A+        + W D F RG V               +C    P  RP ++++ 
Sbjct: 227 SALYHIAQNDSPTLQSNEWTDSF-RGFVD--------------YCLQKIPQERPASAELL 271

Query: 945 K 945
           +
Sbjct: 272 R 272

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 42.3 bits (99), Expect = 8e-04
 Identities = 38/147 (25%), Positives = 75/147 (51%), Gaps = 11/147 (7%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL-SWERRRKVAIGIAKALRFL 794
           K + H NIV LH +  ++K+  LV+EY++ K+L + + +  +      V I + + LR L
Sbjct: 59  KDLKHANIVTLHDIVHTDKSLTLVFEYLD-KDLKQYMDDCGNIMSMHNVKIFLYQILRGL 117

Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET 848
            +     V+  D+ P  ++++ + E  L+L+  GLA        T S  + +  Y  P+ 
Sbjct: 118 AYCHRRKVLHRDLKPQNLLINERGE--LKLADFGLARAKSVPTKTYSNEVVTLWYRPPDV 175

Query: 849 -KESKDITEKGDIYGFGLILIDLLTGK 874
              S + + + D++G G I  ++ +G+
Sbjct: 176 LLGSSEYSTQIDMWGVGCIFFEMASGR 202

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 41.9 bits (98), Expect = 8e-04
 Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 23/179 (12%)

Query: 710 QFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
           Q V  K I  + +T  +F  + +   KL  H N+VRL GV       Y+V E +    L 
Sbjct: 30  QKVAVKNIKCD-VTAQAFLEETAVMTKL-HHKNLVRLLGVIL-HNGLYIVMELMSKGNLV 86

Query: 770 EVLRNLSWERRRKVAIGIAKALRF-------LHFHCSPSVVAGDVSPGKVIVDGKDEPHL 822
             LR      R +  + + + L+F       + +  S  +V  D++   ++V   ++   
Sbjct: 87  NFLRT-----RGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILV--SEDGVA 139

Query: 823 RLSVPGLAYCTDSKSINSS----AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
           ++S  GLA    S  +++S     + APE  + K  + K D++ +G++L ++ + G++P
Sbjct: 140 KVSDFGLAR-VGSMGVDNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAP 197

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 42.3 bits (99), Expect = 8e-04
 Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 14/149 (9%)

Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKV---AIGIAKALRFLHFH 797
           P + +LH   ++    Y V EY+ G +L   ++ +   +       A  IA  L FLH  
Sbjct: 61  PFLTQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLH-- 118

Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKES 851
            S  ++  D+    V++D   E H++++  G+         T      +  Y+APE    
Sbjct: 119 -SKGIIYRDLKLDNVMLDS--EGHIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAY 175

Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   +  D + FG++L ++L G++P + +
Sbjct: 176 QPYGKSVDWWAFGVLLYEMLAGQAPFEGE 204

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 21/60 (35%), Positives = 27/60 (45%)

Query: 325 KLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSL 384
            L+ L L +N+ +           NL V+DLS N LT   PE      SL  L L  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 21/60 (35%), Positives = 26/60 (43%)

Query: 349 NLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRL 408
           NL  +DLS N LT           +L  L L  N+L    P + S   SLR + L  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 13/146 (8%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
           HP +  L    ++      V EY  G EL   L   R  S +R R     I  AL +LH 
Sbjct: 54  HPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLH- 112

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKE 850
               +VV  D+    +++D KD  H++++  GL         T      +  Y+APE  E
Sbjct: 113 -SEKNVVYRDLKLENLMLD-KDG-HIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLE 169

Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
             D     D +G G+++ +++ G+ P
Sbjct: 170 DNDYGRAVDWWGLGVVMYEMMCGRLP 195

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 53/264 (20%), Positives = 97/264 (36%), Gaps = 38/264 (14%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFG--KLIMHPNIVRLHGV 749
           G+   S  Y+   L +     +KK+     +   +    V +    K + HPN+++    
Sbjct: 11  GRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDS 70

Query: 750 CRSEKAAYLVYEYIEGKELSEVLRNLSWERRR-------KVAIGIAKALRFLHFHCSPSV 802
              +    +V E  +  +LS++++    ++R        K  + +  A+  +H   S  V
Sbjct: 71  FIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMH---SRRV 127

Query: 803 VAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS------INSSAYVAPETKESKDITE 856
           +  D+ P  V +       ++L   GL     SK+      + +  Y++PE         
Sbjct: 128 MHRDIKPANVFITATGV--VKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNF 185

Query: 857 KGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVD--PFIRGHVSS 914
           K DI+  G +L ++   +SP   D              +S C      D  P    H S 
Sbjct: 186 KSDIWSLGCLLYEMAALQSPFYGD----------KMNLFSLCQKIEQCDYPPLPTEHYSE 235

Query: 915 IQNEIVEIMNLALHCTAGDPTARP 938
              E+V +      C   DP  RP
Sbjct: 236 KLRELVSM------CIYPDPDQRP 253

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 10/99 (10%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVA----IGIAKAL 791
           K + H NIVRL+ V  S+K   LV+EY + ++L +   + + +   ++       + K L
Sbjct: 54  KELKHKNIVRLYDVLHSDKKLTLVFEYCD-QDLKKYFDSCNGDIDPEIVKSFMFQLLKGL 112

Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA 830
            F H H   +V+  D+ P  ++++   E  L+L+  GLA
Sbjct: 113 AFCHSH---NVLHRDLKPQNLLINKNGE--LKLADFGLA 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 19/188 (10%)

Query: 700 YKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL 758
           YK R+        +K+I +D    T S+   ++S   +L  H NIVRLH V  +E    L
Sbjct: 17  YKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKEL-KHENIVRLHDVIHTENKLML 75

Query: 759 VYEYIEGK-----ELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
           V+EY++       +   V   L     +     + K + F H +    V+  D+ P  ++
Sbjct: 76  VFEYMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHEN---RVLHRDLKPQNLL 132

Query: 814 VDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET-KESKDITEKGDIYGFGLI 866
           ++ + E  L+L+  GLA        T S  + +  Y AP+    S+  +   DI+  G I
Sbjct: 133 INKRGE--LKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCI 190

Query: 867 LIDLLTGK 874
           + +++TG+
Sbjct: 191 MAEMITGR 198

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 42/197 (21%), Positives = 76/197 (38%), Gaps = 37/197 (18%)

Query: 709 MQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL 768
           M   VK + + +      F  + ++   ++ H +IVR +GVC   +   +V+EY+   +L
Sbjct: 36  MLVAVKALKEASESARQDFQRE-AELLTVLQHQHIVRFYGVCTEGRPLLMVFEYMRHGDL 94

Query: 769 SEVLRNLS-----WERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR 823
           +  LR+             VA G     + L        +A  ++ G V +      H  
Sbjct: 95  NRFLRSHGPDAKILAGGEDVAPGQLTLGQMLA-------IASQIASGMVYLASLHFVHRD 147

Query: 824 LSVPGLAYCTD----------SKSINSSAY-------------VAPETKESKDITEKGDI 860
           L+                   S+ I S+ Y             + PE+   +  T + DI
Sbjct: 148 LATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDI 207

Query: 861 YGFGLILIDLLT-GKSP 876
           + FG++L ++ T GK P
Sbjct: 208 WSFGVVLWEIFTYGKQP 224

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 23/60 (38%), Positives = 29/60 (48%)

Query: 253 NLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNF 312
           NL+ L L  N+LT     +  GL +L   DLS N L+   PE    L +L  L L  NN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 24/60 (40%), Positives = 30/60 (50%)

Query: 133 RLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQL 192
            L+ LDLSNN L+            LKVLDL GN L    P + S + SL+   L+ N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 21/160 (13%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIE---GKELS---EVLRNLSWERRRKVAIGIAK 789
           K + H NIVRL  V  SEK  YLV+EY++    K +    +  +N      R +   + +
Sbjct: 56  KEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPDFAKNP-----RLIKTYLYQ 110

Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------TDSKSINSSAY 843
            LR + +  S  V+  D+ P  +++D +    L+L+  GLA        T +  + +  Y
Sbjct: 111 ILRGIAYCHSHRVLHRDLKPQNLLIDRRTNA-LKLADFGLARAFGIPVRTFTHEVVTLWY 169

Query: 844 VAPET-KESKDITEKGDIYGFGLILIDLLTGKS--PADAD 880
            APE    S+  +   DI+  G I  +++  K   P D++
Sbjct: 170 RAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSE 209

Length = 294

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 40/156 (25%), Positives = 78/156 (50%), Gaps = 25/156 (16%)

Query: 737 LIM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR--NLSWERRRKVAIGIAKA 790
           +IM    HPNIV ++         ++V E++EG  L++++    ++ E+   V + + KA
Sbjct: 68  VIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLAVLKA 127

Query: 791 LRFLHFHCSPSVVAGDVSPGKVIV--DGKDEPHLRLSVPGLAYCTD-------SKSINSS 841
           L FLH   +  V+  D+    +++  DG+    ++LS  G  +C          KS+  +
Sbjct: 128 LSFLH---AQGVIHRDIKSDSILLTSDGR----VKLSDFG--FCAQVSKEVPRRKSLVGT 178

Query: 842 AY-VAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
            Y +APE         + DI+  G+++I+++ G+ P
Sbjct: 179 PYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPP 214

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 47/218 (21%), Positives = 87/218 (39%), Gaps = 44/218 (20%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           GK  ++  Y +    + M   VK + D        F  +      L  H +IV+ +GVC 
Sbjct: 19  GKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNL-QHEHIVKFYGVCG 77

Query: 752 SEKAAYLVYEYIEGKELSEVLRNLSWE---------RRRKVAIGIAKALRFLHFHCSPSV 802
                 +V+EY++  +L++ LR    +         R+ K  +G+++ L           
Sbjct: 78  DGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLH---------- 127

Query: 803 VAGDVSPGKVIVDGKDEPHLRLSVPG-------LAYCTD---SKSINSSAY--------- 843
           +A  ++ G V +  +   H  L+          L    D   S+ + S+ Y         
Sbjct: 128 IASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTML 187

Query: 844 ----VAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
               + PE+   +  T + D++ FG+IL ++ T GK P
Sbjct: 188 PIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQP 225

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 55/231 (23%), Positives = 92/231 (39%), Gaps = 62/231 (26%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----------LSWERRRKVAIGIAK 789
           HPNIV+L GVC   +  Y++ E +EG +L   LR+          L+ +    + + +AK
Sbjct: 58  HPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAK 117

Query: 790 ALRFL---HFHCSPSVVAGDVSPGKVIVDGKDEPHLR---LSVPGLAYCTDSKSINSSAY 843
              +L   HF      +  D++    +V  K     R   +   GLA     + I  S Y
Sbjct: 118 GCVYLEQMHF------IHRDLAARNCLVSEKGYDADRVVKIGDFGLA-----RDIYKSDY 166

Query: 844 -------------VAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVE 889
                        +APE+      T + D++ FG+++ ++LT G+ P  A          
Sbjct: 167 YRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPA---------- 216

Query: 890 WARYCYSDCHLDTWVDPFIR--GHVSSIQNEIVEIMNLALHCTAGDPTARP 938
                      +  V   +   G +   +N   +I  L  +C A DP+ RP
Sbjct: 217 ---------LNNQEVLQHVTAGGRLQKPENCPDKIYQLMTNCWAQDPSERP 258

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 36.7 bits (86), Expect = 0.002
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 111 SLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLS 145
           +L  L+LSNN  T   P+ +L  LE LDLS N ++
Sbjct: 2   NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 52/226 (23%), Positives = 91/226 (40%), Gaps = 53/226 (23%)

Query: 713 VKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
           +K + D+N       W +  Q   L+    HPNIV L GV   E+   +++EY+   +L 
Sbjct: 39  IKTLKDINN---PQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQGDLH 95

Query: 770 EVL--------------------RNLSWERRRKVAIGIAKALRFL--HFHCSPSVVAGDV 807
           E L                     +L       +AI IA  + +L  HF     + A ++
Sbjct: 96  EFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNI 155

Query: 808 SPGKVIVDGKDEPHLRLSVPGLA--------YCTDSKSINSSAYVAPETKESKDITEKGD 859
             G       ++ H+++S  GL+        Y    KS+    ++ PE       +   D
Sbjct: 156 LIG-------EQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSD 208

Query: 860 IYGFGLILIDLLT-GKSPADADFGV-HESIVEWARY-----CYSDC 898
           I+ FG++L ++ + G  P    +G  ++ ++E  R      C  DC
Sbjct: 209 IWSFGVVLWEIFSFGLQPY---YGFSNQEVIEMVRKRQLLPCSEDC 251

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 710 QFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL 768
              VK +  D +      F  +V    +L   PNI RL GVC  +    ++ EY+E  +L
Sbjct: 48  LVAVKVLRPDASDNAREDFLKEVKILSRL-SDPNIARLLGVCTVDPPLCMIMEYMENGDL 106

Query: 769 SEVLR 773
           ++ L+
Sbjct: 107 NQFLQ 111

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 19/163 (11%)

Query: 739 MHPNIVRLHGVCRSEKAAYLVYEYIEGKEL-SEVLRNLSWERRRKV-AIGIAKALRFLHF 796
            HP +V L    ++E     V EY  G +L   +  ++  E R    A  +   L++LH 
Sbjct: 60  RHPFLVNLFACFQTEDHVCFVMEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLHE 119

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC--------TDSKSINSSAYVAPET 848
           +    +V  D+    +++D   E  ++++  GL  C          S    +  ++APE 
Sbjct: 120 N---KIVYRDLKLDNLLLD--TEGFVKIADFGL--CKEGMGFGDRTSTFCGTPEFLAPEV 172

Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
                 T   D +G G+++ ++L G+SP   D +  V +SIV 
Sbjct: 173 LTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIVN 215

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 32/149 (21%), Positives = 72/149 (48%), Gaps = 21/149 (14%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFH 797
           H N+V ++         ++V E++EG  L++++ +  ++ E+   V + + +AL +LH  
Sbjct: 78  HENVVDMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLH-- 135

Query: 798 CSPSVVAGDVSPGKVIV--DGKDEPHLRLSVPGLAYCTD-------SKSINSSAY-VAPE 847
            +  V+  D+    +++  DG      R+ +    +C          KS+  + Y +APE
Sbjct: 136 -NQGVIHRDIKSDSILLTSDG------RIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPE 188

Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
                    + DI+  G+++I+++ G+ P
Sbjct: 189 VISRLPYGTEVDIWSLGIMVIEMIDGEPP 217

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 21/152 (13%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAI----GIAKALRFLH 795
           H NI+RL GV    K A ++ EY+E   L + LR+   E      +    GIA  +++L 
Sbjct: 65  HHNIIRLEGVVTKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYL- 123

Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----------YCTDSKSINSSAYVA 845
                + V  D++   ++V+   E   ++S  GL+          Y T    I    + A
Sbjct: 124 --SDMNYVHRDLAARNILVNSNLE--CKVSDFGLSRVLEDDPEGTYTTSGGKI-PIRWTA 178

Query: 846 PETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
           PE    +  T   D++ FG+++ ++++ G+ P
Sbjct: 179 PEAIAYRKFTSASDVWSFGIVMWEVMSFGERP 210

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 33/149 (22%), Positives = 71/149 (47%), Gaps = 21/149 (14%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFH 797
           H N+V ++         ++V E++EG  L++++ +  ++ E+   V + + KAL  LH  
Sbjct: 76  HENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLKALSVLH-- 133

Query: 798 CSPSVVAGDVSPGKVIV--DGKDEPHLRLSVPGLAYCTD-------SKSINSSAY-VAPE 847
            +  V+  D+    +++  DG      R+ +    +C          KS+  + Y +APE
Sbjct: 134 -AQGVIHRDIKSDSILLTHDG------RVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPE 186

Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
                    + DI+  G+++I+++ G+ P
Sbjct: 187 LISRLPYGPEVDIWSLGIMVIEMVDGEPP 215

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 43/168 (25%), Positives = 68/168 (40%), Gaps = 32/168 (19%)

Query: 728 WPDV---SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK--ELSEVLRN-LSWERRR 781
           W D+    +F + + HPN +   G    E  A+LV EY  G   ++ EV +  L      
Sbjct: 59  WQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVMEYCLGSASDILEVHKKPLQEVEIA 118

Query: 782 KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--SKSIN 839
            +  G  + L +LH H     +  D+  G ++          L+ PG     D  S S+ 
Sbjct: 119 AICHGALQGLAYLHSHER---IHRDIKAGNIL----------LTEPGTVKLADFGSASLV 165

Query: 840 SSA--------YVAPETKESKD---ITEKGDIYGFGLILIDLLTGKSP 876
           S A        ++APE   + D      K D++  G+  I+L   K P
Sbjct: 166 SPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPP 213

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 59/234 (25%), Positives = 113/234 (48%), Gaps = 32/234 (13%)

Query: 136 ILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGS 195
           ILD +N + S  +PE +     +K L    N L   IP ++ +  ++Q   L+ N++   
Sbjct: 205 ILD-NNELKS--LPENLQG--NIKTLYANSNQLT-SIPATLPD--TIQEMELSINRIT-E 255

Query: 196 IPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLR 255
           +P  +     L+ + L +N +S  +P+ + +   L +L +  N++   +P      S + 
Sbjct: 256 LPERLPSA--LQSLDLFHNKISC-LPENLPE--ELRYLSVYDNSIRT-LPAHLP--SGIT 307

Query: 256 YLFLYQNKLTGSIPKSI-LGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTG 314
           +L +  N LT ++P+++  GLK+L + + +   L   +P E   LQ L++    S N   
Sbjct: 308 HLNVQSNSLT-ALPETLPPGLKTLEAGENALTSLPASLPPE---LQVLDV----SKNQIT 359

Query: 315 KIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETL 368
            +P +L   P +  L +  N  +  +P NL     L ++  S N L  ++PE+L
Sbjct: 360 VLPETLP--PTITTLDVSRNALT-NLPENLPAA--LQIMQASRNNLV-RLPESL 407

Length = 754

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 15/144 (10%)

Query: 743 IVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS---WERRRKV--AIGIAKALRFLHFH 797
           +V L     ++ A  LV   + G +L   + N+    +E  R +  A  I   L  LH  
Sbjct: 62  VVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLH-- 119

Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY-CTDSKSI----NSSAYVAPETKESK 852
              + V  D+ P  +++D  D  H+R+S  GLA    + +SI     +  Y+APE   ++
Sbjct: 120 -RENTVYRDLKPENILLD--DYGHIRISDLGLAVKIPEGESIRGRVGTVGYMAPEVLNNQ 176

Query: 853 DITEKGDIYGFGLILIDLLTGKSP 876
             T   D +G G ++ +++ G+SP
Sbjct: 177 RYTLSPDYWGLGCLIYEMIEGQSP 200

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 493 LMQLKISRNKLFGDIPEE-LSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQL 551
           L  L +S N+L   IP+        L  LDLS N L+   P + S +P L  LDLS N L
Sbjct: 2   LKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 37/163 (22%)

Query: 737 LIM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIA 788
           LIM    HPNIV  +         ++V EY++G  L++++      ++  +   V   + 
Sbjct: 67  LIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVL 126

Query: 789 KALRFLH-FHC------SPSVVAGDVSPGKV-IVD-------GKDEPHLRLSVPGLAYCT 833
           + L +LH  +       S +++      G V + D        K++   R SV G  Y  
Sbjct: 127 QGLEYLHSQNVIHRDIKSDNILLS--KDGSVKLADFGFAAQLTKEKSK-RNSVVGTPY-- 181

Query: 834 DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
                    ++APE  + KD   K DI+  G++ I++  G+ P
Sbjct: 182 ---------WMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPP 215

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 14/146 (9%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
           HP +  L+   ++++  + V EY+ G +L    +        R    A  I   L+FLH 
Sbjct: 55  HPFLTHLYCTFQTKENLFFVMEYLNGGDLMFHIQSCHKFDLPRATFYAAEIICGLQFLH- 113

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL---AYCTDSKS---INSSAYVAPETKE 850
             S  +V  D+    +++D   + H++++  G+       D+K+     +  Y+APE   
Sbjct: 114 --SKGIVYRDLKLDNILLD--TDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILL 169

Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
            +      D + FG++L ++L G+SP
Sbjct: 170 GQKYNTSVDWWSFGVLLYEMLIGQSP 195

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 16/147 (10%)

Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL--RNLSWERRRKVAIG-IAKALRFLHFH 797
           P +V LH   ++E   +L+ +Y+ G E+   L  R+   E   +   G I  AL  LH  
Sbjct: 65  PFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLH-- 122

Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--YCTDSKSINSS-----AYVAPETKE 850
               +V  D+    +++D   E H+ L+  GL+  + ++ K    S      Y+APE   
Sbjct: 123 -KLGIVYRDIKLENILLD--SEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIR 179

Query: 851 SKDITEKG-DIYGFGLILIDLLTGKSP 876
            K    K  D +  G+++ +LLTG SP
Sbjct: 180 GKGGHGKAVDWWSLGILIFELLTGASP 206

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 45/169 (26%), Positives = 86/169 (50%), Gaps = 27/169 (15%)

Query: 730 DVSQFGK--LIM----HPNIVRLHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRK 782
           +V QF K  +IM    HPN++ L G+C  SE +  +V  Y++  +L   +R+ +     K
Sbjct: 39  EVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFIRSETHNPTVK 98

Query: 783 VAIG----IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDS 835
             IG    +AK + +L    S   V  D++    ++D  +   ++++  GLA   Y  + 
Sbjct: 99  DLIGFGLQVAKGMEYL---ASKKFVHRDLAARNCMLD--ESFTVKVADFGLARDIYDKEY 153

Query: 836 KSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
            S+++         ++A E+ +++  T K D++ FG++L +L+T G  P
Sbjct: 154 YSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPP 202

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 39.8 bits (94), Expect = 0.004
 Identities = 36/157 (22%), Positives = 74/157 (47%), Gaps = 28/157 (17%)

Query: 736 KLIMHPNIVRLHGVCRSEKAA--YLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAK 789
           + + HPNIVRL  +  S+     Y+V+EY++  +L+ +L +     +  + +     + +
Sbjct: 53  QKLRHPNIVRLKEIVTSKGKGSIYMVFEYMD-HDLTGLLDSPEVKFTESQIKCYMKQLLE 111

Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--YCTDSKSINSSA----- 842
            L++LH   S  ++  D+    ++++      L+L+  GLA  Y   + +  ++      
Sbjct: 112 GLQYLH---SNGILHRDIKGSNILINNDGV--LKLADFGLARPYTKRNSADYTNRVITLW 166

Query: 843 YVAPE-----TKESKDITEKGDIYGFGLILIDLLTGK 874
           Y  PE     T+   ++    D++  G IL +L  GK
Sbjct: 167 YRPPELLLGATRYGPEV----DMWSVGCILAELFLGK 199

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	966
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.98
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.98
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.98
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.98
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.98
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.98
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.98
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.98
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.98
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.98
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.98
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.98
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.98
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.98
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.98
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.98
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.98
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.98
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.98
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.98
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.98
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.98
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.98
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.98
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.98
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.98
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.98
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.98
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.98
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.98
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.98
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.98
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.98
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.98
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.98
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.98
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.98
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.98
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.98
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.98
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.98
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.98
PHA03211	461	serine/threonine kinase US3; Provisional	99.98
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.98
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.98
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.98
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.98
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.98
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.97
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.97
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.97
PHA03209	357	serine/threonine kinase US3; Provisional	99.97
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.97
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.97
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.97
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.97
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.97
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.97
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.97
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.97
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.97
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.97
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.97
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.97
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.97
PTZ00284	467	protein kinase; Provisional	99.97
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.97
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.97
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.97
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.97
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.97
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.97
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.97
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.97
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.97
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.97
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.97
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.97
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.97
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.97
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.97
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.97
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.97
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.97
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.97
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.97
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.97
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.97
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.97
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.97
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.97
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.97
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.97
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.97
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.97
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.97
PHA03207	392	serine/threonine kinase US3; Provisional	99.97
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.97
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.97
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.97
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.97
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.97
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.97
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.97
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.97
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.97
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.97
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.97
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.97
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.97
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.97
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.97
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.97
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.97
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.97
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.97
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.97
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.97
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.97
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.97
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.97
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.97
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.97
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.97
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.97
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.97
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.97
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.97
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.97
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.97
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.97
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.97
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.97
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.97
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.97
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.97
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.97
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.97
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.97
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.97
KOG0610	459	consensus Putative serine/threonine protein kinase	99.97
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.97
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.97
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.97
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.97
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.97
PLN00009	294	cyclin-dependent kinase A; Provisional	99.97
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.97
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.97
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.97
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.97
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.97
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.97
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.97
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.97
PHA02882	294	putative serine/threonine kinase; Provisional	99.97
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.96
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.96
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.96
KOG0586	596	consensus Serine/threonine protein kinase [General	99.96
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.96
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.96
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.96
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.96
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.96
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.96
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.96
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.96
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.96
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.96
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.96
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.96
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.96
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.96
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.96
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.96
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.96
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.96
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.96
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.96
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.96
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.96
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.96
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.96
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.96
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.96
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.96
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.96
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.96
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.96
PHA03210	501	serine/threonine kinase US3; Provisional	99.96
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.96
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.96
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.96
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.96
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.96
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.96
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.96
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.95
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.95
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.95
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.95
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.95
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.95
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.95
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.95
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.95
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.94
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.93
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.93
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.93
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.93
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.92
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.92
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.92
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.92
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.92
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN00181	793	protein SPA1-RELATED; Provisional	99.9
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.9
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.9
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.9
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.9
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.89
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.89
KOG1152	772	consensus Signal transduction serine/threonine kin	99.89
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.86
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.84
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
PRK09188	365	serine/threonine protein kinase; Provisional	99.78
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.77
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.73
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.68
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.65
PRK10345	210	hypothetical protein; Provisional	99.65
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.64
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.62
PRK12274	218	serine/threonine protein kinase; Provisional	99.62
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.57
PLN03150	623	hypothetical protein; Provisional	99.57
PRK14879	211	serine/threonine protein kinase; Provisional	99.54
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.53
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.52
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.51
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.49
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.44
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.44
smart00090	237	RIO RIO-like kinase.	99.44
PLN03150	623	hypothetical protein; Provisional	99.43
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.43
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.4
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.39
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.38
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.36
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.35
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.3
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.3
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.27
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.17
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.15
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.97
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.95
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.94
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.93
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.91
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.9
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.9
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.9
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.87
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.84
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.84
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.83
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.8
KOG1243	690	consensus Protein kinase [General function predict	98.79
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.77
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.76
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.73
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.7
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.63
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.63
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.57
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.53
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.51
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.44
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.34
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.23
KOG3087	229	consensus Serine/threonine protein kinase [General	98.15
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.14
COG4248	637	Uncharacterized protein with protein kinase and he	98.12
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.12
PRK09902	216	hypothetical protein; Provisional	98.03
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	97.99
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.96
KOG2137	700	consensus Protein kinase [Signal transduction mech	97.94
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.93
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.93
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.93

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.5e-130  Score=1246.61  Aligned_cols=942  Identities=73%  Similarity=1.170  Sum_probs=840.2

Q ss_pred             cCCcHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCccccccccccCCCCCCEEEcCCC
Q 002105           16 CTCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSN   95 (966)
Q Consensus        16 ~~~~~~~~~~Ll~~k~~~~~~~~~l~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N   95 (966)
                      |.-++.|++||++||+++.+|.+.+.+|+...+||.|.||+|++.++|+.|||++++++|.++++|..+++|++|+|++|
T Consensus        24 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n  103 (968)
T PLN00113         24 SMLHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN  103 (968)
T ss_pred             cCCCHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC
Confidence            44578999999999999988888889998777999999999998889999999999999999999999999999999999


Q ss_pred             CCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcC
Q 002105           96 QLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLS  175 (966)
Q Consensus        96 ~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  175 (966)
                      +++|.+|..++..+++|++|+|++|++++.+|.+.+++|++|+|++|.+++.+|..++++++|++|+|++|.+.+.+|..
T Consensus       104 ~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  183 (968)
T PLN00113        104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS  183 (968)
T ss_pred             ccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh
Confidence            99999999999888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccc
Q 002105          176 ISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLR  255 (966)
Q Consensus       176 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  255 (966)
                      ++++++|++|++++|.+.+.+|..++++++|++|+|++|.+++.+|..++++++|++|++++|++++.+|..++++++|+
T Consensus       184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  263 (968)
T PLN00113        184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ  263 (968)
T ss_pred             hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCc
Q 002105          256 YLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQ  335 (966)
Q Consensus       256 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~  335 (966)
                      +|++++|++.+.+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.
T Consensus       264 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  343 (968)
T PLN00113        264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK  343 (968)
T ss_pred             EEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChh
Q 002105          336 FSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSE  415 (966)
Q Consensus       336 l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~  415 (966)
                      +.+.+|..++.+++|+.|++++|.+++.+|..++.+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..
T Consensus       344 l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~  423 (968)
T PLN00113        344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE  423 (968)
T ss_pred             CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCccCCCCcCcccccccccccccccccCCCcccCcCCCCE
Q 002105          416 FTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQ  495 (966)
Q Consensus       416 ~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  495 (966)
                      |..++.|++||+++|.+++.++..++.+++|+.|+|++|++.+.+|..+...+|+.|++++|++++.+|..|..+++|+.
T Consensus       424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~  503 (968)
T PLN00113        424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQ  503 (968)
T ss_pred             HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCE
Confidence            99999999999999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             EEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCcc
Q 002105          496 LKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHF  575 (966)
Q Consensus       496 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l  575 (966)
                      |+|++|++.+.+|..+..+++|++|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+..+++|+.+++++|++
T Consensus       504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l  583 (968)
T PLN00113        504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL  583 (968)
T ss_pred             EECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCccCCCccccccCC-CCCCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 002105          576 HGSLPSTGAFLAINATAVAGN-DLCGGDSTSGLPPCKGNKKNQTWWLVVACFLAVLIMLALAAFAITVIRGKKILELKRV  654 (966)
Q Consensus       576 ~g~ip~~~~~~~~~~~~~~gn-~lcg~~~~~~~~~~~~~~~~~~~~~iv~i~~~~~ivl~l~~~~~~~~~~~~~~~~~~~  654 (966)
                      +|.+|..+++.++.+.++.|| .+||+.+..+.++|...++...++.++++++++++++++++++++++|+++..+.++.
T Consensus       584 ~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (968)
T PLN00113        584 HGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRV  663 (968)
T ss_pred             eeeCCCcchhcccChhhhcCCccccCCccccCCCCCccccccceeeeehhHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence            999999999999999999999 8998754444445533323333334444444444444444444444444332222233


Q ss_pred             ccCCCcceEeeecccccccccHHHHHhhccccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHH
Q 002105          655 ENEDGIWEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF  734 (966)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~  734 (966)
                      +.+.+.|+...+.......++++++..+......  +|+|++|.||+|+...++..||||++.....    ....|++.+
T Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~----~~~~~~~~l  737 (968)
T PLN00113        664 ENEDGTWELQFFDSKVSKSITINDILSSLKEENV--ISRGKKGASYKGKSIKNGMQFVVKEINDVNS----IPSSEIADM  737 (968)
T ss_pred             ccccccccccccccccchhhhHHHHHhhCCcccE--EccCCCeeEEEEEECCCCcEEEEEEccCCcc----ccHHHHHHH
Confidence            3334446655555444456777888777665444  5788888999999988999999998864332    223456666


Q ss_pred             HhhcCCCceeEEeeEEecCCeeEEEEEccCCCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEE
Q 002105          735 GKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV  814 (966)
Q Consensus       735 ~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill  814 (966)
                      .+ ++|||||+++|+|.+++..|+|||||++|+|.++++.++|.++.+|+.|||+||+|||++++++|+||||||+||++
T Consensus       738 ~~-l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~  816 (968)
T PLN00113        738 GK-LQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRNLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIII  816 (968)
T ss_pred             hh-CCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEE
Confidence            66 69999999999999999999999999999999999999999999999999999999998888999999999999999


Q ss_pred             cCCCCceEEEeccccceecCCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHh
Q 002105          815 DGKDEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYC  894 (966)
Q Consensus       815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~  894 (966)
                      |++..+++.++.++... .+....+|++|||||++.+..++.|+|||||||++|||+||+.|++..++....+.+|++..
T Consensus       817 ~~~~~~~~~~~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~  895 (968)
T PLN00113        817 DGKDEPHLRLSLPGLLC-TDTKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYC  895 (968)
T ss_pred             CCCCceEEEeccccccc-cCCCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHh
Confidence            98888777766555432 23344678999999999999999999999999999999999999987666666677898887


Q ss_pred             hccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc-CCcCCCCccCCC
Q 002105          895 YSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI-SSCVSGLKFSSP  965 (966)
Q Consensus       895 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~-~~~~~~~~~~~~  965 (966)
                      +.+.....++||.+........+++.++++++.+||+.||++||||+||+++|++..+. +++.+.++|.|+
T Consensus       896 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L~~~~~~~~~~~~~~~~~~~  967 (968)
T PLN00113        896 YSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESASRSSSSCVTGLKFSSL  967 (968)
T ss_pred             cCccchhheeCccccCCCCccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHHHHHhhccccccccCcccccc
Confidence            77666777788887665444467788899999999999999999999999999996664 478888998876

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.4e-61  Score=617.37  Aligned_cols=509  Identities=38%  Similarity=0.606  Sum_probs=481.7

Q ss_pred             CCEEEEEcCCCCcccccccccc-CCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCC--CCCCCCCcEE
Q 002105           61 THVNAIELSAKNISGKISSSIF-HLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--IGSLSRLEIL  137 (966)
Q Consensus        61 ~~v~~L~L~~~~l~~~~~~~~~-~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L  137 (966)
                      ++++.|+|++|.++|.+|..++ .+++|++|||++|+++|.+|..   .+++|++|+|++|.+++..|  ++.+++|++|
T Consensus        93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~---~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L  169 (968)
T PLN00113         93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG---SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL  169 (968)
T ss_pred             CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc---ccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence            4788999999999999998766 9999999999999999988863   45899999999999998666  5899999999


Q ss_pred             eCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCC
Q 002105          138 DLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLS  217 (966)
Q Consensus       138 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~  217 (966)
                      ||++|.+.+.+|..++++++|++|+|++|.+.+.+|..++++++|++|++++|++.+.+|..++++++|++|++++|.++
T Consensus       170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  249 (968)
T PLN00113        170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT  249 (968)
T ss_pred             ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhc
Q 002105          218 GEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVI  297 (966)
Q Consensus       218 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  297 (966)
                      +.+|..++++++|++|++++|.+.+.+|.++.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+++.+|..+.
T Consensus       250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~  329 (968)
T PLN00113        250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT  329 (968)
T ss_pred             cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEE
Q 002105          298 QLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKL  377 (966)
Q Consensus       298 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L  377 (966)
                      .+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..+.+|+.|++++|.+.+.+|..+..+++|+.|
T Consensus       330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L  409 (968)
T PLN00113        330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV  409 (968)
T ss_pred             cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCC
Q 002105          378 ILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFS  457 (966)
Q Consensus       378 ~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  457 (966)
                      ++++|++++.+|..+..+++|+.|++++|++++.++..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|+++
T Consensus       410 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~  488 (968)
T PLN00113        410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFS  488 (968)
T ss_pred             ECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccC
Confidence            999999999999999999999999999999999999999999999999999999999888765 4689999999999999


Q ss_pred             ccCCC-CcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCC
Q 002105          458 GKLPD-SFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLS  536 (966)
Q Consensus       458 ~~~p~-~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  536 (966)
                      +..|. +..+++|+.|+|++|++++.+|..+..+++|+.|+|++|.++|.+|..+..+++|+.|+|++|+++|.+|..+.
T Consensus       489 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  568 (968)
T PLN00113        489 GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG  568 (968)
T ss_pred             CccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHh
Confidence            99988 45678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCc
Q 002105          537 EMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNH  574 (966)
Q Consensus       537 ~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~  574 (966)
                      .++.|+.|++++|+++|.+|.. +.+..+....+.+|+
T Consensus       569 ~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~  605 (968)
T PLN00113        569 NVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI  605 (968)
T ss_pred             cCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence            9999999999999999999964 333444455566676

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.4e-52  Score=457.88  Aligned_cols=276  Identities=31%  Similarity=0.556  Sum_probs=236.3

Q ss_pred             cccccHHHHHhhccccc-cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeE
Q 002105          671 GKSLTIDEIISSTTEEN-LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV  749 (966)
Q Consensus       671 ~~~~~~~~~~~~~~~~~-~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~  749 (966)
                      ...|+++|+.+||+... -..+|+||||.||||.. .+|..||||++........++|..|+..+++ ++|||+|+|+||
T Consensus        62 ~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l-~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~-l~H~Nlv~LlGy  139 (361)
T KOG1187|consen   62 LRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVL-SDGTVVAVKRLSSNSGQGEREFLNEVEILSR-LRHPNLVKLLGY  139 (361)
T ss_pred             cceeeHHHHHHHHhCCchhcceecCCCeEEEEEEE-CCCCEEEEEEecCCCCcchhHHHHHHHHHhc-CCCcCcccEEEE
Confidence            36799999999997533 35678889999999997 7889999998865443314569999999999 699999999999


Q ss_pred             EecCC-eeEEEEEccCCCCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEE
Q 002105          750 CRSEK-AAYLVYEYIEGKELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR  823 (966)
Q Consensus       750 ~~~~~-~~~lv~Ey~~~g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~  823 (966)
                      |.+++ ..+||||||++|+|.++|+     .++|.+|++||.++|+||+|||+.+.++||||||||+|||||+++.+  |
T Consensus       140 C~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~a--K  217 (361)
T KOG1187|consen  140 CLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNA--K  217 (361)
T ss_pred             EecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCE--E
Confidence            99988 5999999999999999996     46899999999999999999999999999999999999999998887  5


Q ss_pred             EeccccceecCC---CC----cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCC-CchhhHHHHHHHhh
Q 002105          824 LSVPGLAYCTDS---KS----INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADF-GVHESIVEWARYCY  895 (966)
Q Consensus       824 ~~~~~~~~~~~~---~~----~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~-~~~~~~~~~~~~~~  895 (966)
                      ++|||++.....   ..    .||.+|+||||+..+.+|+|+|||||||+|+|++||++|.+... .....+.+|++..+
T Consensus       218 lsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~  297 (361)
T KOG1187|consen  218 LSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLL  297 (361)
T ss_pred             ccCccCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHH
Confidence            589998854322   11    78999999999999999999999999999999999999987543 22334679998888


Q ss_pred             ccCccccccccccc-CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 002105          896 SDCHLDTWVDPFIR-GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCF  951 (966)
Q Consensus       896 ~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~  951 (966)
                      .+....+++||.+. +.+.. .+++.++.++|.+|++.+|.+||+|.||+++|+...
T Consensus       298 ~~~~~~eiiD~~l~~~~~~~-~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~  353 (361)
T KOG1187|consen  298 EEGKLREIVDPRLKEGEYPD-EKEVKKLAELALRCLRPDPKERPTMSQVVKELEGIL  353 (361)
T ss_pred             HCcchhheeCCCccCCCCCh-HHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhc
Confidence            87788899999987 33331 267888999999999999999999999999997733

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-43  Score=384.92  Aligned_cols=240  Identities=28%  Similarity=0.441  Sum_probs=192.5

Q ss_pred             CCCCCccEEEEEEEecCCcE-EEEEEEeccCccc--ccchHHHHHHHHhhcCCCceeEEeeEEecCC-eeEEEEEccCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQ-FVVKKIIDVNTIT--TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK-AAYLVYEYIEGK  766 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~-vavk~~~~~~~~~--~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~-~~~lv~Ey~~~g  766 (966)
                      +|.|++|.||++..  .|.. ||||++...+...  .++|.+|+..+.+ ++|||||+++|+|.++. ...||||||++|
T Consensus        49 iG~G~~g~V~~~~~--~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~-l~HpNIV~f~G~~~~~~~~~~iVtEy~~~G  125 (362)
T KOG0192|consen   49 LGSGSFGTVYKGKW--RGTDVVAVKIISDPDFDDESRKAFRREASLLSR-LRHPNIVQFYGACTSPPGSLCIVTEYMPGG  125 (362)
T ss_pred             cccCCceeEEEEEe--CCceeEEEEEecchhcChHHHHHHHHHHHHHHh-CCCCCeeeEEEEEcCCCCceEEEEEeCCCC
Confidence            78999999999885  5666 9999886543322  4589999999999 79999999999999987 799999999999


Q ss_pred             CHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------C
Q 002105          767 ELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------S  835 (966)
Q Consensus       767 ~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~  835 (966)
                      +|.++++     .++|..+.++|.|||+||.|||.. .+ ||||||||+|||++.+. ..+|++|||++....      +
T Consensus       126 sL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~-~~-iIHrDLK~~NiLv~~~~-~~~KI~DFGlsr~~~~~~~~~~  202 (362)
T KOG0192|consen  126 SLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSE-GP-IIHRDLKSDNILVDLKG-KTLKIADFGLSREKVISKTSMT  202 (362)
T ss_pred             cHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC-CC-eeecccChhhEEEcCCC-CEEEECCCccceeecccccccc
Confidence            9999994     489999999999999999999954 22 99999999999999765 478999999986532      2


Q ss_pred             CCcCCcccccccccC--CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          836 KSINSSAYVAPETKE--SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~--~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      ...||+.|||||++.  ...|+.|+|||||||++|||+||+.||..... ...    +.......     ..|.+...  
T Consensus       203 ~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~-~~~----~~~v~~~~-----~Rp~~p~~--  270 (362)
T KOG0192|consen  203 SVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAP-VQV----ASAVVVGG-----LRPPIPKE--  270 (362)
T ss_pred             CCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCH-HHH----HHHHHhcC-----CCCCCCcc--
Confidence            257899999999999  66999999999999999999999999976432 111    11111111     11222211  


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                          ....+..++.+||+.||++||++.|++.+|+.+.+
T Consensus       271 ----~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~  305 (362)
T KOG0192|consen  271 ----CPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIMS  305 (362)
T ss_pred             ----CCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHH
Confidence                22356667788999999999999999999998544

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-42  Score=359.20  Aligned_cols=244  Identities=22%  Similarity=0.368  Sum_probs=192.1

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEec-cCcccccchHHHHHHHHhhcCCCceeEEeeEEecCC-eeEEEEEcc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIID-VNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK-AAYLVYEYI  763 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~-~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~-~~~lv~Ey~  763 (966)
                      +.+..+|+|..|+|||+++.++++.+|.|.+.. .+....++..+|++.+.+ ++||+||++||.|..++ .+.|+||||
T Consensus        82 e~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~-~~spyIV~~ygaF~~~~~~isI~mEYM  160 (364)
T KOG0581|consen   82 ERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRS-CQSPYIVGFYGAFYSNGEEISICMEYM  160 (364)
T ss_pred             hhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhh-CCCCCeeeEeEEEEeCCceEEeehhhc
Confidence            344456777777799999999999999999943 344456678899988888 69999999999999988 599999999


Q ss_pred             CCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----CCC
Q 002105          764 EGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----DSK  836 (966)
Q Consensus       764 ~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----~~~  836 (966)
                      ++|||+++++.   +++...-+||.+|.+||.|||+.  .+||||||||+|||++..+  .||++|||++...    ..+
T Consensus       161 DgGSLd~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~~--~~IIHRDIKPsNlLvNskG--eVKicDFGVS~~lvnS~a~t  236 (364)
T KOG0581|consen  161 DGGSLDDILKRVGRIPEPVLGKIARAVLRGLSYLHEE--RKIIHRDIKPSNLLVNSKG--EVKICDFGVSGILVNSIANT  236 (364)
T ss_pred             CCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhc--cCeeeccCCHHHeeeccCC--CEEeccccccHHhhhhhccc
Confidence            99999999985   88999999999999999999953  5899999999999999755  4799999987642    345


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchH
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ  916 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  916 (966)
                      .+||..|||||.+.+..|+.++||||||++++|+++|+.|+...........+.......+      ..|.++..  ...
T Consensus       237 fvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv~~------ppP~lP~~--~fS  308 (364)
T KOG0581|consen  237 FVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAIVDE------PPPRLPEG--EFS  308 (364)
T ss_pred             ccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHhcC------CCCCCCcc--cCC
Confidence            6899999999999999999999999999999999999999876411111111111111111      12222222  112


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          917 NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       917 ~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +   ++...+-.|+++||.+||+++|+++
T Consensus       309 ~---ef~~FV~~CL~Kdp~~R~s~~qLl~  334 (364)
T KOG0581|consen  309 P---EFRSFVSCCLRKDPSERPSAKQLLQ  334 (364)
T ss_pred             H---HHHHHHHHHhcCCcccCCCHHHHhc
Confidence            3   4556677999999999999999864

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-41  Score=352.08  Aligned_cols=191  Identities=29%  Similarity=0.459  Sum_probs=168.8

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      +....+|.|.|+.||+|++..++..||||++....  ....+-...|++.+.+ ++|||||+++++++.++.+|+|||||
T Consensus        13 ~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLke-l~H~nIV~l~d~~~~~~~i~lVMEyC   91 (429)
T KOG0595|consen   13 ELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKE-LKHPNIVRLLDCIEDDDFIYLVMEYC   91 (429)
T ss_pred             eehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHh-cCCcceeeEEEEEecCCeEEEEEEeC
Confidence            33445899999999999999999999999997653  3333446788888887 79999999999999999999999999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC-CC---ceEEEeccccceecC--
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK-DE---PHLRLSVPGLAYCTD--  834 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~-~~---~~~~~~~~~~~~~~~--  834 (966)
                      .||||.+|++   .+++...+.+..|+|.||++||   ..+||||||||.||||+.. ..   +.+|+.|||+++...  
T Consensus        92 ~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~---~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~  168 (429)
T KOG0595|consen   92 NGGDLSDYIRRRGRLPEATARHFMQQLASALQFLH---ENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPG  168 (429)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCch
Confidence            9999999997   4889999999999999999999   6699999999999999864 22   788999999997643  


Q ss_pred             ---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          835 ---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                         ...+|+|.|||||++...+|+.|+|+||.|+|+||+++|+.||++.
T Consensus       169 ~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~  217 (429)
T KOG0595|consen  169 SMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAE  217 (429)
T ss_pred             hHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCcccc
Confidence               3468999999999999999999999999999999999999999864

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.5e-41  Score=331.97  Aligned_cols=241  Identities=22%  Similarity=0.330  Sum_probs=187.3

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEec--cCcccccchHHHHHHHHhhcCCCceeEEee-EEecCCe-eEEEEEc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIID--VNTITTSSFWPDVSQFGKLIMHPNIVRLHG-VCRSEKA-AYLVYEY  762 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~--~~~~~~~~~~~e~~~~~~~~~H~niv~l~g-~~~~~~~-~~lv~Ey  762 (966)
                      ....+|+|.||.|||+..+.+|..||.|++.-  .+....++...|+..+.+ ++|||||++++ -+.+++. ++|||||
T Consensus        23 Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQ-L~HpNIVqYy~~~f~~~~evlnivmE~  101 (375)
T KOG0591|consen   23 ILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQ-LNHPNIVQYYAHSFIEDNEVLNIVMEL  101 (375)
T ss_pred             HHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHh-cCCchHHHHHHHhhhccchhhHHHHHh
Confidence            34567999999999999999999999999862  233344567888888887 69999999999 4444444 8999999


Q ss_pred             cCCCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCC--eEeecCCCCcEEEcCCCCceEEEeccccceec
Q 002105          763 IEGKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPS--VVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT  833 (966)
Q Consensus       763 ~~~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~--iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~  833 (966)
                      |++|||.+.++       .+++...+++..|+++||.++|.. -+.  |+||||||+||++|.++  .+|++|||++...
T Consensus       102 c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~-~~r~~VmHRDIKPaNIFl~~~g--vvKLGDfGL~r~l  178 (375)
T KOG0591|consen  102 CDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSK-IPRGTVMHRDIKPANIFLTANG--VVKLGDFGLGRFL  178 (375)
T ss_pred             hcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhcc-ccccceeeccCcchheEEcCCC--ceeeccchhHhHh
Confidence            99999999996       278899999999999999999963 244  99999999999999665  5799999998753


Q ss_pred             C------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccc
Q 002105          834 D------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF  907 (966)
Q Consensus       834 ~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  907 (966)
                      +      ...+|||.||+||.+.+.+|+.||||||+||++|||..-++||.++  ....+.+.+..    +.    ..|.
T Consensus       179 ~s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~--n~~~L~~KI~q----gd----~~~~  248 (375)
T KOG0591|consen  179 SSKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD--NLLSLCKKIEQ----GD----YPPL  248 (375)
T ss_pred             cchhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc--cHHHHHHHHHc----CC----CCCC
Confidence            3      2358999999999999999999999999999999999999999876  11112122111    11    1111


Q ss_pred             ccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002105          908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL  947 (966)
Q Consensus       908 ~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L  947 (966)
                      ...+++      ..+..++..|++.||+.||+.-..+..+
T Consensus       249 p~~~YS------~~l~~li~~ci~vd~~~RP~t~~~v~di  282 (375)
T KOG0591|consen  249 PDEHYS------TDLRELINMCIAVDPEQRPDTVPYVQDI  282 (375)
T ss_pred             cHHHhh------hHHHHHHHHHccCCcccCCCcchHHHHH
Confidence            112222      3455677789999999999854444333

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.8e-40  Score=341.54  Aligned_cols=241  Identities=22%  Similarity=0.343  Sum_probs=188.5

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc-----ccc--hHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT-----TSS--FWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~-----~~~--~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      ....|+|+||.|-+|....+|++||||.+.......     ...  ..+|++.+.+ ++|||||++++++..++..||||
T Consensus       177 ~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkk-L~HP~IV~~~d~f~~~ds~YmVl  255 (475)
T KOG0615|consen  177 SKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKK-LSHPNIVRIKDFFEVPDSSYMVL  255 (475)
T ss_pred             eeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHh-cCCCCEEEEeeeeecCCceEEEE
Confidence            345799999999999999999999999986542221     112  2467777767 79999999999999999999999


Q ss_pred             EccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC-CCceEEEeccccceec---
Q 002105          761 EYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK-DEPHLRLSVPGLAYCT---  833 (966)
Q Consensus       761 Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~-~~~~~~~~~~~~~~~~---  833 (966)
                      |||+||+|.+.+-   .+....-..++.|+..|+.|||   +.||+||||||+|||+..+ ....+|+.|||+++..   
T Consensus       256 E~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH---~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~~  332 (475)
T KOG0615|consen  256 EYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLH---SQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGEG  332 (475)
T ss_pred             EEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHH---HcCcccccCCcceEEeccCCcceEEEecccchhhccccc
Confidence            9999999999884   3777888899999999999999   6799999999999999876 5577899999999764   


Q ss_pred             --CCCCcCCcccccccccCCCCC---CCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccc
Q 002105          834 --DSKSINSSAYVAPETKESKDI---TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI  908 (966)
Q Consensus       834 --~~~~~~~~~y~aPE~~~~~~~---~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  908 (966)
                        +.+.+|||.|.|||++.++.+   ..|+|+||+|||||-++||.+||....+.........+.     ...  ..|..
T Consensus       333 sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI~~G-----~y~--f~p~~  405 (475)
T KOG0615|consen  333 SFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQILKG-----RYA--FGPLQ  405 (475)
T ss_pred             eehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCccHHHHHhcC-----ccc--ccChh
Confidence              345689999999999887654   348899999999999999999998776543222111111     111  11111


Q ss_pred             cCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       909 ~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                            +.+--.+..+++.+.+..||++|||+.|++.
T Consensus       406 ------w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~  436 (475)
T KOG0615|consen  406 ------WDRISEEALDLINWMLVVDPENRPSADEALN  436 (475)
T ss_pred             ------hhhhhHHHHHHHHHhhEeCcccCcCHHHHhc
Confidence                  1122235667777889999999999999873

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-39  Score=351.70  Aligned_cols=241  Identities=24%  Similarity=0.400  Sum_probs=193.4

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      .+..+|+|-||+|+.|.. .....||+|.+... ....++|.+|+..+.+ ++|+|||+++|+|..++.+|||||||+.|
T Consensus       210 l~~~LG~G~FG~V~~g~~-~~~~~vavk~ik~~-~m~~~~f~~Ea~iMk~-L~H~~lV~l~gV~~~~~piyIVtE~m~~G  286 (468)
T KOG0197|consen  210 LIRELGSGQFGEVWLGKW-NGSTKVAVKTIKEG-SMSPEAFLREAQIMKK-LRHEKLVKLYGVCTKQEPIYIVTEYMPKG  286 (468)
T ss_pred             HHHHhcCCccceEEEEEE-cCCCcccceEEecc-ccChhHHHHHHHHHHh-CcccCeEEEEEEEecCCceEEEEEecccC
Confidence            345679999999999997 44458999988665 4556778888877777 79999999999999988999999999999


Q ss_pred             CHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC------
Q 002105          767 ELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS------  835 (966)
Q Consensus       767 ~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~------  835 (966)
                      +|.+||+.     +.-.+.+.+|.|||+||+||+   +..+|||||.+.|||++++.  .+|++|||+++....      
T Consensus       287 sLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLe---s~~~IHRDLAARNiLV~~~~--~vKIsDFGLAr~~~d~~Y~~~  361 (468)
T KOG0197|consen  287 SLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLE---SKNYIHRDLAARNILVDEDL--VVKISDFGLARLIGDDEYTAS  361 (468)
T ss_pred             cHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHH---hCCccchhhhhhheeeccCc--eEEEcccccccccCCCceeec
Confidence            99999974     778889999999999999999   66899999999999999764  679999999975221      


Q ss_pred             -CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          836 -KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       836 -~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                       ...-...|.|||.+..++++.|||||||||+||||+| |+.||....  ...+++.+   .++.++.   .|       
T Consensus       362 ~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~ms--n~ev~~~l---e~GyRlp---~P-------  426 (468)
T KOG0197|consen  362 EGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMS--NEEVLELL---ERGYRLP---RP-------  426 (468)
T ss_pred             CCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCC--HHHHHHHH---hccCcCC---CC-------
Confidence             1122457999999999999999999999999999999 888876531  12222222   2222221   11       


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                        ..+..++.++|..||+.+|++|||++.....|+++..
T Consensus       427 --~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~~~  463 (468)
T KOG0197|consen  427 --EGCPDEVYELMKSCWHEDPEDRPTFETLREVLEDFFT  463 (468)
T ss_pred             --CCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHHHhhh
Confidence              2233478889999999999999999999999998443

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.5e-39  Score=354.15  Aligned_cols=238  Identities=22%  Similarity=0.368  Sum_probs=191.0

Q ss_pred             cccccccCCCCCccEEEEEEEecCCcEEEEEEEecc---CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          684 TEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV---NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       684 ~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~---~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      .+..-.-+|+|||+.||.++...+|..||+|.+.+.   .....+...+||+...+ +.|||||+++++|++.+.+|||.
T Consensus        19 ~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~-L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   19 RYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRS-LKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             eeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHh-cCCCcEEeeeeEeecCCceEEEE
Confidence            344455679999999999999999999999998663   22334456777766666 79999999999999999999999


Q ss_pred             EccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---
Q 002105          761 EYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       761 Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---  834 (966)
                      |+|++|+|.++++   .+++.+.+.+..||+.||.|||   +.+|||||||-+|++|++++  .||++|||+|....   
T Consensus        98 ELC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH---~~~IiHRDLKLGNlfL~~~~--~VKIgDFGLAt~le~~~  172 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLH---SLGIIHRDLKLGNLFLNENM--NVKIGDFGLATQLEYDG  172 (592)
T ss_pred             EecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH---hcCceecccchhheeecCcC--cEEecccceeeeecCcc
Confidence            9999999999997   4999999999999999999999   55899999999999999765  47999999987533   


Q ss_pred             ---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCC
Q 002105          835 ---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH  911 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  911 (966)
                         .+.+|||.|+|||++....++..+||||+|||||-|++|++||+... ..+.. ..++.       ....-|   ..
T Consensus       173 Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~-vkety-~~Ik~-------~~Y~~P---~~  240 (592)
T KOG0575|consen  173 ERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKT-VKETY-NKIKL-------NEYSMP---SH  240 (592)
T ss_pred             cccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccch-HHHHH-HHHHh-------cCcccc---cc
Confidence               24589999999999999999999999999999999999999998641 11111 11111       111111   12


Q ss_pred             CcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          912 VSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       912 ~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .+   .   +..+++..-++.+|.+|||+++|+.
T Consensus       241 ls---~---~A~dLI~~lL~~~P~~Rpsl~~vL~  268 (592)
T KOG0575|consen  241 LS---A---EAKDLIRKLLRPNPSERPSLDEVLD  268 (592)
T ss_pred             cC---H---HHHHHHHHHhcCCcccCCCHHHHhc
Confidence            22   2   3445556778999999999999985

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.7e-39  Score=364.21  Aligned_cols=245  Identities=24%  Similarity=0.410  Sum_probs=200.0

Q ss_pred             cccccCCCCCccEEEEEEEe-----cCCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSL-----ANDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~-----~~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      .....+|+|.||+||+|+..     .+.+.||||.+.+.... ..++|.+|++.+++ ++|||||+|+|+|.+++..++|
T Consensus       489 ~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~-l~H~nIVrLlGVC~~~~P~~Mv  567 (774)
T KOG1026|consen  489 VFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAE-LQHPNIVRLLGVCREGDPLCMV  567 (774)
T ss_pred             eehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHh-ccCCCeEEEEEEEccCCeeEEE
Confidence            55667899999999999853     23467999999876555 67889999999999 6999999999999999999999


Q ss_pred             EEccCCCCHHHHHH-------------c----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceE
Q 002105          760 YEYIEGKELSEVLR-------------N----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL  822 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~-------------~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~  822 (966)
                      +|||..|||.++|+             .    ++-.+.+.||.|||.||+||-   +...|||||...|+|+.++  -.|
T Consensus       568 FEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs---~~~FVHRDLATRNCLVge~--l~V  642 (774)
T KOG1026|consen  568 FEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLS---SHHFVHRDLATRNCLVGEN--LVV  642 (774)
T ss_pred             EEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCcccccchhhhhceeccc--eEE
Confidence            99999999999996             2    677888999999999999998   4479999999999999965  458


Q ss_pred             EEeccccceecCC--------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHH
Q 002105          823 RLSVPGLAYCTDS--------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARY  893 (966)
Q Consensus       823 ~~~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~  893 (966)
                      |++|||+.+..-+        ...-...|||||.+..++||++||||||||||||++| |+.|+.+-.  .+.+++.++.
T Consensus       643 KIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glS--n~EVIe~i~~  720 (774)
T KOG1026|consen  643 KISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLS--NQEVIECIRA  720 (774)
T ss_pred             EecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccc--hHHHHHHHHc
Confidence            9999999864221        1222458999999999999999999999999999998 999987532  3344444432


Q ss_pred             hhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          894 CYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       894 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                          +.+  +         +..+.+..++..||..||+.+|++||+++||-.+|++....
T Consensus       721 ----g~l--L---------~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~  765 (774)
T KOG1026|consen  721 ----GQL--L---------SCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQA  765 (774)
T ss_pred             ----CCc--c---------cCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhc
Confidence                221  1         11134456888999999999999999999999999994433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.4e-42  Score=355.57  Aligned_cols=472  Identities=29%  Similarity=0.404  Sum_probs=356.8

Q ss_pred             EEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCC-CCCCCCCCCCcEEeCCC
Q 002105           63 VNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTG-PVPIGSLSRLEILDLSN  141 (966)
Q Consensus        63 v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~Ls~  141 (966)
                      ...+++++|.+. .+.+.+.+|..|.+|++++|+++ ..|++++.. ..++.|+.++|+++. +...+.+.+|+.|+.++
T Consensus        47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l-~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~  123 (565)
T KOG0472|consen   47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGEL-EALKSLNVSHNKLSELPEQIGSLISLVKLDCSS  123 (565)
T ss_pred             hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHH-HHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence            456889999987 56677889999999999999998 889888776 899999999999986 33468899999999999


Q ss_pred             CCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCC
Q 002105          142 NMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIP  221 (966)
Q Consensus       142 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  221 (966)
                      |.+. .+|++++.+..|..|+..+|+++ ..|..+.++.+|..|++.+|++....|..+. ++.|++||...|-+. .+|
T Consensus       124 n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP  199 (565)
T KOG0472|consen  124 NELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLP  199 (565)
T ss_pred             ccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCC
Confidence            9998 68889999999999999999987 6788899999999999999999866555555 999999999999886 899


Q ss_pred             cCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhh-cCCCCCEEEccCCcCcccCchhhcCCC
Q 002105          222 KEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQLQ  300 (966)
Q Consensus       222 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~  300 (966)
                      +.++.+.+|+.|+|.+|++. .+| .|..++.|.+|+++.|++. .+|.... ++++|.+|||.+|+++ ..|.++.-+.
T Consensus       200 ~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr  275 (565)
T KOG0472|consen  200 PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR  275 (565)
T ss_pred             hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhh
Confidence            99999999999999999998 566 8999999999999999997 5676655 9999999999999998 7899999999


Q ss_pred             CCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCC---CCcEE-------EccCCc----ccccCC-
Q 002105          301 NLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQN---NLTVI-------DLSTNF----LTGKIP-  365 (966)
Q Consensus       301 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~---~L~~L-------~Ls~N~----l~~~~p-  365 (966)
                      +|++||+++|.+++ .|.++++| +|+.|.+.+|.+... ...+-...   -|++|       -+|.-.    =.+..| 
T Consensus       276 sL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~  352 (565)
T KOG0472|consen  276 SLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPS  352 (565)
T ss_pred             hhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCC
Confidence            99999999999994 78889999 999999999987521 11110000   00000       011000    000001 


Q ss_pred             C---CccCCCCccEEEccCCCCCCCCCCccccCc--cCceeeccccccCCcCChhhcCCCcccE-EcccCCCCCCccCcc
Q 002105          366 E---TLCDSGSLFKLILFSNSLEGKIPNSLSTCK--SLRRVRLQNNRLSGELSSEFTRLPLVYF-LDISGNDLSGRIGEQ  439 (966)
Q Consensus       366 ~---~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~~~~~~~l~~L~~-LdLs~N~l~~~~~~~  439 (966)
                      .   ......+.+.|+.+.-+++......|..-+  -...++++.|++. .+|..+..+..+.+ +++++|.+ +.+|..
T Consensus       353 ~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~  430 (565)
T KOG0472|consen  353 ESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLE  430 (565)
T ss_pred             CcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHH
Confidence            1   112233455566666565532222222111  2556777777776 34444444444433 34444444 356667


Q ss_pred             hhccCCCcEecCCCCcCCccCCCCcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccc
Q 002105          440 KWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVS  519 (966)
Q Consensus       440 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  519 (966)
                      +..+++|..|+|++|-+....-+.+.+..|+.||+|+|+|. .+|..+..+..++.+-.++|++....|+.+.+|.+|..
T Consensus       431 l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t  509 (565)
T KOG0472|consen  431 LSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT  509 (565)
T ss_pred             HHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence            77777777788877777644334666667888888888776 56777776666776667778887666666888888888


Q ss_pred             cccCCceeccccCccCCCCCCCcEEeCCCCcCc
Q 002105          520 LDLSNNQLSGHIPASLSEMPVLGQLDLSENQLS  552 (966)
Q Consensus       520 L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~  552 (966)
                      |||.+|.+. .+|..+++|++|+.|++++|+|.
T Consensus       510 LDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  510 LDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             eccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            888888887 77888888888888888888887

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-37  Score=338.33  Aligned_cols=239  Identities=18%  Similarity=0.349  Sum_probs=192.7

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ....++|+|..|.||.|+...++..||||++........+-.+.|+..+.. .+|+|||.+++.|..++.+|+|||||+|
T Consensus       276 ~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~-~~H~NiVnfl~Sylv~deLWVVMEym~g  354 (550)
T KOG0578|consen  276 TDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRD-LHHPNIVNFLDSYLVGDELWVVMEYMEG  354 (550)
T ss_pred             cchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHh-ccchHHHHHHHHhcccceeEEEEeecCC
Confidence            455678999999999999999999999999977666655556777777766 6999999999999999999999999999


Q ss_pred             CCHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CCC
Q 002105          766 KELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SKS  837 (966)
Q Consensus       766 g~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~~  837 (966)
                      |+|.+.+..  +++.+...|+.++++||+|||   ..+|||||||.+|||++.++.  +|++|||++....      .+.
T Consensus       355 gsLTDvVt~~~~~E~qIA~Icre~l~aL~fLH---~~gIiHrDIKSDnILL~~~g~--vKltDFGFcaqi~~~~~KR~Tm  429 (550)
T KOG0578|consen  355 GSLTDVVTKTRMTEGQIAAICREILQGLKFLH---ARGIIHRDIKSDNILLTMDGS--VKLTDFGFCAQISEEQSKRSTM  429 (550)
T ss_pred             CchhhhhhcccccHHHHHHHHHHHHHHHHHHH---hcceeeeccccceeEeccCCc--EEEeeeeeeeccccccCccccc
Confidence            999999864  889999999999999999999   669999999999999997655  8999999986532      345


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      +|||.|||||++....|++|+||||+|++++||+-|++||-.+......   |   .+...     -.|.+.. ......
T Consensus       430 VGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrAl---y---LIa~n-----g~P~lk~-~~klS~  497 (550)
T KOG0578|consen  430 VGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRAL---Y---LIATN-----GTPKLKN-PEKLSP  497 (550)
T ss_pred             cCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCChHHHH---H---HHhhc-----CCCCcCC-ccccCH
Confidence            8999999999999999999999999999999999999998643211111   1   11111     1111211 111123


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         ++.+...+|++.||++||+++|+++
T Consensus       498 ---~~kdFL~~cL~~dv~~RasA~eLL~  522 (550)
T KOG0578|consen  498 ---ELKDFLDRCLVVDVEQRASAKELLE  522 (550)
T ss_pred             ---HHHHHHHHHhhcchhcCCCHHHHhc
Confidence               3455667999999999999999874

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=9.7e-38  Score=335.05  Aligned_cols=232  Identities=23%  Similarity=0.397  Sum_probs=182.6

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      .+...|.|.-|.||.|+.  .+..|||||+.+..       ..+++.+.+ ++||||++|.|+|.....++||||||+.|
T Consensus       128 ELeWlGSGaQGAVF~Grl--~netVAVKKV~elk-------ETdIKHLRk-LkH~NII~FkGVCtqsPcyCIiMEfCa~G  197 (904)
T KOG4721|consen  128 ELEWLGSGAQGAVFLGRL--HNETVAVKKVRELK-------ETDIKHLRK-LKHPNIITFKGVCTQSPCYCIIMEFCAQG  197 (904)
T ss_pred             hhhhhccCcccceeeeec--cCceehhHHHhhhh-------hhhHHHHHh-ccCcceeeEeeeecCCceeEEeeeccccc
Confidence            345678888888999997  46689999985433       357788888 69999999999999999999999999999


Q ss_pred             CHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee-----cCCCCc
Q 002105          767 ELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC-----TDSKSI  838 (966)
Q Consensus       767 ~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~-----~~~~~~  838 (966)
                      -|.++|+.   ++......+..+||.||.|||.+   .|||||||.-|||+..++  .||++|||....     +...++
T Consensus       198 qL~~VLka~~~itp~llv~Wsk~IA~GM~YLH~h---KIIHRDLKSPNiLIs~~d--~VKIsDFGTS~e~~~~STkMSFa  272 (904)
T KOG4721|consen  198 QLYEVLKAGRPITPSLLVDWSKGIAGGMNYLHLH---KIIHRDLKSPNILISYDD--VVKISDFGTSKELSDKSTKMSFA  272 (904)
T ss_pred             cHHHHHhccCccCHHHHHHHHHHhhhhhHHHHHh---hHhhhccCCCceEeeccc--eEEeccccchHhhhhhhhhhhhh
Confidence            99999974   66667778899999999999955   899999999999998554  589999998754     334568


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      ||..|||||++...++++|+||||||||||||+||..||..-   ....+-|..   ....    +.-.++..+      
T Consensus       273 GTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdV---dssAIIwGV---GsNs----L~LpvPstc------  336 (904)
T KOG4721|consen  273 GTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDV---DSSAIIWGV---GSNS----LHLPVPSTC------  336 (904)
T ss_pred             hhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCcccc---chheeEEec---cCCc----ccccCcccC------
Confidence            999999999999999999999999999999999999998631   111111210   0001    111111122      


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      ..-+.-++..||+..|..||++++++.-|+-
T Consensus       337 P~GfklL~Kqcw~sKpRNRPSFrqil~HldI  367 (904)
T KOG4721|consen  337 PDGFKLLLKQCWNSKPRNRPSFRQILLHLDI  367 (904)
T ss_pred             chHHHHHHHHHHhcCCCCCccHHHHHHHHhh
Confidence            2234446678999999999999999988874

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.6e-41  Score=349.87  Aligned_cols=478  Identities=29%  Similarity=0.441  Sum_probs=388.8

Q ss_pred             cccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCC-CCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCc
Q 002105           80 SIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTG-PVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGL  158 (966)
Q Consensus        80 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  158 (966)
                      .+..-.-|+.|++++|.+. .+-+++ ..+..|.+|++.+|+++. +..++.+..++.|+.|+|+++ .+|+.++++.+|
T Consensus        40 ~wW~qv~l~~lils~N~l~-~l~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l  116 (565)
T KOG0472|consen   40 NWWEQVDLQKLILSHNDLE-VLREDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISL  116 (565)
T ss_pred             hhhhhcchhhhhhccCchh-hccHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhh
Confidence            3455567899999999997 455444 556999999999999986 444689999999999999998 689999999999


Q ss_pred             CEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecc
Q 002105          159 KVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYN  238 (966)
Q Consensus       159 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  238 (966)
                      +.|+.++|.+. .+|++++.+..|+.++..+|+++ ..|++++++.+|..+++.+|++....|..+ +++.|++||...|
T Consensus       117 ~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N  193 (565)
T KOG0472|consen  117 VKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSN  193 (565)
T ss_pred             hhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchh
Confidence            99999999987 67889999999999999999988 588899999999999999999985444444 4999999999999


Q ss_pred             cccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhc-CCCCCceecccCCCCCCCCC
Q 002105          239 NLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVI-QLQNLEILHLFSNNFTGKIP  317 (966)
Q Consensus       239 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p  317 (966)
                      -+. .+|+.++.|.+|..|+|..|++. .+| .|.++..|.+|+++.|.+. .+|.+.. .++++..|||..|++. ..|
T Consensus       194 ~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~P  268 (565)
T KOG0472|consen  194 LLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVP  268 (565)
T ss_pred             hhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCc
Confidence            887 78999999999999999999997 566 7999999999999999998 5666655 8999999999999998 689


Q ss_pred             CCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCC---ccEEE-------ccCCC----
Q 002105          318 SSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGS---LFKLI-------LFSNS----  383 (966)
Q Consensus       318 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~---L~~L~-------l~~N~----  383 (966)
                      ..++-+.+|.+||+++|.++ .+|..++++ .|+.|-+.+|.+... ...+...+.   |++|.       ++.-.    
T Consensus       269 de~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e  345 (565)
T KOG0472|consen  269 DEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE  345 (565)
T ss_pred             hHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence            99999999999999999998 468889999 999999999988642 111111110   11110       00000    


Q ss_pred             CCCCCC-C---ccccCccCceeeccccccCCcCChhhcCC--CcccEEcccCCCCCCccCcchhccCCCcE-ecCCCCcC
Q 002105          384 LEGKIP-N---SLSTCKSLRRVRLQNNRLSGELSSEFTRL--PLVYFLDISGNDLSGRIGEQKWEMTSLQM-LNLAGNNF  456 (966)
Q Consensus       384 l~~~~p-~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~LdLs~N~l~~~~~~~~~~l~~L~~-L~Ls~N~l  456 (966)
                      -++..| .   ....+.+.+.|++++-+++..+...|...  .-.+..+++.|++. .+|..+..+..+++ +.+++|.+
T Consensus       346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i  424 (565)
T KOG0472|consen  346 TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI  424 (565)
T ss_pred             ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence            001111 1   12345678899999999986665555433  24788999999998 46666666666555 45555555


Q ss_pred             CccCCC-CcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccC
Q 002105          457 SGKLPD-SFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASL  535 (966)
Q Consensus       457 ~~~~p~-~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  535 (966)
                      + .+|. +..+++|..|+|++|.+. .+|..++.+..|+.||+|.|+|. .+|..+..+..|+.+-.++|++....|+.+
T Consensus       425 s-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l  501 (565)
T KOG0472|consen  425 S-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGL  501 (565)
T ss_pred             c-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHh
Confidence            4 5555 567789999999999886 78999999999999999999886 789999988899999999999987767779


Q ss_pred             CCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCccc
Q 002105          536 SEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFH  576 (966)
Q Consensus       536 ~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l~  576 (966)
                      ++|.+|.+|||.+|.+. .||+.++++++|+.|++.+|+|.
T Consensus       502 ~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  502 KNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            99999999999999998 78999999999999999999998

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-38  Score=342.23  Aligned_cols=361  Identities=26%  Similarity=0.258  Sum_probs=195.7

Q ss_pred             EEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeeccc
Q 002105          160 VLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNN  239 (966)
Q Consensus       160 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  239 (966)
                      +||+++|.++..-+..|.++++|+.+++..|.++ .+|...+...+|+.|+|.+|.|+..-.+++..++.|+.||||.|.
T Consensus        82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~  160 (873)
T KOG4194|consen   82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL  160 (873)
T ss_pred             eeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence            3444444444444444444555555555544444 344444444445555555555554444455555555555555555


Q ss_pred             ccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCC
Q 002105          240 LTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSS  319 (966)
Q Consensus       240 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  319 (966)
                      |+...-.+|..-.++++|+|++|.++..-...|.++.+|.+|.|+.|+++...+..|.++++|+.|+|..|++.-.---.
T Consensus       161 is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt  240 (873)
T KOG4194|consen  161 ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT  240 (873)
T ss_pred             hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh
Confidence            55433344444445556666666555555555555555666666666665444455555666666666666554332344


Q ss_pred             CCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCc
Q 002105          320 LASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLR  399 (966)
Q Consensus       320 l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~  399 (966)
                      |.++++|+.|.|..|.+...-...|..+.+++.|+|+.|+++..-..++.++..|+.|++++|.+....++.+..+++|+
T Consensus       241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~  320 (873)
T KOG4194|consen  241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK  320 (873)
T ss_pred             hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence            55666666666666666655555566666666666666666655555566666666666666666666666666666666


Q ss_pred             eeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCccCCCC----cCcccccccccc
Q 002105          400 RVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDS----FGSDQLENLDLS  475 (966)
Q Consensus       400 ~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~~~L~~L~Ls  475 (966)
                      .|+|++|+|+...+..|..+..|+.|+|++|+++..-...|..+++|+.|||++|.+++.+.+.    -++++|+.|+|.
T Consensus       321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~  400 (873)
T KOG4194|consen  321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT  400 (873)
T ss_pred             eEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence            6666666666666666666666666666666666555555555566666666666655544431    133444444444


Q ss_pred             cccccccCCCcccCcCCCCEEEccCCccCCCChhhcccccccccccc
Q 002105          476 ENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDL  522 (966)
Q Consensus       476 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  522 (966)
                      +|++..+..+.|.++.+|++|||.+|.+-..-|.+|..+ .|+.|-+
T Consensus       401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM  446 (873)
T ss_pred             CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence            444443333444444444444444444444444444444 4444433

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=2e-37  Score=337.96  Aligned_cols=253  Identities=20%  Similarity=0.293  Sum_probs=195.9

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ..+|.|.||.||||++  -| .||||.+...  .....++|..||..+.+ -||.||+-+.|||..+.. .||.-+|+|-
T Consensus       398 ~rIGsGsFGtV~Rg~w--hG-dVAVK~Lnv~~pt~~qlqaFKnEVa~lkk-TRH~NIlLFMG~~~~p~~-AIiTqwCeGs  472 (678)
T KOG0193|consen  398 ERIGSGSFGTVYRGRW--HG-DVAVKLLNVDDPTPEQLQAFKNEVAVLKK-TRHENILLFMGACMNPPL-AIITQWCEGS  472 (678)
T ss_pred             ceeccccccceeeccc--cc-ceEEEEEecCCCCHHHHHHHHHHHHHHhh-cchhhheeeehhhcCCce-eeeehhccCc
Confidence            3468899999999986  33 6899988543  33345679999999998 599999999999998877 9999999999


Q ss_pred             CHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--------
Q 002105          767 ELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--------  834 (966)
Q Consensus       767 ~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--------  834 (966)
                      +|..+||    +++..+.++||.|||+||.|||   .++|||||+|..||+++++  .+|+++|||++....        
T Consensus       473 SLY~hlHv~etkfdm~~~idIAqQiaqGM~YLH---AK~IIHrDLKSnNIFl~~~--~kVkIgDFGLatvk~~w~g~~q~  547 (678)
T KOG0193|consen  473 SLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLH---AKNIIHRDLKSNNIFLHED--LKVKIGDFGLATVKTRWSGEQQL  547 (678)
T ss_pred             hhhhhccchhhhhhHHHHHHHHHHHHHhhhhhh---hhhhhhhhccccceEEccC--CcEEEecccceeeeeeecccccc
Confidence            9999997    3778888999999999999999   6799999999999999975  568999999985421        


Q ss_pred             CCCcCCcccccccccC---CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCC
Q 002105          835 SKSINSSAYVAPETKE---SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH  911 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~---~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  911 (966)
                      ....|...|||||++.   ..+|++.+||||||||+|||+||..||...  ..+.+ -|+   +..+.+  ..|+..  .
T Consensus       548 ~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~--~~dqI-ifm---VGrG~l--~pd~s~--~  617 (678)
T KOG0193|consen  548 EQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQ--NRDQI-IFM---VGRGYL--MPDLSK--I  617 (678)
T ss_pred             CCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCC--Chhhe-EEE---eccccc--Cccchh--h
Confidence            2235677899999876   357999999999999999999999999732  12211 111   001100  011111  0


Q ss_pred             CcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc-cCCcCCCCccCC
Q 002105          912 VSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR-ISSCVSGLKFSS  964 (966)
Q Consensus       912 ~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~-~~~~~~~~~~~~  964 (966)
                         .....+++.+|+..||..+|++||.+.+++.+|+..++ .+.-++++.+|+
T Consensus       618 ---~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~~~pki~RS~S~P~  668 (678)
T KOG0193|consen  618 ---RSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLPSLPKINRSASEPV  668 (678)
T ss_pred             ---hccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhhcccccccCcCccc
Confidence               12344567778899999999999999999999998666 455566666664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-38  Score=339.86  Aligned_cols=387  Identities=25%  Similarity=0.279  Sum_probs=283.5

Q ss_pred             EEEEcCCCCccccccccccC--CCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCC-CCCCCcEEeCC
Q 002105           64 NAIELSAKNISGKISSSIFH--LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIG-SLSRLEILDLS  140 (966)
Q Consensus        64 ~~L~L~~~~l~~~~~~~~~~--l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls  140 (966)
                      ..||.+.+.+...--..+..  .+..++||+|+|.++ .+..+.|..+++|+.++|.+|.++...-++ ...+|+.|+|.
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~  133 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR  133 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence            44566666554322222211  134577999999998 788888888899999999999998543344 44569999999


Q ss_pred             CCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCC
Q 002105          141 NNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEI  220 (966)
Q Consensus       141 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  220 (966)
                      +|.|+..-.+++..++.|++||||.|.++...-.+|..-.++++|+|++|+++..-...|..+.+|..|.|+.|+++...
T Consensus       134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp  213 (873)
T KOG4194|consen  134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP  213 (873)
T ss_pred             ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence            99998877788888999999999999888655566777778888888888887776777777888888888888887555


Q ss_pred             CcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCC
Q 002105          221 PKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQ  300 (966)
Q Consensus       221 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  300 (966)
                      +..|.+|++|+.|+|..|+|.-.---.|..|++|+.|.|..|.+.......|..+..+++|+|+.|+++..-..++.+++
T Consensus       214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt  293 (873)
T KOG4194|consen  214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT  293 (873)
T ss_pred             HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence            56677788888888888877633345677788888888888887766666777788888888888887766667777777


Q ss_pred             CCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEcc
Q 002105          301 NLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILF  380 (966)
Q Consensus       301 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~  380 (966)
                      .|+.|+|++|.|...-++.+.-.++|++|+|++|+++...+..|..+..|+.|+|+.|.++..-...|..+.+|.+|+|+
T Consensus       294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr  373 (873)
T KOG4194|consen  294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR  373 (873)
T ss_pred             hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence            88888888887777777777777777777777777777667777777777777777777776666666666777777777


Q ss_pred             CCCCCCCCCC---ccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCC
Q 002105          381 SNSLEGKIPN---SLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLA  452 (966)
Q Consensus       381 ~N~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls  452 (966)
                      +|.++..+.+   .|.++++|+.|+|.+|++..+...+|.+++.|+.|||.+|.|...-+..|..+ .|+.|.+.
T Consensus       374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  374 SNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             CCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            7776654433   45666777777777777766666667777777777777776666666666555 56555544

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-36  Score=317.30  Aligned_cols=249  Identities=20%  Similarity=0.278  Sum_probs=185.4

Q ss_pred             ccccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          683 TTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       683 ~~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      .+++-...+|.|..+.||+|+..+.+..||||++.-.+ ....++..+|+ +.+++++|||||+++..|..+..+|+||.
T Consensus        26 ~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~-~~msl~~HPNIv~~~~sFvv~~~LWvVmp  104 (516)
T KOG0582|consen   26 KDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEV-QTMSLIDHPNIVTYHCSFVVDSELWVVMP  104 (516)
T ss_pred             cceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHH-HHhhhcCCCCcceEEEEEEecceeEEeeh
Confidence            34566667888888999999999999999999985322 22223444555 45566899999999999999999999999


Q ss_pred             ccCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec---
Q 002105          762 YIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT---  833 (966)
Q Consensus       762 y~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~---  833 (966)
                      ||.+|++.+.++.     +++.....|..++.+||.|||   ..|-||||||++|||+|+++  .|+++|||...+.   
T Consensus       105 fMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH---~~G~IHRdvKAgnILi~~dG--~VkLadFgvsa~l~~~  179 (516)
T KOG0582|consen  105 FMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLH---QNGHIHRDVKAGNILIDSDG--TVKLADFGVSASLFDS  179 (516)
T ss_pred             hhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHH---hcCceecccccccEEEcCCC--cEEEcCceeeeeeccc
Confidence            9999999999973     777888889999999999999   66999999999999999765  4788999876542   


Q ss_pred             ------C-CCCcCCcccccccccC--CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccc
Q 002105          834 ------D-SKSINSSAYVAPETKE--SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWV  904 (966)
Q Consensus       834 ------~-~~~~~~~~y~aPE~~~--~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  904 (966)
                            . ...+||++|||||++.  ...|+.|+|||||||+..||++|..||... ...+.+..-    +++....  .
T Consensus       180 G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~-pPmkvLl~t----Lqn~pp~--~  252 (516)
T KOG0582|consen  180 GDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKY-PPMKVLLLT----LQNDPPT--L  252 (516)
T ss_pred             CceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccC-ChHHHHHHH----hcCCCCC--c
Confidence                  1 3457999999999843  457999999999999999999999998643 222222111    1111100  0


Q ss_pred             cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          905 DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       905 d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      + ............-..+.+++-.|+++||.+|||++++++
T Consensus       253 ~-t~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlk  292 (516)
T KOG0582|consen  253 L-TSGLDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLK  292 (516)
T ss_pred             c-cccCChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence            0 000001111112235666777999999999999999874

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-37  Score=344.47  Aligned_cols=242  Identities=20%  Similarity=0.347  Sum_probs=197.4

Q ss_pred             cCCCCCccEEEEEEEecCC---cEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          690 SRGKKGVSSSYKVRSLAND---MQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~---~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .+|.|-||+||+|+.+..|   ..||||.++... .....+|..|...+++ ..||||++|-|+.......+||.|||+|
T Consensus       636 VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQ-FdHPNIIrLEGVVTks~PvMIiTEyMEN  714 (996)
T KOG0196|consen  636 VIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQ-FDHPNIIRLEGVVTKSKPVMIITEYMEN  714 (996)
T ss_pred             EEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhccc-CCCCcEEEEEEEEecCceeEEEhhhhhC
Confidence            4588889999999987666   579999997653 3445689999999999 6999999999999999999999999999


Q ss_pred             CCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCCC---c
Q 002105          766 KELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---I  838 (966)
Q Consensus       766 g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~~---~  838 (966)
                      |+|+.+|+    +++|.+...+..+||.||.||-   ..+.|||||.+.|||++.+..  -|++|||+++..+...   .
T Consensus       715 GsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLs---dm~YVHRDLAARNILVNsnLv--CKVsDFGLSRvledd~~~~y  789 (996)
T KOG0196|consen  715 GSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLS---DMNYVHRDLAARNILVNSNLV--CKVSDFGLSRVLEDDPEAAY  789 (996)
T ss_pred             CcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHh---hcCchhhhhhhhheeeccceE--EEeccccceeecccCCCccc
Confidence            99999998    3889999999999999999999   558999999999999997654  4789999986532111   1


Q ss_pred             ------CCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCC
Q 002105          839 ------NSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH  911 (966)
Q Consensus       839 ------~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  911 (966)
                            -...|.|||.+..+++|.+||||||||||||.++ |.+||-.. . ...++.-+..   +-++    .      
T Consensus       790 tt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdm-S-NQdVIkaIe~---gyRL----P------  854 (996)
T KOG0196|consen  790 TTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDM-S-NQDVIKAIEQ---GYRL----P------  854 (996)
T ss_pred             cccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCccccc-c-hHHHHHHHHh---ccCC----C------
Confidence                  1347999999999999999999999999999876 99998642 1 2222232222   1111    1      


Q ss_pred             CcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 002105          912 VSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS  954 (966)
Q Consensus       912 ~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~  954 (966)
                        ...++...+.+||+.||++|-.+||.+.+++..|++++|.+
T Consensus       855 --pPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDklIrnP  895 (996)
T KOG0196|consen  855 --PPMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIRNP  895 (996)
T ss_pred             --CCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCc
Confidence              11344567889999999999999999999999999999875

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=4.5e-36  Score=336.95  Aligned_cols=244  Identities=20%  Similarity=0.294  Sum_probs=185.2

Q ss_pred             cccCCCCCccEEEEEEEe-----cCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecC-CeeEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSL-----ANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE-KAAYLVY  760 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~-----~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~-~~~~lv~  760 (966)
                      ...+|+||||.||+|+..     ..+..||||++..... ...+.+..|+..+.++.+|||||+++|+|..+ +..++||
T Consensus        12 ~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv~   91 (338)
T cd05102          12 GKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVIV   91 (338)
T ss_pred             eeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCCceEEEE
Confidence            345799999999999752     3456799998864322 22345788888888744899999999998764 4689999


Q ss_pred             EccCCCCHHHHHHc-----------------------------------------------------------------C
Q 002105          761 EYIEGKELSEVLRN-----------------------------------------------------------------L  775 (966)
Q Consensus       761 Ey~~~g~L~~~l~~-----------------------------------------------------------------l  775 (966)
                      ||+++|+|.++++.                                                                 +
T Consensus        92 ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  171 (338)
T cd05102          92 EFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSPL  171 (338)
T ss_pred             ecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccccccCCC
Confidence            99999999998852                                                                 5


Q ss_pred             CHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--------CCCcCCccccccc
Q 002105          776 SWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--------SKSINSSAYVAPE  847 (966)
Q Consensus       776 ~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~y~aPE  847 (966)
                      +|.+..+++.||++||+|||   +.+|+||||||+||+++.+.  .++++|||++....        ....+++.|||||
T Consensus       172 ~~~~~~~~~~qi~~aL~~LH---~~~ivHrDiKp~Nil~~~~~--~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE  246 (338)
T cd05102         172 TMEDLICYSFQVARGMEFLA---SRKCIHRDLAARNILLSENN--VVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPE  246 (338)
T ss_pred             CHHHHHHHHHHHHHHHHHHH---HCCEECCCCccceEEEcCCC--cEEEeecccccccccCcchhcccCCCCCccccCcH
Confidence            67788899999999999999   56999999999999998654  57889999875321        1223457899999


Q ss_pred             ccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHH
Q 002105          848 TKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLA  926 (966)
Q Consensus       848 ~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~  926 (966)
                      ++.+..++.++|||||||++|||+| |+.||...... +..   ......+..      +......      ..++.+++
T Consensus       247 ~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~-~~~---~~~~~~~~~------~~~~~~~------~~~l~~li  310 (338)
T cd05102         247 SIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIN-EEF---CQRLKDGTR------MRAPENA------TPEIYRIM  310 (338)
T ss_pred             HhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCcc-HHH---HHHHhcCCC------CCCCCCC------CHHHHHHH
Confidence            9999999999999999999999997 99998753211 111   111111111      1111111      13567788


Q ss_pred             HHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          927 LHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       927 ~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      .+||+.||++||||.||+++|+++++
T Consensus       311 ~~cl~~dp~~RPs~~el~~~l~~~~~  336 (338)
T cd05102         311 LACWQGDPKERPTFSALVEILGDLLQ  336 (338)
T ss_pred             HHHccCChhhCcCHHHHHHHHHHHHh
Confidence            99999999999999999999998654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=6.3e-37  Score=318.69  Aligned_cols=190  Identities=28%  Similarity=0.419  Sum_probs=166.1

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc---ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      .+.+..+|+|+||.||.++...+++.+|.|.+.+..-..   .+...+|...+.+ ++||.||+++-.|++++.+|+|+|
T Consensus        27 F~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~-v~hPFiv~l~ysFQt~~kLylVld  105 (357)
T KOG0598|consen   27 FEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSK-IKHPFIVKLIYSFQTEEKLYLVLD  105 (357)
T ss_pred             eeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHh-CCCCcEeeeEEecccCCeEEEEEe
Confidence            356777899999999999999999999999986543322   2334566666666 899999999999999999999999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee------
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------  832 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~------  832 (966)
                      |+.||+|..+|+   .+++....-++..|+.||.|||   +.+|||||+||+|||||.+  .++++.|||++..      
T Consensus       106 ~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH---~~gIiyRDlKPENILLd~~--GHi~LtDFgL~k~~~~~~~  180 (357)
T KOG0598|consen  106 YLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLH---SKGIIYRDLKPENILLDEQ--GHIKLTDFGLCKEDLKDGD  180 (357)
T ss_pred             ccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHeeecCC--CcEEEeccccchhcccCCC
Confidence            999999999997   4888888889999999999999   6699999999999999954  6789999999864      


Q ss_pred             cCCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          833 TDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       833 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                      .+...+||+.|||||++.+..|+..+|.||+||++|||+||.+||.+.
T Consensus       181 ~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~  228 (357)
T KOG0598|consen  181 ATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAE  228 (357)
T ss_pred             ccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCc
Confidence            234468999999999999999999999999999999999999999764

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-35  Score=324.34  Aligned_cols=239  Identities=21%  Similarity=0.254  Sum_probs=185.8

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc---ccchHHHHHHHHhhcCCCceeEEeeEEec----CCeeEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---TSSFWPDVSQFGKLIMHPNIVRLHGVCRS----EKAAYLVY  760 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---~~~~~~e~~~~~~~~~H~niv~l~g~~~~----~~~~~lv~  760 (966)
                      ...+|+||++.||+|..  +|..||||++.......   .+.|.+|+..+.+ ++|||||+++|++.+    ....++||
T Consensus        25 ~~~i~~g~~~~v~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~nIv~~~g~~~~~~~~~~~~~lv~  101 (283)
T PHA02988         25 SVLIKENDQNSIYKGIF--NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRR-IDSNNILKIYGFIIDIVDDLPRLSLIL  101 (283)
T ss_pred             CeEEeeCCceEEEEEEE--CCEEEEEEeccccccccHHHHHHHHHHHHHHHh-cCCCCEEEEeeeEEecccCCCceEEEE
Confidence            34578899999999986  78899999986543222   2456788888888 799999999999976    34689999


Q ss_pred             EccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---
Q 002105          761 EYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       761 Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---  834 (966)
                      ||+++|+|.++++   .++|..+.+++.+++.|++|||..  .+++||||||+||+++++.  .+++.|||++....   
T Consensus       102 Ey~~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~~~Hrdlkp~nill~~~~--~~kl~dfg~~~~~~~~~  177 (283)
T PHA02988        102 EYCTRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKY--TNKPYKNLTSVSFLVTENY--KLKIICHGLEKILSSPP  177 (283)
T ss_pred             EeCCCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHhc--CCCCCCcCChhhEEECCCC--cEEEcccchHhhhcccc
Confidence            9999999999996   489999999999999999999952  3678999999999999765  46888999876422   


Q ss_pred             CCCcCCcccccccccCC--CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 SKSINSSAYVAPETKES--KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~--~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                      ....+++.|+|||+..+  ..++.++|||||||++|||+||+.||....  ...+.+.+   .....     .+.+....
T Consensus       178 ~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~--~~~~~~~i---~~~~~-----~~~~~~~~  247 (283)
T PHA02988        178 FKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLT--TKEIYDLI---INKNN-----SLKLPLDC  247 (283)
T ss_pred             ccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCC--HHHHHHHH---HhcCC-----CCCCCCcC
Confidence            23467889999999876  689999999999999999999999997531  11111111   11110     11111111


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                            ..++.+++.+||+.||++||||+||++.|+.
T Consensus       248 ------~~~l~~li~~cl~~dp~~Rps~~ell~~l~~  278 (283)
T PHA02988        248 ------PLEIKCIVEACTSHDSIKRPNIKEILYNLSL  278 (283)
T ss_pred             ------cHHHHHHHHHHhcCCcccCcCHHHHHHHHHH
Confidence                  1246678889999999999999999999987

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3e-36  Score=320.70  Aligned_cols=239  Identities=24%  Similarity=0.372  Sum_probs=183.4

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCC--eeEEEEEccCCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK--AAYLVYEYIEGK  766 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~--~~~lv~Ey~~~g  766 (966)
                      ..+|+|.||.||.+....+|...|||.+...+....+...+|+..+.+ ++|||||+++|......  .+++.|||+++|
T Consensus        23 ~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~-l~~p~IV~~~G~~~~~~~~~~~i~mEy~~~G  101 (313)
T KOG0198|consen   23 KLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSR-LNHPNIVQYYGSSSSRENDEYNIFMEYAPGG  101 (313)
T ss_pred             ccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHh-CCCCCEEeeCCccccccCeeeEeeeeccCCC
Confidence            356889999999999988899999999865533334456788888888 68999999999855444  699999999999


Q ss_pred             CHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--------
Q 002105          767 ELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--------  834 (966)
Q Consensus       767 ~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--------  834 (966)
                      +|.+++.+    ++.....+++.||++||+|||   +.+||||||||+|||++.. ...+|++|||.+....        
T Consensus       102 sL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylH---s~g~vH~DiK~~NiLl~~~-~~~~KlaDFG~a~~~~~~~~~~~~  177 (313)
T KOG0198|consen  102 SLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLH---SKGIVHCDIKPANILLDPS-NGDVKLADFGLAKKLESKGTKSDS  177 (313)
T ss_pred             cHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCcccceEEEeCC-CCeEEeccCccccccccccccccc
Confidence            99999973    789999999999999999999   6699999999999999973 2357899999876432        


Q ss_pred             -CCCcCCcccccccccCCCC-CCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 -SKSINSSAYVAPETKESKD-ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~-~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                       ....||+.|||||++..+. ...++||||+||++.||+||++|+.......    ++.-......     .-|.++...
T Consensus       178 ~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~~----~~~~~ig~~~-----~~P~ip~~l  248 (313)
T KOG0198|consen  178 ELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFFEEA----EALLLIGRED-----SLPEIPDSL  248 (313)
T ss_pred             cccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhcchH----HHHHHHhccC-----CCCCCCccc
Confidence             2357999999999998633 3359999999999999999999987531111    1111111111     112233222


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL  947 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L  947 (966)
                      +   +   +..++...|++.||++||||++++..-
T Consensus       249 s---~---~a~~Fl~~C~~~~p~~Rpta~eLL~hp  277 (313)
T KOG0198|consen  249 S---D---EAKDFLRKCFKRDPEKRPTAEELLEHP  277 (313)
T ss_pred             C---H---HHHHHHHHHhhcCcccCcCHHHHhhCh
Confidence            2   2   344566799999999999999987654

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-35  Score=329.83  Aligned_cols=243  Identities=21%  Similarity=0.337  Sum_probs=190.0

Q ss_pred             ccCCCCCccEEEEEEEecCCc---E-EEEEEEecc---CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          689 TSRGKKGVSSSYKVRSLANDM---Q-FVVKKIIDV---NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~---~-vavk~~~~~---~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ..+|+|.||.||+|+....+.   . ||||.....   ......+|..|.+.+.+ ++|||||++||++..+..+|+|||
T Consensus       163 kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~-l~H~NVVr~yGVa~~~~Pl~ivmE  241 (474)
T KOG0194|consen  163 KKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQ-LNHPNVVRFYGVAVLEEPLMLVME  241 (474)
T ss_pred             ceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHh-CCCCCEEEEEEEEcCCCccEEEEE
Confidence            467999999999999866533   3 788887642   23345678888877777 799999999999999999999999


Q ss_pred             ccCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCCC
Q 002105          762 YIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS  837 (966)
Q Consensus       762 y~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~~  837 (966)
                      +|+||+|.+||+.    ++..++.+++.++|+||+|||   +.++|||||-++|+|++.+..  +|++|||++.......
T Consensus       242 l~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh---~k~~IHRDIAARNcL~~~~~~--vKISDFGLs~~~~~~~  316 (474)
T KOG0194|consen  242 LCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLH---SKNCIHRDIAARNCLYSKKGV--VKISDFGLSRAGSQYV  316 (474)
T ss_pred             ecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHH---HCCCcchhHhHHHheecCCCe--EEeCccccccCCccee
Confidence            9999999999974    889999999999999999999   668999999999999996543  6999999976543111


Q ss_pred             ------cCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHH-HHhhccCccccccccccc
Q 002105          838 ------INSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWA-RYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       838 ------~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~  909 (966)
                            .-...|+|||.+....|++|+|||||||++||+.+ |..||.+..  ...+..++ ...++   . . .    .
T Consensus       317 ~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~--~~~v~~kI~~~~~r---~-~-~----~  385 (474)
T KOG0194|consen  317 MKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMK--NYEVKAKIVKNGYR---M-P-I----P  385 (474)
T ss_pred             eccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCC--HHHHHHHHHhcCcc---C-C-C----C
Confidence                  12457999999999999999999999999999999 888987542  11222333 11111   0 0 0    0


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS  954 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~  954 (966)
                      .      ....++..++..||..+|++||+|.+|.+.++...+..
T Consensus       386 ~------~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~  424 (474)
T KOG0194|consen  386 S------KTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKK  424 (474)
T ss_pred             C------CCHHHHHHHHHHhccCChhhccCHHHHHHHHHHHHhcc
Confidence            0      11234555666999999999999999999999855543

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9e-35  Score=323.04  Aligned_cols=236  Identities=24%  Similarity=0.349  Sum_probs=186.2

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEecc----Cc-ccccchHHHHHHHHhhcC-CCceeEEeeEEecCCeeEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV----NT-ITTSSFWPDVSQFGKLIM-HPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~----~~-~~~~~~~~e~~~~~~~~~-H~niv~l~g~~~~~~~~~lv  759 (966)
                      .....+|+|+||.||.|.+..++..||||.+...    .. ...+...+|+..+.+ ++ ||||+++++++..+..+|+|
T Consensus        20 ~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~-~~~HpnI~~l~ev~~t~~~~~iv   98 (370)
T KOG0583|consen   20 ELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRR-LRSHPNIIRLLEVFATPTKIYIV   98 (370)
T ss_pred             eeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHH-hccCCCEeEEEEEEecCCeEEEE
Confidence            3345579999999999999999999999944332    11 122334467777777 57 99999999999999999999


Q ss_pred             EEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          760 YEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      |||+.||+|.+++.   ++.+.+..+++.|++.|++|+|   +.+|+||||||+|||+|.+. ..+|++|||++....  
T Consensus        99 mEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~H---~~gi~HRDLK~ENilld~~~-~~~Kl~DFG~s~~~~~~  174 (370)
T KOG0583|consen   99 MEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYCH---SRGIVHRDLKPENILLDGNE-GNLKLSDFGLSAISPGE  174 (370)
T ss_pred             EEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH---hCCEeeCCCCHHHEEecCCC-CCEEEeccccccccCCC
Confidence            99999999999996   4888899999999999999999   66999999999999999764 668999999987541  


Q ss_pred             ----CCCcCCcccccccccCCCC-CC-CcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhc-cCccccccccc
Q 002105          835 ----SKSINSSAYVAPETKESKD-IT-EKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYS-DCHLDTWVDPF  907 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~~-~~-~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~  907 (966)
                          ...+||+.|+|||++.+.. |+ .++||||+||+||.|++|+.||+... .....    +.... .-....+++  
T Consensus       175 ~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~-~~~l~----~ki~~~~~~~p~~~~--  247 (370)
T KOG0583|consen  175 DGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSN-VPNLY----RKIRKGEFKIPSYLL--  247 (370)
T ss_pred             CCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCcc-HHHHH----HHHhcCCccCCCCcC--
Confidence                3458999999999999988 86 68999999999999999999998531 11111    11011 011111110  


Q ss_pred             ccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 002105          908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVT  944 (966)
Q Consensus       908 ~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~  944 (966)
                                 -.++..++.+|++.||.+|+|+.||.
T Consensus       248 -----------S~~~~~Li~~mL~~~P~~R~t~~~i~  273 (370)
T KOG0583|consen  248 -----------SPEARSLIEKMLVPDPSTRITLLEIL  273 (370)
T ss_pred             -----------CHHHHHHHHHHcCCCcccCCCHHHHh
Confidence                       12566788899999999999999998

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-35  Score=316.44  Aligned_cols=233  Identities=21%  Similarity=0.322  Sum_probs=181.8

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      .+|.|.|+.||+|+...+++++|||.+.+.--   ...+-...|-..+.++-.||.||+||-.|+++..+|+|+||++||
T Consensus        80 ~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLYFvLe~A~nG  159 (604)
T KOG0592|consen   80 ILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLYFVLEYAPNG  159 (604)
T ss_pred             eeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceEEEEEecCCC
Confidence            46889999999999999999999998865422   122223444455556448999999999999999999999999999


Q ss_pred             CHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----------
Q 002105          767 ELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----------  833 (966)
Q Consensus       767 ~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----------  833 (966)
                      +|.++|++   ++....+.+|.+|..||+|||   +.|||||||||+|||||+++  ++++.|||.+...          
T Consensus       160 dll~~i~K~Gsfde~caR~YAAeIldAleylH---~~GIIHRDlKPENILLd~dm--hikITDFGsAK~l~~~~~~~~~~  234 (604)
T KOG0592|consen  160 DLLDLIKKYGSFDETCARFYAAEILDALEYLH---SNGIIHRDLKPENILLDKDG--HIKITDFGSAKILSPSQKSQENP  234 (604)
T ss_pred             cHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH---hcCceeccCChhheeEcCCC--cEEEeeccccccCChhhccccCc
Confidence            99999985   788888899999999999999   66999999999999999764  6899999987531          


Q ss_pred             -------C--CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccc
Q 002105          834 -------D--SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWV  904 (966)
Q Consensus       834 -------~--~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  904 (966)
                             .  ...+||..|++||.+.....+..+|+|+||||+|+|++|++||.+...  ..+.+.+..          +
T Consensus       235 ~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~Ne--yliFqkI~~----------l  302 (604)
T KOG0592|consen  235 VDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANE--YLIFQKIQA----------L  302 (604)
T ss_pred             cCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccH--HHHHHHHHH----------h
Confidence                   1  235899999999999999999999999999999999999999986421  111111110          1


Q ss_pred             cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          905 DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       905 d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      |-.+....+   +   .+.+|+.+-+..||.+|+|..++-+
T Consensus       303 ~y~fp~~fp---~---~a~dLv~KLLv~dp~~Rlt~~qIk~  337 (604)
T KOG0592|consen  303 DYEFPEGFP---E---DARDLIKKLLVRDPSDRLTSQQIKA  337 (604)
T ss_pred             cccCCCCCC---H---HHHHHHHHHHccCccccccHHHHhh
Confidence            111222222   2   3445556677899999999987753

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-38  Score=358.69  Aligned_cols=481  Identities=30%  Similarity=0.363  Sum_probs=373.4

Q ss_pred             EEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCC-CCCCCCCCCCcEEeCCCCCC
Q 002105           66 IELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTG-PVPIGSLSRLEILDLSNNML  144 (966)
Q Consensus        66 L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~Ls~N~l  144 (966)
                      +|.+..++. .||.-+..-..++.|+++.|-+. ..|-++....-+|+.|||++|++.. ++++..+.+|+.|+++.|.+
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i   80 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI   80 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhH
Confidence            345555554 44555555556889999999876 5565555555669999999999875 66778889999999999999


Q ss_pred             CCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCc
Q 002105          145 SGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEI  224 (966)
Q Consensus       145 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l  224 (966)
                      . ..|.+..++.+|++|.|.+|.+. ..|.++..+++|++|++++|++. .+|..+..++.+..+..++|.....    +
T Consensus        81 ~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----l  153 (1081)
T KOG0618|consen   81 R-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----L  153 (1081)
T ss_pred             h-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----h
Confidence            7 57888999999999999999876 78999999999999999999986 6888888899999999998832222    2


Q ss_pred             cCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCce
Q 002105          225 GDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEI  304 (966)
Q Consensus       225 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  304 (966)
                      +... ++.+++..|.+.+.++..+.++++  .|+|++|.+.   -..+..+..|+.|....|+++...    ...++|+.
T Consensus       154 g~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~  223 (1081)
T KOG0618|consen  154 GQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPSLTA  223 (1081)
T ss_pred             cccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcchhe
Confidence            3322 788888888888888888888777  7899999876   234667788888888888876322    23467888


Q ss_pred             ecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCC
Q 002105          305 LHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSL  384 (966)
Q Consensus       305 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l  384 (966)
                      |+.+.|.++...+..  .-.+|+++++++|++++ +|++++.+.+|+.++..+|+|+ .+|..+....+|..|...+|.+
T Consensus       224 L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel  299 (1081)
T KOG0618|consen  224 LYADHNPLTTLDVHP--VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNEL  299 (1081)
T ss_pred             eeeccCcceeecccc--ccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhh
Confidence            888888887433322  12478888999998884 5688888899999999999885 6777788888888888888888


Q ss_pred             CCCCCCccccCccCceeeccccccCCcCChhhcCCCc-ccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCcc-CCC
Q 002105          385 EGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPL-VYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGK-LPD  462 (966)
Q Consensus       385 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~  462 (966)
                      + .+|.....+++|+.|+|..|+|...++..|.-+.. +..|+.+.|.+.......-..+..|+.|.+.+|.++.. .|.
T Consensus       300 ~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~  378 (1081)
T KOG0618|consen  300 E-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV  378 (1081)
T ss_pred             h-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh
Confidence            7 46666777889999999999988776666665554 77888888888765543444567788899999988864 455


Q ss_pred             CcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCc
Q 002105          463 SFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLG  542 (966)
Q Consensus       463 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  542 (966)
                      +-+...|+.|+|++|++.......+.++..|++|+||+|+|+ .+|.++..+..|++|..-+|++. ..| .+..++.|+
T Consensus       379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~  455 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLK  455 (1081)
T ss_pred             hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcce
Confidence            667788999999999887554456788888999999999987 67888889999999999999887 566 788888999


Q ss_pred             EEeCCCCcCcccC-CcccccCCCCCeeeCcCCc
Q 002105          543 QLDLSENQLSGKI-PQTLGRVASLVQVNISHNH  574 (966)
Q Consensus       543 ~LdLs~N~l~g~~-p~~l~~l~~L~~l~ls~N~  574 (966)
                      .+|+|.|+|+... |.... -+.|++||+++|.
T Consensus       456 ~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  456 VLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             EEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence            9999999988543 33332 2788999999886

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=1.6e-35  Score=297.09  Aligned_cols=249  Identities=20%  Similarity=0.303  Sum_probs=187.6

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      ++.+...|+|++|.|||++...+|+.|||||+.+...  .-.+-..+|++.+.+ ++|||+|.++++|......+||+||
T Consensus         4 YE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKq-LkH~NLVnLiEVFrrkrklhLVFE~   82 (396)
T KOG0593|consen    4 YEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQ-LKHENLVNLIEVFRRKRKLHLVFEY   82 (396)
T ss_pred             HhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHh-cccchHHHHHHHHHhcceeEEEeee
Confidence            3556678999999999999999999999999976543  223345788887777 7999999999999999999999999


Q ss_pred             cCCCCHHHHH---HcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          763 IEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       763 ~~~g~L~~~l---~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      |+.--|.+.=   +.++.....+++.|+++|+.|+|   +..||||||||+|||++.+  ..+|++|||+|....     
T Consensus        83 ~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cH---k~n~IHRDIKPENILit~~--gvvKLCDFGFAR~L~~pgd~  157 (396)
T KOG0593|consen   83 CDHTVLHELERYPNGVPSELVKKYLYQLLKAIHFCH---KNNCIHRDIKPENILITQN--GVVKLCDFGFARTLSAPGDN  157 (396)
T ss_pred             cchHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhh---hcCeecccCChhheEEecC--CcEEeccchhhHhhcCCcch
Confidence            9975554433   24888899999999999999999   5589999999999999965  458999999997543     


Q ss_pred             -CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhc------------cCcc
Q 002105          835 -SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYS------------DCHL  900 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~------------~~~~  900 (966)
                       +..+.|..|.|||.+.+ .+|+..+||||.||++.||+||++-|.+..+..... .. +....            ....
T Consensus       158 YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy-~I-~ktLG~L~prhq~iF~~N~~F  235 (396)
T KOG0593|consen  158 YTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLY-LI-RKTLGNLIPRHQSIFSSNPFF  235 (396)
T ss_pred             hhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHH-HH-HHHHcccCHHHHHHhccCCce
Confidence             22356889999998876 789999999999999999999998877654432221 11 11110            0000


Q ss_pred             cc--ccccc----ccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 002105          901 DT--WVDPF----IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVT  944 (966)
Q Consensus       901 ~~--~~d~~----~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~  944 (966)
                      ..  +.+|.    +...++..   ..-+++++..|++.||++|++-+|++
T Consensus       236 ~Gv~lP~~~~~epLe~k~p~~---s~~~ld~~k~cL~~dP~~R~sc~qll  282 (396)
T KOG0593|consen  236 HGVRLPEPEHPEPLERKYPKI---SNVLLDLLKKCLKMDPDDRLSCEQLL  282 (396)
T ss_pred             eeeecCCCCCccchhhhcccc---hHHHHHHHHHHhcCCccccccHHHHh
Confidence            00  00110    00111111   12467888999999999999998875

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-35  Score=348.18  Aligned_cols=242  Identities=25%  Similarity=0.396  Sum_probs=193.2

Q ss_pred             ccccCCCCCccEEEEEEEecCCc-----EEEEEEEecc-CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDM-----QFVVKKIIDV-NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~-----~vavk~~~~~-~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      ....+|+|.||.||+|.......     .||||++.+. +.+...+|..|...+++ ++|||||+++|+|.+....+|++
T Consensus       696 l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~-f~HpNiv~liGv~l~~~~~~i~l  774 (1025)
T KOG1095|consen  696 LLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSK-FDHPNIVSLIGVCLDSGPPLILL  774 (1025)
T ss_pred             eeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhc-CCCcceeeEEEeecCCCCcEEEe
Confidence            34557999999999999765433     4999999765 44556779988888888 69999999999999999999999


Q ss_pred             EccCCCCHHHHHHc----------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccc
Q 002105          761 EYIEGKELSEVLRN----------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA  830 (966)
Q Consensus       761 Ey~~~g~L~~~l~~----------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~  830 (966)
                      |||+||||..+|++          ++..+...+|.|||+|+.||+   +.+.|||||.++|+||+..  ..+|++|||++
T Consensus       775 eyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe---~~~fvHRDLAaRNCLL~~~--r~VKIaDFGlA  849 (1025)
T KOG1095|consen  775 EYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLE---SKHFVHRDLAARNCLLDER--RVVKIADFGLA  849 (1025)
T ss_pred             hhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHH---hCCCcCcchhhhheeeccc--CcEEEcccchh
Confidence            99999999999973          678888999999999999999   6689999999999999976  56899999999


Q ss_pred             eecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCccc
Q 002105          831 YCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLD  901 (966)
Q Consensus       831 ~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  901 (966)
                      +...        ....-...|||||.+..+.+|.|+|||||||++||++| |..||.... ..+....|    ..++++ 
T Consensus       850 rDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~-n~~v~~~~----~~ggRL-  923 (1025)
T KOG1095|consen  850 RDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRS-NFEVLLDV----LEGGRL-  923 (1025)
T ss_pred             HhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcc-hHHHHHHH----HhCCcc-
Confidence            7321        11122457999999999999999999999999999999 788886431 12222112    223322 


Q ss_pred             ccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 002105          902 TWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCF  951 (966)
Q Consensus       902 ~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~  951 (966)
                         +|  +      ..+...+.++|..||+.+|++||++..++++++.++
T Consensus       924 ---~~--P------~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~  962 (1025)
T KOG1095|consen  924 ---DP--P------SYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQDPAIS  962 (1025)
T ss_pred             ---CC--C------CCCChHHHHHHHHHccCChhhCccHHHHHhhhhhhh
Confidence               11  1      122346778999999999999999999999998743

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-36  Score=316.41  Aligned_cols=235  Identities=20%  Similarity=0.315  Sum_probs=186.1

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEecc-CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV-NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~-~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ...+|+|.||.||||.+...++.||+|.+.-. .....++..+|+..++. ++||||.++||.|..+..++++||||.||
T Consensus        18 ~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~-~~~~~it~yygsyl~g~~LwiiMey~~gG   96 (467)
T KOG0201|consen   18 LELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQ-CDSPNITEYYGSYLKGTKLWIIMEYCGGG   96 (467)
T ss_pred             chhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHh-cCcchHHhhhhheeecccHHHHHHHhcCc
Confidence            35679999999999999999999999987432 33334556778888888 79999999999999999999999999999


Q ss_pred             CHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCCC
Q 002105          767 ELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSKS  837 (966)
Q Consensus       767 ~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~~  837 (966)
                      ++.+.++.   ++.....-|..++..|+.|||   ..+.+|||||++||++..+  ..+++.|||++...      ....
T Consensus        97 sv~~lL~~~~~~~E~~i~~ilre~l~~l~ylH---~~~kiHrDIKaanil~s~~--g~vkl~DfgVa~ql~~~~~rr~tf  171 (467)
T KOG0201|consen   97 SVLDLLKSGNILDEFEIAVILREVLKGLDYLH---SEKKIHRDIKAANILLSES--GDVKLADFGVAGQLTNTVKRRKTF  171 (467)
T ss_pred             chhhhhccCCCCccceeeeehHHHHHHhhhhh---hcceecccccccceeEecc--CcEEEEecceeeeeechhhccccc
Confidence            99999973   366666678889999999999   5589999999999999876  45788899987542      2456


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      +|||.|||||++....|+.|+||||+|++.+||++|.+|+......        +..+   ....-..|.+.+.++.   
T Consensus       172 vGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPm--------rvlf---lIpk~~PP~L~~~~S~---  237 (467)
T KOG0201|consen  172 VGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPM--------RVLF---LIPKSAPPRLDGDFSP---  237 (467)
T ss_pred             cccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcc--------eEEE---eccCCCCCccccccCH---
Confidence            8999999999999999999999999999999999999998643211        0000   0111134445444442   


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         .+.+++..|++++|+.||++.++++
T Consensus       238 ---~~kEFV~~CL~k~P~~RpsA~~LLK  262 (467)
T KOG0201|consen  238 ---PFKEFVEACLDKNPEFRPSAKELLK  262 (467)
T ss_pred             ---HHHHHHHHHhhcCcccCcCHHHHhh
Confidence               2334456899999999999999875

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=2.2e-34  Score=326.57  Aligned_cols=245  Identities=19%  Similarity=0.273  Sum_probs=185.6

Q ss_pred             cccccCCCCCccEEEEEEEecC-----CcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLAN-----DMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~-----~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      .....+|+|+||.||+|+....     +..||+|++...... ....+..|+..+.++.+|||||+++|+|...+..++|
T Consensus        41 ~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~~~lv  120 (374)
T cd05106          41 QFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGPVLVI  120 (374)
T ss_pred             eehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCCeEEe
Confidence            3445679999999999985433     357999988643322 2344677888777743899999999999999999999


Q ss_pred             EEccCCCCHHHHHHc-----------------------------------------------------------------
Q 002105          760 YEYIEGKELSEVLRN-----------------------------------------------------------------  774 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~-----------------------------------------------------------------  774 (966)
                      ||||++|+|.++++.                                                                 
T Consensus       121 ~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (374)
T cd05106         121 TEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSKDE  200 (374)
T ss_pred             HhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccccccccccccch
Confidence            999999999998842                                                                 


Q ss_pred             --------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC--------CCc
Q 002105          775 --------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--------KSI  838 (966)
Q Consensus       775 --------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~--------~~~  838 (966)
                              ++|.+..+++.||++||+|||   +.+|+||||||+||+++++  ..++++|||++.....        ...
T Consensus       201 ~~~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~giiHrDLkp~Nil~~~~--~~~kL~DfGla~~~~~~~~~~~~~~~~  275 (374)
T cd05106         201 EDTEDSWPLDLDDLLRFSSQVAQGMDFLA---SKNCIHRDVAARNVLLTDG--RVAKICDFGLARDIMNDSNYVVKGNAR  275 (374)
T ss_pred             hccCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCEEeccCchheEEEeCC--CeEEEeeceeeeeccCCcceeeccCCC
Confidence                    577888999999999999999   5699999999999999864  4578899998754211        122


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      +++.|||||++....++.++|||||||++|||++ |+.||....... .......    ..     ..+......     
T Consensus       276 ~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~-~~~~~~~----~~-----~~~~~~~~~-----  340 (374)
T cd05106         276 LPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNS-KFYKMVK----RG-----YQMSRPDFA-----  340 (374)
T ss_pred             CccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccH-HHHHHHH----cc-----cCccCCCCC-----
Confidence            4567999999998899999999999999999997 999987542211 1111111    00     011011111     


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVTKTLESCF  951 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~  951 (966)
                       ..++.+++.+||+.||++|||+.||+++|++.+
T Consensus       341 -~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~~  373 (374)
T cd05106         341 -PPEIYSIMKMCWNLEPTERPTFSQISQLIQRQL  373 (374)
T ss_pred             -CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHh
Confidence             135667888999999999999999999999843

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=1.8e-34  Score=318.98  Aligned_cols=245  Identities=22%  Similarity=0.338  Sum_probs=182.8

Q ss_pred             ccCCCCCccEEEEEEEec----------------CCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEe
Q 002105          689 TSRGKKGVSSSYKVRSLA----------------NDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCR  751 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~----------------~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~  751 (966)
                      ..+|+||||.||++....                .+..||+|.+..... ....+|.+|+..+.+ ++|||||+++|++.
T Consensus        11 ~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~   89 (304)
T cd05096          11 EKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSR-LKDPNIIRLLGVCV   89 (304)
T ss_pred             eEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhh-cCCCCeeEEEEEEe
Confidence            346999999999997522                234689998754322 223468888888877 69999999999999


Q ss_pred             cCCeeEEEEEccCCCCHHHHHHc----------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCC
Q 002105          752 SEKAAYLVYEYIEGKELSEVLRN----------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSP  809 (966)
Q Consensus       752 ~~~~~~lv~Ey~~~g~L~~~l~~----------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~  809 (966)
                      +.+..++||||+++|+|.+++..                      ++|....+++.||+.||+|||   +.+|+||||||
T Consensus        90 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~ivH~dlkp  166 (304)
T cd05096          90 DEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLS---SLNFVHRDLAT  166 (304)
T ss_pred             cCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH---HCCccccCcch
Confidence            99999999999999999998842                      577888999999999999999   55899999999


Q ss_pred             CcEEEcCCCCceEEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc--CCCCCCC
Q 002105          810 GKVIVDGKDEPHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT--GKSPADA  879 (966)
Q Consensus       810 ~Nill~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t--g~~p~~~  879 (966)
                      +||+++.+  ..++++|||++....        ....++..|||||++....++.++|||||||++|||++  |..|+..
T Consensus       167 ~Nill~~~--~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~  244 (304)
T cd05096         167 RNCLVGEN--LTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGE  244 (304)
T ss_pred             hheEEcCC--ccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCc
Confidence            99999965  457899999875421        12234678999999988889999999999999999987  4566654


Q ss_pred             CCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          880 DFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       880 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      ..  ...+.+++..........  ..+......      ...+.+++.+||+.||++||||.||++.|++
T Consensus       245 ~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~li~~cl~~~p~~RPs~~~i~~~l~~  304 (304)
T cd05096         245 LT--DEQVIENAGEFFRDQGRQ--VYLFRPPPC------PQGLYELMLQCWSRDCRERPSFSDIHAFLTE  304 (304)
T ss_pred             CC--HHHHHHHHHHHhhhcccc--ccccCCCCC------CHHHHHHHHHHccCCchhCcCHHHHHHHHhC
Confidence            21  122223332222111111  001001111      2356778899999999999999999998863

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=3.1e-34  Score=325.67  Aligned_cols=242  Identities=19%  Similarity=0.285  Sum_probs=184.6

Q ss_pred             ccccCCCCCccEEEEEEE-----ecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRS-----LANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~-----~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      ....+|+||||.||+|..     ..++..||||++.... ....+.+.+|+..+.++-+|||||+++|+|..++..++||
T Consensus        39 ~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~~~lv~  118 (375)
T cd05104          39 FGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGPTLVIT  118 (375)
T ss_pred             hhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCcceeee
Confidence            345679999999999864     2345689999885432 2223457788887777338999999999999999999999


Q ss_pred             EccCCCCHHHHHHc------------------------------------------------------------------
Q 002105          761 EYIEGKELSEVLRN------------------------------------------------------------------  774 (966)
Q Consensus       761 Ey~~~g~L~~~l~~------------------------------------------------------------------  774 (966)
                      |||++|+|.++++.                                                                  
T Consensus       119 E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (375)
T cd05104         119 EYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYIDQD  198 (375)
T ss_pred             hhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccceecccc
Confidence            99999999998852                                                                  


Q ss_pred             ------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-------
Q 002105          775 ------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-------  835 (966)
Q Consensus       775 ------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-------  835 (966)
                                  ++|....+++.||++||+|||   +.+|+||||||+||+++.+.  .++++|||++.....       
T Consensus       199 ~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nill~~~~--~~kl~DfG~a~~~~~~~~~~~~  273 (375)
T cd05104         199 VTSEILEEDELALDTEDLLSFSYQVAKGMSFLA---SKNCIHRDLAARNILLTHGR--ITKICDFGLARDIRNDSNYVVK  273 (375)
T ss_pred             cHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCchhhEEEECCC--cEEEecCccceeccCccccccc
Confidence                        578888999999999999999   56999999999999998654  468899998764221       


Q ss_pred             -CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          836 -KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       836 -~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                       ...++..|+|||+..+..++.++|||||||++|||+| |..||...... ....++.....   ..   ..|   ... 
T Consensus       274 ~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~-~~~~~~~~~~~---~~---~~~---~~~-  342 (375)
T cd05104         274 GNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVD-SKFYKMIKEGY---RM---LSP---ECA-  342 (375)
T ss_pred             CCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCch-HHHHHHHHhCc---cC---CCC---CCC-
Confidence             1223567999999999999999999999999999998 88888653221 12222222110   00   001   111 


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                           ..++.+++.+||+.||++||+|+||+++|++
T Consensus       343 -----~~~l~~li~~cl~~dP~~RPs~~eil~~l~~  373 (375)
T cd05104         343 -----PSEMYDIMKSCWDADPLKRPTFKQIVQLIEQ  373 (375)
T ss_pred             -----CHHHHHHHHHHccCChhHCcCHHHHHHHHHh
Confidence                 1256678899999999999999999999987

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.8e-35  Score=323.22  Aligned_cols=233  Identities=22%  Similarity=0.287  Sum_probs=181.5

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +|+|++|.||+++...++..||+|++....   ......+..|+..+.+ ++|||||++++++..++..|+||||+++|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~   79 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQ-VNCPFIVPLKFSFQSPEKLYLVLAFINGGE   79 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHh-CCCCcEeceeeEEecCCeEEEEEcCCCCCc
Confidence            488999999999998889999999986432   2223346677777777 699999999999999999999999999999


Q ss_pred             HHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCCCc
Q 002105          768 LSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSKSI  838 (966)
Q Consensus       768 L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~~~  838 (966)
                      |.+++.   .+++..+..++.|+++||+|||   +.+|+||||||+||+++.+.  .++++|||++...      .....
T Consensus        80 L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~HrDlkp~Nili~~~~--~~kl~Dfg~~~~~~~~~~~~~~~~  154 (312)
T cd05585          80 LFHHLQREGRFDLSRARFYTAELLCALENLH---KFNVIYRDLKPENILLDYQG--HIALCDFGLCKLNMKDDDKTNTFC  154 (312)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHeEECCCC--cEEEEECcccccCccCCCcccccc
Confidence            999985   3889999999999999999999   56899999999999998654  4788999987532      12346


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      ||+.|+|||++.+..++.++|||||||++|||+||+.||....  ..   +.........       +.+....+     
T Consensus       155 gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~--~~---~~~~~~~~~~-------~~~~~~~~-----  217 (312)
T cd05585         155 GTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDEN--VN---EMYRKILQEP-------LRFPDGFD-----  217 (312)
T ss_pred             CCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCC--HH---HHHHHHHcCC-------CCCCCcCC-----
Confidence            8999999999999999999999999999999999999987531  11   1112111110       01111111     


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVTKTL  947 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~~~L  947 (966)
                       .++.+++.+|++.||++||++.++.+.|
T Consensus       218 -~~~~~li~~~L~~dp~~R~~~~~~~e~l  245 (312)
T cd05585         218 -RDAKDLLIGLLSRDPTRRLGYNGAQEIK  245 (312)
T ss_pred             -HHHHHHHHHHcCCCHHHcCCCCCHHHHH
Confidence             2456677899999999998754444443

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=4.8e-34  Score=312.28  Aligned_cols=238  Identities=19%  Similarity=0.237  Sum_probs=183.6

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ...+|+|++|.||++....+|..||+|++.....   .....+.+|+..+.+ ++|||||++++++.+++..++||||++
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~-l~~~~iv~~~~~~~~~~~~~lv~e~~~   83 (285)
T cd05631           5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEK-VNSRFVVSLAYAYETKDALCLVLTIMN   83 (285)
T ss_pred             EEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHh-cCCCcEEEEEEEEccCCeEEEEEEecC
Confidence            3457999999999999989999999998864321   122346677777777 699999999999999999999999999


Q ss_pred             CCCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          765 GKELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       765 ~g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      +|+|.+++.     .+++..+..++.|++.||+|||   +.+|+||||||+||+++++.  .++++|||++....     
T Consensus        84 ~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiH~dikp~Nill~~~~--~~kl~Dfg~~~~~~~~~~~  158 (285)
T cd05631          84 GGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQ---RERIVYRDLKPENILLDDRG--HIRISDLGLAVQIPEGETV  158 (285)
T ss_pred             CCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHEEECCCC--CEEEeeCCCcEEcCCCCee
Confidence            999998874     3789999999999999999999   56999999999999998654  47889999876421     


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ....||+.|||||++.+..++.++|||||||++|||++|+.||....... ...+.... ......      ......  
T Consensus       159 ~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~-~~~~~~~~-~~~~~~------~~~~~~--  228 (285)
T cd05631         159 RGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERV-KREEVDRR-VKEDQE------EYSEKF--  228 (285)
T ss_pred             cCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcch-hHHHHHHH-hhcccc------cCCccC--
Confidence            23468999999999999999999999999999999999999997542211 11011111 100000      011111  


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPC-----ASDVTK  945 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt-----~~~v~~  945 (966)
                       .   .++.+++.+|++.||++||+     ++|+.+
T Consensus       229 -s---~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~  260 (285)
T cd05631         229 -S---EDAKSICRMLLTKNPKERLGCRGNGAAGVKQ  260 (285)
T ss_pred             -C---HHHHHHHHHHhhcCHHHhcCCCCCCHHHHhc
Confidence             1   24566788999999999997     666664

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=5.5e-35  Score=314.51  Aligned_cols=231  Identities=24%  Similarity=0.362  Sum_probs=185.4

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc--cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ..+|+|.||.||||+.+.+.+.||+|.+.+....  +-+...+|++.+.+ ++|||||.++++|+...+.|+|.||+.| 
T Consensus         8 e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~-lkHpniv~m~esfEt~~~~~vVte~a~g-   85 (808)
T KOG0597|consen    8 EMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRS-LKHPNIVEMLESFETSAHLWVVTEYAVG-   85 (808)
T ss_pred             HHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHh-cCCcchhhHHHhhcccceEEEEehhhhh-
Confidence            3468899999999999989999999988654322  22346788888877 7999999999999999999999999997 


Q ss_pred             CHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CCC
Q 002105          767 ELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SKS  837 (966)
Q Consensus       767 ~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~~  837 (966)
                      +|..+|.   .++++....|+.++..||.|||   +.+|+|||+||.|||++..+  .+|+++||+++...      +..
T Consensus        86 ~L~~il~~d~~lpEe~v~~~a~~LVsaL~yLh---s~rilhrd~kPqniLl~~~~--~~KlcdFg~Ar~m~~~t~vltsi  160 (808)
T KOG0597|consen   86 DLFTILEQDGKLPEEQVRAIAYDLVSALYYLH---SNRILHRDMKPQNILLEKGG--TLKLCDFGLARAMSTNTSVLTSI  160 (808)
T ss_pred             hHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---hcCcccccCCcceeeecCCC--ceeechhhhhhhcccCceeeeec
Confidence            9999996   4999999999999999999999   56999999999999999654  57999999997643      234


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      .|||.|||||...+.+|+..+|.||+|||+||+.+|++||.+.     .+.+.++....+        |.....  ....
T Consensus       161 kGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~-----si~~Lv~~I~~d--------~v~~p~--~~S~  225 (808)
T KOG0597|consen  161 KGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYAR-----SITQLVKSILKD--------PVKPPS--TASS  225 (808)
T ss_pred             cCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHH-----HHHHHHHHHhcC--------CCCCcc--cccH
Confidence            7999999999999999999999999999999999999999743     233333332221        111110  1122


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVT  944 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~  944 (966)
                         .+..+...-+.+||.+|-|..+++
T Consensus       226 ---~f~nfl~gLL~kdP~~RltW~~Ll  249 (808)
T KOG0597|consen  226 ---SFVNFLQGLLIKDPAQRLTWTDLL  249 (808)
T ss_pred             ---HHHHHHHHHhhcChhhcccHHHHh
Confidence               334444566789999999998875

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7e-35  Score=320.50  Aligned_cols=233  Identities=24%  Similarity=0.364  Sum_probs=185.0

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccc---cchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITT---SSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~---~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ..|+|+.|.|-.|++..+|+.+|||.+........   ....+| ..++|++.||||+++|+++++..++|+|.||+++|
T Consensus        19 TLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerE-IviMkLi~HpnVl~LydVwe~~~~lylvlEyv~gG   97 (786)
T KOG0588|consen   19 TLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIERE-IVIMKLIEHPNVLRLYDVWENKQHLYLVLEYVPGG   97 (786)
T ss_pred             cccCCCCceehhhhcccccceeEEEeeccccccccccccchhhh-hHHHHHhcCCCeeeeeeeeccCceEEEEEEecCCc
Confidence            35899999999999999999999998876533222   223344 46788899999999999999999999999999999


Q ss_pred             CHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----CCCc
Q 002105          767 ELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SKSI  838 (966)
Q Consensus       767 ~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----~~~~  838 (966)
                      .|++++.   .++..+..+++.||..|+.|+|+   .+|+|||+||+|+|||....  ||++|||.|....     ...+
T Consensus        98 ELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~---~~icHRDLKpENlLLd~~~n--IKIADFGMAsLe~~gklLeTSC  172 (786)
T KOG0588|consen   98 ELFDYLVRKGPLPEREAAHFFRQILDGVSYCHA---FNICHRDLKPENLLLDVKNN--IKIADFGMASLEVPGKLLETSC  172 (786)
T ss_pred             hhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhh---hcceeccCCchhhhhhcccC--EeeeccceeecccCCccccccC
Confidence            9999985   48999999999999999999995   48999999999999997665  9999999986532     4568


Q ss_pred             CCcccccccccCCCCCC-CcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          839 NSSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~-~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      |+|.|.|||++.+.+|+ .++||||.|||||.|+||+.||+.+. ....+ ..++.    +..+  + |   ...+   .
T Consensus       173 GSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdN-ir~LL-lKV~~----G~f~--M-P---s~Is---~  237 (786)
T KOG0588|consen  173 GSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDN-IRVLL-LKVQR----GVFE--M-P---SNIS---S  237 (786)
T ss_pred             CCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCcc-HHHHH-HHHHc----Cccc--C-C---CcCC---H
Confidence            99999999999999995 69999999999999999999998541 11222 22221    1111  0 1   1111   2


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                         ++.++..+.+..||++|-|++||.+-
T Consensus       238 ---eaQdLLr~ml~VDp~~RiT~~eI~kH  263 (786)
T KOG0588|consen  238 ---EAQDLLRRMLDVDPSTRITTEEILKH  263 (786)
T ss_pred             ---HHHHHHHHHhccCccccccHHHHhhC
Confidence               33445566778999999999999864

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.3e-34  Score=310.09  Aligned_cols=191  Identities=23%  Similarity=0.348  Sum_probs=161.8

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecC--CeeEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--KAAYLVY  760 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--~~~~lv~  760 (966)
                      ++.+..+|+|.||.||||+...+|+.||+||+.-..  ........+|+..+.+ +.|||||+|.|...+.  +.+|||+
T Consensus       119 feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~-l~HpNIikL~eivt~~~~~siYlVF  197 (560)
T KOG0600|consen  119 FEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRR-LDHPNIIKLEEIVTSKLSGSIYLVF  197 (560)
T ss_pred             HHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHh-cCCCcccceeeEEEecCCceEEEEE
Confidence            456677899999999999999999999999996443  3333445677777777 7999999999998876  6899999


Q ss_pred             EccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          761 EYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       761 Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      |||++ ||..++.    +++..+...+..|++.||+|+|   ..+|+|||||.+|||||.++  .+|++|||++...+  
T Consensus       198 eYMdh-DL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH---~~gvlHRDIK~SNiLidn~G--~LKiaDFGLAr~y~~~  271 (560)
T KOG0600|consen  198 EYMDH-DLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCH---SRGVLHRDIKGSNILIDNNG--VLKIADFGLARFYTPS  271 (560)
T ss_pred             ecccc-hhhhhhcCCCcccChHHHHHHHHHHHHHHHHHh---hcCeeeccccccceEEcCCC--CEEeccccceeeccCC
Confidence            99995 8888886    4899999999999999999999   67999999999999999654  57999999997432  


Q ss_pred             -----CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCC
Q 002105          835 -----SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFG  882 (966)
Q Consensus       835 -----~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~  882 (966)
                           +..+-|..|.|||.+.+ ..|+.++|+||.||||.||++|++.+.+...
T Consensus       272 ~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tE  325 (560)
T KOG0600|consen  272 GSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTE  325 (560)
T ss_pred             CCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccH
Confidence                 22345778999998765 5799999999999999999999999987543

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=3.3e-34  Score=319.28  Aligned_cols=231  Identities=23%  Similarity=0.288  Sum_probs=181.9

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +|+|++|.||+++...+|..||+|++.....   .....+..|+..+.+ ++||||+++++++..++..|+||||+++|+
T Consensus         3 lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~-l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~   81 (323)
T cd05571           3 LGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQN-TRHPFLTALKYSFQTHDRLCFVMEYANGGE   81 (323)
T ss_pred             eeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHh-CCCCCCCCEEEEEEcCCEEEEEEeCCCCCc
Confidence            6889999999999988999999999864321   122345667777766 799999999999999999999999999999


Q ss_pred             HHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCCCc
Q 002105          768 LSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSKSI  838 (966)
Q Consensus       768 L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~~~  838 (966)
                      |.+++.   .+++.....++.||+.||+|||   +.+|+||||||+||+++.+.  .++++|||++...      .....
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~ivHrDlkp~NIll~~~~--~~kl~DfG~a~~~~~~~~~~~~~~  156 (323)
T cd05571          82 LFFHLSRERVFSEDRARFYGAEIVSALGYLH---SCDVVYRDLKLENLMLDKDG--HIKITDFGLCKEGISDGATMKTFC  156 (323)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHEEECCCC--CEEEeeCCCCcccccCCCccccee
Confidence            999985   3789999999999999999999   55999999999999998654  4789999987542      12246


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      ||+.|||||++.+..++.++|||||||++|||+||+.||....  .+...+...   ..       ++.+....+     
T Consensus       157 gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~--~~~~~~~~~---~~-------~~~~p~~~~-----  219 (323)
T cd05571         157 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD--HEKLFELIL---ME-------EIRFPRTLS-----  219 (323)
T ss_pred             cCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCC--HHHHHHHHH---cC-------CCCCCCCCC-----
Confidence            8999999999999999999999999999999999999986531  121112111   10       011111111     


Q ss_pred             HHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARP-----CASDVTK  945 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RP-----t~~~v~~  945 (966)
                       .++.+++.+|++.||++||     ++.++++
T Consensus       220 -~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~  250 (323)
T cd05571         220 -PEAKSLLAGLLKKDPKQRLGGGPEDAKEIME  250 (323)
T ss_pred             -HHHHHHHHHHccCCHHHcCCCCCCCHHHHHc
Confidence             2456677899999999999     7887763

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1e-33  Score=331.13  Aligned_cols=237  Identities=20%  Similarity=0.246  Sum_probs=182.8

Q ss_pred             cccccCCCCCccEEEEEEEecC-CcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLAN-DMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~-~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .....+|+||+|.||+|....+ +..||+|++..........+..|+..+.+ ++|||||+++++|..++..|+||||++
T Consensus        70 ~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~-l~Hpniv~~~~~~~~~~~~~lv~E~~~  148 (478)
T PTZ00267         70 VLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAA-CDHFGIVKHFDDFKSDDKLLLIMEYGS  148 (478)
T ss_pred             EEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHh-CCCCCEeEEEEEEEECCEEEEEEECCC
Confidence            3344568899999999998666 67788887644333333445667777766 799999999999999999999999999


Q ss_pred             CCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---
Q 002105          765 GKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       765 ~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---  834 (966)
                      +|+|.++++       .+++.+...++.||+.||+|||   ..+|+||||||+|||++.+.  .++++|||++....   
T Consensus       149 gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~~~~--~~kL~DFgla~~~~~~~  223 (478)
T PTZ00267        149 GGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVH---SRKMMHRDLKSANIFLMPTG--IIKLGDFGFSKQYSDSV  223 (478)
T ss_pred             CCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCcCHHhEEECCCC--cEEEEeCcCceecCCcc
Confidence            999998875       2778888899999999999999   56999999999999999654  57899999886432   


Q ss_pred             -----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccccc
Q 002105          835 -----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       835 -----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                           ...+||++|||||++.+..++.++|||||||++|||+||+.||....  ..   +.......+.     .+|. .
T Consensus       224 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~--~~---~~~~~~~~~~-----~~~~-~  292 (478)
T PTZ00267        224 SLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPS--QR---EIMQQVLYGK-----YDPF-P  292 (478)
T ss_pred             ccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC--HH---HHHHHHHhCC-----CCCC-C
Confidence                 22358999999999999999999999999999999999999986531  11   1111111111     1111 1


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ...+      .++.+++.+|++.+|++||++++++.
T Consensus       293 ~~~s------~~~~~li~~~L~~dP~~Rps~~~~l~  322 (478)
T PTZ00267        293 CPVS------SGMKALLDPLLSKNPALRPTTQQLLH  322 (478)
T ss_pred             ccCC------HHHHHHHHHHhccChhhCcCHHHHHh
Confidence            1111      24667788999999999999998863

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=1.2e-33  Score=321.59  Aligned_cols=243  Identities=19%  Similarity=0.284  Sum_probs=185.3

Q ss_pred             ccCCCCCccEEEEEEEecC-----CcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          689 TSRGKKGVSSSYKVRSLAN-----DMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~-----~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      ..+|+||||.||+|.....     +..||||++..... ...+.|..|+..+.++-.|||||+++|+|.+.+..|+||||
T Consensus        43 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~~~lv~Ey  122 (400)
T cd05105          43 RILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEY  122 (400)
T ss_pred             heecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCCceEEEEEe
Confidence            4579999999999986322     34699998864322 22346888998888843499999999999999999999999


Q ss_pred             cCCCCHHHHHHc--------------------------------------------------------------------
Q 002105          763 IEGKELSEVLRN--------------------------------------------------------------------  774 (966)
Q Consensus       763 ~~~g~L~~~l~~--------------------------------------------------------------------  774 (966)
                      |++|+|.++++.                                                                    
T Consensus       123 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (400)
T cd05105         123 CFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIKEASKYSD  202 (400)
T ss_pred             cCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhhhhhhhhh
Confidence            999999988742                                                                    


Q ss_pred             -------------------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEE
Q 002105          775 -------------------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR  823 (966)
Q Consensus       775 -------------------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~  823 (966)
                                                     ++|..+.+++.|+++||+|||   ..+|+||||||+||+++.+.  .++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivH~dikp~Nill~~~~--~~k  277 (400)
T cd05105         203 IQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLA---SKNCVHRDLAARNVLLAQGK--IVK  277 (400)
T ss_pred             cccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChHhEEEeCCC--EEE
Confidence                                           567778899999999999999   56899999999999998654  578


Q ss_pred             EeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHh
Q 002105          824 LSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYC  894 (966)
Q Consensus       824 ~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~  894 (966)
                      ++|||++....        ....+++.|||||++.+..++.++|||||||++|||++ |..||...... ........  
T Consensus       278 L~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~-~~~~~~~~--  354 (400)
T cd05105         278 ICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVD-STFYNKIK--  354 (400)
T ss_pred             EEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchh-HHHHHHHh--
Confidence            89999875421        12245678999999998899999999999999999997 99998643211 11111111  


Q ss_pred             hccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          895 YSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       895 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                       ....      +.....      ...++.+++.+||+.||++||++.+|+++|++.++
T Consensus       355 -~~~~------~~~~~~------~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~~  399 (400)
T cd05105         355 -SGYR------MAKPDH------ATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLLP  399 (400)
T ss_pred             -cCCC------CCCCcc------CCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHcC
Confidence             1100      001111      12356778899999999999999999999998544

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=9.6e-34  Score=306.69  Aligned_cols=239  Identities=18%  Similarity=0.263  Sum_probs=183.8

Q ss_pred             cccCCCCCccEEEEEEEe---cCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          688 LTSRGKKGVSSSYKVRSL---ANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~---~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ...+|+|+||.||+|...   ..+..||+|.+..... .....|.+|+..+.+ ++|||||+++|++..++..++||||+
T Consensus        10 ~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~   88 (266)
T cd05064          10 ERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQ-FDHSNIVRLEGVITRGNTMMIVTEYM   88 (266)
T ss_pred             eeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhc-CCCCCcCeEEEEEecCCCcEEEEEeC
Confidence            345789999999999764   3456889998764322 223457888888877 69999999999999999999999999


Q ss_pred             CCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          764 EGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       764 ~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      ++|+|.++++    .++|..++.++.|++.||+|||   ..+++||||||+||+++.+.  .++++++|......     
T Consensus        89 ~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH---~~~iiH~dikp~nili~~~~--~~~l~dfg~~~~~~~~~~~  163 (266)
T cd05064          89 SNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLS---EMGYVHKGLAAHKVLVNSDL--VCKISGFRRLQEDKSEAIY  163 (266)
T ss_pred             CCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeeccccHhhEEEcCCC--cEEECCCcccccccccchh
Confidence            9999999986    3789999999999999999999   56899999999999998754  45778888654321     


Q ss_pred             --CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCC
Q 002105          835 --SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH  911 (966)
Q Consensus       835 --~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  911 (966)
                        ....++..|+|||+..+..++.++|||||||++||+++ |+.||.....  ....+...    +...     +.....
T Consensus       164 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~--~~~~~~~~----~~~~-----~~~~~~  232 (266)
T cd05064         164 TTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSG--QDVIKAVE----DGFR-----LPAPRN  232 (266)
T ss_pred             cccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCH--HHHHHHHH----CCCC-----CCCCCC
Confidence              11234568999999999999999999999999999775 9999865321  11112111    1100     011111


Q ss_pred             CcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          912 VSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       912 ~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      +      ...+.+++..||+.+|++||+++|+.+.|++
T Consensus       233 ~------~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~  264 (266)
T cd05064         233 C------PNLLHQLMLDCWQKERGERPRFSQIHSILSK  264 (266)
T ss_pred             C------CHHHHHHHHHHcCCCchhCCCHHHHHHHHHh
Confidence            1      2356678889999999999999999999976

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.1e-33  Score=307.41  Aligned_cols=236  Identities=21%  Similarity=0.395  Sum_probs=177.1

Q ss_pred             cCCCCCccEEEEEEEecC------------------------CcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeE
Q 002105          690 SRGKKGVSSSYKVRSLAN------------------------DMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVR  745 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~------------------------~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~  745 (966)
                      .+|+|+||.||+|....+                        +..||+|.+.........+|..|+..+.+ ++|||||+
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~-l~h~niv~   80 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQ-VSHIHLAF   80 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhc-CCCCCeee
Confidence            368999999999985322                        13577877754333233456666665555 79999999


Q ss_pred             EeeEEecCCeeEEEEEccCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC---
Q 002105          746 LHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD---  818 (966)
Q Consensus       746 l~g~~~~~~~~~lv~Ey~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~---  818 (966)
                      ++|+|.+++..++||||+++|+|..+++.    +++..+.+++.||++||+|||   +.+|+||||||+||+++...   
T Consensus        81 ~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~iiH~dlkp~Nill~~~~~~~  157 (274)
T cd05076          81 VHGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLE---DKNLVHGNVCAKNILLARLGLAE  157 (274)
T ss_pred             EEEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---cCCccCCCCCcccEEEeccCccc
Confidence            99999999999999999999999999853    789999999999999999999   56999999999999997532   


Q ss_pred             --CceEEEeccccceec--CCCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHH-HcCCCCCCCCCCchhhHHHHHH
Q 002105          819 --EPHLRLSVPGLAYCT--DSKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDL-LTGKSPADADFGVHESIVEWAR  892 (966)
Q Consensus       819 --~~~~~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el-~tg~~p~~~~~~~~~~~~~~~~  892 (966)
                        .+.+++.++|.+...  .....++..|+|||++.+ ..++.++|||||||++||+ ++|+.|+.....  .....+..
T Consensus       158 ~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~  235 (274)
T cd05076         158 GTSPFIKLSDPGVSFTALSREERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTP--SEKERFYE  235 (274)
T ss_pred             CccceeeecCCccccccccccccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccCh--HHHHHHHH
Confidence              345788899876432  223456788999998865 5689999999999999999 579999864321  11111111


Q ss_pred             HhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          893 YCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       893 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                      .   ..     .   .....      ..++.+++.+||+.+|++||+|.+|++.|.
T Consensus       236 ~---~~-----~---~~~~~------~~~~~~li~~cl~~~p~~Rps~~~il~~L~  274 (274)
T cd05076         236 K---KH-----R---LPEPS------CKELATLISQCLTYEPTQRPSFRTILRDLT  274 (274)
T ss_pred             h---cc-----C---CCCCC------ChHHHHHHHHHcccChhhCcCHHHHHHhhC
Confidence            0   00     0   00001      124677888999999999999999998873

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=1e-33  Score=314.15  Aligned_cols=232  Identities=19%  Similarity=0.308  Sum_probs=182.0

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      .+|+|++|.||+|+...++..||||.+....   ....+.+..|+..+.+..+||||+++++++.+++..|+||||+++|
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~g   81 (316)
T cd05619           2 MLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNGG   81 (316)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCCC
Confidence            3689999999999998889999999986532   1223345667777766569999999999999999999999999999


Q ss_pred             CHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCCC
Q 002105          767 ELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSKS  837 (966)
Q Consensus       767 ~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~~  837 (966)
                      +|.++++   .+++.+...++.|++.||+|||   ..+|+||||||+||+++.+.  .++++|||++...      ....
T Consensus        82 ~L~~~l~~~~~~~~~~~~~~~~qi~~al~~LH---~~~ivHrdikp~Nil~~~~~--~~kl~Dfg~~~~~~~~~~~~~~~  156 (316)
T cd05619          82 DLMFHIQSCHKFDLPRATFYAAEIICGLQFLH---SKGIVYRDLKLDNILLDTDG--HIKIADFGMCKENMLGDAKTCTF  156 (316)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHEEECCCC--CEEEccCCcceECCCCCCceeee
Confidence            9999986   3889999999999999999999   56999999999999998654  5789999987542      1223


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      .||+.|+|||++.+..++.++|||||||++|||+||+.||....  .....+.+..          ..+......+    
T Consensus       157 ~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~--~~~~~~~i~~----------~~~~~~~~~~----  220 (316)
T cd05619         157 CGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHD--EEELFQSIRM----------DNPCYPRWLT----  220 (316)
T ss_pred             cCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCC--HHHHHHHHHh----------CCCCCCccCC----
Confidence            58899999999999999999999999999999999999987531  1212122111          0111111111    


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHH-HHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCAS-DVT  944 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~-~v~  944 (966)
                        .++.+++.+|++.||++||++. ++.
T Consensus       221 --~~~~~li~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05619         221 --REAKDILVKLFVREPERRLGVKGDIR  246 (316)
T ss_pred             --HHHHHHHHHHhccCHhhcCCChHHHH
Confidence              2455677899999999999997 553

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=1.3e-33  Score=313.73  Aligned_cols=247  Identities=17%  Similarity=0.288  Sum_probs=187.6

Q ss_pred             cccccccCCCCCccEEEEEEEecCCcE----EEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEE
Q 002105          684 TEENLTSRGKKGVSSSYKVRSLANDMQ----FVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL  758 (966)
Q Consensus       684 ~~~~~~~~g~~g~~~vy~~~~~~~~~~----vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~l  758 (966)
                      +......+|+|++|.||+|+...++..    ||+|++..... ...+++..|+..+.+ ++|||||+++|+|..+ ..++
T Consensus         8 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~-l~h~niv~~~g~~~~~-~~~~   85 (316)
T cd05108           8 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMAS-VDNPHVCRLLGICLTS-TVQL   85 (316)
T ss_pred             hceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHh-CCCCCCCeEEEEEcCC-Ccee
Confidence            345566789999999999997666654    78888754322 233457777776666 7999999999999865 5789


Q ss_pred             EEEccCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          759 VYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      |+||+++|+|.++++.    +++....+++.||+.||+|||   +.+|+||||||+||+++.+.  .++++|||++....
T Consensus        86 v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~iiH~dlkp~Nill~~~~--~~kl~DfG~a~~~~  160 (316)
T cd05108          86 ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE---ERRLVHRDLAARNVLVKTPQ--HVKITDFGLAKLLG  160 (316)
T ss_pred             eeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH---hcCeeccccchhheEecCCC--cEEEcccccccccc
Confidence            9999999999999863    789999999999999999999   56899999999999998654  47899999876422


Q ss_pred             C--------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCccccccc
Q 002105          835 S--------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVD  905 (966)
Q Consensus       835 ~--------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  905 (966)
                      .        ...++..|+|||+..+..++.++|||||||++|||+| |+.|+.+..  ...+.++..   .....   ..
T Consensus       161 ~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~--~~~~~~~~~---~~~~~---~~  232 (316)
T cd05108         161 ADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP--ASEISSILE---KGERL---PQ  232 (316)
T ss_pred             CCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC--HHHHHHHHh---CCCCC---CC
Confidence            1        1223567999999999999999999999999999998 999986531  111111111   11111   11


Q ss_pred             ccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 002105          906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS  954 (966)
Q Consensus       906 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~  954 (966)
                      |   ..+      ..++.+++..||+.+|++||+|.+++..+.+..+.+
T Consensus       233 ~---~~~------~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~~~  272 (316)
T cd05108         233 P---PIC------TIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDP  272 (316)
T ss_pred             C---CCC------CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHcCC
Confidence            1   111      135677889999999999999999999999865543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=1.4e-33  Score=315.48  Aligned_cols=190  Identities=21%  Similarity=0.336  Sum_probs=161.9

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ++.+..+|+|++|.||+++...+|..+|+|.+.... ....+.+.+|+..+.+ ++|||||++++++..++..++||||+
T Consensus         7 y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~   85 (331)
T cd06649           7 FERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHE-CNSPYIVGFYGAFYSDGEISICMEHM   85 (331)
T ss_pred             ceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHH-CCCCCCCeEEEEEEECCEEEEEeecC
Confidence            345566799999999999998889999998875432 2223457888888877 69999999999999999999999999


Q ss_pred             CCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----CCC
Q 002105          764 EGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----DSK  836 (966)
Q Consensus       764 ~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----~~~  836 (966)
                      ++|+|.++++.   +++.....++.|++.||+|||+.  .+|+||||||+||+++.+.  .++++|||++...    ...
T Consensus        86 ~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~--~~ivH~dlkp~Nil~~~~~--~~kl~Dfg~~~~~~~~~~~~  161 (331)
T cd06649          86 DGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREK--HQIMHRDVKPSNILVNSRG--EIKLCDFGVSGQLIDSMANS  161 (331)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhc--CCEEcCCCChhhEEEcCCC--cEEEccCccccccccccccc
Confidence            99999999963   78999999999999999999952  3699999999999998654  4788999987542    223


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCC
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADA  879 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~  879 (966)
                      ..|++.|+|||++.+..++.++|||||||++|||+||+.||..
T Consensus       162 ~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~  204 (331)
T cd06649         162 FVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPP  204 (331)
T ss_pred             CCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence            4688999999999999999999999999999999999999864

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1e-34  Score=308.43  Aligned_cols=251  Identities=22%  Similarity=0.345  Sum_probs=189.0

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcC-CCceeEEeeEEecCC-eeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIM-HPNIVRLHGVCRSEK-AAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~-H~niv~l~g~~~~~~-~~~lv~Ey~  763 (966)
                      .+...|.|.||.||+|+.+.+|..||||+++..- ..++---.+|+..+.| +. |||||++.+++.+.+ .+|+|||||
T Consensus        14 ~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~k-ln~hpniikL~Evi~d~~~~L~fVfE~M   92 (538)
T KOG0661|consen   14 VIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRK-LNPHPNIIKLKEVIRDNDRILYFVFEFM   92 (538)
T ss_pred             HHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHh-cCCCCcchhhHHHhhccCceEeeeHHhh
Confidence            3456799999999999999999999999986542 2222234789999999 56 999999999999888 999999999


Q ss_pred             CCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCC---
Q 002105          764 EGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---  836 (966)
Q Consensus       764 ~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~---  836 (966)
                      + .+|.+.++.    ++....+.|+.||.+||+|+|   ..|+.|||+||+|||+.+.  -.+|++|||+++...+.   
T Consensus        93 d-~NLYqLmK~R~r~fse~~irnim~QilqGL~hiH---k~GfFHRDlKPENiLi~~~--~~iKiaDFGLARev~SkpPY  166 (538)
T KOG0661|consen   93 D-CNLYQLMKDRNRLFSESDIRNIMYQILQGLAHIH---KHGFFHRDLKPENILISGN--DVIKIADFGLAREVRSKPPY  166 (538)
T ss_pred             h-hhHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHH---hcCcccccCChhheEeccc--ceeEecccccccccccCCCc
Confidence            8 589999863    899999999999999999999   4599999999999999853  45899999999875433   


Q ss_pred             --CcCCcccccccccC-CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccc---------
Q 002105          837 --SINSSAYVAPETKE-SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWV---------  904 (966)
Q Consensus       837 --~~~~~~y~aPE~~~-~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  904 (966)
                        .+.|..|.|||++. .+-|+.+.|+||+|||++|+.+-++-|.+..+. +.+.+... .+.....+.|.         
T Consensus       167 TeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~-Dqi~KIc~-VLGtP~~~~~~eg~~La~~m  244 (538)
T KOG0661|consen  167 TEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEI-DQIYKICE-VLGTPDKDSWPEGYNLASAM  244 (538)
T ss_pred             chhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHH-HHHHHHHH-HhCCCccccchhHHHHHHHh
Confidence              46788999999864 667899999999999999999999888764322 22211111 11111111111         


Q ss_pred             ---cccccCC-Ccc-hHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          905 ---DPFIRGH-VSS-IQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       905 ---d~~~~~~-~~~-~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                         -|...+. ... ......+.++++.+|++-||++|||++|+++.
T Consensus       245 nf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~  291 (538)
T KOG0661|consen  245 NFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQH  291 (538)
T ss_pred             ccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcC
Confidence               0111110 000 01233567778889999999999999998764

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=8.6e-34  Score=315.82  Aligned_cols=231  Identities=23%  Similarity=0.297  Sum_probs=180.4

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +|+|++|.||+++...+|..||+|++.....   .....+..|+..+.+ ++||||+++++++..++..|+||||+++|+
T Consensus         3 lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~-l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~   81 (323)
T cd05595           3 LGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN-TRHPFLTALKYAFQTHDRLCFVMEYANGGE   81 (323)
T ss_pred             eeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHh-CCCCCCcceeeEEecCCEEEEEEeCCCCCc
Confidence            6889999999999988999999999865322   122345667766666 699999999999999999999999999999


Q ss_pred             HHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCCCc
Q 002105          768 LSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSKSI  838 (966)
Q Consensus       768 L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~~~  838 (966)
                      |.+++.   .+++.....++.||+.||+|||   +.+|+||||||+||+++.+.  .++++|||++...      .....
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~--~~kL~Dfg~~~~~~~~~~~~~~~~  156 (323)
T cd05595          82 LFFHLSRERVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDG--HIKITDFGLCKEGISDGATMKTFC  156 (323)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEEcCCC--CEEecccHHhccccCCCCcccccc
Confidence            999885   3789999999999999999999   55899999999999998654  4788999986532      12246


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      ||+.|||||++.+..++.++|||||||++|||+||+.||....  .....+..   ...       +..+....+     
T Consensus       157 gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~--~~~~~~~~---~~~-------~~~~p~~~~-----  219 (323)
T cd05595         157 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD--HERLFELI---LME-------EIRFPRTLS-----  219 (323)
T ss_pred             CCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCC--HHHHHHHH---hcC-------CCCCCCCCC-----
Confidence            8999999999999999999999999999999999999986431  11111111   100       001111111     


Q ss_pred             HHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARP-----CASDVTK  945 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RP-----t~~~v~~  945 (966)
                       .++.+++.+|++.||++||     ++.++++
T Consensus       220 -~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~  250 (323)
T cd05595         220 -PEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  250 (323)
T ss_pred             -HHHHHHHHHHccCCHHHhCCCCCCCHHHHHc
Confidence             2455677899999999998     7777653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-33  Score=300.58  Aligned_cols=259  Identities=21%  Similarity=0.314  Sum_probs=184.8

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHh-hcCCCceeEEeeEEecCC----eeEEEEEcc
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGK-LIMHPNIVRLHGVCRSEK----AAYLVYEYI  763 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~-~~~H~niv~l~g~~~~~~----~~~lv~Ey~  763 (966)
                      ..+|+|+||.||||..  +++.||||++...+   .+.|..|-....- .++|+||++++++-....    +++||+||-
T Consensus       216 eli~~Grfg~V~KaqL--~~~~VAVKifp~~~---kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh  290 (534)
T KOG3653|consen  216 ELIGRGRFGCVWKAQL--DNRLVAVKIFPEQE---KQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTEFH  290 (534)
T ss_pred             HHhhcCccceeehhhc--cCceeEEEecCHHH---HHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEeeec
Confidence            3468889999999987  45899999985432   2345544333221 168999999999877655    789999999


Q ss_pred             CCCCHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhc------CCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-
Q 002105          764 EGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFH------CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       764 ~~g~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~------~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-  834 (966)
                      +.|+|.+||+.  .+|....+|+..+|+||+|||+.      +.|+|+|||||+.|||+..|...  .++|||++.... 
T Consensus       291 ~kGsL~dyL~~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTc--cIaDFGLAl~~~p  368 (534)
T KOG3653|consen  291 PKGSLCDYLKANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTC--CIADFGLALRLEP  368 (534)
T ss_pred             cCCcHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcE--EeeccceeEEecC
Confidence            99999999974  89999999999999999999964      47899999999999999988764  578999986421 


Q ss_pred             -------CCCcCCcccccccccCCCC-CC-----CcchHHHHHHHHHHHHcCCCCCC------------CCCCchhhHHH
Q 002105          835 -------SKSINSSAYVAPETKESKD-IT-----EKGDIYGFGLILIDLLTGKSPAD------------ADFGVHESIVE  889 (966)
Q Consensus       835 -------~~~~~~~~y~aPE~~~~~~-~~-----~~~Dv~S~Gv~l~el~tg~~p~~------------~~~~~~~~~~~  889 (966)
                             ...+||..|||||++.+.. +.     .+.||||.|.|||||+++..-++            .+.+.+..+.+
T Consensus       369 ~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~  448 (534)
T KOG3653|consen  369 GKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEE  448 (534)
T ss_pred             CCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHH
Confidence                   1247999999999987532 22     36899999999999999654332            12222222222


Q ss_pred             HHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCCcCCCC
Q 002105          890 WARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISSCVSGL  960 (966)
Q Consensus       890 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~~~~~~~  960 (966)
                      .....+.+...     |.++..... ...+.-+.+.+..||+.||+.|-|+.=|.+++.+..+..+..++-
T Consensus       449 mq~~VV~kK~R-----P~~p~~W~~-h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~~~~~~~~~  513 (534)
T KOG3653|consen  449 MQELVVRKKQR-----PKIPDAWRK-HAGMAVLCETIEECWDHDAEARLTAGCVEERMAELMMLWEDSSGE  513 (534)
T ss_pred             HHHHHHhhccC-----CCChhhhhc-CccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhccCCccCCc
Confidence            22222222222     222221111 123445667778999999999999999999998855544433333

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=2e-33  Score=308.41  Aligned_cols=241  Identities=20%  Similarity=0.341  Sum_probs=187.2

Q ss_pred             ccCCCCCccEEEEEEEe-----cCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          689 TSRGKKGVSSSYKVRSL-----ANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~-----~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ..+|+||+|.||+++..     .++..+|+|++........+.+.+|+..+.+ ++||||+++++++..++..++||||+
T Consensus        11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~   89 (291)
T cd05094          11 RELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTN-LQHEHIVKFYGVCGDGDPLIMVFEYM   89 (291)
T ss_pred             eeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhc-CCCCCcceEEEEEccCCceEEEEecC
Confidence            34688899999999753     2445688888755444344568888888877 69999999999999999999999999


Q ss_pred             CCCCHHHHHHc-------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEE
Q 002105          764 EGKELSEVLRN-------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRL  824 (966)
Q Consensus       764 ~~g~L~~~l~~-------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~  824 (966)
                      ++|+|.++++.                   ++|..+..++.|++.|++|||   ..+|+||||||+||+++.+.  .+++
T Consensus        90 ~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~Nil~~~~~--~~~l  164 (291)
T cd05094          90 KHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLA---SQHFVHRDLATRNCLVGANL--LVKI  164 (291)
T ss_pred             CCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccCcceEEEccCC--cEEE
Confidence            99999999852                   689999999999999999999   56899999999999999654  5788


Q ss_pred             eccccceec--------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhh
Q 002105          825 SVPGLAYCT--------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCY  895 (966)
Q Consensus       825 ~~~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~  895 (966)
                      .|+|.+...        .....++..|+|||++.+..++.++|||||||++|||+| |+.||....  .....+...   
T Consensus       165 ~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~--~~~~~~~~~---  239 (291)
T cd05094         165 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLS--NTEVIECIT---  239 (291)
T ss_pred             CCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHh---
Confidence            999987532        122345678999999999999999999999999999999 999986432  111212211   


Q ss_pred             ccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          896 SDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       896 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      . .....     ...      ....++.+++.+||+.+|++||++++|+++|++..+
T Consensus       240 ~-~~~~~-----~~~------~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~  284 (291)
T cd05094         240 Q-GRVLE-----RPR------VCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGK  284 (291)
T ss_pred             C-CCCCC-----CCc------cCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHh
Confidence            1 11100     000      112356788899999999999999999999999444

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=1.1e-33  Score=313.82  Aligned_cols=232  Identities=21%  Similarity=0.323  Sum_probs=180.0

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      .+|+|++|.||+|+...++..||+|.+....   ....+.+..|...+....+||||+++++++..++..|+||||+++|
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~gg   81 (316)
T cd05592           2 VLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNGG   81 (316)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCCC
Confidence            3689999999999998889999999886432   1222334566666665568999999999999999999999999999


Q ss_pred             CHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCCC
Q 002105          767 ELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSKS  837 (966)
Q Consensus       767 ~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~~  837 (966)
                      +|.++++   .+++.....++.|++.||+|||   ..+|+||||||+||+++.+.  .+++.|||++...      ....
T Consensus        82 ~L~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~ivH~dlkp~Nill~~~~--~~kL~Dfg~a~~~~~~~~~~~~~  156 (316)
T cd05592          82 DLMFHIQSSGRFDEARARFYAAEIICGLQFLH---KKGIIYRDLKLDNVLLDKDG--HIKIADFGMCKENMNGEGKASTF  156 (316)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCEEeCCCCHHHeEECCCC--CEEEccCcCCeECCCCCCccccc
Confidence            9999885   4788889999999999999999   56999999999999998654  5789999987542      1234


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      .||+.|+|||++.+..++.++|||||||++|||++|+.||.+..  ...+..   .....       .+.+....+    
T Consensus       157 ~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~--~~~~~~---~i~~~-------~~~~~~~~~----  220 (316)
T cd05592         157 CGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGED--EDELFD---SILND-------RPHFPRWIS----  220 (316)
T ss_pred             cCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCC--HHHHHH---HHHcC-------CCCCCCCCC----
Confidence            68999999999999999999999999999999999999997532  111111   11110       111111111    


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHH-HHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCAS-DVT  944 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~-~v~  944 (966)
                        .++.+++.+|++.+|++||++. ++.
T Consensus       221 --~~~~~ll~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05592         221 --KEAKDCLSKLFERDPTKRLGVDGDIR  246 (316)
T ss_pred             --HHHHHHHHHHccCCHHHcCCChHHHH
Confidence              2455677899999999999975 443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=1.9e-33  Score=303.88  Aligned_cols=239  Identities=20%  Similarity=0.302  Sum_probs=188.2

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|+|++|.||+|.....+..||+|++... .....++.+|+..+.+ ++||||++++++|..++..++||||+++|+
T Consensus        11 ~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~-~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   88 (263)
T cd05052          11 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKE-IKHPNLVQLLGVCTREPPFYIITEFMTYGN   88 (263)
T ss_pred             eeecCCcccceEEEEEEecCCceEEEEEecCC-chHHHHHHHHHHHHHh-CCCCChhheEEEEcCCCCcEEEEEeCCCCc
Confidence            34568899999999999888999999987543 2334567888888877 699999999999999999999999999999


Q ss_pred             HHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCC------
Q 002105          768 LSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK------  836 (966)
Q Consensus       768 L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~------  836 (966)
                      |.+++.     .++|..+..++.|+++||+|||   ..+++||||||+||+++++.  .+++.|+|.+......      
T Consensus        89 L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~nil~~~~~--~~kl~df~~~~~~~~~~~~~~~  163 (263)
T cd05052          89 LLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENH--LVKVADFGLSRLMTGDTYTAHA  163 (263)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccCcceEEEcCCC--cEEeCCCccccccccceeeccC
Confidence            999985     3789999999999999999999   56899999999999998654  5788999987543211      


Q ss_pred             -CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          837 -SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       837 -~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                       ..++..|+|||+..+..++.++|||||||++|||+| |..|+.+..  .+   +........      ..+......  
T Consensus       164 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~--~~---~~~~~~~~~------~~~~~~~~~--  230 (263)
T cd05052         164 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LS---QVYELLEKG------YRMERPEGC--  230 (263)
T ss_pred             CCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCC--HH---HHHHHHHCC------CCCCCCCCC--
Confidence             123567999999999999999999999999999998 999986531  11   111111111      011111111  


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESC  950 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~  950 (966)
                          ..++.+++.+|++.+|++||+|.|++++|+.+
T Consensus       231 ----~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         231 ----PPKVYELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             ----CHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence                13567788899999999999999999999874

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=4.4e-34  Score=307.88  Aligned_cols=235  Identities=30%  Similarity=0.518  Sum_probs=176.9

Q ss_pred             cCCCCCccEEEEEEEe----cCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          690 SRGKKGVSSSYKVRSL----ANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~----~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .+|.|.||.||+|...    ..+..|+||.+..... ...++|..|+..+.+ ++|||||+++|+|...+..++||||++
T Consensus         6 ~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~-l~h~ni~~~~g~~~~~~~~~lv~e~~~   84 (259)
T PF07714_consen    6 QIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRK-LRHPNIVKLYGFCIENEPLFLVMEYCP   84 (259)
T ss_dssp             EEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHT-HSBTTBE-EEEEEESSSSEEEEEE--T
T ss_pred             EEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccccc-ccccccccccccccccccccccccccc
Confidence            4688899999999986    3456889998854322 235678899988888 599999999999998888999999999


Q ss_pred             CCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          765 GKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       765 ~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      +|+|.++|+.     ++|..+.+++.|||+||+|||.   .+++|+||+|+||+++++.  .+|+++||+.....     
T Consensus        85 ~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~---~~iiH~~l~~~nill~~~~--~~Kl~~f~~~~~~~~~~~~  159 (259)
T PF07714_consen   85 GGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHS---NNIIHGNLSPSNILLDSNG--QVKLSDFGLSRPISEKSKY  159 (259)
T ss_dssp             TEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHH---TTEEEST-SGGGEEEETTT--EEEEESTTTGEETTTSSSE
T ss_pred             ccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccc--ccccccccccccccccccc
Confidence            9999999963     7899999999999999999994   4899999999999999755  67889999876541     


Q ss_pred             ---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          835 ---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                         ........|+|||.+....++.++||||||+++||++| |+.|+... . ...+.+...   .....      ....
T Consensus       160 ~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~-~-~~~~~~~~~---~~~~~------~~~~  228 (259)
T PF07714_consen  160 KNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDY-D-NEEIIEKLK---QGQRL------PIPD  228 (259)
T ss_dssp             EESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTS-C-HHHHHHHHH---TTEET------TSBT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccc---ccccc------eecc
Confidence               12235668999999988889999999999999999999 67887543 2 222212221   11111      0111


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL  947 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L  947 (966)
                      ..+      ..+.+++..||+.+|++||+|++++++|
T Consensus       229 ~~~------~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  229 NCP------KDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             TSB------HHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             chh------HHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence            122      2466788899999999999999999886

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=4.3e-33  Score=299.81  Aligned_cols=235  Identities=20%  Similarity=0.380  Sum_probs=184.0

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|+|++|.||+++. .++..+|+|++.. .....++|..|+..+.+ ++||||++++++|..++..++||||+++|+
T Consensus         9 ~~~lg~G~~~~vy~~~~-~~~~~~a~K~~~~-~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~   85 (256)
T cd05114           9 MKELGSGQFGVVHLGKW-RAQIKVAIKAINE-GAMSEEDFIEEAKVMMK-LSHPKLVQLYGVCTQQKPLYIVTEFMENGC   85 (256)
T ss_pred             eeEecCCcCceEEEEEe-ccCceEEEEeccc-CCccHHHHHHHHHHHHH-CCCCCceeEEEEEccCCCEEEEEEcCCCCc
Confidence            34579999999999987 5667899998653 23344578888888877 799999999999999999999999999999


Q ss_pred             HHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-------CC
Q 002105          768 LSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------SK  836 (966)
Q Consensus       768 L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-------~~  836 (966)
                      |.++++.    ++|..+..++.|++.||+|||   ..+|+||||||+||+++++.  .++++|+|.+....       ..
T Consensus        86 L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~i~~~~--~~kl~d~g~~~~~~~~~~~~~~~  160 (256)
T cd05114          86 LLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLE---RNSFIHRDLAARNCLVSSTG--VVKVSDFGMTRYVLDDEYTSSSG  160 (256)
T ss_pred             HHHHHHhCccCCCHHHHHHHHHHHHHHHHHHH---HCCccccccCcceEEEcCCC--eEEECCCCCccccCCCceeccCC
Confidence            9999863    789999999999999999999   55899999999999998654  56888998765321       11


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ..++..|+|||+..+..++.++|||||||++|||+| |+.||....  .....++..   .....   ..|..       
T Consensus       161 ~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~--~~~~~~~i~---~~~~~---~~~~~-------  225 (256)
T cd05114         161 AKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKS--NYEVVEMIS---RGFRL---YRPKL-------  225 (256)
T ss_pred             CCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCC--HHHHHHHHH---CCCCC---CCCCC-------
Confidence            234557999999998889999999999999999999 899986432  111112221   11100   11111       


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTKTL  947 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L  947 (966)
                        ...++.+++.+||+.+|++||+|+|++++|
T Consensus       226 --~~~~~~~li~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         226 --ASMTVYEVMYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             --CCHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence              113577889999999999999999999887

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=3.3e-33  Score=306.24  Aligned_cols=242  Identities=19%  Similarity=0.338  Sum_probs=187.5

Q ss_pred             ccCCCCCccEEEEEEEe-----cCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          689 TSRGKKGVSSSYKVRSL-----ANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~-----~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ..+|.||+|.||++...     .++..+|+|.+..........+..|+..+.+ ++||||++++++|...+..++||||+
T Consensus        11 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~   89 (288)
T cd05093          11 RELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTN-LQHEHIVKFYGVCVEGDPLIMVFEYM   89 (288)
T ss_pred             cccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHh-CCCCCcceEEEEEecCCccEEEEEcC
Confidence            34689999999999752     2345688888765544444567888887777 69999999999999999999999999


Q ss_pred             CCCCHHHHHH----------------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecc
Q 002105          764 EGKELSEVLR----------------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP  827 (966)
Q Consensus       764 ~~g~L~~~l~----------------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~  827 (966)
                      ++|+|.++++                .++|..+..++.|++.||+|||   ..+++||||||+||+++++.  .+++.|+
T Consensus        90 ~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH---~~~i~H~dlkp~Nili~~~~--~~kl~df  164 (288)
T cd05093          90 KHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENL--LVKIGDF  164 (288)
T ss_pred             CCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccCcceEEEccCC--cEEeccC
Confidence            9999999985                2789999999999999999999   56899999999999998654  5788999


Q ss_pred             ccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccC
Q 002105          828 GLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDC  898 (966)
Q Consensus       828 ~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  898 (966)
                      |.+....        ....+++.|+|||++.+..++.++|||||||++|||+| |+.||....  .....+...   .+.
T Consensus       165 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~--~~~~~~~i~---~~~  239 (288)
T cd05093         165 GMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS--NNEVIECIT---QGR  239 (288)
T ss_pred             CccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHH---cCC
Confidence            8875321        12234668999999998899999999999999999999 899986432  111112111   111


Q ss_pred             cccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          899 HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       899 ~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                       ..    + .....      ..++.+++.+||+.+|.+|||+.||.+.|+++.+.
T Consensus       240 -~~----~-~~~~~------~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~  282 (288)
T cd05093         240 -VL----Q-RPRTC------PKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKA  282 (288)
T ss_pred             -cC----C-CCCCC------CHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHh
Confidence             00    0 11111      13567888999999999999999999999995543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.1e-34  Score=317.36  Aligned_cols=244  Identities=19%  Similarity=0.257  Sum_probs=187.2

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ....+|+|++|.||+|+...++..||+|++.....   .....+..|+..+.+ ++|||||++++++..++..|+||||+
T Consensus         5 ~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-~~h~~iv~~~~~~~~~~~~~lv~e~~   83 (333)
T cd05600           5 ILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTT-TKSEWLVKLLYAFQDDEYLYLAMEYV   83 (333)
T ss_pred             EEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHh-CCCCCCccEEEEEEcCCEEEEEEeCC
Confidence            34567899999999999988899999999864321   123346677777766 68999999999999999999999999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---CCC
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---SKS  837 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---~~~  837 (966)
                      ++|+|.++++   .+++.....++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||++....   ...
T Consensus        84 ~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~--~~kL~Dfg~a~~~~~~~~~~  158 (333)
T cd05600          84 PGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALH---ELGYIHRDLKPENFLIDASG--HIKLTDFGLSKGIVTYANSV  158 (333)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCC--CEEEEeCcCCcccccccCCc
Confidence            9999999996   3789999999999999999999   55899999999999998654  57889999876432   345


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      .||+.|+|||++.+..++.++|||||||++|||++|+.||..... .+.. +.............+.++.        ..
T Consensus       159 ~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~-~~~~-~~i~~~~~~~~~~~~~~~~--------~~  228 (333)
T cd05600         159 VGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTP-NETW-ENLKYWKETLQRPVYDDPR--------FN  228 (333)
T ss_pred             ccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCH-HHHH-HHHHhccccccCCCCCccc--------cc
Confidence            689999999999999999999999999999999999999975421 1111 1111000000000111111        01


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      ...++.+++.+|++.+|.+||+++|+++.
T Consensus       229 ~s~~~~~li~~~l~~~~~rr~s~~~ll~h  257 (333)
T cd05600         229 LSDEAWDLITKLINDPSRRFGSLEDIKNH  257 (333)
T ss_pred             cCHHHHHHHHHHhhChhhhcCCHHHHHhC
Confidence            12345677789999999999999999854

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=5.1e-34  Score=318.22  Aligned_cols=231  Identities=22%  Similarity=0.291  Sum_probs=181.5

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +|+|++|.||+++...++..||+|++.....   .....+..|+..+.+ ++|||||++++++..++..|+||||+++|+
T Consensus         3 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g~   81 (328)
T cd05593           3 LGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKN-TRHPFLTSLKYSFQTKDRLCFVMEYVNGGE   81 (328)
T ss_pred             eeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHh-CCCCCCcceEEEEEcCCEEEEEEeCCCCCC
Confidence            5889999999999988999999999865322   222346677766666 799999999999999999999999999999


Q ss_pred             HHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CCCc
Q 002105          768 LSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SKSI  838 (966)
Q Consensus       768 L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~~~  838 (966)
                      |.+++.   .+++.+...++.||+.||+|||   ..+|+||||||+|||++.+.  .++++|||++....      ....
T Consensus        82 L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDikp~NIll~~~~--~~kL~DfG~~~~~~~~~~~~~~~~  156 (328)
T cd05593          82 LFFHLSRERVFSEDRTRFYGAEIVSALDYLH---SGKIVYRDLKLENLMLDKDG--HIKITDFGLCKEGITDAATMKTFC  156 (328)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeEECCCC--cEEEecCcCCccCCCccccccccc
Confidence            998885   3889999999999999999999   56999999999999999654  57889999875421      2346


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      ||+.|+|||++.+..++.++|||||||++|||+||+.||....  ....   ......       .++.+....+   . 
T Consensus       157 gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~--~~~~---~~~~~~-------~~~~~p~~~~---~-  220 (328)
T cd05593         157 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD--HEKL---FELILM-------EDIKFPRTLS---A-  220 (328)
T ss_pred             CCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCC--HHHH---HHHhcc-------CCccCCCCCC---H-
Confidence            8999999999999999999999999999999999999986431  1111   111111       0111111111   2 


Q ss_pred             HHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARP-----CASDVTK  945 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RP-----t~~~v~~  945 (966)
                        ++.+++.+|++.||++||     ++.|+++
T Consensus       221 --~~~~li~~~L~~dP~~R~~~~~~~~~~il~  250 (328)
T cd05593         221 --DAKSLLSGLLIKDPNKRLGGGPDDAKEIMR  250 (328)
T ss_pred             --HHHHHHHHHcCCCHHHcCCCCCCCHHHHhc
Confidence              455677899999999997     7888764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=4.6e-34  Score=317.57  Aligned_cols=227  Identities=20%  Similarity=0.278  Sum_probs=179.2

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +|+|++|.||+|+...++..||+|++....   ....+.+..|+..+.+..+|||||++++++...+..|+||||+++|+
T Consensus         3 lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~g~   82 (320)
T cd05590           3 LGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNGGD   82 (320)
T ss_pred             eeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCCch
Confidence            588999999999998889999999986432   12233456777777765579999999999999999999999999999


Q ss_pred             HHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCCCc
Q 002105          768 LSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSKSI  838 (966)
Q Consensus       768 L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~~~  838 (966)
                      |.++++   .+++.....++.|++.||+|||   ..+|+||||||+||+++.+.  .++++|||++...      .....
T Consensus        83 L~~~i~~~~~l~~~~~~~~~~ql~~~L~~lH---~~~ivH~dlkp~NIli~~~~--~~kL~DfG~~~~~~~~~~~~~~~~  157 (320)
T cd05590          83 LMFHIQKSRRFDEARARFYAAEITSALMFLH---DKGIIYRDLKLDNVLLDHEG--HCKLADFGMCKEGIFNGKTTSTFC  157 (320)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHeEECCCC--cEEEeeCCCCeecCcCCCcccccc
Confidence            999885   4889999999999999999999   56899999999999998654  4788999986542      12346


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      ||+.|||||++.+..++.++|||||||++|||+||+.||....  ...+.+..   ....       +......+     
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~--~~~~~~~i---~~~~-------~~~~~~~~-----  220 (320)
T cd05590         158 GTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAEN--EDDLFEAI---LNDE-------VVYPTWLS-----  220 (320)
T ss_pred             cCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCC--HHHHHHHH---hcCC-------CCCCCCCC-----
Confidence            8999999999999999999999999999999999999997532  11111111   1110       00111111     


Q ss_pred             HHHHHHHHHHccCCCCCCCCCH
Q 002105          919 IVEIMNLALHCTAGDPTARPCA  940 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~  940 (966)
                       .++.+++.+|++.||++||++
T Consensus       221 -~~~~~li~~~L~~dP~~R~~~  241 (320)
T cd05590         221 -QDAVDILKAFMTKNPTMRLGS  241 (320)
T ss_pred             -HHHHHHHHHHcccCHHHCCCC
Confidence             245667789999999999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=5.3e-33  Score=303.08  Aligned_cols=246  Identities=17%  Similarity=0.242  Sum_probs=183.2

Q ss_pred             cccccCCCCCccEEEEEEEecCCcE----EEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQ----FVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~----vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      .....+|+||+|.||+|....++..    +|+|++..... ....++..|+..+.+ ++|||||+++|++.. ...++||
T Consensus        10 ~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~-l~h~~iv~~~~~~~~-~~~~~i~   87 (279)
T cd05111          10 RKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGS-LDHAYIVRLLGICPG-ASLQLVT   87 (279)
T ss_pred             eeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhc-CCCCCcceEEEEECC-CccEEEE
Confidence            3445679999999999998777764    55665532211 112345555556666 699999999999864 4578999


Q ss_pred             EccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          761 EYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       761 Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      ||+++|+|.++++    .++|.....++.||+.||+|||   ..+++||||||+||+++++.  .++++|||.+....  
T Consensus        88 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~iiH~dlkp~nili~~~~--~~kl~Dfg~~~~~~~~  162 (279)
T cd05111          88 QLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLE---EHRMVHRNLAARNILLKSDS--IVQIADFGVADLLYPD  162 (279)
T ss_pred             EeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEeccccCcceEEEcCCC--cEEEcCCccceeccCC
Confidence            9999999999995    3789999999999999999999   56899999999999998654  56889999875321  


Q ss_pred             ------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCccccccccc
Q 002105          835 ------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF  907 (966)
Q Consensus       835 ------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  907 (966)
                            ....++..|+|||+..+..++.++|||||||++||++| |+.||.+..  .....++..    .....  ..|.
T Consensus       163 ~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~--~~~~~~~~~----~~~~~--~~~~  234 (279)
T cd05111         163 DKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMR--PHEVPDLLE----KGERL--AQPQ  234 (279)
T ss_pred             CcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCC--HHHHHHHHH----CCCcC--CCCC
Confidence                  12245668999999998899999999999999999998 999986532  111212221    11100  1111


Q ss_pred             ccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 002105          908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISS  955 (966)
Q Consensus       908 ~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~~  955 (966)
                         .+      ...+.+++.+||+.+|++|||+.|++++|+.+.+.++
T Consensus       235 ---~~------~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~~~~  273 (279)
T cd05111         235 ---IC------TIDVYMVMVKCWMIDENVRPTFKELANEFTRMARDPP  273 (279)
T ss_pred             ---CC------CHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHhCCc
Confidence               11      1245667889999999999999999999999666543

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=1.2e-33  Score=315.46  Aligned_cols=235  Identities=20%  Similarity=0.274  Sum_probs=183.7

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|++|.||+|+...++..||+|.+.....   ...+.+.+|+..+.+ ++|||||++++++.+++..|+||||
T Consensus        21 ~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~~~lv~e~   99 (329)
T PTZ00263         21 EMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILME-LSHPFIVNMMCSFQDENRVYFLLEF   99 (329)
T ss_pred             EEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHh-CCCCCCCcEEEEEEcCCEEEEEEcC
Confidence            344567999999999999988899999999864321   122346777777777 6999999999999999999999999


Q ss_pred             cCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC---C
Q 002105          763 IEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS---K  836 (966)
Q Consensus       763 ~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~---~  836 (966)
                      +++|+|.++++.   +++.....++.|++.||+|||   +.+|+||||||+||+++.++  .++++|||++.....   .
T Consensus       100 ~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~--~~kl~Dfg~~~~~~~~~~~  174 (329)
T PTZ00263        100 VVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLH---SKDIIYRDLKPENLLLDNKG--HVKVTDFGFAKKVPDRTFT  174 (329)
T ss_pred             CCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEECCCC--CEEEeeccCceEcCCCcce
Confidence            999999999863   788888899999999999999   56899999999999999654  578999998865322   3


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchH
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ  916 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  916 (966)
                      ..||+.|+|||++.+..++.++|||||||++|||+||+.||....  .....+.+   ... ..      .+....+   
T Consensus       175 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~--~~~~~~~i---~~~-~~------~~p~~~~---  239 (329)
T PTZ00263        175 LCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDT--PFRIYEKI---LAG-RL------KFPNWFD---  239 (329)
T ss_pred             ecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCC--HHHHHHHH---hcC-Cc------CCCCCCC---
Confidence            468999999999999999999999999999999999999986431  11111111   111 10      0111111   


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCC-----HHHHH
Q 002105          917 NEIVEIMNLALHCTAGDPTARPC-----ASDVT  944 (966)
Q Consensus       917 ~~~~~~~~l~~~C~~~~P~~RPt-----~~~v~  944 (966)
                         .++.+++.+|++.||.+||+     ++|++
T Consensus       240 ---~~~~~li~~~L~~dP~~R~~~~~~~~~~ll  269 (329)
T PTZ00263        240 ---GRARDLVKGLLQTDHTKRLGTLKGGVADVK  269 (329)
T ss_pred             ---HHHHHHHHHHhhcCHHHcCCCCCCCHHHHh
Confidence               24567788999999999997     56655

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.5e-34  Score=314.35  Aligned_cols=234  Identities=24%  Similarity=0.322  Sum_probs=183.0

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ...+|+|++|.||+|+...++..||+|++.....   ...+.+.+|+..+.+ ++|||||++++++.+++..|+||||++
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~~~lv~e~~~   84 (291)
T cd05612           6 IKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKE-VSHPFIIRLFWTEHDQRFLYMLMEYVP   84 (291)
T ss_pred             eeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHh-CCCCcHhhhHhhhccCCeEEEEEeCCC
Confidence            4457899999999999988899999999864321   123346677777766 799999999999999999999999999


Q ss_pred             CCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC---CCc
Q 002105          765 GKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS---KSI  838 (966)
Q Consensus       765 ~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~---~~~  838 (966)
                      +|+|.++++   .+++.....++.|++.||+|||   +.+|+||||||+||+++.++  .++++|||++.....   ...
T Consensus        85 ~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~NIli~~~~--~~kl~Dfg~~~~~~~~~~~~~  159 (291)
T cd05612          85 GGELFSYLRNSGRFSNSTGLFYASEIVCALEYLH---SKEIVYRDLKPENILLDKEG--HIKLTDFGFAKKLRDRTWTLC  159 (291)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCC--CEEEEecCcchhccCCccccc
Confidence            999999986   3788999999999999999999   56999999999999998654  578999998764322   346


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      |++.|+|||++.+..++.++|||||||++|||+||+.||.....  ..+.+.+   ... ..      .+....+     
T Consensus       160 gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~--~~~~~~i---~~~-~~------~~~~~~~-----  222 (291)
T cd05612         160 GTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNP--FGIYEKI---LAG-KL------EFPRHLD-----  222 (291)
T ss_pred             CChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHH---HhC-Cc------CCCccCC-----
Confidence            89999999999999999999999999999999999999875321  1111111   111 00      0111111     


Q ss_pred             HHHHHHHHHHccCCCCCCCCC-----HHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPC-----ASDVTK  945 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt-----~~~v~~  945 (966)
                       .++.+++.+|++.||.+||+     ++|+++
T Consensus       223 -~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~  253 (291)
T cd05612         223 -LYAKDLIKKLLVVDRTRRLGNMKNGADDVKN  253 (291)
T ss_pred             -HHHHHHHHHHcCCCHHHccCCccCCHHHHhc
Confidence             24567788999999999995     777653

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-33  Score=283.18  Aligned_cols=190  Identities=25%  Similarity=0.400  Sum_probs=164.7

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCccccc---chHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTS---SFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~---~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      +.+...|.|.||.|..++...+|..+|+|.+....-...+   .-..|-..+.. +.||.+|++++.|.+.+.+|+||||
T Consensus        47 e~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~-v~~PFlv~l~~t~~d~~~lymvmey  125 (355)
T KOG0616|consen   47 ERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKA-VSHPFLVKLYGTFKDNSNLYMVMEY  125 (355)
T ss_pred             hheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhh-ccCceeEEEEEeeccCCeEEEEEec
Confidence            4566789999999999999999999999998654332222   12344444444 7999999999999999999999999


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC---C
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS---K  836 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~---~  836 (966)
                      ++||.|..+++   +++....+-+|.+|+.|++|||   +..|++||+||+|||+|.  ..++|+.|||++....+   .
T Consensus       126 v~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH---~~~iiYRDLKPENiLlD~--~G~iKitDFGFAK~v~~rT~T  200 (355)
T KOG0616|consen  126 VPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLH---SLDIIYRDLKPENLLLDQ--NGHIKITDFGFAKRVSGRTWT  200 (355)
T ss_pred             cCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHH---hcCeeeccCChHHeeecc--CCcEEEEeccceEEecCcEEE
Confidence            99999999997   4899999999999999999999   668999999999999995  46799999999986544   3


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCC
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADF  881 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~  881 (966)
                      .+|||.|+|||+++.++|..++|-|||||++|||+.|.+||..+.
T Consensus       201 lCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~  245 (355)
T KOG0616|consen  201 LCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDN  245 (355)
T ss_pred             ecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCC
Confidence            589999999999999999999999999999999999999997653

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=1.4e-33  Score=304.50  Aligned_cols=235  Identities=24%  Similarity=0.403  Sum_probs=175.8

Q ss_pred             cCCCCCccEEEEEEEecC------------CcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeE
Q 002105          690 SRGKKGVSSSYKVRSLAN------------DMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAY  757 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~------------~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~  757 (966)
                      .+|+|++|.||+++....            ...||+|.+..........|..|+..+.+ ++|||||+++|++..+...+
T Consensus         2 ~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~-l~hp~iv~~~~~~~~~~~~~   80 (262)
T cd05077           2 HLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQ-VSHKHIVLLYGVCVRDVENI   80 (262)
T ss_pred             ccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHh-CCCCCEeeEEEEEecCCCCE
Confidence            368999999999985322            23577777644333333456666666655 79999999999999999999


Q ss_pred             EEEEccCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC-----ceEEEeccc
Q 002105          758 LVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE-----PHLRLSVPG  828 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~-----~~~~~~~~~  828 (966)
                      +||||+++|+|..+++.    +++..+.+++.||++||+|||   +.+|+||||||+||+++.+..     +.+++.+||
T Consensus        81 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g  157 (262)
T cd05077          81 MVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLE---DKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPG  157 (262)
T ss_pred             EEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhh---hCCeECCCCCcccEEEecCCccCCCCceeEeCCCC
Confidence            99999999999998862    789999999999999999999   669999999999999975432     347888999


Q ss_pred             cceec--CCCCcCCcccccccccC-CCCCCCcchHHHHHHHHHHHH-cCCCCCCCCCCchhhHHHHHHHhhccCcccccc
Q 002105          829 LAYCT--DSKSINSSAYVAPETKE-SKDITEKGDIYGFGLILIDLL-TGKSPADADFGVHESIVEWARYCYSDCHLDTWV  904 (966)
Q Consensus       829 ~~~~~--~~~~~~~~~y~aPE~~~-~~~~~~~~Dv~S~Gv~l~el~-tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  904 (966)
                      .+...  .....++..|||||++. +..++.++|||||||++|||+ +|+.|+..... .+ . ...   ... ... ..
T Consensus       158 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~-~~-~-~~~---~~~-~~~-~~  229 (262)
T cd05077         158 IPITVLSRQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTL-AE-K-ERF---YEG-QCM-LV  229 (262)
T ss_pred             CCccccCcccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcch-hH-H-HHH---Hhc-Ccc-CC
Confidence            87542  22345788899999886 567899999999999999997 58888754311 11 1 110   010 000 01


Q ss_pred             cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002105          905 DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL  947 (966)
Q Consensus       905 d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L  947 (966)
                      .|           ...++.+++.+||+.||.+||++.|+++.+
T Consensus       230 ~~-----------~~~~~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         230 TP-----------SCKELADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             CC-----------ChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence            11           123567788899999999999999998875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.3e-34  Score=312.03  Aligned_cols=239  Identities=25%  Similarity=0.355  Sum_probs=193.6

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCe-eEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKA-AYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~-~~lv~E  761 (966)
                      ++.+..+|+|.||.++.+++..++..+|+|++.-.  .....+....|+..+++ ++|||||.+.+.+.+++. .+||||
T Consensus         6 Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~-~~hP~iv~y~ds~~~~~~~l~Ivm~   84 (426)
T KOG0589|consen    6 YEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSK-LLHPNIVEYKDSFEEDGQLLCIVME   84 (426)
T ss_pred             hhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHh-ccCCCeeeeccchhcCCceEEEEEe
Confidence            45566789999999999999999999999998543  22334456888989988 799999999999999888 999999


Q ss_pred             ccCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          762 YIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       762 y~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      ||+||++.+.+..     ++.++..+++.|+..|+.|||   +..|+|||||++||++..+.  .|+++|||+++...  
T Consensus        85 Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH---~~~iLHRDlK~~Nifltk~~--~VkLgDfGlaK~l~~~  159 (426)
T KOG0589|consen   85 YCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLH---ENRVLHRDLKCANIFLTKDK--KVKLGDFGLAKILNPE  159 (426)
T ss_pred             ecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH---hhhhhcccchhhhhhccccC--ceeecchhhhhhcCCc
Confidence            9999999999863     677788899999999999999   56899999999999999654  46999999987633  


Q ss_pred             ----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                          ...+|||.||.||...+.+|+.|+||||+||++|||++-+++|.+.. ....+.+..+..         .+|.- +
T Consensus       160 ~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~-m~~Li~ki~~~~---------~~Plp-~  228 (426)
T KOG0589|consen  160 DSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASN-MSELILKINRGL---------YSPLP-S  228 (426)
T ss_pred             hhhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccc-hHHHHHHHhhcc---------CCCCC-c
Confidence                34689999999999999999999999999999999999999998642 222332222211         23322 1


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      .+      ..++..++..|++.+|+.||++.+++.+
T Consensus       229 ~y------s~el~~lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  229 MY------SSELRSLVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             cc------cHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence            22      2345566779999999999999999865

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=3.3e-33  Score=304.88  Aligned_cols=235  Identities=18%  Similarity=0.215  Sum_probs=179.3

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCccc---ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +|+|++|.||++....++..||+|++.......   .+.+..|+..+.+ ++|||||++++++..++..++||||+++|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~-l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~   79 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAK-VHSRFIVSLAYAFQTKTDLCLVMTIMNGGD   79 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHh-CCCCcEeeeeEEEcCCCeEEEEEeCCCCCC
Confidence            488999999999998899999999986432211   2345667776666 699999999999999999999999999999


Q ss_pred             HHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          768 LSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       768 L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      |..++.       .+++..+..++.||+.||+|||   +.+|+||||||+||+++.+.  .+++.|||.+....      
T Consensus        80 L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~--~~~l~dfg~~~~~~~~~~~~  154 (280)
T cd05608          80 LRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLH---QRRIIYRDLKPENVLLDNDG--NVRISDLGLAVELKDGQSKT  154 (280)
T ss_pred             HHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCC--CEEEeeCccceecCCCCccc
Confidence            998873       3789999999999999999999   56999999999999998654  57889999875421      


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ....||+.|+|||++.+..++.++|||||||++|||+||+.||........ ..+........ .      .......  
T Consensus       155 ~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~-~~~~~~~~~~~-~------~~~~~~~--  224 (280)
T cd05608         155 KGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVE-NKELKQRILND-S------VTYPDKF--  224 (280)
T ss_pred             cccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchh-HHHHHHhhccc-C------CCCcccC--
Confidence            123678999999999999999999999999999999999999975322111 10111111110 0      0011111  


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARP-----CASDVTK  945 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RP-----t~~~v~~  945 (966)
                          ..++.+++..|++.||++||     +++++++
T Consensus       225 ----~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~  256 (280)
T cd05608         225 ----SPASKSFCEALLAKDPEKRLGFRDGNCDGLRT  256 (280)
T ss_pred             ----CHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhc
Confidence                12456777899999999999     5555553

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=7.6e-33  Score=299.79  Aligned_cols=242  Identities=18%  Similarity=0.269  Sum_probs=188.3

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ...+|.|++|.||+|+...++..||||++.....   .....+..|+..+.+ ++||||+++++++...+..++||||++
T Consensus         7 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~~v~e~~~   85 (267)
T cd08228           7 EKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQ-LNHPNVIKYLDSFIEDNELNIVLELAD   85 (267)
T ss_pred             eeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHh-CCCcceeeeeeeEEECCeEEEEEEecC
Confidence            3456889999999999988999999998754322   122356778877777 699999999999999999999999999


Q ss_pred             CCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---
Q 002105          765 GKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       765 ~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---  834 (966)
                      +|+|.+++.       .+++.....++.|+++||+|||   +.+++||||||+||+++.+.  .+++.|+|.+....   
T Consensus        86 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~~~nil~~~~~--~~~l~d~g~~~~~~~~~  160 (267)
T cd08228          86 AGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMH---SRRVMHRDIKPANVFITATG--VVKLGDLGLGRFFSSKT  160 (267)
T ss_pred             CCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCCHHHEEEcCCC--CEEECccccceeccchh
Confidence            999998884       2678888999999999999999   56999999999999998654  46888998765422   


Q ss_pred             ---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCC
Q 002105          835 ---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH  911 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  911 (966)
                         ....+++.|+|||+..+..++.++|||||||++|||+||+.|+..+.....   ++........     ..|...  
T Consensus       161 ~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~---~~~~~~~~~~-----~~~~~~--  230 (267)
T cd08228         161 TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLF---SLCQKIEQCD-----YPPLPT--  230 (267)
T ss_pred             HHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHH---HHHHHHhcCC-----CCCCCh--
Confidence               124578899999999888899999999999999999999999865422211   1221111100     011110  


Q ss_pred             CcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          912 VSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       912 ~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                          ......+.+++.+||+.+|++||++.||++.++.
T Consensus       231 ----~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~  264 (267)
T cd08228         231 ----EHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQ  264 (267)
T ss_pred             ----hhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHH
Confidence                1122356778889999999999999999999987

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6e-34  Score=277.70  Aligned_cols=231  Identities=21%  Similarity=0.328  Sum_probs=187.0

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      .|+|-||.||.|+...++..||+|.+.+..   .....++.+|++.-+. ++||||.++||++.+....|+++||.++|+
T Consensus        30 LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~-L~hpnilrlY~~fhd~~riyLilEya~~ge  108 (281)
T KOG0580|consen   30 LGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSH-LRHPNILRLYGYFHDSKRIYLILEYAPRGE  108 (281)
T ss_pred             ccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecc-cCCccHHhhhhheeccceeEEEEEecCCch
Confidence            466777789999999999999999986542   2334567777766666 799999999999999999999999999999


Q ss_pred             HHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----CCCc
Q 002105          768 LSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----SKSI  838 (966)
Q Consensus       768 L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----~~~~  838 (966)
                      +...|+     +++......+..|+|.|+.|+|   .+.||||||||+|+|++..+.  +|++|||.+....    ...+
T Consensus       109 l~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h---~k~VIhRdiKpenlLlg~~~~--lkiAdfGwsV~~p~~kR~tlc  183 (281)
T KOG0580|consen  109 LYKDLQEGRMKRFDEQRAATYIKQLANALLYCH---LKRVIHRDIKPENLLLGSAGE--LKIADFGWSVHAPSNKRKTLC  183 (281)
T ss_pred             HHHHHHhcccccccccchhHHHHHHHHHHHHhc---cCCcccCCCCHHHhccCCCCC--eeccCCCceeecCCCCceeee
Confidence            999997     3778888899999999999999   779999999999999996554  7899999876542    3458


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      ||.-|.|||...+..++.++|+|++||..||++.|.+||.... ..+...+..+           +|-.++...+     
T Consensus       184 gt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~-~~etYkrI~k-----------~~~~~p~~is-----  246 (281)
T KOG0580|consen  184 GTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQS-HSETYKRIRK-----------VDLKFPSTIS-----  246 (281)
T ss_pred             cccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhh-hHHHHHHHHH-----------ccccCCcccC-----
Confidence            9999999999999999999999999999999999999997643 1222211111           1222222222     


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       .++.+++.+|+..+|.+|.+..||++
T Consensus       247 -~~a~dlI~~ll~~~p~~r~~l~~v~~  272 (281)
T KOG0580|consen  247 -GGAADLISRLLVKNPIERLALTEVMD  272 (281)
T ss_pred             -hhHHHHHHHHhccCccccccHHHHhh
Confidence             24567788999999999999999875

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=4.2e-33  Score=303.52  Aligned_cols=237  Identities=21%  Similarity=0.247  Sum_probs=181.2

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +|+||+|.||+++...+|..+|+|++.....   .....+..|+..+.+ ++||||+++++++..+...++||||+++|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~-l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~   79 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEK-VNSPFIVNLAYAFESKTHLCLVMSLMNGGD   79 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHh-cCCCcEEEEEEEEecCCeEEEEEecCCCCC
Confidence            4889999999999988999999999864221   122334557666666 699999999999999999999999999999


Q ss_pred             HHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-----CC
Q 002105          768 LSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----KS  837 (966)
Q Consensus       768 L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-----~~  837 (966)
                      |.+++.     .++|..+..++.|++.||+|||   ..+|+||||||+||+++.+.  .+++.|||.+.....     ..
T Consensus        80 L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dikp~Nili~~~~--~~~l~Dfg~~~~~~~~~~~~~~  154 (277)
T cd05607          80 LKYHIYNVGERGLEMERVIHYSAQITCGILHLH---SMDIVYRDMKPENVLLDDQG--NCRLSDLGLAVELKDGKTITQR  154 (277)
T ss_pred             HHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEEEccCChHhEEEcCCC--CEEEeeceeeeecCCCceeecc
Confidence            998874     3788999999999999999999   56999999999999998654  468889998754321     24


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      .+++.|+|||++.+..++.++||||+||++|||++|+.||........ ..+..+......     +.. ....+     
T Consensus       155 ~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~-~~~~~~~~~~~~-----~~~-~~~~~-----  222 (277)
T cd05607         155 AGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVA-KEELKRRTLEDE-----VKF-EHQNF-----  222 (277)
T ss_pred             CCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhh-HHHHHHHhhccc-----ccc-ccccC-----
Confidence            578899999999988899999999999999999999999864321111 111111111110     100 00111     


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                       ..++.+++..|++.||++||+++|+++.
T Consensus       223 -~~~~~~li~~~L~~~P~~R~~~~~~~~~  250 (277)
T cd05607         223 -TEESKDICRLFLAKKPEDRLGSREKNDD  250 (277)
T ss_pred             -CHHHHHHHHHHhccCHhhCCCCccchhh
Confidence             1246678889999999999999876643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3e-34  Score=314.01  Aligned_cols=238  Identities=23%  Similarity=0.360  Sum_probs=186.1

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      -...|+|.+|.||-|++..+...+|||.+...+....+-. .|+..+.+.++|.|||+++|.|.+++..-|.||-++||+
T Consensus       580 rvVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPL-hEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGS  658 (1226)
T KOG4279|consen  580 RVVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPL-HEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGS  658 (1226)
T ss_pred             eEEeecCceeEEEeeccccceeEEEeeecccccchhhccH-HHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCc
Confidence            3456888888999999999999999999977665544444 454555555899999999999999999999999999999


Q ss_pred             HHHHHHc----C--CHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee------cCC
Q 002105          768 LSEVLRN----L--SWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------TDS  835 (966)
Q Consensus       768 L~~~l~~----l--~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~------~~~  835 (966)
                      |...|+.    +  .+.+.--+..||.+||.|||   ...|||||||-+|||++. +...+|++|||..+.      ...
T Consensus       659 LSsLLrskWGPlKDNEstm~fYtkQILeGLkYLH---en~IVHRDIKGDNVLvNT-ySGvlKISDFGTsKRLAginP~TE  734 (1226)
T KOG4279|consen  659 LSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLH---ENKIVHRDIKGDNVLVNT-YSGVLKISDFGTSKRLAGINPCTE  734 (1226)
T ss_pred             HHHHHHhccCCCccchhHHHHHHHHHHHHhhhhh---hcceeeccccCCcEEEee-ccceEEecccccchhhccCCcccc
Confidence            9999973    3  45556668899999999999   568999999999999985 567889999998754      345


Q ss_pred             CCcCCcccccccccCC--CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          836 KSINSSAYVAPETKES--KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~--~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      ...||..|||||++..  +.|+.++|||||||++.||+||++||..- +.....      .+.-+...  +.|.++.   
T Consensus       735 TFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~El-gspqAA------MFkVGmyK--vHP~iPe---  802 (1226)
T KOG4279|consen  735 TFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVEL-GSPQAA------MFKVGMYK--VHPPIPE---  802 (1226)
T ss_pred             ccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeec-CChhHh------hhhhccee--cCCCCcH---
Confidence            6689999999999875  45899999999999999999999998642 221111      01111111  3343332   


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         +--.+....+++|+.+||.+||++++++.
T Consensus       803 ---elsaeak~FilrcFepd~~~R~sA~~LL~  831 (1226)
T KOG4279|consen  803 ---ELSAEAKNFILRCFEPDPCDRPSAKDLLQ  831 (1226)
T ss_pred             ---HHHHHHHHHHHHHcCCCcccCccHHHhcc
Confidence               22345667889999999999999999864

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=9.6e-34  Score=305.23  Aligned_cols=236  Identities=22%  Similarity=0.381  Sum_probs=177.4

Q ss_pred             cCCCCCccEEEEEEEecCCc-------EEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          690 SRGKKGVSSSYKVRSLANDM-------QFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~-------~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .+|.||||.||+|.....+.       .+|+|.+........+++..|+..+.+ ++|||||++++++..++..++||||
T Consensus         2 ~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~-~~h~~iv~~~~~~~~~~~~~lv~e~   80 (258)
T cd05078           2 SLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQ-LSHKHLVLNYGVCVCGDESIMVQEY   80 (258)
T ss_pred             CCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHh-CCCCChhheeeEEEeCCCcEEEEec
Confidence            46899999999998754433       477777644333333456666666655 7999999999999999999999999


Q ss_pred             cCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCc------eEEEecccccee
Q 002105          763 IEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEP------HLRLSVPGLAYC  832 (966)
Q Consensus       763 ~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~------~~~~~~~~~~~~  832 (966)
                      +++|+|.++++.    ++|..+..++.||+.||+|||   ..+|+||||||+||+++.+...      .++++++|.+..
T Consensus        81 ~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~  157 (258)
T cd05078          81 VKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLE---DKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISIT  157 (258)
T ss_pred             CCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEEecccccccCCCceEEecccccccc
Confidence            999999999963    789999999999999999999   5699999999999999865443      467888887654


Q ss_pred             cC--CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCC-CCCCCCCCchhhHHHHHHHhhccCcccccccccc
Q 002105          833 TD--SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGK-SPADADFGVHESIVEWARYCYSDCHLDTWVDPFI  908 (966)
Q Consensus       833 ~~--~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  908 (966)
                      ..  ....+++.|+|||++.+ ..++.++|||||||++|||++|. .|+... .... ....    ... .      +.+
T Consensus       158 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~-~~~~-~~~~----~~~-~------~~~  224 (258)
T cd05078         158 VLPKEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSAL-DSQK-KLQF----YED-R------HQL  224 (258)
T ss_pred             cCCchhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhc-cHHH-HHHH----HHc-c------ccC
Confidence            32  23457889999999876 45799999999999999999995 554322 1111 1011    111 0      001


Q ss_pred             cCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       909 ~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                      ...      ...++.+++.+||+.+|++|||++|+++.|+
T Consensus       225 ~~~------~~~~~~~li~~~l~~~p~~Rps~~~il~~l~  258 (258)
T cd05078         225 PAP------KWTELANLINQCMDYEPDFRPSFRAIIRDLN  258 (258)
T ss_pred             CCC------CcHHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence            111      1135677888999999999999999999874

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=6.6e-34  Score=316.67  Aligned_cols=231  Identities=19%  Similarity=0.307  Sum_probs=180.6

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +|+|++|.||+|+...++..||+|.+....   ....+.+..|.+.+....+||||+++++++..++..|+||||+++|+
T Consensus         3 lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~   82 (321)
T cd05591           3 LGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNGGD   82 (321)
T ss_pred             cccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCCCc
Confidence            689999999999998889999999986432   12223456677666665689999999999999999999999999999


Q ss_pred             HHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCCCc
Q 002105          768 LSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSKSI  838 (966)
Q Consensus       768 L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~~~  838 (966)
                      |..++.   .+++.....++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||++...      .....
T Consensus        83 L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDikp~Nill~~~~--~~kL~Dfg~~~~~~~~~~~~~~~~  157 (321)
T cd05591          83 LMFQIQRSRKFDEPRSRFYAAEVTLALMFLH---RHGVIYRDLKLDNILLDAEG--HCKLADFGMCKEGILNGVTTTTFC  157 (321)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCC--CEEEeecccceecccCCccccccc
Confidence            998885   4889999999999999999999   55899999999999998654  5788999987542      12345


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      ||+.|+|||++.+..++.++|||||||++|||+||+.||....  .....+..   .....    ..|   ...+     
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~--~~~~~~~i---~~~~~----~~p---~~~~-----  220 (321)
T cd05591         158 GTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADN--EDDLFESI---LHDDV----LYP---VWLS-----  220 (321)
T ss_pred             cCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCC--HHHHHHHH---HcCCC----CCC---CCCC-----
Confidence            8899999999999999999999999999999999999997542  11111111   11100    111   1111     


Q ss_pred             HHHHHHHHHHccCCCCCCCC-------CHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARP-------CASDVT  944 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RP-------t~~~v~  944 (966)
                       .++.+++..|++.||++||       ++.++.
T Consensus       221 -~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~  252 (321)
T cd05591         221 -KEAVSILKAFMTKNPNKRLGCVASQGGEDAIK  252 (321)
T ss_pred             -HHHHHHHHHHhccCHHHcCCCCCCCCCHHHHh
Confidence             2456777899999999999       666665

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=2.8e-33  Score=310.69  Aligned_cols=232  Identities=21%  Similarity=0.297  Sum_probs=181.3

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      .+|+|++|.||+|+...+|..||+|++....   ....+.+..|+..+.+..+||||+++++++.+++..|+||||+++|
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g   81 (316)
T cd05620           2 VLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNGG   81 (316)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCCC
Confidence            3688999999999998899999999986532   1222345666666666568999999999999999999999999999


Q ss_pred             CHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCCC
Q 002105          767 ELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSKS  837 (966)
Q Consensus       767 ~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~~  837 (966)
                      +|.+++.   .+++.....++.|+++||+|||   ..+|+||||||+||+++.+.  .++++|||++...      ....
T Consensus        82 ~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivHrDlkp~Nil~~~~~--~~kl~Dfg~~~~~~~~~~~~~~~  156 (316)
T cd05620          82 DLMFHIQDKGRFDLYRATFYAAEIVCGLQFLH---SKGIIYRDLKLDNVMLDRDG--HIKIADFGMCKENVFGDNRASTF  156 (316)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCC--CEEeCccCCCeecccCCCceecc
Confidence            9999885   3789999999999999999999   56999999999999999764  4788999987532      1234


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      .||+.|+|||++.+..++.++|||||||++|||++|+.||....  .....+....   .       .+......+    
T Consensus       157 ~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~--~~~~~~~~~~---~-------~~~~~~~~~----  220 (316)
T cd05620         157 CGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDD--EDELFESIRV---D-------TPHYPRWIT----  220 (316)
T ss_pred             CCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC--HHHHHHHHHh---C-------CCCCCCCCC----
Confidence            68999999999999999999999999999999999999997542  1111121110   0       111111111    


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHH-HHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCAS-DVT  944 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~-~v~  944 (966)
                        .++.+++.+|++.||++||++. ++.
T Consensus       221 --~~~~~li~~~l~~dP~~R~~~~~~~~  246 (316)
T cd05620         221 --KESKDILEKLFERDPTRRLGVVGNIR  246 (316)
T ss_pred             --HHHHHHHHHHccCCHHHcCCChHHHH
Confidence              2455677899999999999984 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=1.7e-33  Score=304.56  Aligned_cols=233  Identities=20%  Similarity=0.302  Sum_probs=183.3

Q ss_pred             cccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccc---cchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          684 TEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITT---SSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       684 ~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~---~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      +.+.+..+|+|+||+||.|+-..+|..+|+|++.+..-...   +-...|=..+.. .++|.||+||-.|++.+.+||||
T Consensus       142 DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~-~ds~~vVKLyYsFQD~~~LYLiM  220 (550)
T KOG0605|consen  142 DFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAE-VDSPWVVKLYYSFQDKEYLYLIM  220 (550)
T ss_pred             cchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhh-cCCCcEEEEEEEecCCCeeEEEE
Confidence            34677889999999999999999999999999976543322   223444444555 68999999999999999999999


Q ss_pred             EccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----
Q 002105          761 EYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----  833 (966)
Q Consensus       761 Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----  833 (966)
                      ||++|||+...|.+   |+......++.+.+.|++-+|   ..|+|||||||+|+|||.  .+++|++|||++...    
T Consensus       221 EylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH---~~gyIHRDIKPdNlLiD~--~GHiKLSDFGLs~gl~~~~  295 (550)
T KOG0605|consen  221 EYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESIH---QLGYIHRDIKPDNLLIDA--KGHIKLSDFGLSTGLDKKH  295 (550)
T ss_pred             EecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHHH---HcCcccccCChhheeecC--CCCEeeccccccchhhhhh
Confidence            99999999999964   888888889999999999999   559999999999999995  468999999986310    


Q ss_pred             -----------------------C--------------------------CCCcCCcccccccccCCCCCCCcchHHHHH
Q 002105          834 -----------------------D--------------------------SKSINSSAYVAPETKESKDITEKGDIYGFG  864 (966)
Q Consensus       834 -----------------------~--------------------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~G  864 (966)
                                             .                          -..+|||-|||||++.+..|+..+|.||+|
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG  375 (550)
T KOG0605|consen  296 RIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLG  375 (550)
T ss_pred             hhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHH
Confidence                                   0                          012689999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCc--hhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCC
Q 002105          865 LILIDLLTGKSPADADFGV--HESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPC  939 (966)
Q Consensus       865 v~l~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt  939 (966)
                      ||+|||+.|-+||.++...  -..++.|....         .-|.-    ....   .+..+++.+|+. ||++|-.
T Consensus       376 ~ImyEmLvGyPPF~s~tp~~T~rkI~nwr~~l---------~fP~~----~~~s---~eA~DLI~rll~-d~~~RLG  435 (550)
T KOG0605|consen  376 CIMYEMLVGYPPFCSETPQETYRKIVNWRETL---------KFPEE----VDLS---DEAKDLITRLLC-DPENRLG  435 (550)
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHhhhc---------cCCCc----Cccc---HHHHHHHHHHhc-CHHHhcC
Confidence            9999999999999876432  22334454321         11100    0011   356677888888 9999976

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=5.7e-33  Score=303.56  Aligned_cols=240  Identities=24%  Similarity=0.373  Sum_probs=186.5

Q ss_pred             ccccCCCCCccEEEEEEEecCC-----cEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLAND-----MQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~-----~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      ....+|+|++|.||+|.....+     ..||+|++..... ....+|.+|+..+.+ ++||||+++++++...+..+++|
T Consensus         9 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~-l~h~~i~~~~~~~~~~~~~~~~~   87 (283)
T cd05048           9 FLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSD-LQHPNIVCLLGVCTKEQPTCMLF   87 (283)
T ss_pred             hhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHh-cCCcccceEEEEEcCCCceEEEE
Confidence            3456789999999999875544     6789998754322 223457788887777 79999999999999999999999


Q ss_pred             EccCCCCHHHHHHc-------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCce
Q 002105          761 EYIEGKELSEVLRN-------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPH  821 (966)
Q Consensus       761 Ey~~~g~L~~~l~~-------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~  821 (966)
                      ||+++|+|.+++..                   +++.+...++.|++.||+|||   ..+++||||||+||+++++.  .
T Consensus        88 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH---~~~i~H~dlkp~Nil~~~~~--~  162 (283)
T cd05048          88 EYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLS---SHHFVHRDLAARNCLVGEGL--T  162 (283)
T ss_pred             ecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccccceEEEcCCC--c
Confidence            99999999999842                   677888999999999999999   55899999999999998654  4


Q ss_pred             EEEeccccceec--------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHH
Q 002105          822 LRLSVPGLAYCT--------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWAR  892 (966)
Q Consensus       822 ~~~~~~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~  892 (966)
                      +++.|||++...        .....+++.|+|||+.....++.++|||||||++|||+| |..||.+..  ...+.+++.
T Consensus       163 ~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~--~~~~~~~i~  240 (283)
T cd05048         163 VKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFS--NQEVIEMIR  240 (283)
T ss_pred             EEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCC--HHHHHHHHH
Confidence            788999987542        122345678999999988899999999999999999998 999986532  122222221


Q ss_pred             HhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          893 YCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       893 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      .    ....     .....      ...++.+++.+||+.||++||+++||.++|++
T Consensus       241 ~----~~~~-----~~~~~------~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05048         241 S----RQLL-----PCPED------CPARVYALMIECWNEIPARRPRFKDIHTRLRS  282 (283)
T ss_pred             c----CCcC-----CCccc------CCHHHHHHHHHHccCChhhCcCHHHHHHHHhc
Confidence            1    1100     01111      12467778899999999999999999999975

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=4.7e-34  Score=318.19  Aligned_cols=228  Identities=24%  Similarity=0.307  Sum_probs=178.6

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +|+|++|.||+|+...+|..||+|++....   ......+..|+..+.+.++|||||++++++..++..|+||||+++|+
T Consensus         3 lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~   82 (323)
T cd05575           3 IGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNGGE   82 (323)
T ss_pred             eeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCCCC
Confidence            688999999999998899999999986432   11223455666666565899999999999999999999999999999


Q ss_pred             HHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCCCc
Q 002105          768 LSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSKSI  838 (966)
Q Consensus       768 L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~~~  838 (966)
                      |.++++   .+++.....++.||+.||+|||   ..+|+||||||+|||++.+.  .++++|||++...      .....
T Consensus        83 L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~givH~dikp~NIll~~~~--~~kl~Dfg~~~~~~~~~~~~~~~~  157 (323)
T cd05575          83 LFFHLQRERSFPEPRARFYAAEIASALGYLH---SLNIIYRDLKPENILLDSQG--HVVLTDFGLCKEGIEHSKTTSTFC  157 (323)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHeEECCCC--cEEEeccCCCcccccCCCcccccc
Confidence            999886   3788889999999999999999   55899999999999998654  5789999987532      12346


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      ||+.|||||++.+..++.++|||||||++|||++|+.||....  ..   +........ ..      .+....+     
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~--~~---~~~~~i~~~-~~------~~~~~~~-----  220 (323)
T cd05575         158 GTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRD--TA---EMYDNILNK-PL------RLKPNIS-----  220 (323)
T ss_pred             CChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCC--HH---HHHHHHHcC-CC------CCCCCCC-----
Confidence            8999999999999999999999999999999999999986531  11   111111111 00      1111111     


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCAS  941 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~  941 (966)
                       .++.+++.+|++.||++||+++
T Consensus       221 -~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         221 -VSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             -HHHHHHHHHHhhcCHHhCCCCC
Confidence             2456677899999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=7.6e-33  Score=309.49  Aligned_cols=189  Identities=20%  Similarity=0.357  Sum_probs=160.2

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEecc-CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV-NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~-~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      +....+|.|++|.||+++...++..+|+|.+... .......+.+|+..+.+ ++|||||+++++|.+++..++||||++
T Consensus         8 ~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~   86 (333)
T cd06650           8 EKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHE-CNSPYIVGFYGAFYSDGEISICMEHMD   86 (333)
T ss_pred             heeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHH-CCCCcccceeEEEEECCEEEEEEecCC
Confidence            3455679999999999999888888888877543 22223457788888877 699999999999999999999999999


Q ss_pred             CCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----CCCC
Q 002105          765 GKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----DSKS  837 (966)
Q Consensus       765 ~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----~~~~  837 (966)
                      +|+|.++++   .+++.....++.+++.||+|||+.  .+|+||||||+||+++.+.  .++++|||++...    ....
T Consensus        87 ~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~--~~ivH~dlkp~Nili~~~~--~~kL~Dfg~~~~~~~~~~~~~  162 (333)
T cd06650          87 GGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRG--EIKLCDFGVSGQLIDSMANSF  162 (333)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhc--CCEEecCCChhhEEEcCCC--CEEEeeCCcchhhhhhccccC
Confidence            999999986   378888899999999999999952  3699999999999998654  4788999987532    2234


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCC
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADA  879 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~  879 (966)
                      .++..|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus       163 ~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~  204 (333)
T cd06650         163 VGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPP  204 (333)
T ss_pred             CCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence            688999999999988899999999999999999999999864

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=5e-33  Score=304.71  Aligned_cols=250  Identities=20%  Similarity=0.272  Sum_probs=184.6

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ...+|+|++|.||+++...++..||+|++.....  ...+.+.+|+..+.+ ++|||||++++++..++..|+||||+++
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~~   84 (287)
T cd07848           6 LGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRT-LKQENIVELKEAFRRRGKLYLVFEYVEK   84 (287)
T ss_pred             EEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHh-CCCccccchhhhEecCCEEEEEEecCCC
Confidence            4456899999999999988899999999865422  223456778877766 7999999999999999999999999999


Q ss_pred             CCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-------C
Q 002105          766 KELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------S  835 (966)
Q Consensus       766 g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-------~  835 (966)
                      +.+..+.+   .+++.....++.|++.||+|||   ..+|+||||||+||+++.+.  .++++|||++....       .
T Consensus        85 ~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dlkp~Nill~~~~--~~kl~Dfg~~~~~~~~~~~~~~  159 (287)
T cd07848          85 NMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCH---KNDIVHRDIKPENLLISHND--VLKLCDFGFARNLSEGSNANYT  159 (287)
T ss_pred             CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCC--cEEEeeccCccccccccccccc
Confidence            88776654   4889999999999999999999   56899999999999998654  57889999875421       1


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHH-----------HhhccCcccccc
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWAR-----------YCYSDCHLDTWV  904 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~  904 (966)
                      ...|++.|+|||++.+..++.++|||||||++|||++|+.||.+...... ......           ....+.......
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (287)
T cd07848         160 EYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQ-LFTIQKVLGPLPAEQMKLFYSNPRFHGLR  238 (287)
T ss_pred             ccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHhhCCCCHHHHHhhhccchhcccc
Confidence            23578899999999988899999999999999999999999975422111 101000           000000000000


Q ss_pred             cccccCCCcchH-----HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          905 DPFIRGHVSSIQ-----NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       905 d~~~~~~~~~~~-----~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .|.... .....     ....++.+++.+|++.||++|||++|+++
T Consensus       239 ~~~~~~-~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~  283 (287)
T cd07848         239 FPAVNH-PQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN  283 (287)
T ss_pred             cCcccC-cccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            010000 00000     01234778889999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.2e-33  Score=278.95  Aligned_cols=234  Identities=22%  Similarity=0.341  Sum_probs=185.6

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccc--------cchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITT--------SSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~--------~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ..|+|+.++|-++...++|.++|||++........        ++-..|+..+.+..-||+|+++.++|+++...++|+|
T Consensus        24 ilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~sF~FlVFd  103 (411)
T KOG0599|consen   24 ILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDAFVFLVFD  103 (411)
T ss_pred             HhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcchhhhhhh
Confidence            45777888899999999999999999865432211        1235778888888899999999999999999999999


Q ss_pred             ccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC---
Q 002105          762 YIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS---  835 (966)
Q Consensus       762 y~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~---  835 (966)
                      .|+.|.|.+||..   +++.+.++|..|+.+|++|||   ...|||||+||+|||+|++.  .++++|||++.....   
T Consensus       104 l~prGELFDyLts~VtlSEK~tR~iMrqlfegVeylH---a~~IVHRDLKpENILlddn~--~i~isDFGFa~~l~~Gek  178 (411)
T KOG0599|consen  104 LMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYLH---ARNIVHRDLKPENILLDDNM--NIKISDFGFACQLEPGEK  178 (411)
T ss_pred             hcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHHH---HhhhhhcccChhheeecccc--ceEEeccceeeccCCchh
Confidence            9999999999973   889999999999999999999   56899999999999999765  478999999876432   


Q ss_pred             --CCcCCcccccccccCC------CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhcc---Ccccccc
Q 002105          836 --KSINSSAYVAPETKES------KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD---CHLDTWV  904 (966)
Q Consensus       836 --~~~~~~~y~aPE~~~~------~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  904 (966)
                        ..+|||+|.|||.+..      ..|+..+|.||.|||||.++.|.+||...    ..+ -..+...++   ...++| 
T Consensus       179 LrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHR----kQm-lMLR~ImeGkyqF~speW-  252 (411)
T KOG0599|consen  179 LRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHR----KQM-LMLRMIMEGKYQFRSPEW-  252 (411)
T ss_pred             HHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHH----HHH-HHHHHHHhcccccCCcch-
Confidence              2489999999998653      46888999999999999999999998532    111 122222221   112222 


Q ss_pred             cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          905 DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       905 d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                                 .+--.++.+++.+|++.||.+|-|++|+++
T Consensus       253 -----------adis~~~KdLIsrlLqVdp~~Ritake~La  282 (411)
T KOG0599|consen  253 -----------ADISATVKDLISRLLQVDPTKRITAKEALA  282 (411)
T ss_pred             -----------hhccccHHHHHHHHHeeCchhcccHHHHhc
Confidence                       222235667888999999999999999874

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=2.5e-33  Score=312.83  Aligned_cols=233  Identities=21%  Similarity=0.313  Sum_probs=179.5

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +|+|++|.||+++...++..||+|.+.....   ...+.+..|+..+.+..+|||||++++++..++..|+||||+++|+
T Consensus         3 lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~~~   82 (329)
T cd05618           3 IGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGD   82 (329)
T ss_pred             eeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCCCC
Confidence            6899999999999988999999999865321   1223456677777775689999999999999999999999999999


Q ss_pred             HHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCCCc
Q 002105          768 LSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSKSI  838 (966)
Q Consensus       768 L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~~~  838 (966)
                      |..++.   .+++.....++.|++.||+|||   ..+|+||||||+||+++.+.  .++++|||++...      .....
T Consensus        83 L~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dikp~Nili~~~~--~~kL~DfG~~~~~~~~~~~~~~~~  157 (329)
T cd05618          83 LMFHMQRQRKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEG--HIKLTDYGMCKEGLRPGDTTSTFC  157 (329)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEECCCC--CEEEeeCCccccccCCCCcccccc
Confidence            998885   4889999999999999999999   55899999999999998654  5789999987532      12346


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc---hhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV---HESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ||+.|+|||++.+..++.++|||||||++|||+||+.||......   .....++..........      .+....+  
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~------~~p~~~~--  229 (329)
T cd05618         158 GTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQI------RIPRSLS--  229 (329)
T ss_pred             CCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCCC------CCCCCCC--
Confidence            899999999999999999999999999999999999998631110   11111222221111111      1111111  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCA  940 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~  940 (966)
                          .++.+++.+|++.||++||++
T Consensus       230 ----~~~~~ll~~~L~~dP~~R~~~  250 (329)
T cd05618         230 ----VKAASVLKSFLNKDPKERLGC  250 (329)
T ss_pred             ----HHHHHHHHHHhcCCHHHcCCC
Confidence                245678889999999999984

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=4.7e-33  Score=298.73  Aligned_cols=236  Identities=22%  Similarity=0.334  Sum_probs=183.3

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCH
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL  768 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L  768 (966)
                      .+|+|++|.||+|+...++..+|+|....... .....|..|+..+.+ ++||||++++++|..++..++||||+++|+|
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (252)
T cd05084           2 RIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQ-YSHPNIVRLIGVCTQKQPIYIVMELVQGGDF   80 (252)
T ss_pred             ccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHh-CCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence            36888999999999988999999998754322 223457788877776 6999999999999999999999999999999


Q ss_pred             HHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCC--------
Q 002105          769 SEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK--------  836 (966)
Q Consensus       769 ~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~--------  836 (966)
                      .++++.    ++|.....++.|++.||+|||   ..+|+||||||+||+++.+.  .+++.|||.+......        
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dl~p~nil~~~~~--~~kl~dfg~~~~~~~~~~~~~~~~  155 (252)
T cd05084          81 LTFLRTEGPRLKVKELIQMVENAAAGMEYLE---SKHCIHRDLAARNCLVTEKN--VLKISDFGMSREEEDGVYASTGGM  155 (252)
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchheEEEcCCC--cEEECccccCcccccccccccCCC
Confidence            999853    789999999999999999999   56899999999999998654  4788999987542211        


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...+..|+|||++.++.++.++|||||||++|||++ |..|+.....  ........   ...      .+.....    
T Consensus       156 ~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~--~~~~~~~~---~~~------~~~~~~~----  220 (252)
T cd05084         156 KQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSN--QQTREAIE---QGV------RLPCPEL----  220 (252)
T ss_pred             CCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCH--HHHHHHHH---cCC------CCCCccc----
Confidence            112346999999999899999999999999999998 8888754311  11111111   110      0001111    


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                        ...++.+++.+|++.+|++|||+.||.++|+
T Consensus       221 --~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  251 (252)
T cd05084         221 --CPDAVYRLMERCWEYDPGQRPSFSTVHQELQ  251 (252)
T ss_pred             --CCHHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence              1235677889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=2.6e-33  Score=319.32  Aligned_cols=188  Identities=18%  Similarity=0.306  Sum_probs=159.5

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc---cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI---TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~---~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .+..+|+|++|.||+|+...++..||+|++......   ..+.+..|+..+.+ ++|||||++++++.+++..|+||||+
T Consensus         5 ~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~-l~h~~iv~l~~~~~~~~~~~lv~E~~   83 (381)
T cd05626           5 KIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAE-ADNEWVVKLYYSFQDKDNLYFVMDYI   83 (381)
T ss_pred             EEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHh-cCCCCeeeeEEEEecCCEEEEEEecC
Confidence            455689999999999999999999999998653221   22346677776666 79999999999999999999999999


Q ss_pred             CCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-------
Q 002105          764 EGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-------  833 (966)
Q Consensus       764 ~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-------  833 (966)
                      ++|+|.+++..   +++.....++.||+.||+|||   ..+|+||||||+|||++.+  .+++++|||++...       
T Consensus        84 ~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH---~~givHrDlKp~Nili~~~--~~~kL~DFGl~~~~~~~~~~~  158 (381)
T cd05626          84 PGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVH---KMGFIHRDIKPDNILIDLD--GHIKLTDFGLCTGFRWTHNSK  158 (381)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCcHHHEEECCC--CCEEEeeCcCCcccccccccc
Confidence            99999999853   788888899999999999999   5699999999999999865  45788999975310       


Q ss_pred             ----------------------------------------------CCCCcCCcccccccccCCCCCCCcchHHHHHHHH
Q 002105          834 ----------------------------------------------DSKSINSSAYVAPETKESKDITEKGDIYGFGLIL  867 (966)
Q Consensus       834 ----------------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l  867 (966)
                                                                    ....+||+.|||||++.+..++.++|||||||++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il  238 (381)
T cd05626         159 YYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVIL  238 (381)
T ss_pred             cccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHH
Confidence                                                          0123689999999999988999999999999999


Q ss_pred             HHHHcCCCCCCCC
Q 002105          868 IDLLTGKSPADAD  880 (966)
Q Consensus       868 ~el~tg~~p~~~~  880 (966)
                      |||+||+.||...
T Consensus       239 ~elltG~~Pf~~~  251 (381)
T cd05626         239 FEMLVGQPPFLAP  251 (381)
T ss_pred             HHHHhCCCCCcCC
Confidence            9999999999754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=4.5e-33  Score=314.24  Aligned_cols=239  Identities=18%  Similarity=0.330  Sum_probs=179.8

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .+..+|+|++|.||+++...+++.||||++..... .....+.+|++.+.+ ++|||||++++++..++..++||||+++
T Consensus        78 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~~  156 (353)
T PLN00034         78 RVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRD-VNHPNVVKCHDMFDHNGEIQVLLEFMDG  156 (353)
T ss_pred             hhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHh-CCCCCcceeeeEeccCCeEEEEEecCCC
Confidence            34567999999999999988999999999854322 223457778877777 7999999999999999999999999999


Q ss_pred             CCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CCCcC
Q 002105          766 KELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SKSIN  839 (966)
Q Consensus       766 g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~~~~  839 (966)
                      |+|.+.. ..++.....++.||+.||+|||   ..+|+||||||+||+++.+.  .++++|||++....      ....|
T Consensus       157 ~~L~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~--~~kL~DfG~~~~~~~~~~~~~~~~g  230 (353)
T PLN00034        157 GSLEGTH-IADEQFLADVARQILSGIAYLH---RRHIVHRDIKPSNLLINSAK--NVKIADFGVSRILAQTMDPCNSSVG  230 (353)
T ss_pred             Ccccccc-cCCHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCC--CEEEcccccceeccccccccccccc
Confidence            9997643 3567777889999999999999   55899999999999999654  57889999876432      23468


Q ss_pred             CcccccccccCC-----CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          840 SSAYVAPETKES-----KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       840 ~~~y~aPE~~~~-----~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      |..|+|||++..     ...+.++|||||||++|||++|+.||......     +|..........   ..+......  
T Consensus       231 t~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~--  300 (353)
T PLN00034        231 TIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQG-----DWASLMCAICMS---QPPEAPATA--  300 (353)
T ss_pred             CccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCc-----cHHHHHHHHhcc---CCCCCCCcc--
Confidence            999999998743     23456899999999999999999998732111     111110000000   001111111  


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                          ..++.+++.+||+.||++||++.||++.
T Consensus       301 ----~~~l~~li~~~l~~~P~~Rpt~~ell~h  328 (353)
T PLN00034        301 ----SREFRHFISCCLQREPAKRWSAMQLLQH  328 (353)
T ss_pred             ----CHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                1356678889999999999999999864

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=7e-33  Score=305.97  Aligned_cols=253  Identities=20%  Similarity=0.304  Sum_probs=183.1

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      +.....+|.|++|.||+|+...++..||+|++...... ....+.+|+..+.+ ++|||||++++++.+++..++||||+
T Consensus         7 y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~lv~e~~   85 (303)
T cd07869           7 YEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKG-LKHANIVLLHDIIHTKETLTLVFEYV   85 (303)
T ss_pred             ceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhh-CCCCCcCeEEEEEecCCeEEEEEECC
Confidence            34456679999999999999889999999988643322 22345677777766 79999999999999999999999999


Q ss_pred             CCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          764 EGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       764 ~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      + |+|.+++.    .+++.....++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||.+....     
T Consensus        86 ~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~--~~kl~Dfg~~~~~~~~~~~  159 (303)
T cd07869          86 H-TDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIH---QRYILHRDLKPQNLLISDTG--ELKLADFGLARAKSVPSHT  159 (303)
T ss_pred             C-cCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCC--CEEECCCCcceeccCCCcc
Confidence            6 68877775    2788899999999999999999   56899999999999998654  47899999875421     


Q ss_pred             -CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccc--------c
Q 002105          835 -SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTW--------V  904 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~  904 (966)
                       ....+++.|+|||++.+ ..++.++||||+||++|||+||+.||.+.....+.+ +.............|        .
T Consensus       160 ~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  238 (303)
T cd07869         160 YSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQL-ERIFLVLGTPNEDTWPGVHSLPHF  238 (303)
T ss_pred             CCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHH-HHHHHHhCCCChhhccchhhcccc
Confidence             23457889999998765 457899999999999999999999997543222211 111111110000000        0


Q ss_pred             cccccC--CCcchHH------HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          905 DPFIRG--HVSSIQN------EIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       905 d~~~~~--~~~~~~~------~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +|....  ......+      ...++.+++.+|++.||++|||++|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~  287 (303)
T cd07869         239 KPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALS  287 (303)
T ss_pred             ccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhc
Confidence            000000  0000000      0134567888999999999999999874

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=4.1e-33  Score=311.87  Aligned_cols=244  Identities=20%  Similarity=0.291  Sum_probs=184.6

Q ss_pred             cccCCCCCccEEEEEEEec-----CCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEec-CCeeEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLA-----NDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRS-EKAAYLVY  760 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~-----~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~-~~~~~lv~  760 (966)
                      ...+|.|+||.||+|+...     +++.||+|++...... ..+.+..|+..+.++.+|||||+++++|.. +...++||
T Consensus        12 ~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~~~~v~   91 (337)
T cd05054          12 GKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGPLMVIV   91 (337)
T ss_pred             hcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCCEEEEE
Confidence            3457999999999997533     3468999987543221 223466788877774489999999998875 45788999


Q ss_pred             EccCCCCHHHHHH----------------------------------------------------------------cCC
Q 002105          761 EYIEGKELSEVLR----------------------------------------------------------------NLS  776 (966)
Q Consensus       761 Ey~~~g~L~~~l~----------------------------------------------------------------~l~  776 (966)
                      ||+++|+|.++++                                                                .++
T Consensus        92 ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  171 (337)
T cd05054          92 EYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYKEPLT  171 (337)
T ss_pred             ecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHhhcCCC
Confidence            9999999999884                                                                368


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--------CCCcCCcccccccc
Q 002105          777 WERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--------SKSINSSAYVAPET  848 (966)
Q Consensus       777 ~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~  848 (966)
                      |..+.+++.||+.||+|||   ..+|+||||||+||+++++  ..++++|||++....        ....++..|||||+
T Consensus       172 ~~~~~~~~~qi~~aL~~lH---~~~ivHrDikp~Nill~~~--~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~  246 (337)
T cd05054         172 LEDLISYSFQVARGMEFLA---SRKCIHRDLAARNILLSEN--NVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPES  246 (337)
T ss_pred             HHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEeCC--CcEEEeccccchhcccCcchhhccCCCCCccccCcHH
Confidence            8999999999999999999   5699999999999999965  457899999876421        12234568999999


Q ss_pred             cCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHH
Q 002105          849 KESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLAL  927 (966)
Q Consensus       849 ~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~  927 (966)
                      +.+..++.++|||||||++|||+| |+.||.+... .+......    .....     +....      ....++.+++.
T Consensus       247 ~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~-~~~~~~~~----~~~~~-----~~~~~------~~~~~~~~l~~  310 (337)
T cd05054         247 IFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQI-DEEFCRRL----KEGTR-----MRAPE------YATPEIYSIML  310 (337)
T ss_pred             hcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCc-cHHHHHHH----hccCC-----CCCCc------cCCHHHHHHHH
Confidence            999999999999999999999998 9999865321 11111111    11100     00011      11235778889


Q ss_pred             HccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          928 HCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       928 ~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      +||+.+|++||++.||+++|++++.
T Consensus       311 ~cl~~~p~~RPs~~ell~~l~~~~~  335 (337)
T cd05054         311 DCWHNNPEDRPTFSELVEILGDLLQ  335 (337)
T ss_pred             HHccCChhhCcCHHHHHHHHHHHHh
Confidence            9999999999999999999998654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=1.1e-32  Score=299.05  Aligned_cols=239  Identities=20%  Similarity=0.317  Sum_probs=183.6

Q ss_pred             CCCCCccEEEEEEEecCCc--EEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDM--QFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~--~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +|+||+|.||+|+...++.  .+|+|++.... ....+.+..|+..+.++-+||||++++++|...+..++||||+++|+
T Consensus         3 lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   82 (270)
T cd05047           3 IGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGN   82 (270)
T ss_pred             CCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCCCc
Confidence            6889999999999877665  45777765432 22334677888888884489999999999999999999999999999


Q ss_pred             HHHHHHc-------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccc
Q 002105          768 LSEVLRN-------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPG  828 (966)
Q Consensus       768 L~~~l~~-------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~  828 (966)
                      |.++++.                   +++.++..++.|++.|++|||   ..+++||||||+||+++++  ..++++|||
T Consensus        83 L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH---~~~i~H~dikp~nili~~~--~~~kl~dfg  157 (270)
T cd05047          83 LLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGEN--YVAKIADFG  157 (270)
T ss_pred             HHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccccceEEEcCC--CeEEECCCC
Confidence            9999852                   678899999999999999999   5699999999999999865  457889999


Q ss_pred             cceecC-----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccc
Q 002105          829 LAYCTD-----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDT  902 (966)
Q Consensus       829 ~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  902 (966)
                      ++....     .....+..|+|||+.....++.++|||||||++|||+| |+.||....  .....+..   ......  
T Consensus       158 l~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~--~~~~~~~~---~~~~~~--  230 (270)
T cd05047         158 LSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT--CAELYEKL---PQGYRL--  230 (270)
T ss_pred             CccccchhhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccC--HHHHHHHH---hCCCCC--
Confidence            874321     11223557999999988899999999999999999997 999986431  11111111   111000  


Q ss_pred             cccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 002105          903 WVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCF  951 (966)
Q Consensus       903 ~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~  951 (966)
                        +  ...      ....++.+++.+||+.+|.+|||+.|++.+|++++
T Consensus       231 --~--~~~------~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~~  269 (270)
T cd05047         231 --E--KPL------NCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML  269 (270)
T ss_pred             --C--CCC------cCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHhh
Confidence              0  000      11135678889999999999999999999998743

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=8.6e-33  Score=302.88  Aligned_cols=251  Identities=20%  Similarity=0.289  Sum_probs=183.5

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .....+|.|++|.||+|+...++..||+|++..... .....+.+|+..+.+ ++|||||++++++..++..++||||++
T Consensus         8 ~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~lv~e~~~   86 (288)
T cd07871           8 VKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKN-LKHANIVTLHDIIHTERCLTLVFEYLD   86 (288)
T ss_pred             eEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHh-CCCCCEeeEEEEEcCCCeEEEEEeCCC
Confidence            345567999999999999988999999998854322 223456778887777 799999999999999999999999998


Q ss_pred             CCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          765 GKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       765 ~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                       |+|.+++..    +++.....++.||+.||+|||   +.+|+||||||+||+++.+.  .++++|||.+....      
T Consensus        87 -~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~Nil~~~~~--~~kl~DfG~~~~~~~~~~~~  160 (288)
T cd07871          87 -SDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCH---KRKILHRDLKPQNLLINEKG--ELKLADFGLARAKSVPTKTY  160 (288)
T ss_pred             -cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCC--CEEECcCcceeeccCCCccc
Confidence             499998853    688899999999999999999   56999999999999998654  47899999875422      


Q ss_pred             CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcc------------c
Q 002105          835 SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHL------------D  901 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~------------~  901 (966)
                      ....+++.|+|||++.+ ..++.++||||+||++|||+||+.||.+... .+.+ ............            .
T Consensus       161 ~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  238 (288)
T cd07871         161 SNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTV-KEEL-HLIFRLLGTPTEETWPGITSNEEFR  238 (288)
T ss_pred             cCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHH-HHHHHHhCCCChHHhhccccchhhh
Confidence            22457889999998765 5689999999999999999999999975422 1111 111111100000            0


Q ss_pred             ccccccccCCCc--chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          902 TWVDPFIRGHVS--SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       902 ~~~d~~~~~~~~--~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ....|.......  .....-.+..+++.+|++.||.+|||++|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~  284 (288)
T cd07871         239 SYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALR  284 (288)
T ss_pred             ccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            000111000000  00001124567888999999999999999874

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=9.9e-33  Score=297.87  Aligned_cols=239  Identities=18%  Similarity=0.308  Sum_probs=186.3

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .....+|+|++|.||+|.. .++..||+|++... ....+.+..|+..+.+ ++||||+++++++..++..++||||+++
T Consensus         9 ~~~~~lg~g~~g~v~~~~~-~~~~~v~iK~~~~~-~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~   85 (261)
T cd05072           9 KLVKKLGAGQFGEVWMGYY-NNSTKVAVKTLKPG-TMSVQAFLEEANLMKT-LQHDKLVRLYAVVTKEEPIYIITEYMAK   85 (261)
T ss_pred             EEeeecCCcCCceEEEEEe-cCCceEEEEEccCC-chhHHHHHHHHHHHHh-CCCCCeeeEEEEEcCCCCcEEEEecCCC
Confidence            3445679999999999986 67778999987542 2234567777777776 7999999999999999999999999999


Q ss_pred             CCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-----
Q 002105          766 KELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----  835 (966)
Q Consensus       766 g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-----  835 (966)
                      |+|.++++.     +++.++..++.|++.||+|||   ..+++||||||+||+++.+.  .+++.|||.+.....     
T Consensus        86 ~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH---~~~i~H~dl~p~nili~~~~--~~~l~dfg~~~~~~~~~~~~  160 (261)
T cd05072          86 GSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIE---RKNYIHRDLRAANVLVSESL--MCKIADFGLARVIEDNEYTA  160 (261)
T ss_pred             CcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhhEEecCCC--cEEECCCccceecCCCceec
Confidence            999999853     789999999999999999999   55899999999999999654  468889998764321     


Q ss_pred             --CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          836 --KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       836 --~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                        ...++..|+|||+.....++.++|||||||++|||+| |+.||....  ......+...   ..     ..|.. ...
T Consensus       161 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~--~~~~~~~~~~---~~-----~~~~~-~~~  229 (261)
T cd05072         161 REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMS--NSDVMSALQR---GY-----RMPRM-ENC  229 (261)
T ss_pred             cCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCC--HHHHHHHHHc---CC-----CCCCC-CCC
Confidence              1234567999999988889999999999999999999 999986532  1112122211   10     01111 111


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                            ..++.+++.+|++.+|++||+++++.+.|++
T Consensus       230 ------~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  260 (261)
T cd05072         230 ------PDELYDIMKTCWKEKAEERPTFDYLQSVLDD  260 (261)
T ss_pred             ------CHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence                  1356678899999999999999999999986

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=5.7e-34  Score=317.80  Aligned_cols=231  Identities=23%  Similarity=0.284  Sum_probs=180.5

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +|+|++|.||+++...+|..+|+|.+....   ......+..|+..+.+.++|||||++++++..++..|+||||+++|+
T Consensus         3 lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~   82 (325)
T cd05604           3 IGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNGGE   82 (325)
T ss_pred             eeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCCCC
Confidence            688999999999998899999999986432   12233456666666666899999999999999999999999999999


Q ss_pred             HHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCCCc
Q 002105          768 LSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSKSI  838 (966)
Q Consensus       768 L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~~~  838 (966)
                      |..++.   .+++.....++.||++||+|||   +.+|+||||||+||+++.+.  .+++.|||++...      .....
T Consensus        83 L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH---~~givH~Dlkp~NIll~~~~--~~kL~DfG~~~~~~~~~~~~~~~~  157 (325)
T cd05604          83 LFFHLQRERSFPEPRARFYAAEIASALGYLH---SINIVYRDLKPENILLDSQG--HVVLTDFGLCKEGIAQSDTTTTFC  157 (325)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCC--CEEEeecCCcccCCCCCCCccccc
Confidence            998885   3789999999999999999999   56999999999999999765  5789999987532      12346


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      ||+.|||||++.+..++.++|||||||++|||++|+.||.... ..+.    ....... ..  ...|    ..+     
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~-~~~~----~~~~~~~-~~--~~~~----~~~-----  220 (325)
T cd05604         158 GTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRD-VAEM----YDNILHK-PL--VLRP----GAS-----  220 (325)
T ss_pred             CChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCC-HHHH----HHHHHcC-Cc--cCCC----CCC-----
Confidence            8999999999999999999999999999999999999986531 1111    1111111 00  0111    111     


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVT  944 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~  944 (966)
                       .++.+++.+|++.+|.+||++++.+
T Consensus       221 -~~~~~ll~~ll~~~p~~R~~~~~~~  245 (325)
T cd05604         221 -LTAWSILEELLEKDRQRRLGAKEDF  245 (325)
T ss_pred             -HHHHHHHHHHhccCHHhcCCCCCCH
Confidence             2455677899999999999986433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=4.2e-33  Score=304.61  Aligned_cols=255  Identities=19%  Similarity=0.249  Sum_probs=184.5

Q ss_pred             ccccCCCCCccEEEEEE----EecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecC--CeeEEE
Q 002105          687 NLTSRGKKGVSSSYKVR----SLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--KAAYLV  759 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~----~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--~~~~lv  759 (966)
                      ....+|+|++|.||.+.    ...++..||+|.+..... .....|.+|+..+.+ ++||||++++++|...  ...++|
T Consensus         8 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~~~lv   86 (283)
T cd05080           8 KIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKT-LYHENIVKYKGCCSEQGGKGLQLI   86 (283)
T ss_pred             eceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHh-CCCCCEeeEEEEEecCCCceEEEE
Confidence            34567899999997754    335677899998764322 234567788887777 6999999999998753  468999


Q ss_pred             EEccCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC--
Q 002105          760 YEYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--  835 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~--  835 (966)
                      |||+++|+|.+++.  .++|..+..++.|++.|++|||   ..+|+||||||+||+++.+.  .++++|||.+.....  
T Consensus        87 ~e~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~l~~lH---~~~i~H~dlkp~Nili~~~~--~~~l~dfg~~~~~~~~~  161 (283)
T cd05080          87 MEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLH---SQHYIHRDLAARNVLLDNDR--LVKIGDFGLAKAVPEGH  161 (283)
T ss_pred             ecCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccChheEEEcCCC--cEEEeecccccccCCcc
Confidence            99999999999986  4899999999999999999999   55899999999999998654  468889998754221  


Q ss_pred             -------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccc
Q 002105          836 -------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI  908 (966)
Q Consensus       836 -------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  908 (966)
                             ...++..|+|||+.....++.++|||||||++|||+||+.|+............+..............+...
T Consensus       162 ~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (283)
T cd05080         162 EYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGM  241 (283)
T ss_pred             hhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcCC
Confidence                   1234567999999988889999999999999999999999975422111111011000000000000011000


Q ss_pred             cCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       909 ~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      ....+  .....++.+++..||+.+|++||||++|+++|++
T Consensus       242 ~~~~~--~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~  280 (283)
T cd05080         242 RLPCP--KNCPQEVYILMKNCWETEAKFRPTFRSLIPILKE  280 (283)
T ss_pred             CCCCC--CCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHH
Confidence            00000  1122467788899999999999999999999998

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=4.9e-33  Score=309.15  Aligned_cols=232  Identities=20%  Similarity=0.303  Sum_probs=181.2

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +|+|++|.||+|+...++..||||.+....   ......+..|+..+.+..+||||+++++++...+..|+||||+++|+
T Consensus         3 lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   82 (318)
T cd05570           3 LGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNGGD   82 (318)
T ss_pred             eeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCCCC
Confidence            688999999999998889999999986532   12223455666666654479999999999999999999999999999


Q ss_pred             HHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCCCc
Q 002105          768 LSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSKSI  838 (966)
Q Consensus       768 L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~~~  838 (966)
                      |.+++.   .+++.....++.|++.||+|||   +.+|+||||||+||+++.+.  .+++.|||++...      .....
T Consensus        83 L~~~~~~~~~l~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nill~~~~--~~kl~Dfg~~~~~~~~~~~~~~~~  157 (318)
T cd05570          83 LMFHIQRSGRFDEPRARFYAAEIVLGLQFLH---ERGIIYRDLKLDNVLLDSEG--HIKIADFGMCKEGILGGVTTSTFC  157 (318)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEccCCCHHHeEECCCC--cEEecccCCCeecCcCCCccccee
Confidence            999885   4899999999999999999999   56999999999999999754  5788999987531      12235


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      |++.|+|||++.+..++.++|||||||++|||+||+.||....  .....+..   ...       .+......+     
T Consensus       158 g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~--~~~~~~~i---~~~-------~~~~~~~~~-----  220 (318)
T cd05570         158 GTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDD--EDELFQSI---LED-------EVRYPRWLS-----  220 (318)
T ss_pred             cCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCC--HHHHHHHH---HcC-------CCCCCCcCC-----
Confidence            8899999999999999999999999999999999999997532  11111111   111       011111111     


Q ss_pred             HHHHHHHHHHccCCCCCCCCCH-----HHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCA-----SDVTK  945 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~-----~~v~~  945 (966)
                       .++.+++.+|++.||++||++     .++++
T Consensus       221 -~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~  251 (318)
T cd05570         221 -KEAKSILKSFLTKNPEKRLGCLPTGEQDIKG  251 (318)
T ss_pred             -HHHHHHHHHHccCCHHHcCCCCCCCHHHHhc
Confidence             245677889999999999999     66653

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=1e-32  Score=296.84  Aligned_cols=237  Identities=18%  Similarity=0.307  Sum_probs=184.1

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|+|++|.||+++. .++..+|+|.+... ....++|.+|+..+.+ ++||||++++++|.+.+..++||||+++|
T Consensus         8 ~~~~lg~G~~~~vy~~~~-~~~~~~aik~~~~~-~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (256)
T cd05113           8 FLKELGTGQFGVVKYGKW-RGQYDVAIKMIKEG-SMSEDEFIEEAKVMMK-LSHEKLVQLYGVCTKQRPIYIVTEYMSNG   84 (256)
T ss_pred             EeeEecCcccceEEEEEe-cCCCcEEEEEcCCC-cccHHHHHHHHHHHhc-CCCCCeeeEEEEEccCCCcEEEEEcCCCC
Confidence            345679999999999987 45667999987533 3344568888888877 69999999999999999999999999999


Q ss_pred             CHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-------
Q 002105          767 ELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-------  835 (966)
Q Consensus       767 ~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-------  835 (966)
                      +|.++++    .++|..+.+++.||+.||+|||   ..+++||||||+||+++++.  .++++|+|.+.....       
T Consensus        85 ~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~nili~~~~--~~kl~d~g~~~~~~~~~~~~~~  159 (256)
T cd05113          85 CLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLE---SKQFIHRDLAARNCLVDDQG--CVKVSDFGLSRYVLDDEYTSSV  159 (256)
T ss_pred             cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccCcceEEEcCCC--CEEECCCccceecCCCceeecC
Confidence            9999985    3799999999999999999999   56999999999999998654  578899987653211       


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ...++..|+|||+..+..++.++|||||||++|||+| |+.||....  .....+...   .+..      +.....   
T Consensus       160 ~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~--~~~~~~~~~---~~~~------~~~~~~---  225 (256)
T cd05113         160 GSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFN--NSETVEKVS---QGLR------LYRPHL---  225 (256)
T ss_pred             CCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCC--HHHHHHHHh---cCCC------CCCCCC---
Confidence            1224467999999988889999999999999999999 999986431  111112111   1110      000011   


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                         ...++.+++.+||+.+|.+||++.++++.|+
T Consensus       226 ---~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         226 ---ASEKVYAIMYSCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             ---CCHHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence               1235677888999999999999999998774

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=4.6e-33  Score=275.27  Aligned_cols=248  Identities=21%  Similarity=0.295  Sum_probs=189.1

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .....|+|.+|.||+|++..+|+.|||||+.-.+.  .-.....+|++.+.. ++|||||.++++|-..+.+-||+|||+
T Consensus         6 ~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqe-l~h~nIi~LiD~F~~~~~l~lVfEfm~   84 (318)
T KOG0659|consen    6 KLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQE-LKHPNIIELIDVFPHKSNLSLVFEFMP   84 (318)
T ss_pred             hhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHH-ccCcchhhhhhhccCCCceEEEEEecc
Confidence            34567999999999999999999999999975432  234456899988887 799999999999999999999999999


Q ss_pred             CCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-----
Q 002105          765 GKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----  835 (966)
Q Consensus       765 ~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-----  835 (966)
                       -||+..++.    ++......++.++.+|++|||   ...|+||||||.|+|+++++  .+|++|||++.....     
T Consensus        85 -tdLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H---~~~IlHRDlKPnNLLis~~g--~lKiADFGLAr~f~~p~~~~  158 (318)
T KOG0659|consen   85 -TDLEVVIKDKNIILSPADIKSYMLMTLKGLAYCH---SKWILHRDLKPNNLLISSDG--QLKIADFGLARFFGSPNRIQ  158 (318)
T ss_pred             -ccHHHHhcccccccCHHHHHHHHHHHHHHHHHHH---hhhhhcccCCccceEEcCCC--cEEeecccchhccCCCCccc
Confidence             699999974    788889999999999999999   56899999999999999654  589999999875322     


Q ss_pred             -CCcCCcccccccccC-CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccc--------
Q 002105          836 -KSINSSAYVAPETKE-SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVD--------  905 (966)
Q Consensus       836 -~~~~~~~y~aPE~~~-~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--------  905 (966)
                       ..+-|..|.|||.+. .+.|+..+|+||.|||+.||+-|.+-|.++.+.....  .+-..+.....+.|.+        
T Consensus       159 ~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~--~If~~LGTP~~~~WP~~~~lpdY~  236 (318)
T KOG0659|consen  159 THQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLS--KIFRALGTPTPDQWPEMTSLPDYV  236 (318)
T ss_pred             ccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHH--HHHHHcCCCCcccCccccccccHH
Confidence             235688999999765 5679999999999999999999987776654332221  1111111112222221        


Q ss_pred             -------ccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          906 -------PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       906 -------~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                             |......+   ......++++...+..||.+|.|++|++++
T Consensus       237 ~~~~~P~~~~~~lf~---aas~d~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  237 KIQQFPKPPLNNLFP---AASSDALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             HHhcCCCCccccccc---cccHHHHHHHHhhhccCchhcccHHHHhcc
Confidence                   11111111   122344677778899999999999999875

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=4e-33  Score=311.98  Aligned_cols=236  Identities=20%  Similarity=0.269  Sum_probs=182.2

Q ss_pred             cccccCCCCCccEEEEEEEecCC-cEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLAND-MQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~-~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      .....+|+|++|.||+|.....+ ..||+|++....   ....+.+..|+..+.+ ++|||||++++++.+++..|+|||
T Consensus        33 ~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~-l~hp~Iv~~~~~~~~~~~~~lv~E  111 (340)
T PTZ00426         33 NFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNY-INHPFCVNLYGSFKDESYLYLVLE  111 (340)
T ss_pred             EEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHh-CCCCCCcceEEEEEeCCEEEEEEe
Confidence            44556799999999999875554 689999886432   1223346677777666 799999999999999999999999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---C
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---S  835 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---~  835 (966)
                      |+++|+|.++++   .+++..+..++.|++.||+|||   +.+|+||||||+|||++.+.  .++++|||++....   .
T Consensus       112 y~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~--~ikL~DFG~a~~~~~~~~  186 (340)
T PTZ00426        112 FVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQ---SLNIVYRDLKPENLLLDKDG--FIKMTDFGFAKVVDTRTY  186 (340)
T ss_pred             CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEccCCCHHHEEECCCC--CEEEecCCCCeecCCCcc
Confidence            999999999996   3889999999999999999999   56999999999999998654  57899999886533   2


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...||+.|||||++.+..++.++|||||||++|||+||+.||....  .....+-.   ... .. . .+    ...+  
T Consensus       187 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~--~~~~~~~i---~~~-~~-~-~p----~~~~--  252 (340)
T PTZ00426        187 TLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANE--PLLIYQKI---LEG-II-Y-FP----KFLD--  252 (340)
T ss_pred             eecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCC--HHHHHHHH---hcC-CC-C-CC----CCCC--
Confidence            3468999999999998889999999999999999999999997531  11111111   111 00 0 11    1111  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARP-----CASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RP-----t~~~v~~  945 (966)
                       +   ++.+++.+|++.||++|+     +++|+.+
T Consensus       253 -~---~~~~li~~~l~~dp~~R~~~~~~~~~~~~~  283 (340)
T PTZ00426        253 -N---NCKHLMKKLLSHDLTKRYGNLKKGAQNVKE  283 (340)
T ss_pred             -H---HHHHHHHHHcccCHHHcCCCCCCCHHHHHc
Confidence             2   345677899999999995     7887754

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=4.7e-33  Score=310.71  Aligned_cols=232  Identities=21%  Similarity=0.292  Sum_probs=178.5

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +|+|++|.||+++...++..||+|.+.....   ...+.+..|...+.++.+|||||++++++.+++..|+|||||++|+
T Consensus         3 lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~g~   82 (329)
T cd05588           3 IGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSGGD   82 (329)
T ss_pred             EeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCCCC
Confidence            5889999999999988999999999865321   1223356666666664479999999999999999999999999999


Q ss_pred             HHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCCCc
Q 002105          768 LSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSKSI  838 (966)
Q Consensus       768 L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~~~  838 (966)
                      |.+++.   .+++..+..++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||++...      .....
T Consensus        83 L~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nili~~~~--~~kL~Dfg~~~~~~~~~~~~~~~~  157 (329)
T cd05588          83 LMFHMQRQRKLPEEHARFYSAEISLALNFLH---ERGIIYRDLKLDNVLLDAEG--HIKLTDYGMCKEGIRPGDTTSTFC  157 (329)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCC--CEEECcCccccccccCCCcccccc
Confidence            998885   4899999999999999999999   56999999999999998654  5788999987531      12346


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc---hhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV---HESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ||+.|+|||++.+..++.++|||||||++|||+||+.||+.....   .....++..........      .+....+  
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~------~~p~~~~--  229 (329)
T cd05588         158 GTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQI------RIPRSLS--  229 (329)
T ss_pred             CCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCCC------CCCCCCC--
Confidence            899999999999999999999999999999999999999632110   11111222221111111      1111111  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCC
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPC  939 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt  939 (966)
                          .++.+++.+|++.||.+||+
T Consensus       230 ----~~~~~li~~~L~~dP~~R~~  249 (329)
T cd05588         230 ----VKASSVLKGFLNKDPKERLG  249 (329)
T ss_pred             ----HHHHHHHHHHhccCHHHcCC
Confidence                24567788999999999998

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=8.9e-33  Score=299.26  Aligned_cols=242  Identities=19%  Similarity=0.305  Sum_probs=188.7

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ..+|.|++|.||+++...++..+|||++.....   ....++..|+..+.+ ++||||+++++++.+++..++||||+++
T Consensus         8 ~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~-~~h~~i~~~~~~~~~~~~~~~v~e~~~~   86 (267)
T cd08229           8 KKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQ-LNHPNVIKYYASFIEDNELNIVLELADA   86 (267)
T ss_pred             hhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHH-ccCCchhhhhheeEeCCeEEEEEEecCC
Confidence            346888999999999988999999998864322   223457778877777 6999999999999999999999999999


Q ss_pred             CCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          766 KELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       766 g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      ++|.++++       .++|.....++.+|+.|++|||   ..+++|+||||+||+++.+.  .+++.|+|.+....    
T Consensus        87 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~p~nili~~~~--~~~l~dfg~~~~~~~~~~  161 (267)
T cd08229          87 GDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATG--VVKLGDLGLGRFFSSKTT  161 (267)
T ss_pred             CCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCC--CEEECcchhhhccccCCc
Confidence            99999885       2789999999999999999999   56999999999999998654  57888998764321    


Q ss_pred             --CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 --SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 --~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                        ....++..|+|||+..+..++.++||||||+++|||++|..||........   ++...... .     ..|....  
T Consensus       162 ~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~---~~~~~~~~-~-----~~~~~~~--  230 (267)
T cd08229         162 AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLY---SLCKKIEQ-C-----DYPPLPS--  230 (267)
T ss_pred             ccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchHH---HHhhhhhc-C-----CCCCCCc--
Confidence              123578899999999988899999999999999999999999864321111   11111100 0     1111110  


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESC  950 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~  950 (966)
                         .....++.+++.+||+.+|++||||.+|+++++++
T Consensus       231 ---~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~  265 (267)
T cd08229         231 ---DHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRM  265 (267)
T ss_pred             ---ccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhh
Confidence               11223566788899999999999999999999873

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=3e-33  Score=314.12  Aligned_cols=245  Identities=22%  Similarity=0.318  Sum_probs=179.3

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecC-----CeeEEEEE
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE-----KAAYLVYE  761 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~-----~~~~lv~E  761 (966)
                      ..+|+|++|.||+|+...++..||||++....  ......+.+|+..+.+ ++|||||++++++...     ...|+|||
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~-l~hpniv~~~~~~~~~~~~~~~~~~lv~e   84 (338)
T cd07859           6 EVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRL-LRHPDIVEIKHIMLPPSRREFKDIYVVFE   84 (338)
T ss_pred             EEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHh-CCCCCEeeecceEeccCCCCCceEEEEEe
Confidence            45688999999999998899999999986431  1223457788887777 7999999999998643     24799999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      ||+ ++|.+++.   .+++.....++.||++||+|||   +.+|+||||||+||+++.+.  .++++|||++....    
T Consensus        85 ~~~-~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~--~~kL~Dfg~~~~~~~~~~  158 (338)
T cd07859          85 LME-SDLHQVIKANDDLTPEHHQFFLYQLLRALKYIH---TANVFHRDLKPKNILANADC--KLKICDFGLARVAFNDTP  158 (338)
T ss_pred             cCC-CCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCC--cEEEccCccccccccccC
Confidence            996 68999886   4899999999999999999999   55899999999999998654  47889999875321    


Q ss_pred             -----CCCcCCcccccccccCC--CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccC---------
Q 002105          835 -----SKSINSSAYVAPETKES--KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDC---------  898 (966)
Q Consensus       835 -----~~~~~~~~y~aPE~~~~--~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~---------  898 (966)
                           ....||+.|+|||++.+  ..++.++|||||||++|||+||+.||.+.... ... +.+.......         
T Consensus       159 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~-~~~-~~~~~~~~~~~~~~~~~i~  236 (338)
T cd07859         159 TAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVV-HQL-DLITDLLGTPSPETISRVR  236 (338)
T ss_pred             ccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChH-HHH-HHHHHHhCCCCHHHHHHhh
Confidence                 22468899999999865  67899999999999999999999998654211 100 1111000000         


Q ss_pred             --ccccc---cc---c-cccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          899 --HLDTW---VD---P-FIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       899 --~~~~~---~d---~-~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                        .....   +.   + ......+.   ...++.+++.+|++.||++|||++|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~~P~~Rpt~~e~l~  289 (338)
T cd07859         237 NEKARRYLSSMRKKQPVPFSQKFPN---ADPLALRLLERLLAFDPKDRPTAEEALA  289 (338)
T ss_pred             hhhHHHHHHhhcccCCCchHHhcCC---CChHHHHHHHHHcCcCcccCCCHHHHhc
Confidence              00000   00   0 00000000   1134567889999999999999999984

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=2.3e-33  Score=312.90  Aligned_cols=232  Identities=22%  Similarity=0.273  Sum_probs=180.5

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +|+|++|.||+++...+|..||+|.+.....   .....+..|+..+.+ ++||||+++++++..++..|+||||+++|+
T Consensus         3 lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~-~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~   81 (325)
T cd05594           3 LGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQN-SRHPFLTALKYSFQTHDRLCFVMEYANGGE   81 (325)
T ss_pred             eeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHh-CCCCCCCceEEEEEcCCEEEEEEeCCCCCc
Confidence            5889999999999988999999999864321   122345566666655 799999999999999999999999999999


Q ss_pred             HHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CCCc
Q 002105          768 LSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SKSI  838 (966)
Q Consensus       768 L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~~~  838 (966)
                      |.+++.   .+++.....++.||+.||+|||.  ..+|+||||||+||+++.+.  .++++|||++....      ....
T Consensus        82 L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~--~~~ivHrDikp~NIll~~~~--~~kL~Dfg~~~~~~~~~~~~~~~~  157 (325)
T cd05594          82 LFFHLSRERVFSEDRARFYGAEIVSALDYLHS--EKNVVYRDLKLENLMLDKDG--HIKITDFGLCKEGIKDGATMKTFC  157 (325)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh--cCCEEecCCCCCeEEECCCC--CEEEecCCCCeecCCCCccccccc
Confidence            999885   38899999999999999999994  15899999999999999654  57889999875321      2245


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      ||+.|||||++.+..++.++|||||||++|||+||+.||....  .+...+...   .. .      ..+....+     
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~--~~~~~~~i~---~~-~------~~~p~~~~-----  220 (325)
T cd05594         158 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD--HEKLFELIL---ME-E------IRFPRTLS-----  220 (325)
T ss_pred             CCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCC--HHHHHHHHh---cC-C------CCCCCCCC-----
Confidence            8999999999999999999999999999999999999986532  111111111   00 0      01111111     


Q ss_pred             HHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARP-----CASDVTK  945 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RP-----t~~~v~~  945 (966)
                       .++.+++.+|++.||++||     ++.++++
T Consensus       221 -~~~~~li~~~L~~dP~~R~~~~~~~~~~il~  251 (325)
T cd05594         221 -PEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQ  251 (325)
T ss_pred             -HHHHHHHHHHhhcCHHHhCCCCCCCHHHHhc
Confidence             2455677899999999997     8888764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=1.1e-32  Score=300.71  Aligned_cols=239  Identities=21%  Similarity=0.367  Sum_probs=185.8

Q ss_pred             cccCCCCCccEEEEEEEec-----CCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLA-----NDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~-----~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ...+|+|++|.||+|....     ++..||+|++...... ..+.|.+|+..+.+ ++||||+++++++..++..++|||
T Consensus        10 ~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~lv~e   88 (280)
T cd05049          10 KRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTN-FQHENIVKFYGVCTEGDPPIMVFE   88 (280)
T ss_pred             HhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHh-cCCCCchheeeEEecCCCeEEEEe
Confidence            3457899999999998632     3478999988654333 34568888887777 699999999999999999999999


Q ss_pred             ccCCCCHHHHHHc-----------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEE
Q 002105          762 YIEGKELSEVLRN-----------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRL  824 (966)
Q Consensus       762 y~~~g~L~~~l~~-----------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~  824 (966)
                      |+++|+|.++++.                 ++|.....++.|++.|++|||   ..+++||||||+||+++.+  ..+++
T Consensus        89 ~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~i~h~dlkp~nili~~~--~~~kl  163 (280)
T cd05049          89 YMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLA---SQHFVHRDLATRNCLVGYD--LVVKI  163 (280)
T ss_pred             cCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeeccccccceEEEcCC--CeEEE
Confidence            9999999999852                 578888999999999999999   5689999999999999865  56788


Q ss_pred             eccccceec--------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhh
Q 002105          825 SVPGLAYCT--------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCY  895 (966)
Q Consensus       825 ~~~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~  895 (966)
                      +|+|.+...        .....+++.|+|||++.+..++.++|||||||++|||++ |+.||....  .+...+...   
T Consensus       164 ~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~--~~~~~~~~~---  238 (280)
T cd05049         164 GDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLS--NEEVIECIT---  238 (280)
T ss_pred             CCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHHH---
Confidence            999987532        122234678999999999999999999999999999999 999986432  122212221   


Q ss_pred             ccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          896 SDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       896 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      . .....     .....      ..++.+++.+||+.||++||++.||+++|++
T Consensus       239 ~-~~~~~-----~~~~~------~~~~~~li~~~l~~~p~~Rp~~~eil~~l~~  280 (280)
T cd05049         239 Q-GRLLQ-----RPRTC------PSEVYDIMLGCWKRDPQQRINIKDIHERLQK  280 (280)
T ss_pred             c-CCcCC-----CCCCC------CHHHHHHHHHHcCCCcccCCCHHHHHHHhhC
Confidence            1 11100     01111      1356778899999999999999999999863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=5.9e-33  Score=331.65  Aligned_cols=245  Identities=22%  Similarity=0.338  Sum_probs=187.4

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ...+|+||+|.||+|+...+|+.||+|++.....   ...+.|.+|+..+.+ ++|||||++++++.+++..|+||||++
T Consensus         7 i~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~-L~HPNIVkl~~v~~d~~~lyLVMEY~e   85 (932)
T PRK13184          7 IRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAAD-LIHPGIVPVYSICSDGDPVYYTMPYIE   85 (932)
T ss_pred             EEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHh-CCCcCcCeEEEEEeeCCEEEEEEEcCC
Confidence            4457999999999999988899999999864321   123457788887777 799999999999999999999999999


Q ss_pred             CCCHHHHHHc--------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccc
Q 002105          765 GKELSEVLRN--------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA  830 (966)
Q Consensus       765 ~g~L~~~l~~--------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~  830 (966)
                      ||+|.++++.              .++....+++.||++||+|||   +.+|+||||||+||+++.++.  +++.|||++
T Consensus        86 GGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLH---s~GIIHRDLKPeNILLd~dg~--vKLiDFGLA  160 (932)
T PRK13184         86 GYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVH---SKGVLHRDLKPDNILLGLFGE--VVILDWGAA  160 (932)
T ss_pred             CCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHH---HCCccccCCchheEEEcCCCC--EEEEecCcc
Confidence            9999998852              356677899999999999999   558999999999999987654  678899987


Q ss_pred             eecC------------------------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhh
Q 002105          831 YCTD------------------------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHES  886 (966)
Q Consensus       831 ~~~~------------------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~  886 (966)
                      ....                        ...+||+.|||||++.+..++.++|||||||++|||+||+.||...... ..
T Consensus       161 k~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~-ki  239 (932)
T PRK13184        161 IFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGR-KI  239 (932)
T ss_pred             eecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchh-hh
Confidence            5320                        1235899999999999999999999999999999999999998753211 11


Q ss_pred             HHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCC-CHHHHHHHHHHhhcc
Q 002105          887 IVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARP-CASDVTKTLESCFRI  953 (966)
Q Consensus       887 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RP-t~~~v~~~L~~~~~~  953 (966)
                      .  +.. ..        .+|......   .+....+.+++.+|++.||++|| +++++.+.|+..+..
T Consensus       240 ~--~~~-~i--------~~P~~~~p~---~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~lq~  293 (932)
T PRK13184        240 S--YRD-VI--------LSPIEVAPY---REIPPFLSQIAMKALAVDPAERYSSVQELKQDLEPHLQG  293 (932)
T ss_pred             h--hhh-hc--------cChhhcccc---ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhc
Confidence            0  000 00        111000000   01112456788899999999996 578888888885543

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=1.1e-33  Score=315.08  Aligned_cols=229  Identities=22%  Similarity=0.291  Sum_probs=178.3

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      .+|+|++|.||+|+...++..||+|.+....   ......+..|+..+.+.++|||||++++++.+.+..|+||||+++|
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~   81 (321)
T cd05603           2 VIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNGG   81 (321)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCCC
Confidence            3688999999999998899999999886432   1223345666666666689999999999999999999999999999


Q ss_pred             CHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCCC
Q 002105          767 ELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSKS  837 (966)
Q Consensus       767 ~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~~  837 (966)
                      +|..++.   .+++.....++.||++||+|||   ..+|+||||||+||+++.+.  .++++|||++...      ....
T Consensus        82 ~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~--~~kl~Dfg~~~~~~~~~~~~~~~  156 (321)
T cd05603          82 ELFFHLQRERCFLEPRARFYAAEVASAIGYLH---SLNIIYRDLKPENILLDSQG--HVVLTDFGLCKEGVEPEETTSTF  156 (321)
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCC--CEEEccCCCCccCCCCCCccccc
Confidence            9998885   3778888899999999999999   56899999999999999754  5789999986531      1224


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      .||+.|+|||++.+..++.++|||||||++|||++|+.||....  .....+.+   ... ..      .+....     
T Consensus       157 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~--~~~~~~~i---~~~-~~------~~~~~~-----  219 (321)
T cd05603         157 CGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRD--VSQMYDNI---LHK-PL------QLPGGK-----  219 (321)
T ss_pred             cCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCC--HHHHHHHH---hcC-CC------CCCCCC-----
Confidence            58899999999999899999999999999999999999987531  11111111   111 00      011111     


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCAS  941 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~  941 (966)
                       ..++.+++.+|++.+|++||++.
T Consensus       220 -~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         220 -TVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             -CHHHHHHHHHHccCCHhhcCCCC
Confidence             12466778899999999999864

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=1.4e-32  Score=300.45  Aligned_cols=239  Identities=24%  Similarity=0.397  Sum_probs=183.9

Q ss_pred             cccCCCCCccEEEEEEEe----cCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          688 LTSRGKKGVSSSYKVRSL----ANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~----~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      ...+|+||+|.||+|...    ..+..||+|++..... ....++.+|+..+.+ ++|||||++++++..++..|+||||
T Consensus        10 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~lv~e~   88 (283)
T cd05090          10 MEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAE-LHHPNIVCLLGVVTQEQPVCMLFEY   88 (283)
T ss_pred             eeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhh-CCCCCeeeEEEEEecCCceEEEEEc
Confidence            456789999999999853    3557899998864332 222457778877777 6999999999999999999999999


Q ss_pred             cCCCCHHHHHH--------------------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceE
Q 002105          763 IEGKELSEVLR--------------------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL  822 (966)
Q Consensus       763 ~~~g~L~~~l~--------------------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~  822 (966)
                      +++|+|.+++.                    .+++.+...++.|++.||+|||   ..+|+||||||+||+++++.  .+
T Consensus        89 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~nili~~~~--~~  163 (283)
T cd05090          89 LNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLS---SHFFVHKDLAARNILIGEQL--HV  163 (283)
T ss_pred             CCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hcCeehhccccceEEEcCCC--cE
Confidence            99999999984                    2678888999999999999999   55899999999999999754  46


Q ss_pred             EEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHH
Q 002105          823 RLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARY  893 (966)
Q Consensus       823 ~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~  893 (966)
                      +++|||++....        ....++..|+|||+..+..++.++|||||||++|||+| |..||.+..  ...+.+.+..
T Consensus       164 kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~--~~~~~~~~~~  241 (283)
T cd05090         164 KISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFS--NQEVIEMVRK  241 (283)
T ss_pred             EeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC--HHHHHHHHHc
Confidence            889999875421        12234567999999988889999999999999999999 998986431  1222222221


Q ss_pred             hhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          894 CYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       894 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                         ....     + .....      ..++.+++.+|++.+|++||++.+|.++|..
T Consensus       242 ---~~~~-----~-~~~~~------~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         242 ---RQLL-----P-CSEDC------PPRMYSLMTECWQEGPSRRPRFKDIHTRLRS  282 (283)
T ss_pred             ---CCcC-----C-CCCCC------CHHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence               1100     0 11111      1246667889999999999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=4.2e-33  Score=315.61  Aligned_cols=188  Identities=18%  Similarity=0.310  Sum_probs=159.2

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc---cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI---TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~---~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ....+|+|++|.||+++...++..||+|.+......   ....+..|+..+.+ ++|||||++++++.+++..|+|||||
T Consensus         5 ~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~-~~~~~iv~~~~~~~~~~~~~lv~E~~   83 (363)
T cd05628           5 SLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVE-ADSLWVVKMFYSFQDKLNLYLIMEFL   83 (363)
T ss_pred             EeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHh-CCCCCcceEEEEEecCCeEEEEEcCC
Confidence            445679999999999999888999999988643211   12335556666666 79999999999999999999999999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      ++|+|.+++.   .+++.....++.|++.||+|||   +.+|+||||||+|||++.+.  .++++|||++....      
T Consensus        84 ~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH---~~givHrDlKp~NILi~~~~--~vkL~DFGla~~~~~~~~~~  158 (363)
T cd05628          84 PGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIH---QLGFIHRDIKPDNLLLDSKG--HVKLSDFGLCTGLKKAHRTE  158 (363)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecCCCHHHeEECCCC--CEEEeeccCccccccccccc
Confidence            9999999986   3889999999999999999999   56999999999999998654  57889999864211      


Q ss_pred             -----------------------------------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCC
Q 002105          835 -----------------------------------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADA  879 (966)
Q Consensus       835 -----------------------------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~  879 (966)
                                                         ...+||+.|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~  238 (363)
T cd05628         159 FYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCS  238 (363)
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCC
Confidence                                               123689999999999999999999999999999999999999975


Q ss_pred             C
Q 002105          880 D  880 (966)
Q Consensus       880 ~  880 (966)
                      .
T Consensus       239 ~  239 (363)
T cd05628         239 E  239 (363)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=2.4e-33  Score=312.41  Aligned_cols=230  Identities=19%  Similarity=0.275  Sum_probs=179.2

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc---cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI---TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~---~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ...+|+|++|.||+|+...++..||+|.+......   ....+..|...+....+||+|+++++++.+++..|+||||++
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~   84 (323)
T cd05616           5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVMEYVN   84 (323)
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEEcCCC
Confidence            45579999999999999888899999988653221   122345566666664579999999999999999999999999


Q ss_pred             CCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CC
Q 002105          765 GKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DS  835 (966)
Q Consensus       765 ~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~  835 (966)
                      +|+|.+++.   .+++.++..++.|++.||+|||   ..+|+||||||+|||++.+.  .++++|||++...      ..
T Consensus        85 ~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~--~~kL~DfG~~~~~~~~~~~~~  159 (323)
T cd05616          85 GGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDSEG--HIKIADFGMCKENMWDGVTTK  159 (323)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCEEecCCCHHHeEECCCC--cEEEccCCCceecCCCCCccc
Confidence            999999885   4889999999999999999999   55999999999999999754  5789999987542      12


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...||+.|+|||++.+..++.++|||||||++|||+||+.||....  .....+.+.   . ..      +......+  
T Consensus       160 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~--~~~~~~~i~---~-~~------~~~p~~~s--  225 (323)
T cd05616         160 TFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED--EDELFQSIM---E-HN------VAYPKSMS--  225 (323)
T ss_pred             cCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCC--HHHHHHHHH---h-CC------CCCCCcCC--
Confidence            3468999999999999999999999999999999999999997532  111111111   1 00      00111111  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCA  940 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~  940 (966)
                          .++.+++.+|++.+|.+|++.
T Consensus       226 ----~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05616         226 ----KEAVAICKGLMTKHPGKRLGC  246 (323)
T ss_pred             ----HHHHHHHHHHcccCHHhcCCC
Confidence                245678889999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=2.5e-33  Score=312.60  Aligned_cols=232  Identities=25%  Similarity=0.324  Sum_probs=179.1

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      .+|+|++|.||+++...++..||+|.+....   ......+..|+..+.+.++|||||++++++..++..|+||||+++|
T Consensus         2 ~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~~   81 (325)
T cd05602           2 VIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGG   81 (325)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCCC
Confidence            3688999999999998888999999886432   1222345556555555579999999999999999999999999999


Q ss_pred             CHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCCC
Q 002105          767 ELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSKS  837 (966)
Q Consensus       767 ~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~~  837 (966)
                      +|.++++.   +.+.....++.||++||+|||   +.+|+||||||+||+++.+.  .+++.|||++...      ....
T Consensus        82 ~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~giiHrDlkp~Nili~~~~--~~kl~DfG~a~~~~~~~~~~~~~  156 (325)
T cd05602          82 ELFYHLQRERCFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQG--HIVLTDFGLCKENIEHNGTTSTF  156 (325)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCC--CEEEccCCCCcccccCCCCcccc
Confidence            99999863   677888889999999999999   56899999999999998654  5789999987532      1234


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      .||+.|||||++.+..++.++||||+||++|||++|+.||....  .....+..   ... ...  .++    ..+   .
T Consensus       157 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~--~~~~~~~i---~~~-~~~--~~~----~~~---~  221 (325)
T cd05602         157 CGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRN--TAEMYDNI---LNK-PLQ--LKP----NIT---N  221 (325)
T ss_pred             cCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCC--HHHHHHHH---HhC-CcC--CCC----CCC---H
Confidence            68999999999999999999999999999999999999997531  11111111   111 000  111    111   2


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVT  944 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~  944 (966)
                         ++.++..+|++.+|.+||++.+.+
T Consensus       222 ---~~~~li~~~l~~~p~~R~~~~~~~  245 (325)
T cd05602         222 ---SARHLLEGLLQKDRTKRLGAKDDF  245 (325)
T ss_pred             ---HHHHHHHHHcccCHHHCCCCCCCH
Confidence               355667799999999999987544

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=1.7e-32  Score=301.05  Aligned_cols=241  Identities=22%  Similarity=0.342  Sum_probs=184.3

Q ss_pred             ccCCCCCccEEEEEEEec-----CCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          689 TSRGKKGVSSSYKVRSLA-----NDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~-----~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      ..+|+||+|.||+|+...     ....+|+|.+..... .....+..|+..+.+ ++|||||+++++|..++..++||||
T Consensus         6 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~   84 (290)
T cd05045           6 KTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQ-VNHPHVIKLYGACSQDGPLLLIVEY   84 (290)
T ss_pred             ccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhh-CCCCCEeeEEEEEecCCCcEEEEEe
Confidence            356899999999998643     224677776653322 223457788887777 6999999999999999999999999


Q ss_pred             cCCCCHHHHHHc---------------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEc
Q 002105          763 IEGKELSEVLRN---------------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVD  815 (966)
Q Consensus       763 ~~~g~L~~~l~~---------------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~  815 (966)
                      +++|+|.++++.                           ++|.....++.|++.||+|||   ..+++||||||+||+++
T Consensus        85 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH---~~~ivH~dikp~nill~  161 (290)
T cd05045          85 AKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLA---EMKLVHRDLAARNVLVA  161 (290)
T ss_pred             cCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHH---HCCeehhhhhhheEEEc
Confidence            999999998752                           678888999999999999999   56899999999999998


Q ss_pred             CCCCceEEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhh
Q 002105          816 GKDEPHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHES  886 (966)
Q Consensus       816 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~  886 (966)
                      ++.  .++++|||++....        ....++..|+|||+..+..++.++||||||+++|||+| |+.||.+..  .+.
T Consensus       162 ~~~--~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~--~~~  237 (290)
T cd05045         162 EGR--KMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIA--PER  237 (290)
T ss_pred             CCC--cEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCC--HHH
Confidence            654  57888999875321        12234668999999988889999999999999999999 999986431  222


Q ss_pred             HHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          887 IVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       887 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      +.++.....         .+......      ..++.+++.+|++.+|++||+++|++++|++.+.
T Consensus       238 ~~~~~~~~~---------~~~~~~~~------~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~~  288 (290)
T cd05045         238 LFNLLKTGY---------RMERPENC------SEEMYNLMLTCWKQEPDKRPTFADISKELEKMMV  288 (290)
T ss_pred             HHHHHhCCC---------CCCCCCCC------CHHHHHHHHHHccCCcccCCCHHHHHHHHHHHHh
Confidence            222221100         00011111      1356678899999999999999999999999654

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=8.3e-33  Score=314.65  Aligned_cols=181  Identities=17%  Similarity=0.186  Sum_probs=155.9

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      +.....+|+|++|.||+++...+++.||+|+..      ...+.+|+..+.+ ++|||||++++++..++..++||||+.
T Consensus        94 y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il~~-l~HpnIv~~~~~~~~~~~~~lv~e~~~  166 (391)
T PHA03212         94 FSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHILRA-INHPSIIQLKGTFTYNKFTCLILPRYK  166 (391)
T ss_pred             cEEEEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHHHh-CCCCCCCCEeEEEEECCeeEEEEecCC
Confidence            455666799999999999999999999999642      2346778877777 799999999999999999999999996


Q ss_pred             CCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-------C
Q 002105          765 GKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-------D  834 (966)
Q Consensus       765 ~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-------~  834 (966)
                       ++|.+++.   .+++.+...++.||+.||+|||   +.+||||||||+||+++.+.  .++++|||++...       .
T Consensus       167 -~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~ylH---~~~IvHrDiKP~NIll~~~~--~vkL~DFG~a~~~~~~~~~~~  240 (391)
T PHA03212        167 -TDLYCYLAAKRNIAICDILAIERSVLRAIQYLH---ENRIIHRDIKAENIFINHPG--DVCLGDFGAACFPVDINANKY  240 (391)
T ss_pred             -CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHhEEEcCCC--CEEEEeCCccccccccccccc
Confidence             78988875   4889999999999999999999   55899999999999998654  4789999987531       1


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCC
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPAD  878 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~  878 (966)
                      ....||+.|+|||++.+..++.++|||||||++|||+||+.|+.
T Consensus       241 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~  284 (391)
T PHA03212        241 YGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLF  284 (391)
T ss_pred             ccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcC
Confidence            12468999999999999999999999999999999999998864

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=1.2e-32  Score=300.08  Aligned_cols=240  Identities=20%  Similarity=0.317  Sum_probs=184.5

Q ss_pred             cccCCCCCccEEEEEEEec-----CCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLA-----NDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~-----~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ...+|+|++|.||+|....     .+..||+|...... ......|..|+..+.+ ++||||+++++++.+.+..++|||
T Consensus        11 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~lv~e   89 (277)
T cd05036          11 LRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSK-FNHQNIVRLIGVSFERLPRFILLE   89 (277)
T ss_pred             eeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHh-CCCCCEeeEEEEEccCCCcEEEEe
Confidence            3456889999999999866     56788888775332 2223457888877777 699999999999999999999999


Q ss_pred             ccCCCCHHHHHH----------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC-CceEEEeccccc
Q 002105          762 YIEGKELSEVLR----------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLA  830 (966)
Q Consensus       762 y~~~g~L~~~l~----------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~-~~~~~~~~~~~~  830 (966)
                      |+++|+|.++++          .++|..+.+++.||+.|++|||   ..+++||||||+||+++.+. ...++++|||.+
T Consensus        90 ~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~  166 (277)
T cd05036          90 LMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLE---ENHFIHRDIAARNCLLTCKGPGRVAKIADFGMA  166 (277)
T ss_pred             cCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccchheEEEeccCCCcceEeccCccc
Confidence            999999999985          2789999999999999999999   55899999999999998654 345789999987


Q ss_pred             eecCC--------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCccc
Q 002105          831 YCTDS--------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLD  901 (966)
Q Consensus       831 ~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  901 (966)
                      .....        ....+..|+|||++.+..++.++|||||||++|||+| |+.||.....  +.+.+.+   ...... 
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~--~~~~~~~---~~~~~~-  240 (277)
T cd05036         167 RDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTN--QEVMEFV---TGGGRL-  240 (277)
T ss_pred             cccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHH---HcCCcC-
Confidence            54311        1123457999999998899999999999999999997 9999875321  1111111   111110 


Q ss_pred             ccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          902 TWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       902 ~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                      .     .....      ..++.+++.+|++.+|++||++.+|++.|+
T Consensus       241 ~-----~~~~~------~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~  276 (277)
T cd05036         241 D-----PPKGC------PGPVYRIMTDCWQHTPEDRPNFATILERIQ  276 (277)
T ss_pred             C-----CCCCC------CHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence            0     01111      135667888999999999999999999886

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=1.1e-32  Score=304.27  Aligned_cols=244  Identities=19%  Similarity=0.307  Sum_probs=185.8

Q ss_pred             cccCCCCCccEEEEEEEecCCcE--EEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQ--FVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~--vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ...+|+|++|.||+|+...++..  +|+|++.... ......+.+|+..+.++.+|||||++++++..++..|+||||++
T Consensus        12 ~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (303)
T cd05088          12 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAP   91 (303)
T ss_pred             eeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEEEEeCC
Confidence            34578999999999998777754  5777665432 22234577888888885489999999999999999999999999


Q ss_pred             CCCHHHHHH-------------------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEe
Q 002105          765 GKELSEVLR-------------------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS  825 (966)
Q Consensus       765 ~g~L~~~l~-------------------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~  825 (966)
                      +|+|.++++                   .+++.++..++.|++.|++|||   +.+|+||||||+||+++.+.  .++++
T Consensus        92 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~gi~H~dlkp~Nili~~~~--~~kl~  166 (303)
T cd05088          92 HGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENY--VAKIA  166 (303)
T ss_pred             CCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHH---hCCccccccchheEEecCCC--cEEeC
Confidence            999999985                   2578899999999999999999   56999999999999998654  57889


Q ss_pred             ccccceecC-----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCc
Q 002105          826 VPGLAYCTD-----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCH  899 (966)
Q Consensus       826 ~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~  899 (966)
                      |||++....     .....+..|+|||++.+..++.++|||||||++|||+| |..||.....  ....+...   ....
T Consensus       167 dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~~~---~~~~  241 (303)
T cd05088         167 DFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC--AELYEKLP---QGYR  241 (303)
T ss_pred             ccccCcccchhhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCCh--HHHHHHHh---cCCc
Confidence            999875321     11223567999999988889999999999999999998 9999864321  11111111   1100


Q ss_pred             ccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          900 LDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       900 ~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      ..      .....      ..++.+++.+|++.+|++||++.+++.+|++++..
T Consensus       242 ~~------~~~~~------~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~  283 (303)
T cd05088         242 LE------KPLNC------DDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE  283 (303)
T ss_pred             CC------CCCCC------CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            00      00011      12467788999999999999999999999885543

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=9.7e-33  Score=308.24  Aligned_cols=187  Identities=19%  Similarity=0.279  Sum_probs=149.1

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ++|.|.++++.||+++...+|..||+|++.... .....++..++..+.+.++|||||+++++|..++..++||||+++|
T Consensus         5 ~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~   84 (327)
T cd08227           5 VIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYG   84 (327)
T ss_pred             hccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccCCC
Confidence            455566688999999999999999999985432 1222234444445556579999999999999999999999999999


Q ss_pred             CHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec--------
Q 002105          767 ELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT--------  833 (966)
Q Consensus       767 ~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~--------  833 (966)
                      +|.+++.     .+++.....++.|++.||+|||   +.+|+||||||+||+++.+.  .+++.+++.....        
T Consensus        85 ~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiH~dlkp~Nil~~~~~--~~~l~~~~~~~~~~~~~~~~~  159 (327)
T cd08227          85 SAKDLICTHFMDGMSELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDG--KVYLSGLRSNLSMINHGQRLR  159 (327)
T ss_pred             cHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCChhhEEEecCC--cEEEcccchhhcccccccccc
Confidence            9999984     2789999999999999999999   55899999999999998654  3555555432110        


Q ss_pred             -----CCCCcCCcccccccccCC--CCCCCcchHHHHHHHHHHHHcCCCCCCC
Q 002105          834 -----DSKSINSSAYVAPETKES--KDITEKGDIYGFGLILIDLLTGKSPADA  879 (966)
Q Consensus       834 -----~~~~~~~~~y~aPE~~~~--~~~~~~~Dv~S~Gv~l~el~tg~~p~~~  879 (966)
                           .....++..|+|||++.+  ..++.++|||||||++|||+||+.||..
T Consensus       160 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~  212 (327)
T cd08227         160 VVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKD  212 (327)
T ss_pred             ccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence                 111245677999999875  4689999999999999999999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=1.5e-32  Score=302.07  Aligned_cols=240  Identities=18%  Similarity=0.294  Sum_probs=187.4

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .....+|.|++|.||+++...++..||+|++..........+..|+..+.+ ++||||+++++++..++..++||||+++
T Consensus        23 ~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~-~~h~~v~~~~~~~~~~~~~~lv~e~~~~  101 (296)
T cd06654          23 TRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRE-NKNPNIVNYLDSYLVGDELWVVMEYLAG  101 (296)
T ss_pred             eeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHh-CCCCCEeeEEEEEEeCCEEEEeecccCC
Confidence            344557899999999999888999999999865544444557777777666 7999999999999999999999999999


Q ss_pred             CCHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CCC
Q 002105          766 KELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SKS  837 (966)
Q Consensus       766 g~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~~  837 (966)
                      |+|.++++.  +++.+...++.|++.||+|||   ..+|+||||||+||+++.+.  .+++.|||.+....      ...
T Consensus       102 ~~L~~~~~~~~~~~~~~~~i~~ql~~aL~~LH---~~gi~H~dLkp~Nill~~~~--~~kl~dfg~~~~~~~~~~~~~~~  176 (296)
T cd06654         102 GSLTDVVTETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDG--SVKLTDFGFCAQITPEQSKRSTM  176 (296)
T ss_pred             CCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCC--CEEECccccchhccccccccCcc
Confidence            999999874  789999999999999999999   56899999999999998655  46889999765321      223


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      .+++.|+|||+..+..++.++|||||||++|||++|+.||...... .....+.    .... .....|         ..
T Consensus       177 ~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~-~~~~~~~----~~~~-~~~~~~---------~~  241 (296)
T cd06654         177 VGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL-RALYLIA----TNGT-PELQNP---------EK  241 (296)
T ss_pred             cCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHH-HhHHHHh----cCCC-CCCCCc---------cc
Confidence            6788999999998888999999999999999999999998654211 1111111    1100 000000         11


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      ....+.+++.+|++.+|++|||+.||+..
T Consensus       242 ~~~~l~~li~~~l~~~p~~Rpt~~eil~~  270 (296)
T cd06654         242 LSAIFRDFLNRCLDMDVEKRGSAKELLQH  270 (296)
T ss_pred             cCHHHHHHHHHHCcCCcccCcCHHHHhhC
Confidence            12346678889999999999999999863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=1.9e-32  Score=311.57  Aligned_cols=243  Identities=20%  Similarity=0.265  Sum_probs=184.2

Q ss_pred             cccCCCCCccEEEEEEEe-----cCCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSL-----ANDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~-----~~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ...+|+|+||.||+|+..     ..+..||+|++...... ..+.+..|+..+.++-+|||||+++|+|..++..++|||
T Consensus        42 ~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~~~iv~E  121 (401)
T cd05107          42 GRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGPIYIITE  121 (401)
T ss_pred             hhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCCcEEEEe
Confidence            346799999999999853     34468999998643222 223577888888884249999999999999999999999


Q ss_pred             ccCCCCHHHHHHc-------------------------------------------------------------------
Q 002105          762 YIEGKELSEVLRN-------------------------------------------------------------------  774 (966)
Q Consensus       762 y~~~g~L~~~l~~-------------------------------------------------------------------  774 (966)
                      |+++|+|.++++.                                                                   
T Consensus       122 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (401)
T cd05107         122 YCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMKGTVKY  201 (401)
T ss_pred             ccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcchhhhhh
Confidence            9999999999852                                                                   


Q ss_pred             ----------------------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCc
Q 002105          775 ----------------------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEP  820 (966)
Q Consensus       775 ----------------------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~  820 (966)
                                                        ++|....+++.|++.||+|||   ..+|+||||||+||+++++  .
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrdlkp~NiLl~~~--~  276 (401)
T cd05107         202 ADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLA---SKNCVHRDLAARNVLICEG--K  276 (401)
T ss_pred             hhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcCcccCCcceEEEeCC--C
Confidence                                              456677889999999999999   6699999999999999864  4


Q ss_pred             eEEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHH
Q 002105          821 HLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWA  891 (966)
Q Consensus       821 ~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~  891 (966)
                      .++++|||++....        ....+++.|||||++....++.++|||||||++|||++ |+.||..... .+...+..
T Consensus       277 ~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~-~~~~~~~~  355 (401)
T cd05107         277 LVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPM-NEQFYNAI  355 (401)
T ss_pred             EEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCc-hHHHHHHH
Confidence            57889999875321        12345678999999988889999999999999999998 8889864321 11111111


Q ss_pred             HHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 002105          892 RYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCF  951 (966)
Q Consensus       892 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~  951 (966)
                         ..+..      +......      ..++.+++.+||+.+|.+||+|+||++.|++++
T Consensus       356 ---~~~~~------~~~p~~~------~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~~  400 (401)
T cd05107         356 ---KRGYR------MAKPAHA------SDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDLL  400 (401)
T ss_pred             ---HcCCC------CCCCCCC------CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence               11110      1111111      135667888999999999999999999999843

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=2.4e-32  Score=296.34  Aligned_cols=240  Identities=18%  Similarity=0.276  Sum_probs=175.5

Q ss_pred             cCCCCCccEEEEEEEec--CCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          690 SRGKKGVSSSYKVRSLA--NDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~--~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      .+|+|++|.||+|....  .+..+|+|++...... ....|..|+..+.+ ++|||||+++|++.+....++||||+++|
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRS-LQHSNLLQCLGQCTEVTPYLLVMEFCPLG   80 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHh-CCCCCEeeEEEEEcCCCCcEEEEECCCCC
Confidence            36899999999998632  3457899987544322 22357777777766 79999999999999999999999999999


Q ss_pred             CHHHHHHc--------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          767 ELSEVLRN--------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       767 ~L~~~l~~--------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      +|.++++.        .++.....++.|++.|++|||   ..+++||||||+||+++.+  ..+++.|||.+....    
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dlkp~nil~~~~--~~~kL~dfg~~~~~~~~~~  155 (269)
T cd05087          81 DLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLH---KNNFIHSDLALRNCLLTAD--LTVKIGDYGLSHNKYKEDY  155 (269)
T ss_pred             cHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHH---HCCEeccccCcceEEEcCC--CcEEECCccccccccCcce
Confidence            99999862        456777889999999999999   5689999999999999865  457889999874321    


Q ss_pred             ----CCCcCCcccccccccCCC-------CCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccc
Q 002105          835 ----SKSINSSAYVAPETKESK-------DITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDT  902 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~-------~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  902 (966)
                          ....++..|+|||++...       .++.++|||||||++|||++ |+.||..... .+.. ...   ... ....
T Consensus       156 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~-~~~~-~~~---~~~-~~~~  229 (269)
T cd05087         156 YVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSD-EQVL-TYT---VRE-QQLK  229 (269)
T ss_pred             eecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCCh-HHHH-HHH---hhc-ccCC
Confidence                123456789999987542       35789999999999999996 9999864321 1111 111   111 1111


Q ss_pred             cccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          903 WVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       903 ~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                      ..+|.+....   .+   ++.+++..|| .+|++|||++||++.|+
T Consensus       230 ~~~~~~~~~~---~~---~~~~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         230 LPKPRLKLPL---SD---RWYEVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             CCCCccCCCC---Ch---HHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence            1223222111   12   3455667898 58999999999999875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=1.6e-32  Score=299.06  Aligned_cols=240  Identities=17%  Similarity=0.290  Sum_probs=182.3

Q ss_pred             ccccCCCCCccEEEEEEEe-----cCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSL-----ANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~-----~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      ....+|+||+|.||+|+..     ..+..||+|++..... ....+|.+|+..+.+ ++|||||++++++.+++..++||
T Consensus        10 ~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~-l~~~~iv~~~~~~~~~~~~~lv~   88 (277)
T cd05062          10 MSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE-FNCHHVVRLLGVVSQGQPTLVIM   88 (277)
T ss_pred             eeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHh-CCCCCeeeEEEEEcCCCCeEEEE
Confidence            3445789999999998753     2346799998754322 223457778776666 79999999999999999999999


Q ss_pred             EccCCCCHHHHHHc-------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecc
Q 002105          761 EYIEGKELSEVLRN-------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP  827 (966)
Q Consensus       761 Ey~~~g~L~~~l~~-------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~  827 (966)
                      ||+++|+|.++++.             ++|..+..++.|+++||+|||   ..+++||||||+||+++++.  .++++||
T Consensus        89 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~vH~dlkp~Nil~~~~~--~~~l~df  163 (277)
T cd05062          89 ELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDF--TVKIGDF  163 (277)
T ss_pred             ecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCcchheEEEcCCC--CEEECCC
Confidence            99999999999863             467888999999999999999   56899999999999999654  5788999


Q ss_pred             ccceec--------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccC
Q 002105          828 GLAYCT--------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDC  898 (966)
Q Consensus       828 ~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  898 (966)
                      |++...        .....+++.|||||++.+..++.++|||||||++|||+| |+.||....  .+...+.+.   ...
T Consensus       164 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~--~~~~~~~~~---~~~  238 (277)
T cd05062         164 GMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMS--NEQVLRFVM---EGG  238 (277)
T ss_pred             CCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCC--HHHHHHHHH---cCC
Confidence            986431        112244678999999998889999999999999999999 688886432  122212211   111


Q ss_pred             cccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          899 HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       899 ~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      .    .+  .....      ...+.+++.+|++.+|++|||+.|++++|++
T Consensus       239 ~----~~--~~~~~------~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~  277 (277)
T cd05062         239 L----LD--KPDNC------PDMLFELMRMCWQYNPKMRPSFLEIISSIKE  277 (277)
T ss_pred             c----CC--CCCCC------CHHHHHHHHHHcCCChhhCcCHHHHHHHhhC
Confidence            0    00  11111      1356778899999999999999999999864

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=9.8e-33  Score=307.68  Aligned_cols=231  Identities=19%  Similarity=0.262  Sum_probs=178.4

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .+..+|+|++|.||+|+...++..||+|.+....   ....+.+..|+..+.+.-+|++|+++++++..++..|+||||+
T Consensus         4 ~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~   83 (324)
T cd05587           4 FLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYV   83 (324)
T ss_pred             EEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEEcCC
Confidence            3456799999999999998888999999986432   2223446677777766434466899999999999999999999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------C
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------D  834 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~  834 (966)
                      ++|+|.++++   .+++..+..++.||+.||+|||   ..+|+||||||+|||++.+.  .++++|||++...      .
T Consensus        84 ~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~--~~kL~Dfg~~~~~~~~~~~~  158 (324)
T cd05587          84 NGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDAEG--HIKIADFGMCKENIFGGKTT  158 (324)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEEcCCC--CEEEeecCcceecCCCCCce
Confidence            9999999986   3789999999999999999999   56999999999999998654  5788999986532      1


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ....||+.|+|||++.+..++.++|||||||++|||+||+.||.+..  .......+.   . ..      +......+ 
T Consensus       159 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~--~~~~~~~i~---~-~~------~~~~~~~~-  225 (324)
T cd05587         159 RTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGED--EDELFQSIM---E-HN------VSYPKSLS-  225 (324)
T ss_pred             eeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC--HHHHHHHHH---c-CC------CCCCCCCC-
Confidence            22468999999999999999999999999999999999999997532  111111111   1 00      11111111 


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCA  940 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~  940 (966)
                           .++.+++.+|++.||.+||+.
T Consensus       226 -----~~~~~li~~~l~~~P~~R~~~  246 (324)
T cd05587         226 -----KEAVSICKGLLTKHPAKRLGC  246 (324)
T ss_pred             -----HHHHHHHHHHhhcCHHHcCCC
Confidence                 245677789999999999986

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=3e-33  Score=311.52  Aligned_cols=232  Identities=23%  Similarity=0.333  Sum_probs=178.0

Q ss_pred             cCCCCCccEEEEEEEe---cCCcEEEEEEEeccCc----ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          690 SRGKKGVSSSYKVRSL---ANDMQFVVKKIIDVNT----ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~---~~~~~vavk~~~~~~~----~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .+|+|+||.||+++..   .++..||+|.+.....    .....+..|+..+.+ ++|||||++++++..++..|+||||
T Consensus         3 ~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~-l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           3 VLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEA-VKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             eeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHh-CCCCchhceeeEEecCCeEEEEEeC
Confidence            4689999999999863   4678899998864321    122335567666666 7999999999999999999999999


Q ss_pred             cCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------
Q 002105          763 IEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------  833 (966)
Q Consensus       763 ~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------  833 (966)
                      +++|+|.++++.   +.+.....++.|++.||+|||   +.+|+||||||+||+++.++  .++++|||++...      
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~--~~kl~Dfg~~~~~~~~~~~  156 (323)
T cd05584          82 LSGGELFMHLEREGIFMEDTACFYLSEISLALEHLH---QQGIIYRDLKPENILLDAQG--HVKLTDFGLCKESIHEGTV  156 (323)
T ss_pred             CCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCC--CEEEeeCcCCeecccCCCc
Confidence            999999999863   678888889999999999999   56899999999999998654  5789999987532      


Q ss_pred             CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          834 DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       834 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      .....||+.|+|||++.+..++.++|||||||++|||++|+.||.....  .   +........ ...  +.+    ..+
T Consensus       157 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~--~---~~~~~~~~~-~~~--~~~----~~~  224 (323)
T cd05584         157 THTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENR--K---KTIDKILKG-KLN--LPP----YLT  224 (323)
T ss_pred             ccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCH--H---HHHHHHHcC-CCC--CCC----CCC
Confidence            1223689999999999998899999999999999999999999875321  1   111111111 100  111    111


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARP-----CASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RP-----t~~~v~~  945 (966)
                            .++.+++.+|++.+|++||     ++.++.+
T Consensus       225 ------~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~  255 (323)
T cd05584         225 ------PEARDLLKKLLKRNPSSRLGAGPGDAAEVQS  255 (323)
T ss_pred             ------HHHHHHHHHHcccCHhHcCCCCCCCHHHHhc
Confidence                  2456778899999999999     6776654

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=3.1e-33  Score=311.73  Aligned_cols=230  Identities=20%  Similarity=0.277  Sum_probs=176.6

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc---cccchHHHHHHHH--hhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI---TTSSFWPDVSQFG--KLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~---~~~~~~~e~~~~~--~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      +..+|+|++|.||+|+...++..||||++......   ..+.+..|...+.  +.++||||+++++++..++..|+||||
T Consensus         4 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv~E~   83 (324)
T cd05589           4 LAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFVMEY   83 (324)
T ss_pred             EEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEEEcC
Confidence            34578999999999999889999999998643211   1223444544332  236899999999999999999999999


Q ss_pred             cCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------C
Q 002105          763 IEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------D  834 (966)
Q Consensus       763 ~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~  834 (966)
                      +++|+|..+++  .+++.....++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||++...      .
T Consensus        84 ~~~~~L~~~~~~~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrdlkp~Nill~~~~--~~kL~Dfg~~~~~~~~~~~~  158 (324)
T cd05589          84 AAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLH---ENKIVYRDLKLDNLLLDTEG--FVKIADFGLCKEGMGFGDRT  158 (324)
T ss_pred             CCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecCCCHHHeEECCCC--cEEeCcccCCccCCCCCCcc
Confidence            99999999886  4899999999999999999999   56999999999999999754  5788999986531      1


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ....|++.|||||++.+..++.++|||||||++|||++|+.||.+..  ....   ........       +......+ 
T Consensus       159 ~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~--~~~~---~~~i~~~~-------~~~p~~~~-  225 (324)
T cd05589         159 STFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDD--EEEV---FDSIVNDE-------VRYPRFLS-  225 (324)
T ss_pred             cccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCC--HHHH---HHHHHhCC-------CCCCCCCC-
Confidence            23468999999999999999999999999999999999999987532  1111   11111110       11111111 


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCA  940 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~  940 (966)
                           .++.+++.+|++.||++||++
T Consensus       226 -----~~~~~li~~~L~~dP~~R~~~  246 (324)
T cd05589         226 -----REAISIMRRLLRRNPERRLGS  246 (324)
T ss_pred             -----HHHHHHHHHHhhcCHhHcCCC
Confidence                 245678889999999999954

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-33  Score=304.09  Aligned_cols=245  Identities=20%  Similarity=0.311  Sum_probs=192.9

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ...+|+|-||+|-.+.. ..+..||||++...... ...+|..|++.+++ ++|||||+++|+|..++.+++|+|||++|
T Consensus       543 ~ekiGeGqFGEVhLCev-eg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsq-LkhPNIveLvGVC~~DePicmI~EYmEnG  620 (807)
T KOG1094|consen  543 KEKIGEGQFGEVHLCEV-EGPLKVAVKILRPDATKNARNDFLKEIKILSR-LKHPNIVELLGVCVQDDPLCMITEYMENG  620 (807)
T ss_pred             hhhhcCcccceeEEEEe-cCceEEEEeecCcccchhHHHHHHHHHHHHhc-cCCCCeeEEEeeeecCCchHHHHHHHhcC
Confidence            34568999999999886 66799999999765433 35789999999999 59999999999999999999999999999


Q ss_pred             CHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec--------
Q 002105          767 ELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT--------  833 (966)
Q Consensus       767 ~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~--------  833 (966)
                      +|.+++..     ..-..-.+||.|||.||+||.   +..+||||+.+.|+|+|+++  .+|++|||.+...        
T Consensus       621 DLnqFl~aheapt~~t~~~vsi~tqiasgmaYLe---s~nfVHrd~a~rNcLv~~e~--~iKiadfgmsR~lysg~yy~v  695 (807)
T KOG1094|consen  621 DLNQFLSAHELPTAETAPGVSICTQIASGMAYLE---SLNFVHRDLATRNCLVDGEF--TIKIADFGMSRNLYSGDYYRV  695 (807)
T ss_pred             cHHHHHHhccCcccccchhHHHHHHHHHHHHHHH---hhchhhccccccceeecCcc--cEEecCcccccccccCCceee
Confidence            99999963     233455789999999999999   56899999999999999665  5788999987632        


Q ss_pred             CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc--CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCC
Q 002105          834 DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT--GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH  911 (966)
Q Consensus       834 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t--g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  911 (966)
                      ....+-...|||||.+.-+++|+++|||+|||++||+++  .+.||....  .+.+++-+....++..... +-      
T Consensus       696 qgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt--~e~vven~~~~~~~~~~~~-~l------  766 (807)
T KOG1094|consen  696 QGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLT--DEQVVENAGEFFRDQGRQV-VL------  766 (807)
T ss_pred             ecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhh--HHHHHHhhhhhcCCCCcce-ec------
Confidence            222334568999999999999999999999999999865  778875321  2334444444444332222 11      


Q ss_pred             CcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          912 VSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       912 ~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                       +....+..++.+++++||..|-++||+++++..-|++
T Consensus       767 -~~P~~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~  803 (807)
T KOG1094|consen  767 -SRPPACPQGLYELMLRCWRRESEQRPSFEQLHLFLQE  803 (807)
T ss_pred             -cCCCcCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHH
Confidence             1112233467789999999999999999999998876

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=1.2e-32  Score=301.09  Aligned_cols=249  Identities=22%  Similarity=0.315  Sum_probs=183.1

Q ss_pred             ccccCCCCCccEEEEEEE----ecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEec--CCeeEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRS----LANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS--EKAAYLVY  760 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~----~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~--~~~~~lv~  760 (966)
                      ....+|+|++|.||++..    ..++..||+|++........+.+..|+..+.+ ++|||||++++++..  ....++||
T Consensus         8 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~~~lv~   86 (284)
T cd05081           8 FIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKS-LQHDNIVKYKGVCYSAGRRNLRLVM   86 (284)
T ss_pred             eeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHh-CCCCCeeEEEEEEccCCCCceEEEE
Confidence            345579999999999874    34678999999865544444567888888877 699999999998754  34689999


Q ss_pred             EccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-
Q 002105          761 EYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-  835 (966)
Q Consensus       761 Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-  835 (966)
                      ||+++|+|.+++.    .++|..+..++.|++.||+|||   ..+|+||||||+||+++++.  .++++|||++..... 
T Consensus        87 e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH---~~~i~H~dlkp~nili~~~~--~~~l~dfg~~~~~~~~  161 (284)
T cd05081          87 EYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLG---SKRYVHRDLATRNILVESEN--RVKIGDFGLTKVLPQD  161 (284)
T ss_pred             EecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHhhEEECCCC--eEEECCCcccccccCC
Confidence            9999999999985    2789999999999999999999   55899999999999998654  578899998764211 


Q ss_pred             --------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccc-----
Q 002105          836 --------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDT-----  902 (966)
Q Consensus       836 --------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----  902 (966)
                              ...++..|+|||+..+..++.++|||||||++|||++|..|+.....      .+............     
T Consensus       162 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  235 (284)
T cd05081         162 KEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPA------EFMRMMGNDKQGQMIVYHL  235 (284)
T ss_pred             CcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcch------hhhhhcccccccccchHHH
Confidence                    11223469999999888899999999999999999999877542211      11100000000000     


Q ss_pred             --cccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          903 --WVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       903 --~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                        .+.....  .+.......++.+++.+||+.+|++||||.||+++|++
T Consensus       236 ~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~  282 (284)
T cd05081         236 IELLKNNGR--LPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEA  282 (284)
T ss_pred             HHHHhcCCc--CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHh
Confidence              0000000  00000112357788899999999999999999999987

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-34  Score=277.99  Aligned_cols=237  Identities=24%  Similarity=0.306  Sum_probs=179.2

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      .+|+|.|+.||++...++|+.+|+|.+.-.  ...+.++.. ++..+.+.++|||||++.+.+.++...|+|+|+|+||+
T Consensus        18 ~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~-rEarIC~~LqHP~IvrL~~ti~~~~~~ylvFe~m~G~d   96 (355)
T KOG0033|consen   18 ELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLE-REARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGE   96 (355)
T ss_pred             HHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHH-HHHHHHHhcCCCcEeehhhhhcccceeEEEEecccchH
Confidence            468999999999999999999999876321  222233333 44455566899999999999999999999999999999


Q ss_pred             HHHHH-Hc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC-CCceEEEeccccceecCC-----CCc
Q 002105          768 LSEVL-RN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK-DEPHLRLSVPGLAYCTDS-----KSI  838 (966)
Q Consensus       768 L~~~l-~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~-~~~~~~~~~~~~~~~~~~-----~~~  838 (966)
                      |..-| ++  +++...-....||.+||.|+|   ..+|||||+||.|+++.+. ..+-+|+++||++....+     ..+
T Consensus        97 l~~eIV~R~~ySEa~aSH~~rQiLeal~yCH---~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g~~~~G~~  173 (355)
T KOG0033|consen   97 LFEDIVAREFYSEADASHCIQQILEALAYCH---SNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDGEAWHGFA  173 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCceeccCChhheeeeeccCCCceeecccceEEEeCCcccccccc
Confidence            97655 33  566667788999999999999   6699999999999999754 346689999999876432     357


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      |||+|||||++...+|+..+|||+-|||||-|+.|.+||.++.  ...+.+.+..    +..+  +++.-....   .++
T Consensus       174 GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~--~~rlye~I~~----g~yd--~~~~~w~~i---s~~  242 (355)
T KOG0033|consen  174 GTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED--QHRLYEQIKA----GAYD--YPSPEWDTV---TPE  242 (355)
T ss_pred             CCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCcc--HHHHHHHHhc----cccC--CCCcccCcC---CHH
Confidence            9999999999999999999999999999999999999997632  2222222211    1111  222222222   233


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVT  944 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~  944 (966)
                      .   .+++.+.+..||++|-|+.|.+
T Consensus       243 A---k~LvrrML~~dP~kRIta~EAL  265 (355)
T KOG0033|consen  243 A---KSLIRRMLTVNPKKRITADEAL  265 (355)
T ss_pred             H---HHHHHHHhccChhhhccHHHHh
Confidence            3   3455567789999999998865

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=2.1e-32  Score=301.31  Aligned_cols=243  Identities=18%  Similarity=0.274  Sum_probs=185.5

Q ss_pred             ccCCCCCccEEEEEEEecCCc--EEEEEEEecc-CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDM--QFVVKKIIDV-NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~--~vavk~~~~~-~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ..+|+||+|.||+|....++.  .+|+|.+... .....+.|..|+..+.++.+|||||++++++...+..++||||+++
T Consensus         8 ~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~   87 (297)
T cd05089           8 DVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAIEYAPY   87 (297)
T ss_pred             eeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEEEEecCC
Confidence            356899999999999866664  4677776532 2223346788888888854899999999999999999999999999


Q ss_pred             CCHHHHHHc-------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEec
Q 002105          766 KELSEVLRN-------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSV  826 (966)
Q Consensus       766 g~L~~~l~~-------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~  826 (966)
                      |+|.++++.                   +++.....++.|++.|++|||   ..+|+||||||+||+++++.  .+++.|
T Consensus        88 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~--~~kl~d  162 (297)
T cd05089          88 GNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLS---EKQFIHRDLAARNVLVGENL--ASKIAD  162 (297)
T ss_pred             CcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCcCCcceEEECCCC--eEEECC
Confidence            999999852                   678889999999999999999   56999999999999998654  468899


Q ss_pred             cccceecC-----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcc
Q 002105          827 PGLAYCTD-----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHL  900 (966)
Q Consensus       827 ~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  900 (966)
                      ||++....     .....+..|+|||+..+..++.++|||||||++|||+| |+.||....  ....   ......+.  
T Consensus       163 fg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~--~~~~---~~~~~~~~--  235 (297)
T cd05089         163 FGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMT--CAEL---YEKLPQGY--  235 (297)
T ss_pred             cCCCccccceeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC--HHHH---HHHHhcCC--
Confidence            99874321     11122456999999998899999999999999999998 999986532  1111   11111110  


Q ss_pred             cccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          901 DTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       901 ~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                          .+......      ..++.+++.+|++.+|.+||++++|+++|+.....
T Consensus       236 ----~~~~~~~~------~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~  278 (297)
T cd05089         236 ----RMEKPRNC------DDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEA  278 (297)
T ss_pred             ----CCCCCCCC------CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence                11111111      13566788999999999999999999999985543

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=1.2e-32  Score=298.16  Aligned_cols=240  Identities=20%  Similarity=0.334  Sum_probs=185.7

Q ss_pred             cccCCCCCccEEEEEEEecC---CcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          688 LTSRGKKGVSSSYKVRSLAN---DMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~---~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ...+|+||+|.||+|+....   ...||||++.... .....+|.+|+..+.+ ++||||+++++++..++..++||||+
T Consensus         9 ~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~iv~e~~   87 (266)
T cd05033           9 EKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQ-FDHPNIIRLEGVVTKSRPVMIITEYM   87 (266)
T ss_pred             eeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHh-CCCCCcceEeEEEecCCceEEEEEcC
Confidence            34568999999999987543   4578888875432 2233467888888777 69999999999999999999999999


Q ss_pred             CCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          764 EGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       764 ~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      ++|+|.++++    .++|..+.+++.|++.|++|||   +.+|+||||||+||+++++.  .+++.|||++....     
T Consensus        88 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh---~~~i~H~di~p~nili~~~~--~~~l~dfg~~~~~~~~~~~  162 (266)
T cd05033          88 ENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLS---EMNYVHRDLAARNILVNSNL--VCKVSDFGLSRRLEDSEAT  162 (266)
T ss_pred             CCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCC--CEEECccchhhcccccccc
Confidence            9999999985    3789999999999999999999   56899999999999998654  46888998875432     


Q ss_pred             ---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          835 ---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                         ....++..|+|||+..+..++.++||||||+++|||++ |..||....  .....+....   . .    ..|.. .
T Consensus       163 ~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~--~~~~~~~~~~---~-~----~~~~~-~  231 (266)
T cd05033         163 YTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMS--NQDVIKAVED---G-Y----RLPPP-M  231 (266)
T ss_pred             eeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCC--HHHHHHHHHc---C-C----CCCCC-C
Confidence               11233567999999998899999999999999999998 999985431  1212122211   1 0    11111 1


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESC  950 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~  950 (966)
                      ..      ...+.+++.+|++.+|++||+|+||++.|++.
T Consensus       232 ~~------~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         232 DC------PSALYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             CC------CHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            11      23567888999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=1.3e-32  Score=300.32  Aligned_cols=239  Identities=21%  Similarity=0.344  Sum_probs=184.5

Q ss_pred             cccCCCCCccEEEEEEEe-----cCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          688 LTSRGKKGVSSSYKVRSL-----ANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~-----~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      ...+|+||+|.||++...     .++..+|+|++..........+..|+..+.+ ++||||+++++++..++..++||||
T Consensus        10 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~   88 (280)
T cd05092          10 KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTV-LQHQHIVRFYGVCTEGRPLLMVFEY   88 (280)
T ss_pred             ccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhc-CCCCCCceEEEEEecCCceEEEEec
Confidence            446789999999998642     3456788888765554445568888887777 6999999999999999999999999


Q ss_pred             cCCCCHHHHHHc------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEE
Q 002105          763 IEGKELSEVLRN------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRL  824 (966)
Q Consensus       763 ~~~g~L~~~l~~------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~  824 (966)
                      +++|+|.++++.                  ++|..+..++.|++.|++|||   ..+++||||||+||+++++.  .+++
T Consensus        89 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~nil~~~~~--~~kL  163 (280)
T cd05092          89 MRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLA---SLHFVHRDLATRNCLVGQGL--VVKI  163 (280)
T ss_pred             CCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHH---HCCeecccccHhhEEEcCCC--CEEE
Confidence            999999999852                  688999999999999999999   56899999999999998654  5688


Q ss_pred             eccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhh
Q 002105          825 SVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCY  895 (966)
Q Consensus       825 ~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~  895 (966)
                      .|||++....        ....+++.|+|||+..+..++.++|||||||++|||+| |+.||..... .+.. +...   
T Consensus       164 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~-~~~~-~~~~---  238 (280)
T cd05092         164 GDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSN-TEAI-ECIT---  238 (280)
T ss_pred             CCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCH-HHHH-HHHH---
Confidence            9999875321        12234678999999999999999999999999999998 8999854311 1111 1111   


Q ss_pred             ccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          896 SDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       896 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      .....      ......+      .++.+++.+||+.||++||+++||.+.|++
T Consensus       239 ~~~~~------~~~~~~~------~~~~~li~~cl~~~P~~Rp~~~~l~~~l~~  280 (280)
T cd05092         239 QGREL------ERPRTCP------PEVYAIMQGCWQREPQQRMVIKDIHSRLQA  280 (280)
T ss_pred             cCccC------CCCCCCC------HHHHHHHHHHccCChhhCCCHHHHHHHHhC
Confidence            11000      0011111      246678889999999999999999999863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=1.8e-32  Score=295.09  Aligned_cols=237  Identities=18%  Similarity=0.272  Sum_probs=181.3

Q ss_pred             cCCCCCccEEEEEEE--ecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          690 SRGKKGVSSSYKVRS--LANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~--~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .+|+|++|.||+|..  ..++..+|+|++.....  ...+++..|+..+.+ ++||||++++|++.. +..++||||+++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~-~~~~lv~e~~~~   79 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQ-LDNPYIVRMIGICEA-ESWMLVMELAEL   79 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHh-CCCCCcceEEEEEcC-CCcEEEEecCCC
Confidence            368999999999864  35678899998753321  223457778777777 699999999999864 567899999999


Q ss_pred             CCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-------
Q 002105          766 KELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-------  835 (966)
Q Consensus       766 g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-------  835 (966)
                      |+|.+++.   .+++....+++.|++.|++|||   ..+|+||||||+||+++.+  ..++++|+|.+.....       
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~nill~~~--~~~kl~Dfg~~~~~~~~~~~~~~  154 (257)
T cd05116          80 GPLNKFLQKNKHVTEKNITELVHQVSMGMKYLE---ETNFVHRDLAARNVLLVTQ--HYAKISDFGLSKALGADENYYKA  154 (257)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccchhhEEEcCC--CeEEECCCccccccCCCCCeeee
Confidence            99999985   4789999999999999999999   5689999999999999965  4578899998754211       


Q ss_pred             --CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          836 --KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       836 --~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                        ...++..|+|||......++.++|||||||++|||+| |+.||.....  ....+...   ....      +......
T Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~--~~~~~~i~---~~~~------~~~~~~~  223 (257)
T cd05116         155 KTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKG--NEVTQMIE---SGER------MECPQRC  223 (257)
T ss_pred             cCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHH---CCCC------CCCCCCC
Confidence              1123468999999988889999999999999999998 9999865321  11112221   1111      1111111


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESC  950 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~  950 (966)
                      +      .++.+++.+||+.||++||+|.+|+++|+.+
T Consensus       224 ~------~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~~  255 (257)
T cd05116         224 P------PEMYDLMKLCWTYGVDERPGFAVVELRLRNY  255 (257)
T ss_pred             C------HHHHHHHHHHhccCchhCcCHHHHHHHHhcc
Confidence            1      2466788899999999999999999999874

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=5.3e-32  Score=297.09  Aligned_cols=251  Identities=20%  Similarity=0.277  Sum_probs=177.5

Q ss_pred             cccCCCCCccEEEEEEEec-CCcEEEEEEEeccCc--ccccchHHHHHHHHhh--cCCCceeEEeeEEec-----CCeeE
Q 002105          688 LTSRGKKGVSSSYKVRSLA-NDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKL--IMHPNIVRLHGVCRS-----EKAAY  757 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~-~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~--~~H~niv~l~g~~~~-----~~~~~  757 (966)
                      ...+|+|++|.||+|+... ++..||+|++.....  .....+.+|+..+.++  ++|||||+++++|..     ....+
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~~~~   85 (290)
T cd07862           6 VAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLT   85 (290)
T ss_pred             eeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCCCcEE
Confidence            4457999999999999754 467899998754322  1223456676655542  369999999999852     45689


Q ss_pred             EEEEccCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee
Q 002105          758 LVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC  832 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~  832 (966)
                      +||||++ |+|.+++..     +++..+..++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||.+..
T Consensus        86 lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~iiH~dlkp~Nil~~~~~--~~kl~Dfg~~~~  159 (290)
T cd07862          86 LVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSG--QIKLADFGLARI  159 (290)
T ss_pred             EEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEcCCC--CEEEccccceEe
Confidence            9999997 699998853     789999999999999999999   56899999999999998654  478899998754


Q ss_pred             cC-----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhh-c-cCcc-----
Q 002105          833 TD-----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCY-S-DCHL-----  900 (966)
Q Consensus       833 ~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~-~-~~~~-----  900 (966)
                      ..     ....||+.|+|||++.+..++.++|||||||++|||++|++||.+... .+.+........ . ....     
T Consensus       160 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~  238 (290)
T cd07862         160 YSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSD-VDQLGKILDVIGLPGEEDWPRDVA  238 (290)
T ss_pred             ccCCcccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCH-HHHHHHHHHHhCCCChhhchhhhc
Confidence            22     234578999999999888999999999999999999999999975422 111111111100 0 0000     


Q ss_pred             --cccccccccCCCcch-HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          901 --DTWVDPFIRGHVSSI-QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       901 --~~~~d~~~~~~~~~~-~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                        .....+......... ......+.+++.+|++.||++|||+.|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         239 LPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             ccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence              000000000000000 001124567889999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-32  Score=302.61  Aligned_cols=240  Identities=23%  Similarity=0.331  Sum_probs=192.4

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccc---cchHHHHHHHHhhcC-CCceeEEeeEEecCCeeEEEEEccC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITT---SSFWPDVSQFGKLIM-HPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~---~~~~~e~~~~~~~~~-H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ...|.|.||.||+++...+|..+|+|.+.+......   ....+|+..+.+ +. |||||+++++|++.+..++|||+|+
T Consensus        41 ~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~-l~~hpniv~l~~~~e~~~~~~lvmEL~~  119 (382)
T KOG0032|consen   41 RELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQ-LSGHPNIVQLKDAFEDPDSVYLVMELCE  119 (382)
T ss_pred             hhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHh-ccCCCCEEEEEEEEEcCCeEEEEEEecC
Confidence            457899999999999988899999999976544332   467888888877 56 9999999999999999999999999


Q ss_pred             CCCHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC--ceEEEeccccceecC-----C
Q 002105          765 GKELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE--PHLRLSVPGLAYCTD-----S  835 (966)
Q Consensus       765 ~g~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~--~~~~~~~~~~~~~~~-----~  835 (966)
                      ||.|.+.+..  ++......++.||+.|++|||   +.+|+|||+||+|+|+.....  ..+++.|||++....     .
T Consensus       120 GGeLfd~i~~~~~sE~da~~~~~~il~av~~lH---~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~~~~~~  196 (382)
T KOG0032|consen  120 GGELFDRIVKKHYSERDAAGIIRQILEAVKYLH---SLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKPGERLH  196 (382)
T ss_pred             CchHHHHHHHccCCHHHHHHHHHHHHHHHHHHH---hCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccCCceEe
Confidence            9999998865  899999999999999999999   579999999999999987644  579999999987643     2


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ..+||+.|+|||+.....|+.++||||.||++|.|++|.+||.++.... ......+     ... .+.++.    .+..
T Consensus       197 ~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~-~~~~i~~-----~~~-~f~~~~----w~~i  265 (382)
T KOG0032|consen  197 TIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFE-IFLAILR-----GDF-DFTSEP----WDDI  265 (382)
T ss_pred             eecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhH-HHHHHHc-----CCC-CCCCCC----cccc
Confidence            3589999999999999999999999999999999999999998753221 1111111     111 101111    1111


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      .+   .+.+++..++..||.+|+|+.++++-
T Consensus       266 s~---~akd~i~~ll~~dp~~R~ta~~~L~H  293 (382)
T KOG0032|consen  266 SE---SAKDFIRKLLEFDPRKRLTAAQALQH  293 (382)
T ss_pred             CH---HHHHHHHHhcccCcccCCCHHHHhcC
Confidence            22   34456678899999999999999873

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-32  Score=299.76  Aligned_cols=239  Identities=21%  Similarity=0.231  Sum_probs=183.5

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ....+|+|++|.||+++...++..||+|++.....   .....+.+|+..+.+ ++|||||++++++..++..++||||+
T Consensus         4 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~   82 (285)
T cd05605           4 HYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEK-VNSRFVVSLAYAYETKDALCLVLTLM   82 (285)
T ss_pred             EEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHh-cCCCCEeeeeeeecCCCeEEEEEecc
Confidence            34457899999999999988899999999864321   122346678777766 69999999999999999999999999


Q ss_pred             CCCCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          764 EGKELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       764 ~~g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      ++|+|.+++.     .+++.....++.|++.||+|||   +.+|+||||||+||+++++  ..+++.|||++....    
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~--~~~~l~Dfg~~~~~~~~~~  157 (285)
T cd05605          83 NGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLH---RERIVYRDLKPENILLDDY--GHIRISDLGLAVEIPEGET  157 (285)
T ss_pred             CCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---HCCcEecCCCHHHEEECCC--CCEEEeeCCCceecCCCCc
Confidence            9999998874     3789999999999999999999   5589999999999999865  457889999876432    


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                       ....|++.|+|||++.+..++.++|||||||++|||++|+.||.+... .... +.+........      +.....  
T Consensus       158 ~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~-~~~~-~~~~~~~~~~~------~~~~~~--  227 (285)
T cd05605         158 IRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKE-KVKR-EEVERRVKEDQ------EEYSEK--  227 (285)
T ss_pred             cccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCch-hhHH-HHHHHHhhhcc------cccCcc--
Confidence             224678999999999988999999999999999999999999975321 1111 11111111100      001111  


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARP-----CASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RP-----t~~~v~~  945 (966)
                          ....+.+++.+|++.||++||     +++++..
T Consensus       228 ----~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~  260 (285)
T cd05605         228 ----FSEAARSICRQLLTKDPGFRLGCRGEGAEEVKA  260 (285)
T ss_pred             ----cCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhc
Confidence                122466788999999999999     7777743

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-33  Score=310.10  Aligned_cols=231  Identities=19%  Similarity=0.309  Sum_probs=182.0

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccc---hHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSS---FWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~---~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .+...|+|.||+|+.+..+.++..+|||.+.+..-...++   ...|.+.+.-.-+||-++.+++++++++++|.||||+
T Consensus       372 ~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~fvmey~  451 (694)
T KOG0694|consen  372 LLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLFFVMEYV  451 (694)
T ss_pred             EEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEEEEEEec
Confidence            4556799999999999999999999999997665443332   3444444333236999999999999999999999999


Q ss_pred             CCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CC
Q 002105          764 EGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DS  835 (966)
Q Consensus       764 ~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~  835 (966)
                      .|||+..+.+  .++.....-+|..|+.||.|||   ..+||+||||-+|||||.  +.++|+.|||+++..      .+
T Consensus       452 ~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH---~~~IIYRDlKLdNiLLD~--eGh~kiADFGlcKe~m~~g~~Ts  526 (694)
T KOG0694|consen  452 AGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLH---ENGIIYRDLKLDNLLLDT--EGHVKIADFGLCKEGMGQGDRTS  526 (694)
T ss_pred             CCCcEEEEEecccccHHHHHHHHHHHHHHHHHHH---hcCceeeecchhheEEcc--cCcEEecccccccccCCCCCccc
Confidence            9999666554  4888888999999999999999   559999999999999995  567899999998753      35


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      +.+|||.|||||++.+..|+..+|-|||||+||||+.|+.||.++..  +.+.+-+.   .       .|+..+...   
T Consensus       527 TfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddE--ee~FdsI~---~-------d~~~yP~~l---  591 (694)
T KOG0694|consen  527 TFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDE--EEVFDSIV---N-------DEVRYPRFL---  591 (694)
T ss_pred             cccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHh---c-------CCCCCCCcc---
Confidence            67999999999999999999999999999999999999999987532  22212111   1       122111112   


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCA  940 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~  940 (966)
                      ..   +.++++.+-+..+|++|-.+
T Consensus       592 s~---ea~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  592 SK---EAIAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             cH---HHHHHHHHHhccCcccccCC
Confidence            22   44556667788999999877

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.9e-32  Score=294.18  Aligned_cols=237  Identities=22%  Similarity=0.363  Sum_probs=185.2

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|+|++|.||+|.. .++..||+|++... ....+++.+|+..+.+ ++||||+++++++..++..++||||+++|+
T Consensus        11 ~~~lg~g~~~~v~~~~~-~~~~~v~iK~~~~~-~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   87 (261)
T cd05068          11 LRKLGAGQFGEVWEGLW-NNTTPVAVKTLKPG-TMDPKDFLAEAQIMKK-LRHPKLIQLYAVCTLEEPIYIVTELMKYGS   87 (261)
T ss_pred             EEEecccCCccEEEEEe-cCCeEEEEEeeCCC-cccHHHHHHHHHHHHH-CCCCCccceeEEEecCCCeeeeeecccCCc
Confidence            34568899999999986 56678999987543 2344568888887777 699999999999999999999999999999


Q ss_pred             HHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCC----Cc
Q 002105          768 LSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK----SI  838 (966)
Q Consensus       768 L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~----~~  838 (966)
                      |.++++     .++|.....++.+++.|++|||   ..+|+||||||+||+++++.  .++++|||.+......    ..
T Consensus        88 L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~--~~~l~dfg~~~~~~~~~~~~~~  162 (261)
T cd05068          88 LLEYLQGGAGRALKLPQLIDMAAQVASGMAYLE---AQNYIHRDLAARNVLVGENN--ICKVADFGLARVIKEDIYEARE  162 (261)
T ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCcceEEEcCCC--CEEECCcceEEEccCCcccccC
Confidence            999985     3789999999999999999999   56899999999999999754  4788999987643211    11


Q ss_pred             ---CCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          839 ---NSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       839 ---~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                         .+..|+|||+..+..++.++|||||||++|||+| |+.||.+...  ........   .....     + ...    
T Consensus       163 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~--~~~~~~~~---~~~~~-----~-~~~----  227 (261)
T cd05068         163 GAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTN--AEVLQQVD---QGYRM-----P-CPP----  227 (261)
T ss_pred             CCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH--HHHHHHHH---cCCCC-----C-CCC----
Confidence               2347999999999999999999999999999999 9999865321  11111111   11000     0 001    


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                        .....+.+++.+|++.+|++||+|.+++++|++
T Consensus       228 --~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~  260 (261)
T cd05068         228 --GCPKELYDIMLDCWKEDPDDRPTFETLQWKLED  260 (261)
T ss_pred             --cCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence              112356778899999999999999999999986

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=3.5e-32  Score=292.77  Aligned_cols=237  Identities=16%  Similarity=0.283  Sum_probs=179.6

Q ss_pred             cCCCCCccEEEEEEEe--cCCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          690 SRGKKGVSSSYKVRSL--ANDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~--~~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      .+|+|++|.||+|...  ..+..||+|.+...... ..+.|.+|+..+.+ ++|||||+++|+|.. +..++||||+++|
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~-l~h~~ii~~~~~~~~-~~~~lv~e~~~~~   79 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQ-LDNPYIVRMIGVCEA-EALMLVMEMASGG   79 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHh-cCCCCeEEEEEEEcC-CCeEEEEEeCCCC
Confidence            3689999999998764  34556888887544322 23457788887777 799999999999864 5789999999999


Q ss_pred             CHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-------
Q 002105          767 ELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-------  835 (966)
Q Consensus       767 ~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-------  835 (966)
                      +|.++++    .+++..+.+++.|++.||+|||   ..+++||||||+||+++.+.  .++++|||++.....       
T Consensus        80 ~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nil~~~~~--~~kl~dfg~~~~~~~~~~~~~~  154 (257)
T cd05115          80 PLNKFLSGKKDEITVSNVVELMHQVSMGMKYLE---GKNFVHRDLAARNVLLVNQH--YAKISDFGLSKALGADDSYYKA  154 (257)
T ss_pred             CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hcCeeecccchheEEEcCCC--cEEeccCCccccccCCccceec
Confidence            9999985    3789999999999999999999   45899999999999998654  567889998753211       


Q ss_pred             --CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          836 --KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       836 --~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                        ...+++.|+|||+.....++.++|||||||++||+++ |+.||.....  ..+...+.   ... ... .+    ...
T Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~---~~~-~~~-~~----~~~  223 (257)
T cd05115         155 RSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKG--PEVMSFIE---QGK-RLD-CP----AEC  223 (257)
T ss_pred             cCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCH--HHHHHHHH---CCC-CCC-CC----CCC
Confidence              1122467999999988889999999999999999996 9999864321  11112111   111 100 11    111


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESC  950 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~  950 (966)
                            ..++.+++.+||+.+|++||++.+|.+.|+..
T Consensus       224 ------~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         224 ------PPEMYALMKDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             ------CHHHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence                  23566788899999999999999999999873

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.1e-34  Score=306.15  Aligned_cols=237  Identities=21%  Similarity=0.326  Sum_probs=185.1

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc---ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      ..+..+|.|+||.||.|++..+...|||||+.-.....   -.+...||..+.+ ++|||+|.+.|||..+...||||||
T Consensus        29 ~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~-l~HPntieYkgCyLre~TaWLVMEY  107 (948)
T KOG0577|consen   29 SDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQ-LRHPNTIEYKGCYLREHTAWLVMEY  107 (948)
T ss_pred             HHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHh-ccCCCcccccceeeccchHHHHHHH
Confidence            34556799999999999999999999999997554433   2456788888888 6999999999999999999999999


Q ss_pred             cCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec--CCC
Q 002105          763 IEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT--DSK  836 (966)
Q Consensus       763 ~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~--~~~  836 (966)
                      |- |+-.+.+.    .+...+...|+.|...||+|||++   +.||||||+.|||+.+.  +.||++|||.+...  ...
T Consensus       108 Cl-GSAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS~---~~IHRDiKAGNILLse~--g~VKLaDFGSAsi~~PAns  181 (948)
T KOG0577|consen  108 CL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSH---NRIHRDIKAGNILLSEP--GLVKLADFGSASIMAPANS  181 (948)
T ss_pred             Hh-ccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh---hHHhhhccccceEecCC--CeeeeccccchhhcCchhc
Confidence            98 56666553    477778889999999999999954   89999999999999954  56899999988654  345


Q ss_pred             CcCCcccccccccC---CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          837 SINSSAYVAPETKE---SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       837 ~~~~~~y~aPE~~~---~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      ++|||.|||||++.   .+.|+.|+||||+||+..||+..++|.... ..+..+...+..          -.|.+.  ..
T Consensus       182 FvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnM-NAMSALYHIAQN----------esPtLq--s~  248 (948)
T KOG0577|consen  182 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM-NAMSALYHIAQN----------ESPTLQ--SN  248 (948)
T ss_pred             ccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCc-hHHHHHHHHHhc----------CCCCCC--Cc
Confidence            78999999999864   578999999999999999999999996432 112222222221          112222  12


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .+.+   .+.+++-.|+++-|.+|||..++++
T Consensus       249 eWS~---~F~~Fvd~CLqKipqeRptse~ll~  277 (948)
T KOG0577|consen  249 EWSD---YFRNFVDSCLQKIPQERPTSEELLK  277 (948)
T ss_pred             hhHH---HHHHHHHHHHhhCcccCCcHHHHhh
Confidence            2233   4455667999999999999988765

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=3e-32  Score=295.41  Aligned_cols=239  Identities=21%  Similarity=0.304  Sum_probs=183.7

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|+|++|.||+++...++..||+|.+........+.+.+|+..+.+ ++|||||+++|++..++..++||||++++
T Consensus        12 ~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   90 (268)
T cd06624          12 ERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSY-LKHRNIVQYLGSDSENGFFKIFMEQVPGG   90 (268)
T ss_pred             ceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHh-cCCCCeeeeeeeeccCCEEEEEEecCCCC
Confidence            34567889999999999878888999998866544445567888887777 79999999999999999999999999999


Q ss_pred             CHHHHHHc----C--CHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          767 ELSEVLRN----L--SWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       767 ~L~~~l~~----l--~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      +|.++++.    +  ++..+..++.||+.|++|||   ..+|+||||||+||+++.+ ...++++|||.+....      
T Consensus        91 ~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~h~dl~p~nil~~~~-~~~~~l~dfg~~~~~~~~~~~~  166 (268)
T cd06624          91 SLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLH---DNQIVHRDIKGDNVLVNTY-SGVVKISDFGTSKRLAGINPCT  166 (268)
T ss_pred             CHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCC-CCeEEEecchhheecccCCCcc
Confidence            99999863    3  77788889999999999999   5699999999999999853 2357889998765321      


Q ss_pred             CCCcCCcccccccccCCCC--CCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 SKSINSSAYVAPETKESKD--ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~--~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                      ....+++.|+|||+.....  ++.++|||||||++|||++|+.|+.........  .+......       ..|.+... 
T Consensus       167 ~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~--~~~~~~~~-------~~~~~~~~-  236 (268)
T cd06624         167 ETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAA--MFKVGMFK-------IHPEIPES-  236 (268)
T ss_pred             ccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhh--Hhhhhhhc-------cCCCCCcc-
Confidence            1235788999999986543  788999999999999999999998642111111  11111000       11111111 


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                           ...++.+++.+||+.+|++||||.|++.
T Consensus       237 -----~~~~~~~li~~~l~~~p~~Rpt~~~ll~  264 (268)
T cd06624         237 -----LSAEAKNFILRCFEPDPDKRASAHDLLQ  264 (268)
T ss_pred             -----cCHHHHHHHHHHcCCCchhCCCHHHHHh
Confidence                 1135667888999999999999999875

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-33  Score=274.96  Aligned_cols=245  Identities=22%  Similarity=0.320  Sum_probs=186.1

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCC-----eeEEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK-----AAYLVYE  761 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~-----~~~lv~E  761 (966)
                      .....|.|||+.||.+....++..+|+||+.-....+.+...+|++.-.+ ++||||+++++++..+.     ..||++.
T Consensus        25 i~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rk-f~s~~vl~l~dh~l~~~~D~~~~~yll~P  103 (302)
T KOG2345|consen   25 IQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRK-FNSPNVLRLVDHQLREEKDGKHEAYLLLP  103 (302)
T ss_pred             EeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHh-hCCcchHHHHHHHHHhhccCceeEEEEee
Confidence            34456899999999999999999999999987665555666777776666 79999999999886543     4899999


Q ss_pred             ccCCCCHHHHHHc-------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          762 YIEGKELSEVLRN-------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       762 y~~~g~L~~~l~~-------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      |...|+|.++++.       +++.+.+.|+.||++||++||+. .++..||||||+|||+.+.+.+  .+.|+|.+....
T Consensus       104 yy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~--vl~D~GS~~~a~  180 (302)
T KOG2345|consen  104 YYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLP--VLMDLGSATQAP  180 (302)
T ss_pred             hhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCce--EEEeccCccccc
Confidence            9999999999863       78889999999999999999976 6689999999999999975554  677888764321


Q ss_pred             CC---------------CcCCcccccccccCC---CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhc
Q 002105          835 SK---------------SINSSAYVAPETKES---KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYS  896 (966)
Q Consensus       835 ~~---------------~~~~~~y~aPE~~~~---~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~  896 (966)
                      -.               ..-|..|.|||.+.-   ...++++|||||||++|+|+.|..||+..++....+ ..   ...
T Consensus       181 i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSl-aL---Av~  256 (302)
T KOG2345|consen  181 IQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSL-AL---AVQ  256 (302)
T ss_pred             eEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeE-EE---eee
Confidence            11               134678999998754   456899999999999999999999997543211111 00   000


Q ss_pred             cCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          897 DCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       897 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      ......   |.    .+...+   .+.+++.+|++.||.+||++.+++..++.
T Consensus       257 n~q~s~---P~----~~~yse---~l~~lik~mlqvdP~qRP~i~~ll~~~d~  299 (302)
T KOG2345|consen  257 NAQISI---PN----SSRYSE---ALHQLIKSMLQVDPNQRPTIPELLSKLDD  299 (302)
T ss_pred             cccccc---CC----CCCccH---HHHHHHHHHhcCCcccCCCHHHHHHHHHh
Confidence            111111   10    011122   45667789999999999999999999886

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=2.5e-32  Score=296.01  Aligned_cols=240  Identities=21%  Similarity=0.316  Sum_probs=184.9

Q ss_pred             cccCCCCCccEEEEEEEecCCc---EEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          688 LTSRGKKGVSSSYKVRSLANDM---QFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~---~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ...+|+|++|.||+|+...++.   .+|+|++.... ....+++..|+..+.+ ++||||+++++++...+..|+||||+
T Consensus        10 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~   88 (268)
T cd05063          10 QKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQ-FSHHNIIRLEGVVTKFKPAMIITEYM   88 (268)
T ss_pred             eeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhc-CCCCCeeEEEEEEccCCCcEEEEEcC
Confidence            3457889999999999865554   68888875432 2223457788877776 69999999999999999999999999


Q ss_pred             CCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCC---
Q 002105          764 EGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---  836 (966)
Q Consensus       764 ~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~---  836 (966)
                      ++|+|.++++    .++|.++..++.|++.|++|||   ..+++||||||+||+++++  ..+++.|||++......   
T Consensus        89 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~dlkp~Nili~~~--~~~kl~dfg~~~~~~~~~~~  163 (268)
T cd05063          89 ENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLS---DMNYVHRDLAARNILVNSN--LECKVSDFGLSRVLEDDPEG  163 (268)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhhEEEcCC--CcEEECCCccceeccccccc
Confidence            9999999985    3789999999999999999999   5589999999999999865  45788999987543211   


Q ss_pred             ------CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCccccccccccc
Q 002105          837 ------SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       837 ------~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                            ...+..|+|||++....++.++|||||||++||++| |+.||.....  .   ++.........     .|.. 
T Consensus       164 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~--~---~~~~~i~~~~~-----~~~~-  232 (268)
T cd05063         164 TYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSN--H---EVMKAINDGFR-----LPAP-  232 (268)
T ss_pred             ceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCH--H---HHHHHHhcCCC-----CCCC-
Confidence                  112346999999988889999999999999999998 9999864321  1   11111111110     0110 


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESC  950 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~  950 (966)
                            .+...++.+++.+||+.+|++||+|.+|++.|+++
T Consensus       233 ------~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         233 ------MDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             ------CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence                  11123567889999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=5.5e-36  Score=340.22  Aligned_cols=484  Identities=29%  Similarity=0.361  Sum_probs=367.3

Q ss_pred             CEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCC-CCCCCCCCCCcEEeCC
Q 002105           62 HVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTG-PVPIGSLSRLEILDLS  140 (966)
Q Consensus        62 ~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~Ls  140 (966)
                      +++.|++..|.+-...-+....--+|+.||+|+|+++ ..|..+ ..+.+|+.|+++.|.|.. +...+++.+|++|.|.
T Consensus        22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheec
Confidence            3555666666543211122222334888999998887 677654 334788999999988874 3335778889999999


Q ss_pred             CCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCC
Q 002105          141 NNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEI  220 (966)
Q Consensus       141 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  220 (966)
                      .|.+. ..|..+..+.+|++|++++|.+. .+|..+..++.++.+..++|.....+    +... ++.+++..|.+.+.+
T Consensus       100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~l----g~~~-ik~~~l~~n~l~~~~  172 (1081)
T KOG0618|consen  100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRL----GQTS-IKKLDLRLNVLGGSF  172 (1081)
T ss_pred             cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhh----cccc-chhhhhhhhhcccch
Confidence            98887 68888999999999999999875 78888888888888888888333222    2222 778888888888888


Q ss_pred             CcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCC
Q 002105          221 PKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQ  300 (966)
Q Consensus       221 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  300 (966)
                      +..+..++.  .|||.+|.+. .  ..+.++.+|+.|+...|++....    -.-++|+.|+.++|.++...+  -..-.
T Consensus       173 ~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~  241 (1081)
T KOG0618|consen  173 LIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDV--HPVPL  241 (1081)
T ss_pred             hcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecc--ccccc
Confidence            888887776  7899999876 2  34667788888888888876321    224678888888888873322  12235


Q ss_pred             CCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEcc
Q 002105          301 NLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILF  380 (966)
Q Consensus       301 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~  380 (966)
                      +|++++++.|++++ +|+|++.+.+|+.++..+|+++ .+|..+....+|+.|++..|.+. -+|.......+|..|+|.
T Consensus       242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             cceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence            78889999998885 5688888999999999998885 67778888888888888888887 466667778888999999


Q ss_pred             CCCCCCCCCCccccCcc-CceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCcc
Q 002105          381 SNSLEGKIPNSLSTCKS-LRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGK  459 (966)
Q Consensus       381 ~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  459 (966)
                      .|++....+..+..... |+.|+.+.|++.......=..++.|+.|.+.+|+++..+-..+-++..|+.|+|++|++.. 
T Consensus       319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-  397 (1081)
T KOG0618|consen  319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-  397 (1081)
T ss_pred             hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-
Confidence            99887655545554443 7888888888876554333456788899999999998877778888999999999999874 


Q ss_pred             CCC--CcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceecccc-CccCC
Q 002105          460 LPD--SFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHI-PASLS  536 (966)
Q Consensus       460 ~p~--~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~  536 (966)
                      +|+  ...+..|+.|+||+|+++ .+|.++..+..|++|...+|++. ..| ++..++.|+.+|+|.|+|+... |....
T Consensus       398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p  474 (1081)
T KOG0618|consen  398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP  474 (1081)
T ss_pred             CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence            455  346788999999999998 67899999999999999999997 566 8999999999999999998543 33332


Q ss_pred             CCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCC
Q 002105          537 EMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHN  573 (966)
Q Consensus       537 ~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N  573 (966)
                       -++|+.|||++|.=....-..|..+..+..+++.-|
T Consensus       475 -~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  475 -SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             -CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence             289999999999844455566777777777777766

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.7e-32  Score=293.54  Aligned_cols=235  Identities=21%  Similarity=0.358  Sum_probs=182.2

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|+|++|.||++.. .++..+|+|.+... .....+|.+|+..+.+ ++||||+++++++...+..++||||+++++
T Consensus         9 ~~~lg~G~~~~v~~~~~-~~~~~~~iK~~~~~-~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   85 (256)
T cd05059           9 LKELGSGQFGVVHLGKW-RGKIDVAIKMIREG-AMSEDDFIEEAKVMMK-LSHPNLVQLYGVCTKQRPIFIVTEYMANGC   85 (256)
T ss_pred             hhhhccCCCceEEEeEe-cCCccEEEEEeccC-CCCHHHHHHHHHHHHh-CCCCCEEEEEEEEcCCCceEEEEecCCCCC
Confidence            34568899999999987 46678999987533 2334567888887777 699999999999999999999999999999


Q ss_pred             HHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-------C
Q 002105          768 LSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-------K  836 (966)
Q Consensus       768 L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-------~  836 (966)
                      |.++++.    ++|.....++.|++.|++|||   ..+++||||||+||+++.+.  .++++|||.+.....       .
T Consensus        86 L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~ni~i~~~~--~~kl~dfg~~~~~~~~~~~~~~~  160 (256)
T cd05059          86 LLNYLRERKGKLGTEWLLDMCSDVCEAMEYLE---SNGFIHRDLAARNCLVGEDN--VVKVSDFGLARYVLDDQYTSSQG  160 (256)
T ss_pred             HHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCcccccccHhhEEECCCC--cEEECCcccceecccccccccCC
Confidence            9999863    789999999999999999999   55899999999999999654  478899997754211       1


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ..++..|+|||+..+..++.++|||||||++||++| |+.||+... ..+ ..+...   ..      ..+......   
T Consensus       161 ~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~-~~~-~~~~~~---~~------~~~~~~~~~---  226 (256)
T cd05059         161 TKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFS-NSE-VVESVS---AG------YRLYRPKLA---  226 (256)
T ss_pred             CCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCC-HHH-HHHHHH---cC------CcCCCCCCC---
Confidence            122347999999999999999999999999999999 788886431 111 111111   11      011111111   


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTKTL  947 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L  947 (966)
                         ..++.+++.+||+.+|++||||.||++.|
T Consensus       227 ---~~~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         227 ---PTEVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             ---CHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence               23577888999999999999999999886

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=3.3e-32  Score=296.86  Aligned_cols=245  Identities=18%  Similarity=0.294  Sum_probs=186.7

Q ss_pred             cccccCCCCCccEEEEEEEecCCcE----EEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQ----FVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~----vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      .....+|.|++|.||+|+...+|..    ||+|.+..... ...+++..|+..+.+ +.||||++++|+|... ..+++|
T Consensus        10 ~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~-~~~~~i~~~~~~~~~~-~~~l~~   87 (279)
T cd05109          10 KKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAG-VGSPYVCRLLGICLTS-TVQLVT   87 (279)
T ss_pred             eeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHh-cCCCCCceEEEEEcCC-CcEEEE
Confidence            4456679999999999998777764    78888754322 223456677776666 7999999999999764 578999


Q ss_pred             EccCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-
Q 002105          761 EYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-  835 (966)
Q Consensus       761 Ey~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-  835 (966)
                      ||+++|+|.++++.    +++.....++.|++.||+|||   +.+|+||||||+||+++++.  .++++|||++..... 
T Consensus        88 ~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~iiH~dlkp~Nil~~~~~--~~kL~dfG~~~~~~~~  162 (279)
T cd05109          88 QLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLE---EVRLVHRDLAARNVLVKSPN--HVKITDFGLARLLDID  162 (279)
T ss_pred             EcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccccceEEEcCCC--cEEECCCCceeecccc
Confidence            99999999999863    789999999999999999999   56899999999999998654  478999998764321 


Q ss_pred             -------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCccccccccc
Q 002105          836 -------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF  907 (966)
Q Consensus       836 -------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  907 (966)
                             ...+++.|+|||+..+..++.++|||||||++|||+| |+.||+...  ...+..+...   ....     + 
T Consensus       163 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~--~~~~~~~~~~---~~~~-----~-  231 (279)
T cd05109         163 ETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIP--AREIPDLLEK---GERL-----P-  231 (279)
T ss_pred             cceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCC--HHHHHHHHHC---CCcC-----C-
Confidence                   1223567999999998899999999999999999998 899986431  2222222221   0000     0 


Q ss_pred             ccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 002105          908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS  954 (966)
Q Consensus       908 ~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~  954 (966)
                      ....      ...++.+++..||+.||++||++.|+++.|+++.+.+
T Consensus       232 ~~~~------~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~~  272 (279)
T cd05109         232 QPPI------CTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMARDP  272 (279)
T ss_pred             CCcc------CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcCC
Confidence            0011      1235667888999999999999999999999855544

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1.5e-32  Score=329.27  Aligned_cols=243  Identities=19%  Similarity=0.237  Sum_probs=184.4

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEec--CCeeEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS--EKAAYLVY  760 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~--~~~~~lv~  760 (966)
                      +..+..+|.|+||.||++.....+..||+|.+....  ......|..|+..+.+ ++|||||+++++|..  .+.+||||
T Consensus        15 YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~-L~HPNIVrl~d~f~de~~~~lyIVM   93 (1021)
T PTZ00266         15 YEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRE-LKHKNIVRYIDRFLNKANQKLYILM   93 (1021)
T ss_pred             EEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHH-cCCCCcCeEEEEEEecCCCEEEEEE
Confidence            344556799999999999998888889998875432  2223457888888777 799999999998854  45789999


Q ss_pred             EccCCCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcC----CCCeEeecCCCCcEEEcCC------------
Q 002105          761 EYIEGKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHC----SPSVVAGDVSPGKVIVDGK------------  817 (966)
Q Consensus       761 Ey~~~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~----~~~iiHrDlk~~Nill~~~------------  817 (966)
                      ||+++|+|.++|.       .+++...+.|+.||+.||+|||...    ..+||||||||+|||++.+            
T Consensus        94 EY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~  173 (1021)
T PTZ00266         94 EFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQAN  173 (1021)
T ss_pred             eCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCcccccccccccc
Confidence            9999999999985       3889999999999999999999642    2469999999999999752            


Q ss_pred             ---CCceEEEeccccceecC-----CCCcCCcccccccccCC--CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhH
Q 002105          818 ---DEPHLRLSVPGLAYCTD-----SKSINSSAYVAPETKES--KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESI  887 (966)
Q Consensus       818 ---~~~~~~~~~~~~~~~~~-----~~~~~~~~y~aPE~~~~--~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~  887 (966)
                         ....++++|||++....     ....||+.|+|||++.+  ..++.++|||||||++|||+||+.||..... ..  
T Consensus       174 n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~-~~--  250 (1021)
T PTZ00266        174 NLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANN-FS--  250 (1021)
T ss_pred             ccCCCCceEEccCCccccccccccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCc-HH--
Confidence               23457899999876432     23468999999998854  4589999999999999999999999964321 11  


Q ss_pred             HHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          888 VEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       888 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       ..........      +..+. ..      ..++.+++..||+.+|.+||++.|++.
T Consensus       251 -qli~~lk~~p------~lpi~-~~------S~eL~dLI~~~L~~dPeeRPSa~QlL~  294 (1021)
T PTZ00266        251 -QLISELKRGP------DLPIK-GK------SKELNILIKNLLNLSAKERPSALQCLG  294 (1021)
T ss_pred             -HHHHHHhcCC------CCCcC-CC------CHHHHHHHHHHhcCChhHCcCHHHHhc
Confidence             1111111110      00011 11      135667888999999999999999983

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=1.7e-32  Score=305.98  Aligned_cols=235  Identities=21%  Similarity=0.298  Sum_probs=180.0

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      .+|+|++|.||+|+...++..||+|.+.....   ...+.+..|+..+.+..+||||+++++++...+..|+||||+++|
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~   81 (327)
T cd05617           2 VIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNGG   81 (327)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCCC
Confidence            36889999999999988999999999865322   122345677777777557999999999999999999999999999


Q ss_pred             CHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCCC
Q 002105          767 ELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSKS  837 (966)
Q Consensus       767 ~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~~  837 (966)
                      +|.+++.   .+++..+..++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||++...      ....
T Consensus        82 ~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nili~~~~--~~kl~Dfg~~~~~~~~~~~~~~~  156 (327)
T cd05617          82 DLMFHMQRQRKLPEEHARFYAAEICIALNFLH---ERGIIYRDLKLDNVLLDADG--HIKLTDYGMCKEGLGPGDTTSTF  156 (327)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEeCCC--CEEEeccccceeccCCCCceecc
Confidence            9998885   4899999999999999999999   56999999999999998654  4788999987531      1234


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCch-hhHHHHHHHhhccCcccccccccccCCCcchH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVH-ESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ  916 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  916 (966)
                      .||+.|+|||++.+..++.++|||||||++|||+||+.||....... ....++..........      .+....+   
T Consensus       157 ~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~------~~p~~~~---  227 (327)
T cd05617         157 CGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPI------RIPRFLS---  227 (327)
T ss_pred             cCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhCCC------CCCCCCC---
Confidence            68999999999999999999999999999999999999996422110 0011111111111110      0111111   


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHH
Q 002105          917 NEIVEIMNLALHCTAGDPTARPCAS  941 (966)
Q Consensus       917 ~~~~~~~~l~~~C~~~~P~~RPt~~  941 (966)
                         .++.+++.+|++.||++||++.
T Consensus       228 ---~~~~~li~~~L~~dP~~R~~~~  249 (327)
T cd05617         228 ---VKASHVLKGFLNKDPKERLGCQ  249 (327)
T ss_pred             ---HHHHHHHHHHhccCHHHcCCCC
Confidence               2456677899999999999853

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=4.1e-32  Score=293.19  Aligned_cols=238  Identities=20%  Similarity=0.338  Sum_probs=178.0

Q ss_pred             CCCCCccEEEEEEEec---CCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEe-cCCeeEEEEEccCC
Q 002105          691 RGKKGVSSSYKVRSLA---NDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCR-SEKAAYLVYEYIEG  765 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~---~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~-~~~~~~lv~Ey~~~  765 (966)
                      +|+|++|.||+|....   ....+|+|++..... ...+.+..|+..+.+ ++|||||+++++|. .++..++||||+++
T Consensus         3 lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~~lv~e~~~~   81 (262)
T cd05058           3 IGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKD-FSHPNVLSLLGICLPSEGSPLVVLPYMKH   81 (262)
T ss_pred             ccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHcc-CCCCCcceEEEEeecCCCCcEEEEecCCC
Confidence            5889999999998643   235788898754322 223456677776666 79999999999876 45668999999999


Q ss_pred             CCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-------
Q 002105          766 KELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------  834 (966)
Q Consensus       766 g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-------  834 (966)
                      |+|.++++.    .++.....++.|+++|++|||   ..+++||||||+||+++++.  .++++|||.+....       
T Consensus        82 ~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk~~nili~~~~--~~kl~dfg~~~~~~~~~~~~~  156 (262)
T cd05058          82 GDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLA---SKKFVHRDLAARNCMLDESF--TVKVADFGLARDIYDKEYYSV  156 (262)
T ss_pred             CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccCcceEEEcCCC--cEEECCccccccccCCcceee
Confidence            999999863    578888999999999999999   56899999999999998654  47889999875321       


Q ss_pred             ---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcC-CCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          835 ---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTG-KSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                         ....++..|+|||+..+..++.++|||||||++|||+|| .+|+... ...    +..........      +....
T Consensus       157 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~-~~~----~~~~~~~~~~~------~~~~~  225 (262)
T cd05058         157 HNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV-DSF----DITVYLLQGRR------LLQPE  225 (262)
T ss_pred             cccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCC-CHH----HHHHHHhcCCC------CCCCC
Confidence               122346689999999888999999999999999999995 4555432 111    12221111111      00011


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCF  951 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~  951 (966)
                      ..      ...+.+++..||+.+|++||++.||+++|++.+
T Consensus       226 ~~------~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~  260 (262)
T cd05058         226 YC------PDPLYEVMLSCWHPKPEMRPTFSELVSRIEQIF  260 (262)
T ss_pred             cC------CHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHh
Confidence            11      125667889999999999999999999999844

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=2.8e-32  Score=306.37  Aligned_cols=245  Identities=20%  Similarity=0.287  Sum_probs=184.2

Q ss_pred             ccccCCCCCccEEEEEEE-----ecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecC-CeeEEE
Q 002105          687 NLTSRGKKGVSSSYKVRS-----LANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE-KAAYLV  759 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~-----~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~-~~~~lv  759 (966)
                      ....+|+|+||.||+|..     ..+++.||||++..... .....+..|+..+.++-+|||||+++++|... ...++|
T Consensus        11 ~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv   90 (343)
T cd05103          11 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVI   90 (343)
T ss_pred             ccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCceEEE
Confidence            345679999999999974     34577899998854322 22345778888888854789999999988654 567999


Q ss_pred             EEccCCCCHHHHHHc-----------------------------------------------------------------
Q 002105          760 YEYIEGKELSEVLRN-----------------------------------------------------------------  774 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~-----------------------------------------------------------------  774 (966)
                      |||+++|+|.++++.                                                                 
T Consensus        91 ~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (343)
T cd05103          91 VEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAEQED  170 (343)
T ss_pred             EeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhhhhhh
Confidence            999999999998852                                                                 


Q ss_pred             -----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--------CCCcCCc
Q 002105          775 -----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--------SKSINSS  841 (966)
Q Consensus       775 -----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  841 (966)
                           ++|..+.+++.||++||+|||   +.+|+||||||+||+++.+.  .++++|||++....        ....+++
T Consensus       171 ~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dikp~Nil~~~~~--~~kl~dfg~~~~~~~~~~~~~~~~~~~~~  245 (343)
T cd05103         171 LYKKVLTLEDLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSENN--VVKICDFGLARDIYKDPDYVRKGDARLPL  245 (343)
T ss_pred             hhhccCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCccCeEEEcCCC--cEEEEecccccccccCcchhhcCCCCCCc
Confidence                 567788899999999999999   56999999999999998654  57889999875421        1123456


Q ss_pred             ccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHH
Q 002105          842 AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIV  920 (966)
Q Consensus       842 ~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  920 (966)
                      .|+|||+..+..++.++|||||||++|||++ |..|+...... .....   ........      ......      ..
T Consensus       246 ~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~-~~~~~---~~~~~~~~------~~~~~~------~~  309 (343)
T cd05103         246 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-EEFCR---RLKEGTRM------RAPDYT------TP  309 (343)
T ss_pred             ceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCcccc-HHHHH---HHhccCCC------CCCCCC------CH
Confidence            7999999988899999999999999999997 89998643211 11111   11111110      001111      12


Q ss_pred             HHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          921 EIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       921 ~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      ++.+++..||+.+|++|||+.||++.|+.+++
T Consensus       310 ~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~  341 (343)
T cd05103         310 EMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  341 (343)
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            46778899999999999999999999998654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=3.5e-32  Score=297.36  Aligned_cols=239  Identities=23%  Similarity=0.340  Sum_probs=181.7

Q ss_pred             cccCCCCCccEEEEEEEec-----CCcEEEEEEEeccCccc-ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLA-----NDMQFVVKKIIDVNTIT-TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~-----~~~~vavk~~~~~~~~~-~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ...+|+|++|.||+|....     .+..||+|++....... .+.+..|+..+.+ ++|||||++++++.+.+..++++|
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~-l~h~~iv~~~~~~~~~~~~~~~~e   88 (283)
T cd05091          10 MEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSR-LQHPNIVCLLGVVTKEQPLSMIFS   88 (283)
T ss_pred             HHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhc-CCCCCcCeEEEEEcCCCceEEEEE
Confidence            3456899999999998743     24689999886433221 2345666665555 799999999999999999999999


Q ss_pred             ccCCCCHHHHHH-------------------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceE
Q 002105          762 YIEGKELSEVLR-------------------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL  822 (966)
Q Consensus       762 y~~~g~L~~~l~-------------------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~  822 (966)
                      |+++++|.+++.                   .+++..+.+++.|++.||+|+|   +.+|+||||||+||+++++.  .+
T Consensus        89 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH---~~gi~H~dlkp~Nil~~~~~--~~  163 (283)
T cd05091          89 YCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLS---SHHVVHKDLATRNVLVFDKL--NV  163 (283)
T ss_pred             cCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---HcCccccccchhheEecCCC--ce
Confidence            999999999984                   2678888999999999999999   55899999999999998654  47


Q ss_pred             EEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHH
Q 002105          823 RLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARY  893 (966)
Q Consensus       823 ~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~  893 (966)
                      +++|||++....        ....+++.|+|||++.+..++.++|||||||++|||+| |..|+.+..  ...+.+... 
T Consensus       164 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~--~~~~~~~i~-  240 (283)
T cd05091         164 KISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS--NQDVIEMIR-  240 (283)
T ss_pred             EecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCC--HHHHHHHHH-
Confidence            889999865321        12234678999999988889999999999999999998 888876432  111112211 


Q ss_pred             hhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          894 CYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       894 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                        ... .    .+ .....      ...+.+++..||+.+|++||+|+||+.+|+.
T Consensus       241 --~~~-~----~~-~~~~~------~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~  282 (283)
T cd05091         241 --NRQ-V----LP-CPDDC------PAWVYTLMLECWNEFPSRRPRFKDIHSRLRT  282 (283)
T ss_pred             --cCC-c----CC-CCCCC------CHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence              111 0    01 11112      2346678899999999999999999999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=1.9e-32  Score=294.55  Aligned_cols=234  Identities=22%  Similarity=0.317  Sum_probs=185.2

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ..+|+|++|.||++....++..||+|++...  ......++..|+..+.+ ++||||+++++++.+++..|+||||++++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (256)
T cd08529           6 NKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAK-LDSSYIIRYYESFLDKGKLNIVMEYAENG   84 (256)
T ss_pred             EEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHh-cCCCCeehheeeeccCCEEEEEEEeCCCC
Confidence            4568889999999999889999999988532  23344567788887777 69999999999999999999999999999


Q ss_pred             CHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------C
Q 002105          767 ELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------S  835 (966)
Q Consensus       767 ~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~  835 (966)
                      +|.++++.     +++....+++.+++.||+|||   ..+++||||||+||+++.+.  .+++.|||.+....      .
T Consensus        85 ~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH---~~~i~h~dl~~~nili~~~~--~~~l~df~~~~~~~~~~~~~~  159 (256)
T cd08529          85 DLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLH---SKKILHRDIKSLNLFLDAYD--NVKIGDLGVAKLLSDNTNFAN  159 (256)
T ss_pred             cHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEeCCC--CEEEcccccceeccCccchhh
Confidence            99999853     678889999999999999999   56999999999999999654  46888888765422      1


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...+++.|+|||+..+..++.++|||||||++|||+||+.||....  ........   ... .    ..+ +..     
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~~~---~~~-~----~~~-~~~-----  223 (256)
T cd08529         160 TIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANN--QGALILKI---IRG-V----FPP-VSQ-----  223 (256)
T ss_pred             ccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCC--HHHHHHHH---HcC-C----CCC-Ccc-----
Confidence            2357889999999999999999999999999999999999986542  11111111   111 0    111 111     


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       ....++.+++.+||+.+|++||+|.++++
T Consensus       224 -~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~  252 (256)
T cd08529         224 -MYSQQLAQLIDQCLTKDYRQRPDTFQLLR  252 (256)
T ss_pred             -ccCHHHHHHHHHHccCCcccCcCHHHHhh
Confidence             11235677888999999999999999876

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=8.9e-32  Score=291.32  Aligned_cols=242  Identities=20%  Similarity=0.309  Sum_probs=188.7

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ...+|.|++|.||+|....+|..||+|.+.....   ...+.+.+|++.+.+ ++|+||+++++++..++..++||||++
T Consensus         7 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~-~~~~~i~~~~~~~~~~~~~~lv~e~~~   85 (267)
T cd08224           7 EKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQ-LDHPNVIKYLASFIENNELNIVLELAD   85 (267)
T ss_pred             eeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHh-CCCCCeeeeeeeeecCCeEEEEEecCC
Confidence            3456889999999999987999999998853221   223457788887777 699999999999999999999999999


Q ss_pred             CCCHHHHHHc-------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---
Q 002105          765 GKELSEVLRN-------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       765 ~g~L~~~l~~-------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---  834 (966)
                      +|+|.+++..       +++.++..++.++++|++|||   ..+|+||||||+||+++.+.  .+++.++|.+....   
T Consensus        86 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~nil~~~~~--~~~l~d~~~~~~~~~~~  160 (267)
T cd08224          86 AGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMH---SKRIMHRDIKPANVFITATG--VVKLGDLGLGRFFSSKT  160 (267)
T ss_pred             CCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHH---hCCEecCCcChhhEEECCCC--cEEEeccceeeeccCCC
Confidence            9999998852       688999999999999999999   56999999999999998654  46788888765322   


Q ss_pred             ---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCC
Q 002105          835 ---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH  911 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  911 (966)
                         ....+++.|+|||+..+..++.++|||||||++|||++|+.|+........   +....... ..    ..|...  
T Consensus       161 ~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~---~~~~~~~~-~~----~~~~~~--  230 (267)
T cd08224         161 TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLY---SLCKKIEK-CD----YPPLPA--  230 (267)
T ss_pred             cccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccHH---HHHhhhhc-CC----CCCCCh--
Confidence               123578889999999988899999999999999999999999864321111   11111110 00    111100  


Q ss_pred             CcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          912 VSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       912 ~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                          .....++.+++.+||+.+|++|||+.+|+++|++
T Consensus       231 ----~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~  264 (267)
T cd08224         231 ----DHYSEELRDLVSRCINPDPEKRPDISYVLQVAKE  264 (267)
T ss_pred             ----hhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHH
Confidence                1122356678889999999999999999999987

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=4e-32  Score=299.63  Aligned_cols=241  Identities=19%  Similarity=0.275  Sum_probs=185.0

Q ss_pred             cccCCCCCccEEEEEEEe-----cCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSL-----ANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~-----~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ...+|+|++|.||++...     ..+..||||++..... ...+.+..|+..+.++.+|||||+++++|...+..|+|||
T Consensus        40 ~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e  119 (302)
T cd05055          40 GKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPILVITE  119 (302)
T ss_pred             cceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCceEEEEE
Confidence            445688999999999752     3455789998764322 2234577888887774379999999999999999999999


Q ss_pred             ccCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-
Q 002105          762 YIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-  835 (966)
Q Consensus       762 y~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-  835 (966)
                      |+++|+|.++++.     ++|.+...++.+++.||+|||   +.+|+||||||+||+++.+  ..++++|+|.+..... 
T Consensus       120 ~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~--~~~~l~dfg~~~~~~~~  194 (302)
T cd05055         120 YCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNVLLTHG--KIVKICDFGLARDIMND  194 (302)
T ss_pred             cCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeehhhhccceEEEcCC--CeEEECCCcccccccCC
Confidence            9999999999963     789999999999999999999   5689999999999999854  4578899998753211 


Q ss_pred             -------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCccccccccc
Q 002105          836 -------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF  907 (966)
Q Consensus       836 -------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  907 (966)
                             ...++..|+|||+..+..++.++|||||||++|||+| |+.||..... .+...+....   ...      +.
T Consensus       195 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~-~~~~~~~~~~---~~~------~~  264 (302)
T cd05055         195 SNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPV-DSKFYKLIKE---GYR------MA  264 (302)
T ss_pred             CceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCc-hHHHHHHHHc---CCc------CC
Confidence                   1234567999999998899999999999999999998 9999865322 1111122111   100      00


Q ss_pred             ccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       908 ~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      .....      ..++.+++.+|++.+|++|||+.||++.|++
T Consensus       265 ~~~~~------~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~  300 (302)
T cd05055         265 QPEHA------PAEIYDIMKTCWDADPLKRPTFKQIVQLIGK  300 (302)
T ss_pred             CCCCC------CHHHHHHHHHHcCCCchhCcCHHHHHHHHHh
Confidence            00111      1356778899999999999999999999987

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.3e-32  Score=293.54  Aligned_cols=237  Identities=19%  Similarity=0.315  Sum_probs=181.9

Q ss_pred             cCCCCCccEEEEEEEecCC---cEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCe------eEE
Q 002105          690 SRGKKGVSSSYKVRSLAND---MQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKA------AYL  758 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~---~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~------~~l  758 (966)
                      .+|+|++|.||+|....++   ..||+|++.....  .....+..|+..+.+ ++||||+++++++...+.      .++
T Consensus         6 ~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~~~~~~~~   84 (273)
T cd05035           6 ILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKD-FDHPNVMKLIGVCFEASSLQKIPKPMV   84 (273)
T ss_pred             ccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHh-CCCCCeeeEEeeeccCCccccCcccEE
Confidence            4689999999999875544   6799998864321  223457788887777 699999999999876554      799


Q ss_pred             EEEccCCCCHHHHHH---------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccc
Q 002105          759 VYEYIEGKELSEVLR---------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL  829 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~---------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~  829 (966)
                      ||||+++|+|.+++.         .+++.....++.|++.||+|||   ..+++||||||+||+++++  ..++++|||.
T Consensus        85 v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH---~~~i~H~dlkp~Nil~~~~--~~~kl~dfg~  159 (273)
T cd05035          85 ILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLS---NRNFIHRDLAARNCMLRED--MTVCVADFGL  159 (273)
T ss_pred             EEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchheEEECCC--CeEEECCccc
Confidence            999999999999883         3788899999999999999999   5589999999999999865  4578999998


Q ss_pred             ceecCC--------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcc
Q 002105          830 AYCTDS--------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHL  900 (966)
Q Consensus       830 ~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  900 (966)
                      +.....        ...++..|+|||+..+..++.++|||||||++|||++ |..||....  .....++..   .+.. 
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~--~~~~~~~~~---~~~~-  233 (273)
T cd05035         160 SKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVE--NHEIYDYLR---HGNR-  233 (273)
T ss_pred             eeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHH---cCCC-
Confidence            764321        1224567999999988899999999999999999999 888886432  111212221   1111 


Q ss_pred             cccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          901 DTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       901 ~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                           +.....      ...++.+++.+|++.||++|||+.||++.|++
T Consensus       234 -----~~~~~~------~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~  271 (273)
T cd05035         234 -----LKQPED------CLDELYDLMYSCWRADPKDRPTFTKLREVLEN  271 (273)
T ss_pred             -----CCCCcC------CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHh
Confidence                 011111      12356778889999999999999999999987

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=2.4e-32  Score=295.98  Aligned_cols=242  Identities=20%  Similarity=0.241  Sum_probs=183.7

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      +....+|+|++|.||+|+...++..||+|++..........+..|+..+.+ ++||||+++++++..++..|+||||+++
T Consensus        12 ~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~-~~h~~ii~~~~~~~~~~~~~iv~e~~~~   90 (267)
T cd06646          12 ELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKE-CKHCNIVAYFGSYLSREKLWICMEYCGG   90 (267)
T ss_pred             chhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHh-cCCCCeeeeeEEEEeCCEEEEEEeCCCC
Confidence            445567899999999999988899999998865433333456677777766 7999999999999999999999999999


Q ss_pred             CCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CC
Q 002105          766 KELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SK  836 (966)
Q Consensus       766 g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~  836 (966)
                      |+|.++++   .+++..+..++.|++.|++|||   ..+|+|||+||+||+++.+.  .+++.|+|.+....      ..
T Consensus        91 ~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nill~~~~--~~~l~dfg~~~~~~~~~~~~~~  165 (267)
T cd06646          91 GSLQDIYHVTGPLSELQIAYVCRETLQGLAYLH---SKGKMHRDIKGANILLTDNG--DVKLADFGVAAKITATIAKRKS  165 (267)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCC--CEEECcCccceeecccccccCc
Confidence            99999886   3788999999999999999999   55899999999999998654  47889999875421      22


Q ss_pred             CcCCcccccccccC---CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          837 SINSSAYVAPETKE---SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       837 ~~~~~~y~aPE~~~---~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      ..+++.|+|||.+.   ...++.++|||||||++|||++|+.|+...... +....+     ...   .+..+.... . 
T Consensus       166 ~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~-~~~~~~-----~~~---~~~~~~~~~-~-  234 (267)
T cd06646         166 FIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPM-RALFLM-----SKS---NFQPPKLKD-K-  234 (267)
T ss_pred             cccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchh-hhheee-----ecC---CCCCCCCcc-c-
Confidence            35778999999874   445788999999999999999999998532111 100000     000   001111111 0 


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                        .....++.+++.+|++.+|++||+++++++.
T Consensus       235 --~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  265 (267)
T cd06646         235 --TKWSSTFHNFVKISLTKNPKKRPTAERLLTH  265 (267)
T ss_pred             --cccCHHHHHHHHHHhhCChhhCcCHHHHhcC
Confidence              0112356678889999999999999998764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=4.9e-32  Score=295.51  Aligned_cols=241  Identities=18%  Similarity=0.284  Sum_probs=185.0

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ...+|.|++|.||+++...++..||+|.+.... ....+++..|+..+.+ ++||||+++++++..++..++||||+++|
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   84 (279)
T cd06619           6 QEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYK-CDSPYIIGFYGAFFVENRISICTEFMDGG   84 (279)
T ss_pred             eeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHh-CCCCCeeeEEEEEEECCEEEEEEecCCCC
Confidence            345788999999999998899999999885432 2223457788887777 69999999999999999999999999999


Q ss_pred             CHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----CCCCcCCcc
Q 002105          767 ELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----DSKSINSSA  842 (966)
Q Consensus       767 ~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  842 (966)
                      +|..+ ..+++.....++.|++.||+|||   +.+|+|+||||+||+++.+.  .+++.|||++...    .....+++.
T Consensus        85 ~l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nill~~~~--~~~l~dfg~~~~~~~~~~~~~~~~~~  158 (279)
T cd06619          85 SLDVY-RKIPEHVLGRIAVAVVKGLTYLW---SLKILHRDVKPSNMLVNTRG--QVKLCDFGVSTQLVNSIAKTYVGTNA  158 (279)
T ss_pred             ChHHh-hcCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCCHHHEEECCCC--CEEEeeCCcceecccccccCCCCChh
Confidence            99765 35788889999999999999999   56999999999999999754  5788999987542    233468889


Q ss_pred             cccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhh--HHHHHHHhhccCcccccccccccCCCcchHHHHH
Q 002105          843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHES--IVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIV  920 (966)
Q Consensus       843 y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  920 (966)
                      |+|||++.+..++.++|||||||++|||+||+.||.........  ..++... ....     ..+.....     ....
T Consensus       159 y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~-----~~~~  227 (279)
T cd06619         159 YMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQC-IVDE-----DPPVLPVG-----QFSE  227 (279)
T ss_pred             hcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHH-Hhcc-----CCCCCCCC-----cCCH
Confidence            99999999989999999999999999999999998653221110  0111111 1100     01111100     1112


Q ss_pred             HHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          921 EIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       921 ~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      ++.+++.+|++.+|++||+++|+++.
T Consensus       228 ~~~~li~~~l~~~P~~Rp~~~eil~~  253 (279)
T cd06619         228 KFVHFITQCMRKQPKERPAPENLMDH  253 (279)
T ss_pred             HHHHHHHHHhhCChhhCCCHHHHhcC
Confidence            46678889999999999999998764

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=2.6e-32  Score=294.56  Aligned_cols=239  Identities=18%  Similarity=0.322  Sum_probs=187.5

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|.|++|.||+|.... +..+|+|.+.........++..|+..+.+ ++||||+++++++..++..++||||+++|
T Consensus        10 ~~~~ig~g~~~~vy~~~~~~-~~~~~~k~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~lv~e~~~~~   87 (261)
T cd05148          10 LERKLGSGYFGEVWEGLWKN-RVRVAIKILKSDDLLKQQDFQKEVQALKR-LRHKHLISLFAVCSVGEPVYIITELMEKG   87 (261)
T ss_pred             HhhhhccCCCccEEEeEecC-CCcEEEEeccccchhhHHHHHHHHHHHhc-CCCcchhheeeeEecCCCeEEEEeecccC
Confidence            34456889999999999854 88999998865544345567778877777 69999999999999999999999999999


Q ss_pred             CHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------C
Q 002105          767 ELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------S  835 (966)
Q Consensus       767 ~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~  835 (966)
                      +|.++++.     ++|.++.+++.+++.|++|||   ..+|+||||||+||+++++.  .++++|+|.+....      .
T Consensus        88 ~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~h~dl~~~nilv~~~~--~~kl~d~g~~~~~~~~~~~~~  162 (261)
T cd05148          88 SLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLE---EQNSIHRDLAARNILVGEDL--VCKVADFGLARLIKEDVYLSS  162 (261)
T ss_pred             CHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccCcceEEEcCCc--eEEEccccchhhcCCcccccc
Confidence            99999963     789999999999999999999   56899999999999998654  57888998775321      1


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ...++..|+|||+.....++.++|||||||++|||++ |+.||....  .....+...   ....      +......  
T Consensus       163 ~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~--~~~~~~~~~---~~~~------~~~~~~~--  229 (261)
T cd05148         163 DKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMN--NHEVYDQIT---AGYR------MPCPAKC--  229 (261)
T ss_pred             CCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCC--HHHHHHHHH---hCCc------CCCCCCC--
Confidence            2234568999999988889999999999999999998 899986432  111112221   1100      0011111  


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                          ..++.+++.+|++.+|.+|||++++.+.|+.
T Consensus       230 ----~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~  260 (261)
T cd05148         230 ----PQEIYKIMLECWAAEPEDRPSFKALREELDN  260 (261)
T ss_pred             ----CHHHHHHHHHHcCCCchhCcCHHHHHHHHhc
Confidence                1356678889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=3.8e-32  Score=292.76  Aligned_cols=234  Identities=25%  Similarity=0.403  Sum_probs=179.4

Q ss_pred             cCCCCCccEEEEEEEecCC----------cEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          690 SRGKKGVSSSYKVRSLAND----------MQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~----------~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      .+|+|++|.||+|.....+          ..+++|.+...... ...|.+|+..+.+ ++||||++++|++.. +..++|
T Consensus         2 ~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~-l~h~~i~~~~~~~~~-~~~~lv   78 (259)
T cd05037           2 HLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQ-LSHKHLVKLYGVCVR-DENIMV   78 (259)
T ss_pred             cccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHc-CCCcchhheeeEEec-CCcEEE
Confidence            3688999999999986655          34667765433222 5667788877777 699999999999988 778999


Q ss_pred             EEccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCc-----eEEEeccccc
Q 002105          760 YEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEP-----HLRLSVPGLA  830 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~-----~~~~~~~~~~  830 (966)
                      |||+++|+|.++++    .+++..+..++.||+.||+|||   ..+|+||||||+||+++.+...     .++++|||.+
T Consensus        79 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a  155 (259)
T cd05037          79 EEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLE---DKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIP  155 (259)
T ss_pred             EEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh---hCCeecccCccceEEEecCccccCCceeEEeCCCCcc
Confidence            99999999999986    3789999999999999999999   5699999999999999866532     6889999987


Q ss_pred             eecCC--CCcCCcccccccccCCC--CCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCccccccc
Q 002105          831 YCTDS--KSINSSAYVAPETKESK--DITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVD  905 (966)
Q Consensus       831 ~~~~~--~~~~~~~y~aPE~~~~~--~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  905 (966)
                      .....  ...++..|+|||++.+.  .++.++|||||||++|||++ |..|+.... ..+.. .+..    ...    ..
T Consensus       156 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~-~~~~~-~~~~----~~~----~~  225 (259)
T cd05037         156 ITVLSREERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLS-SSEKE-RFYQ----DQH----RL  225 (259)
T ss_pred             cccccccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCC-chhHH-HHHh----cCC----CC
Confidence            65322  33567789999998876  78999999999999999999 466765431 11111 1111    000    00


Q ss_pred             ccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       906 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                      |.     +    ....+.+++.+||+.+|.+|||+.||++.|+
T Consensus       226 ~~-----~----~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~  259 (259)
T cd05037         226 PM-----P----DCAELANLINQCWTYDPTKRPSFRAILRDLN  259 (259)
T ss_pred             CC-----C----CchHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence            00     0    0146778889999999999999999998874

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1.9e-33  Score=312.69  Aligned_cols=229  Identities=21%  Similarity=0.332  Sum_probs=177.6

Q ss_pred             cCCCCCccEEEEEEEe---cCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          690 SRGKKGVSSSYKVRSL---ANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~---~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .+|+|++|.||+++..   .+|..||+|++.....  .....+..|+..+.+ ++|||||++++++..++..|+||||++
T Consensus         3 ~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           3 VLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAE-VNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             eeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHh-CCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            4689999999998763   4678999998865321  122345667777766 699999999999999999999999999


Q ss_pred             CCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------C
Q 002105          765 GKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------S  835 (966)
Q Consensus       765 ~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~  835 (966)
                      +|+|.+++..   +++.....++.||++||+|||   +.+|+||||||+||+++.+.  .++++|||++....      .
T Consensus        82 ~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~--~~kL~Dfg~~~~~~~~~~~~~  156 (318)
T cd05582          82 GGDLFTRLSKEVMFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEG--HIKLTDFGLSKESIDHEKKAY  156 (318)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHeEECCCC--cEEEeeccCCcccCCCCCcee
Confidence            9999999863   889999999999999999999   56899999999999998654  47889999875421      1


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...|++.|+|||++.+..++.++|||||||++|||+||+.||....  .....+.   .... ..      .+....+  
T Consensus       157 ~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~--~~~~~~~---i~~~-~~------~~p~~~~--  222 (318)
T cd05582         157 SFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKD--RKETMTM---ILKA-KL------GMPQFLS--  222 (318)
T ss_pred             cccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCC--HHHHHHH---HHcC-CC------CCCCCCC--
Confidence            2457899999999998889999999999999999999999987531  1111111   1111 00      0111111  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASD  942 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~  942 (966)
                          .++.+++.+|++.||++||++.+
T Consensus       223 ----~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         223 ----PEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             ----HHHHHHHHHHhhcCHhHcCCCCC
Confidence                24556778999999999999655

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=7.4e-33  Score=308.30  Aligned_cols=230  Identities=17%  Similarity=0.272  Sum_probs=178.8

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ...+|+|++|.||+|+...+|..||+|++.....   ...+.+..|+..+....+||+|+++++++.+++..|+||||++
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~Ey~~   84 (323)
T cd05615           5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVMEYVN   84 (323)
T ss_pred             EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEcCCC
Confidence            3457899999999999988999999998864321   2223456677666664457889999999999999999999999


Q ss_pred             CCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CC
Q 002105          765 GKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DS  835 (966)
Q Consensus       765 ~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~  835 (966)
                      +|+|.+++.   .+++.+...++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||++...      ..
T Consensus        85 ~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH---~~~ivHrDikp~Nill~~~~--~ikL~Dfg~~~~~~~~~~~~~  159 (323)
T cd05615          85 GGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLH---RRGIIYRDLKLDNVMLDSEG--HIKIADFGMCKEHMVDGVTTR  159 (323)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCC--CEEEeccccccccCCCCcccc
Confidence            999999986   3899999999999999999999   56999999999999999654  5789999987542      12


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...||+.|+|||++.+..++.++|||||||++|||+||+.||....  .....+...   .. ..      ......+  
T Consensus       160 ~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~--~~~~~~~i~---~~-~~------~~p~~~~--  225 (323)
T cd05615         160 TFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGED--EDELFQSIM---EH-NV------SYPKSLS--  225 (323)
T ss_pred             CccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCC--HHHHHHHHH---hC-CC------CCCccCC--
Confidence            3458999999999999999999999999999999999999997542  111111111   10 00      0111111  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCA  940 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~  940 (966)
                          .++.+++.+|++.+|.+|++.
T Consensus       226 ----~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05615         226 ----KEAVSICKGLMTKHPSKRLGC  246 (323)
T ss_pred             ----HHHHHHHHHHcccCHhhCCCC
Confidence                245667889999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=5.6e-32  Score=297.80  Aligned_cols=247  Identities=22%  Similarity=0.322  Sum_probs=185.4

Q ss_pred             cccccCCCCCccEEEEEEEecCC----------------cEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEee
Q 002105          686 ENLTSRGKKGVSSSYKVRSLAND----------------MQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHG  748 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~----------------~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g  748 (966)
                      .....+|+|++|.||++.....+                ..||+|++..... ...+++.+|+..+.+ ++||||+++++
T Consensus         8 ~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~   86 (296)
T cd05051           8 NFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSR-LSDPNIARLLG   86 (296)
T ss_pred             cccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHh-cCCCCEeEEEE
Confidence            34456799999999998875433                4578888764322 234567788888888 69999999999


Q ss_pred             EEecCCeeEEEEEccCCCCHHHHHH--------------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEE
Q 002105          749 VCRSEKAAYLVYEYIEGKELSEVLR--------------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV  814 (966)
Q Consensus       749 ~~~~~~~~~lv~Ey~~~g~L~~~l~--------------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill  814 (966)
                      +|..++..++||||+++++|.+++.              .+++.....++.|++.||+|||   +.+|+||||||+||++
T Consensus        87 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH---~~~i~H~dlkp~Nili  163 (296)
T cd05051          87 VCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLE---SLNFVHRDLATRNCLV  163 (296)
T ss_pred             EEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHH---HcCccccccchhceee
Confidence            9999999999999999999999985              3678899999999999999999   4589999999999999


Q ss_pred             cCCCCceEEEeccccceec--------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc--CCCCCCCCCCch
Q 002105          815 DGKDEPHLRLSVPGLAYCT--------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT--GKSPADADFGVH  884 (966)
Q Consensus       815 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t--g~~p~~~~~~~~  884 (966)
                      +.+  ..++++|||.+...        .....+++.|||||+..+..++.++|||||||++|||++  |..|+....  .
T Consensus       164 ~~~--~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~--~  239 (296)
T cd05051         164 GKN--YTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLT--D  239 (296)
T ss_pred             cCC--CceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcC--h
Confidence            976  45788999987532        122345678999999988889999999999999999998  667775321  1


Q ss_pred             hhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          885 ESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       885 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                      ..+.+.+...+....... ..+..       .....++.+++.+|++.||++||||.||++.|+
T Consensus       240 ~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~  295 (296)
T cd05051         240 QQVIENAGHFFRDDGRQI-YLPRP-------PNCPKDIYELMLECWRRDEEDRPTFREIHLFLQ  295 (296)
T ss_pred             HHHHHHHHhccccccccc-cCCCc-------cCCCHHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence            122222222211111111 00000       011236778899999999999999999999886

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=9.7e-33  Score=312.82  Aligned_cols=240  Identities=20%  Similarity=0.299  Sum_probs=180.9

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|++|.||+++...++..||+|++.....   ...+.+..|+..+.+ ++|||||++++++.+++..|+||||
T Consensus        46 ~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~-~~h~~iv~~~~~~~~~~~~~lv~Ey  124 (370)
T cd05596          46 DVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAH-ANSEWIVQLHYAFQDDKYLYMVMEY  124 (370)
T ss_pred             EEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHh-CCCCCcceEEEEEecCCEEEEEEcC
Confidence            344567999999999999988999999999864321   122235566666655 7999999999999999999999999


Q ss_pred             cCCCCHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          763 IEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       763 ~~~g~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      +++|+|.++++.  ++......++.|++.||+|||   +.+|+||||||+|||++.++  .++++|||++....      
T Consensus       125 ~~gg~L~~~l~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~--~~kL~DfG~~~~~~~~~~~~  199 (370)
T cd05596         125 MPGGDLVNLMSNYDIPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSG--HLKLADFGTCMKMDANGMVR  199 (370)
T ss_pred             CCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEcCCC--CEEEEeccceeeccCCCccc
Confidence            999999999864  777888889999999999999   56899999999999998654  57889999875422      


Q ss_pred             -CCCcCCcccccccccCCC----CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccccc
Q 002105          835 -SKSINSSAYVAPETKESK----DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~----~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                       ....||+.|||||++.+.    .++.++|||||||++|||+||+.||..... .... +   .........  ..|.. 
T Consensus       200 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~-~~~~-~---~i~~~~~~~--~~~~~-  271 (370)
T cd05596         200 CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL-VGTY-S---KIMDHKNSL--TFPDD-  271 (370)
T ss_pred             CCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCH-HHHH-H---HHHcCCCcC--CCCCc-
Confidence             234689999999987653    478999999999999999999999975421 1111 1   111110000  00100 


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCC--CCCHHHHHH
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTA--RPCASDVTK  945 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~--RPt~~~v~~  945 (966)
                      ...   .   .++.+++.+|++.+|.+  ||++.|++.
T Consensus       272 ~~~---s---~~~~~li~~~L~~~p~r~~R~s~~ell~  303 (370)
T cd05596         272 IEI---S---KQAKDLICAFLTDREVRLGRNGVDEIKS  303 (370)
T ss_pred             CCC---C---HHHHHHHHHHccChhhccCCCCHHHHhc
Confidence            011   1   24556778899999988  999999864

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=3.4e-32  Score=318.25  Aligned_cols=237  Identities=19%  Similarity=0.271  Sum_probs=182.5

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCC--------e
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK--------A  755 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~--------~  755 (966)
                      .....+|+|+||.||+++...+|..||||++....  ......+.+|+..+.. ++|+|||++++.+...+        .
T Consensus        35 ~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~-~~h~~iv~~~~~~~~~~~~~~~~~~~  113 (496)
T PTZ00283         35 WISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLN-CDFFSIVKCHEDFAKKDPRNPENVLM  113 (496)
T ss_pred             EEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhc-CCCCcEEEeecceecccccCcccceE
Confidence            33445799999999999998999999999885432  2223346677777766 69999999998775432        3


Q ss_pred             eEEEEEccCCCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccc
Q 002105          756 AYLVYEYIEGKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPG  828 (966)
Q Consensus       756 ~~lv~Ey~~~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~  828 (966)
                      .++||||+++|+|.++++       .+++.....++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||
T Consensus       114 i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH---~~~IiHrDLKP~NILl~~~~--~vkL~DFG  188 (496)
T PTZ00283        114 IALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVH---SKHMIHRDIKSANILLCSNG--LVKLGDFG  188 (496)
T ss_pred             EEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEeCCC--CEEEEecc
Confidence            689999999999999985       2778888999999999999999   56999999999999999654  57899999


Q ss_pred             cceec--------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcc
Q 002105          829 LAYCT--------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHL  900 (966)
Q Consensus       829 ~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  900 (966)
                      ++...        .....||+.|||||++.+..++.++|||||||++|||++|+.||....  ..   +.........  
T Consensus       189 ls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~--~~---~~~~~~~~~~--  261 (496)
T PTZ00283        189 FSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGEN--ME---EVMHKTLAGR--  261 (496)
T ss_pred             cCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC--HH---HHHHHHhcCC--
Confidence            87532        123468999999999999999999999999999999999999997531  11   1221111111  


Q ss_pred             cccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          901 DTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       901 ~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         .++ +....+      .++.+++.+||+.||.+||++.++++
T Consensus       262 ---~~~-~~~~~~------~~l~~li~~~L~~dP~~RPs~~ell~  296 (496)
T PTZ00283        262 ---YDP-LPPSIS------PEMQEIVTALLSSDPKRRPSSSKLLN  296 (496)
T ss_pred             ---CCC-CCCCCC------HHHHHHHHHHcccChhhCcCHHHHHh
Confidence               111 111111      24667888999999999999999875

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-32  Score=313.71  Aligned_cols=240  Identities=17%  Similarity=0.253  Sum_probs=189.5

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEee-EEec---C---CeeEEEEEc
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHG-VCRS---E---KAAYLVYEY  762 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g-~~~~---~---~~~~lv~Ey  762 (966)
                      .+.+|||+.||.|.....|..+|+||+.-.+....+...+|+..+.++-.|||||.++| ....   +   -+++|.|||
T Consensus        44 vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~EvllLmEy  123 (738)
T KOG1989|consen   44 VLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEVLLLMEY  123 (738)
T ss_pred             EEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEEEeehhh
Confidence            45678999999999977779999999987777667778888888877655999999999 4332   1   367899999


Q ss_pred             cCCCCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC--
Q 002105          763 IEGKELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--  835 (966)
Q Consensus       763 ~~~g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~--  835 (966)
                      |+||.|-+++.     .|++.+.++|+.++++|+++||.. .++|||||||.+||||+.+.  .+|++|||-+.....  
T Consensus       124 C~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g--~~KLCDFGSatt~~~~~  200 (738)
T KOG1989|consen  124 CKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADG--NYKLCDFGSATTKILSP  200 (738)
T ss_pred             ccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCC--CEEeCcccccccccCCC
Confidence            99999999985     489999999999999999999965 89999999999999999665  689999998743110  


Q ss_pred             -------------CCcCCccccccccc---CCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCc
Q 002105          836 -------------KSINSSAYVAPETK---ESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCH  899 (966)
Q Consensus       836 -------------~~~~~~~y~aPE~~---~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  899 (966)
                                   ....|+.|.|||.+   .+..+++|+||||+||+||-|+....||+..- ...++         ...
T Consensus       201 ~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg-~laIl---------ng~  270 (738)
T KOG1989|consen  201 TSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESG-KLAIL---------NGN  270 (738)
T ss_pred             ccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCc-ceeEE---------ecc
Confidence                         12458899999975   57789999999999999999999999997531 10000         001


Q ss_pred             ccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          900 LDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       900 ~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      ..  +.        ........+.+|+..|++.+|.+||++-+|+..+-+ +..
T Consensus       271 Y~--~P--------~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~-l~~  313 (738)
T KOG1989|consen  271 YS--FP--------PFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFE-LAN  313 (738)
T ss_pred             cc--CC--------CCccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHH-Hhc
Confidence            10  11        112333467778889999999999999999999887 443

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=6.9e-32  Score=290.54  Aligned_cols=235  Identities=20%  Similarity=0.293  Sum_probs=183.3

Q ss_pred             CCCCCccEEEEEEEec-CCc--EEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          691 RGKKGVSSSYKVRSLA-NDM--QFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~-~~~--~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      +|+|++|.||+|.... .+.  .||+|.+..... ...+.+..|+..+.+ ++|||||++++++.. ...++||||+++|
T Consensus         3 ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~-~~~~~v~e~~~~~   80 (257)
T cd05040           3 LGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHS-LDHENLIRLYGVVLT-HPLMMVTELAPLG   80 (257)
T ss_pred             CCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhh-cCCCCccceeEEEcC-CeEEEEEEecCCC
Confidence            5889999999999754 333  589998865443 344567888888888 699999999999988 8899999999999


Q ss_pred             CHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC------
Q 002105          767 ELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS------  835 (966)
Q Consensus       767 ~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~------  835 (966)
                      +|.+++..     ++|.....++.|++.||+|||   ..+++||||||+||+++.+  ..+++.|||.+.....      
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~di~p~nil~~~~--~~~kl~dfg~~~~~~~~~~~~~  155 (257)
T cd05040          81 SLLDRLRKDALGHFLISTLCDYAVQIANGMRYLE---SKRFIHRDLAARNILLASD--DKVKIGDFGLMRALPQNEDHYV  155 (257)
T ss_pred             cHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHH---hCCccccccCcccEEEecC--CEEEecccccccccccccccee
Confidence            99999853     689999999999999999999   5699999999999999966  5678999998754221      


Q ss_pred             ---CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCC
Q 002105          836 ---KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH  911 (966)
Q Consensus       836 ---~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  911 (966)
                         ...++..|+|||+..+..++.++|||||||++|||+| |+.|+..... .+.. +....  ..   ..+..|   . 
T Consensus       156 ~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~-~~~~-~~~~~--~~---~~~~~~---~-  224 (257)
T cd05040         156 MEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSG-SQIL-KKIDK--EG---ERLERP---E-  224 (257)
T ss_pred             cccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCH-HHHH-HHHHh--cC---CcCCCC---c-
Confidence               2345678999999999899999999999999999999 9999864311 1111 11111  00   000111   0 


Q ss_pred             CcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          912 VSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       912 ~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                           .....+.+++.+|++.+|++||++.||++.|.
T Consensus       225 -----~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  256 (257)
T cd05040         225 -----ACPQDIYNVMLQCWAHNPADRPTFAALREFLP  256 (257)
T ss_pred             -----cCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence                 11235677888999999999999999999875

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=4.1e-32  Score=298.39  Aligned_cols=242  Identities=22%  Similarity=0.336  Sum_probs=184.1

Q ss_pred             cccCCCCCccEEEEEEEecC-----CcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLAN-----DMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~-----~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ...+|+|++|.||++.....     ...+|+|++.... .....++.+|+..+.++.+||||++++++|..++..++|||
T Consensus        17 ~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~li~e   96 (293)
T cd05053          17 GKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGPLYVVVE   96 (293)
T ss_pred             eeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCCCeEEEEE
Confidence            44568999999999987533     3678888875432 12223577788776663389999999999999999999999


Q ss_pred             ccCCCCHHHHHH-------------------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceE
Q 002105          762 YIEGKELSEVLR-------------------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL  822 (966)
Q Consensus       762 y~~~g~L~~~l~-------------------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~  822 (966)
                      |+++|+|.++++                   .++|..+.+++.|++.||+|||   ..+|+||||||+||+++.+  ..+
T Consensus        97 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~Nil~~~~--~~~  171 (293)
T cd05053          97 YAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLA---SKKCIHRDLAARNVLVTED--HVM  171 (293)
T ss_pred             eCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---HCCccccccceeeEEEcCC--CeE
Confidence            999999999984                   3788999999999999999999   5689999999999999865  457


Q ss_pred             EEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHH
Q 002105          823 RLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARY  893 (966)
Q Consensus       823 ~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~  893 (966)
                      +++|||.+....        ....++..|+|||+..+..++.++|||||||++||+++ |..|+....  .....+... 
T Consensus       172 kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~--~~~~~~~~~-  248 (293)
T cd05053         172 KIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP--VEELFKLLK-  248 (293)
T ss_pred             EeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCC--HHHHHHHHH-
Confidence            899999875321        11234567999999988899999999999999999998 888886431  111111111 


Q ss_pred             hhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 002105          894 CYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCF  951 (966)
Q Consensus       894 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~  951 (966)
                        .....      ....      ....++.+++.+|++.+|++||||.||++.|++.+
T Consensus       249 --~~~~~------~~~~------~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~~  292 (293)
T cd05053         249 --EGYRM------EKPQ------NCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRML  292 (293)
T ss_pred             --cCCcC------CCCC------CCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence              11000      0001      11235778899999999999999999999999843

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-32  Score=312.53  Aligned_cols=188  Identities=20%  Similarity=0.349  Sum_probs=159.3

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ....+|+|++|.||+++...++..||||++.....   .....+..|+..+.+ ++|||||++++++.+++..|+||||+
T Consensus         5 ~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~-l~h~~iv~~~~~~~~~~~~~lv~E~~   83 (364)
T cd05599           5 SIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAE-ADNPWVVKLYYSFQDENYLYLIMEYL   83 (364)
T ss_pred             EEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHh-CCCCCCcceEEEEEcCCeEEEEECCC
Confidence            34567999999999999988999999999864321   122335567766666 79999999999999999999999999


Q ss_pred             CCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          764 EGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       764 ~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      ++|+|.+++..   +++.....++.|++.||+|||   ..+|+||||||+|||++.+.  .++++|||++....      
T Consensus        84 ~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~--~~kl~Dfg~~~~~~~~~~~~  158 (364)
T cd05599          84 PGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIH---KLGYIHRDIKPDNLLLDAKG--HIKLSDFGLCTGLKKSHRTE  158 (364)
T ss_pred             CCcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCC--CEEEeecccceecccccccc
Confidence            99999999863   789999999999999999999   55899999999999999755  46888998764311      


Q ss_pred             --------------------------------------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCC
Q 002105          835 --------------------------------------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP  876 (966)
Q Consensus       835 --------------------------------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p  876 (966)
                                                            ...+||+.|||||++....++.++|||||||++|||++|+.|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~P  238 (364)
T cd05599         159 FYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPP  238 (364)
T ss_pred             ccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCC
Confidence                                                  013589999999999999999999999999999999999999


Q ss_pred             CCCC
Q 002105          877 ADAD  880 (966)
Q Consensus       877 ~~~~  880 (966)
                      |...
T Consensus       239 f~~~  242 (364)
T cd05599         239 FCSD  242 (364)
T ss_pred             CCCC
Confidence            9754

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.1e-33  Score=307.83  Aligned_cols=236  Identities=20%  Similarity=0.312  Sum_probs=183.3

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEE--EEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCe--eEEEEEcc
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVV--KKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKA--AYLVYEYI  763 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vav--k~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~--~~lv~Ey~  763 (966)
                      .+|+|.|=.||||-+..+|.+||=  +++.+...  ...+.|..|+..+.. +.|||||++|.++.+...  .-+|+|.|
T Consensus        47 vLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKs-L~H~NIirfy~SW~d~~n~~in~iTEL~  125 (632)
T KOG0584|consen   47 VLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKS-LKHPNIIRFYDSWVDTDNKTINFITELF  125 (632)
T ss_pred             hcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHcc-CCCCceeeeeeheecCCCceeeeeeecc
Confidence            468888888999999888988872  22222222  223567788877777 799999999999987654  78899999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----CCC
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----DSK  836 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----~~~  836 (966)
                      ..|+|..|++   +.+......+|.||.+||.|||.+ .|||||||||.+||+++++ .+.||++|.|+|...    ...
T Consensus       126 TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~-~G~VKIGDLGLAtl~r~s~aks  203 (632)
T KOG0584|consen  126 TSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGN-LGEVKIGDLGLATLLRKSHAKS  203 (632)
T ss_pred             cCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCC-cCceeecchhHHHHhhccccce
Confidence            9999999996   478888899999999999999987 8999999999999999975 467899999998653    234


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchH
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ  916 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  916 (966)
                      .+|||.|||||.+. ..|++.+||||||+.|+||+|+..||........+. +.+........+...-            
T Consensus       204 vIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIY-KKV~SGiKP~sl~kV~------------  269 (632)
T KOG0584|consen  204 VIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIY-KKVTSGIKPAALSKVK------------  269 (632)
T ss_pred             eccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHH-HHHHcCCCHHHhhccC------------
Confidence            68999999999887 789999999999999999999999997543322222 2222111111111111            


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          917 NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       917 ~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                        -.++.+++.+|+.. .++|||+.|+++
T Consensus       270 --dPevr~fIekCl~~-~~~R~sa~eLL~  295 (632)
T KOG0584|consen  270 --DPEVREFIEKCLAT-KSERLSAKELLK  295 (632)
T ss_pred             --CHHHHHHHHHHhcC-chhccCHHHHhh
Confidence              13567788899999 899999999874

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=5.3e-32  Score=299.57  Aligned_cols=245  Identities=20%  Similarity=0.314  Sum_probs=185.6

Q ss_pred             ccccCCCCCccEEEEEEEec-------CCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLA-------NDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL  758 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~-------~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~l  758 (966)
                      ....+|+|++|.||+++...       .+..+|+|.+.... .....++..|+..+.++.+||||++++++|..++..|+
T Consensus        22 i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~l  101 (307)
T cd05098          22 LGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYV  101 (307)
T ss_pred             EeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEE
Confidence            34457999999999998643       23468888875432 22234577788877774489999999999999999999


Q ss_pred             EEEccCCCCHHHHHHc-------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC
Q 002105          759 VYEYIEGKELSEVLRN-------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE  819 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~~-------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~  819 (966)
                      ||||+++|+|.++++.                   ++|.++.+++.|++.||+|||   ..+++||||||+||+++.+. 
T Consensus       102 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~gi~H~dlkp~Nill~~~~-  177 (307)
T cd05098         102 IVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDN-  177 (307)
T ss_pred             EEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---HCCcccccccHHheEEcCCC-
Confidence            9999999999999952                   788999999999999999999   55999999999999998654 


Q ss_pred             ceEEEeccccceecCC--------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHH
Q 002105          820 PHLRLSVPGLAYCTDS--------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEW  890 (966)
Q Consensus       820 ~~~~~~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~  890 (966)
                       .++++|||.+.....        ...+++.|||||+..+..++.++|||||||++|||++ |+.|+....  .+.+.+.
T Consensus       178 -~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~--~~~~~~~  254 (307)
T cd05098         178 -VMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP--VEELFKL  254 (307)
T ss_pred             -cEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCC--HHHHHHH
Confidence             578899998753211        1123467999999988889999999999999999998 888886431  1111111


Q ss_pred             HHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          891 ARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       891 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      ..   .....      .....      ...++.+++.+|++.+|++||+|.||++.|++++..
T Consensus       255 ~~---~~~~~------~~~~~------~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~~~  302 (307)
T cd05098         255 LK---EGHRM------DKPSN------CTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILAL  302 (307)
T ss_pred             HH---cCCCC------CCCCc------CCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHHH
Confidence            11   11100      00111      123566788899999999999999999999995543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=4.5e-32  Score=294.13  Aligned_cols=239  Identities=21%  Similarity=0.349  Sum_probs=184.1

Q ss_pred             ccCCCCCccEEEEEEEecCCc---EEEEEEEecc-CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          689 TSRGKKGVSSSYKVRSLANDM---QFVVKKIIDV-NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~---~vavk~~~~~-~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ..+|+|++|.||+|+...++.   .||+|.+... ......+|..|+..+.+ ++||||+++++++..++..++||||++
T Consensus        10 ~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~-l~h~ni~~~~~~~~~~~~~~lv~e~~~   88 (269)
T cd05065          10 EVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQ-FDHPNIIHLEGVVTKSRPVMIITEFME   88 (269)
T ss_pred             eEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHh-CCCcCcceEEEEECCCCceEEEEecCC
Confidence            446899999999999866654   5899987543 22234567888887777 799999999999999999999999999


Q ss_pred             CCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCC----
Q 002105          765 GKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK----  836 (966)
Q Consensus       765 ~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~----  836 (966)
                      +|+|.++++.    +++.++..++.|++.|++|||   ..+++||||||+||+++.+.  .+++.|||.+......    
T Consensus        89 ~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH---~~g~~H~dl~p~nili~~~~--~~kl~dfg~~~~~~~~~~~~  163 (269)
T cd05065          89 NGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLS---EMNYVHRDLAARNILVNSNL--VCKVSDFGLSRFLEDDTSDP  163 (269)
T ss_pred             CCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccChheEEEcCCC--cEEECCCccccccccCcccc
Confidence            9999999863    789999999999999999999   56999999999999998654  5788899876432110    


Q ss_pred             ----Cc---CCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccc
Q 002105          837 ----SI---NSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI  908 (966)
Q Consensus       837 ----~~---~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  908 (966)
                          ..   .+..|+|||+..+..++.++|||||||++||+++ |+.||....  ...+.+++..   ....     |. 
T Consensus       164 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~--~~~~~~~i~~---~~~~-----~~-  232 (269)
T cd05065         164 TYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMS--NQDVINAIEQ---DYRL-----PP-  232 (269)
T ss_pred             ccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCC--HHHHHHHHHc---CCcC-----CC-
Confidence                01   1346999999999999999999999999999887 999986431  1222233321   1000     10 


Q ss_pred             cCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 002105          909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESC  950 (966)
Q Consensus       909 ~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~  950 (966)
                      ....      ...+.+++.+||+.+|++||+|++|+.+|+++
T Consensus       233 ~~~~------~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         233 PMDC------PTALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             cccC------CHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            0111      23466788899999999999999999999873

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=8.3e-32  Score=290.84  Aligned_cols=238  Identities=19%  Similarity=0.318  Sum_probs=182.5

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|+|++|.||+|.. .++..||+|++.... ...+.|.+|+..+.+ ++||||+++++++.+ +..++||||+++|+
T Consensus        11 ~~~lg~g~~~~v~~~~~-~~~~~valK~~~~~~-~~~~~~~~E~~~l~~-l~~~~i~~~~~~~~~-~~~~lv~e~~~~~~   86 (262)
T cd05071          11 EVKLGQGCFGEVWMGTW-NGTTRVAIKTLKPGT-MSPEAFLQEAQVMKK-LRHEKLVQLYAVVSE-EPIYIVTEYMSKGS   86 (262)
T ss_pred             eeecCCCCCCcEEEEEe-cCCceEEEEecccCc-cCHHHHHHHHHHHHh-CCCCCcceEEEEECC-CCcEEEEEcCCCCc
Confidence            44578999999999987 455579999876432 233567888887777 799999999998754 56799999999999


Q ss_pred             HHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-------
Q 002105          768 LSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-------  835 (966)
Q Consensus       768 L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-------  835 (966)
                      |.++++.     ++|..+..++.|++.||+|||   +.+++||||||+||+++++.  .+++.|||.+.....       
T Consensus        87 L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~Nill~~~~--~~~L~dfg~~~~~~~~~~~~~~  161 (262)
T cd05071          87 LLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENL--VCKVADFGLARLIEDNEYTARQ  161 (262)
T ss_pred             HHHHHhhccccCCCHHHHHHHHHHHHHHHHHHH---HCCccccccCcccEEEcCCC--cEEeccCCceeecccccccccc
Confidence            9999963     789999999999999999999   56899999999999998654  468889988754221       


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ...++..|+|||+..+..++.++|||||||++|||+| |+.||.....  ....+   ........     + ..     
T Consensus       162 ~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~--~~~~~---~~~~~~~~-----~-~~-----  225 (262)
T cd05071         162 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN--REVLD---QVERGYRM-----P-CP-----  225 (262)
T ss_pred             CCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCh--HHHHH---HHhcCCCC-----C-Cc-----
Confidence            1234567999999988899999999999999999999 8888865421  11111   11111000     0 01     


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCF  951 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~  951 (966)
                       .+....+.+++.+|++.+|++||+++++.+.|+.++
T Consensus       226 -~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~~  261 (262)
T cd05071         226 -PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF  261 (262)
T ss_pred             -cccCHHHHHHHHHHccCCcccCCCHHHHHHHHHHhc
Confidence             112235678899999999999999999999999854

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.3e-33  Score=311.74  Aligned_cols=237  Identities=21%  Similarity=0.316  Sum_probs=182.6

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ...+|+|++|.||+|+...++..||+|++.....   .....+..|+..+.+ ++||||+++++++.+++..|+||||++
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~-~~~~~i~~~~~~~~~~~~~~lv~e~~~   84 (350)
T cd05573           6 IKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILAD-ADSPWIVKLYYSFQDEEHLYLVMEYMP   84 (350)
T ss_pred             EEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHh-cCCCCccchhhheecCCeEEEEEcCCC
Confidence            4457899999999999988999999999864321   223346667766666 699999999999999999999999999


Q ss_pred             CCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-------
Q 002105          765 GKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------  834 (966)
Q Consensus       765 ~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-------  834 (966)
                      +|+|.+++.   .+++.....++.||+.||+|||   ..+|+||||||+||+++.+.  .+++.|||.+....       
T Consensus        85 ~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH---~~giiH~Dlkp~NIll~~~~--~~kL~Dfg~~~~~~~~~~~~~  159 (350)
T cd05573          85 GGDLMNLLIRKDVFPEETARFYIAELVLALDSVH---KLGFIHRDIKPDNILIDADG--HIKLADFGLCKKMNKAKDREY  159 (350)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCC--CEEeecCCCCccCcccCcccc
Confidence            999999986   3788999999999999999999   56999999999999999764  47889999875321       


Q ss_pred             ----------------------------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhh
Q 002105          835 ----------------------------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHES  886 (966)
Q Consensus       835 ----------------------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~  886 (966)
                                                  ....||+.|+|||++.+..++.++|||||||++|||++|+.||..... ...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~-~~~  238 (350)
T cd05573         160 YLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTL-QET  238 (350)
T ss_pred             cccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCH-HHH
Confidence                                        123588999999999999999999999999999999999999875421 111


Q ss_pred             HHHHHHHhhc-cCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCC-HHHHHHH
Q 002105          887 IVEWARYCYS-DCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPC-ASDVTKT  946 (966)
Q Consensus       887 ~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt-~~~v~~~  946 (966)
                         + ..... ....   .-|... ..   .+   ++.+++.+|++ ||.+||+ ++|+++.
T Consensus       239 ---~-~~i~~~~~~~---~~p~~~-~~---~~---~~~~li~~ll~-dp~~R~~s~~~ll~h  285 (350)
T cd05573         239 ---Y-NKIINWKESL---RFPPDP-PV---SP---EAIDLICRLLC-DPEDRLGSFEEIKSH  285 (350)
T ss_pred             ---H-HHHhccCCcc---cCCCCC-CC---CH---HHHHHHHHHcc-ChhhcCCCHHHHhcC
Confidence               1 11111 0000   011100 01   12   45566678997 9999999 9999863

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=5.5e-32  Score=299.06  Aligned_cols=243  Identities=20%  Similarity=0.339  Sum_probs=183.7

Q ss_pred             cccCCCCCccEEEEEEEe-------cCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          688 LTSRGKKGVSSSYKVRSL-------ANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~-------~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      ...+|+||+|.||+++..       .++..||+|+..... ....+++.+|+..+.++-+||||+++++++..++..|+|
T Consensus        20 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv   99 (304)
T cd05101          20 GKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVI   99 (304)
T ss_pred             cceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecCCceEEE
Confidence            345789999999999753       234578888775432 222345778887776633899999999999999999999


Q ss_pred             EEccCCCCHHHHHHc-------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCc
Q 002105          760 YEYIEGKELSEVLRN-------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEP  820 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~-------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~  820 (966)
                      |||+++|+|.+++..                   ++|.++..++.||++||+|||   ..+|+||||||+||+++++.  
T Consensus       100 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~givH~dlkp~Nili~~~~--  174 (304)
T cd05101         100 VEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLA---SQKCIHRDLAARNVLVTENN--  174 (304)
T ss_pred             EecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHH---HCCeeecccccceEEEcCCC--
Confidence            999999999999852                   578889999999999999999   55999999999999998654  


Q ss_pred             eEEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHH
Q 002105          821 HLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWA  891 (966)
Q Consensus       821 ~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~  891 (966)
                      .++++|+|.+....        ....+++.|+|||+..+..++.++|||||||++||++| |..|+....  ..   ++.
T Consensus       175 ~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~--~~---~~~  249 (304)
T cd05101         175 VMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP--VE---ELF  249 (304)
T ss_pred             cEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC--HH---HHH
Confidence            57889999875421        11234568999999998889999999999999999998 788875431  11   121


Q ss_pred             HHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          892 RYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       892 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      .........   ..|   .      ....++.+++.+||+.+|++||+|.||++.|++++.
T Consensus       250 ~~~~~~~~~---~~~---~------~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~  298 (304)
T cd05101         250 KLLKEGHRM---DKP---A------NCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRILT  298 (304)
T ss_pred             HHHHcCCcC---CCC---C------CCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHHH
Confidence            111111110   001   1      112356678889999999999999999999998544

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=7.7e-32  Score=292.79  Aligned_cols=238  Identities=19%  Similarity=0.299  Sum_probs=179.4

Q ss_pred             cCCCCCccEEEEEEEecCCc--EEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEecC------CeeEEE
Q 002105          690 SRGKKGVSSSYKVRSLANDM--QFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE------KAAYLV  759 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~--~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~------~~~~lv  759 (966)
                      .+|+|++|.||+|....++.  .+|+|.+...  .....+.+..|+..+.+ ++||||++++++|...      ...++|
T Consensus         6 ~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~~~~~~~v   84 (272)
T cd05075           6 TLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKE-FDHPNVMRLIGVCLQTVESEGYPSPVVI   84 (272)
T ss_pred             ccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHh-CCCCCcceEEEEEccCCcccCCCCcEEE
Confidence            46889999999999866664  5888876532  12223457777777777 6999999999988532      256899


Q ss_pred             EEccCCCCHHHHHH---------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccc
Q 002105          760 YEYIEGKELSEVLR---------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA  830 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~---------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~  830 (966)
                      |||+++|+|.+++.         .++|.....++.|++.||+|||   ..+|+||||||+||+++.+.  .++++|||++
T Consensus        85 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~--~~kl~Dfg~~  159 (272)
T cd05075          85 LPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLS---SKSFIHRDLAARNCMLNENM--NVCVADFGLS  159 (272)
T ss_pred             EEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhheEEcCCC--CEEECCCCcc
Confidence            99999999998873         2689999999999999999999   56899999999999998654  4688999987


Q ss_pred             eecCC--------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCccc
Q 002105          831 YCTDS--------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLD  901 (966)
Q Consensus       831 ~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  901 (966)
                      .....        ...+++.|+|||+..+..++.++|||||||++|||++ |+.||....  .....+...   ..... 
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~--~~~~~~~~~---~~~~~-  233 (272)
T cd05075         160 KKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVE--NSEIYDYLR---QGNRL-  233 (272)
T ss_pred             cccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCC--HHHHHHHHH---cCCCC-
Confidence            64221        1234668999999999999999999999999999999 788886431  111111111   11110 


Q ss_pred             ccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 002105          902 TWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESC  950 (966)
Q Consensus       902 ~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~  950 (966)
                           ......      ...+.+++.+||+.+|++|||+.|+++.|+++
T Consensus       234 -----~~~~~~------~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         234 -----KQPPDC------LDGLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             -----CCCCCC------CHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence                 001111      12466788899999999999999999999873

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=7e-32  Score=296.86  Aligned_cols=245  Identities=18%  Similarity=0.281  Sum_probs=181.5

Q ss_pred             cccCCCCCccEEEEEEEecC--------------CcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEec
Q 002105          688 LTSRGKKGVSSSYKVRSLAN--------------DMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS  752 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~--------------~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~  752 (966)
                      ...+|+||+|.||+++....              ...||+|++.... ......|.+|++.+.+ ++||||+++++++..
T Consensus        10 ~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~-l~h~~i~~~~~~~~~   88 (295)
T cd05097          10 KEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSR-LKNPNIIRLLGVCVS   88 (295)
T ss_pred             hhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHh-CCCCCcCeEEEEEcC
Confidence            34579999999999886432              2358888875432 2223457788888777 799999999999999


Q ss_pred             CCeeEEEEEccCCCCHHHHHHc---------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC
Q 002105          753 EKAAYLVYEYIEGKELSEVLRN---------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK  817 (966)
Q Consensus       753 ~~~~~lv~Ey~~~g~L~~~l~~---------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~  817 (966)
                      ++..++||||+++|+|.+++..               ++|..+.+++.|++.||+|||   ..+++||||||+||+++++
T Consensus        89 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~Nill~~~  165 (295)
T cd05097          89 DDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLA---SLNFVHRDLATRNCLVGNH  165 (295)
T ss_pred             CCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHH---hcCeeccccChhhEEEcCC
Confidence            9999999999999999999842               578889999999999999999   5589999999999999865


Q ss_pred             CCceEEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc--CCCCCCCCCCchhhH
Q 002105          818 DEPHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT--GKSPADADFGVHESI  887 (966)
Q Consensus       818 ~~~~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t--g~~p~~~~~~~~~~~  887 (966)
                      .  .++++|||++....        ....++..|+|||+..+..++.++|||||||++|||+|  |..||.... ..+.+
T Consensus       166 ~--~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~-~~~~~  242 (295)
T cd05097         166 Y--TIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLS-DEQVI  242 (295)
T ss_pred             C--cEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccC-hHHHH
Confidence            4  47889999875321        11234568999999988889999999999999999998  556765421 12222


Q ss_pred             HHHHHHhhcc-CcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          888 VEWARYCYSD-CHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       888 ~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                       +........ .....+..+   ..      ....+.+++.+||+.+|++||+|++|++.|++
T Consensus       243 -~~~~~~~~~~~~~~~~~~~---~~------~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~~  295 (295)
T cd05097         243 -ENTGEFFRNQGRQIYLSQT---PL------CPSPVFKLMMRCWSRDIKDRPTFNKIHHFLRE  295 (295)
T ss_pred             -HHHHHhhhhccccccCCCC---CC------CCHHHHHHHHHHcCCCchhCcCHHHHHHHHhC
Confidence             211111111 000000000   01      11367788999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=4.9e-32  Score=297.96  Aligned_cols=238  Identities=18%  Similarity=0.298  Sum_probs=186.3

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|.|++|.||+++...++..||+|++........+.+..|+..+.+ ++||||+++++++..++..|+||||+++|
T Consensus        23 ~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  101 (296)
T cd06655          23 RYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKE-LKNPNIVNFLDSFLVGDELFVVMEYLAGG  101 (296)
T ss_pred             EEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHh-cCCCceeeeeeeEecCceEEEEEEecCCC
Confidence            34457889999999999888999999999865544444566778777777 79999999999999999999999999999


Q ss_pred             CHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CCCc
Q 002105          767 ELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SKSI  838 (966)
Q Consensus       767 ~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~~~  838 (966)
                      +|.+++..  ++|.++..++.+++.|++|||   +.+++||||||+||+++.+.  .+++.|||.+....      ....
T Consensus       102 ~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH---~~~i~H~dL~p~Nili~~~~--~~kl~dfg~~~~~~~~~~~~~~~~  176 (296)
T cd06655         102 SLTDVVTETCMDEAQIAAVCRECLQALEFLH---ANQVIHRDIKSDNVLLGMDG--SVKLTDFGFCAQITPEQSKRSTMV  176 (296)
T ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCC--CEEEccCccchhcccccccCCCcC
Confidence            99999874  899999999999999999999   55899999999999998654  47889998765321      1235


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      +++.|+|||...+..++.++|||||||++|||+||+.||...... ... ...   .... ......|   ...      
T Consensus       177 ~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~-~~~-~~~---~~~~-~~~~~~~---~~~------  241 (296)
T cd06655         177 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPL-RAL-YLI---ATNG-TPELQNP---EKL------  241 (296)
T ss_pred             CCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHH-HHH---HhcC-CcccCCc---ccC------
Confidence            778999999999888999999999999999999999998754211 111 111   1100 0000011   011      


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ..++.+++.+||+.||++||++.+|+.
T Consensus       242 ~~~~~~li~~~l~~dp~~Rpt~~~il~  268 (296)
T cd06655         242 SPIFRDFLNRCLEMDVEKRGSAKELLQ  268 (296)
T ss_pred             CHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence            124567788999999999999999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=3.8e-32  Score=294.70  Aligned_cols=239  Identities=22%  Similarity=0.386  Sum_probs=182.7

Q ss_pred             cCCCCCccEEEEEEEecCC------cEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          690 SRGKKGVSSSYKVRSLAND------MQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~------~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .+|+|++|.||++......      ..+|+|.+.... .....++.+|+..+.+ ++||||++++++|...+..++||||
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           2 FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSN-FNHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             ccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHh-cCCCCeeeEeeeecCCCCeEEEEec
Confidence            3688999999999875433      578888775432 1234467788877777 6999999999999999999999999


Q ss_pred             cCCCCHHHHHHc----------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC---CceEEEecccc
Q 002105          763 IEGKELSEVLRN----------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD---EPHLRLSVPGL  829 (966)
Q Consensus       763 ~~~g~L~~~l~~----------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~---~~~~~~~~~~~  829 (966)
                      +++|+|.++++.          ++|.++..++.|++.|++|||   +.+++|+||||+||+++.+.   ...+++.|||+
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~  157 (269)
T cd05044          81 MEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLE---QMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGL  157 (269)
T ss_pred             cCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHH---hCCcccCCCChheEEEecCCCCCCcceEECCccc
Confidence            999999999852          678899999999999999999   56899999999999998654   23578999998


Q ss_pred             ceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcc
Q 002105          830 AYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHL  900 (966)
Q Consensus       830 ~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  900 (966)
                      +....        ....++..|+|||++.+..++.++|||||||++|||+| |+.||....  .........   .....
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~--~~~~~~~~~---~~~~~  232 (269)
T cd05044         158 ARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALN--NQEVLQHVT---AGGRL  232 (269)
T ss_pred             ccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccC--HHHHHHHHh---cCCcc
Confidence            75321        12234678999999999999999999999999999998 999986431  111111111   11100


Q ss_pred             cccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          901 DTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       901 ~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                            .....      ....+.+++.+||+.+|.+||++++|.+.|++
T Consensus       233 ------~~~~~------~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  269 (269)
T cd05044         233 ------QKPEN------CPDKIYQLMTNCWAQDPSERPTFDRIQEILQN  269 (269)
T ss_pred             ------CCccc------chHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence                  00011      12356678889999999999999999999863

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=3.3e-32  Score=304.69  Aligned_cols=238  Identities=23%  Similarity=0.300  Sum_probs=178.3

Q ss_pred             cccCCCCCccEEEEEEEe---cCCcEEEEEEEeccCc----ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSL---ANDMQFVVKKIIDVNT----ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~---~~~~~vavk~~~~~~~----~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      ...+|+|++|.||+++..   .++..||+|.+.....    ...+.+..|+..+.++-+||||+++++++..++..++||
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (332)
T cd05614           5 LKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKLHLIL   84 (332)
T ss_pred             EEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEEEEEE
Confidence            455799999999998863   4678999998864321    122345667777766436999999999999999999999


Q ss_pred             EccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----
Q 002105          761 EYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----  833 (966)
Q Consensus       761 Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----  833 (966)
                      ||+++|+|.+++.   .+++.....++.||+.||+|||   +.+|+||||||+|||++.+.  .++++|||++...    
T Consensus        85 e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivHrDlkp~Nili~~~~--~~kl~DfG~~~~~~~~~  159 (332)
T cd05614          85 DYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLH---KLGIVYRDIKLENILLDSEG--HVVLTDFGLSKEFLSEE  159 (332)
T ss_pred             eCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCcEecCCCHHHeEECCCC--CEEEeeCcCCccccccC
Confidence            9999999999985   3889999999999999999999   55899999999999998754  5789999987531    


Q ss_pred             ---CCCCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccccc
Q 002105          834 ---DSKSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       834 ---~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                         .....||+.|||||++.+. .++.++|||||||++|||+||+.||........ ..+.......       .++.+.
T Consensus       160 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~-~~~~~~~~~~-------~~~~~~  231 (332)
T cd05614         160 KERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNT-QSEVSRRILK-------CDPPFP  231 (332)
T ss_pred             CCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCC-HHHHHHHHhc-------CCCCCC
Confidence               1124689999999998765 478899999999999999999999964322111 1111111111       122222


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCC-----CHHHHH
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARP-----CASDVT  944 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RP-----t~~~v~  944 (966)
                      ...+      .++.+++.+|++.||++||     ++++++
T Consensus       232 ~~~~------~~~~~li~~~l~~dp~~R~~~~~~~~~~~l  265 (332)
T cd05614         232 SFIG------PEAQDLLHKLLRKDPKKRLGAGPQGASEIK  265 (332)
T ss_pred             CCCC------HHHHHHHHHHcCCCHHHcCCCCCCCHHHHH
Confidence            2221      2455677899999999999     555665

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=7.7e-32  Score=292.34  Aligned_cols=240  Identities=21%  Similarity=0.293  Sum_probs=171.7

Q ss_pred             cCCCCCccEEEEEEEec--CCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          690 SRGKKGVSSSYKVRSLA--NDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~--~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      .+|+|+||.||+|....  ....+|+|.+..... .....|.+|+..+.+ ++||||++++|+|...+..++||||+++|
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~-l~h~nii~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRE-LNHPNVLQCLGQCIESIPYLLVLEFCPLG   80 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHh-CCCCCcceEEEEECCCCceEEEEEeCCCC
Confidence            36899999999997532  234677776643322 223456777776666 79999999999999999999999999999


Q ss_pred             CHHHHHHc--------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-----
Q 002105          767 ELSEVLRN--------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-----  833 (966)
Q Consensus       767 ~L~~~l~~--------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-----  833 (966)
                      +|.++++.        .++.....++.||+.|++|||   +.+|+||||||+||+++++.  .+++.|||++...     
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~--~~kl~dfg~~~~~~~~~~  155 (269)
T cd05042          81 DLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLH---QADFIHSDLALRNCQLTADL--SVKIGDYGLALEQYPEDY  155 (269)
T ss_pred             cHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHH---hcCEecccccHhheEecCCC--cEEEeccccccccccchh
Confidence            99999863        356778899999999999999   56899999999999999754  4688999987431     


Q ss_pred             ---CCCCcCCcccccccccC-------CCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccc
Q 002105          834 ---DSKSINSSAYVAPETKE-------SKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDT  902 (966)
Q Consensus       834 ---~~~~~~~~~y~aPE~~~-------~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  902 (966)
                         .....+++.|+|||+..       ...++.++|||||||++|||++ |+.||.... ..+.....    ..... ..
T Consensus       156 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~-~~~~~~~~----~~~~~-~~  229 (269)
T cd05042         156 YITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLS-DEQVLKQV----VREQD-IK  229 (269)
T ss_pred             eeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCC-HHHHHHHH----hhccC-cc
Confidence               12223466799999864       3456889999999999999999 778875431 11111111    11111 11


Q ss_pred             cccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          903 WVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       903 ~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                      +.+|.+....+   +   ++.+++..|| .||++|||++||++.|.
T Consensus       230 ~~~~~~~~~~~---~---~~~~~~~~~~-~dp~~Rpt~~~v~~~l~  268 (269)
T cd05042         230 LPKPQLDLKYS---D---RWYEVMQFCW-LDPETRPTAEEVHELLT  268 (269)
T ss_pred             CCCCcccccCC---H---HHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence            12232222222   2   3344566788 59999999999999873

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=1.1e-32  Score=313.97  Aligned_cols=189  Identities=19%  Similarity=0.332  Sum_probs=159.4

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      ..+..+|+|++|.||+++...++..||||.+.....   ...+.+.+|+..+.+ ++|||||++++++.+++..|+||||
T Consensus         4 ~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~-l~h~~iv~~~~~~~~~~~~~lv~E~   82 (376)
T cd05598           4 VKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAE-ADNEWVVKLYYSFQDKDNLYFVMDY   82 (376)
T ss_pred             eEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHh-CCCCCcceEEEEEEcCCEEEEEEeC
Confidence            345567999999999999988999999998854321   122346677777766 7999999999999999999999999


Q ss_pred             cCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------
Q 002105          763 IEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------  833 (966)
Q Consensus       763 ~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------  833 (966)
                      +++|+|.+++..   +++.....++.||+.||+|||   ..+|+||||||+||+++.+.  .++++|||++...      
T Consensus        83 ~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nill~~~~--~ikL~DFG~a~~~~~~~~~  157 (376)
T cd05598          83 IPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVH---KMGFIHRDIKPDNILIDRDG--HIKLTDFGLCTGFRWTHDS  157 (376)
T ss_pred             CCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHEEECCCC--CEEEEeCCCCccccccccc
Confidence            999999999864   678888889999999999999   56899999999999998654  5788999975310      


Q ss_pred             -------------------------------------------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHH
Q 002105          834 -------------------------------------------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDL  870 (966)
Q Consensus       834 -------------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el  870 (966)
                                                                 .....||+.|||||++.+..++.++|||||||++|||
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyel  237 (376)
T cd05598         158 KYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEM  237 (376)
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeeh
Confidence                                                       0123689999999999999999999999999999999


Q ss_pred             HcCCCCCCCC
Q 002105          871 LTGKSPADAD  880 (966)
Q Consensus       871 ~tg~~p~~~~  880 (966)
                      +||+.||...
T Consensus       238 l~G~~Pf~~~  247 (376)
T cd05598         238 LVGQPPFLAD  247 (376)
T ss_pred             hhCCCCCCCC
Confidence            9999999754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=1.4e-31  Score=286.97  Aligned_cols=234  Identities=21%  Similarity=0.338  Sum_probs=182.2

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCHH
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS  769 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L~  769 (966)
                      +|.||+|.||++.. .++..+|+|++..... .....+.+|+..+.+ ++||||++++++|...+..++||||+++|+|.
T Consensus         3 ig~g~~g~vy~~~~-~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   80 (250)
T cd05085           3 LGKGNFGEVFKGTL-KDKTPVAVKTCKEDLPQELKIKFLSEARILKQ-YDHPNIVKLIGVCTQRQPIYIVMELVPGGDFL   80 (250)
T ss_pred             cCCCCCceEEEEEe-cCCcEEEEEecCCcCCHHHHHHHHHHHHHHHh-CCCCCcCeEEEEEecCCccEEEEECCCCCcHH
Confidence            58899999999986 6788999998754322 223357788887777 69999999999999999999999999999999


Q ss_pred             HHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-------CCc
Q 002105          770 EVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-------KSI  838 (966)
Q Consensus       770 ~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-------~~~  838 (966)
                      +++..    ++|..+..++.+++.||.|+|   ..+++||||||+||+++.+.  .+++.|+|++.....       ...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~~~H~dl~p~nili~~~~--~~~l~d~g~~~~~~~~~~~~~~~~~  155 (250)
T cd05085          81 SFLRKKKDELKTKQLVKFALDAAAGMAYLE---SKNCIHRDLAARNCLVGENN--VLKISDFGMSRQEDDGIYSSSGLKQ  155 (250)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccChheEEEcCCC--eEEECCCccceeccccccccCCCCC
Confidence            99863    789999999999999999999   56999999999999998654  578899998754221       112


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      ++..|+|||+..+..++.++|||||||++||+++ |..||.....  ........   .....      .....      
T Consensus       156 ~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~--~~~~~~~~---~~~~~------~~~~~------  218 (250)
T cd05085         156 IPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTN--QQAREQVE---KGYRM------SCPQK------  218 (250)
T ss_pred             CcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCH--HHHHHHHH---cCCCC------CCCCC------
Confidence            3557999999998899999999999999999999 9999864311  11111111   11000      00111      


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                      ...++.+++.+|++.+|++||++.|++++|.
T Consensus       219 ~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         219 CPDDVYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             CCHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence            1235677889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.5e-31  Score=288.03  Aligned_cols=236  Identities=22%  Similarity=0.346  Sum_probs=181.7

Q ss_pred             cCCCCCccEEEEEEEecCC---cEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          690 SRGKKGVSSSYKVRSLAND---MQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~---~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .+|+|++|.||+|.....+   ..+|+|.+..... ...+++..|+..+.+ +.|||||++++++.. +..++||||+++
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05060           2 ELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQ-LDHPCIVRLIGVCKG-EPLMLVMELAPL   79 (257)
T ss_pred             ccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHh-cCCCCeeeEEEEEcC-CceEEEEEeCCC
Confidence            4688999999999765544   6899998764432 234467788877777 699999999998864 567999999999


Q ss_pred             CCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-------
Q 002105          766 KELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-------  835 (966)
Q Consensus       766 g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-------  835 (966)
                      |+|.++++.   ++|..+..++.|++.|++|||   ..+++||||||+||+++.+.  .++++|||.+.....       
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lh---~~~i~H~di~p~nili~~~~--~~kl~df~~~~~~~~~~~~~~~  154 (257)
T cd05060          80 GPLLKYLKKRREIPVSDLKELAHQVAMGMAYLE---SKHFVHRDLAARNVLLVNRH--QAKISDFGMSRALGAGSDYYRA  154 (257)
T ss_pred             CcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh---hcCeeccCcccceEEEcCCC--cEEeccccccceeecCCccccc
Confidence            999999963   889999999999999999999   55899999999999998654  578889988653211       


Q ss_pred             --CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          836 --KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       836 --~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                        ...++..|+|||...+..++.++|||||||++||++| |+.||.....  ..+.++...   ....     + .....
T Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~--~~~~~~~~~---~~~~-----~-~~~~~  223 (257)
T cd05060         155 TTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKG--AEVIAMLES---GERL-----P-RPEEC  223 (257)
T ss_pred             ccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCH--HHHHHHHHc---CCcC-----C-CCCCC
Confidence              1112457999999998899999999999999999998 9999865321  122222221   1000     0 01111


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                            ..++.+++.+|++.+|++||++.+|++.|++
T Consensus       224 ------~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~  254 (257)
T cd05060         224 ------PQEIYSIMLSCWKYRPEDRPTFSELESTFRR  254 (257)
T ss_pred             ------CHHHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence                  1356678899999999999999999999987

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=4e-34  Score=285.51  Aligned_cols=235  Identities=19%  Similarity=0.271  Sum_probs=186.2

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +...|+|.+|+||||.+...|..+|+|++.-..  +-++...|+..+.+ +..|+||++||.|.....+|||||||..|+
T Consensus        38 ~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~s--DLQEIIKEISIMQQ-C~S~yVVKYYGSYFK~sDLWIVMEYCGAGS  114 (502)
T KOG0574|consen   38 VGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDT--DLQEIIKEISIMQQ-CKSKYVVKYYGSYFKHSDLWIVMEYCGAGS  114 (502)
T ss_pred             HHHhcCCcchHHHHHHHhccCcEEEEEecCccc--hHHHHHHHHHHHHH-cCCchhhhhhhhhccCCceEeehhhcCCCc
Confidence            456799999999999999999999999985322  33567788877766 899999999999999999999999999999


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCCC
Q 002105          768 LSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSKS  837 (966)
Q Consensus       768 L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~~  837 (966)
                      ..+.++    .+...+...+.....+||+|||..   .-||||||+.|||++.++.  .|+.|||++...      ...+
T Consensus       115 iSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~---~KIHRDIKAGNILLNT~G~--AKLADFGVAGQLTDTMAKRNTV  189 (502)
T KOG0574|consen  115 ISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDL---KKIHRDIKAGNILLNTDGI--AKLADFGVAGQLTDTMAKRNTV  189 (502)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHH---HHHHhhcccccEEEcccch--hhhhhccccchhhhhHHhhCcc
Confidence            999986    488889999999999999999954   6799999999999986654  477888887542      2346


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      +|||.|||||+++.-.|+.++||||+|++..||+.|++||..-......        +   ....-..|..    ...+.
T Consensus       190 IGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRAI--------F---MIPT~PPPTF----~KPE~  254 (502)
T KOG0574|consen  190 IGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRAI--------F---MIPTKPPPTF----KKPEE  254 (502)
T ss_pred             ccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCccccccccee--------E---eccCCCCCCC----CChHh
Confidence            8999999999999999999999999999999999999998642111100        0   0000012222    22234


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .-.++-+.+..|+.+.|++|-|+.++++
T Consensus       255 WS~~F~DFi~~CLiK~PE~R~TA~~L~~  282 (502)
T KOG0574|consen  255 WSSEFNDFIRSCLIKKPEERKTALRLCE  282 (502)
T ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHhh
Confidence            4456667788999999999999877654

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=1.4e-31  Score=288.65  Aligned_cols=236  Identities=21%  Similarity=0.327  Sum_probs=182.2

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|+||+|.||+|.. ..+..+|+|++.... ...++|.+|+..+.+ ++||||+++++++. ++..++||||+++|+
T Consensus        11 ~~~ig~g~~~~v~~~~~-~~~~~~~~k~~~~~~-~~~~~~~~E~~~l~~-l~~~~i~~~~~~~~-~~~~~lv~e~~~~~~   86 (260)
T cd05070          11 IKKLGNGQFGEVWMGTW-NGNTKVAVKTLKPGT-MSPESFLEEAQIMKK-LRHDKLVQLYAVVS-EEPIYIVTEYMSKGS   86 (260)
T ss_pred             hheeccccCceEEEEEe-cCCceeEEEEecCCC-CCHHHHHHHHHHHHh-cCCCceEEEEeEEC-CCCcEEEEEecCCCc
Confidence            44578999999999986 577789999876433 234567888887777 69999999999885 456899999999999


Q ss_pred             HHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-------
Q 002105          768 LSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-------  835 (966)
Q Consensus       768 L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-------  835 (966)
                      |.++++.     +++.++.+++.+++.||+|||   ..+|+||||||+||+++++  ..+++.|+|.+.....       
T Consensus        87 L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~di~p~Nili~~~--~~~~l~dfg~~~~~~~~~~~~~~  161 (260)
T cd05070          87 LLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIE---RMNYIHRDLRSANILVGDG--LVCKIADFGLARLIEDNEYTARQ  161 (260)
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEEeCC--ceEEeCCceeeeeccCccccccc
Confidence            9999863     789999999999999999999   4589999999999999864  4578899998754211       


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ...++..|+|||+..+..++.++|||||||++|||++ |+.||.... ..+.. ++..   ....      +....    
T Consensus       162 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~-~~~~~-~~~~---~~~~------~~~~~----  226 (260)
T cd05070         162 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMN-NREVL-EQVE---RGYR------MPCPQ----  226 (260)
T ss_pred             CCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCC-HHHHH-HHHH---cCCC------CCCCC----
Confidence            1223457999999988889999999999999999999 888986532 11111 2111   1100      00111    


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                        ....++.+++.+|++.+|++||||+++.+.|+.
T Consensus       227 --~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         227 --DCPISLHELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             --cCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence              112357778899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=2.1e-32  Score=309.62  Aligned_cols=189  Identities=22%  Similarity=0.414  Sum_probs=156.1

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--c-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--I-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|++|.||+++...++..+|+|.+.....  . ..+.+.+|+ .+.+.++|||||++++++..++..|+||||
T Consensus        46 ~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~-~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey  124 (370)
T cd05621          46 DVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEER-DIMAFANSPWVVQLFCAFQDDKYLYMVMEY  124 (370)
T ss_pred             eEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHH-HHHHhCCCCCEeeEEEEEEcCCEEEEEEcC
Confidence            344557999999999999988899999998864321  1 122244444 444558999999999999999999999999


Q ss_pred             cCCCCHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          763 IEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       763 ~~~g~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      |++|+|.++++.  +++.....++.||+.||+|||   +.+|+||||||+|||++.+.  .++++|||++....      
T Consensus       125 ~~gg~L~~~l~~~~~~~~~~~~~~~qil~aL~~LH---~~~IvHrDLKp~NILl~~~~--~~kL~DFG~a~~~~~~~~~~  199 (370)
T cd05621         125 MPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIH---SMGLIHRDVKPDNMLLDKHG--HLKLADFGTCMKMDETGMVR  199 (370)
T ss_pred             CCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEECCCC--CEEEEecccceecccCCcee
Confidence            999999999964  778888899999999999999   56999999999999998654  57899999876432      


Q ss_pred             -CCCcCCcccccccccCCC----CCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          835 -SKSINSSAYVAPETKESK----DITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~----~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                       ....||+.|||||++.+.    .++.++||||+||++|||+||+.||...
T Consensus       200 ~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~  250 (370)
T cd05621         200 CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYAD  250 (370)
T ss_pred             cccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCC
Confidence             234689999999988654    3788999999999999999999999754

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=3.9e-32  Score=314.12  Aligned_cols=247  Identities=17%  Similarity=0.205  Sum_probs=175.8

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecC--------CeeE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--------KAAY  757 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--------~~~~  757 (966)
                      .....+|+|+||.||+|+...++..||||++....    ....+|+..+.+ ++|||||++++++...        ...+
T Consensus        69 ~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~-l~h~niv~l~~~~~~~~~~~~~~~~~l~  143 (440)
T PTZ00036         69 KLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP----QYKNRELLIMKN-LNHINIIFLKDYYYTECFKKNEKNIFLN  143 (440)
T ss_pred             EEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHh-cCCCCCcceeeeEeecccccCCCceEEE
Confidence            44556799999999999998899999999885422    223456666666 7999999999987432        2467


Q ss_pred             EEEEccCCCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccc
Q 002105          758 LVYEYIEGKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA  830 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~  830 (966)
                      +||||+++ ++.+++.       .+++.....++.||++||+|||   +.+|+||||||+|||++.+. ..++++|||++
T Consensus       144 lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH---~~~IiHrDLKp~NILl~~~~-~~vkL~DFGla  218 (440)
T PTZ00036        144 VVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIH---SKFICHRDLKPQNLLIDPNT-HTLKLCDFGSA  218 (440)
T ss_pred             EEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCcCHHHEEEcCCC-Cceeeeccccc
Confidence            99999985 6776663       3788899999999999999999   56899999999999998543 34789999998


Q ss_pred             eecC-----CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcc----
Q 002105          831 YCTD-----SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHL----  900 (966)
Q Consensus       831 ~~~~-----~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~----  900 (966)
                      ....     ....+|+.|||||++.+ ..|+.++|||||||++|||+||++||.+.... +.+...... ......    
T Consensus       219 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~-~~~~~i~~~-~~~p~~~~~~  296 (440)
T PTZ00036        219 KNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSV-DQLVRIIQV-LGTPTEDQLK  296 (440)
T ss_pred             hhccCCCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHHH-hCCCCHHHHH
Confidence            6421     23467899999998765 46899999999999999999999999764321 111111111 000000    


Q ss_pred             ---cccccccccCCC-cchH-----HHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 002105          901 ---DTWVDPFIRGHV-SSIQ-----NEIVEIMNLALHCTAGDPTARPCASDVT  944 (966)
Q Consensus       901 ---~~~~d~~~~~~~-~~~~-----~~~~~~~~l~~~C~~~~P~~RPt~~~v~  944 (966)
                         ..+.+....... ....     ....++.+++.+|++.||.+|||+.|++
T Consensus       297 ~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l  349 (440)
T PTZ00036        297 EMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEAL  349 (440)
T ss_pred             HhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHh
Confidence               000000000000 0000     0123577888999999999999999987

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=1.1e-31  Score=298.03  Aligned_cols=244  Identities=22%  Similarity=0.351  Sum_probs=183.9

Q ss_pred             cccCCCCCccEEEEEEEe-------cCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          688 LTSRGKKGVSSSYKVRSL-------ANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~-------~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      ...+|+|++|.||+++..       .....+|+|++..... ....++..|+..+.++.+|||||+++++|..++..++|
T Consensus        17 ~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv   96 (314)
T cd05099          17 GKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEGPLYVI   96 (314)
T ss_pred             eeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCCceEEE
Confidence            345789999999999753       2344688887654322 22345677877776643799999999999999999999


Q ss_pred             EEccCCCCHHHHHHc-------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCc
Q 002105          760 YEYIEGKELSEVLRN-------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEP  820 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~-------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~  820 (966)
                      |||+++|+|.++++.                   ++|.+..+++.|++.||+|||   ..+|+||||||+||+++.+.  
T Consensus        97 ~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~gi~H~dlkp~Nill~~~~--  171 (314)
T cd05099          97 VEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLE---SRRCIHRDLAARNVLVTEDN--  171 (314)
T ss_pred             EecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeeccccceeEEEcCCC--
Confidence            999999999999852                   788899999999999999999   55999999999999998654  


Q ss_pred             eEEEeccccceecCC--------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHH
Q 002105          821 HLRLSVPGLAYCTDS--------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWA  891 (966)
Q Consensus       821 ~~~~~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~  891 (966)
                      .++++|||.+.....        ...++..|||||++.+..++.++|||||||++|||++ |..||....  .+...+..
T Consensus       172 ~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~--~~~~~~~~  249 (314)
T cd05099         172 VMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIP--VEELFKLL  249 (314)
T ss_pred             cEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCC--HHHHHHHH
Confidence            578899998754211        1123457999999988899999999999999999999 888886431  11111221


Q ss_pred             HHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          892 RYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       892 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      .   .....      ......      ..++.+++.+|++.+|++|||+.|+++.|+++...
T Consensus       250 ~---~~~~~------~~~~~~------~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~~~  296 (314)
T cd05099         250 R---EGHRM------DKPSNC------THELYMLMRECWHAVPTQRPTFKQLVEALDKVLAA  296 (314)
T ss_pred             H---cCCCC------CCCCCC------CHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHH
Confidence            1   11000      001111      12566788999999999999999999999985543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.9e-33  Score=298.97  Aligned_cols=242  Identities=21%  Similarity=0.351  Sum_probs=192.4

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCH
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL  768 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L  768 (966)
                      ...|+|.+|.||.|++++....||||.+.. +....++|..|...+.. ++|||+|+++|+|..+...|||.|||..|+|
T Consensus       273 hKLGGGQYGeVYeGvWKkyslTvAVKtLKE-DtMeveEFLkEAAvMKe-ikHpNLVqLLGVCT~EpPFYIiTEfM~yGNL  350 (1157)
T KOG4278|consen  273 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKE-IKHPNLVQLLGVCTHEPPFYIITEFMCYGNL  350 (1157)
T ss_pred             eccCCCcccceeeeeeeccceeeehhhhhh-cchhHHHHHHHHHHHHh-hcCccHHHHhhhhccCCCeEEEEecccCccH
Confidence            457889999999999999999999998754 44556789988776655 8999999999999999999999999999999


Q ss_pred             HHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC----CCcC
Q 002105          769 SEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS----KSIN  839 (966)
Q Consensus       769 ~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~----~~~~  839 (966)
                      .+||+.     ++--..+.+|.||+.||+||.   ....||||+.+.|+|+.++  ..+|+.|||++..+..    ...|
T Consensus       351 LdYLRecnr~ev~avvLlyMAtQIsSaMeYLE---kknFIHRDLAARNCLVgEn--hiVKvADFGLsRlMtgDTYTAHAG  425 (1157)
T KOG4278|consen  351 LDYLRECNRSEVPAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGEN--HIVKVADFGLSRLMTGDTYTAHAG  425 (1157)
T ss_pred             HHHHHHhchhhcchhHHHHHHHHHHHHHHHHH---Hhhhhhhhhhhhhcccccc--ceEEeeccchhhhhcCCceecccC
Confidence            999984     455566789999999999999   5689999999999999865  4578999999875332    1222


Q ss_pred             ---CcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          840 ---SSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       840 ---~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                         ...|.|||.+....++.|+|||+|||+|||++| |..||.+-  +...+.+.....+   +++.            .
T Consensus       426 AKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGi--dlSqVY~LLEkgy---RM~~------------P  488 (1157)
T KOG4278|consen  426 AKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGI--DLSQVYGLLEKGY---RMDG------------P  488 (1157)
T ss_pred             ccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCc--cHHHHHHHHhccc---cccC------------C
Confidence               357999999999999999999999999999988 88998653  1112222221111   1110            0


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS  954 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~  954 (966)
                      +.+...+.++|..||+-+|.+||+++|+-+.+|.++..+
T Consensus       489 eGCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtmf~~s  527 (1157)
T KOG4278|consen  489 EGCPPKVYELMRACWNWSPSDRPSFAEIHQAFETMFSSS  527 (1157)
T ss_pred             CCCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhccc
Confidence            123346788999999999999999999999999866543

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.98  E-value=1.4e-31  Score=296.10  Aligned_cols=188  Identities=20%  Similarity=0.327  Sum_probs=158.3

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ....+|+|++|.||+++...++..+|+|.+..... ....++.+|++.+.+ ++|||||+++++|..++..++||||+++
T Consensus         5 ~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~ey~~~   83 (308)
T cd06615           5 KLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHE-CNSPYIVGFYGAFYSDGEISICMEHMDG   83 (308)
T ss_pred             EEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHh-CCCCCCCeEEEEEeeCCEEEEEeeccCC
Confidence            34457899999999999988888888887753321 223457778887777 6999999999999999999999999999


Q ss_pred             CCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----CCCCc
Q 002105          766 KELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----DSKSI  838 (966)
Q Consensus       766 g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----~~~~~  838 (966)
                      |+|.++++.   +++.....++.|+++||+|||+.  .+++||||||+||+++.+.  .+++.|||.+...    .....
T Consensus        84 ~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~--~~i~H~dl~p~nil~~~~~--~~~l~dfg~~~~~~~~~~~~~~  159 (308)
T cd06615          84 GSLDQVLKKAGRIPENILGKISIAVLRGLTYLREK--HKIMHRDVKPSNILVNSRG--EIKLCDFGVSGQLIDSMANSFV  159 (308)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhh--CCEEECCCChHHEEEecCC--cEEEccCCCcccccccccccCC
Confidence            999999963   78899999999999999999952  4799999999999998754  4688899876532    22346


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCC
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADA  879 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~  879 (966)
                      ++..|+|||...+..++.++|||||||++|||+||+.||..
T Consensus       160 ~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~  200 (308)
T cd06615         160 GTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPP  200 (308)
T ss_pred             CCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCC
Confidence            78899999999888899999999999999999999999864

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=1.6e-32  Score=312.60  Aligned_cols=187  Identities=19%  Similarity=0.301  Sum_probs=158.1

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      +..+|.|++|.||+++...++..||||++.....   ...+.+..|+..+.+ ++|||||++++++.+++..|+||||++
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~-l~hp~iv~~~~~~~~~~~~~lv~E~~~   84 (377)
T cd05629           6 VKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAE-SDSPWVVSLYYSFQDAQYLYLIMEFLP   84 (377)
T ss_pred             eEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHh-CCCCCcceEEEEEEcCCeeEEEEeCCC
Confidence            4567999999999999989999999999864321   122345667766666 799999999999999999999999999


Q ss_pred             CCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-------
Q 002105          765 GKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------  834 (966)
Q Consensus       765 ~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-------  834 (966)
                      +|+|.+++..   +++.....++.|++.||+|||   +.+|+||||||+|||++.+.  .++++|||++....       
T Consensus        85 gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH---~~givHrDlkp~NIll~~~~--~~kl~DfGla~~~~~~~~~~~  159 (377)
T cd05629          85 GGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVH---KLGFIHRDIKPDNILIDRGG--HIKLSDFGLSTGFHKQHDSAY  159 (377)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEECCCC--CEEEeeccccccccccccccc
Confidence            9999999863   788888899999999999999   56999999999999998654  57889999763100       


Q ss_pred             ----------------------------------------------CCCcCCcccccccccCCCCCCCcchHHHHHHHHH
Q 002105          835 ----------------------------------------------SKSINSSAYVAPETKESKDITEKGDIYGFGLILI  868 (966)
Q Consensus       835 ----------------------------------------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~  868 (966)
                                                                    ...+||+.|+|||++.+..++.++|||||||++|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~  239 (377)
T cd05629         160 YQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMF  239 (377)
T ss_pred             ccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhh
Confidence                                                          0135899999999999999999999999999999


Q ss_pred             HHHcCCCCCCCC
Q 002105          869 DLLTGKSPADAD  880 (966)
Q Consensus       869 el~tg~~p~~~~  880 (966)
                      ||+||+.||...
T Consensus       240 elltG~~Pf~~~  251 (377)
T cd05629         240 ECLIGWPPFCSE  251 (377)
T ss_pred             hhhcCCCCCCCC
Confidence            999999999754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.98  E-value=1.2e-31  Score=292.97  Aligned_cols=236  Identities=18%  Similarity=0.288  Sum_probs=182.0

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCH
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL  768 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L  768 (966)
                      ..+|.|++|.||++....++..+|+|++........+.+..|+..+.+ ++||||++++++|..++..|+||||+++|+|
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~-l~h~~ii~~~~~~~~~~~~~~v~e~~~~~~l   89 (282)
T cd06643          11 GELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILAS-CDHPNIVKLLDAFYYENNLWILIEFCAGGAV   89 (282)
T ss_pred             hhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHH-CCCCCeeeEEEEEeeCCEEEEEEEecCCCcH
Confidence            447889999999999988888888888755443344567788887777 6999999999999999999999999999999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CCCc
Q 002105          769 SEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SKSI  838 (966)
Q Consensus       769 ~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~~~  838 (966)
                      ..++.    .++|..+..++.|+++||+|||   +.+|+||||||+||+++.+.  .++++|||++....      ....
T Consensus        90 ~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH---~~~i~H~dlkp~nili~~~~--~~kl~dfg~~~~~~~~~~~~~~~~  164 (282)
T cd06643          90 DAVMLELERPLTEPQIRVVCKQTLEALNYLH---ENKIIHRDLKAGNILFTLDG--DIKLADFGVSAKNTRTIQRRDSFI  164 (282)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEccCC--CEEEcccccccccccccccccccc
Confidence            98875    3789999999999999999999   56999999999999998654  47889999874321      2245


Q ss_pred             CCcccccccccC-----CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          839 NSSAYVAPETKE-----SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       839 ~~~~y~aPE~~~-----~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      +++.|+|||++.     +..++.++|||||||++|||++|+.||.... ..+.+......    .. .....|   ..+ 
T Consensus       165 ~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~-~~~~~~~~~~~----~~-~~~~~~---~~~-  234 (282)
T cd06643         165 GTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELN-PMRVLLKIAKS----EP-PTLAQP---SRW-  234 (282)
T ss_pred             ccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccC-HHHHHHHHhhc----CC-CCCCCc---ccc-
Confidence            788999999873     4557889999999999999999999986432 11111121110    00 000011   111 


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                           ..++.+++.+||+.+|.+||++.++++
T Consensus       235 -----~~~~~~li~~~l~~~p~~Rp~~~~il~  261 (282)
T cd06643         235 -----SSEFKDFLKKCLEKNVDARWTTTQLLQ  261 (282)
T ss_pred             -----CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                 124667788999999999999998874

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.98  E-value=6.8e-32  Score=294.12  Aligned_cols=234  Identities=20%  Similarity=0.292  Sum_probs=183.4

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ..+|+|++|.||+|....++..||+|.+.... ....+.+..|+..+.+ ++||||+++++++..++..|+||||+++|+
T Consensus        10 ~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   88 (277)
T cd06642          10 ERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQ-CDSPYITRYYGSYLKGTKLWIIMEYLGGGS   88 (277)
T ss_pred             HHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHc-CCCCccHhhhcccccCCceEEEEEccCCCc
Confidence            34688999999999987888899999875332 2223457778887777 699999999999999999999999999999


Q ss_pred             HHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC------CCcC
Q 002105          768 LSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS------KSIN  839 (966)
Q Consensus       768 L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~------~~~~  839 (966)
                      |.++++.  +++.....++.|+++|++|||   ..+++|+||||+||+++.+.  .+++.|||.+.....      ...+
T Consensus        89 L~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~ivH~dl~p~ni~i~~~~--~~~l~dfg~~~~~~~~~~~~~~~~~  163 (277)
T cd06642          89 ALDLLKPGPLEETYIATILREILKGLDYLH---SERKIHRDIKAANVLLSEQG--DVKLADFGVAGQLTDTQIKRNTFVG  163 (277)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHHHh---cCCeeccCCChheEEEeCCC--CEEEccccccccccCcchhhhcccC
Confidence            9999864  789999999999999999999   56999999999999998654  468889988754221      2346


Q ss_pred             CcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHH
Q 002105          840 SSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEI  919 (966)
Q Consensus       840 ~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  919 (966)
                      +..|+|||+..+..++.++|||||||++|||+||+.|+...... ... .+    ....     ..+.+.+      ...
T Consensus       164 ~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~-~~~-~~----~~~~-----~~~~~~~------~~~  226 (277)
T cd06642         164 TPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPM-RVL-FL----IPKN-----SPPTLEG------QYS  226 (277)
T ss_pred             cccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchh-hHH-hh----hhcC-----CCCCCCc------ccC
Confidence            78899999999989999999999999999999999998643211 110 11    1100     1111111      122


Q ss_pred             HHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          920 VEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       920 ~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .++.+++.+||+.+|++||+|.||+.
T Consensus       227 ~~~~~li~~~l~~~p~~Rp~~~~il~  252 (277)
T cd06642         227 KPFKEFVEACLNKDPRFRPTAKELLK  252 (277)
T ss_pred             HHHHHHHHHHccCCcccCcCHHHHHH
Confidence            35677889999999999999999987

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.98  E-value=6.7e-32  Score=293.26  Aligned_cols=235  Identities=17%  Similarity=0.241  Sum_probs=179.5

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecC------CeeEEEEEc
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE------KAAYLVYEY  762 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~------~~~~lv~Ey  762 (966)
                      ..+|+|++|.||+|+...++..||+|++.... .....+..|+..+.++.+||||+++++++...      ...|+||||
T Consensus        12 ~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~   90 (272)
T cd06637          12 ELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEF   90 (272)
T ss_pred             HheeecCCeEEEEEEEcCCCcEEEEEEEEcCC-ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcEEEEEEEc
Confidence            34688999999999998889999999875432 33456788888887755799999999998753      468999999


Q ss_pred             cCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---
Q 002105          763 IEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       763 ~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---  834 (966)
                      +++|+|.++++.     ++|.....++.|++.|++|||   ..+|+||||||+||+++++.  .+++.|||++....   
T Consensus        91 ~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH---~~~ivh~dl~~~nili~~~~--~~~l~Dfg~~~~~~~~~  165 (272)
T cd06637          91 CGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENA--EVKLVDFGVSAQLDRTV  165 (272)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHEEECCCC--CEEEccCCCceeccccc
Confidence            999999999863     789999999999999999999   45899999999999999654  47889999875421   


Q ss_pred             ---CCCcCCcccccccccC-----CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccc
Q 002105          835 ---SKSINSSAYVAPETKE-----SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDP  906 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  906 (966)
                         ....|++.|+|||++.     ...++.++|||||||++|||++|+.|+..... ..   .+... ... ....    
T Consensus       166 ~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~-~~---~~~~~-~~~-~~~~----  235 (272)
T cd06637         166 GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHP-MR---ALFLI-PRN-PAPR----  235 (272)
T ss_pred             ccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCH-HH---HHHHH-hcC-CCCC----
Confidence               2245788999999875     34688899999999999999999999864311 11   11110 000 0000    


Q ss_pred             cccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          907 FIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       907 ~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ......      ..++.+++.+||+.+|.+|||+.||++
T Consensus       236 ~~~~~~------~~~~~~li~~~l~~~p~~Rpt~~~il~  268 (272)
T cd06637         236 LKSKKW------SKKFQSFIESCLVKNHSQRPTTEQLMK  268 (272)
T ss_pred             CCCCCc------CHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence            001111      124667888999999999999999875

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.98  E-value=1.4e-32  Score=307.42  Aligned_cols=237  Identities=18%  Similarity=0.220  Sum_probs=177.9

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ...+|+|++|.||+++...++..||+|++.....   ...+.+..|+.. .+.++||||+++++++.+++..|+||||++
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i-~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   84 (330)
T cd05601           6 KSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDI-LSISNSPWIPQLQYAFQDKDNLYLVMEYQP   84 (330)
T ss_pred             EEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHH-HHhCCCCCCcceeeEEecCCeEEEEECCCC
Confidence            4457899999999999988999999999865322   122234445444 444799999999999999999999999999


Q ss_pred             CCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          765 GKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       765 ~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      +|+|.++++    .+++.....++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||++....      
T Consensus        85 ~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~~i~H~Dlkp~NIll~~~~--~~kL~Dfg~a~~~~~~~~~~  159 (330)
T cd05601          85 GGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVH---QMGYVHRDIKPENVLIDRTG--HIKLADFGSAARLTANKMVN  159 (330)
T ss_pred             CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEcccCchHheEECCCC--CEEeccCCCCeECCCCCcee
Confidence            999999985    3788999999999999999999   56999999999999999654  57899999876422      


Q ss_pred             -CCCcCCcccccccccC------CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccc
Q 002105          835 -SKSINSSAYVAPETKE------SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF  907 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~------~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  907 (966)
                       ....||+.|+|||++.      ...++.++|||||||++|||+||+.||..... .    +.............+.+  
T Consensus       160 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~-~----~~~~~i~~~~~~~~~~~--  232 (330)
T cd05601         160 SKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTS-A----KTYNNIMNFQRFLKFPE--  232 (330)
T ss_pred             eecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCH-H----HHHHHHHcCCCccCCCC--
Confidence             1236889999999876      45678999999999999999999999975421 1    11111111111001000  


Q ss_pred             ccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       908 ~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                          ......   ++.+++..|++ +|++||++.+++.
T Consensus       233 ----~~~~~~---~~~~li~~ll~-~p~~R~t~~~l~~  262 (330)
T cd05601         233 ----DPKVSS---DFLDLIQSLLC-GQKERLGYEGLCC  262 (330)
T ss_pred             ----CCCCCH---HHHHHHHHHcc-ChhhCCCHHHHhC
Confidence                011122   34556667887 9999999999873

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.98  E-value=6.9e-32  Score=295.04  Aligned_cols=244  Identities=20%  Similarity=0.308  Sum_probs=186.3

Q ss_pred             cccCCCCCccEEEEEEEec----CCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEec--CCeeEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLA----NDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRS--EKAAYLVY  760 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~----~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~--~~~~~lv~  760 (966)
                      ...+|+|++|.||+++...    ++..+|||++...... ..+.|..|+..+.+ ++||||+++++++..  +...++||
T Consensus         9 ~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~-l~~~~i~~~~~~~~~~~~~~~~lv~   87 (284)
T cd05038           9 IKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRT-LDHENIVKYKGVCEKPGGRSLRLIM   87 (284)
T ss_pred             heeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHh-CCCCChheEEeeeecCCCCceEEEE
Confidence            4557899999999998643    3788999988654332 34568888888877 699999999999987  56789999


Q ss_pred             EccCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-
Q 002105          761 EYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-  835 (966)
Q Consensus       761 Ey~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-  835 (966)
                      ||+++|+|.+++..    ++|..+..++.|++.||+|||   ..+++||||||+||+++.+  ..++++|+|.+..... 
T Consensus        88 e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~~~  162 (284)
T cd05038          88 EYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLG---SQRYIHRDLAARNILVESE--DLVKISDFGLAKVLPED  162 (284)
T ss_pred             ecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHhEEEcCC--CCEEEcccccccccccC
Confidence            99999999999963    899999999999999999999   5589999999999999976  4578899988754321 


Q ss_pred             --------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchh----------hHHHHHHHhhcc
Q 002105          836 --------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHE----------SIVEWARYCYSD  897 (966)
Q Consensus       836 --------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~----------~~~~~~~~~~~~  897 (966)
                              ...++..|+|||+..+..++.++||||||+++|||+||+.|+........          ....+.......
T Consensus       163 ~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (284)
T cd05038         163 KDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEG  242 (284)
T ss_pred             CcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHcC
Confidence                    11234569999999888999999999999999999999999764321110          010111110000


Q ss_pred             CcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          898 CHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       898 ~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      ...   ..   .      .....++.+++.+|++.+|++||||.||+++|+.
T Consensus       243 ~~~---~~---~------~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~  282 (284)
T cd05038         243 ERL---PR---P------PSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDR  282 (284)
T ss_pred             CcC---CC---C------ccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhh
Confidence            000   00   0      1112467788999999999999999999999987

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.98  E-value=1.4e-31  Score=291.65  Aligned_cols=239  Identities=18%  Similarity=0.324  Sum_probs=184.3

Q ss_pred             cccCCCCCccEEEEEEEecC-----CcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLAN-----DMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~-----~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ...+|+|++|.||++.....     +..||+|.+..... .....+..|+..+.+ ++||||++++|++..++..++|||
T Consensus        11 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~-~~~~~i~~~~~~~~~~~~~~~v~e   89 (277)
T cd05032          11 IRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKE-FNCHHVVRLLGVVSTGQPTLVVME   89 (277)
T ss_pred             EeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHh-CCCCceeEEEEEEcCCCCcEEEEe
Confidence            34578999999999987543     37899998754322 223457777777776 699999999999999999999999


Q ss_pred             ccCCCCHHHHHHc-------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccc
Q 002105          762 YIEGKELSEVLRN-------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPG  828 (966)
Q Consensus       762 y~~~g~L~~~l~~-------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~  828 (966)
                      |+++|+|.++++.             ++|.....++.|++.||+|||   ..+|+||||||+||+++.+.  .++++|||
T Consensus        90 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~di~p~nill~~~~--~~kl~dfg  164 (277)
T cd05032          90 LMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLA---AKKFVHRDLAARNCMVAEDL--TVKIGDFG  164 (277)
T ss_pred             cCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccChheEEEcCCC--CEEECCcc
Confidence            9999999999852             578889999999999999999   56999999999999999765  46888998


Q ss_pred             cceec--------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCc
Q 002105          829 LAYCT--------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCH  899 (966)
Q Consensus       829 ~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~  899 (966)
                      .+...        .....++..|+|||......++.++|||||||++||++| |+.||....  .+...++..   ....
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~--~~~~~~~~~---~~~~  239 (277)
T cd05032         165 MTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLS--NEEVLKFVI---DGGH  239 (277)
T ss_pred             cchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCC--HHHHHHHHh---cCCC
Confidence            76431        122345678999999988889999999999999999998 899986431  222222221   1110


Q ss_pred             ccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          900 LDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       900 ~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      .      ......      ..++.+++.+||+.+|++|||+.|+++.|++
T Consensus       240 ~------~~~~~~------~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  277 (277)
T cd05032         240 L------DLPENC------PDKLLELMRMCWQYNPKMRPTFLEIVSSLKD  277 (277)
T ss_pred             C------CCCCCC------CHHHHHHHHHHcCCChhhCCCHHHHHHHhcC
Confidence            0      011111      2356788899999999999999999998863

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.98  E-value=2.3e-32  Score=312.00  Aligned_cols=188  Identities=19%  Similarity=0.320  Sum_probs=158.3

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .+..+|+|++|.||+|+...++..||+|++.....   .....+.+|+..+.+ ++|||||++++++.+++..|+|||||
T Consensus         5 ~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~-~~h~~iv~~~~~~~~~~~~~lv~E~~   83 (382)
T cd05625           5 KIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAE-ADNEWVVRLYYSFQDKDNLYFVMDYI   83 (382)
T ss_pred             EEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHh-CCCCcCCeEEEEEEeCCEEEEEEeCC
Confidence            45567999999999999988999999999864321   122345667666666 79999999999999999999999999


Q ss_pred             CCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-------
Q 002105          764 EGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-------  833 (966)
Q Consensus       764 ~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-------  833 (966)
                      ++|+|.+++..   +++.....++.||+.||+|||   +.+|+||||||+|||++.++  .++++|||++...       
T Consensus        84 ~gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH---~~~ivHrDlKp~NILl~~~g--~~kL~DFGla~~~~~~~~~~  158 (382)
T cd05625          84 PGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVH---KMGFIHRDIKPDNILIDRDG--HIKLTDFGLCTGFRWTHDSK  158 (382)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCC--CEEEeECCCCcccccccccc
Confidence            99999999863   678888889999999999999   55899999999999998654  5788999975310       


Q ss_pred             ----------------------------------------------CCCCcCCcccccccccCCCCCCCcchHHHHHHHH
Q 002105          834 ----------------------------------------------DSKSINSSAYVAPETKESKDITEKGDIYGFGLIL  867 (966)
Q Consensus       834 ----------------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l  867 (966)
                                                                    ....+||+.|||||++.+..++.++||||+||++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil  238 (382)
T cd05625         159 YYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVIL  238 (382)
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHH
Confidence                                                          0123589999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCC
Q 002105          868 IDLLTGKSPADAD  880 (966)
Q Consensus       868 ~el~tg~~p~~~~  880 (966)
                      |||+||+.||...
T Consensus       239 ~elltG~~Pf~~~  251 (382)
T cd05625         239 YEMLVGQPPFLAQ  251 (382)
T ss_pred             HHHHhCCCCCCCC
Confidence            9999999999754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.98  E-value=4.1e-32  Score=288.06  Aligned_cols=241  Identities=21%  Similarity=0.278  Sum_probs=181.5

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc---------c-----cchHHHHHHHHhhcCCCceeEEeeEEe
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---------T-----SSFWPDVSQFGKLIMHPNIVRLHGVCR  751 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---------~-----~~~~~e~~~~~~~~~H~niv~l~g~~~  751 (966)
                      +....+|+|.+|.|-+|+...+++.||+|.+.+.....         .     +...+|+..+.+ ++|||||+|+++..
T Consensus       100 ~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKk-l~H~nVV~LiEvLD  178 (576)
T KOG0585|consen  100 ELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKK-LHHPNVVKLIEVLD  178 (576)
T ss_pred             ehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHh-cCCcCeeEEEEeec
Confidence            44556799999999999999999999999986542211         1     235677777766 79999999999987


Q ss_pred             c--CCeeEEEEEccCCCCHHHHHH--c-CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEec
Q 002105          752 S--EKAAYLVYEYIEGKELSEVLR--N-LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSV  826 (966)
Q Consensus       752 ~--~~~~~lv~Ey~~~g~L~~~l~--~-l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~  826 (966)
                      +  .+.+|||+|||..|.+...=.  . ++..+.+++..++..||+|||   ..+||||||||+|+|++++  .++|++|
T Consensus       179 DP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH---~QgiiHRDIKPsNLLl~~~--g~VKIsD  253 (576)
T KOG0585|consen  179 DPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLH---YQGIIHRDIKPSNLLLSSD--GTVKISD  253 (576)
T ss_pred             CcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHH---hcCeeccccchhheEEcCC--CcEEeec
Confidence            6  467999999999998754321  2 788999999999999999999   5699999999999999976  5689999


Q ss_pred             cccceecC-----------CCCcCCcccccccccCCCC---C-CCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHH
Q 002105          827 PGLAYCTD-----------SKSINSSAYVAPETKESKD---I-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWA  891 (966)
Q Consensus       827 ~~~~~~~~-----------~~~~~~~~y~aPE~~~~~~---~-~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~  891 (966)
                      ||.+....           ...+|||+|||||...++.   + +.+.||||+||+||.++-|+.||.+++. .+.....+
T Consensus       254 FGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~-~~l~~KIv  332 (576)
T KOG0585|consen  254 FGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFE-LELFDKIV  332 (576)
T ss_pred             cceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchH-HHHHHHHh
Confidence            99986531           2358999999999876632   3 5688999999999999999999976542 11111111


Q ss_pred             HHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          892 RYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       892 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                                  -+|..-+..+   +.-.+..+++.+.+++||++|-+..||....-
T Consensus       333 ------------n~pL~fP~~p---e~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpw  374 (576)
T KOG0585|consen  333 ------------NDPLEFPENP---EINEDLKDLIKRLLEKDPEQRITLPDIKLHPW  374 (576)
T ss_pred             ------------cCcccCCCcc---cccHHHHHHHHHHhhcChhheeehhhheecce
Confidence                        1121111111   22234556777888999999999999876543

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.98  E-value=8.1e-32  Score=295.28  Aligned_cols=241  Identities=22%  Similarity=0.365  Sum_probs=184.1

Q ss_pred             cccccCCCCCccEEEEEEEec-----CCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLA-----NDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~-----~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      .....+|.||+|.||+|....     ++..||+|++..... ...++|.+|+..+.+ ++|||||+++++|..++..++|
T Consensus         8 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~-l~h~~iv~~~~~~~~~~~~~lv   86 (288)
T cd05050           8 EYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAE-FDHPNIVKLLGVCAVGKPMCLL   86 (288)
T ss_pred             eecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHh-cCCCchheEEEEEcCCCccEEE
Confidence            334567999999999998632     567899998754322 223457788888777 6999999999999999999999


Q ss_pred             EEccCCCCHHHHHHc-------------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEE
Q 002105          760 YEYIEGKELSEVLRN-------------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV  814 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~-------------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill  814 (966)
                      |||+++|+|.++++.                         +++..+..++.|++.||+|||   ..+++||||||+||++
T Consensus        87 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH---~~~i~H~dl~p~nil~  163 (288)
T cd05050          87 FEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLS---ERKFVHRDLATRNCLV  163 (288)
T ss_pred             EecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCeecccccHhheEe
Confidence            999999999999962                         577888999999999999999   5699999999999999


Q ss_pred             cCCCCceEEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchh
Q 002105          815 DGKDEPHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHE  885 (966)
Q Consensus       815 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~  885 (966)
                      +++.  .++++|||.+....        .....+..|+|||+..+..++.++|||||||++|||++ |..||.+..  .+
T Consensus       164 ~~~~--~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~--~~  239 (288)
T cd05050         164 GENM--VVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMA--HE  239 (288)
T ss_pred             cCCC--ceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC--HH
Confidence            8654  57889999865321        11234567999999998899999999999999999998 888875421  11


Q ss_pred             hHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          886 SIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       886 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                         ++...... ....    + ...      ....++.+++.+|++.+|++|||+.|+++.|++
T Consensus       240 ---~~~~~~~~-~~~~----~-~~~------~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~~  288 (288)
T cd05050         240 ---EVIYYVRD-GNVL----S-CPD------NCPLELYNLMRLCWSKLPSDRPSFASINRILQR  288 (288)
T ss_pred             ---HHHHHHhc-CCCC----C-CCC------CCCHHHHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence               12111111 1110    0 001      112357778899999999999999999999874

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.98  E-value=3.3e-33  Score=302.80  Aligned_cols=237  Identities=19%  Similarity=0.338  Sum_probs=187.3

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +...|-|+||.||||....++...|.|.+.-.....-++|+.|+..++. +.||+||++++.|..++.+||..|||.||-
T Consensus        37 iGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~-CdHP~ivkLl~ayy~enkLwiliEFC~GGA  115 (1187)
T KOG0579|consen   37 IGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAE-CDHPVIVKLLSAYYFENKLWILIEFCGGGA  115 (1187)
T ss_pred             HhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhc-CCChHHHHHHHHHhccCceEEEEeecCCch
Confidence            4457899999999999877776667777655556667789999999999 799999999999999999999999999999


Q ss_pred             HHHHH----HcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee------cCCCC
Q 002105          768 LSEVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------TDSKS  837 (966)
Q Consensus       768 L~~~l----~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~------~~~~~  837 (966)
                      .+..+    +.++..+..-++.+++.||.|||   +..|||||+|+.|||++-++  .+++.|||++..      .....
T Consensus       116 VDaimlEL~r~LtE~QIqvvc~q~ldALn~LH---s~~iIHRDLKAGNiL~TldG--dirLADFGVSAKn~~t~qkRDsF  190 (1187)
T KOG0579|consen  116 VDAIMLELGRVLTEDQIQVVCYQVLDALNWLH---SQNIIHRDLKAGNILLTLDG--DIRLADFGVSAKNKSTRQKRDSF  190 (1187)
T ss_pred             HhHHHHHhccccchHHHHHHHHHHHHHHHHHh---hcchhhhhccccceEEEecC--cEeeecccccccchhHHhhhccc
Confidence            98876    35889999999999999999999   66999999999999998554  478999998743      23467


Q ss_pred             cCCccccccccc-----CCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          838 INSSAYVAPETK-----ESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       838 ~~~~~y~aPE~~-----~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                      +|||+|||||+.     ...+|+.++|||||||+|.||+.+.+|-.. ...+..+...+..     .     .|.+. ..
T Consensus       191 IGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhe-lnpMRVllKiaKS-----e-----PPTLl-qP  258 (1187)
T KOG0579|consen  191 IGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHE-LNPMRVLLKIAKS-----E-----PPTLL-QP  258 (1187)
T ss_pred             cCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccc-cchHHHHHHHhhc-----C-----CCccc-Cc
Confidence            899999999975     457899999999999999999999999532 2222222222211     1     11111 11


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         ...-..+.++..+|+.++|..||+++++++
T Consensus       259 ---S~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~  288 (1187)
T KOG0579|consen  259 ---SHWSRSFSDFLKRCLVKNPRNRPPAAQLLK  288 (1187)
T ss_pred             ---chhhhHHHHHHHHHHhcCCccCCCHHHHhh
Confidence               223345566777999999999999988763

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.98  E-value=1.2e-31  Score=295.13  Aligned_cols=246  Identities=19%  Similarity=0.280  Sum_probs=181.3

Q ss_pred             cccCCCCCccEEEEEEEe----------------cCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEE
Q 002105          688 LTSRGKKGVSSSYKVRSL----------------ANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVC  750 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~----------------~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~  750 (966)
                      ...+|+||+|.||+++..                .++..||+|++.... .....+|..|+..+.+ ++||||+++++++
T Consensus        10 ~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~-l~~~~i~~~~~~~   88 (296)
T cd05095          10 KEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSR-LKDPNIIRLLAVC   88 (296)
T ss_pred             eeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHh-CCCCCcceEEEEE
Confidence            345799999999998532                234568888876432 2233467788887777 6999999999999


Q ss_pred             ecCCeeEEEEEccCCCCHHHHHHc--------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcC
Q 002105          751 RSEKAAYLVYEYIEGKELSEVLRN--------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDG  816 (966)
Q Consensus       751 ~~~~~~~lv~Ey~~~g~L~~~l~~--------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~  816 (966)
                      ..++..++||||+++|+|.+++..              ++|.+..+++.|++.|++|||   +.+++||||||+||+++.
T Consensus        89 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dlkp~Nili~~  165 (296)
T cd05095          89 ITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLS---SLNFVHRDLATRNCLVGK  165 (296)
T ss_pred             ecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHH---HCCeecccCChheEEEcC
Confidence            999999999999999999999853              567789999999999999999   558999999999999986


Q ss_pred             CCCceEEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc--CCCCCCCCCCchhh
Q 002105          817 KDEPHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT--GKSPADADFGVHES  886 (966)
Q Consensus       817 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t--g~~p~~~~~~~~~~  886 (966)
                      +  ..++++|||.+....        ....+++.|+|||+..++.++.++|||||||++|||+|  |..|+.... ..+.
T Consensus       166 ~--~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~-~~~~  242 (296)
T cd05095         166 N--YTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLS-DEQV  242 (296)
T ss_pred             C--CCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccC-hHHH
Confidence            4  457889999875321        11233567999999888889999999999999999998  667775321 1121


Q ss_pred             HHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          887 IVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       887 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      + +............. ..|.. .      .....+.+++.+||+.||++||+|.||.+.|++
T Consensus       243 ~-~~~~~~~~~~~~~~-~~~~~-~------~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  296 (296)
T cd05095         243 I-ENTGEFFRDQGRQV-YLPKP-A------LCPDSLYKLMLSCWRRNAKERPSFQEIHATLLE  296 (296)
T ss_pred             H-HHHHHHHhhccccc-cCCCC-C------CCCHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            1 11111111100000 01110 1      112356778899999999999999999998863

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.98  E-value=2e-31  Score=286.78  Aligned_cols=235  Identities=22%  Similarity=0.327  Sum_probs=181.2

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEe-cCCeeEEEEEccCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR-SEKAAYLVYEYIEGK  766 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~-~~~~~~lv~Ey~~~g  766 (966)
                      ...+|+||+|.||++..  .|..||+|......  ..+.|..|+..+.+ ++||||++++|++. .++..++||||+++|
T Consensus        11 ~~~lg~g~~~~v~~~~~--~~~~~~~k~~~~~~--~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~   85 (256)
T cd05082          11 LQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA--TAQAFLAEASVMTQ-LRHSNLVQLLGVIVEEKGGLYIVTEYMAKG   85 (256)
T ss_pred             eeeecccCCCeEEEEEE--cCCcEEEEEeCCCc--hHHHHHHHHHHHHh-CCCCCeeeEEEEEEcCCCceEEEEECCCCC
Confidence            34568899999999875  47788999874322  23457788887777 79999999999865 456789999999999


Q ss_pred             CHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---CCCc
Q 002105          767 ELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---SKSI  838 (966)
Q Consensus       767 ~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---~~~~  838 (966)
                      +|.++++.     ++|..+.+++.+++.||+|||   ..+++||||||+||+++++.  .++++|||.+....   ....
T Consensus        86 ~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nil~~~~~--~~kl~dfg~~~~~~~~~~~~~  160 (256)
T cd05082          86 SLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---ANNFVHRDLAARNVLVSEDN--VAKVSDFGLTKEASSTQDTGK  160 (256)
T ss_pred             cHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeccccchheEEEcCCC--cEEecCCccceeccccCCCCc
Confidence            99999863     789999999999999999999   55899999999999998654  57889999876432   2223


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      ++..|+|||+..+..++.++|||||||++|||++ |+.||...  ....+..+...   ...      +......     
T Consensus       161 ~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~--~~~~~~~~~~~---~~~------~~~~~~~-----  224 (256)
T cd05082         161 LPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI--PLKDVVPRVEK---GYK------MDAPDGC-----  224 (256)
T ss_pred             cceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHhc---CCC------CCCCCCC-----
Confidence            4568999999998899999999999999999998 99998642  11212122211   100      0111111     


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                       ..++.+++.+|++.+|++|||+.++++.|++
T Consensus       225 -~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  255 (256)
T cd05082         225 -PPVVYDVMKQCWHLDAATRPSFLQLREQLEH  255 (256)
T ss_pred             -CHHHHHHHHHHhcCChhhCcCHHHHHHHHhc
Confidence             2356678889999999999999999999986

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.98  E-value=1e-31  Score=296.66  Aligned_cols=244  Identities=20%  Similarity=0.312  Sum_probs=184.0

Q ss_pred             cccccCCCCCccEEEEEEEecCCcE----EEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQ----FVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~----vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      .....+|.|++|.||+|....+|..    ||+|.+..... ....++..|+..+.+ ++|||||+++|+|..+ ..++|+
T Consensus        10 ~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~-l~h~niv~~~~~~~~~-~~~~v~   87 (303)
T cd05110          10 KRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMAS-MDHPHLVRLLGVCLSP-TIQLVT   87 (303)
T ss_pred             eeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHh-CCCCCcccEEEEEcCC-Cceeee
Confidence            3455689999999999998777763    57776643322 112356777776666 6999999999999764 467999


Q ss_pred             EccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          761 EYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       761 Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      ||+++|+|.+++.    .+++..+..++.|++.||+|||   ..+|+||||||+||+++.+.  .++++|||.+....  
T Consensus        88 e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~dikp~Nill~~~~--~~kL~Dfg~~~~~~~~  162 (303)
T cd05110          88 QLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLE---ERRLVHRDLAARNVLVKSPN--HVKITDFGLARLLEGD  162 (303)
T ss_pred             hhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHh---hcCeeccccccceeeecCCC--ceEEccccccccccCc
Confidence            9999999999986    3789999999999999999999   56899999999999998654  47889999875422  


Q ss_pred             ------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCccccccccc
Q 002105          835 ------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF  907 (966)
Q Consensus       835 ------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  907 (966)
                            ....++..|+|||++.+..++.++|||||||++||++| |+.||.+..  .....++...   ....   ..+ 
T Consensus       163 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~--~~~~~~~~~~---~~~~---~~~-  233 (303)
T cd05110         163 EKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIP--TREIPDLLEK---GERL---PQP-  233 (303)
T ss_pred             ccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHC---CCCC---CCC-
Confidence                  11234568999999998999999999999999999998 899986432  1222222221   1110   001 


Q ss_pred             ccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       908 ~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                        ..      ....+.+++..||..+|++||+|+|+++.|+++.+.
T Consensus       234 --~~------~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~~  271 (303)
T cd05110         234 --PI------CTIDVYMVMVKCWMIDADSRPKFKELAAEFSRMARD  271 (303)
T ss_pred             --CC------CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence              11      113566788999999999999999999999985544

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.98  E-value=1.8e-31  Score=289.02  Aligned_cols=238  Identities=20%  Similarity=0.323  Sum_probs=182.3

Q ss_pred             ccCCCCCccEEEEEEEecCCc---EEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          689 TSRGKKGVSSSYKVRSLANDM---QFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~---~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ..+|+|++|.||+|+...++.   .+|+|.+.... ....+.|..|+..+.+ ++||||+++++++..++..++||||++
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~   88 (267)
T cd05066          10 KVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQ-FDHPNIIHLEGVVTKSKPVMIVTEYME   88 (267)
T ss_pred             eeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHh-CCCCCcceEEEEEecCCccEEEEEcCC
Confidence            456889999999998764443   68888775322 1223457778777766 699999999999999999999999999


Q ss_pred             CCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-----
Q 002105          765 GKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----  835 (966)
Q Consensus       765 ~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-----  835 (966)
                      +|+|.++++.    +++.+...++.|++.|++|||   +.+++||||||+||+++.+  ..+++.|||.+.....     
T Consensus        89 ~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~h~dlkp~nili~~~--~~~~l~dfg~~~~~~~~~~~~  163 (267)
T cd05066          89 NGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILVNSN--LVCKVSDFGLSRVLEDDPEAA  163 (267)
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeehhhchhcEEECCC--CeEEeCCCCccccccccccee
Confidence            9999999863    789999999999999999999   5689999999999999865  4578899987754211     


Q ss_pred             ----CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          836 ----KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       836 ----~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                          ...++..|+|||++.+..++.++|||||||++||+++ |+.||..... .+ ...+...   ...     .|. ..
T Consensus       164 ~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~-~~-~~~~~~~---~~~-----~~~-~~  232 (267)
T cd05066         164 YTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSN-QD-VIKAIEE---GYR-----LPA-PM  232 (267)
T ss_pred             eecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCH-HH-HHHHHhC---CCc-----CCC-CC
Confidence                1122457999999998899999999999999999886 9999864311 11 1122211   100     011 11


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      ..      ...+.+++.+|++.+|.+||+|.+|++.|++
T Consensus       233 ~~------~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  265 (267)
T cd05066         233 DC------PAALHQLMLDCWQKDRNERPKFEQIVSILDK  265 (267)
T ss_pred             CC------CHHHHHHHHHHcccCchhCCCHHHHHHHHHh
Confidence            11      2346678889999999999999999999987

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.98  E-value=3.5e-31  Score=287.13  Aligned_cols=240  Identities=24%  Similarity=0.371  Sum_probs=184.1

Q ss_pred             ccCCCCCccEEEEEEEec-CCcEEEEEEEeccCcc----------cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeE
Q 002105          689 TSRGKKGVSSSYKVRSLA-NDMQFVVKKIIDVNTI----------TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAY  757 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~-~~~~vavk~~~~~~~~----------~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~  757 (966)
                      ..+|+|++|.||++.... .+..+|+|++......          ...++..|+..+.+.++||||+++++++.+++..+
T Consensus         6 ~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~   85 (269)
T cd08528           6 EHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLENDRLY   85 (269)
T ss_pred             hhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccCCeEE
Confidence            456899999999999866 5788999987533211          11235667777776679999999999999999999


Q ss_pred             EEEEccCCCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccc
Q 002105          758 LVYEYIEGKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA  830 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~  830 (966)
                      +||||+++++|.+++.       .+++..+++++.|++.||.|||.  ..+++||||||+||+++.+.  .+++.|||.+
T Consensus        86 lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~--~~~i~H~dl~~~nil~~~~~--~~~l~dfg~~  161 (269)
T cd08528          86 IVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHK--EKRIVHRDLTPNNIMLGEDD--KVTITDFGLA  161 (269)
T ss_pred             EEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcc--CCceeecCCCHHHEEECCCC--cEEEecccce
Confidence            9999999999998873       37888899999999999999994  24799999999999998654  4688899987


Q ss_pred             eecC-----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccc
Q 002105          831 YCTD-----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVD  905 (966)
Q Consensus       831 ~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  905 (966)
                      ....     ....++..|+|||+..+..++.++|||||||++|||++|+.||....  ..   ......... .    ..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~--~~---~~~~~~~~~-~----~~  231 (269)
T cd08528         162 KQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTN--ML---SLATKIVEA-V----YE  231 (269)
T ss_pred             eecccccccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccC--HH---HHHHHHhhc-c----CC
Confidence            6432     23457888999999998889999999999999999999999986431  11   111111111 0    11


Q ss_pred             ccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       906 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                      |......      ..++.+++.+||+.||++||+|.||.++++
T Consensus       232 ~~~~~~~------~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~  268 (269)
T cd08528         232 PLPEGMY------SEDVTDVITSCLTPDAEARPDIIQVSAMIS  268 (269)
T ss_pred             cCCcccC------CHHHHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence            1111111      134667778999999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.98  E-value=1.7e-31  Score=292.13  Aligned_cols=232  Identities=21%  Similarity=0.256  Sum_probs=179.2

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc---cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI---TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~---~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ..+|+|++|.||++....+++.+|+|++......   ....+..|+..+.+ ++|+||+++++++..++..++||||+++
T Consensus         6 ~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~-l~~~~i~~~~~~~~~~~~~~lv~e~~~~   84 (285)
T cd05632           6 RVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEK-VNSQFVVNLAYAYETKDALCLVLTIMNG   84 (285)
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHH-cCCcCceeEEEEEecCCEEEEEEEeccC
Confidence            4478999999999999889999999988643211   12345677777666 7999999999999999999999999999


Q ss_pred             CCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----C
Q 002105          766 KELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----S  835 (966)
Q Consensus       766 g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----~  835 (966)
                      |+|.+++.     .++|.....++.|++.||+|||   ..+|+||||||+||+++++.  .+++.|||++....     .
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~~~iiH~dikp~Nili~~~~--~~kl~Dfg~~~~~~~~~~~~  159 (285)
T cd05632          85 GDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLH---RENTVYRDLKPENILLDDYG--HIRISDLGLAVKIPEGESIR  159 (285)
T ss_pred             ccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCCHHHEEECCCC--CEEEecCCcceecCCCCccc
Confidence            99998884     3789999999999999999999   56899999999999998654  57899999875421     2


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...|+..|+|||++.+..++.++|||||||++|||+||+.||..... ......+... ....      .+......   
T Consensus       160 ~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~-~~~~~~~~~~-~~~~------~~~~~~~~---  228 (285)
T cd05632         160 GRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKE-KVKREEVDRR-VLET------EEVYSAKF---  228 (285)
T ss_pred             CCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHh-hhcc------ccccCccC---
Confidence            24678999999999988999999999999999999999999975321 1111111111 1110      00111111   


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCA  940 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~  940 (966)
                         ..++.+++..|++.||++||++
T Consensus       229 ---~~~~~~li~~~l~~~P~~R~~~  250 (285)
T cd05632         229 ---SEEAKSICKMLLTKDPKQRLGC  250 (285)
T ss_pred             ---CHHHHHHHHHHccCCHhHcCCC
Confidence               1245677889999999999994

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.98  E-value=1.1e-31  Score=303.70  Aligned_cols=189  Identities=22%  Similarity=0.325  Sum_probs=156.1

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEecCC------ee
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK------AA  756 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~------~~  756 (966)
                      +.....+|+|++|.||+++...+|..||||++...  .......+.+|+..+.+ ++|||||++++++...+      ..
T Consensus        23 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~~~~~~  101 (359)
T cd07876          23 YQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKC-VNHKNIISLLNVFTPQKSLEEFQDV  101 (359)
T ss_pred             eEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHh-CCCCCEeeeeeeeccCCCcccccee
Confidence            34556789999999999999888999999998543  22233456777777766 79999999999986543      57


Q ss_pred             EEEEEccCCCCHHHHHH-cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-
Q 002105          757 YLVYEYIEGKELSEVLR-NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       757 ~lv~Ey~~~g~L~~~l~-~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-  834 (966)
                      |+||||+++ +|.+.++ .+++.....++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||++.... 
T Consensus       102 ~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~ivHrDlkp~NIl~~~~~--~~kl~Dfg~a~~~~~  175 (359)
T cd07876         102 YLVMELMDA-NLCQVIHMELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDC--TLKILDFGLARTACT  175 (359)
T ss_pred             EEEEeCCCc-CHHHHHhccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCC--CEEEecCCCcccccc
Confidence            999999985 5655554 5889999999999999999999   55999999999999999754  57889999875422 


Q ss_pred             ----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                          ....+|+.|+|||++.+..++.++|||||||++|||+||+.||.+.
T Consensus       176 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~  225 (359)
T cd07876         176 NFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGT  225 (359)
T ss_pred             CccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence                2346788999999999999999999999999999999999999753

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=1.7e-32  Score=306.60  Aligned_cols=229  Identities=21%  Similarity=0.303  Sum_probs=173.1

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCccc---ccchHHHHHHHHhhc--CCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---TSSFWPDVSQFGKLI--MHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---~~~~~~e~~~~~~~~--~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      +|+|++|.||+|+...++..||||++.......   ...+..|...+.+..  +||||+++++++.+++..|+||||+++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            488999999999998899999999986432211   122344555555534  799999999999999999999999999


Q ss_pred             CCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCC
Q 002105          766 KELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSK  836 (966)
Q Consensus       766 g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~  836 (966)
                      |+|.++++   .+++.....++.||++||+|||   +.+|+||||||+||+++.+.  .++++|||++...      ...
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH---~~~ivHrDlkp~Nili~~~~--~~kl~Dfg~a~~~~~~~~~~~~  155 (330)
T cd05586          81 GELFWHLQKEGRFSEDRAKFYIAELVLALEHLH---KYDIVYRDLKPENILLDATG--HIALCDFGLSKANLTDNKTTNT  155 (330)
T ss_pred             ChHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCC--CEEEecCCcCcCCCCCCCCccC
Confidence            99999886   3889999999999999999999   56899999999999999654  4789999987542      123


Q ss_pred             CcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          837 SINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ..||+.|||||++.+. .++.++|||||||++|||+||+.||....  ....   ....... .. . +.   ....   
T Consensus       156 ~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~--~~~~---~~~i~~~-~~-~-~~---~~~~---  221 (330)
T cd05586         156 FCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAED--TQQM---YRNIAFG-KV-R-FP---KNVL---  221 (330)
T ss_pred             ccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCC--HHHH---HHHHHcC-CC-C-CC---CccC---
Confidence            4689999999998754 48999999999999999999999986531  1111   1111110 00 0 00   0011   


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCAS  941 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~  941 (966)
                      .+   ++.+++.+|++.||++||++.
T Consensus       222 ~~---~~~~li~~~L~~~P~~R~~~~  244 (330)
T cd05586         222 SD---EGRQFVKGLLNRNPQHRLGAH  244 (330)
T ss_pred             CH---HHHHHHHHHcCCCHHHCCCCC
Confidence            12   445677899999999999643

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.98  E-value=1e-31  Score=295.61  Aligned_cols=238  Identities=18%  Similarity=0.282  Sum_probs=185.3

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|.|++|.||++....++..||+|++........+.+..|+..+.+ ++||||+++++++..++..|+||||+++|
T Consensus        23 ~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~-~~h~~i~~~~~~~~~~~~~~lv~e~~~~~  101 (297)
T cd06656          23 RFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRE-NKNPNIVNYLDSYLVGDELWVVMEYLAGG  101 (297)
T ss_pred             eeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHh-CCCCCEeeEEEEEecCCEEEEeecccCCC
Confidence            34457899999999999888999999999865444444556677776666 79999999999999999999999999999


Q ss_pred             CHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CCCc
Q 002105          767 ELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SKSI  838 (966)
Q Consensus       767 ~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~~~  838 (966)
                      +|.++++.  +++.++..++.+++.||+|||   +.+++||||||+||+++.+.  .+++.|||.+....      ....
T Consensus       102 ~L~~~~~~~~~~~~~~~~~~~~l~~~L~~LH---~~~i~H~dL~p~Nili~~~~--~~~l~Dfg~~~~~~~~~~~~~~~~  176 (297)
T cd06656         102 SLTDVVTETCMDEGQIAAVCRECLQALDFLH---SNQVIHRDIKSDNILLGMDG--SVKLTDFGFCAQITPEQSKRSTMV  176 (297)
T ss_pred             CHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCC--CEEECcCccceEccCCccCcCccc
Confidence            99999864  789999999999999999999   55899999999999998654  57889999875422      1235


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      +++.|+|||+..+..++.++|||||||++||++||+.||.......... .    ..... ......|         ...
T Consensus       177 ~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~-~----~~~~~-~~~~~~~---------~~~  241 (297)
T cd06656         177 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALY-L----IATNG-TPELQNP---------ERL  241 (297)
T ss_pred             CCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchhee-e----eccCC-CCCCCCc---------ccc
Confidence            7889999999998889999999999999999999999986532111100 0    00000 0000000         111


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ...+.+++.+||+.+|++||++++|++
T Consensus       242 ~~~~~~li~~~l~~~p~~Rps~~~il~  268 (297)
T cd06656         242 SAVFRDFLNRCLEMDVDRRGSAKELLQ  268 (297)
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            124567788999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.98  E-value=3.3e-31  Score=287.14  Aligned_cols=240  Identities=18%  Similarity=0.266  Sum_probs=170.9

Q ss_pred             cCCCCCccEEEEEEEecCC--cEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          690 SRGKKGVSSSYKVRSLAND--MQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~--~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      .+|+|++|.||+++....+  ..+++|++..... ...+.|.+|+..+.+ ++|||||+++++|......|+||||+++|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   80 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRI-LQHPNILQCLGQCVEAIPYLLVFEYCELG   80 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhc-cCCcchhheEEEecCCCccEEEEecCCCC
Confidence            3689999999999753332  2455565543322 233467778777766 69999999999999999999999999999


Q ss_pred             CHHHHHHc-------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------
Q 002105          767 ELSEVLRN-------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------  833 (966)
Q Consensus       767 ~L~~~l~~-------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------  833 (966)
                      +|.++++.       .++.....++.||++||+|||   +.+++||||||+||+++.+.  .+++.|||.+...      
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dikp~nil~~~~~--~~~l~Dfg~~~~~~~~~~~  155 (268)
T cd05086          81 DLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMH---KHNFLHSDLALRNCFLTSDL--TVKVGDYGIGPSRYKEDYI  155 (268)
T ss_pred             cHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHH---HCCeeccCCccceEEEcCCc--cEEecccccccccCcchhh
Confidence            99999863       345566789999999999999   55899999999999998654  4788999986431      


Q ss_pred             --CCCCcCCcccccccccCC-------CCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCccccc
Q 002105          834 --DSKSINSSAYVAPETKES-------KDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTW  903 (966)
Q Consensus       834 --~~~~~~~~~y~aPE~~~~-------~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  903 (966)
                        .....++..|+|||+...       ..++.++|||||||++|||++ |..||... ...+..    .....+.. ...
T Consensus       156 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~-~~~~~~----~~~~~~~~-~~~  229 (268)
T cd05086         156 ETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHL-SDREVL----NHVIKDQQ-VKL  229 (268)
T ss_pred             hcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCC-CHHHHH----HHHHhhcc-ccc
Confidence              123356788999998743       245789999999999999997 46676532 112212    11111111 112


Q ss_pred             ccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          904 VDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       904 ~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                      .+|.+...+.   +   ++.+++..|| .+|++||+|+||+++|.
T Consensus       230 ~~~~~~~~~~---~---~~~~l~~~c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         230 FKPQLELPYS---E---RWYEVLQFCW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             CCCccCCCCc---H---HHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence            3343332222   2   3444566899 67999999999998873

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.98  E-value=2.4e-31  Score=286.18  Aligned_cols=236  Identities=22%  Similarity=0.329  Sum_probs=185.7

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|.|++|.||++..  .|+.||+|++..... ..+++..|+..+.+ ++||||+++++++..++..++||||+++|+
T Consensus        11 ~~~ig~g~~g~v~~~~~--~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~   86 (256)
T cd05039          11 GATIGKGEFGDVMLGDY--RGQKVAVKCLKDDST-AAQAFLAEASVMTT-LRHPNLVQLLGVVLQGNPLYIVTEYMAKGS   86 (256)
T ss_pred             eeeeecCCCceEEEEEe--cCcEEEEEEeccchh-HHHHHHHHHHHHHh-cCCcceeeeEEEEcCCCCeEEEEEecCCCc
Confidence            44568899999999986  478999999865443 44568888888777 699999999999999999999999999999


Q ss_pred             HHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC---CCcC
Q 002105          768 LSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS---KSIN  839 (966)
Q Consensus       768 L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~---~~~~  839 (966)
                      |.++++     .++|.....++.|++.|++|||   ..+++||||||+||+++.+.  .++++|+|.+.....   ....
T Consensus        87 L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh---~~~i~H~di~p~Nili~~~~--~~~l~d~g~~~~~~~~~~~~~~  161 (256)
T cd05039          87 LVDYLRSRGRAVITLAQQLGFALDVCEGMEYLE---EKNFVHRDLAARNVLVSEDL--VAKVSDFGLAKEASQGQDSGKL  161 (256)
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCccchhcccceEEEeCCC--CEEEcccccccccccccccCCC
Confidence            999985     3789999999999999999999   56899999999999998654  467889988764321   2233


Q ss_pred             CcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          840 SSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       840 ~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      +..|+|||+.....++.++||||||+++||+++ |+.||....  ...+.+....   +..      +......      
T Consensus       162 ~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~--~~~~~~~~~~---~~~------~~~~~~~------  224 (256)
T cd05039         162 PVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP--LKDVVPHVEK---GYR------MEAPEGC------  224 (256)
T ss_pred             cccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHHhc---CCC------CCCccCC------
Confidence            557999999988889999999999999999997 999986431  1211111111   100      0000111      


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      ..++.+++.+|++.+|++||+++|++++|+.
T Consensus       225 ~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  255 (256)
T cd05039         225 PPEVYKVMKDCWELDPAKRPTFKQLREQLAL  255 (256)
T ss_pred             CHHHHHHHHHHhccChhhCcCHHHHHHHHhc
Confidence            2356778889999999999999999999975

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.98  E-value=5.9e-32  Score=305.58  Aligned_cols=189  Identities=21%  Similarity=0.309  Sum_probs=155.3

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecC------Cee
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE------KAA  756 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~------~~~  756 (966)
                      +.....+|+|++|.||+++....+..||||++....  ......+.+|+..+.+ ++|||||++++++...      ...
T Consensus        19 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~~~~~~   97 (355)
T cd07874          19 YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKC-VNHKNIISLLNVFTPQKSLEEFQDV   97 (355)
T ss_pred             eeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHH-hCCCchhceeeeeecccccccccee
Confidence            344556899999999999998889999999986432  2223456677766665 7999999999998643      357


Q ss_pred             EEEEEccCCCCHHHHHH-cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-
Q 002105          757 YLVYEYIEGKELSEVLR-NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       757 ~lv~Ey~~~g~L~~~l~-~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-  834 (966)
                      |+||||+++ ++.++++ .+++.....++.|+++||+|||   +.+|+||||||+||+++.+.  .++++|||++.... 
T Consensus        98 ~lv~e~~~~-~l~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDikp~Nill~~~~--~~kl~Dfg~~~~~~~  171 (355)
T cd07874          98 YLVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDC--TLKILDFGLARTAGT  171 (355)
T ss_pred             EEEhhhhcc-cHHHHHhhcCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHHEEECCCC--CEEEeeCcccccCCC
Confidence            999999985 5666554 5899999999999999999999   56999999999999998654  47889999886532 


Q ss_pred             ----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                          ....+|+.|+|||++.+..++.++|||||||++|||++|+.||.+.
T Consensus       172 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  221 (355)
T cd07874         172 SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR  221 (355)
T ss_pred             ccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence                2346789999999999999999999999999999999999999753

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.98  E-value=1.8e-31  Score=291.92  Aligned_cols=237  Identities=22%  Similarity=0.262  Sum_probs=182.4

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc---ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ..+|+|++|.||++....+++.||+|++.......   ...+..|+..+.+ ++|+||+++++++.+++..++||||+++
T Consensus         6 ~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~-l~~~~i~~~~~~~~~~~~~~lv~e~~~g   84 (285)
T cd05630           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEK-VNSRFVVSLAYAYETKDALCLVLTLMNG   84 (285)
T ss_pred             EEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHh-CCCCCeeeeeEEEecCCEEEEEEEecCC
Confidence            44689999999999998999999999986432211   2335667776666 7999999999999999999999999999


Q ss_pred             CCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----C
Q 002105          766 KELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----S  835 (966)
Q Consensus       766 g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----~  835 (966)
                      |+|.+++.     .+++..+..++.|++.||+|||   ..+|+||||||+||+++++.  .+++.|||++....     .
T Consensus        85 ~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~iiH~dikp~Nil~~~~~--~~~l~Dfg~~~~~~~~~~~~  159 (285)
T cd05630          85 GDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLH---QERIVYRDLKPENILLDDHG--HIRISDLGLAVHVPEGQTIK  159 (285)
T ss_pred             CcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHEEECCCC--CEEEeeccceeecCCCcccc
Confidence            99999884     3788999999999999999999   56999999999999999654  47889999875422     1


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...|+..|+|||++.+..++.++|||||||++|||++|+.||.........  +-.......      .........+  
T Consensus       160 ~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~--  229 (285)
T cd05630         160 GRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKR--EEVERLVKE------VQEEYSEKFS--  229 (285)
T ss_pred             CCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchH--HHHHhhhhh------hhhhcCccCC--
Confidence            236789999999999999999999999999999999999999754221100  000100000      0000111111  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCC-----HHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPC-----ASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt-----~~~v~~  945 (966)
                          .++.+++..|++.||++|||     ++|+++
T Consensus       230 ----~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~  260 (285)
T cd05630         230 ----PDARSLCKMLLCKDPKERLGCQGGGAREVKE  260 (285)
T ss_pred             ----HHHHHHHHHHhhcCHHHccCCCCCchHHHHc
Confidence                24567788999999999999     777765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.98  E-value=2.9e-31  Score=286.26  Aligned_cols=235  Identities=19%  Similarity=0.295  Sum_probs=180.3

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCH
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL  768 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L  768 (966)
                      ..+|+|++|.||++.. ..+..+|+|++.... ...+.+..|+..+.+ ++||||+++++++. .+..++||||+++|+|
T Consensus        12 ~~ig~g~~~~v~~~~~-~~~~~~~lK~~~~~~-~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L   87 (260)
T cd05069          12 VKLGQGCFGEVWMGTW-NGTTKVAIKTLKPGT-MMPEAFLQEAQIMKK-LRHDKLVPLYAVVS-EEPIYIVTEFMGKGSL   87 (260)
T ss_pred             eeecCcCCCeEEEEEE-cCCceEEEEEcccCC-ccHHHHHHHHHHHHh-CCCCCeeeEEEEEc-CCCcEEEEEcCCCCCH
Confidence            3578899999999987 455678998765432 233457778877777 79999999999885 4568999999999999


Q ss_pred             HHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-------C
Q 002105          769 SEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-------K  836 (966)
Q Consensus       769 ~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-------~  836 (966)
                      .++++.     ++|..+..++.+++.||+|||   ..+++||||||+||+++++.  .++++|||.+.....       .
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~dl~~~Nill~~~~--~~~l~dfg~~~~~~~~~~~~~~~  162 (260)
T cd05069          88 LDFLKEGDGKYLKLPQLVDMAAQIADGMAYIE---RMNYIHRDLRAANILVGDNL--VCKIADFGLARLIEDNEYTARQG  162 (260)
T ss_pred             HHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccCcceEEEcCCC--eEEECCCccceEccCCcccccCC
Confidence            999963     689999999999999999999   55899999999999998654  578899998754211       1


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ..++..|+|||+..+..++.++|||||||++|||+| |+.||.....  ....++...   ...      +....     
T Consensus       163 ~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~--~~~~~~~~~---~~~------~~~~~-----  226 (260)
T cd05069         163 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVN--REVLEQVER---GYR------MPCPQ-----  226 (260)
T ss_pred             CccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHc---CCC------CCCCc-----
Confidence            234567999999988889999999999999999999 8999865321  111122211   100      00111     


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                       .....+.+++.+|++.+|++||++++|.+.|++
T Consensus       227 -~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         227 -GCPESLHELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             -ccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence             112356677889999999999999999999985

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.98  E-value=1.5e-31  Score=292.55  Aligned_cols=246  Identities=18%  Similarity=0.301  Sum_probs=189.8

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ..+..+|+|++|.||++....++..||+|++.... ....+.+..|+..+.+ ++||||+++++++..++..++||||++
T Consensus         8 ~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~   86 (284)
T cd06620           8 ETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHE-CRSPYIVSFYGAFLNENNICMCMEFMD   86 (284)
T ss_pred             HHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHH-cCCCCcceEeeeEecCCEEEEEEecCC
Confidence            34456799999999999998889999999875432 2223567788877777 699999999999999999999999999


Q ss_pred             CCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----CCCC
Q 002105          765 GKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----DSKS  837 (966)
Q Consensus       765 ~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----~~~~  837 (966)
                      +|+|.++++.   ++|.....++.+++.|+.|||+.  .+++||||||+||+++.+.  .+++.++|++...    ....
T Consensus        87 ~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~--~~i~H~dl~p~nil~~~~~--~~~l~d~gl~~~~~~~~~~~~  162 (284)
T cd06620          87 CGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNV--HRIMHRDIKPSNILVNSRG--QIKLCDFGVSGELINSIADTF  162 (284)
T ss_pred             CCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHh--cCeeccCCCHHHEEECCCC--cEEEccCCcccchhhhccCcc
Confidence            9999998863   78999999999999999999952  3799999999999998654  5788899876432    2234


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc------hhhHHHHHHHhhccCcccccccccccCC
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV------HESIVEWARYCYSDCHLDTWVDPFIRGH  911 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~------~~~~~~~~~~~~~~~~~~~~~d~~~~~~  911 (966)
                      .++..|+|||++.+..++.++|||||||++||++||+.||......      ...+.++........      .+.+.. 
T Consensus       163 ~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-  235 (284)
T cd06620         163 VGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEP------PPRLPS-  235 (284)
T ss_pred             ccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhcc------CCCCCc-
Confidence            6788999999998888999999999999999999999999754321      111112222211110      111110 


Q ss_pred             CcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002105          912 VSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL  947 (966)
Q Consensus       912 ~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L  947 (966)
                          .....++.+++.+|++.||++|||+.||+++.
T Consensus       236 ----~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~  267 (284)
T cd06620         236 ----SDFPEDLRDFVDACLLKDPTERPTPQQLCAMP  267 (284)
T ss_pred             ----hhcCHHHHHHHHHHhcCCcccCcCHHHHhcCc
Confidence                11223567788899999999999999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.98  E-value=2.4e-31  Score=286.78  Aligned_cols=236  Identities=29%  Similarity=0.440  Sum_probs=186.5

Q ss_pred             cCCCCCccEEEEEEEecC---CcEEEEEEEeccCccc-ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          690 SRGKKGVSSSYKVRSLAN---DMQFVVKKIIDVNTIT-TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~---~~~vavk~~~~~~~~~-~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .+|+|++|.||++.....   +..||+|.+....... .+.+..|+..+.+ ++||||+++++++..++..++||||+++
T Consensus         2 ~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~-~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           2 KLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKK-LGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             ccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhh-cCCCChheeeeeecCCCceEEEEEeccC
Confidence            368899999999998765   8899999886543322 4567788888877 6899999999999999999999999999


Q ss_pred             CCHHHHHHc------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec
Q 002105          766 KELSEVLRN------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT  833 (966)
Q Consensus       766 g~L~~~l~~------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~  833 (966)
                      |+|.++++.            ++|.++.+++.|+++|++|||   ..+++||||||+||+++.+  ..++++|||.+...
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~di~p~nili~~~--~~~~l~dfg~~~~~  155 (262)
T cd00192          81 GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLA---SKKFVHRDLAARNCLVGED--LVVKISDFGLSRDV  155 (262)
T ss_pred             CcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHH---cCCcccCccCcceEEECCC--CcEEEccccccccc
Confidence            999999853            589999999999999999999   5699999999999999976  45788999887643


Q ss_pred             CC--------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccc
Q 002105          834 DS--------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWV  904 (966)
Q Consensus       834 ~~--------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  904 (966)
                      ..        ...+++.|+|||......++.++||||+||++|||++ |+.||....  ...+.+...   ....     
T Consensus       156 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~--~~~~~~~~~---~~~~-----  225 (262)
T cd00192         156 YDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLS--NEEVLEYLR---KGYR-----  225 (262)
T ss_pred             ccccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHHH---cCCC-----
Confidence            22        2356788999999988889999999999999999999 699987541  111212211   1100     


Q ss_pred             cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          905 DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       905 d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                       +......      ..++.+++.+|++.+|++||++.|+++.|+
T Consensus       226 -~~~~~~~------~~~~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         226 -LPKPEYC------PDELYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             -CCCCccC------ChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence             0011111      235677888999999999999999998874

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.98  E-value=4.2e-32  Score=297.88  Aligned_cols=238  Identities=16%  Similarity=0.293  Sum_probs=185.4

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|.|++|.||++....++..||+|++........+.+..|+..+.+ ++||||+++++++..++..|+||||+++++
T Consensus        27 ~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~-l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~  105 (292)
T cd06658          27 FIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRD-YHHENVVDMYNSYLVGDELWVVMEFLEGGA  105 (292)
T ss_pred             hhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHh-CCCCcHHHHHHheecCCeEEEEEeCCCCCc
Confidence            3457899999999999888899999998865444444557788887777 699999999999999999999999999999


Q ss_pred             HHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CCCcC
Q 002105          768 LSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SKSIN  839 (966)
Q Consensus       768 L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~~~~  839 (966)
                      |.+++.  .+++.+...++.+|+.||+|||   +.+|+||||||+||+++.+.  .+++.|||++....      ....+
T Consensus       106 L~~~~~~~~l~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nill~~~~--~~kL~dfg~~~~~~~~~~~~~~~~~  180 (292)
T cd06658         106 LTDIVTHTRMNEEQIATVCLSVLRALSYLH---NQGVIHRDIKSDSILLTSDG--RIKLSDFGFCAQVSKEVPKRKSLVG  180 (292)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCC--CEEEccCcchhhcccccccCceeec
Confidence            999985  4789999999999999999999   55899999999999998764  47889999764321      12357


Q ss_pred             CcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHH
Q 002105          840 SSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEI  919 (966)
Q Consensus       840 ~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  919 (966)
                      +..|+|||+..+..++.++|||||||++|||++|+.||..... ...+ ......         ..+......    ...
T Consensus       181 ~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~-~~~~-~~~~~~---------~~~~~~~~~----~~~  245 (292)
T cd06658         181 TPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPP-LQAM-RRIRDN---------LPPRVKDSH----KVS  245 (292)
T ss_pred             CccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-HHHH-HHHHhc---------CCCcccccc----ccC
Confidence            8899999999888899999999999999999999999864311 1111 111110         111111100    111


Q ss_pred             HHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          920 VEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       920 ~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      ..+.+++..|++.||.+|||++|+++.
T Consensus       246 ~~~~~li~~~l~~~P~~Rpt~~~il~~  272 (292)
T cd06658         246 SVLRGFLDLMLVREPSQRATAQELLQH  272 (292)
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHhhC
Confidence            245567778999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.98  E-value=1.4e-31  Score=289.91  Aligned_cols=238  Identities=17%  Similarity=0.249  Sum_probs=180.4

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCH
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL  768 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L  768 (966)
                      ..+|+|++|.||+|+...++..||+|.+..........+.+|+..+.+ ++||||+++++++..++..|+||||+++|+|
T Consensus        15 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~-l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L   93 (267)
T cd06645          15 QRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKD-CKHSNIVAYFGSYLRRDKLWICMEFCGGGSL   93 (267)
T ss_pred             HHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHh-CCCCCeeeEEEEEEeCCEEEEEEeccCCCcH
Confidence            346899999999999988899999998765433333446667766666 6999999999999999999999999999999


Q ss_pred             HHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CCCcC
Q 002105          769 SEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SKSIN  839 (966)
Q Consensus       769 ~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~~~~  839 (966)
                      .++++   .+++.+...++.|++.|++|||   ..+++||||||+||+++.+.  .+++.|||.+....      ....|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nili~~~~--~~~l~dfg~~~~~~~~~~~~~~~~~  168 (267)
T cd06645          94 QDIYHVTGPLSESQIAYVSRETLQGLYYLH---SKGKMHRDIKGANILLTDNG--HVKLADFGVSAQITATIAKRKSFIG  168 (267)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCC--CEEECcceeeeEccCcccccccccC
Confidence            99886   4789999999999999999999   45899999999999998654  47888999875322      22367


Q ss_pred             CcccccccccC---CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchH
Q 002105          840 SSAYVAPETKE---SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ  916 (966)
Q Consensus       840 ~~~y~aPE~~~---~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  916 (966)
                      ++.|+|||++.   ...++.++|||||||++|||++|+.|+...... ..+....    .. ..   ..+..... ....
T Consensus       169 ~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~-~~~~~~~----~~-~~---~~~~~~~~-~~~~  238 (267)
T cd06645         169 TPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPM-RALFLMT----KS-NF---QPPKLKDK-MKWS  238 (267)
T ss_pred             cccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccch-hhHHhhh----cc-CC---CCCccccc-CCCC
Confidence            88999999874   456889999999999999999999998543211 1110100    00 00   11111100 0011


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          917 NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       917 ~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         ..+.+++.+|++.+|++||++++|++
T Consensus       239 ---~~~~~li~~~l~~~P~~R~~~~~ll~  264 (267)
T cd06645         239 ---NSFHHFVKMALTKNPKKRPTAEKLLQ  264 (267)
T ss_pred             ---HHHHHHHHHHccCCchhCcCHHHHhc
Confidence               24567888999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.98  E-value=2e-31  Score=298.61  Aligned_cols=244  Identities=20%  Similarity=0.332  Sum_probs=185.1

Q ss_pred             cccCCCCCccEEEEEEEecC-------CcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLAN-------DMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~-------~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      ...+|+|++|.||+|+....       +..||+|.+.... ....+++..|+..+.++.+|||||+++++|..++..++|
T Consensus        17 ~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv   96 (334)
T cd05100          17 GKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVL   96 (334)
T ss_pred             cceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCCceEEE
Confidence            44579999999999986432       2367888765322 222346778888777744899999999999999999999


Q ss_pred             EEccCCCCHHHHHHc-------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCc
Q 002105          760 YEYIEGKELSEVLRN-------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEP  820 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~-------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~  820 (966)
                      |||+++|+|.+++..                   ++|.++..++.|++.||+|||   ..+|+||||||+||+++.+.  
T Consensus        97 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~givH~dlkp~Nill~~~~--  171 (334)
T cd05100          97 VEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLA---SQKCIHRDLAARNVLVTEDN--  171 (334)
T ss_pred             EecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---HCCeeccccccceEEEcCCC--
Confidence            999999999999852                   678899999999999999999   56999999999999998654  


Q ss_pred             eEEEeccccceecCC--------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHH
Q 002105          821 HLRLSVPGLAYCTDS--------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWA  891 (966)
Q Consensus       821 ~~~~~~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~  891 (966)
                      .++++|||.+.....        ...++..|||||+..+..++.++|||||||++|||++ |..||....  .+   ++.
T Consensus       172 ~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~--~~---~~~  246 (334)
T cd05100         172 VMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP--VE---ELF  246 (334)
T ss_pred             cEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCC--HH---HHH
Confidence            578899998754221        1223457999999999999999999999999999998 888876431  11   222


Q ss_pred             HHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          892 RYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       892 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      ..........      ....      ...++.+++.+|++.+|++||+|.|+++.|+++...
T Consensus       247 ~~~~~~~~~~------~~~~------~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~~  296 (334)
T cd05100         247 KLLKEGHRMD------KPAN------CTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVLTV  296 (334)
T ss_pred             HHHHcCCCCC------CCCC------CCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHhhh
Confidence            2111111100      0111      123567788999999999999999999999986543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.98  E-value=2.7e-32  Score=282.46  Aligned_cols=234  Identities=19%  Similarity=0.279  Sum_probs=184.5

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccc---hHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSS---FWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~---~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ....|+|.+|.|-+|+....|+.||||-+.+..-.+.++   ..+|++.++. ++||||+++|++|+..+.+.|||||..
T Consensus        58 ~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSs-LNHPhII~IyEVFENkdKIvivMEYaS  136 (668)
T KOG0611|consen   58 TETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSS-LNHPHIIQIYEVFENKDKIVIVMEYAS  136 (668)
T ss_pred             HHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhh-cCCCceeehhhhhcCCceEEEEEEecC
Confidence            345799999999999998999999999876543333333   4677777777 799999999999999999999999999


Q ss_pred             CCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-----CCC
Q 002105          765 GKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-----DSK  836 (966)
Q Consensus       765 ~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-----~~~  836 (966)
                      +|+|.+|+.   .++..+.+.++.||..|+.|+|   ..+|+|||+|-+|||+|.+..  +|+.|||+....     -..
T Consensus       137 ~GeLYDYiSer~~LsErEaRhfFRQIvSAVhYCH---knrVvHRDLKLENILLD~N~N--iKIADFGLSNly~~~kfLqT  211 (668)
T KOG0611|consen  137 GGELYDYISERGSLSEREARHFFRQIVSAVHYCH---KNRVVHRDLKLENILLDQNNN--IKIADFGLSNLYADKKFLQT  211 (668)
T ss_pred             CccHHHHHHHhccccHHHHHHHHHHHHHHHHHHh---hccceecccchhheeecCCCC--eeeeccchhhhhccccHHHH
Confidence            999999995   4999999999999999999999   558999999999999997655  688999987542     235


Q ss_pred             CcCCcccccccccCCCCC-CCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          837 SINSSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~-~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      .+|+|-|.+||++.+.+| ++.+|-||+||+||-|+.|..||++.  ++..+   +++.-. +..   ..|.-..     
T Consensus       212 FCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~--Dhk~l---vrQIs~-GaY---rEP~~PS-----  277 (668)
T KOG0611|consen  212 FCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGR--DHKRL---VRQISR-GAY---REPETPS-----  277 (668)
T ss_pred             hcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCc--hHHHH---HHHhhc-ccc---cCCCCCc-----
Confidence            689999999999999998 46899999999999999999999864  23322   222111 111   2221111     


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                           ....++.+.+..+|++|.|+.||+.-
T Consensus       278 -----dA~gLIRwmLmVNP~RRATieDiAsH  303 (668)
T KOG0611|consen  278 -----DASGLIRWMLMVNPERRATIEDIASH  303 (668)
T ss_pred             -----hHHHHHHHHHhcCcccchhHHHHhhh
Confidence                 12223445566899999999999753

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.98  E-value=6.4e-32  Score=297.23  Aligned_cols=237  Identities=17%  Similarity=0.273  Sum_probs=185.2

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|.|++|.||+++...++..||+|++........+.+.+|+..+.+ ++||||+++++++..++..|+||||+++++
T Consensus        26 ~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~-l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~  104 (297)
T cd06659          26 YIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRD-YQHQNVVEMYKSYLVGEELWVLMEFLQGGA  104 (297)
T ss_pred             hhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHh-CCCCchhhhhhheeeCCeEEEEEecCCCCC
Confidence            3457899999999999988899999999865444444557778777777 699999999999999999999999999999


Q ss_pred             HHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCCCcC
Q 002105          768 LSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSKSIN  839 (966)
Q Consensus       768 L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~~~~  839 (966)
                      |.+++.  .+++.....++.|++.||+|||   ..+++||||||+||+++.+.  .++++|+|++...      .....+
T Consensus       105 L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~dl~p~Nill~~~~--~~kL~dfg~~~~~~~~~~~~~~~~~  179 (297)
T cd06659         105 LTDIVSQTRLNEEQIATVCESVLQALCYLH---SQGVIHRDIKSDSILLTLDG--RVKLSDFGFCAQISKDVPKRKSLVG  179 (297)
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHeEEccCC--cEEEeechhHhhcccccccccceec
Confidence            999886  4789999999999999999999   56899999999999998654  5788999976432      122457


Q ss_pred             CcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHH
Q 002105          840 SSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEI  919 (966)
Q Consensus       840 ~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  919 (966)
                      +..|+|||+..+..++.++|||||||++|||++|+.||..... .+.. ....    ......+.   .....      .
T Consensus       180 ~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~-~~~~-~~~~----~~~~~~~~---~~~~~------~  244 (297)
T cd06659         180 TPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSP-VQAM-KRLR----DSPPPKLK---NAHKI------S  244 (297)
T ss_pred             CccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-HHHH-HHHh----ccCCCCcc---ccCCC------C
Confidence            8899999999988899999999999999999999999864321 1111 1111    00000000   00011      1


Q ss_pred             HHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          920 VEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       920 ~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .++.+++.+|++.+|++||+++|+++
T Consensus       245 ~~l~~~i~~~l~~~P~~Rps~~~ll~  270 (297)
T cd06659         245 PVLRDFLERMLTREPQERATAQELLD  270 (297)
T ss_pred             HHHHHHHHHHhcCCcccCcCHHHHhh
Confidence            24556778999999999999999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.98  E-value=7.9e-32  Score=295.35  Aligned_cols=242  Identities=18%  Similarity=0.300  Sum_probs=181.5

Q ss_pred             cccCCCCCccEEEEEEEec-----CCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLA-----NDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~-----~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ...+|+|++|.||+|....     .+..||+|.+...... ....+..|+..+.+ ++||||+++++++...+..++|||
T Consensus        11 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~lv~e   89 (288)
T cd05061          11 LRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKG-FTCHHVVRLLGVVSKGQPTLVVME   89 (288)
T ss_pred             eeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHh-CCCCCeeeEEEEEcCCCCcEEEEe
Confidence            4567999999999987542     3457899976533221 22346667666666 799999999999999999999999


Q ss_pred             ccCCCCHHHHHHc-------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccc
Q 002105          762 YIEGKELSEVLRN-------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPG  828 (966)
Q Consensus       762 y~~~g~L~~~l~~-------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~  828 (966)
                      |+++|+|.++++.             .++....+++.|++.||+|||   +.+|+||||||+||+++++.  .++++|||
T Consensus        90 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dikp~nili~~~~--~~~L~Dfg  164 (288)
T cd05061          90 LMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDF--TVKIGDFG  164 (288)
T ss_pred             CCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCCChheEEEcCCC--cEEECcCC
Confidence            9999999999963             246677889999999999999   56999999999999999654  57889999


Q ss_pred             cceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCc
Q 002105          829 LAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCH  899 (966)
Q Consensus       829 ~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~  899 (966)
                      ++....        ....++..|+|||+..+..++.++|||||||++|||++ |+.|+....  .+.+.+..   .....
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~--~~~~~~~~---~~~~~  239 (288)
T cd05061         165 MTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLS--NEQVLKFV---MDGGY  239 (288)
T ss_pred             ccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHH---HcCCC
Confidence            865321        12234667999999998899999999999999999999 788886431  11111111   11110


Q ss_pred             ccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          900 LDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       900 ~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      .      ....      ....++.+++.+|++.+|++||||.|+++.|++.+.
T Consensus       240 ~------~~~~------~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~~  280 (288)
T cd05061         240 L------DQPD------NCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLH  280 (288)
T ss_pred             C------CCCC------CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhcC
Confidence            0      0011      112357778889999999999999999999988443

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.98  E-value=4.7e-32  Score=296.51  Aligned_cols=245  Identities=20%  Similarity=0.311  Sum_probs=183.7

Q ss_pred             cccCCCCCccEEEEEEE----ecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecC--CeeEEEE
Q 002105          688 LTSRGKKGVSSSYKVRS----LANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--KAAYLVY  760 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~----~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--~~~~lv~  760 (966)
                      +..+|+|++|.||.++.    ..++..||+|++.... ......+.+|+..+.+ ++||||+++++++...  ...++||
T Consensus         9 ~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~~~lv~   87 (284)
T cd05079           9 IRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRN-LYHENIVKYKGICTEDGGNGIKLIM   87 (284)
T ss_pred             ceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHh-CCCCCeeeeeeEEecCCCCceEEEE
Confidence            44579999999999874    3567889999875432 2223457788887777 6999999999999875  5689999


Q ss_pred             EccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          761 EYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       761 Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      ||+++|+|.+++.    .++|.++..++.|++.||+|||   ..+++||||||+||+++.+.  .+++.|||.+....  
T Consensus        88 e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH---~~gi~H~dlkp~Nil~~~~~--~~~l~dfg~~~~~~~~  162 (284)
T cd05079          88 EFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEH--QVKIGDFGLTKAIETD  162 (284)
T ss_pred             EccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccchheEEEcCCC--CEEECCCccccccccC
Confidence            9999999999985    3799999999999999999999   56999999999999998654  47889999875321  


Q ss_pred             -------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc----------hhhHHHHHHHhhcc
Q 002105          835 -------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV----------HESIVEWARYCYSD  897 (966)
Q Consensus       835 -------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~----------~~~~~~~~~~~~~~  897 (966)
                             ....++..|+|||+..+..++.++|||||||++|||+|++.|.......          ......+.......
T Consensus       163 ~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (284)
T cd05079         163 KEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEG  242 (284)
T ss_pred             ccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHHcC
Confidence                   1223456799999998888999999999999999999988765322110          00000111110001


Q ss_pred             CcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 002105          898 CHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESC  950 (966)
Q Consensus       898 ~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~  950 (966)
                      ...     + ...      ....++.+++.+|++.+|++||++.||++.++++
T Consensus       243 ~~~-----~-~~~------~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         243 KRL-----P-RPP------NCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             ccC-----C-CCC------CCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            000     0 001      1123677888999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.98  E-value=2.3e-31  Score=292.25  Aligned_cols=238  Identities=17%  Similarity=0.285  Sum_probs=183.3

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|.|++|.||+|+...++..+|+|.+........+.+..|+..+.+ ++||||+++++++..++..++||||+++|
T Consensus        16 i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   94 (292)
T cd06644          16 IIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILAT-CNHPYIVKLLGAFYWDGKLWIMIEFCPGG   94 (292)
T ss_pred             hhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHh-CCCCcEeeeEEEEEeCCeEEEEEecCCCC
Confidence            34557899999999999988899999999865544445567788887777 69999999999999999999999999999


Q ss_pred             CHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CC
Q 002105          767 ELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SK  836 (966)
Q Consensus       767 ~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~  836 (966)
                      +|..++.    .+++..+..++.|++.|++|||   ..+++||||||+||+++.+.  .+++.|||.+....      ..
T Consensus        95 ~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~Nili~~~~--~~kl~dfg~~~~~~~~~~~~~~  169 (292)
T cd06644          95 AVDAIMLELDRGLTEPQIQVICRQMLEALQYLH---SMKIIHRDLKAGNVLLTLDG--DIKLADFGVSAKNVKTLQRRDS  169 (292)
T ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHh---cCCeeecCCCcceEEEcCCC--CEEEccCccceeccccccccce
Confidence            9988774    3799999999999999999999   56999999999999998654  47889999765321      12


Q ss_pred             CcCCcccccccccC-----CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCC
Q 002105          837 SINSSAYVAPETKE-----SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH  911 (966)
Q Consensus       837 ~~~~~~y~aPE~~~-----~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  911 (966)
                      ..+++.|+|||++.     ...++.++|||||||++|||+||+.|+.... .......+    ... .     .|.... 
T Consensus       170 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~-~~~~~~~~----~~~-~-----~~~~~~-  237 (292)
T cd06644         170 FIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELN-PMRVLLKI----AKS-E-----PPTLSQ-  237 (292)
T ss_pred             ecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCcccc-HHHHHHHH----hcC-C-----CccCCC-
Confidence            35678999999874     3456889999999999999999999986431 11111111    110 0     010000 


Q ss_pred             CcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          912 VSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       912 ~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .   .....++.+++.+||+.+|++||++.||++
T Consensus       238 ~---~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  268 (292)
T cd06644         238 P---SKWSMEFRDFLKTALDKHPETRPSAAQLLE  268 (292)
T ss_pred             C---cccCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence            0   011134667888999999999999999975

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=3.6e-31  Score=285.94  Aligned_cols=236  Identities=18%  Similarity=0.289  Sum_probs=182.1

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc-----cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-----TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-----~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ..+|+|++|.||++....++..+|+|.+......     ..+.+.+|+..+.+ ++||||+++++++.+++..++||||+
T Consensus         8 ~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~v~e~~   86 (263)
T cd06625           8 KLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKN-LQHERIVQYYGCLRDDETLSIFMEYM   86 (263)
T ss_pred             ceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHh-CCCCCeeeeEEEEccCCeEEEEEEEC
Confidence            4568889999999998888999999987643211     12346677777766 79999999999999999999999999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      ++++|.+++.   .+++....+++.+++.|++|||   ..+|+||||||+||+++++.  .++++|+|.+....      
T Consensus        87 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nilv~~~~--~~~l~dfg~~~~~~~~~~~~  161 (263)
T cd06625          87 PGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLH---SNMIVHRDIKGANILRDSAG--NVKLGDFGASKRLQTICSSG  161 (263)
T ss_pred             CCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCC--CEEEeecccceecccccccc
Confidence            9999999986   3788889999999999999999   56999999999999998654  47888999875321      


Q ss_pred             ---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCC
Q 002105          835 ---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH  911 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  911 (966)
                         ....++..|+|||+..+..++.++|||||||++|||++|+.||..... .... .+..   ...     ..+.+...
T Consensus       162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~-~~~~-~~~~---~~~-----~~~~~~~~  231 (263)
T cd06625         162 TGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEA-MAAI-FKIA---TQP-----TNPQLPSH  231 (263)
T ss_pred             ccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccch-HHHH-HHHh---ccC-----CCCCCCcc
Confidence               123467789999999998899999999999999999999999864311 1111 1110   000     01111111


Q ss_pred             CcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          912 VSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       912 ~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      .      ..++.+++.+||+.+|.+|||+.|+++.
T Consensus       232 ~------~~~~~~li~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         232 V------SPDARNFLRRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             C------CHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence            1      1245667789999999999999998763

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.98  E-value=7.5e-32  Score=305.46  Aligned_cols=190  Identities=22%  Similarity=0.393  Sum_probs=156.8

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--c-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--I-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      +.....+|+|++|.||+++...++..+|+|.+.....  . ..+.+..|.. +.+.++|||||++++++.+++..|+|||
T Consensus        45 y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~-i~~~~~hp~iv~~~~~~~~~~~~~lv~E  123 (371)
T cd05622          45 YEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERD-IMAFANSPWVVQLFYAFQDDRYLYMVME  123 (371)
T ss_pred             cEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHH-HHHhCCCCCCCeEEEEEEcCCEEEEEEc
Confidence            4555667999999999999988999999998864321  1 1222444444 4444799999999999999999999999


Q ss_pred             ccCCCCHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          762 YIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       762 y~~~g~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      |+++|+|.++++.  ++......++.||+.||+|||   +.+|+||||||+||+++.+.  .++++|||++....     
T Consensus       124 y~~gg~L~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NIll~~~~--~ikL~DfG~a~~~~~~~~~  198 (371)
T cd05622         124 YMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSG--HLKLADFGTCMKMNKEGMV  198 (371)
T ss_pred             CCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HCCEEeCCCCHHHEEECCCC--CEEEEeCCceeEcCcCCcc
Confidence            9999999999864  678888889999999999999   56999999999999998654  57899999875422     


Q ss_pred             --CCCcCCcccccccccCCC----CCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          835 --SKSINSSAYVAPETKESK----DITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       835 --~~~~~~~~y~aPE~~~~~----~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                        ....||+.|||||++...    .++.++|||||||++|||++|+.||...
T Consensus       199 ~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  250 (371)
T cd05622         199 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  250 (371)
T ss_pred             cccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCC
Confidence              234689999999998654    3789999999999999999999999754

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.98  E-value=2.9e-31  Score=295.16  Aligned_cols=184  Identities=22%  Similarity=0.414  Sum_probs=149.6

Q ss_pred             ccCCCCCccEEEEEEEe--cCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEec--CCeeEEEEEccC
Q 002105          689 TSRGKKGVSSSYKVRSL--ANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS--EKAAYLVYEYIE  764 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~--~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~--~~~~~lv~Ey~~  764 (966)
                      ..+|+|+||.||+|+..  .++..+|+|++....  ....+.+|+..+.+ ++|||||++++++..  +...++||||++
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07868           7 CKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG--ISMSACREIALLRE-LKHPNVISLQKVFLSHADRKVWLLFDYAE   83 (317)
T ss_pred             cccccCCCeEEEEEEEccCCCCceEEEEEECCCC--CcHHHHHHHHHHHh-cCCCCCcceeeeEecCCCcEEEEEEeccC
Confidence            35799999999999964  356789999875432  23346778887777 799999999999864  456899999997


Q ss_pred             CCCHHHHHH------------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC--CCceEEEeccccc
Q 002105          765 GKELSEVLR------------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK--DEPHLRLSVPGLA  830 (966)
Q Consensus       765 ~g~L~~~l~------------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~--~~~~~~~~~~~~~  830 (966)
                       ++|.+++.            .+++.....++.||+.||+|||   +.+|+||||||+|||++.+  ....++++|||++
T Consensus        84 -~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a  159 (317)
T cd07868          84 -HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFA  159 (317)
T ss_pred             -CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHH---hCCEEcCCCCHHHEEEecCCCCcCcEEEeecCce
Confidence             58888764            3778888999999999999999   5689999999999999532  3456899999988


Q ss_pred             eecC---------CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCC
Q 002105          831 YCTD---------SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADA  879 (966)
Q Consensus       831 ~~~~---------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~  879 (966)
                      ....         ....+|+.|+|||++.+ ..++.++||||+||++|||+||++||..
T Consensus       160 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~  218 (317)
T cd07868         160 RLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC  218 (317)
T ss_pred             eccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccC
Confidence            5421         23467889999999876 4589999999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.98  E-value=2.1e-31  Score=295.01  Aligned_cols=251  Identities=20%  Similarity=0.315  Sum_probs=182.1

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .....+|+|++|.||+|+...++..||+|++..... .....+.+|+..+.+ ++||||+++++++..++..++||||++
T Consensus         9 ~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~   87 (309)
T cd07872           9 IKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKD-LKHANIVTLHDIVHTDKSLTLVFEYLD   87 (309)
T ss_pred             EEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHh-CCCCCcceEEEEEeeCCeEEEEEeCCC
Confidence            344567999999999999988899999999864332 223356778877777 799999999999999999999999998


Q ss_pred             CCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          765 GKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       765 ~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      + +|.+++..    +++.....++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||.+....      
T Consensus        88 ~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~dlkp~Nill~~~~--~~kl~Dfg~~~~~~~~~~~~  161 (309)
T cd07872          88 K-DLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCH---RRKVLHRDLKPQNLLINERG--ELKLADFGLARAKSVPTKTY  161 (309)
T ss_pred             C-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCC--CEEECccccceecCCCcccc
Confidence            5 88888753    788889999999999999999   56999999999999999654  47889999875421      


Q ss_pred             CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccc---------c
Q 002105          835 SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTW---------V  904 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~  904 (966)
                      ....+++.|+|||++.+ ..++.++|||||||++|||+||+.||.+.... +......+ .........|         .
T Consensus       162 ~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  239 (309)
T cd07872         162 SNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVE-DELHLIFR-LLGTPTEETWPGISSNDEFK  239 (309)
T ss_pred             ccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHH-HhCCCCHHHHhhhcchhhhh
Confidence            22356889999998764 56889999999999999999999999754211 11101100 0000000000         0


Q ss_pred             c---ccccCC--CcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          905 D---PFIRGH--VSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       905 d---~~~~~~--~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +   |.....  .......-.+..+++.+|++.||.+|||++|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~  285 (309)
T cd07872         240 NYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMK  285 (309)
T ss_pred             hhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhc
Confidence            0   000000  0000001124567888999999999999999986

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.98  E-value=6.3e-32  Score=307.19  Aligned_cols=247  Identities=19%  Similarity=0.274  Sum_probs=181.2

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCC-----eeEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK-----AAYLVY  760 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~-----~~~lv~  760 (966)
                      ...+|+|++|.||+++...++..||+|++....  ....+.+.+|+..+.+ ++|||||++++++..++     ..|+||
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~~~~~~lv~   83 (372)
T cd07853           5 DRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCF-FKHDNVLSALDILQPPHIDPFEEIYVVT   83 (372)
T ss_pred             cceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHh-CCCCCcCCHhheecCCCccccceEEEEe
Confidence            445799999999999998899999999985431  2223457778877777 69999999999998776     789999


Q ss_pred             EccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---
Q 002105          761 EYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       761 Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---  834 (966)
                      ||++ ++|.+++.   .+++.....++.||+.||+|||   +.+|+||||||+||+++.+.  .++++|||++....   
T Consensus        84 e~~~-~~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~Nili~~~~--~~kL~Dfg~a~~~~~~~  157 (372)
T cd07853          84 ELMQ-SDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLH---SAGILHRDIKPGNLLVNSNC--VLKICDFGLARVEEPDE  157 (372)
T ss_pred             eccc-cCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChHHEEECCCC--CEEeccccceeecccCc
Confidence            9997 68888774   3889999999999999999999   56899999999999999654  57899999876421   


Q ss_pred             ----CCCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHH------------------H
Q 002105          835 ----SKSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEW------------------A  891 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~------------------~  891 (966)
                          ....+++.|+|||++.+. .++.++|||||||++|||++|+.||.+.... +.+...                  +
T Consensus       158 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~i~~~~g~~~~~~~~~~~~~~  236 (372)
T cd07853         158 SKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPI-QQLDLITDLLGTPSLEAMRSACEGA  236 (372)
T ss_pred             cccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHH-HHHHHHHHHcCCCCHHHHHHhhHHH
Confidence                123568899999998764 4799999999999999999999999754211 111000                  0


Q ss_pred             HHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          892 RYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       892 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +........   ..|..............++.+++.+|++.||++|||+.|+++
T Consensus       237 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  287 (372)
T cd07853         237 RAHILRGPH---KPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALA  287 (372)
T ss_pred             HHHHHhCCC---CCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhc
Confidence            000000000   000000000000011235677889999999999999999975

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.98  E-value=3.9e-32  Score=282.28  Aligned_cols=248  Identities=22%  Similarity=0.294  Sum_probs=180.0

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecC--C---eeEEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--K---AAYLVYE  761 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--~---~~~lv~E  761 (966)
                      ....+|.|.||.||+|....++..|||||........    -+|...+.+ ++|||||++.-+|...  +   ...+|||
T Consensus        28 ~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~k----nrEl~im~~-l~HpNIV~L~~~f~~~~~~d~~~lnlVle  102 (364)
T KOG0658|consen   28 AVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYK----NRELQIMRK-LDHPNIVRLLYFFSSSTESDEVYLNLVLE  102 (364)
T ss_pred             eeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcC----cHHHHHHHh-cCCcCeeeEEEEEEecCCCchhHHHHHHH
Confidence            3445688899999999999999999999987544322    345555555 7999999999888642  2   3457999


Q ss_pred             ccCCCCHHHHHHc-------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          762 YIEGKELSEVLRN-------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       762 y~~~g~L~~~l~~-------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      ||| .+|.++++.       ++-....-+..||.+||+|||   ..+|+||||||.|+|+|.+ ...+|++|||.|+...
T Consensus       103 ymP-~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh---~~~IcHRDIKPqNlLvD~~-tg~LKicDFGSAK~L~  177 (364)
T KOG0658|consen  103 YMP-ETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLH---SHGICHRDIKPQNLLVDPD-TGVLKICDFGSAKVLV  177 (364)
T ss_pred             hch-HHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHH---hcCcccCCCChheEEEcCC-CCeEEeccCCcceeec
Confidence            999 599999873       444455668899999999999   4699999999999999964 5779999999987643


Q ss_pred             CCC-----cCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhh-c--------cCc
Q 002105          835 SKS-----INSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCY-S--------DCH  899 (966)
Q Consensus       835 ~~~-----~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~-~--------~~~  899 (966)
                      ...     .-|..|.|||.+.+ ..|+.+.||||.|||+.||+-|++-|.++.+... +++.++..= +        ...
T Consensus       178 ~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQ-L~eIik~lG~Pt~e~I~~mn~~  256 (364)
T KOG0658|consen  178 KGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQ-LVEIIKVLGTPTREDIKSMNPN  256 (364)
T ss_pred             cCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHH-HHHHHHHhCCCCHHHHhhcCcc
Confidence            222     34668999997654 6799999999999999999999999988654332 223333210 0        011


Q ss_pred             ccccccccccCCCc-c--hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          900 LDTWVDPFIRGHVS-S--IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       900 ~~~~~d~~~~~~~~-~--~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ....-.|.+....- +  ......+.++++.++++.+|.+|.++.|++.
T Consensus       257 y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~  305 (364)
T KOG0658|consen  257 YTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALA  305 (364)
T ss_pred             cccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhc
Confidence            11112233322210 0  0123346778889999999999999998863

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.98  E-value=1.9e-31  Score=306.88  Aligned_cols=179  Identities=18%  Similarity=0.211  Sum_probs=153.1

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .....+|+|++|.||++++...+..||||+..      ...+.+|+..+.+ ++|||||++++++..++..++||||+. 
T Consensus       172 ~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~------~~~~~~E~~iL~~-L~HpnIv~l~~~~~~~~~~~lv~e~~~-  243 (461)
T PHA03211        172 AIHRALTPGSEGCVFESSHPDYPQRVVVKAGW------YASSVHEARLLRR-LSHPAVLALLDVRVVGGLTCLVLPKYR-  243 (461)
T ss_pred             EEEEEEccCCCeEEEEEEECCCCCEEEEeccc------ccCHHHHHHHHHH-CCCCCCCcEEEEEEECCEEEEEEEccC-
Confidence            34455789999999999998889999999632      2346778877777 799999999999999999999999996 


Q ss_pred             CCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-------
Q 002105          766 KELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------  834 (966)
Q Consensus       766 g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-------  834 (966)
                      |+|.+++.    .++|.++..++.|+++||+|||   ..+||||||||+|||++.+.  .++++|||++....       
T Consensus       244 ~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDLKP~NILl~~~~--~vkL~DFGla~~~~~~~~~~~  318 (461)
T PHA03211        244 SDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIH---GEGIIHRDIKTENVLVNGPE--DICLGDFGAACFARGSWSTPF  318 (461)
T ss_pred             CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEEECcCCHHHEEECCCC--CEEEcccCCceeccccccccc
Confidence            78888874    3899999999999999999999   55899999999999998654  47889999875421       


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCC
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPA  877 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~  877 (966)
                       ....||+.|||||++.+..++.++|||||||++|||++|..|+
T Consensus       319 ~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~l  362 (461)
T PHA03211        319 HYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASL  362 (461)
T ss_pred             ccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCc
Confidence             1235899999999999999999999999999999999988764

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.98  E-value=2e-31  Score=286.63  Aligned_cols=235  Identities=20%  Similarity=0.331  Sum_probs=183.9

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|.|++|.||+++...++..+|+|.+.....  .+++.+|+..+.+ ++||||++++|++..++..|++|||+++++
T Consensus         8 ~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~-l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~   84 (256)
T cd06612           8 LEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQ-CDSPYIVKYYGSYFKNTDLWIVMEYCGAGS   84 (256)
T ss_pred             hhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHh-CCCCcEeeeeeeeecCCcEEEEEecCCCCc
Confidence            3456888999999999977789999998864432  4568888888877 699999999999999999999999999999


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC------CC
Q 002105          768 LSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS------KS  837 (966)
Q Consensus       768 L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~------~~  837 (966)
                      |.++++    .++|.....++.|++.|++|||   ..+++||||+|+||+++.+.  .+++.|+|.+.....      ..
T Consensus        85 L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh---~~~i~H~dl~~~ni~~~~~~--~~~l~dfg~~~~~~~~~~~~~~~  159 (256)
T cd06612          85 VSDIMKITNKTLTEEEIAAILYQTLKGLEYLH---SNKKIHRDIKAGNILLNEEG--QAKLADFGVSGQLTDTMAKRNTV  159 (256)
T ss_pred             HHHHHHhCccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEECCCC--cEEEcccccchhcccCccccccc
Confidence            999985    3789999999999999999999   55899999999999999765  468899988754221      23


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      .++..|+|||+..+..++.++|||||||++|||+||+.|+...... .....     ....     ..+...    ....
T Consensus       160 ~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~-~~~~~-----~~~~-----~~~~~~----~~~~  224 (256)
T cd06612         160 IGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPM-RAIFM-----IPNK-----PPPTLS----DPEK  224 (256)
T ss_pred             cCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchh-hhhhh-----hccC-----CCCCCC----chhh
Confidence            4678999999999889999999999999999999999998643211 11100     0000     000000    0011


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ...++.+++.+|++.+|++|||+.||++
T Consensus       225 ~~~~~~~~i~~~l~~~P~~Rps~~~il~  252 (256)
T cd06612         225 WSPEFNDFVKKCLVKDPEERPSAIQLLQ  252 (256)
T ss_pred             cCHHHHHHHHHHHhcChhhCcCHHHHhc
Confidence            1134667788999999999999999875

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.98  E-value=3.7e-32  Score=303.73  Aligned_cols=245  Identities=20%  Similarity=0.319  Sum_probs=192.6

Q ss_pred             ccccccCCCCCccEEEEEEEecCCc----EEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDM----QFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~----~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      ......+|.|.||.||||.+.+.|.    +||+|.+..... ....++.+|.-.+++ ++|||+++++|+|.... +.||
T Consensus       698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~mas-ldHpnl~RLLgvc~~s~-~qlv  775 (1177)
T KOG1025|consen  698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMAS-LDHPNLLRLLGVCMLST-LQLV  775 (1177)
T ss_pred             hhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhc-CCCchHHHHhhhcccch-HHHH
Confidence            3455677999999999999988875    577777765433 345678888888888 79999999999998766 8899


Q ss_pred             EEccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-
Q 002105          760 YEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-  834 (966)
                      ++||+.|.|.+|++    ++--+..+.+..|||+||.|||   ...+|||||-+.|||+.+-  .++|+.|||++.... 
T Consensus       776 tq~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe---~qrlVHrdLaaRNVLVksP--~hvkitdfgla~ll~~  850 (1177)
T KOG1025|consen  776 TQLMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLE---EQRLVHRDLAARNVLVKSP--NHVKITDFGLAKLLAP  850 (1177)
T ss_pred             HHhcccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH---hcchhhhhhhhhheeecCC--CeEEEEecchhhccCc
Confidence            99999999999997    3667778899999999999999   5589999999999999853  468899999886421 


Q ss_pred             -C------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhcc-Cccccccc
Q 002105          835 -S------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSD-CHLDTWVD  905 (966)
Q Consensus       835 -~------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d  905 (966)
                       .      .....+.|||-|.+....|+.++|||||||++||++| |..|+++..  .+.+    ...+++ .++   -.
T Consensus       851 d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~--~~eI----~dlle~geRL---sq  921 (1177)
T KOG1025|consen  851 DEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIP--AEEI----PDLLEKGERL---SQ  921 (1177)
T ss_pred             ccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCC--HHHh----hHHHhccccC---CC
Confidence             1      1123457999999999999999999999999999999 999987642  1112    122221 111   11


Q ss_pred             ccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 002105          906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS  954 (966)
Q Consensus       906 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~  954 (966)
                      |         ......+..++.+||..|++.||++++...+..++.|.+
T Consensus       922 P---------piCtiDVy~~mvkCwmid~~~rp~fkel~~~fs~~ardp  961 (1177)
T KOG1025|consen  922 P---------PICTIDVYMVMVKCWMIDADSRPTFKELAEEFSRMARDP  961 (1177)
T ss_pred             C---------CCccHHHHHHHHHHhccCcccCccHHHHHHHHHHHhcCc
Confidence            1         233456778899999999999999999999998876654

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.98  E-value=1.6e-31  Score=287.46  Aligned_cols=236  Identities=21%  Similarity=0.328  Sum_probs=183.7

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ...+|.|++|.||++....++..+|+|++.... ....+.+..|+..+.+ ++||||+++++++..++..|+||||+++|
T Consensus         5 ~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   83 (255)
T cd08219           5 LRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAK-MKHPNIVAFKESFEADGHLYIVMEYCDGG   83 (255)
T ss_pred             EEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHh-CCCCCcceEEEEEEECCEEEEEEeeCCCC
Confidence            345789999999999998899999999875332 2233456677776666 79999999999999999999999999999


Q ss_pred             CHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------C
Q 002105          767 ELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------S  835 (966)
Q Consensus       767 ~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~  835 (966)
                      +|.+++..     +++.....++.+++.||+|||   ..+|+|+||||+||+++++.  .+++.|||.+....      .
T Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dl~p~nili~~~~--~~~l~dfg~~~~~~~~~~~~~  158 (255)
T cd08219          84 DLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIH---EKRVLHRDIKSKNIFLTQNG--KVKLGDFGSARLLTSPGAYAC  158 (255)
T ss_pred             cHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCcceEEECCCC--cEEEcccCcceeecccccccc
Confidence            99998852     678888999999999999999   56999999999999998654  46888999875432      1


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...+++.|+|||+..+..++.++||||||+++|||++|+.||..... ...    ....... .    ..+ +....+  
T Consensus       159 ~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~-~~~----~~~~~~~-~----~~~-~~~~~~--  225 (255)
T cd08219         159 TYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSW-KNL----ILKVCQG-S----YKP-LPSHYS--  225 (255)
T ss_pred             cccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCH-HHH----HHHHhcC-C----CCC-CCcccC--
Confidence            23578889999999988899999999999999999999999875311 111    1111111 1    111 111111  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                          .++.+++.+||+.||++||++.||+.+
T Consensus       226 ----~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         226 ----YELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             ----HHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence                245677889999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.98  E-value=2.5e-31  Score=285.02  Aligned_cols=235  Identities=23%  Similarity=0.373  Sum_probs=182.3

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCH
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL  768 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L  768 (966)
                      .+|.|++|.||++.... +..||+|++...... ....+..|+..+.+ ++||||+++++++...+..++||||+++++|
T Consensus         2 ~lg~g~~g~v~~~~~~~-~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l   79 (251)
T cd05041           2 KIGKGNFGDVYKGVLKG-NTEVAVKTCRSTLPPDLKRKFLQEAEILKQ-YDHPNIVKLIGVCVQKQPIYIVMELVPGGSL   79 (251)
T ss_pred             ccccCCCceEEEEEEeC-CCcEEEEeccccCCHHHHHHHHHHHHHHHh-CCCCCeEEEEEEEecCCCeEEEEEcCCCCcH
Confidence            36889999999999855 999999987654332 33457778877776 6999999999999999999999999999999


Q ss_pred             HHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC--------C
Q 002105          769 SEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--------K  836 (966)
Q Consensus       769 ~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~--------~  836 (966)
                      .++++.    +++.....++.+++.|++|||   ..+++||||||+||+++.+.  .+++.|+|.+.....        .
T Consensus        80 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH---~~~i~h~di~p~nili~~~~--~~~l~d~g~~~~~~~~~~~~~~~~  154 (251)
T cd05041          80 LTFLRKKKNRLTVKKLLQMSLDAAAGMEYLE---SKNCIHRDLAARNCLVGENN--VLKISDFGMSREEEGGIYTVSDGL  154 (251)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCEehhhcCcceEEEcCCC--cEEEeeccccccccCCcceecccc
Confidence            999853    688899999999999999999   55899999999999998654  578899988754321        1


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...+..|+|||++.+..++.++|||||||++|||+| |..||....  .....+...   .....   .   ...     
T Consensus       155 ~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~--~~~~~~~~~---~~~~~---~---~~~-----  218 (251)
T cd05041         155 KQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMS--NQQTRERIE---SGYRM---P---APQ-----  218 (251)
T ss_pred             CcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCC--HHHHHHHHh---cCCCC---C---CCc-----
Confidence            122456999999988899999999999999999999 788875432  111111111   00000   0   001     


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                       ....++.+++.+|++.+|++|||+.||++.|+
T Consensus       219 -~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~  250 (251)
T cd05041         219 -LCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ  250 (251)
T ss_pred             -cCCHHHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence             11235777889999999999999999999886

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.98  E-value=3.2e-31  Score=285.90  Aligned_cols=236  Identities=20%  Similarity=0.359  Sum_probs=183.3

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|.|++|.||+|.. .++..||+|++.... ...++|..|+..+.+ ++||||+++++++. .+..++||||+++|+
T Consensus        11 ~~~ig~G~~g~v~~~~~-~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~   86 (260)
T cd05067          11 VKKLGAGQFGEVWMGYY-NGHTKVAIKSLKQGS-MSPEAFLAEANLMKQ-LQHPRLVRLYAVVT-QEPIYIITEYMENGS   86 (260)
T ss_pred             eeeeccCccceEEeeec-CCCceEEEEEecCCC-CcHHHHHHHHHHHHh-cCCcCeeeEEEEEc-cCCcEEEEEcCCCCC
Confidence            44679999999999986 678899999876433 334567888877766 79999999999874 467899999999999


Q ss_pred             HHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-------C
Q 002105          768 LSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------S  835 (966)
Q Consensus       768 L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-------~  835 (966)
                      |.++++     .+++.++..++.|++.||+|||   ..+++||||||+||+++.+.  .+++.|+|.+....       .
T Consensus        87 L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH---~~~i~H~dl~p~ni~i~~~~--~~~l~dfg~~~~~~~~~~~~~~  161 (260)
T cd05067          87 LVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIE---RKNYIHRDLRAANILVSETL--CCKIADFGLARLIEDNEYTARE  161 (260)
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHHhEEEcCCC--CEEEccCcceeecCCCCccccc
Confidence            999985     3789999999999999999999   56899999999999999754  46888998875432       1


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ...++..|+|||+..+..++.++|||||||++||++| |+.||.+.. ..+.. +...   .....     + .....  
T Consensus       162 ~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~-~~~~~-~~~~---~~~~~-----~-~~~~~--  228 (260)
T cd05067         162 GAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMT-NPEVI-QNLE---RGYRM-----P-RPDNC--  228 (260)
T ss_pred             CCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCC-hHHHH-HHHH---cCCCC-----C-CCCCC--
Confidence            1234568999999988889999999999999999999 999986532 11111 1111   11000     0 11111  


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                          ..++.+++.+|++.+|++||+++++...|+.
T Consensus       229 ----~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         229 ----PEELYELMRLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             ----CHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence                1357778889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.97  E-value=2.7e-31  Score=287.62  Aligned_cols=233  Identities=21%  Similarity=0.334  Sum_probs=180.4

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccc---------cchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITT---------SSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~---------~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      .+|.|++|.||+|....++..+|+|++........         +.+..|+..+.+ ++||||+++++++.+++..++||
T Consensus         7 ~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~   85 (267)
T cd06628           7 LIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKE-LQHENIVQYLGSSLDADHLNIFL   85 (267)
T ss_pred             eeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHh-cCCCCeeeEEEEEEeCCccEEEE
Confidence            35788999999999878889999998864332211         235667777777 69999999999999999999999


Q ss_pred             EccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC--
Q 002105          761 EYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--  835 (966)
Q Consensus       761 Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~--  835 (966)
                      ||+++++|.++++.   +++.....++.|++.||+|||   ..+++||||||+||+++++.  .+++.|||.+.....  
T Consensus        86 e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lH---~~~ivH~di~p~nil~~~~~--~~~l~dfg~~~~~~~~~  160 (267)
T cd06628          86 EYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLH---NRGIIHRDIKGANILVDNKG--GIKISDFGISKKLEANS  160 (267)
T ss_pred             EecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHH---hcCcccccCCHHHEEEcCCC--CEEecccCCCccccccc
Confidence            99999999999963   788899999999999999999   55899999999999998654  468889887653221  


Q ss_pred             ----------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccc
Q 002105          836 ----------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVD  905 (966)
Q Consensus       836 ----------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  905 (966)
                                ...++..|+|||+..+..++.++|||||||++|||+||+.||..... ...+...    . .     ...
T Consensus       161 ~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-~~~~~~~----~-~-----~~~  229 (267)
T cd06628         161 LSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQ-LQAIFKI----G-E-----NAS  229 (267)
T ss_pred             ccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccH-HHHHHHH----h-c-----cCC
Confidence                      12467889999999988899999999999999999999999875311 1111110    0 0     011


Q ss_pred             ccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       906 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      |.+....      ..++.+++.+||+.||.+||++.||++
T Consensus       230 ~~~~~~~------~~~~~~li~~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         230 PEIPSNI------SSEAIDFLEKTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             CcCCccc------CHHHHHHHHHHccCCchhCcCHHHHhh
Confidence            1111111      134567778999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.97  E-value=4.2e-31  Score=288.16  Aligned_cols=244  Identities=19%  Similarity=0.307  Sum_probs=186.9

Q ss_pred             ccccCCCCCccEEEEEEEecCCc----EEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDM----QFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~----~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ....+|.|++|.||+|....+|.    .+|+|+...... ....++.+|+..+.+ ++||||++++++|.. ...++|||
T Consensus        11 ~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~-~~~~~v~e   88 (279)
T cd05057          11 KIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMAS-VDHPHVVRLLGICLS-SQVQLITQ   88 (279)
T ss_pred             EcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHh-CCCCCcceEEEEEec-CceEEEEe
Confidence            34567999999999999766654    578887654332 223457778888777 699999999999987 78899999


Q ss_pred             ccCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC--
Q 002105          762 YIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--  835 (966)
Q Consensus       762 y~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~--  835 (966)
                      |+++|+|.++++.    ++|....+++.|++.|++|||   ..+++||||||+||+++++.  .+++.|||.+.....  
T Consensus        89 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~di~p~nil~~~~~--~~kL~dfg~~~~~~~~~  163 (279)
T cd05057          89 LMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLE---EKRLVHRDLAARNVLVKTPQ--HVKITDFGLAKLLDVDE  163 (279)
T ss_pred             cCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCEEecccCcceEEEcCCC--eEEECCCcccccccCcc
Confidence            9999999999863    789999999999999999999   56999999999999998654  478899998754221  


Q ss_pred             ------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccc
Q 002105          836 ------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI  908 (966)
Q Consensus       836 ------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  908 (966)
                            ...++..|+|||......++.++|||||||++||++| |+.||....  .+.+.+...   .....   ..|  
T Consensus       164 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~--~~~~~~~~~---~~~~~---~~~--  233 (279)
T cd05057         164 KEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIP--AVEIPDLLE---KGERL---PQP--  233 (279)
T ss_pred             cceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCC--HHHHHHHHh---CCCCC---CCC--
Confidence                  1122457999999988889999999999999999999 999987532  122212221   11100   111  


Q ss_pred             cCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 002105          909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS  954 (966)
Q Consensus       909 ~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~  954 (966)
                       ..      ...++.+++.+||..+|++||++.++++.|+++.+.+
T Consensus       234 -~~------~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~~~  272 (279)
T cd05057         234 -PI------CTIDVYMVLVKCWMIDAESRPTFKELINEFSKMARDP  272 (279)
T ss_pred             -CC------CCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhCC
Confidence             01      1135667888999999999999999999999965544

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.1e-34  Score=310.56  Aligned_cols=360  Identities=28%  Similarity=0.420  Sum_probs=192.4

Q ss_pred             CEEEccCCCCc-ccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccc
Q 002105          183 QIFTLASNQLI-GSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQ  261 (966)
Q Consensus       183 ~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  261 (966)
                      +-.|+++|.++ +..|.....+++++.|.|....+. .+|++++.+.+|++|.+++|++. .+-..+..|+.|+.+.+..
T Consensus        10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~   87 (1255)
T KOG0444|consen   10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRD   87 (1255)
T ss_pred             ecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhc
Confidence            33444444444 245555555666666666655554 55666666666666666666655 2344455566666666666


Q ss_pred             cccCC-CCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccC
Q 002105          262 NKLTG-SIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEI  340 (966)
Q Consensus       262 n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  340 (966)
                      |++.. -+|..+..+..|..||||+|++. +.|..+..-.++-.|+||+|+|..+...-|.++..|-+|||++|++. .+
T Consensus        88 N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~L  165 (1255)
T KOG0444|consen   88 NNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-ML  165 (1255)
T ss_pred             cccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hc
Confidence            65532 24555556666666666666665 55666666666666666666665333334456666666666666665 45


Q ss_pred             CccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCC-CCCCCccccCccCceeeccccccCCcCChhhcCC
Q 002105          341 PSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLE-GKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRL  419 (966)
Q Consensus       341 p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  419 (966)
                      |+.+.++..|++|+||+|.+.-.--..+.++++|..|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. .+|..+-.+
T Consensus       166 PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l  244 (1255)
T KOG0444|consen  166 PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL  244 (1255)
T ss_pred             CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhh
Confidence            556666666666666666654322222233444444444443221 234555555555555555555554 344444555


Q ss_pred             CcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCccCCCCcCcccccccccccccccc-cCCCcccCcCCCCEEEc
Q 002105          420 PLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSG-TIPRSFGRLSELMQLKI  498 (966)
Q Consensus       420 ~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L  498 (966)
                      ++|+.|+||+|+|+.. ........+|++|+||.|+++.....++.++.|+.|.+.+|+++- -+|..++.+.+|.++..
T Consensus       245 ~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a  323 (1255)
T KOG0444|consen  245 RNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA  323 (1255)
T ss_pred             hhhheeccCcCceeee-eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence            5555555555555421 111222334555555555555322224455555555555555432 24555555555555555


Q ss_pred             cCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCCc
Q 002105          499 SRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQ  550 (966)
Q Consensus       499 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~  550 (966)
                      ++|++. ..|..++.|..|+.|.|++|++- .+|+.+.-++.|++|||..|.
T Consensus       324 anN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  324 ANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             hccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence            555553 45555555555555555555554 445555555555555555554

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=4.4e-31  Score=285.06  Aligned_cols=240  Identities=20%  Similarity=0.287  Sum_probs=186.3

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|.|++|.||+|....++..+|+|.+........+.+..|+..+.+ ++||||++++|++..++..++||||++++
T Consensus         7 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~-~~h~~i~~~~~~~~~~~~~~l~~e~~~~~   85 (262)
T cd06613           7 LIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKE-CRHPNIVAYFGSYLRRDKLWIVMEYCGGG   85 (262)
T ss_pred             EEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHh-CCCCChhceEEEEEeCCEEEEEEeCCCCC
Confidence            34457899999999999988888999998875544445567888887777 79999999999999999999999999999


Q ss_pred             CHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CC
Q 002105          767 ELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SK  836 (966)
Q Consensus       767 ~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~  836 (966)
                      +|.++++    .+++.+...++.|++.|++|||   ..+++||||||+||+++++.  .+++.|+|.+....      ..
T Consensus        86 ~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~ni~i~~~~--~~~l~d~g~~~~~~~~~~~~~~  160 (262)
T cd06613          86 SLQDIYQVTRGPLSELQIAYVCRETLKGLAYLH---ETGKIHRDIKGANILLTEDG--DVKLADFGVSAQLTATIAKRKS  160 (262)
T ss_pred             cHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---hCCceecCCChhhEEECCCC--CEEECccccchhhhhhhhcccc
Confidence            9999884    4788999999999999999999   55899999999999999654  46889998765422      22


Q ss_pred             CcCCcccccccccCCC---CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          837 SINSSAYVAPETKESK---DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~---~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      ..++..|+|||.....   .++.++|||||||++|||+||+.|+..... .+.........+        ..+.+.    
T Consensus       161 ~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~-~~~~~~~~~~~~--------~~~~~~----  227 (262)
T cd06613         161 FIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHP-MRALFLISKSNF--------PPPKLK----  227 (262)
T ss_pred             ccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHhccC--------CCcccc----
Confidence            3567889999998776   889999999999999999999999865321 111111111000        001110    


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .......++.+++.+||+.+|.+|||+.||+.
T Consensus       228 ~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         228 DKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             chhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            01122345678889999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.97  E-value=4.8e-31  Score=287.42  Aligned_cols=236  Identities=18%  Similarity=0.283  Sum_probs=184.7

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      +..+|.|++|.||+|....++..||+|.+.... ......+..|+..+.+ ++||||+++++++.+++..++||||+++|
T Consensus         9 ~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   87 (277)
T cd06640           9 LERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQ-CDSPYVTKYYGSYLKGTKLWIIMEYLGGG   87 (277)
T ss_pred             hhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHh-CCCCCEeeEEEEEEECCEEEEEEecCCCC
Confidence            345789999999999987788999999875432 2233457778777777 69999999999999999999999999999


Q ss_pred             CHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC------CCc
Q 002105          767 ELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS------KSI  838 (966)
Q Consensus       767 ~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~------~~~  838 (966)
                      +|.++++.  +++.....++.+++.|++|||   ..+++|+||||+||+++.+.  .+++.|+|.+.....      ...
T Consensus        88 ~L~~~i~~~~l~~~~~~~~~~~l~~~l~~lh---~~~ivH~dl~p~Nil~~~~~--~~~l~dfg~~~~~~~~~~~~~~~~  162 (277)
T cd06640          88 SALDLLRAGPFDEFQIATMLKEILKGLDYLH---SEKKIHRDIKAANVLLSEQG--DVKLADFGVAGQLTDTQIKRNTFV  162 (277)
T ss_pred             cHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCccCcCCChhhEEEcCCC--CEEEcccccceeccCCcccccccc
Confidence            99999874  788888999999999999999   56999999999999998654  468889988754221      224


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      ++..|+|||+..+..++.++|||||||++|||+||+.|+...... . .   ... ....     ..|.+.      ...
T Consensus       163 ~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~-~-~---~~~-~~~~-----~~~~~~------~~~  225 (277)
T cd06640         163 GTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPM-R-V---LFL-IPKN-----NPPTLT------GEF  225 (277)
T ss_pred             CcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChH-h-H---hhh-hhcC-----CCCCCc------hhh
Confidence            677899999998888999999999999999999999998643211 1 1   000 0000     011111      123


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      ..++.+++.+||+.+|++||++.|++..
T Consensus       226 ~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06640         226 SKPFKEFIDACLNKDPSFRPTAKELLKH  253 (277)
T ss_pred             hHHHHHHHHHHcccCcccCcCHHHHHhC
Confidence            3467788899999999999999999654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=3.2e-31  Score=299.22  Aligned_cols=182  Identities=16%  Similarity=0.226  Sum_probs=152.8

Q ss_pred             ccccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          683 TTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       683 ~~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      ..+.....+|.|++|.||+|+...++..||+|....      .....|+..+.+ ++|||||++++++..++..++||||
T Consensus        66 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~------~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~  138 (357)
T PHA03209         66 LGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQK------GTTLIEAMLLQN-VNHPSVIRMKDTLVSGAITCMVLPH  138 (357)
T ss_pred             cCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCc------cccHHHHHHHHh-CCCCCCcChhheEEeCCeeEEEEEc
Confidence            345666778999999999999987888899886321      233567776666 7999999999999999999999999


Q ss_pred             cCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          763 IEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       763 ~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      +. |+|.+++.    .++|..+..++.||+.||+|||   ..+||||||||+||+++.+.  .++++|||.+....    
T Consensus       139 ~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~--~~kl~DfG~a~~~~~~~~  212 (357)
T PHA03209        139 YS-SDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLH---AQRIIHRDVKTENIFINDVD--QVCIGDLGAAQFPVVAPA  212 (357)
T ss_pred             cC-CcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCC--CEEEecCccccccccCcc
Confidence            96 68888885    3889999999999999999999   55899999999999998654  46889999875321    


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCC
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPA  877 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~  877 (966)
                       ....||+.|+|||++.+..++.++|||||||++|||+++..|+
T Consensus       213 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~  256 (357)
T PHA03209        213 FLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTI  256 (357)
T ss_pred             cccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence             2346889999999999999999999999999999999866554

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.97  E-value=3.4e-31  Score=290.03  Aligned_cols=240  Identities=18%  Similarity=0.269  Sum_probs=180.1

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEe-----cCCeeEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR-----SEKAAYLVY  760 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~-----~~~~~~lv~  760 (966)
                      +....+|+|++|.||+++...++..+|+|+..... ....++..|+..+.++.+||||++++++|.     .++..++||
T Consensus        21 ~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~lv~   99 (286)
T cd06638          21 EIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH-DIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQLWLVL   99 (286)
T ss_pred             eeeeeeccCCCcEEEEEEECCCCceeEEEeecccc-chHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCCeEEEEE
Confidence            45566799999999999998889999999865422 223456778877777447999999999884     345789999


Q ss_pred             EccCCCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec
Q 002105          761 EYIEGKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT  833 (966)
Q Consensus       761 Ey~~~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~  833 (966)
                      ||+++|+|.++++       .+++.....++.|+++||.|||   ..+|+||||||+||+++.+..  +++.|||.+...
T Consensus       100 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nili~~~~~--~kl~dfg~~~~~  174 (286)
T cd06638         100 ELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLH---VNKTIHRDVKGNNILLTTEGG--VKLVDFGVSAQL  174 (286)
T ss_pred             eecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHH---hCCccccCCCHHhEEECCCCC--EEEccCCceeec
Confidence            9999999998874       3678888899999999999999   558999999999999997654  688899987542


Q ss_pred             C------CCCcCCcccccccccC-----CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccc
Q 002105          834 D------SKSINSSAYVAPETKE-----SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDT  902 (966)
Q Consensus       834 ~------~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  902 (966)
                      .      ....|++.|+|||++.     +..++.++|||||||++|||+||+.|+..... .......     .......
T Consensus       175 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~-~~~~~~~-----~~~~~~~  248 (286)
T cd06638         175 TSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHP-MRALFKI-----PRNPPPT  248 (286)
T ss_pred             ccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCch-hHHHhhc-----cccCCCc
Confidence            2      2235788999999875     34578899999999999999999999864311 1111010     0000001


Q ss_pred             cccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          903 WVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       903 ~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      ..+|.   ..      ..++.+++.+|++.+|++|||+.||++.
T Consensus       249 ~~~~~---~~------~~~~~~li~~~l~~~p~~Rps~~ell~~  283 (286)
T cd06638         249 LHQPE---LW------SNEFNDFIRKCLTKDYEKRPTVSDLLQH  283 (286)
T ss_pred             ccCCC---Cc------CHHHHHHHHHHccCCcccCCCHHHHhhc
Confidence            01111   11      1246678889999999999999999864

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.5e-31  Score=290.15  Aligned_cols=238  Identities=21%  Similarity=0.331  Sum_probs=183.0

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|.|++|.||++....++..+|+|..........+.|..|+..+.+ ++||||+++++++..++..|+||||+++|+
T Consensus        10 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   88 (280)
T cd06611          10 IGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSE-CKHPNIVGLYEAYFYENKLWILIEFCDGGA   88 (280)
T ss_pred             HHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHh-CCCCceeEEEEEEecCCeEEEEeeccCCCc
Confidence            4457889999999999877889999998865544444568888888877 699999999999999999999999999999


Q ss_pred             HHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CCC
Q 002105          768 LSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SKS  837 (966)
Q Consensus       768 L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~~  837 (966)
                      |.+++..    +++.....++.|++.||+|||   ..+|+||||||+||+++.+.  .+++.|+|.+....      ...
T Consensus        89 L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~nili~~~~--~~~l~d~g~~~~~~~~~~~~~~~  163 (280)
T cd06611          89 LDSIMLELERGLTEPQIRYVCRQMLEALNFLH---SHKVIHRDLKAGNILLTLDG--DVKLADFGVSAKNKSTLQKRDTF  163 (280)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEECCCC--CEEEccCccchhhccccccccee
Confidence            9999853    789999999999999999999   55899999999999998654  57888888764321      223


Q ss_pred             cCCcccccccccC-----CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          838 INSSAYVAPETKE-----SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       838 ~~~~~y~aPE~~~-----~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                      .+++.|+|||++.     ...++.++|||||||++|||++|+.||.... .......+.    .. .......|   ..+
T Consensus       164 ~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~-~~~~~~~~~----~~-~~~~~~~~---~~~  234 (280)
T cd06611         164 IGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELN-PMRVLLKIL----KS-EPPTLDQP---SKW  234 (280)
T ss_pred             ecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCC-HHHHHHHHh----cC-CCCCcCCc---ccC
Confidence            5788999999864     3457889999999999999999999986531 111111111    11 00000000   011


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                            ..++.+++..||+.+|.+||++.+|++.
T Consensus       235 ------~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (280)
T cd06611         235 ------SSSFNDFLKSCLVKDPDDRPTAAELLKH  262 (280)
T ss_pred             ------CHHHHHHHHHHhccChhhCcCHHHHhcC
Confidence                  1245667789999999999999999753

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.97  E-value=3.5e-31  Score=287.38  Aligned_cols=240  Identities=22%  Similarity=0.319  Sum_probs=181.9

Q ss_pred             ccCCCCCccEEEEEEEecC---CcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          689 TSRGKKGVSSSYKVRSLAN---DMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~---~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ..+|.|++|.||+|.....   ...||+|+..... ....+.+..|+..+.+ ++||||+++++++.. +..++||||++
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~-~~h~~i~~~~~~~~~-~~~~lv~e~~~   89 (270)
T cd05056          12 RCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQ-FDHPHIVKLIGVITE-NPVWIVMELAP   89 (270)
T ss_pred             eeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHh-CCCCchhceeEEEcC-CCcEEEEEcCC
Confidence            3468899999999987543   3468888775433 2234467788887777 699999999999875 55789999999


Q ss_pred             CCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          765 GKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       765 ~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      +|+|.+++..    ++|..+..++.+++.||+|||   ..+++||||||+||+++.+.  .+++.|+|.+....      
T Consensus        90 ~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~~H~dl~p~nili~~~~--~~~l~d~g~~~~~~~~~~~~  164 (270)
T cd05056          90 LGELRSYLQVNKYSLDLASLILYSYQLSTALAYLE---SKRFVHRDIAARNVLVSSPD--CVKLGDFGLSRYLEDESYYK  164 (270)
T ss_pred             CCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccChheEEEecCC--CeEEccCceeeeccccccee
Confidence            9999999963    799999999999999999999   56899999999999998654  57888998875421      


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                       ....++..|+|||++....++.++|||||||++||+++ |+.||..... .+.. .+..   .....      ......
T Consensus       165 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~-~~~~-~~~~---~~~~~------~~~~~~  233 (270)
T cd05056         165 ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKN-NDVI-GRIE---NGERL------PMPPNC  233 (270)
T ss_pred             cCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCH-HHHH-HHHH---cCCcC------CCCCCC
Confidence             12223457999999988889999999999999999986 9999865422 1111 1111   11100      011111


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                            ..++.+++.+|+..+|++|||+.++++.|++ ++.
T Consensus       234 ------~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~-~~~  267 (270)
T cd05056         234 ------PPTLYSLMTKCWAYDPSKRPRFTELKAQLSD-ILQ  267 (270)
T ss_pred             ------CHHHHHHHHHHcCCChhhCcCHHHHHHHHHH-HHh
Confidence                  1256677889999999999999999999998 443

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.97  E-value=5.4e-31  Score=283.38  Aligned_cols=235  Identities=21%  Similarity=0.371  Sum_probs=183.2

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|.|++|.||++.. .++..+|+|++... .....+|.+|+..+.+ ++||||+++++++......++||||+++|+
T Consensus         9 ~~~ig~g~~g~v~~~~~-~~~~~~~~k~~~~~-~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~   85 (256)
T cd05112           9 VQEIGSGQFGLVWLGYW-LEKRKVAIKTIREG-AMSEEDFIEEAQVMMK-LSHPKLVQLYGVCTERSPICLVFEFMEHGC   85 (256)
T ss_pred             EeeecCcccceEEEEEE-eCCCeEEEEECCCC-CCCHHHHHHHHHHHHh-CCCCCeeeEEEEEccCCceEEEEEcCCCCc
Confidence            34578999999999987 45778999977532 2334568888887777 699999999999999999999999999999


Q ss_pred             HHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-------C
Q 002105          768 LSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-------K  836 (966)
Q Consensus       768 L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-------~  836 (966)
                      |.++++.    ++|.....++.+++.|++|||   ..+++||||||+||+++.+  ..+++.|+|.+.....       .
T Consensus        86 L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~h~dl~p~ni~i~~~--~~~~l~d~g~~~~~~~~~~~~~~~  160 (256)
T cd05112          86 LSDYLRAQRGKFSQETLLGMCLDVCEGMAYLE---SSNVIHRDLAARNCLVGEN--QVVKVSDFGMTRFVLDDQYTSSTG  160 (256)
T ss_pred             HHHHHHhCccCCCHHHHHHHHHHHHHHHHHHH---HCCccccccccceEEEcCC--CeEEECCCcceeecccCcccccCC
Confidence            9999862    789999999999999999999   5589999999999999854  4578899987653211       1


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ..++.+|+|||+..++.++.++|||||||++|||++ |+.||....  .....+...   ....  . .+|..   .   
T Consensus       161 ~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~--~~~~~~~~~---~~~~--~-~~~~~---~---  226 (256)
T cd05112         161 TKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRS--NSEVVETIN---AGFR--L-YKPRL---A---  226 (256)
T ss_pred             CccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCC--HHHHHHHHh---CCCC--C-CCCCC---C---
Confidence            224568999999998899999999999999999998 999986432  111111111   1100  0 11111   1   


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTKTL  947 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L  947 (966)
                         ..++.+++.+||+.+|++||||.||+++|
T Consensus       227 ---~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l  255 (256)
T cd05112         227 ---SQSVYELMQHCWKERPEDRPSFSLLLHQL  255 (256)
T ss_pred             ---CHHHHHHHHHHcccChhhCCCHHHHHHhh
Confidence               13577889999999999999999999887

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.97  E-value=2.8e-31  Score=276.92  Aligned_cols=252  Identities=21%  Similarity=0.301  Sum_probs=187.6

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCc-eeEEeeEEecCC------ee
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPN-IVRLHGVCRSEK------AA  756 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~n-iv~l~g~~~~~~------~~  756 (966)
                      +.+..+|+|.+|.||+|+...+|+.||+||+.-..  +.......+|+..+.+ ++|+| ||++++++.+++      ..
T Consensus        14 ~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~-L~~~~~iv~L~dv~~~~~~~~~~~~l   92 (323)
T KOG0594|consen   14 EKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKR-LSHANHIVRLHDVIHTSNNHRGIGKL   92 (323)
T ss_pred             HHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHH-hCCCcceEEEEeeeeecccccccceE
Confidence            34445799999999999999999999999996442  3345667899988888 69999 999999998877      88


Q ss_pred             EEEEEccCCCCHHHHHHc-------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccc
Q 002105          757 YLVYEYIEGKELSEVLRN-------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL  829 (966)
Q Consensus       757 ~lv~Ey~~~g~L~~~l~~-------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~  829 (966)
                      ++||||++ -+|.+++..       ++-.....+..|+.+||+|||   +.+|+||||||.|||+++  ...+|++|||+
T Consensus        93 ~lvfe~~d-~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H---~~~IlHRDLKPQNlLi~~--~G~lKlaDFGl  166 (323)
T KOG0594|consen   93 YLVFEFLD-RDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLH---SHGILHRDLKPQNLLISS--SGVLKLADFGL  166 (323)
T ss_pred             EEEEEeec-ccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHH---hCCeecccCCcceEEECC--CCcEeeeccch
Confidence            99999998 599999864       344567889999999999999   559999999999999997  45679999999


Q ss_pred             ceec------CCCCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccc
Q 002105          830 AYCT------DSKSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDT  902 (966)
Q Consensus       830 ~~~~------~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  902 (966)
                      ++..      -+..++|..|.|||++.+. .|+...||||+|||+.||+++++-|.++..... +....+ .........
T Consensus       167 Ara~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~q-l~~If~-~lGtP~e~~  244 (323)
T KOG0594|consen  167 ARAFSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQ-LFRIFR-LLGTPNEKD  244 (323)
T ss_pred             HHHhcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHH-HHHHHH-HcCCCCccC
Confidence            8642      2334678889999998776 799999999999999999999988877643211 111111 111111111


Q ss_pred             cc--------cccccCC--CcchHHH----HHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          903 WV--------DPFIRGH--VSSIQNE----IVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       903 ~~--------d~~~~~~--~~~~~~~----~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      |.        ++.....  .......    .....+++..|++.+|++|.|++.++..
T Consensus       245 Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h  302 (323)
T KOG0594|consen  245 WPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTH  302 (323)
T ss_pred             CCCccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcC
Confidence            11        1000000  0000111    1356778889999999999999998875

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=8.6e-32  Score=290.30  Aligned_cols=238  Identities=23%  Similarity=0.378  Sum_probs=183.7

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEec--cCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIID--VNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~--~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      ++.+..+|.||.+.|||+.. .+...+|+||+..  .+......|..|+..+.|+-.|.+||++++|-..++.+|+||||
T Consensus       363 Yeilk~iG~GGSSkV~kV~~-s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE~  441 (677)
T KOG0596|consen  363 YEILKQIGSGGSSKVFKVLN-SDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVMEC  441 (677)
T ss_pred             hhHHHhhcCCCcceeeeeec-CCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEeec
Confidence            46677889999999999997 6667889988754  34455667999999999987899999999999999999999998


Q ss_pred             cCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----
Q 002105          763 IEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----  833 (966)
Q Consensus       763 ~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----  833 (966)
                      -+ -||..+|+.     .+| .++.+..|+..|+.+.|.+   +|||.||||+|.|+=.   +.+|+.|||++...    
T Consensus       442 Gd-~DL~kiL~k~~~~~~~~-~lk~ywkqML~aV~~IH~~---gIVHSDLKPANFLlVk---G~LKLIDFGIA~aI~~DT  513 (677)
T KOG0596|consen  442 GD-IDLNKILKKKKSIDPDW-FLKFYWKQMLLAVKTIHQH---GIVHSDLKPANFLLVK---GRLKLIDFGIANAIQPDT  513 (677)
T ss_pred             cc-ccHHHHHHhccCCCchH-HHHHHHHHHHHHHHHHHHh---ceeecCCCcccEEEEe---eeEEeeeechhcccCccc
Confidence            65 699999974     346 6778999999999999955   9999999999998853   46899999998652    


Q ss_pred             ----CCCCcCCcccccccccCCC-----------CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccC
Q 002105          834 ----DSKSINSSAYVAPETKESK-----------DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDC  898 (966)
Q Consensus       834 ----~~~~~~~~~y~aPE~~~~~-----------~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  898 (966)
                          ....+||+.||+||.+...           +++.++||||+|||||+|+.|++||...      .-.|++..    
T Consensus       514 TsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~------~n~~aKl~----  583 (677)
T KOG0596|consen  514 TSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQI------INQIAKLH----  583 (677)
T ss_pred             cceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHH------HHHHHHHH----
Confidence                2345899999999976432           3567999999999999999999998521      11233321    


Q ss_pred             cccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          899 HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       899 ~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         .+.||.-.-.++.. .+-.+++++|..|++.||.+||++.|+++
T Consensus       584 ---aI~~P~~~Iefp~~-~~~~~li~~mK~CL~rdPkkR~si~eLLq  626 (677)
T KOG0596|consen  584 ---AITDPNHEIEFPDI-PENDELIDVMKCCLARDPKKRWSIPELLQ  626 (677)
T ss_pred             ---hhcCCCccccccCC-CCchHHHHHHHHHHhcCcccCCCcHHHhc
Confidence               12333111111111 11123777888999999999999999864

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.97  E-value=3.8e-31  Score=289.49  Aligned_cols=247  Identities=23%  Similarity=0.301  Sum_probs=179.8

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ...+|.|++|.||+|+...++..||+|++....  ......+..|+..+.+ ++||||+++++++..++..|+||||++ 
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~~v~e~~~-   82 (285)
T cd07861           5 IEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKE-LQHPNIVCLQDVLMQESRLYLIFEFLS-   82 (285)
T ss_pred             eeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHh-cCCCCEeeeEEEEeeCCeEEEEEecCC-
Confidence            345688999999999998889999999885432  1223456777777766 699999999999999999999999998 


Q ss_pred             CCHHHHHH------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          766 KELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       766 g~L~~~l~------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      |+|.++++      .+++.....++.|+++||+|||   ..+|+||||||+||+++.++  .++++|+|.+....     
T Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dl~p~nil~~~~~--~~~l~dfg~~~~~~~~~~~  157 (285)
T cd07861          83 MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCH---SRRVLHRDLKPQNLLIDNKG--VIKLADFGLARAFGIPVRV  157 (285)
T ss_pred             CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCCHHHEEEcCCC--cEEECcccceeecCCCccc
Confidence            68988874      3788999999999999999999   56999999999999998754  47889999875321     


Q ss_pred             -CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhh-------c--------c
Q 002105          835 -SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCY-------S--------D  897 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~-------~--------~  897 (966)
                       ....+++.|+|||+..+ ..++.++|||||||++|||+||+.||.+...... .........       +        .
T Consensus       158 ~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (285)
T cd07861         158 YTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQ-LFRIFRILGTPTEDVWPGVTSLPDYK  236 (285)
T ss_pred             ccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHH-HHHHHHHhCCCChhhhhcchhhHHHH
Confidence             22346788999998765 4578999999999999999999999975432111 111110000       0        0


Q ss_pred             CcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          898 CHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       898 ~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .....+..+........   ...++.+++.+|++.||++|||+.+|++
T Consensus       237 ~~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~dP~~Rpt~~~ll~  281 (285)
T cd07861         237 NTFPKWKKGSLRSAVKN---LDEDGLDLLEKMLIYDPAKRISAKKALN  281 (285)
T ss_pred             hhccccCcchhHHhcCC---CCHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence            00000000000000000   1134567888999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.97  E-value=4.3e-31  Score=289.56  Aligned_cols=250  Identities=22%  Similarity=0.280  Sum_probs=178.5

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhh--cCCCceeEEeeEEec-----CCeeEE
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKL--IMHPNIVRLHGVCRS-----EKAAYL  758 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~--~~H~niv~l~g~~~~-----~~~~~l  758 (966)
                      ...+|+|++|.||+|+...++..||+|.+.....  .....+.+|+..+.++  ++||||+++++++..     ....++
T Consensus         5 ~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~~~l   84 (288)
T cd07863           5 VAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETKVTL   84 (288)
T ss_pred             eeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCceEEE
Confidence            4457899999999999988999999998864322  1223455666655442  479999999999864     345899


Q ss_pred             EEEccCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec
Q 002105          759 VYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT  833 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~  833 (966)
                      ||||++ ++|.++++.     +++.....++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||++...
T Consensus        85 v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dikp~Nili~~~~--~~kl~dfg~~~~~  158 (288)
T cd07863          85 VFEHVD-QDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGG--QVKLADFGLARIY  158 (288)
T ss_pred             EEcccc-cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCC--CEEECccCccccc
Confidence            999998 589888853     789999999999999999999   55899999999999998654  4788999987543


Q ss_pred             C-----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccc-----
Q 002105          834 D-----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTW-----  903 (966)
Q Consensus       834 ~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  903 (966)
                      .     ....+++.|+|||++.+..++.++||||+||++|||++|++||...... +...+.... ........|     
T Consensus       159 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~  236 (288)
T cd07863         159 SCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEA-DQLGKIFDL-IGLPPEDDWPRDVT  236 (288)
T ss_pred             cCcccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHH-HHHHHHHHH-hCCCChhhCccccc
Confidence            2     2345788999999999889999999999999999999999998654221 111111110 000000000     


Q ss_pred             -----ccccccCCCcch-HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          904 -----VDPFIRGHVSSI-QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       904 -----~d~~~~~~~~~~-~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                           ..+......... .+...++.+++.+|++.||++|||+.|++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~  284 (288)
T cd07863         237 LPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ  284 (288)
T ss_pred             ccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence                 000000000000 011234567888999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.97  E-value=6.9e-31  Score=292.19  Aligned_cols=183  Identities=21%  Similarity=0.413  Sum_probs=147.6

Q ss_pred             cCCCCCccEEEEEEEec--CCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEec--CCeeEEEEEccCC
Q 002105          690 SRGKKGVSSSYKVRSLA--NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS--EKAAYLVYEYIEG  765 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~--~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~--~~~~~lv~Ey~~~  765 (966)
                      .+|+|++|.||+|+...  ++..||+|++....  ....+.+|+..+.+ ++|||||++++++..  +...++||||+++
T Consensus         8 ~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~~~lv~e~~~~   84 (317)
T cd07867           8 KVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG--ISMSACREIALLRE-LKHPNVIALQKVFLSHSDRKVWLLFDYAEH   84 (317)
T ss_pred             EeccCCCeeEEEEEecCCCccceEEEEEecCCC--CcHHHHHHHHHHHh-CCCCCeeeEEEEEeccCCCeEEEEEeeeCC
Confidence            47999999999999643  45789999875432  22356778877777 799999999999854  5678999999884


Q ss_pred             CCHHHHHH------------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC--CCceEEEeccccce
Q 002105          766 KELSEVLR------------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK--DEPHLRLSVPGLAY  831 (966)
Q Consensus       766 g~L~~~l~------------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~--~~~~~~~~~~~~~~  831 (966)
                       +|.+++.            .+++.....++.|++.||+|||   +.+|+||||||+||+++.+  ....++++|||++.
T Consensus        85 -~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~  160 (317)
T cd07867          85 -DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFAR  160 (317)
T ss_pred             -cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHH---hCCEEcCCCCHHHEEEccCCCCCCcEEEeecccee
Confidence             7777763            2678888999999999999999   5689999999999999532  33568899999875


Q ss_pred             ecC---------CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCC
Q 002105          832 CTD---------SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADA  879 (966)
Q Consensus       832 ~~~---------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~  879 (966)
                      ...         ....+|+.|+|||++.+ ..++.++|||||||++|||+||++||..
T Consensus       161 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~  218 (317)
T cd07867         161 LFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC  218 (317)
T ss_pred             ccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCccc
Confidence            421         12356889999999876 4579999999999999999999999864

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.97  E-value=6.1e-31  Score=287.05  Aligned_cols=239  Identities=19%  Similarity=0.307  Sum_probs=182.9

Q ss_pred             ccCCCCCccEEEEEEEec----CCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEec-CCeeEEEEEc
Q 002105          689 TSRGKKGVSSSYKVRSLA----NDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS-EKAAYLVYEY  762 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~----~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~-~~~~~lv~Ey  762 (966)
                      ..+|+|++|.||+|....    .+..||+|++..... ...+.+.+|+..+.+ ++||||+++++++.. +...++++||
T Consensus        12 ~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~-l~h~ni~~~~~~~~~~~~~~~~~~~~   90 (280)
T cd05043          12 DLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYG-LSHQNILPILHVCIEDGEPPFVLYPY   90 (280)
T ss_pred             eeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHh-CCCCCCCeEEEEEecCCCCCEEEEEc
Confidence            446899999999999854    257788887754322 223446778777777 699999999999876 5678999999


Q ss_pred             cCCCCHHHHHHc-----------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccce
Q 002105          763 IEGKELSEVLRN-----------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY  831 (966)
Q Consensus       763 ~~~g~L~~~l~~-----------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~  831 (966)
                      +++|+|.+++..           ++|..+..++.|++.||+|||   ..+++||||||+||+++++  ..++++++|++.
T Consensus        91 ~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH---~~~i~H~di~p~nil~~~~--~~~kl~d~g~~~  165 (280)
T cd05043          91 MNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLH---KRGVIHKDIAARNCVIDEE--LQVKITDNALSR  165 (280)
T ss_pred             CCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCHhhEEEcCC--CcEEECCCCCcc
Confidence            999999999852           679999999999999999999   5689999999999999865  456888999875


Q ss_pred             ecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccc
Q 002105          832 CTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDT  902 (966)
Q Consensus       832 ~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  902 (966)
                      ...        ....++..|+|||+..+..++.++|||||||++||++| |+.||....  ...+..+...   +.... 
T Consensus       166 ~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~--~~~~~~~~~~---~~~~~-  239 (280)
T cd05043         166 DLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEID--PFEMAAYLKD---GYRLA-  239 (280)
T ss_pred             cccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCC--HHHHHHHHHc---CCCCC-
Confidence            321        11234567999999988889999999999999999999 999986531  1112222221   11100 


Q ss_pred             cccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 002105          903 WVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESC  950 (966)
Q Consensus       903 ~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~  950 (966)
                           .....      ..++.+++.+||+.+|++|||+.||++.|++.
T Consensus       240 -----~~~~~------~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~  276 (280)
T cd05043         240 -----QPINC------PDELFAVMACCWALDPEERPSFSQLVQCLTDF  276 (280)
T ss_pred             -----CCCcC------CHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence                 00111      12567788999999999999999999999984

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=5.3e-31  Score=286.58  Aligned_cols=235  Identities=17%  Similarity=0.278  Sum_probs=183.5

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ..+|.||+|.||+|+...++..||+|.+.... ......+.+|+..+.+ ++||||+++++++.++...|+||||+++|+
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~   85 (274)
T cd06609           7 ECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQ-CRSPYITKYYGSFLKGSKLWIIMEYCGGGS   85 (274)
T ss_pred             hhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHH-cCCCCeeeeeEEEEECCeEEEEEEeeCCCc
Confidence            45688999999999998889999999875432 2223456777777666 699999999999999999999999999999


Q ss_pred             HHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CCCcC
Q 002105          768 LSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SKSIN  839 (966)
Q Consensus       768 L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~~~~  839 (966)
                      |.++++.  +++.....++.|++.|++|||   ..+++||||||+||+++++.  .++++|+|.+....      ....+
T Consensus        86 L~~~~~~~~~~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~ni~i~~~~--~~~l~d~g~~~~~~~~~~~~~~~~~  160 (274)
T cd06609          86 CLDLLKPGKLDETYIAFILREVLLGLEYLH---EEGKIHRDIKAANILLSEEG--DVKLADFGVSGQLTSTMSKRNTFVG  160 (274)
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCC--CEEEcccccceeecccccccccccC
Confidence            9999974  799999999999999999999   56899999999999999755  46788998875432      23457


Q ss_pred             CcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHH
Q 002105          840 SSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEI  919 (966)
Q Consensus       840 ~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  919 (966)
                      ++.|+|||+..+..++.++|||||||++|||+||+.||..... ..    .... ....     ..|.+...     ...
T Consensus       161 ~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~-~~----~~~~-~~~~-----~~~~~~~~-----~~~  224 (274)
T cd06609         161 TPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHP-MR----VLFL-IPKN-----NPPSLEGN-----KFS  224 (274)
T ss_pred             CccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCch-HH----HHHH-hhhc-----CCCCCccc-----ccC
Confidence            7889999999988899999999999999999999999864321 11    1110 0001     11111111     011


Q ss_pred             HHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          920 VEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       920 ~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .++.+++.+|++.+|++|||++++++
T Consensus       225 ~~~~~~l~~~l~~~p~~Rpt~~~il~  250 (274)
T cd06609         225 KPFKDFVSLCLNKDPKERPSAKELLK  250 (274)
T ss_pred             HHHHHHHHHHhhCChhhCcCHHHHhh
Confidence            24566788999999999999999975

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.97  E-value=1.5e-31  Score=303.23  Aligned_cols=189  Identities=20%  Similarity=0.311  Sum_probs=155.8

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecC------Cee
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE------KAA  756 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~------~~~  756 (966)
                      +.....+|+|++|.||+++....+..||||++....  ......+.+|+..+.+ ++||||+++++++...      ...
T Consensus        26 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~ii~~~~~~~~~~~~~~~~~~  104 (364)
T cd07875          26 YQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKC-VNHKNIIGLLNVFTPQKSLEEFQDV  104 (364)
T ss_pred             eeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHh-cCCCCccccceeecccccccccCeE
Confidence            344566799999999999998899999999986432  2223456677766666 7999999999988643      357


Q ss_pred             EEEEEccCCCCHHHHHH-cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-
Q 002105          757 YLVYEYIEGKELSEVLR-NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       757 ~lv~Ey~~~g~L~~~l~-~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-  834 (966)
                      |+||||+++ +|.+++. .+++.....++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||++.... 
T Consensus       105 ~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~--~~kL~DfG~a~~~~~  178 (364)
T cd07875         105 YIVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDC--TLKILDFGLARTAGT  178 (364)
T ss_pred             EEEEeCCCC-CHHHHHHhcCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEECCCC--cEEEEeCCCccccCC
Confidence            999999985 6766664 5889999999999999999999   56999999999999998654  57899999886432 


Q ss_pred             ----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                          ....+|+.|+|||++.+..++.++|||||||++|||+||+.||.+.
T Consensus       179 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  228 (364)
T cd07875         179 SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT  228 (364)
T ss_pred             CCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCC
Confidence                2346789999999999999999999999999999999999999753

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.97  E-value=6.6e-31  Score=282.73  Aligned_cols=236  Identities=20%  Similarity=0.334  Sum_probs=185.6

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ....+|+|++|.+|+++...+|..||+|++...  .....+++..|+..+.+ ++||||+++++++.+.+..++||||++
T Consensus         4 ~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~lv~e~~~   82 (256)
T cd08218           4 KVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSN-MKHPNIVQYQESFEENGNLYIVMDYCE   82 (256)
T ss_pred             EEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHh-CCCCCeeeeEeeecCCCeEEEEEecCC
Confidence            345678999999999999889999999998643  22233467888888777 799999999999999999999999999


Q ss_pred             CCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC----
Q 002105          765 GKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS----  835 (966)
Q Consensus       765 ~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~----  835 (966)
                      +++|.++++.     +++....+++.|++.|++|||   ..+++|+||||+||+++.+.  .+++.|+|.+.....    
T Consensus        83 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~~l~~~nil~~~~~--~~~l~d~~~~~~~~~~~~~  157 (256)
T cd08218          83 GGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDG--TIKLGDFGIARVLNSTVEL  157 (256)
T ss_pred             CCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCC--CEEEeeccceeecCcchhh
Confidence            9999998852     688899999999999999999   55899999999999998654  468889887754322    


Q ss_pred             --CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          836 --KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       836 --~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                        ...+++.|+|||+..+..++.++|||||||++|||+||+.|+...  ...   +.+.....+..      +....   
T Consensus       158 ~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~--~~~---~~~~~~~~~~~------~~~~~---  223 (256)
T cd08218         158 ARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAG--NMK---NLVLKIIRGSY------PPVSS---  223 (256)
T ss_pred             hhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCC--CHH---HHHHHHhcCCC------CCCcc---
Confidence              235788899999999888999999999999999999999998643  111   11111111110      00111   


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         ....++.+++.+|++.+|++||+|+||++
T Consensus       224 ---~~~~~~~~li~~~l~~~p~~Rp~~~~vl~  252 (256)
T cd08218         224 ---HYSYDLRNLVSQLFKRNPRDRPSVNSILE  252 (256)
T ss_pred             ---cCCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence               11235677888999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>PTZ00284 protein kinase; Provisional

Probab=99.97  E-value=4e-31  Score=309.26  Aligned_cols=192  Identities=16%  Similarity=0.205  Sum_probs=153.0

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhh-----cCCCceeEEeeEEecC-CeeEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL-----IMHPNIVRLHGVCRSE-KAAYL  758 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~-----~~H~niv~l~g~~~~~-~~~~l  758 (966)
                      +.....+|+|+||.||+|.....+..||||++..... ...++..|+..+.++     ..|++++++++++..+ +..++
T Consensus       131 y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~-~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~~~~i  209 (467)
T PTZ00284        131 FKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPK-YTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHMCI  209 (467)
T ss_pred             EEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchh-hHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCceEEE
Confidence            3445567999999999999988899999998854321 122344455444442     2355699999998764 57899


Q ss_pred             EEEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC--------------ce
Q 002105          759 VYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE--------------PH  821 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~--------------~~  821 (966)
                      ||||+ +++|.+++.   .+++.....|+.||+.||+|||..  .+||||||||+|||++.+..              ..
T Consensus       210 v~~~~-g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~yLH~~--~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~  286 (467)
T PTZ00284        210 VMPKY-GPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYFHTE--LHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCR  286 (467)
T ss_pred             EEecc-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhc--CCeecCCCCHHHEEEecCCcccccccccccCCCCce
Confidence            99988 678888885   389999999999999999999942  48999999999999986542              25


Q ss_pred             EEEeccccceec---CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          822 LRLSVPGLAYCT---DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       822 ~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                      ++++|||.+...   ....+||+.|||||++.+..|+.++|||||||++|||+||+.||++.
T Consensus       287 vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~  348 (467)
T PTZ00284        287 VRICDLGGCCDERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTH  348 (467)
T ss_pred             EEECCCCccccCccccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            899999976432   23457899999999999999999999999999999999999999754

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.97  E-value=7.9e-31  Score=282.23  Aligned_cols=235  Identities=21%  Similarity=0.306  Sum_probs=181.6

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEec-CCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS-EKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~-~~~~~lv~Ey~~  764 (966)
                      ...+|+|++|.||++....++..||+|++.....  ...+.+..|+..+.+ ++||||+++++.+.. ++..|+||||++
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~lv~e~~~   83 (257)
T cd08223           5 VRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQ-LKHPNIVAYRESWEGEDGLLYIVMGFCE   83 (257)
T ss_pred             EEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHh-CCCCCeeeeeeeecCCCCEEEEEecccC
Confidence            4456889999999999988889999999854322  223456677776666 699999999998864 446899999999


Q ss_pred             CCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          765 GKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       765 ~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      +++|.++++.     +++.++..++.+++.|++|||   ..+++||||||+||+++.+.  .+++.|||.+....     
T Consensus        84 ~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH---~~~i~H~di~p~nil~~~~~--~~~l~df~~~~~~~~~~~~  158 (257)
T cd08223          84 GGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLH---EKHILHRDLKTQNVFLTRTN--IIKVGDLGIARVLENQCDM  158 (257)
T ss_pred             CCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCchhEEEecCC--cEEEecccceEEecccCCc
Confidence            9999999853     789999999999999999999   56899999999999998654  57888998875422     


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                       ....+++.|+|||+..+..++.++|||||||++|||++|+.||....  ..   ++......+ ..     +....   
T Consensus       159 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~--~~---~~~~~~~~~-~~-----~~~~~---  224 (257)
T cd08223         159 ASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKD--MN---SLVYRIIEG-KL-----PPMPK---  224 (257)
T ss_pred             cccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC--HH---HHHHHHHhc-CC-----CCCcc---
Confidence             22357889999999999999999999999999999999999986431  11   111111111 11     00111   


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         ....++.+++.+|++.+|++||++.|+++
T Consensus       225 ---~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  253 (257)
T cd08223         225 ---DYSPELGELIATMLSKRPEKRPSVKSILR  253 (257)
T ss_pred             ---ccCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence               11235667889999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.97  E-value=6.8e-32  Score=305.46  Aligned_cols=188  Identities=18%  Similarity=0.314  Sum_probs=158.7

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .+..+|+|++|.||+++...++..||+|++.....   .....+..|...+.+ ++|||||++++++.+++..|+||||+
T Consensus         5 ~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~iv~~~~~~~~~~~~~lv~E~~   83 (360)
T cd05627           5 SLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVE-ADGAWVVKMFYSFQDKRNLYLIMEFL   83 (360)
T ss_pred             EEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHh-CCCCCEeeEEEEEEcCCEEEEEEeCC
Confidence            34567999999999999988999999999864321   122335566666666 79999999999999999999999999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      ++|+|.+++.   .+++.....++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||++....      
T Consensus        84 ~gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH---~~givHrDLkp~NIli~~~~--~vkL~DfG~~~~~~~~~~~~  158 (360)
T cd05627          84 PGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIH---QLGFIHRDIKPDNLLLDAKG--HVKLSDFGLCTGLKKAHRTE  158 (360)
T ss_pred             CCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEccCCCHHHEEECCCC--CEEEeeccCCcccccccccc
Confidence            9999999986   3788899999999999999999   56999999999999998654  57889999764211      


Q ss_pred             -----------------------------------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCC
Q 002105          835 -----------------------------------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADA  879 (966)
Q Consensus       835 -----------------------------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~  879 (966)
                                                         ...+||+.|||||++.+..++.++|||||||++|||+||+.||..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~  238 (360)
T cd05627         159 FYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCS  238 (360)
T ss_pred             cccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCC
Confidence                                               123689999999999999999999999999999999999999975


Q ss_pred             C
Q 002105          880 D  880 (966)
Q Consensus       880 ~  880 (966)
                      .
T Consensus       239 ~  239 (360)
T cd05627         239 E  239 (360)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.97  E-value=6e-31  Score=290.85  Aligned_cols=243  Identities=21%  Similarity=0.282  Sum_probs=185.3

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ....+|+|++|.||+++....+..||+|.+.....   .....+..|+..+.+ ++||||+++++++..++..++||||+
T Consensus         5 ~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~-~~~~~i~~~~~~~~~~~~~~lv~e~~   83 (305)
T cd05609           5 TIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTF-AENPFVVSMFCSFETKRHLCMVMEYV   83 (305)
T ss_pred             EeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHh-CCCCCeeeeEEEEecCCEEEEEEecC
Confidence            34567889999999999988899999998865422   112345666666655 79999999999999999999999999


Q ss_pred             CCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-------
Q 002105          764 EGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-------  833 (966)
Q Consensus       764 ~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-------  833 (966)
                      +||+|.++++.   +++.....++.+++.|++|||   +.+++||||||+||+++.+.  .+++.+||.+...       
T Consensus        84 ~g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~NIll~~~~--~~~l~dfg~~~~~~~~~~~~  158 (305)
T cd05609          84 EGGDCATLLKNIGALPVDMARMYFAETVLALEYLH---NYGIVHRDLKPDNLLITSMG--HIKLTDFGLSKIGLMSLTTN  158 (305)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHEEECCCC--CEEEeeCCCccccCcCcccc
Confidence            99999999963   789999999999999999999   55899999999999998654  4678888876421       


Q ss_pred             --------------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCc
Q 002105          834 --------------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCH  899 (966)
Q Consensus       834 --------------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  899 (966)
                                    .....++..|+|||++....++.++|||||||++||++||+.||.+..  ..   ++........ 
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~--~~---~~~~~~~~~~-  232 (305)
T cd05609         159 LYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDT--PE---ELFGQVISDD-  232 (305)
T ss_pred             ccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HH---HHHHHHHhcc-
Confidence                          011246778999999988889999999999999999999999986431  11   1111111100 


Q ss_pred             ccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 002105          900 LDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESC  950 (966)
Q Consensus       900 ~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~  950 (966)
                         ...|......      ..++.+++.+|++.+|++||++.++.+.|+..
T Consensus       233 ---~~~~~~~~~~------~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~~  274 (305)
T cd05609         233 ---IEWPEGDEAL------PADAQDLISRLLRQNPLERLGTGGAFEVKQHR  274 (305)
T ss_pred             ---cCCCCccccC------CHHHHHHHHHHhccChhhccCccCHHHHHhCc
Confidence               0111111111      12466788899999999999988888888764

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.97  E-value=8.9e-31  Score=286.65  Aligned_cols=251  Identities=19%  Similarity=0.294  Sum_probs=184.2

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ...+|+|++|.||+++...+|..||+|++.....  ...+.+..|+..+.+ ++||||+++++++..++..++||||+++
T Consensus         6 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~-~~h~~i~~~~~~~~~~~~~~~v~e~~~~   84 (286)
T cd07847           6 LSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQ-LKHPNLVNLIEVFRRKRKLHLVFEYCDH   84 (286)
T ss_pred             eeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHh-CCCCCEeeeeeEEeeCCEEEEEEeccCc
Confidence            4456899999999999988899999998864422  223346677777777 7999999999999999999999999999


Q ss_pred             CCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC------C
Q 002105          766 KELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS------K  836 (966)
Q Consensus       766 g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~------~  836 (966)
                      +.|..+++   .++|..+..++.|++.||+|||   ..+++||||||+||+++.+.  .++++|||.+.....      .
T Consensus        85 ~~l~~~~~~~~~~~~~~~~~~~~ql~~~l~~LH---~~~i~H~dl~p~nil~~~~~--~~~l~dfg~~~~~~~~~~~~~~  159 (286)
T cd07847          85 TVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCH---KHNCIHRDVKPENILITKQG--QIKLCDFGFARILTGPGDDYTD  159 (286)
T ss_pred             cHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCChhhEEEcCCC--cEEECccccceecCCCcccccC
Confidence            99988875   4899999999999999999999   56899999999999998654  578899998765322      2


Q ss_pred             CcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhc-----------cCcccccc
Q 002105          837 SINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYS-----------DCHLDTWV  904 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~  904 (966)
                      ..++..|+|||++.+ ..++.++|||||||++|||+||+.||.+.... +....+......           ........
T Consensus       160 ~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (286)
T cd07847         160 YVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDV-DQLYLIRKTLGDLIPRHQQIFSTNQFFKGLS  238 (286)
T ss_pred             cccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHHHhCCCChHHhhhccccccccccc
Confidence            346788999999865 55789999999999999999999999754321 111111111000           00000000


Q ss_pred             cccccCCCcc---hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          905 DPFIRGHVSS---IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       905 d~~~~~~~~~---~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .|......+.   .......+.+++.+|++.+|++||++.|++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         239 IPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             CCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence            0100000000   0011235678889999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.97  E-value=9.6e-31  Score=286.58  Aligned_cols=244  Identities=21%  Similarity=0.301  Sum_probs=184.4

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecC--CeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--KAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--~~~~lv~Ey~  763 (966)
                      ....+|.|++|.||++....++..+|+|.+..... ....++.+|++.+.+ ++|||||+++++|...  +..++||||+
T Consensus         5 ~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~~~lv~e~~   83 (287)
T cd06621           5 ELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKS-CKSPYIVKYYGAFLDESSSSIGIAMEYC   83 (287)
T ss_pred             EEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHh-CCCCCeeeeeeEEEccCCCeEEEEEEec
Confidence            34557889999999999988889999998864322 234567888887777 7999999999998653  4689999999


Q ss_pred             CCCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          764 EGKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       764 ~~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      ++|+|.+++.       .+++.....++.|++.||+|||   ..+++|+||+|+||+++.+.  .+++.|||++....  
T Consensus        84 ~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH---~~~i~H~dl~~~nil~~~~~--~~~l~dfg~~~~~~~~  158 (287)
T cd06621          84 EGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLH---SRKIIHRDIKPSNILLTRKG--QVKLCDFGVSGELVNS  158 (287)
T ss_pred             CCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEecCC--eEEEeecccccccccc
Confidence            9999998874       2678888999999999999999   56899999999999998654  47889998865322  


Q ss_pred             --CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCC---chhhHHHHHHHhhccCccccccccccc
Q 002105          835 --SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFG---VHESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       835 --~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                        ....++..|+|||...+..++.++||||+||++|||+||+.|+.....   .......+...    ...     +.+.
T Consensus       159 ~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~  229 (287)
T cd06621         159 LAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVN----MPN-----PELK  229 (287)
T ss_pred             ccccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhc----CCc-----hhhc
Confidence              223567889999999999999999999999999999999999875421   11111122211    000     1111


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ...........++.+++.+||+.+|++||||.||++
T Consensus       230 ~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~  265 (287)
T cd06621         230 DEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLE  265 (287)
T ss_pred             cCCCCCCchHHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence            110000111235678889999999999999999986

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.97  E-value=2.7e-31  Score=290.76  Aligned_cols=240  Identities=22%  Similarity=0.357  Sum_probs=183.2

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEecc-CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV-NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~-~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .+..+|.|++|.||+++...++..||+|++... .......+.+|+..+.+ ++||||+++++++..++..|+||||+++
T Consensus         5 ~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~-~~~~~i~~~~~~~~~~~~~~lv~e~~~~   83 (286)
T cd06622           5 VLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHK-AVSPYIVDFYGAFFIEGAVYMCMEYMDA   83 (286)
T ss_pred             hhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHh-cCCCcHHhhhhheecCCeEEEEEeecCC
Confidence            345678999999999999889999999988543 22223457788887777 6999999999999999999999999999


Q ss_pred             CCHHHHHH------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----CC
Q 002105          766 KELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----DS  835 (966)
Q Consensus       766 g~L~~~l~------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----~~  835 (966)
                      ++|.++++      .+++.....++.+++.||.|||+  ..+|+||||||+||+++.+  ..++++|||.+...    ..
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~~~~~~  159 (286)
T cd06622          84 GSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKE--EHNIIHRDVKPTNVLVNGN--GQVKLCDFGVSGNLVASLAK  159 (286)
T ss_pred             CCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHh--cCCEeeCCCCHHHEEECCC--CCEEEeecCCcccccCCccc
Confidence            99999885      37899999999999999999995  2489999999999999974  45788999987542    22


Q ss_pred             CCcCCcccccccccCCC------CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccccc
Q 002105          836 KSINSSAYVAPETKESK------DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~------~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                      ...+++.|+|||+..+.      .++.++|||||||++|||+||+.||.....  ........... ...     .+.+.
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~--~~~~~~~~~~~-~~~-----~~~~~  231 (286)
T cd06622         160 TNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETY--ANIFAQLSAIV-DGD-----PPTLP  231 (286)
T ss_pred             cCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcch--hhHHHHHHHHh-hcC-----CCCCC
Confidence            34577899999987544      358899999999999999999999864311  11111111100 000     11111


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .      ....++.+++.+|++.+|++||++++++.
T Consensus       232 ~------~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  261 (286)
T cd06622         232 S------GYSDDAQDFVAKCLNKIPNRRPTYAQLLE  261 (286)
T ss_pred             c------ccCHHHHHHHHHHcccCcccCCCHHHHhc
Confidence            1      11234567788999999999999999986

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=3e-31  Score=296.39  Aligned_cols=188  Identities=21%  Similarity=0.305  Sum_probs=155.6

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ....+|+|++|.||+++...++..||+|.+.....   ...+.+..|...+.+ ++||||+++++++.+++..|+||||+
T Consensus         5 ~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~-~~~~~i~~~~~~~~~~~~~~lv~e~~   83 (331)
T cd05597           5 ILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVN-GDRRWITNLHYAFQDENNLYLVMDYY   83 (331)
T ss_pred             EEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHh-CCCCCCCceEEEEecCCeEEEEEecC
Confidence            34567999999999999988899999999864221   122335556555555 79999999999999999999999999


Q ss_pred             CCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          764 EGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       764 ~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      ++|+|.+++..    +++.....++.||+.||+|||   +.+|+||||||+||+++.+.  .+++.|||++....     
T Consensus        84 ~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~--~~kl~Dfg~~~~~~~~~~~  158 (331)
T cd05597          84 VGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVH---QLGYVHRDIKPDNVLLDKNG--HIRLADFGSCLRLLADGTV  158 (331)
T ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEECCCCHHHEEECCCC--CEEEEECCceeecCCCCCc
Confidence            99999999853    788889999999999999999   56899999999999998654  57889999875421     


Q ss_pred             --CCCcCCcccccccccCC-----CCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          835 --SKSINSSAYVAPETKES-----KDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       835 --~~~~~~~~y~aPE~~~~-----~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                        ....||+.|||||++..     ..++.++|||||||++|||++|+.||...
T Consensus       159 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~  211 (331)
T cd05597         159 QSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAE  211 (331)
T ss_pred             cccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCC
Confidence              11358999999999863     45788999999999999999999998653

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.97  E-value=5.8e-31  Score=287.71  Aligned_cols=237  Identities=20%  Similarity=0.328  Sum_probs=180.3

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ...+|.|++|.||+++...+|..||+|++.... .....++..|+....+..+|||||++++++..++..|+||||++ |
T Consensus         6 ~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~   84 (283)
T cd06617           6 IEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICMEVMD-T   84 (283)
T ss_pred             EEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhhhhc-c
Confidence            345789999999999998899999999886432 22234566777776676799999999999999999999999997 7


Q ss_pred             CHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          767 ELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       767 ~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      +|.++++       .+++.....++.||+.||+|||+.  .+++||||||+||+++.+.  .+++.|+|.+....     
T Consensus        85 ~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~--~~i~h~dlkp~nil~~~~~--~~kl~dfg~~~~~~~~~~~  160 (283)
T cd06617          85 SLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSK--LSVIHRDVKPSNVLINRNG--QVKLCDFGISGYLVDSVAK  160 (283)
T ss_pred             cHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCC--CEEEeeccccccccccccc
Confidence            8887774       278999999999999999999942  3899999999999998654  47888998875321     


Q ss_pred             CCCcCCcccccccccCC----CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccccc-
Q 002105          835 SKSINSSAYVAPETKES----KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR-  909 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~----~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-  909 (966)
                      ....++..|+|||++.+    ..++.++|||||||++|||++|+.||.......+.+...    ...      ..+.+. 
T Consensus       161 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~----~~~------~~~~~~~  230 (283)
T cd06617         161 TIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQV----VEE------PSPQLPA  230 (283)
T ss_pred             ccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHHHHHHH----Hhc------CCCCCCc
Confidence            22357888999998764    456889999999999999999999986422211211111    111      111111 


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ..+      ..++.+++.+|++.+|++||++.||+.
T Consensus       231 ~~~------~~~l~~li~~~l~~~p~~Rp~~~~il~  260 (283)
T cd06617         231 EKF------SPEFQDFVNKCLKKNYKERPNYPELLQ  260 (283)
T ss_pred             ccc------CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            011      124667888999999999999999975

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.97  E-value=5.7e-31  Score=289.04  Aligned_cols=248  Identities=19%  Similarity=0.296  Sum_probs=183.6

Q ss_pred             HHHHhhcc-ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecC--
Q 002105          677 DEIISSTT-EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--  753 (966)
Q Consensus       677 ~~~~~~~~-~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--  753 (966)
                      +++..+++ ......+|+|++|.||++....++..+|+|.+.... .....+..|+..+.++.+||||+++++++...  
T Consensus        15 ~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~   93 (291)
T cd06639          15 ESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS-DVDEEIEAEYNILQSLPNHPNVVKFYGMFYKADK   93 (291)
T ss_pred             ccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc-cHHHHHHHHHHHHHHhcCCCCeEEEEEEEEeccc
Confidence            34333333 344456799999999999998889999999875432 22345667777777754899999999998753  


Q ss_pred             ---CeeEEEEEccCCCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEE
Q 002105          754 ---KAAYLVYEYIEGKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR  823 (966)
Q Consensus       754 ---~~~~lv~Ey~~~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~  823 (966)
                         +..|+||||+++|+|.++++       .++|.....++.|++.||+|||   ..+++||||||+||+++.+.  .++
T Consensus        94 ~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~nili~~~~--~~k  168 (291)
T cd06639          94 LVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLH---NNRIIHRDVKGNNILLTTEG--GVK  168 (291)
T ss_pred             cCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEEcCCC--CEE
Confidence               35899999999999999874       3789999999999999999999   55999999999999998755  468


Q ss_pred             EeccccceecC------CCCcCCcccccccccCCC-----CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHH
Q 002105          824 LSVPGLAYCTD------SKSINSSAYVAPETKESK-----DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWAR  892 (966)
Q Consensus       824 ~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~-----~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~  892 (966)
                      ++|+|.+....      ....++..|+|||++...     .++.++|||||||++|||++|+.||..... ...+.++.+
T Consensus       169 l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~-~~~~~~~~~  247 (291)
T cd06639         169 LVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHP-VKTLFKIPR  247 (291)
T ss_pred             EeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcH-HHHHHHHhc
Confidence            88998765321      223577889999987543     368899999999999999999999864321 111111111


Q ss_pred             HhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          893 YCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       893 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                          . ......++         .+...++.+++.+|++.+|++||++.|++.
T Consensus       248 ----~-~~~~~~~~---------~~~~~~l~~li~~~l~~~p~~Rps~~~il~  286 (291)
T cd06639         248 ----N-PPPTLLHP---------EKWCRSFNHFISQCLIKDFEARPSVTHLLE  286 (291)
T ss_pred             ----C-CCCCCCcc---------cccCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence                0 00010111         112235777889999999999999999875

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.97  E-value=9.7e-31  Score=285.14  Aligned_cols=236  Identities=21%  Similarity=0.258  Sum_probs=175.5

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCcc--c-ccchHHHHHH--HHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--T-TSSFWPDVSQ--FGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--~-~~~~~~e~~~--~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      +|+|++|.||+++...++..+|+|.+......  . ...+..|...  +....+||||+++++++..++..++||||+++
T Consensus         2 lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (279)
T cd05633           2 IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMNG   81 (279)
T ss_pred             cccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCCC
Confidence            58899999999999888999999988643221  1 1123333322  22224799999999999999999999999999


Q ss_pred             CCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----CCCc
Q 002105          766 KELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----SKSI  838 (966)
Q Consensus       766 g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----~~~~  838 (966)
                      |+|.+++.   .++|.....++.|++.||+|||   +.+|+||||||+||+++.+.  .+++.|||++....    ....
T Consensus        82 ~~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH---~~~ivH~dikp~Nil~~~~~--~~~l~dfg~~~~~~~~~~~~~~  156 (279)
T cd05633          82 GDLHYHLSQHGVFSEKEMRFYATEIILGLEHMH---NRFVVYRDLKPANILLDEHG--HVRISDLGLACDFSKKKPHASV  156 (279)
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcCCCCCCHHHEEECCCC--CEEEccCCcceeccccCccCcC
Confidence            99999985   3899999999999999999999   56899999999999998654  57889999875321    2346


Q ss_pred             CCcccccccccC-CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          839 NSSAYVAPETKE-SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       839 ~~~~y~aPE~~~-~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      |+..|+|||... +..++.++|||||||++|||+||+.||..........  .......       .++.+....     
T Consensus       157 ~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~--~~~~~~~-------~~~~~~~~~-----  222 (279)
T cd05633         157 GTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHE--IDRMTLT-------VNVELPDSF-----  222 (279)
T ss_pred             CCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHH--HHHHhhc-------CCcCCcccc-----
Confidence            889999999886 4568999999999999999999999997543221111  1110000       111111111     


Q ss_pred             HHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARP-----CASDVTKT  946 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RP-----t~~~v~~~  946 (966)
                       ..++.+++.+|++.||++||     +++|+++.
T Consensus       223 -~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h  255 (279)
T cd05633         223 -SPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEH  255 (279)
T ss_pred             -CHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhC
Confidence             12456677899999999999     58887653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.97  E-value=6.7e-31  Score=285.90  Aligned_cols=240  Identities=23%  Similarity=0.422  Sum_probs=181.7

Q ss_pred             ccccCCCCCccEEEEEEEec-----CCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLA-----NDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~-----~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      .+..+|.||+|.||+|+...     ....||+|.+...... ...++..|+..+.+ ++|||||++++++.+.+..++||
T Consensus         9 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~   87 (275)
T cd05046           9 EITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRK-LSHKNVVRLLGLCREAEPHYMIL   87 (275)
T ss_pred             eeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHh-cCCcceeeeEEEECCCCcceEEE
Confidence            34557999999999999643     3457888876543322 23467888888888 69999999999999999999999


Q ss_pred             EccCCCCHHHHHH------------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccc
Q 002105          761 EYIEGKELSEVLR------------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPG  828 (966)
Q Consensus       761 Ey~~~g~L~~~l~------------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~  828 (966)
                      ||+++|+|.++++            .++|..+..++.|++.||+|||   +.+|+||||||+||+++.+.  .+++++++
T Consensus        88 e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH---~~~i~H~dlkp~Nili~~~~--~~~l~~~~  162 (275)
T cd05046          88 EYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLS---NARFVHRDLAARNCLVSSQR--EVKVSLLS  162 (275)
T ss_pred             EecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhh---hcCcccCcCccceEEEeCCC--cEEEcccc
Confidence            9999999999985            3789999999999999999999   55899999999999998755  45677777


Q ss_pred             cceecC-------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcc
Q 002105          829 LAYCTD-------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHL  900 (966)
Q Consensus       829 ~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  900 (966)
                      ++....       ....++..|+|||...+..++.++|||||||++||+++ |..||....  ...+.....   . ...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~--~~~~~~~~~---~-~~~  236 (275)
T cd05046         163 LSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLS--DEEVLNRLQ---A-GKL  236 (275)
T ss_pred             cccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccc--hHHHHHHHH---c-CCc
Confidence            654211       12345667999999988888999999999999999999 788875321  111112111   0 111


Q ss_pred             cccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          901 DTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       901 ~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                      . +..+   ...      ...+.+++.+|++.+|++||++.|++++|+
T Consensus       237 ~-~~~~---~~~------~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~  274 (275)
T cd05046         237 E-LPVP---EGC------PSRLYKLMTRCWAVNPKDRPSFSELVSALG  274 (275)
T ss_pred             C-CCCC---CCC------CHHHHHHHHHHcCCCcccCCCHHHHHHHhc
Confidence            0 1111   111      135677889999999999999999999885

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.97  E-value=5.3e-31  Score=283.43  Aligned_cols=237  Identities=19%  Similarity=0.262  Sum_probs=186.2

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .+..+|.|++|.||.++...++..+|+|++....  .....++.+|+..+.+ ++||||+++++++.+++..++||||++
T Consensus         4 ~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~-~~h~~i~~~~~~~~~~~~~~~~~e~~~   82 (256)
T cd08221           4 PIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSL-LQHPNIIAYYNHFMDDNTLLIEMEYAN   82 (256)
T ss_pred             EeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHh-CCCCCeeEEEeEEecCCeEEEEEEecC
Confidence            3456788899999999998899999999875432  2334457788887777 699999999999999999999999999


Q ss_pred             CCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          765 GKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       765 ~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      +|+|.+++..     +++.++..++.|+++|++|||   +.+++||||||+||+++++.  .+++.|+|.+....     
T Consensus        83 ~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~ni~~~~~~--~~kl~d~~~~~~~~~~~~~  157 (256)
T cd08221          83 GGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIH---KAGILHRDIKTLNIFLTKAG--LIKLGDFGISKILGSEYSM  157 (256)
T ss_pred             CCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChHhEEEeCCC--CEEECcCcceEEccccccc
Confidence            9999999953     788999999999999999999   55899999999999999654  47889999875422     


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                       ....+++.|+|||+..+..++.++||||||+++|||++|+.||..... .    +........ ..    .+.. ... 
T Consensus       158 ~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~-~----~~~~~~~~~-~~----~~~~-~~~-  225 (256)
T cd08221         158 AETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNP-L----NLVVKIVQG-NY----TPVV-SVY-  225 (256)
T ss_pred             ccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCH-H----HHHHHHHcC-CC----CCCc-ccc-
Confidence             224578899999999888889999999999999999999999865321 1    111111111 11    1100 111 


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                           ..++.+++.+|++.+|++||+++|+++.
T Consensus       226 -----~~~~~~~i~~~l~~~p~~R~s~~~ll~~  253 (256)
T cd08221         226 -----SSELISLVHSLLQQDPEKRPTADEVLDQ  253 (256)
T ss_pred             -----CHHHHHHHHHHcccCcccCCCHHHHhhC
Confidence                 1346677889999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.97  E-value=4.2e-31  Score=268.98  Aligned_cols=189  Identities=21%  Similarity=0.291  Sum_probs=157.6

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEec--CCeeEEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS--EKAAYLVYE  761 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~--~~~~~lv~E  761 (966)
                      +.+..+++|.||.||+|++..++..||+||+....  ..-.-...+|+..+.+ ++|||||.+-.+...  -+.+|||||
T Consensus        79 e~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~-~~H~NIV~vkEVVvG~~~d~iy~VMe  157 (419)
T KOG0663|consen   79 EKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLK-ARHPNIVEVKEVVVGSNMDKIYIVME  157 (419)
T ss_pred             HHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHh-cCCCCeeeeEEEEeccccceeeeeHH
Confidence            45567788999999999999999999999996432  1223346899999998 799999999998764  467999999


Q ss_pred             ccCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC--
Q 002105          762 YIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--  835 (966)
Q Consensus       762 y~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~--  835 (966)
                      ||+. ||...+..    +...+..-+..|+.+|++|||   ...|+|||+||+|+|+...+  .+|++|||+|+...+  
T Consensus       158 ~~Eh-DLksl~d~m~q~F~~~evK~L~~QlL~glk~lH---~~wilHRDLK~SNLLm~~~G--~lKiaDFGLAR~ygsp~  231 (419)
T KOG0663|consen  158 YVEH-DLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLH---DNWILHRDLKTSNLLLSHKG--ILKIADFGLAREYGSPL  231 (419)
T ss_pred             HHHh-hHHHHHHhccCCCchHHHHHHHHHHHHHHHHHh---hceeEecccchhheeeccCC--cEEecccchhhhhcCCc
Confidence            9995 88888863    667788889999999999999   55899999999999998654  579999999976432  


Q ss_pred             ----CCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCC
Q 002105          836 ----KSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADF  881 (966)
Q Consensus       836 ----~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~  881 (966)
                          ..+-|..|.|||.+.+ ..|+++.|+||+|||+.|++++++-|.+..
T Consensus       232 k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~s  282 (419)
T KOG0663|consen  232 KPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKS  282 (419)
T ss_pred             ccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCc
Confidence                3355779999998765 569999999999999999999999887654

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.97  E-value=8.5e-31  Score=283.65  Aligned_cols=235  Identities=19%  Similarity=0.307  Sum_probs=176.1

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc-----cccchHHHHHHHHhhcCCCceeEEeeEEec--CCeeEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-----TTSSFWPDVSQFGKLIMHPNIVRLHGVCRS--EKAAYLVY  760 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-----~~~~~~~e~~~~~~~~~H~niv~l~g~~~~--~~~~~lv~  760 (966)
                      ...+|+|++|.||++....++..||+|++......     ....+.+|+..+.+ ++||||+++++++..  ++..+++|
T Consensus         7 ~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~~~l~~   85 (266)
T cd06651           7 GKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKN-LQHERIVQYYGCLRDRAEKTLTIFM   85 (266)
T ss_pred             cceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHH-cCCCCeeeEEEEEEcCCCCEEEEEE
Confidence            34568899999999999888999999988543211     12346677777766 699999999999875  36789999


Q ss_pred             EccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---
Q 002105          761 EYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       761 Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---  834 (966)
                      ||+++++|.+++..   +++.....++.|++.||+|||   ..+|+||||||+||+++.+.  .+++.|+|++....   
T Consensus        86 e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH---~~~i~H~~l~p~nil~~~~~--~~~l~dfg~~~~~~~~~  160 (266)
T cd06651          86 EYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLH---SNMIVHRDIKGANILRDSAG--NVKLGDFGASKRLQTIC  160 (266)
T ss_pred             eCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCC--CEEEccCCCcccccccc
Confidence            99999999999863   789999999999999999999   56899999999999998654  47889998764321   


Q ss_pred             ------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccc
Q 002105          835 ------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI  908 (966)
Q Consensus       835 ------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  908 (966)
                            ....++..|+|||++.+..++.++|||||||++|||+||+.||.... ....+    .......     ..|.+
T Consensus       161 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~-~~~~~----~~~~~~~-----~~~~~  230 (266)
T cd06651         161 MSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYE-AMAAI----FKIATQP-----TNPQL  230 (266)
T ss_pred             ccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccc-hHHHH----HHHhcCC-----CCCCC
Confidence                  12346788999999998889999999999999999999999986431 11111    1110000     11211


Q ss_pred             cCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       909 ~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ....   .+   .+.. +++||..+|++||+|+||++
T Consensus       231 ~~~~---~~---~~~~-li~~~~~~p~~Rp~~~eil~  260 (266)
T cd06651         231 PSHI---SE---HARD-FLGCIFVEARHRPSAEELLR  260 (266)
T ss_pred             chhc---CH---HHHH-HHHHhcCChhhCcCHHHHhc
Confidence            1111   12   2222 33799999999999999964

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.97  E-value=1.7e-30  Score=280.37  Aligned_cols=236  Identities=22%  Similarity=0.382  Sum_probs=184.7

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCH
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL  768 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L  768 (966)
                      ..+|+|++|.||++.. .++..||||.+... ....+++.+|+..+.+ ++||||+++++++..+...++||||+++|+|
T Consensus        12 ~~ig~g~~~~v~~~~~-~~~~~~~vK~~~~~-~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   88 (261)
T cd05034          12 RKLGAGQFGEVWMGTW-NGTTKVAVKTLKPG-TMSPEAFLQEAQIMKK-LRHDKLVQLYAVCSEEEPIYIVTEYMSKGSL   88 (261)
T ss_pred             eeeccCcceEEEEEEE-cCCceEEEEEecCC-ccCHHHHHHHHHHHhh-CCCCCEeeeeeeeecCCceEEEEeccCCCCH
Confidence            3468899999999986 56788999987643 2334568888887777 7999999999999998999999999999999


Q ss_pred             HHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-------C
Q 002105          769 SEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-------K  836 (966)
Q Consensus       769 ~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-------~  836 (966)
                      .++++     .++|..+..++.+++.|++|||   ..+++||||||+||+++++  ..+++.|+|.+.....       .
T Consensus        89 ~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh---~~~i~h~di~p~nili~~~--~~~~l~d~g~~~~~~~~~~~~~~~  163 (261)
T cd05034          89 LDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLE---SRNYIHRDLAARNILVGEN--LVCKIADFGLARLIEDDEYTAREG  163 (261)
T ss_pred             HHHHhccccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcchheEEEcCC--CCEEECccccceeccchhhhhhhc
Confidence            99995     3789999999999999999999   5589999999999999865  4578889988654321       1


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...+..|+|||...+..++.++|||||||++||++| |+.||.+..  .....+...   .....   ..|   ...   
T Consensus       164 ~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~--~~~~~~~~~---~~~~~---~~~---~~~---  229 (261)
T cd05034         164 AKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMT--NREVLEQVE---RGYRM---PRP---PNC---  229 (261)
T ss_pred             cCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHH---cCCCC---CCC---CCC---
Confidence            223567999999998889999999999999999999 999986432  111112111   11000   011   011   


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                         ..++.+++.+|++.+|++||+++++.+.|+.
T Consensus       230 ---~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         230 ---PEELYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             ---CHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence               2356778899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.97  E-value=1.4e-30  Score=281.46  Aligned_cols=239  Identities=22%  Similarity=0.316  Sum_probs=184.7

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEec--CCeeEEEEEcc
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS--EKAAYLVYEYI  763 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~--~~~~~lv~Ey~  763 (966)
                      ....|.|++|.||++....++..||+|.+....  ....+.+..|+..+.+ ++||||+++++++..  +...++||||+
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~~~~~e~~   83 (265)
T cd08217           5 LETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRE-LKHPNIVRYYDRIIDRSNQTLYIVMEYC   83 (265)
T ss_pred             eeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHh-cCCCccceeeeeeecCCCCEEEEEehhc
Confidence            345688999999999998899999999875432  2223346667777766 799999999998764  45689999999


Q ss_pred             CCCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcC--CCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          764 EGKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHC--SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       764 ~~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~--~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      ++|+|.++++       .+++.....++.+++.||+|||..+  ..+++||||||+||+++.+  ..+++.|+|.+....
T Consensus        84 ~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~--~~~kl~d~g~~~~~~  161 (265)
T cd08217          84 EGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDAN--NNVKLGDFGLAKILG  161 (265)
T ss_pred             cCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecC--CCEEEeccccccccc
Confidence            9999999985       3789999999999999999999554  6689999999999999964  457889998876432


Q ss_pred             ------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccc
Q 002105          835 ------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI  908 (966)
Q Consensus       835 ------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  908 (966)
                            ....+++.|+|||++.+..++.++||||||+++|||++|+.|+....  .....+...    ....     +.+
T Consensus       162 ~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~--~~~~~~~~~----~~~~-----~~~  230 (265)
T cd08217         162 HDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARN--QLQLASKIK----EGKF-----RRI  230 (265)
T ss_pred             CCcccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcC--HHHHHHHHh----cCCC-----CCC
Confidence                  22357889999999998889999999999999999999999987532  222212111    1111     111


Q ss_pred             cCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       909 ~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      ..      ....++.+++.+|++.+|++||++.+|++.
T Consensus       231 ~~------~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~  262 (265)
T cd08217         231 PY------RYSSELNEVIKSMLNVDPDKRPSTEELLQL  262 (265)
T ss_pred             cc------ccCHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence            11      112356778889999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.97  E-value=1.7e-30  Score=279.48  Aligned_cols=236  Identities=20%  Similarity=0.277  Sum_probs=184.1

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ...+|.|++|.||++....++..+|+|++....  ......+..|+..+.+ ++||||+++++++..++..++||||+++
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~-~~~~~i~~~~~~~~~~~~~~lv~e~~~~   83 (256)
T cd08220           5 IRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKL-LSHPNIIEYYENFLEDKALMIVMEYAPG   83 (256)
T ss_pred             EEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhh-CCCCchhheeeeEecCCEEEEEEecCCC
Confidence            445688999999999998899999999885432  2223456777777777 6999999999999999999999999999


Q ss_pred             CCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-----
Q 002105          766 KELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----  835 (966)
Q Consensus       766 g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-----  835 (966)
                      |+|.++++.     +++..+.+++.++++|++|||   ..+++||||||+||+++.+. ..++++|+|.+.....     
T Consensus        84 ~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh---~~~i~h~dl~~~nil~~~~~-~~~~l~d~~~~~~~~~~~~~~  159 (256)
T cd08220          84 GTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVH---TKLILHRDLKTQNILLDKHK-MVVKIGDFGISKILSSKSKAY  159 (256)
T ss_pred             CCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCC-CEEEEccCCCceecCCCcccc
Confidence            999999963     788999999999999999999   55999999999999998543 4578899998764321     


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...++..|+|||...+..++.++|||||||++|||++|+.||..... .... ...   .... ...     +....   
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~-~~~~-~~~---~~~~-~~~-----~~~~~---  225 (256)
T cd08220         160 TVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANL-PALV-LKI---MSGT-FAP-----ISDRY---  225 (256)
T ss_pred             ccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCch-HHHH-HHH---HhcC-CCC-----CCCCc---
Confidence            23578899999999988899999999999999999999999865321 1111 111   1110 000     11111   


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         ..++.+++.+||+.+|++|||+.|++.
T Consensus       226 ---~~~l~~li~~~l~~~p~~Rpt~~~ll~  252 (256)
T cd08220         226 ---SPDLRQLILSMLNLDPSKRPQLSQIMA  252 (256)
T ss_pred             ---CHHHHHHHHHHccCChhhCCCHHHHhh
Confidence               124667888999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=8.3e-31  Score=282.67  Aligned_cols=241  Identities=18%  Similarity=0.263  Sum_probs=182.6

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcc---cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI---TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~---~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      .+|.|++|.||+|....++..||+|.+......   ....+..|...+.+..+||||+++++++..++..|+||||+++|
T Consensus         3 ~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~   82 (260)
T cd05611           3 PISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNGG   82 (260)
T ss_pred             cCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCCC
Confidence            468899999999999888999999987543221   11234555555555468999999999999999999999999999


Q ss_pred             CHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec--CCCCcCCc
Q 002105          767 ELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT--DSKSINSS  841 (966)
Q Consensus       767 ~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~--~~~~~~~~  841 (966)
                      +|.++++   .+++....+++.|++.||.|||   +.+++||||||+||+++.+.  .+++.+||++...  .....+++
T Consensus        83 ~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~i~H~dl~p~nil~~~~~--~~~l~dfg~~~~~~~~~~~~~~~  157 (260)
T cd05611          83 DCASLIKTLGGLPEDWAKQYIAEVVLGVEDLH---QRGIIHRDIKPENLLIDQTG--HLKLTDFGLSRNGLENKKFVGTP  157 (260)
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCC--cEEEeecccceeccccccCCCCc
Confidence            9999986   3788999999999999999999   55899999999999998654  4688899877543  23346788


Q ss_pred             ccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHHH
Q 002105          842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVE  921 (966)
Q Consensus       842 ~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  921 (966)
                      .|+|||...+..++.++||||||+++|||+||+.||..... ........   .....    ..+.....      ...+
T Consensus       158 ~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-~~~~~~~~---~~~~~----~~~~~~~~------~~~~  223 (260)
T cd05611         158 DYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETP-DAVFDNIL---SRRIN----WPEEVKEF------CSPE  223 (260)
T ss_pred             CccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHH---hcccC----CCCccccc------CCHH
Confidence            99999999888899999999999999999999999865321 11111110   00000    00001111      1235


Q ss_pred             HHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          922 IMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       922 ~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      +.+++.+|++.+|++||++.++.+.|..
T Consensus       224 ~~~~i~~~l~~~p~~R~~~~~~~~~l~~  251 (260)
T cd05611         224 AVDLINRLLCMDPAKRLGANGYQEIKSH  251 (260)
T ss_pred             HHHHHHHHccCCHHHccCCCcHHHHHcC
Confidence            6778889999999999998877766654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.97  E-value=7.5e-31  Score=287.06  Aligned_cols=237  Identities=18%  Similarity=0.316  Sum_probs=184.5

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|+|++|.||++....++..+|+|++........+.+.+|+..+.+ ++||||+++++++..++..++||||+++++
T Consensus        24 ~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~-~~h~~vv~~~~~~~~~~~~~~v~e~~~~~~  102 (285)
T cd06648          24 FVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRD-YQHPNIVEMYSSYLVGDELWVVMEFLEGGA  102 (285)
T ss_pred             ceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHH-cCCCChheEEEEEEcCCeEEEEEeccCCCC
Confidence            3467888999999999878899999998864443334457777776666 799999999999999999999999999999


Q ss_pred             HHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CCCcC
Q 002105          768 LSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SKSIN  839 (966)
Q Consensus       768 L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~~~~  839 (966)
                      |.+++..  +++.+...++.|++.|++|||   +.+++||||||+||+++.+.  .++++|+|.+....      ....|
T Consensus       103 L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~~~i~H~dl~p~Nil~~~~~--~~~l~d~g~~~~~~~~~~~~~~~~~  177 (285)
T cd06648         103 LTDIVTHTRMNEEQIATVCLAVLKALSFLH---AQGVIHRDIKSDSILLTSDG--RVKLSDFGFCAQVSKEVPRRKSLVG  177 (285)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChhhEEEcCCC--cEEEcccccchhhccCCcccccccC
Confidence            9999864  788999999999999999999   55899999999999998654  57888988764321      12357


Q ss_pred             CcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHH
Q 002105          840 SSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEI  919 (966)
Q Consensus       840 ~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  919 (966)
                      ++.|+|||+..+..++.++|||||||++|||++|+.||.....  .   +........      ..+.....    ....
T Consensus       178 ~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~--~---~~~~~~~~~------~~~~~~~~----~~~~  242 (285)
T cd06648         178 TPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPP--L---QAMKRIRDN------LPPKLKNL----HKVS  242 (285)
T ss_pred             CccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCH--H---HHHHHHHhc------CCCCCccc----ccCC
Confidence            8899999999888899999999999999999999999864311  1   111111111      01111100    0111


Q ss_pred             HHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          920 VEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       920 ~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .++.+++.+|++.+|++||++.++++
T Consensus       243 ~~l~~li~~~l~~~p~~Rpt~~~il~  268 (285)
T cd06648         243 PRLRSFLDRMLVRDPAQRATAAELLN  268 (285)
T ss_pred             HHHHHHHHHHcccChhhCcCHHHHcc
Confidence            35677888999999999999999885

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.97  E-value=1.4e-30  Score=282.82  Aligned_cols=238  Identities=19%  Similarity=0.313  Sum_probs=179.1

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCccc----------ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT----------TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~----------~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      .+|.|++|.||+|....++..||+|++.......          .+.+..|+..+.+ ++||||+++++++...+..++|
T Consensus         8 ~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv   86 (272)
T cd06629           8 LIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKD-LDHLNIVQYLGFETTEEYLSIF   86 (272)
T ss_pred             eecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHh-cCCCCcceEEEEeccCCceEEE
Confidence            4688999999999988889999999875321111          1235667776666 6999999999999999999999


Q ss_pred             EEccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          760 YEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      |||+++|+|.++++.   +++..+..++.||+.||.|||   +.+++||||||+||+++.+.  .+++.|+|.+....  
T Consensus        87 ~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~~~nil~~~~~--~~~l~d~~~~~~~~~~  161 (272)
T cd06629          87 LEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLH---SKGILHRDLKADNLLVDADG--ICKISDFGISKKSDDI  161 (272)
T ss_pred             EecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh---hCCeeecCCChhhEEEcCCC--eEEEeecccccccccc
Confidence            999999999999864   889999999999999999999   55899999999999998654  57888888775321  


Q ss_pred             ------CCCcCCcccccccccCCCC--CCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccc
Q 002105          835 ------SKSINSSAYVAPETKESKD--ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDP  906 (966)
Q Consensus       835 ------~~~~~~~~y~aPE~~~~~~--~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  906 (966)
                            ....++..|+|||+.....  ++.++||||||+++||+++|+.|+..... .+...+.    ........ +++
T Consensus       162 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~-~~~~~~~----~~~~~~~~-~~~  235 (272)
T cd06629         162 YDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEA-IAAMFKL----GNKRSAPP-IPP  235 (272)
T ss_pred             ccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcch-HHHHHHh----hccccCCc-CCc
Confidence                  1234678899999887654  78999999999999999999999853211 1111111    11110001 111


Q ss_pred             cccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          907 FIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       907 ~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .....      ...++.+++..|++.+|++||+|+||++
T Consensus       236 ~~~~~------~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (272)
T cd06629         236 DVSMN------LSPVALDFLNACFTINPDNRPTARELLQ  268 (272)
T ss_pred             ccccc------CCHHHHHHHHHHhcCChhhCCCHHHHhh
Confidence            11111      1235667788999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.97  E-value=1.1e-30  Score=288.29  Aligned_cols=251  Identities=21%  Similarity=0.291  Sum_probs=181.9

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .....+|.|++|.||+++...++..||+|.+.... ......+..|+..+.+ ++||||+++++++..++..++||||++
T Consensus         9 ~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~nI~~~~~~~~~~~~~~lv~e~~~   87 (301)
T cd07873           9 IKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKD-LKHANIVTLHDIIHTEKSLTLVFEYLD   87 (301)
T ss_pred             EEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHh-cCCCCcceEEEEEecCCeEEEEEeccc
Confidence            34456799999999999998889999999885432 2223356678777777 699999999999999999999999998


Q ss_pred             CCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          765 GKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       765 ~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                       ++|.+++..    +++.....++.|+++||+|||   +.+|+||||||+||+++.+.  .++++|||.+....      
T Consensus        88 -~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~i~H~dlkp~Nil~~~~~--~~kl~dfg~~~~~~~~~~~~  161 (301)
T cd07873          88 -KDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCH---RRKVLHRDLKPQNLLINERG--ELKLADFGLARAKSIPTKTY  161 (301)
T ss_pred             -cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHHHEEECCCC--cEEECcCcchhccCCCCCcc
Confidence             689888853    788899999999999999999   56999999999999999654  47889999875421      


Q ss_pred             CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccC---cccc------c-
Q 002105          835 SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDC---HLDT------W-  903 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~------~-  903 (966)
                      ....+++.|+|||+..+ ..++.++|||||||++|||+||+.||..... .+.. ..........   ....      + 
T Consensus       162 ~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  239 (301)
T cd07873         162 SNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTV-EEQL-HFIFRILGTPTEETWPGILSNEEFK  239 (301)
T ss_pred             cccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHH-HHHHHHcCCCChhhchhhhcccccc
Confidence            12346788999998765 4578899999999999999999999875421 1111 1111111000   0000      0 


Q ss_pred             --ccccccCCCcc--hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          904 --VDPFIRGHVSS--IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       904 --~d~~~~~~~~~--~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                        -.|........  ......++.+++.+|++.||.+|||++||+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~  285 (301)
T cd07873         240 SYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMK  285 (301)
T ss_pred             ccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence              00100000000  0001124567889999999999999999985

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.97  E-value=1.3e-30  Score=282.05  Aligned_cols=234  Identities=20%  Similarity=0.288  Sum_probs=179.2

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcc------cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI------TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~------~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .+|.|++|.||+|.. .++..+|+|++......      ....+.+|+..+.+ ++||||++++++|.+++..++||||+
T Consensus         7 ~ig~g~~~~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~lv~e~~   84 (265)
T cd06631           7 VLGKGAYGTVYCGLT-NQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKS-LKHVNIVQYLGTCLDDNTISIFMEFV   84 (265)
T ss_pred             eEeccCCeEEEEEEE-cCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHh-cCCCCEeeEeeEeecCCeEEEEEecC
Confidence            468899999999986 68889999987543211      11336667777766 69999999999999999999999999


Q ss_pred             CCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          764 EGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       764 ~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      ++|+|.+++..   +++.....++.|++.||+|||   ..+|+|+||||+||+++++.  .+++.|||.+....      
T Consensus        85 ~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~--~~~l~dfg~~~~~~~~~~~~  159 (265)
T cd06631          85 PGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLH---NNCVVHRDIKGNNVMLMPNG--IIKLIDFGCARRLAWVGLHG  159 (265)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcCHHhEEECCCC--eEEeccchhhHhhhhccccc
Confidence            99999999864   789999999999999999999   55899999999999998654  57888988764311      


Q ss_pred             ------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccc
Q 002105          835 ------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI  908 (966)
Q Consensus       835 ------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  908 (966)
                            ....++..|+|||+..+..++.++|||||||++|||+||+.||..... ........    ..   .. ..|.+
T Consensus       160 ~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~-~~~~~~~~----~~---~~-~~~~~  230 (265)
T cd06631         160 THSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDR-LAAMFYIG----AH---RG-LMPRL  230 (265)
T ss_pred             cccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCCh-HHHHHHhh----hc---cC-CCCCC
Confidence                  123578889999999998999999999999999999999999864311 11110100    00   00 11112


Q ss_pred             cCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       909 ~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ...++      .++.+++.+|++.+|++||++.||+.
T Consensus       231 ~~~~~------~~~~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         231 PDSFS------AAAIDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             CCCCC------HHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            21221      24567788999999999999999874

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.97  E-value=9.9e-31  Score=282.09  Aligned_cols=236  Identities=18%  Similarity=0.348  Sum_probs=181.8

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|+|++|.||++.. ..+..+|+|++... ....+.|.+|+..+.+ ++|+||+++++++.+ ...++||||+++|+
T Consensus        11 ~~~lg~g~~~~vy~~~~-~~~~~~~iK~~~~~-~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~-~~~~~v~e~~~~~~   86 (260)
T cd05073          11 EKKLGAGQFGEVWMATY-NKHTKVAVKTMKPG-SMSVEAFLAEANVMKT-LQHDKLVKLHAVVTK-EPIYIITEFMAKGS   86 (260)
T ss_pred             EeEecCccceEEEEEEe-cCCccEEEEecCCC-hhHHHHHHHHHHHHHh-cCCCCcceEEEEEcC-CCeEEEEEeCCCCc
Confidence            44578999999999986 56677899877543 2234567788777766 799999999999887 77899999999999


Q ss_pred             HHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-------
Q 002105          768 LSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-------  835 (966)
Q Consensus       768 L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-------  835 (966)
                      |.++++.     ++|..+..++.+++.||+|||   ..+++||||||+||+++.+  ..++++|+|.+.....       
T Consensus        87 L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~ni~i~~~--~~~~l~d~~~~~~~~~~~~~~~~  161 (260)
T cd05073          87 LLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSAS--LVCKIADFGLARVIEDNEYTARE  161 (260)
T ss_pred             HHHHHHhCCccccCHHHHHHHHHHHHHHHHHHH---hCCccccccCcceEEEcCC--CcEEECCCcceeeccCCCccccc
Confidence            9999963     688999999999999999999   4589999999999999864  4578899987754211       


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ...++..|+|||++....++.++|||||||++||++| |+.||....  .....++...   +...     +. ..    
T Consensus       162 ~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~--~~~~~~~~~~---~~~~-----~~-~~----  226 (260)
T cd05073         162 GAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMS--NPEVIRALER---GYRM-----PR-PE----  226 (260)
T ss_pred             CCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCC--HHHHHHHHhC---CCCC-----CC-cc----
Confidence            1233467999999998889999999999999999999 899986532  1111122211   1000     10 01    


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                        ....++.+++.+|++.+|++||++.++.+.|+.
T Consensus       227 --~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         227 --NCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             --cCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence              112356678889999999999999999999975

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.97  E-value=2.1e-31  Score=291.66  Aligned_cols=252  Identities=21%  Similarity=0.325  Sum_probs=182.7

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc--cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ....+|+|++|.||++....++..||+|++......  ..+.+.+|++.+.+ ++||||+++++++..++..|+||||++
T Consensus         5 ~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~   83 (286)
T cd07846           5 NLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQ-LRHENLVNLIEVFRRKKRLYLVFEFVD   83 (286)
T ss_pred             EeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHh-cCCcchhhHHHhcccCCeEEEEEecCC
Confidence            345679999999999999778999999987543222  23456778877777 699999999999999999999999999


Q ss_pred             CCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------C
Q 002105          765 GKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------S  835 (966)
Q Consensus       765 ~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~  835 (966)
                      +++|.++.+   .++|.+...++.||++||+|||   +.+++||||||+||+++++.  .+++.|||++....      .
T Consensus        84 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~h~~l~p~ni~~~~~~--~~~l~dfg~~~~~~~~~~~~~  158 (286)
T cd07846          84 HTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCH---SHNIIHRDIKPENILVSQSG--VVKLCDFGFARTLAAPGEVYT  158 (286)
T ss_pred             ccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCC--cEEEEeeeeeeeccCCccccC
Confidence            999998875   4899999999999999999999   55899999999999998754  46888988765421      1


Q ss_pred             CCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHH---Hhhcc--------Cccccc
Q 002105          836 KSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWAR---YCYSD--------CHLDTW  903 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~---~~~~~--------~~~~~~  903 (966)
                      ...++..|+|||+..+ ..++.++|||||||++|||+||++||..+... +.......   .....        ......
T Consensus       159 ~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (286)
T cd07846         159 DYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDI-DQLYHIIKCLGNLIPRHQEIFQKNPLFAGM  237 (286)
T ss_pred             cccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchH-HHHHHHHHHhCCCchhhHHHhccchHhhcc
Confidence            2346788999998865 45788999999999999999999998654221 11101000   00000        000000


Q ss_pred             ccccccCCCc---chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          904 VDPFIRGHVS---SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       904 ~d~~~~~~~~---~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ..|.......   ........+.+++.+||+.+|++||+|+++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  282 (286)
T cd07846         238 RLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLH  282 (286)
T ss_pred             ccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence            0000000000   00011235778889999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.97  E-value=3e-30  Score=279.38  Aligned_cols=233  Identities=20%  Similarity=0.231  Sum_probs=175.9

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCHH
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS  769 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L~  769 (966)
                      .+|.|++|.||+++...++..+|+|........   ....++..+.  .+||||+++++++..++..++||||+++|+|.
T Consensus        23 ~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~---~~e~~~~~~~--~~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~   97 (267)
T PHA03390         23 KLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFN---AIEPMVHQLM--KDNPNFIKLYYSVTTLKGHVLIMDYIKDGDLF   97 (267)
T ss_pred             eecCCCceEEEEEEEcCCCcEEEEEEEehhhcc---hhhHHHHHHh--hcCCCEEEEEEEEecCCeeEEEEEcCCCCcHH
Confidence            359999999999999889999999887543211   1112222222  27999999999999999999999999999999


Q ss_pred             HHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC--CCcCCcccc
Q 002105          770 EVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--KSINSSAYV  844 (966)
Q Consensus       770 ~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~--~~~~~~~y~  844 (966)
                      ++++.   ++|.+...++.|+++|++|||   +.+++||||||+||+++.+. ..++++|||.+.....  ...++..|+
T Consensus        98 ~~l~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~-~~~~l~dfg~~~~~~~~~~~~~~~~y~  173 (267)
T PHA03390         98 DLLKKEGKLSEAEVKKIIRQLVEALNDLH---KHNIIHNDIKLENVLYDRAK-DRIYLCDYGLCKIIGTPSCYDGTLDYF  173 (267)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEeCCC-CeEEEecCccceecCCCccCCCCCccc
Confidence            99863   799999999999999999999   55899999999999998654 2578999998765332  345788999


Q ss_pred             cccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHH
Q 002105          845 APETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMN  924 (966)
Q Consensus       845 aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  924 (966)
                      |||++.+..++.++|||||||++|||+||+.||............+.... . ..     .+... .      .-..+.+
T Consensus       174 aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-~-~~-----~~~~~-~------~~~~~~~  239 (267)
T PHA03390        174 SPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQ-Q-KK-----LPFIK-N------VSKNAND  239 (267)
T ss_pred             ChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhh-c-cc-----CCccc-c------cCHHHHH
Confidence            99999998999999999999999999999999974432211111222111 1 00     01010 1      1124566


Q ss_pred             HHHHccCCCCCCCCC-HHHHHH
Q 002105          925 LALHCTAGDPTARPC-ASDVTK  945 (966)
Q Consensus       925 l~~~C~~~~P~~RPt-~~~v~~  945 (966)
                      ++.+|++.+|.+||+ ++|+++
T Consensus       240 li~~~l~~~p~~R~~~~~~~l~  261 (267)
T PHA03390        240 FVQSMLKYNINYRLTNYNEIIK  261 (267)
T ss_pred             HHHHHhccChhhCCchHHHHhc
Confidence            778999999999996 587763

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=4.2e-34  Score=309.56  Aligned_cols=362  Identities=27%  Similarity=0.416  Sum_probs=206.1

Q ss_pred             CEEEEEcCCCCccc-cccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCC
Q 002105           62 HVNAIELSAKNISG-KISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLS  140 (966)
Q Consensus        62 ~v~~L~L~~~~l~~-~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls  140 (966)
                      .|..+|+++|.++| ..|.+...+++++.|.|...++. .+|.++                       +.|.+|++|.++
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-----------------------~~lqkLEHLs~~   63 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-----------------------SRLQKLEHLSMA   63 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-----------------------HHHhhhhhhhhh
Confidence            35555555555552 44555555555555555555554 455554                       344444444444


Q ss_pred             CCCCCCcCCCCcCCCCCcCEEEccCCCCc-ccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCC
Q 002105          141 NNMLSGKIPEEIGSFSGLKVLDLGGNVLV-GEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGE  219 (966)
Q Consensus       141 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  219 (966)
                      +|++. .+-.+++.|+.|+.+++..|++. .-+|..+..+..|++|||++|++. ..|..+..-+++-.|+|++|+|. .
T Consensus        64 HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-t  140 (1255)
T KOG0444|consen   64 HNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-T  140 (1255)
T ss_pred             hhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-c
Confidence            44443 23344455555555555555553 234555555566666666666554 35555555556666666666665 3


Q ss_pred             CCc-CccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCc-ccCchhhc
Q 002105          220 IPK-EIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLS-GEIPEEVI  297 (966)
Q Consensus       220 ~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~  297 (966)
                      +|. -|-+|+.|-.||||+|++. .+|+.+..|.+|++|.|++|.+.-..-..+..+++|++|.+++.+-+ ..+|.++.
T Consensus       141 IPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld  219 (1255)
T KOG0444|consen  141 IPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD  219 (1255)
T ss_pred             CCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh
Confidence            333 3455666666666666665 45555666666666666666554322233334555556666554322 23555666


Q ss_pred             CCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEE
Q 002105          298 QLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKL  377 (966)
Q Consensus       298 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L  377 (966)
                      .+.+|..+|+|.|++. .+|..+.++++|+.|+|++|+++ .+....+.+.+|+.|+||.|+++ .+|..+|.++.|+.|
T Consensus       220 ~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kL  296 (1255)
T KOG0444|consen  220 DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKL  296 (1255)
T ss_pred             hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHH
Confidence            6666666666666665 45666666666666666666665 23334445556666666666666 466666666666666


Q ss_pred             EccCCCCCC-CCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcC
Q 002105          378 ILFSNSLEG-KIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNF  456 (966)
Q Consensus       378 ~l~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  456 (966)
                      ...+|+++- -+|+.++.+.+|+.+..++|.+. .+|..++++..|+.|.|+.|++. ..|+.+.-++.|+.|||.+|.-
T Consensus       297 y~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  297 YANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             HhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence            666666542 35666666666666666666654 55666666666666666666665 3555666666666666666643

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.97  E-value=2.8e-31  Score=288.28  Aligned_cols=238  Identities=22%  Similarity=0.327  Sum_probs=182.9

Q ss_pred             cCCCCCccEEEEEEEecC--C--cEEEEEEEec-cCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          690 SRGKKGVSSSYKVRSLAN--D--MQFVVKKIID-VNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~--~--~~vavk~~~~-~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .+|.|.||.||+|.....  |  ..||||.-+. ......+.|..|...+.+ ++|||||+++|+|.+ ...|||||.++
T Consensus       396 ~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrn-fdHphIikLIGv~~e-~P~WivmEL~~  473 (974)
T KOG4257|consen  396 LIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRN-FDHPHIIKLIGVCVE-QPMWIVMELAP  473 (974)
T ss_pred             hhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHh-CCCcchhheeeeeec-cceeEEEeccc
Confidence            358889999999987433  2  4678887765 344456678888766666 799999999999986 57899999999


Q ss_pred             CCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCC----
Q 002105          765 GKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK----  836 (966)
Q Consensus       765 ~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~----  836 (966)
                      -|.|..||+.    ++......++.||+.||+|||   +...|||||...|||+.+.  ..+|++|||+++..+..    
T Consensus       474 ~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLe---SkrfVHRDIAaRNiLVsSp--~CVKLaDFGLSR~~ed~~yYk  548 (974)
T KOG4257|consen  474 LGELREYLQQNKDSLPLRTLTLYCYQICTALAYLE---SKRFVHRDIAARNILVSSP--QCVKLADFGLSRYLEDDAYYK  548 (974)
T ss_pred             chhHHHHHHhccccchHHHHHHHHHHHHHHHHHHH---hhchhhhhhhhhheeecCc--ceeeecccchhhhccccchhh
Confidence            9999999973    677778889999999999999   6689999999999999865  35799999998653322    


Q ss_pred             ---CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          837 ---SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       837 ---~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                         ..-...|||||.+.-+++|.+||||=|||.+||++. |..||.+-... +.+     ...+.+..           .
T Consensus       549 aS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNs-DVI-----~~iEnGeR-----------l  611 (974)
T KOG4257|consen  549 ASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNS-DVI-----GHIENGER-----------L  611 (974)
T ss_pred             ccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCcccccccc-ceE-----EEecCCCC-----------C
Confidence               122457999999999999999999999999999976 99999753111 000     00111100           1


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCF  951 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~  951 (966)
                      +....+...+..++.+||+.||.+||.+.|+...|+++.
T Consensus       612 P~P~nCPp~LYslmskcWayeP~kRPrftei~~~lsdv~  650 (974)
T KOG4257|consen  612 PCPPNCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDVL  650 (974)
T ss_pred             CCCCCCChHHHHHHHHHhccCcccCCcHHHHHHHHHHHH
Confidence            111233446778899999999999999999998888743

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.97  E-value=6e-31  Score=294.04  Aligned_cols=187  Identities=21%  Similarity=0.319  Sum_probs=154.9

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ...+|+|++|.||+++...+++.||+|.+.....   .....+..|...+.+ .+||||+++++++.+++..|+||||++
T Consensus         6 ~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~-~~~~~i~~l~~~~~~~~~~~lv~Ey~~   84 (331)
T cd05624           6 IKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVN-GDCQWITTLHYAFQDENYLYLVMDYYV   84 (331)
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHh-CCCCCEeeEEEEEEcCCEEEEEEeCCC
Confidence            4467999999999999988999999998864221   112234445544444 799999999999999999999999999


Q ss_pred             CCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          765 GKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       765 ~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      ||+|.++++.    +++.....++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||++....      
T Consensus        85 gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH---~~~iiHrDlkp~Nill~~~~--~~kl~DfG~a~~~~~~~~~~  159 (331)
T cd05624          85 GGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIH---QLHYVHRDIKPDNVLLDMNG--HIRLADFGSCLKMNQDGTVQ  159 (331)
T ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCchHHEEEcCCC--CEEEEeccceeeccCCCcee
Confidence            9999999953    688889999999999999999   56999999999999998654  47889999875422      


Q ss_pred             -CCCcCCcccccccccCC-----CCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          835 -SKSINSSAYVAPETKES-----KDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~-----~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                       ....||+.|||||++.+     +.++.++|||||||++|||+||+.||...
T Consensus       160 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~  211 (331)
T cd05624         160 SSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAE  211 (331)
T ss_pred             eccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCC
Confidence             12468999999998865     56789999999999999999999999753

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.97  E-value=2.2e-30  Score=278.78  Aligned_cols=236  Identities=28%  Similarity=0.442  Sum_probs=184.0

Q ss_pred             ccCCCCCccEEEEEEEecCC----cEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          689 TSRGKKGVSSSYKVRSLAND----MQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~----~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ..+|.|++|.||+++....+    ..||+|++...... ..+.+..|+..+.+ ++||||+++++++.+.+..++||||+
T Consensus         5 ~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~i~e~~   83 (258)
T smart00219        5 KKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRK-LDHPNIVKLLGVCTEEEPLMIVMEYM   83 (258)
T ss_pred             ceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHh-cCCCchheEEEEEcCCCeeEEEEecc
Confidence            34688999999999987655    88999988544322 34567788888777 59999999999999999999999999


Q ss_pred             CCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC---
Q 002105          764 EGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS---  835 (966)
Q Consensus       764 ~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~---  835 (966)
                      ++++|.++++.     ++|..+..++.|++.|++|||   ..+++||||||+||+++++.  .++++|+|.+.....   
T Consensus        84 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh---~~~~~h~dl~~~nil~~~~~--~~~l~dfg~~~~~~~~~~  158 (258)
T smart00219       84 EGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLE---SKNFIHRDLAARNCLVGENL--VVKISDFGLSRDLYDDDY  158 (258)
T ss_pred             CCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHh---cCCeeecccccceEEEccCC--eEEEcccCCceecccccc
Confidence            99999999852     899999999999999999999   55999999999999999654  678899998754321   


Q ss_pred             ----CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          836 ----KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       836 ----~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                          ...+++.|+|||...+..++.++||||+|+++|||++ |+.|+...  ....+.+...   .....   .   ...
T Consensus       159 ~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~--~~~~~~~~~~---~~~~~---~---~~~  227 (258)
T smart00219      159 YKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGM--SNEEVLEYLK---KGYRL---P---KPE  227 (258)
T ss_pred             cccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHh---cCCCC---C---CCC
Confidence                1235678999999988889999999999999999999 78887642  1111112211   11110   0   011


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL  947 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L  947 (966)
                      .      ...++.+++.+|++.+|++|||+.|+++.|
T Consensus       228 ~------~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      228 N------CPPEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             c------CCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence            1      123566788899999999999999998764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.97  E-value=8.7e-31  Score=283.27  Aligned_cols=242  Identities=23%  Similarity=0.364  Sum_probs=186.6

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ...+|.|++|.||++....++..+|+|++.... ....+++.+|+..+.+ ++||||+++++++..++..++||||++++
T Consensus         6 ~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~-~~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (265)
T cd06605           6 LGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHK-CNSPYIVGFYGAFYNNGDISICMEYMDGG   84 (265)
T ss_pred             HHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHH-CCCCchhhhheeeecCCEEEEEEEecCCC
Confidence            345688999999999998889999999886542 2334557788877777 68999999999999999999999999999


Q ss_pred             CHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----CCCCc
Q 002105          767 ELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----DSKSI  838 (966)
Q Consensus       767 ~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----~~~~~  838 (966)
                      +|.++++    .+++....+++.|++.|++|||.  ..+++||||||+||+++.+.  .+++.|+|.+...    .....
T Consensus        85 ~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~--~~~i~H~dl~~~ni~~~~~~--~~~l~d~g~~~~~~~~~~~~~~  160 (265)
T cd06605          85 SLDKILKEVQGRIPERILGKIAVAVLKGLTYLHE--KHKIIHRDVKPSNILVNSRG--QIKLCDFGVSGQLVNSLAKTFV  160 (265)
T ss_pred             cHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcC--CCCeecCCCCHHHEEECCCC--CEEEeecccchhhHHHHhhccc
Confidence            9999996    36788889999999999999993  16999999999999999754  4788899876432    11246


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      ++..|+|||+..+..++.++||||||+++|||++|+.|+.......+...+.........      .|.+...     ..
T Consensus       161 ~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-----~~  229 (265)
T cd06605         161 GTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEP------PPRLPSG-----KF  229 (265)
T ss_pred             CChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcCC------CCCCChh-----hc
Confidence            788999999999999999999999999999999999998654221122222222211111      0111111     01


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ..++.+++..||..+|++|||+.|++.
T Consensus       230 ~~~~~~li~~~l~~~p~~Rpt~~~ll~  256 (265)
T cd06605         230 SPDFQDFVNLCLIKDPRERPSYKELLE  256 (265)
T ss_pred             CHHHHHHHHHHcCCCchhCcCHHHHhh
Confidence            234667788999999999999999875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.97  E-value=7.4e-31  Score=293.51  Aligned_cols=188  Identities=22%  Similarity=0.311  Sum_probs=155.3

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ....+|+|++|.||+++...++..+|+|.+.....   .....+..|...+.+ .+||||+++++++.+++..|+||||+
T Consensus         5 ~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~-~~~~~i~~~~~~~~~~~~~~lv~ey~   83 (332)
T cd05623           5 ILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVN-GDNQWITTLHYAFQDENNLYLVMDYY   83 (332)
T ss_pred             EEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhh-CCCCCEeeEEEEEecCCEEEEEEecc
Confidence            34567999999999999988889999998854221   112234555555555 79999999999999999999999999


Q ss_pred             CCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          764 EGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       764 ~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      ++|+|.++++.    +++.....++.|++.||+|||   +.+|+||||||+||+++.+.  .+++.|||++....     
T Consensus        84 ~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH---~~~iiHrDlkp~Nili~~~~--~~kL~DfG~a~~~~~~~~~  158 (332)
T cd05623          84 VGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNG--HIRLADFGSCLKLMEDGTV  158 (332)
T ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEECCCC--CEEEeecchheecccCCcc
Confidence            99999999963    788899999999999999999   56899999999999998654  57899999875421     


Q ss_pred             --CCCcCCcccccccccC-----CCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          835 --SKSINSSAYVAPETKE-----SKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       835 --~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                        ....||+.|||||++.     ...++.++|||||||++|||++|+.||...
T Consensus       159 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~  211 (332)
T cd05623         159 QSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAE  211 (332)
T ss_pred             eecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCC
Confidence              1246899999999875     346889999999999999999999999754

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.1e-30  Score=273.57  Aligned_cols=253  Identities=23%  Similarity=0.311  Sum_probs=184.4

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHH-hhcCCCceeEEeeEEecCC----eeEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFG-KLIMHPNIVRLHGVCRSEK----AAYLVY  760 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~-~~~~H~niv~l~g~~~~~~----~~~lv~  760 (966)
                      .-...+|+|-||+|++|++  .|..||||.+...+   ++.+++|.+... .++||+||..+++.-..++    ++|||.
T Consensus       214 ~L~e~IGkGRyGEVwrG~w--rGe~VAVKiF~srd---E~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvT  288 (513)
T KOG2052|consen  214 VLQEIIGKGRFGEVWRGRW--RGEDVAVKIFSSRD---ERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVT  288 (513)
T ss_pred             EEEEEecCccccceeeccc--cCCceEEEEecccc---hhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEee
Confidence            3445568999999999984  78899999986543   345666665543 2479999999998765432    689999


Q ss_pred             EccCCCCHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhc-----CCCCeEeecCCCCcEEEcCCCCceEEEeccccceec
Q 002105          761 EYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFH-----CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT  833 (966)
Q Consensus       761 Ey~~~g~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~-----~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~  833 (966)
                      ||-|+|||.+||..  ++-..-++++..+|.||+|||.+     ..|.|.|||||+.|||+..+...  .++|.|++...
T Consensus       289 dYHe~GSL~DyL~r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C--~IADLGLAv~h  366 (513)
T KOG2052|consen  289 DYHEHGSLYDYLNRNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTC--CIADLGLAVRH  366 (513)
T ss_pred             ecccCCcHHHHHhhccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcE--EEeeceeeEEe
Confidence            99999999999974  78888999999999999999953     47899999999999999977654  57888887542


Q ss_pred             C----------CCCcCCcccccccccCCCC----CC--CcchHHHHHHHHHHHHcC----------CCCCCCCCCchhhH
Q 002105          834 D----------SKSINSSAYVAPETKESKD----IT--EKGDIYGFGLILIDLLTG----------KSPADADFGVHESI  887 (966)
Q Consensus       834 ~----------~~~~~~~~y~aPE~~~~~~----~~--~~~Dv~S~Gv~l~el~tg----------~~p~~~~~~~~~~~  887 (966)
                      +          ...+||-.|||||++....    +.  ..+||||||.|+||++.+          +.||..-.......
T Consensus       367 ~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~  446 (513)
T KOG2052|consen  367 DSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSF  446 (513)
T ss_pred             cccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCH
Confidence            2          2347999999999875432    21  368999999999999863          34554322111111


Q ss_pred             HHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 002105          888 VEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCF  951 (966)
Q Consensus       888 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~  951 (966)
                      .+ .+..+    -..-+.|.++..... .+.+..+.++|..||..+|+.|-|+--+-+.|.+..
T Consensus       447 ee-MrkVV----Cv~~~RP~ipnrW~s-~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~  504 (513)
T KOG2052|consen  447 EE-MRKVV----CVQKLRPNIPNRWKS-DPALRVMAKLMKECWYANPAARLTALRIKKTLAKLS  504 (513)
T ss_pred             HH-Hhcce----eecccCCCCCccccc-CHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHh
Confidence            11 11100    000123333332222 467888999999999999999999999999988844

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=1.3e-30  Score=297.92  Aligned_cols=184  Identities=17%  Similarity=0.195  Sum_probs=154.4

Q ss_pred             ccccccCCCCCccEEEEEEEe--cCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          685 EENLTSRGKKGVSSSYKVRSL--ANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~--~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      +.....+|.|++|.||++...  ..+..||+|.+...     ..+.+|+..+.+ ++|||||++++++..++..++||||
T Consensus        94 y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~-l~h~~iv~~~~~~~~~~~~~lv~e~  167 (392)
T PHA03207         94 YNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKT-ISHRAIINLIHAYRWKSTVCMVMPK  167 (392)
T ss_pred             eEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHh-cCCCCccceeeeEeeCCEEEEEehh
Confidence            455667899999999998753  34567888876432     335678877777 7999999999999999999999999


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      +. ++|.+++.   .++|..+..++.|++.||+|||   ..+||||||||+|||++.+.  .+++.|||++....     
T Consensus       168 ~~-~~l~~~l~~~~~l~~~~~~~i~~ql~~aL~~LH---~~givHrDlkp~Nill~~~~--~~~l~DfG~a~~~~~~~~~  241 (392)
T PHA03207        168 YK-CDLFTYVDRSGPLPLEQAITIQRRLLEALAYLH---GRGIIHRDVKTENIFLDEPE--NAVLGDFGAACKLDAHPDT  241 (392)
T ss_pred             cC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEcCCC--CEEEccCccccccCccccc
Confidence            97 68888885   3899999999999999999999   55899999999999998654  46889999875321     


Q ss_pred             ---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          835 ---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                         ....||+.|+|||++.+..++.++|||||||++|||++|+.||.+.
T Consensus       242 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~  290 (392)
T PHA03207        242 PQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGK  290 (392)
T ss_pred             ccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence               1246899999999999999999999999999999999999998654

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.97  E-value=5.5e-33  Score=273.95  Aligned_cols=244  Identities=20%  Similarity=0.294  Sum_probs=184.5

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ..+..+|.|.||.|+|-.+.+.|+.+|||++..... .+.+++..|....++.-..||||++||.+..++..||.||.|+
T Consensus        67 qdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd  146 (361)
T KOG1006|consen   67 QDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMD  146 (361)
T ss_pred             HHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHh
Confidence            345567999999999999999999999999976543 4566788999988887789999999999999999999999997


Q ss_pred             CCCHHHHHH--------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee----
Q 002105          765 GKELSEVLR--------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC----  832 (966)
Q Consensus       765 ~g~L~~~l~--------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~----  832 (966)
                       -|++.+-+        .+++.-.-+|+..+..||.||-..  ..|||||+||+|||+|..+  .+|++|||+...    
T Consensus       147 -~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~--lkiIHRDvKPSNILldr~G--~vKLCDFGIcGqLv~S  221 (361)
T KOG1006|consen  147 -ISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEE--LKIIHRDVKPSNILLDRHG--DVKLCDFGICGQLVDS  221 (361)
T ss_pred             -hhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHH--hhhhhccCChhheEEecCC--CEeeecccchHhHHHH
Confidence             56665432        366766677888899999999764  4799999999999999654  579999998643    


Q ss_pred             -cCCCCcCCcccccccccCC--CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccccc
Q 002105          833 -TDSKSINSSAYVAPETKES--KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       833 -~~~~~~~~~~y~aPE~~~~--~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                       ..+..+|...|||||.+..  ..|+-+|||||+|++|||++||+.|+..-    ..+.+.......+       ||.+-
T Consensus       222 iAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w----~svfeql~~Vv~g-------dpp~l  290 (361)
T KOG1006|consen  222 IAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKW----DSVFEQLCQVVIG-------DPPIL  290 (361)
T ss_pred             HHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchH----HHHHHHHHHHHcC-------CCCee
Confidence             2344568889999998763  35899999999999999999999998642    1222323222221       22111


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .......+.-..+...+..|+-+|-.+||...++.+
T Consensus       291 ~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~  326 (361)
T KOG1006|consen  291 LFDKECVHYSFSMVRFINTCLIKDRSDRPKYDDLKK  326 (361)
T ss_pred             cCcccccccCHHHHHHHHHHhhcccccCcchhhhhc
Confidence            110100112235666777899999999999887654

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.97  E-value=2.7e-31  Score=286.21  Aligned_cols=241  Identities=27%  Similarity=0.415  Sum_probs=184.4

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCccccc--chHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTS--SFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~--~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ...+|+|++|.||+++...++..+|+|.+.........  ....|...+.+ ++||||+++++++...+..++||||+++
T Consensus         4 ~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~-l~~~~i~~~~~~~~~~~~~~~v~~~~~~   82 (260)
T PF00069_consen    4 VKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRR-LRHPNIVQILDVFQDDNYLYIVMEYCPG   82 (260)
T ss_dssp             EEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHH-HTBTTBCHEEEEEEESSEEEEEEEEETT
T ss_pred             eEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccc-cccccccccccccccccccccccccccc
Confidence            34578899999999999888889999998765433222  23446666666 5999999999999999999999999999


Q ss_pred             CCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCC
Q 002105          766 KELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSK  836 (966)
Q Consensus       766 g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~  836 (966)
                      ++|.+++.   .+++..+..++.|+++||+|||+   .+|+||||||+||+++.+  ..+++.|||.+...      ...
T Consensus        83 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~Lh~---~~i~H~dikp~NIl~~~~--~~~~l~Dfg~~~~~~~~~~~~~~  157 (260)
T PF00069_consen   83 GSLQDYLQKNKPLSEEEILKIAYQILEALAYLHS---KGIVHRDIKPENILLDEN--GEVKLIDFGSSVKLSENNENFNP  157 (260)
T ss_dssp             EBHHHHHHHHSSBBHHHHHHHHHHHHHHHHHHHH---TTEEESSBSGGGEEESTT--SEEEESSGTTTEESTSTTSEBSS
T ss_pred             cccccccccccccccccccccccccccccccccc---cccccccccccccccccc--ccccccccccccccccccccccc
Confidence            99999996   38999999999999999999995   599999999999999954  55789999987631      223


Q ss_pred             CcCCcccccccccC-CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          837 SINSSAYVAPETKE-SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       837 ~~~~~~y~aPE~~~-~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ..+++.|+|||+.. +..++.++||||+|+++|||++|+.|+..... .+.. .......... .   ..+     ....
T Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~-~~~~-~~~~~~~~~~-~---~~~-----~~~~  226 (260)
T PF00069_consen  158 FVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNS-DDQL-EIIEKILKRP-L---PSS-----SQQS  226 (260)
T ss_dssp             SSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSH-HHHH-HHHHHHHHTH-H---HHH-----TTSH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc-hhhh-hhhhhccccc-c---ccc-----cccc
Confidence            46788999999998 88899999999999999999999999875411 1111 1111100000 0   000     0000


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .....++.+++..|++.||++||++.|+++
T Consensus       227 ~~~~~~l~~li~~~l~~~p~~R~~~~~l~~  256 (260)
T PF00069_consen  227 REKSEELRDLIKKMLSKDPEQRPSAEELLK  256 (260)
T ss_dssp             TTSHHHHHHHHHHHSSSSGGGSTTHHHHHT
T ss_pred             chhHHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            001146778889999999999999999875

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2.4e-31  Score=292.49  Aligned_cols=234  Identities=22%  Similarity=0.330  Sum_probs=183.8

Q ss_pred             ccCCCCCccEEEEEEEecC-C--cEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          689 TSRGKKGVSSSYKVRSLAN-D--MQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~-~--~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ..+|.|.||+|.+|.+... |  ..||||.+...... ...+|.+|+..+.+ ++|||+|+|||+..+ ....+|||.++
T Consensus       116 e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~-L~H~hliRLyGvVl~-qp~mMV~ELap  193 (1039)
T KOG0199|consen  116 ELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLK-LQHPHLIRLYGVVLD-QPAMMVFELAP  193 (1039)
T ss_pred             HHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHh-ccCcceeEEeeeecc-chhhHHhhhcc
Confidence            3568999999999987543 3  47899998654333 66789999999999 699999999999987 77899999999


Q ss_pred             CCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC----
Q 002105          765 GKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS----  835 (966)
Q Consensus       765 ~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~----  835 (966)
                      .|+|.+.|++     +--....++|.|||.||.||.   .++.||||+...|+|+..  ...||++|||+......    
T Consensus       194 lGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLe---skrlvHRDLAARNlllas--prtVKI~DFGLmRaLg~ned~  268 (1039)
T KOG0199|consen  194 LGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLE---SKRLVHRDLAARNLLLAS--PRTVKICDFGLMRALGENEDM  268 (1039)
T ss_pred             cchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhhhheecc--cceeeeecccceeccCCCCcc
Confidence            9999999985     445666789999999999999   668999999999999986  45689999999764211    


Q ss_pred             -----CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCccccccccccc
Q 002105          836 -----KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       836 -----~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                           ...-...|.|||.+...+++.++|||+|||++|||+| |+.|+.+..+.  .+.+.+.   .+..+         
T Consensus       269 Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~--qIL~~iD---~~erL---------  334 (1039)
T KOG0199|consen  269 YVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGI--QILKNID---AGERL---------  334 (1039)
T ss_pred             eEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHH--HHHHhcc---ccccC---------
Confidence                 1122457999999999999999999999999999998 78898764221  1111110   11111         


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                         +....+...+.++|..||..+|++|||+.++.+.
T Consensus       335 ---pRPk~csedIY~imk~cWah~paDRptFsair~~  368 (1039)
T KOG0199|consen  335 ---PRPKYCSEDIYQIMKNCWAHNPADRPTFSAIRED  368 (1039)
T ss_pred             ---CCCCCChHHHHHHHHHhccCCccccccHHHHHHh
Confidence               1112344578899999999999999999999743

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.97  E-value=1.8e-30  Score=279.06  Aligned_cols=234  Identities=22%  Similarity=0.359  Sum_probs=180.2

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|+||+|.||++.  ..+..||+|+....  ...+.+..|+..+.+ ++||||+++++++..+ ..++||||+++|+
T Consensus        11 ~~~lg~g~~g~v~~~~--~~~~~~~iK~~~~~--~~~~~~~~e~~~l~~-~~~~~i~~~~~~~~~~-~~~~v~e~~~~~~   84 (254)
T cd05083          11 GEIIGEGEFGAVLQGE--YTGQKVAVKNIKCD--VTAQAFLEETAVMTK-LHHKNLVRLLGVILHN-GLYIVMELMSKGN   84 (254)
T ss_pred             eeeeccCCCCceEecc--cCCCceEEEeecCc--chHHHHHHHHHHHHh-CCCCCcCeEEEEEcCC-CcEEEEECCCCCC
Confidence            3456889999999986  47888999987532  223467788887777 7999999999998765 4799999999999


Q ss_pred             HHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC---CCcC
Q 002105          768 LSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS---KSIN  839 (966)
Q Consensus       768 L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~---~~~~  839 (966)
                      |.++++.     +++..+..++.|++.|++|||   ..+++||||||+||+++.+.  .+++.|||.+.....   ....
T Consensus        85 L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~~~H~dl~p~nili~~~~--~~kl~Dfg~~~~~~~~~~~~~~  159 (254)
T cd05083          85 LVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLE---SKKLVHRDLAARNILVSEDG--VAKVSDFGLARVGSMGVDNSKL  159 (254)
T ss_pred             HHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccCcceEEEcCCC--cEEECCCccceeccccCCCCCC
Confidence            9999862     689999999999999999999   56999999999999998654  478899998764322   2234


Q ss_pred             CcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          840 SSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       840 ~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      +..|+|||+..+..++.++|||||||++|||++ |+.||....  .....+...   .. ..   .++  ....      
T Consensus       160 ~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~--~~~~~~~~~---~~-~~---~~~--~~~~------  222 (254)
T cd05083         160 PVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMS--LKEVKECVE---KG-YR---MEP--PEGC------  222 (254)
T ss_pred             CceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCC--HHHHHHHHh---CC-CC---CCC--CCcC------
Confidence            567999999988899999999999999999998 999986431  111111111   11 10   111  1111      


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      ..++.+++.+||+.+|++||+++++++.|++
T Consensus       223 ~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  253 (254)
T cd05083         223 PADVYVLMTSCWETEPKKRPSFHKLREKLEK  253 (254)
T ss_pred             CHHHHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence            2356678889999999999999999999874

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.97  E-value=2.8e-30  Score=282.12  Aligned_cols=248  Identities=20%  Similarity=0.251  Sum_probs=180.4

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecC--CeeEEEEEccCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--KAAYLVYEYIEG  765 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--~~~~lv~Ey~~~  765 (966)
                      ..+|.|++|.||++....++..||+|++.... .........|+..+.++..||||+++++++.++  +..++||||++ 
T Consensus         5 ~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e~~~-   83 (282)
T cd07831           5 GKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFELMD-   83 (282)
T ss_pred             eeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEecCC-
Confidence            34688999999999998889999999886432 222234457777777755699999999999987  88999999998 


Q ss_pred             CCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----CC
Q 002105          766 KELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SK  836 (966)
Q Consensus       766 g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----~~  836 (966)
                      |++.+++..    ++|.+...++.|++.||+|||   ..+++||||||+||+++.   ..+++++||.+....     ..
T Consensus        84 ~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~i~H~dl~p~ni~l~~---~~~kl~dfg~~~~~~~~~~~~~  157 (282)
T cd07831          84 MNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMH---RNGIFHRDIKPENILIKD---DILKLADFGSCRGIYSKPPYTE  157 (282)
T ss_pred             ccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEcC---CCeEEEecccccccccCCCcCC
Confidence            588877753    799999999999999999999   558999999999999997   567889999875432     22


Q ss_pred             CcCCcccccccccC-CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhcc-----------Ccccccc
Q 002105          837 SINSSAYVAPETKE-SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD-----------CHLDTWV  904 (966)
Q Consensus       837 ~~~~~~y~aPE~~~-~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~  904 (966)
                      ..++..|+|||+.. +..++.++|||||||++|||++|+.||..... .+.+ .+.......           .....+.
T Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (282)
T cd07831         158 YISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNE-LDQI-AKIHDVLGTPDAEVLKKFRKSRHMNYN  235 (282)
T ss_pred             CCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCH-HHHH-HHHHHHcCCCCHHHHHhhccccccccc
Confidence            34678899999764 45578899999999999999999999965421 1111 221111100           0000000


Q ss_pred             cccccCC-Ccc-hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          905 DPFIRGH-VSS-IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       905 d~~~~~~-~~~-~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .|...+. ... ......++.+++.+|++.+|++||+++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~  278 (282)
T cd07831         236 FPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALR  278 (282)
T ss_pred             CcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhh
Confidence            1100000 000 0112356778889999999999999999875

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.97  E-value=1.4e-30  Score=284.78  Aligned_cols=250  Identities=20%  Similarity=0.265  Sum_probs=180.1

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ...+|+|++|.||+|+...+|..+|+|++....  ......+..|+..+.+ ++||||+++++++.+.+..++||||++ 
T Consensus         5 ~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~-   82 (284)
T cd07839           5 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKE-LKHKNIVRLYDVLHSDKKLTLVFEYCD-   82 (284)
T ss_pred             EEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHh-cCCCCeeeHHHHhccCCceEEEEecCC-
Confidence            345688999999999998899999999885432  2223456778877777 699999999999999999999999998 


Q ss_pred             CCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------C
Q 002105          766 KELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------S  835 (966)
Q Consensus       766 g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~  835 (966)
                      |+|.+++.    .+++.....++.||++||+|||   ..+|+||||||+||+++.+.  .+++.|||.+....      .
T Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dl~~~nil~~~~~--~~~l~dfg~~~~~~~~~~~~~  157 (284)
T cd07839          83 QDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCH---SHNVLHRDLKPQNLLINKNG--ELKLADFGLARAFGIPVRCYS  157 (284)
T ss_pred             CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEcCCC--cEEECccchhhccCCCCCCcC
Confidence            57888775    3789999999999999999999   56899999999999999654  57889999875422      1


Q ss_pred             CCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccc------cccc---
Q 002105          836 KSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLD------TWVD---  905 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~~d---  905 (966)
                      ...+++.|+|||++.+. .++.++|||||||++|||+||+.|+.......+.. +............      ...+   
T Consensus       158 ~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (284)
T cd07839         158 AEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQL-KRIFRLLGTPTEESWPGVSKLPDYKP  236 (284)
T ss_pred             CCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHH-HHHHHHhCCCChHHhHHhhhcccccc
Confidence            23567889999987664 47899999999999999999999865432222111 1111000000000      0000   


Q ss_pred             -ccccCCCc---chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          906 -PFIRGHVS---SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       906 -~~~~~~~~---~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       +.......   .......++.+++.+|++.||.+|||++|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~  280 (284)
T cd07839         237 YPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQ  280 (284)
T ss_pred             cCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence             00000000   00011235567888999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.97  E-value=1.7e-30  Score=290.22  Aligned_cols=187  Identities=19%  Similarity=0.281  Sum_probs=147.6

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc--cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .++.|.|++|.||++++..+|+.||+|.+......  ..+.+.+|+..+ +.++|||||++++++..++..++||||+++
T Consensus         5 ~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~-~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           5 EIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLS-HFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHH-HhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            34567779999999999889999999987543211  123445555444 447999999999999999999999999999


Q ss_pred             CCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-------
Q 002105          766 KELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-------  833 (966)
Q Consensus       766 g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-------  833 (966)
                      |++.++++.     +++.....++.|++.||+|||   +.+|+||||||+||+++.+.  .+++.+++.....       
T Consensus        84 ~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivHrDlkp~Nill~~~~--~~~~~~~~~~~~~~~~~~~~  158 (328)
T cd08226          84 GSANSLLKTYFPEGMSEALIGNILFGALRGLNYLH---QNGYIHRNIKASHILISGDG--LVSLSGLSHLYSLVRNGQKA  158 (328)
T ss_pred             CCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEeCCC--cEEEechHHHhhhhccCccc
Confidence            999999863     788888999999999999999   56899999999999998654  3565555432110       


Q ss_pred             ------CCCCcCCcccccccccCCC--CCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          834 ------DSKSINSSAYVAPETKESK--DITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       834 ------~~~~~~~~~y~aPE~~~~~--~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                            .....++..|||||++.+.  .++.++|||||||++|||++|+.||...
T Consensus       159 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~  213 (328)
T cd08226         159 KVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDM  213 (328)
T ss_pred             cccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence                  0011234569999998763  4789999999999999999999998754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.97  E-value=2.5e-31  Score=262.98  Aligned_cols=240  Identities=21%  Similarity=0.346  Sum_probs=178.4

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      +++...|.|..|.|+|++....|..+|||.+.... ....+.....+..+.+.-..|.||+.+|||..+...++.||.|.
T Consensus        95 ~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs  174 (391)
T KOG0983|consen   95 ENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELMS  174 (391)
T ss_pred             hhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHH
Confidence            45666799999999999999999999999997653 33344556666666664346999999999999999999999985


Q ss_pred             CCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-----CC
Q 002105          765 GKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-----DS  835 (966)
Q Consensus       765 ~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-----~~  835 (966)
                       --++..++    .+++...=++...+.+||.||-+.+  +|||||+||+|||+|+.  ..+|++|||++...     .+
T Consensus       175 -~C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeKH--~viHRDvKPSNILlDe~--GniKlCDFGIsGrlvdSkAht  249 (391)
T KOG0983|consen  175 -TCAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDER--GNIKLCDFGISGRLVDSKAHT  249 (391)
T ss_pred             -HHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHhc--ceeecccCccceEEccC--CCEEeecccccceeecccccc
Confidence             23444444    2555555578889999999997643  89999999999999965  45899999987542     34


Q ss_pred             CCcCCcccccccccCC---CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          836 KSINSSAYVAPETKES---KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~---~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                      ...|.+.|||||.+.-   ..|+-++|||||||.++||+||+.||.+...+.+.+.....    +      ..|.++++.
T Consensus       250 rsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln----~------ePP~L~~~~  319 (391)
T KOG0983|consen  250 RSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLN----E------EPPLLPGHM  319 (391)
T ss_pred             cccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHh----c------CCCCCCccc
Confidence            5678899999998764   46899999999999999999999999874333333322111    1      124443322


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVT  944 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~  944 (966)
                      . ...   .+.++...|+.+|+.+||.-.+++
T Consensus       320 g-FSp---~F~~fv~~CL~kd~r~RP~Y~~Ll  347 (391)
T KOG0983|consen  320 G-FSP---DFQSFVKDCLTKDHRKRPKYNKLL  347 (391)
T ss_pred             C-cCH---HHHHHHHHHhhcCcccCcchHHHh
Confidence            1 123   344566789999999999876654

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.97  E-value=1.2e-30  Score=286.53  Aligned_cols=239  Identities=18%  Similarity=0.291  Sum_probs=184.7

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|.|++|.||++....++..||+|++........+.+..|+..+.+ ++||||++++++|..++..|+||||+++|
T Consensus        23 ~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~-l~hp~i~~~~~~~~~~~~~~lv~e~~~~~  101 (293)
T cd06647          23 RFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRE-NKHPNIVNYLDSYLVGDELWVVMEYLAGG  101 (293)
T ss_pred             eeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhh-cCCCCeeehhheeeeCCcEEEEEecCCCC
Confidence            34457889999999999878889999998854433334557778777766 79999999999999999999999999999


Q ss_pred             CHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CCCc
Q 002105          767 ELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SKSI  838 (966)
Q Consensus       767 ~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~~~  838 (966)
                      +|.+++..  +++.++..++.+++.|++|||   +.+++||||||+||+++.+.  .+++.++|++....      ....
T Consensus       102 ~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH---~~gi~H~dL~p~Nili~~~~--~~kL~dfg~~~~~~~~~~~~~~~~  176 (293)
T cd06647         102 SLTDVVTETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDG--SVKLTDFGFCAQITPEQSKRSTMV  176 (293)
T ss_pred             cHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH---hCCEeeccCCHHHEEEcCCC--CEEEccCcceeccccccccccccc
Confidence            99999974  789999999999999999999   55899999999999998654  46888998764321      1235


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      +++.|+|||......++.++|||||||++||+++|+.||....... .+..+    .... .     |..    ......
T Consensus       177 ~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~-~~~~~----~~~~-~-----~~~----~~~~~~  241 (293)
T cd06647         177 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR-ALYLI----ATNG-T-----PEL----QNPEKL  241 (293)
T ss_pred             CChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhh-heeeh----hcCC-C-----CCC----CCcccc
Confidence            7788999999988889999999999999999999999996532111 11000    0000 0     000    000111


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      ..++.+++..||+.+|++||++.+++..
T Consensus       242 ~~~l~~li~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         242 SAIFRDFLNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            2346678889999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.97  E-value=2.5e-30  Score=283.93  Aligned_cols=251  Identities=22%  Similarity=0.341  Sum_probs=181.3

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .....+|.|++|.||++....++..||+|.+..... .....+.+|+..+.+ ++||||+++++++.+++..++||||++
T Consensus         8 ~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~   86 (291)
T cd07844           8 KKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKD-LKHANIVTLHDIIHTKKTLTLVFEYLD   86 (291)
T ss_pred             eEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhh-CCCcceeeEEEEEecCCeEEEEEecCC
Confidence            344567889999999999987899999999864322 223345677777766 799999999999999999999999998


Q ss_pred             CCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          765 GKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       765 ~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                       ++|.+++..    +++.....++.|+++||+|||   ..+|+||||||+||+++.+.  .++++|||.+....      
T Consensus        87 -~~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH---~~~i~H~dl~p~nil~~~~~--~~kl~dfg~~~~~~~~~~~~  160 (291)
T cd07844          87 -TDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCH---QRRVLHRDLKPQNLLISERG--ELKLADFGLARAKSVPSKTY  160 (291)
T ss_pred             -CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccCCHHHEEEcCCC--CEEECccccccccCCCCccc
Confidence             499998853    688899999999999999999   55899999999999999765  47889999865321      


Q ss_pred             CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccc----------
Q 002105          835 SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTW----------  903 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  903 (966)
                      ....++..|+|||+..+ ..++.++||||+||++|||++|+.||.......+.+ +.............|          
T Consensus       161 ~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  239 (291)
T cd07844         161 SNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQL-HKIFRVLGTPTEETWPGVSSNPEFK  239 (291)
T ss_pred             cccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHH-HHHHHhcCCCChhhhhhhhhccccc
Confidence            12245778999998765 458899999999999999999999986543211111 111000000000000          


Q ss_pred             --c-----cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          904 --V-----DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       904 --~-----d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                        .     ...+....... ....+..+++.+|++.+|++|||+.|++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~L~~~p~~Rps~~e~l~  287 (291)
T cd07844         240 PYSFPFYPPRPLINHAPRL-DRIPHGEELALKFLQYEPKKRISAAEAMK  287 (291)
T ss_pred             cccccccCChhHHHhCcCC-CCchhHHHHHHHHhccCcccccCHHHHhc
Confidence              0     00000000000 11145677889999999999999999874

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.97  E-value=8e-31  Score=287.66  Aligned_cols=238  Identities=18%  Similarity=0.291  Sum_probs=184.8

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|+|++|.||++....++..||+|++..........+..|+..+.+ ++|||||++++++..++..++||||++++
T Consensus        24 ~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  102 (292)
T cd06657          24 NFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRD-YQHENVVEMYNSYLVGDELWVVMEFLEGG  102 (292)
T ss_pred             hHHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHh-cCCcchhheeeEEEeCCEEEEEEecCCCC
Confidence            34567999999999999988999999998854433334457778877766 79999999999999999999999999999


Q ss_pred             CHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CCCc
Q 002105          767 ELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SKSI  838 (966)
Q Consensus       767 ~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~~~  838 (966)
                      +|.+++.  .+++.....++.|++.|++|||   ..+++||||||+||+++.+.  .+++.|||.+....      ....
T Consensus       103 ~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~~givH~dl~p~Nilv~~~~--~~~l~dfg~~~~~~~~~~~~~~~~  177 (292)
T cd06657         103 ALTDIVTHTRMNEEQIAAVCLAVLKALSVLH---AQGVIHRDIKSDSILLTHDG--RVKLSDFGFCAQVSKEVPRRKSLV  177 (292)
T ss_pred             cHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCC--CEEEcccccceecccccccccccc
Confidence            9999885  4789999999999999999999   55899999999999999764  47888988764321      1135


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      +++.|+|||+..+..++.++|||||||++|||++|+.||.....  ...........         .+.+.. .   ...
T Consensus       178 ~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~--~~~~~~~~~~~---------~~~~~~-~---~~~  242 (292)
T cd06657         178 GTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDNL---------PPKLKN-L---HKV  242 (292)
T ss_pred             cCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhhC---------CcccCC-c---ccC
Confidence            78889999999888889999999999999999999999864311  11111111111         011100 0   011


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ..++.+++.+|++.+|.+||++.||+.
T Consensus       243 ~~~l~~li~~~l~~~P~~R~~~~~ll~  269 (292)
T cd06657         243 SPSLKGFLDRLLVRDPAQRATAAELLK  269 (292)
T ss_pred             CHHHHHHHHHHHhCCcccCcCHHHHhc
Confidence            124556778999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.97  E-value=2e-30  Score=279.06  Aligned_cols=235  Identities=19%  Similarity=0.312  Sum_probs=182.6

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ..+|.|++|.||++....+|..+|+|.+....  ....+.+.+|+..+.+ ++||||+++++++..++..++||||++++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~-~~h~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (257)
T cd08225           6 KKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAK-MKHPNIVTFFASFQENGRLFIVMEYCDGG   84 (257)
T ss_pred             EEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHh-CCCCChhhhhheeccCCeEEEEEecCCCC
Confidence            34688899999999998889999999885432  1233456778777766 69999999999999999999999999999


Q ss_pred             CHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC------
Q 002105          767 ELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS------  835 (966)
Q Consensus       767 ~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~------  835 (966)
                      +|.+++..     ++|..+..++.|+++||+|||   ..+++|+||||+||+++++. ..++++++|.+.....      
T Consensus        85 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~H~dl~~~nil~~~~~-~~~~l~d~~~~~~~~~~~~~~~  160 (257)
T cd08225          85 DLMKRINRQRGVLFSEDQILSWFVQISLGLKHIH---DRKILHRDIKSQNIFLSKNG-MVAKLGDFGIARQLNDSMELAY  160 (257)
T ss_pred             cHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEcCCC-CeEEecccccchhccCCccccc
Confidence            99999853     689999999999999999999   55899999999999998653 3467888887643211      


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...|++.|+|||+..+..++.++|||||||++|||++|+.|+..... .    ++....... .    ..+. ....   
T Consensus       161 ~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-~----~~~~~~~~~-~----~~~~-~~~~---  226 (257)
T cd08225         161 TCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNL-H----QLVLKICQG-Y----FAPI-SPNF---  226 (257)
T ss_pred             ccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccH-H----HHHHHHhcc-c----CCCC-CCCC---
Confidence            22478889999999888899999999999999999999999864311 1    222221111 1    1111 1111   


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .   .++.+++.+|++.+|++|||+.||++
T Consensus       227 ~---~~~~~~i~~~l~~~p~~Rpt~~~ll~  253 (257)
T cd08225         227 S---RDLRSLISQLFKVSPRDRPSITSILK  253 (257)
T ss_pred             C---HHHHHHHHHHhccChhhCcCHHHHhh
Confidence            1   24667778999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.97  E-value=4.9e-31  Score=296.66  Aligned_cols=250  Identities=21%  Similarity=0.283  Sum_probs=180.3

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecC------CeeEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE------KAAYL  758 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~------~~~~l  758 (966)
                      ....+|+|++|.||+|+...++..||||++....  ....+.+.+|+..+.+ ++|||||++++++...      ...|+
T Consensus        19 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~~~~~~~   97 (343)
T cd07878          19 NLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKH-MKHENVIGLLDVFTPATSIENFNEVYL   97 (343)
T ss_pred             hheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHh-cCCCchhhhhhhhcccccccccCcEEE
Confidence            3456799999999999998899999999985432  1223456678877777 7999999999988643      45799


Q ss_pred             EEEccCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          759 VYEYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      +|||+ +++|.++++  .+++.....++.|++.||+|||   ..+|+||||||+||+++.+.  .++++|||++....  
T Consensus        98 ~~~~~-~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrdikp~Nil~~~~~--~~kl~Dfg~~~~~~~~  171 (343)
T cd07878          98 VTNLM-GADLNNIVKCQKLSDEHVQFLIYQLLRGLKYIH---SAGIIHRDLKPSNVAVNEDC--ELRILDFGLARQADDE  171 (343)
T ss_pred             EeecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecccCChhhEEECCCC--CEEEcCCccceecCCC
Confidence            99998 789998886  4899999999999999999999   55899999999999999754  47889999876532  


Q ss_pred             -CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhc----------cCcccc
Q 002105          835 -SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYS----------DCHLDT  902 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~----------~~~~~~  902 (966)
                       ....+|+.|+|||++.+ ..++.++|||||||++|||++|+.||.+... .+.+..+....-.          ......
T Consensus       172 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (343)
T cd07878         172 MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDY-IDQLKRIMEVVGTPSPEVLKKISSEHARK  250 (343)
T ss_pred             cCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHHhCCCCHHHHHhcchhhHHH
Confidence             23467899999999876 5689999999999999999999999865321 1111111110000          000000


Q ss_pred             cccccccCCCcc-hH----HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          903 WVDPFIRGHVSS-IQ----NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       903 ~~d~~~~~~~~~-~~----~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +.. .+...... ..    .....+.+++.+|++.||++|||++|++.
T Consensus       251 ~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~  297 (343)
T cd07878         251 YIQ-SLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALA  297 (343)
T ss_pred             Hhh-ccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            000 00000000 00    00123567889999999999999999984

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.97  E-value=2.4e-30  Score=278.46  Aligned_cols=234  Identities=24%  Similarity=0.371  Sum_probs=181.7

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcc-----cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-----TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-----~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .+|.|++|.||+|....++..||+|.+......     ..+.+..|+..+.+ ++||||+++++++..++..++||||++
T Consensus         7 ~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~-~~h~~i~~~~~~~~~~~~~~lv~e~~~   85 (258)
T cd06632           7 LLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSK-LQHPNIVQYLGTEREEDNLYIFLELVP   85 (258)
T ss_pred             eeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHh-cCCCCchheeeeEecCCeEEEEEEecC
Confidence            468889999999998778999999988643321     22457778877777 699999999999999999999999999


Q ss_pred             CCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----CC
Q 002105          765 GKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SK  836 (966)
Q Consensus       765 ~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----~~  836 (966)
                      +++|.++++.   +++.....++.|+++|++|||   ..+|+|+||||+||+++.+.  .+++.|+|.+....     ..
T Consensus        86 ~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~~~ni~~~~~~--~~kl~d~~~~~~~~~~~~~~~  160 (258)
T cd06632          86 GGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLH---DRNTVHRDIKGANILVDTNG--VVKLADFGMAKQVVEFSFAKS  160 (258)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCC--CEEEccCccceeccccccccc
Confidence            9999999964   789999999999999999999   55899999999999998654  57888998765422     23


Q ss_pred             CcCCcccccccccCCCC-CCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          837 SINSSAYVAPETKESKD-ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~-~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ..+++.|+|||...... ++.++|+|||||++|||++|+.||.... .......+..    ....     +.+....   
T Consensus       161 ~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~-~~~~~~~~~~----~~~~-----~~~~~~~---  227 (258)
T cd06632         161 FKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLE-GVAAVFKIGR----SKEL-----PPIPDHL---  227 (258)
T ss_pred             cCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCc-HHHHHHHHHh----cccC-----CCcCCCc---
Confidence            45788899999987766 8999999999999999999999986532 1111111111    0011     1111111   


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         ..++.+++.+|++.+|++||++.|++.
T Consensus       228 ---~~~~~~li~~~l~~~p~~Rp~~~~~l~  254 (258)
T cd06632         228 ---SDEAKDFILKCLQRDPSLRPTAAELLE  254 (258)
T ss_pred             ---CHHHHHHHHHHhhcCcccCcCHHHHhc
Confidence               124556778999999999999999875

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.97  E-value=1.4e-30  Score=284.62  Aligned_cols=236  Identities=17%  Similarity=0.270  Sum_probs=178.6

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEec------CCeeEEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS------EKAAYLVYE  761 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~------~~~~~lv~E  761 (966)
                      ...+|.|++|.||+|+...++..+|+|...... ....++..|+..+.+..+||||+++++++..      .+..|+|||
T Consensus        21 ~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e   99 (282)
T cd06636          21 VEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVME   99 (282)
T ss_pred             heeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCCEEEEEEE
Confidence            345689999999999998888999999874432 2334577788877775579999999999853      457899999


Q ss_pred             ccCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          762 YIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       762 y~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      |+++|+|.+++..     +++.....++.|++.|++|||   ..+|+||||||+||+++++.  .+++.|||.+....  
T Consensus       100 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~ivH~dl~~~nili~~~~--~~~l~dfg~~~~~~~~  174 (282)
T cd06636         100 FCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLH---AHKVIHRDIKGQNVLLTENA--EVKLVDFGVSAQLDRT  174 (282)
T ss_pred             eCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCC--CEEEeeCcchhhhhcc
Confidence            9999999998853     678888899999999999999   55899999999999999654  47889998865321  


Q ss_pred             ----CCCcCCcccccccccC-----CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccc
Q 002105          835 ----SKSINSSAYVAPETKE-----SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVD  905 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  905 (966)
                          ....+++.|+|||.+.     ...++.++|||||||++|||+||+.||..... ...+..     ....     ..
T Consensus       175 ~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~-~~~~~~-----~~~~-----~~  243 (282)
T cd06636         175 VGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHP-MRALFL-----IPRN-----PP  243 (282)
T ss_pred             ccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCH-Hhhhhh-----HhhC-----CC
Confidence                2345788999999875     35688899999999999999999999864311 111100     0000     01


Q ss_pred             ccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       906 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +.+..     .....++.+++.+||+.||.+||++.|+++
T Consensus       244 ~~~~~-----~~~~~~~~~li~~cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         244 PKLKS-----KKWSKKFIDFIEGCLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             CCCcc-----cccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence            11100     011235677888999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.4e-30  Score=281.84  Aligned_cols=237  Identities=18%  Similarity=0.299  Sum_probs=181.8

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcC---CCceeEEeeEEecCCeeEEEEEcc
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIM---HPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~---H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ...+|.|++|.||+|....++..||+|.+.... ....+++.+|+..+.+ ++   ||||+++++++..++..++||||+
T Consensus         6 ~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~-l~~~~~~~vi~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06917           6 LELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQ-LRQSQPPNITKYYGSYLKGPRLWIIMEYA   84 (277)
T ss_pred             hhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHH-hccCCCCCeeeEeeeeeeCCEEEEEEecC
Confidence            345688999999999998899999999875432 2223456677776666 45   999999999999999999999999


Q ss_pred             CCCCHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------C
Q 002105          764 EGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------S  835 (966)
Q Consensus       764 ~~g~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~  835 (966)
                      ++++|.++++.  ++|.....++.+++.||+|||   ..+|+||||||+||+++.+  ..++++|+|.+....      .
T Consensus        85 ~~~~L~~~~~~~~l~~~~~~~i~~~i~~~l~~lh---~~~i~H~dl~p~ni~i~~~--~~~~l~dfg~~~~~~~~~~~~~  159 (277)
T cd06917          85 EGGSVRTLMKAGPIAEKYISVIIREVLVALKYIH---KVGVIHRDIKAANILVTNT--GNVKLCDFGVAALLNQNSSKRS  159 (277)
T ss_pred             CCCcHHHHHHccCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcCHHHEEEcCC--CCEEEccCCceeecCCCccccc
Confidence            99999999864  789999999999999999999   5699999999999999974  457889999875422      1


Q ss_pred             CCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          836 KSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ...|+..|+|||+..+ ..++.++|||||||++|||++|+.||..... .    ++.. .....     ..|.+...   
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~-~----~~~~-~~~~~-----~~~~~~~~---  225 (277)
T cd06917         160 TFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDA-F----RAMM-LIPKS-----KPPRLEDN---  225 (277)
T ss_pred             cccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCCh-h----hhhh-ccccC-----CCCCCCcc---
Confidence            2357788999998765 4468999999999999999999999865321 1    1111 00110     11111111   


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                        ....++.+++.+|++.||++||++.|+++.
T Consensus       226 --~~~~~~~~~i~~~l~~~p~~R~~~~~il~~  255 (277)
T cd06917         226 --GYSKLLREFVAACLDEEPKERLSAEELLKS  255 (277)
T ss_pred             --cCCHHHHHHHHHHcCCCcccCcCHHHHhhC
Confidence              012356678889999999999999999763

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.97  E-value=4.1e-30  Score=280.02  Aligned_cols=236  Identities=18%  Similarity=0.299  Sum_probs=183.4

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ...+|.|++|.||++....++..||+|....... ...+.+.+|+..+.+ ++|||||++++++..++..|+||||+++|
T Consensus         9 ~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   87 (277)
T cd06641           9 LEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQ-CDSPYVTKYYGSYLKDTKLWIIMEYLGGG   87 (277)
T ss_pred             heeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHh-cCCCCEeEEEEEEEeCCeEEEEEEeCCCC
Confidence            3457889999999999878899999998753322 222456677777777 79999999999999999999999999999


Q ss_pred             CHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC------CCc
Q 002105          767 ELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS------KSI  838 (966)
Q Consensus       767 ~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~------~~~  838 (966)
                      +|.++++.  +++.....++.+++.|++|||   ..+++|+||||+||+++.+.  .+++.|+|++.....      ...
T Consensus        88 ~l~~~i~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~Ni~i~~~~--~~~l~dfg~~~~~~~~~~~~~~~~  162 (277)
T cd06641          88 SALDLLEPGPLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHG--EVKLADFGVAGQLTDTQIKRNTFV  162 (277)
T ss_pred             cHHHHHhcCCCCHHHHHHHHHHHHHHHHHHc---cCCeecCCCCHHhEEECCCC--CEEEeecccceecccchhhhcccc
Confidence            99999964  789999999999999999999   56999999999999998664  467888987654221      235


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      ++..|+|||+..+..++.++|||||||++|||++|+.|+.....  .   .+.... ....     .+.+.+.+      
T Consensus       163 ~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~--~---~~~~~~-~~~~-----~~~~~~~~------  225 (277)
T cd06641         163 GTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHP--M---KVLFLI-PKNN-----PPTLEGNY------  225 (277)
T ss_pred             CCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccch--H---HHHHHH-hcCC-----CCCCCccc------
Confidence            67889999999888889999999999999999999999864211  1   111111 1111     11111111      


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      ..++.+++.+|++.+|.+||+|.+++..
T Consensus       226 ~~~~~~~i~~~l~~~p~~Rp~~~~~l~~  253 (277)
T cd06641         226 SKPLKEFVEACLNKEPSFRPTAKELLKH  253 (277)
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            2346677889999999999999999873

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.97  E-value=2.9e-30  Score=279.30  Aligned_cols=234  Identities=17%  Similarity=0.263  Sum_probs=175.4

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc-----cccchHHHHHHHHhhcCCCceeEEeeEEecC--CeeEEEEE
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-----TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--KAAYLVYE  761 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-----~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--~~~~lv~E  761 (966)
                      ..+|+|++|.||+++...++..||+|++......     ..+.+.+|+..+.+ ++||||+++++++.++  ...++|||
T Consensus         8 ~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~~~~v~e   86 (265)
T cd06652           8 KLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKN-LLHERIVQYYGCLRDPMERTLSIFME   86 (265)
T ss_pred             eEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHh-cCCCCeeeEEeEeccCCCceEEEEEE
Confidence            3467889999999999888999999987532211     12345667777766 6999999999998763  56889999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-----
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-----  833 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-----  833 (966)
                      |+++|+|.+++.   .+++....+++.|++.||+|||   +.+|+|+||||+||+++.+.  .+++.|||.+...     
T Consensus        87 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nil~~~~~--~~~l~Dfg~~~~~~~~~~  161 (265)
T cd06652          87 HMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLH---SNMIVHRDIKGANILRDSVG--NVKLGDFGASKRLQTICL  161 (265)
T ss_pred             ecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEecCCC--CEEECcCccccccccccc
Confidence            999999999985   3788888999999999999999   55899999999999998654  4688899876531     


Q ss_pred             ----CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccccc
Q 002105          834 ----DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       834 ----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                          .....++..|+|||+..+..++.++|||||||++|||++|+.||.... ....+   .. .....     ..+...
T Consensus       162 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~-~~~~~---~~-~~~~~-----~~~~~~  231 (265)
T cd06652         162 SGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFE-AMAAI---FK-IATQP-----TNPVLP  231 (265)
T ss_pred             cccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccc-hHHHH---HH-HhcCC-----CCCCCc
Confidence                122357789999999988889999999999999999999999986431 11111   11 00000     111111


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                            ......+.+++.+|+. +|++||+++||+.
T Consensus       232 ------~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~  260 (265)
T cd06652         232 ------PHVSDHCRDFLKRIFV-EAKLRPSADELLR  260 (265)
T ss_pred             ------hhhCHHHHHHHHHHhc-ChhhCCCHHHHhc
Confidence                  1112345566677874 8999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.97  E-value=1.9e-30  Score=283.75  Aligned_cols=247  Identities=21%  Similarity=0.290  Sum_probs=179.9

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      +..+|.|++|.||+|+...++..||||++.....  .....+..|++.+.+ ++||||+++++++.+++..++||||++ 
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~~v~e~~~-   82 (284)
T cd07860           5 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE-LNHPNIVKLLDVIHTENKLYLVFEFLH-   82 (284)
T ss_pred             eeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHh-cCCCCCcchhhhcccCCcEEEEeeccc-
Confidence            4456889999999999988999999998854322  223457788888877 699999999999999999999999996 


Q ss_pred             CCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          766 KELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       766 g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      ++|.+++.     .+++.....++.|+++||+|||   ..+++||||||+||+++.+.  .+++.++|.+....      
T Consensus        83 ~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh---~~~i~H~~l~p~nill~~~~--~~~l~dfg~~~~~~~~~~~~  157 (284)
T cd07860          83 QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEG--AIKLADFGLARAFGVPVRTY  157 (284)
T ss_pred             cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCC--CEEEeeccchhhcccCcccc
Confidence            68998885     3789999999999999999999   55899999999999999765  46888888765321      


Q ss_pred             CCCcCCcccccccccCCCC-CCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccC---------------
Q 002105          835 SKSINSSAYVAPETKESKD-ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDC---------------  898 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~-~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~---------------  898 (966)
                      ....+++.|+|||+..+.. ++.++|||||||++|||+||+.||..+... +...+..+..-...               
T Consensus       158 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (284)
T cd07860         158 THEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI-DQLFRIFRTLGTPDEVVWPGVTSLPDYKP  236 (284)
T ss_pred             ccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHhCCCChhhhhhhhHHHHHHh
Confidence            1234577899999876544 688999999999999999999998654221 11111111100000               


Q ss_pred             cccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          899 HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       899 ~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ....+.........+.   ...++.+++.+|++.||++|||++|+++
T Consensus       237 ~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~~P~~Rpt~~~~l~  280 (284)
T cd07860         237 SFPKWARQDFSKVVPP---LDEDGRDLLSQMLHYDPNKRISAKAALA  280 (284)
T ss_pred             hcccccccCHHHHccc---CCHHHHHHHHHhcCCCcccCCCHHHHhc
Confidence            0000000000000000   0124567888999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=7.8e-31  Score=278.95  Aligned_cols=233  Identities=25%  Similarity=0.356  Sum_probs=186.5

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      .+|+|.|++|-.|++.-+|..||||.+.+.  +.......++||+- +|+.+|||||++|++......+|||.|.-++|+
T Consensus        25 TlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRC-MKLVQHpNiVRLYEViDTQTKlyLiLELGD~GD  103 (864)
T KOG4717|consen   25 TLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRC-MKLVQHPNIVRLYEVIDTQTKLYLILELGDGGD  103 (864)
T ss_pred             hhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHH-HHHhcCcCeeeeeehhcccceEEEEEEecCCch
Confidence            468889998999999999999999988654  33445567788765 566899999999999999999999999999999


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----CCCc
Q 002105          768 LSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SKSI  838 (966)
Q Consensus       768 L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----~~~~  838 (966)
                      |.+||-    .+.+....+++.||..|+.|+|   ...|||||+||+||.+-+. ...+|+.|||+.....     ...+
T Consensus       104 l~DyImKHe~Gl~E~La~kYF~QI~~AI~YCH---qLHVVHRDLKPENVVFFEK-lGlVKLTDFGFSNkf~PG~kL~TsC  179 (864)
T KOG4717|consen  104 LFDYIMKHEEGLNEDLAKKYFAQIVHAISYCH---QLHVVHRDLKPENVVFFEK-LGLVKLTDFGFSNKFQPGKKLTTSC  179 (864)
T ss_pred             HHHHHHhhhccccHHHHHHHHHHHHHHHHHHh---hhhhhcccCCcceeEEeee-cCceEeeeccccccCCCcchhhccc
Confidence            999994    4888899999999999999999   5579999999999988753 4568999999975422     3468


Q ss_pred             CCcccccccccCCCCCCC-cchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          839 NSSAYVAPETKESKDITE-KGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~-~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      |+..|-|||++.+..|+. ++||||+|||||-|++|++||+..... +.+ ..    +.++...      ++      ..
T Consensus       180 GSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDS-ETL-Tm----ImDCKYt------vP------sh  241 (864)
T KOG4717|consen  180 GSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDS-ETL-TM----IMDCKYT------VP------SH  241 (864)
T ss_pred             chhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccch-hhh-hh----hhccccc------Cc------hh
Confidence            899999999999999975 789999999999999999999754221 111 11    1111111      11      22


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .-.++.+++.+.++.||.+|.+.+||+.
T Consensus       242 vS~eCrdLI~sMLvRdPkkRAslEeI~s  269 (864)
T KOG4717|consen  242 VSKECRDLIQSMLVRDPKKRASLEEIVS  269 (864)
T ss_pred             hhHHHHHHHHHHHhcCchhhccHHHHhc
Confidence            2346777788889999999999999985

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.97  E-value=3.8e-30  Score=277.98  Aligned_cols=239  Identities=20%  Similarity=0.347  Sum_probs=187.6

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ...+|.||+|.||+|....++..||+|++..... ...+.+..|+..+.+ ++||||+++++++..++..++||||++++
T Consensus         6 ~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (264)
T cd06623           6 VKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRS-CESPYVVKCYGAFYKEGEISIVLEYMDGG   84 (264)
T ss_pred             eeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHh-cCCCCeeeEEEEEccCCeEEEEEEecCCC
Confidence            3456888999999999988899999998865433 334568888888888 68999999999999999999999999999


Q ss_pred             CHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCC-CCeEeecCCCCcEEEcCCCCceEEEeccccceecCC------C
Q 002105          767 ELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCS-PSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS------K  836 (966)
Q Consensus       767 ~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~-~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~------~  836 (966)
                      +|.+++..   +++..+.+++.|+++|++|||   . .+++||||||+||+++.+.  .+++.|||.+.....      .
T Consensus        85 ~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh---~~~~~~H~~l~~~ni~~~~~~--~~~l~df~~~~~~~~~~~~~~~  159 (264)
T cd06623          85 SLADLLKKVGKIPEPVLAYIARQILKGLDYLH---TKRHIIHRDIKPSNLLINSKG--EVKIADFGISKVLENTLDQCNT  159 (264)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh---ccCCCccCCCCHHHEEECCCC--CEEEccCccceecccCCCcccc
Confidence            99999963   889999999999999999999   5 6999999999999998754  468888887754321      2


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCC-chhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFG-VHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ..++..|+|||...+..++.++||||||+++|||+||+.|+..... ......++..   ..      ..+.....    
T Consensus       160 ~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~---~~------~~~~~~~~----  226 (264)
T cd06623         160 FVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAIC---DG------PPPSLPAE----  226 (264)
T ss_pred             eeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHh---cC------CCCCCCcc----
Confidence            3467789999999988999999999999999999999999865421 1111112211   10      01111111    


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                       .....+.+++..|++.+|++||++.|+++.
T Consensus       227 -~~~~~l~~li~~~l~~~p~~R~~~~~ll~~  256 (264)
T cd06623         227 -EFSPEFRDFISACLQKDPKKRPSAAELLQH  256 (264)
T ss_pred             -cCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence             011356677789999999999999999863

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.97  E-value=6.8e-30  Score=278.38  Aligned_cols=235  Identities=20%  Similarity=0.239  Sum_probs=176.1

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCccc---ccchHHHHHH--HHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---TSSFWPDVSQ--FGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---~~~~~~e~~~--~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      +|+|++|.||+++...+++.||+|.+.......   ...+..|...  +.+...||||+++++++.+++..++||||++|
T Consensus         2 ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~g   81 (278)
T cd05606           2 IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNG   81 (278)
T ss_pred             cccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCCC
Confidence            588999999999998889999999886532211   1123333222  22224799999999999999999999999999


Q ss_pred             CCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----CCCc
Q 002105          766 KELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----SKSI  838 (966)
Q Consensus       766 g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----~~~~  838 (966)
                      |+|.+++.   .++|..+..++.|+++|++|||   +.+|+||||||+||+++.+.  .++++|||.+....    ....
T Consensus        82 ~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~di~p~nili~~~~--~~kl~dfg~~~~~~~~~~~~~~  156 (278)
T cd05606          82 GDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHG--HVRISDLGLACDFSKKKPHASV  156 (278)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCCCCHHHEEECCCC--CEEEccCcCccccCccCCcCcC
Confidence            99999885   3799999999999999999999   56899999999999999754  47889999865322    2346


Q ss_pred             CCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          839 NSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       839 ~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      |+..|+|||+..++ .++.++||||+||++|||++|+.||..............   ...      .++.+....     
T Consensus       157 ~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~---~~~------~~~~~~~~~-----  222 (278)
T cd05606         157 GTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRM---TLT------MAVELPDSF-----  222 (278)
T ss_pred             CCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHHH---hhc------cCCCCCCcC-----
Confidence            78999999998754 689999999999999999999999975422111110110   000      111111111     


Q ss_pred             HHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARP-----CASDVTK  945 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RP-----t~~~v~~  945 (966)
                       ..++.+++.+|++.+|++||     ++.|+++
T Consensus       223 -s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~  254 (278)
T cd05606         223 -SPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  254 (278)
T ss_pred             -CHHHHHHHHHHhhcCHHhccCCCCCCHHHHHh
Confidence             13566677899999999999     8888874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.97  E-value=3.5e-30  Score=282.74  Aligned_cols=253  Identities=21%  Similarity=0.258  Sum_probs=180.8

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc-ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT-TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~-~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      +.....+|+|++|.||+|....++..||+|++....... ...+.+|+..+.+ ++||||+++++++..++..|+||||+
T Consensus         7 y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~-l~h~ni~~~~~~~~~~~~~~lv~e~~   85 (291)
T cd07870           7 YLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKG-LKHANIVLLHDIIHTKETLTFVFEYM   85 (291)
T ss_pred             eEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHh-cCCCCEeEEEEEEecCCeEEEEEecc
Confidence            344556799999999999998889999999885443222 2346677777777 79999999999999999999999999


Q ss_pred             CCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          764 EGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       764 ~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      + +++.+++.    .+++.....++.|++.||+|||   ..+|+||||||+||+++.+.  .++++|||.+....     
T Consensus        86 ~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dlkp~Nil~~~~~--~~~l~Dfg~~~~~~~~~~~  159 (291)
T cd07870          86 H-TDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIH---GQHILHRDLKPQNLLISYLG--ELKLADFGLARAKSIPSQT  159 (291)
T ss_pred             c-CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHHEEEcCCC--cEEEeccccccccCCCCCC
Confidence            6 67776664    2678888899999999999999   45899999999999998654  57889999875421     


Q ss_pred             -CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhcc-------------Cc
Q 002105          835 -SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD-------------CH  899 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-------------~~  899 (966)
                       ....+++.|+|||+..+ ..++.++|||||||++|||+||+.||.......+.+.+. ......             ..
T Consensus       160 ~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  238 (291)
T cd07870         160 YSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKI-WTVLGVPTEDTWPGVSKLPNY  238 (291)
T ss_pred             CCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHH-HHHcCCCChhhhhhhhhcccc
Confidence             22346788999999865 457889999999999999999999997543222221111 100000             00


Q ss_pred             ccccccccccCCCcc---hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          900 LDTWVDPFIRGHVSS---IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       900 ~~~~~d~~~~~~~~~---~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ...+...........   ......++.+++.+|++.||++|||+.|++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~  287 (291)
T cd07870         239 KPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALL  287 (291)
T ss_pred             cchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhc
Confidence            000000000000000   0011235667888999999999999999864

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.97  E-value=3.7e-30  Score=281.71  Aligned_cols=248  Identities=19%  Similarity=0.260  Sum_probs=182.4

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ..+|.|++|.||+|+...+|..||+|++....  ......+.+|+..+.+ ++||||+++++++..++..++||||+ ++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~-~~~~~i~~~~~~~~~~~~~~~v~e~~-~~   83 (286)
T cd07832           6 GRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQA-CQHPYVVKLLDVFPHGSGFVLVMEYM-PS   83 (286)
T ss_pred             eecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHh-CCCCCCcceeeEEecCCeeEEEeccc-CC
Confidence            34688999999999998889999999986543  2223467788877777 69999999999999999999999999 99


Q ss_pred             CHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-------C
Q 002105          767 ELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------S  835 (966)
Q Consensus       767 ~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-------~  835 (966)
                      +|.++++.    +++.++..++.||++||+|||   +.+++|+||||+||+++.+  ..+++.|+|.+....       .
T Consensus        84 ~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~~~~~--~~~~l~dfg~~~~~~~~~~~~~~  158 (286)
T cd07832          84 DLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMH---ANGIMHRDLKPANLLISAD--GVLKIADFGLARLFSEEEPRLYS  158 (286)
T ss_pred             CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCHHHEEEcCC--CcEEEeeeeecccccCCCCCccc
Confidence            99999853    789999999999999999999   5589999999999999974  446788888765432       1


Q ss_pred             CCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcc---------ccc--
Q 002105          836 KSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHL---------DTW--  903 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--  903 (966)
                      ...++..|+|||++.+. .++.++||||+||++|||+||++||..... .+.. .+..........         ..+  
T Consensus       159 ~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (286)
T cd07832         159 HQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGEND-IEQL-AIVFRTLGTPNEETWPGLTSLPDYNK  236 (286)
T ss_pred             cccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCH-HHHH-HHHHHHcCCCChHHHhhccCcchhhc
Confidence            24578899999988654 468999999999999999999888765422 1111 111111110000         000  


Q ss_pred             -ccccccCC-Ccc-hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          904 -VDPFIRGH-VSS-IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       904 -~d~~~~~~-~~~-~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       ..+..... ... ..+...++.+++.+|++.+|++|||+++++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~  281 (286)
T cd07832         237 ITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALR  281 (286)
T ss_pred             ccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhh
Confidence             00000000 000 0011256778889999999999999999875

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.97  E-value=4.1e-30  Score=277.78  Aligned_cols=237  Identities=24%  Similarity=0.336  Sum_probs=182.1

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc--cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ..+|+|++|.||++....++..||+|.+......  ..+.+..|+..+.+ ++||||+++++++...+..++|+||++++
T Consensus         6 ~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~-l~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (264)
T cd06626           6 NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLEL-LKHPNLVKYYGVEVHREKVYIFMEYCSGG   84 (264)
T ss_pred             eEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHh-CCCCChhheeeeEecCCEEEEEEecCCCC
Confidence            4568899999999998778999999988654332  34567788877777 69999999999999999999999999999


Q ss_pred             CHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC--------
Q 002105          767 ELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--------  835 (966)
Q Consensus       767 ~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~--------  835 (966)
                      +|.++++.   +++..+..++.+++.|++|||   +.+|+||||||+||+++++.  .++++++|.+.....        
T Consensus        85 ~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh---~~~i~H~dl~~~nil~~~~~--~~kl~d~g~~~~~~~~~~~~~~~  159 (264)
T cd06626          85 TLEELLEHGRILDEHVIRVYTLQLLEGLAYLH---SHGIVHRDIKPANIFLDHNG--VIKLGDFGCAVKLKNNTTTMGEE  159 (264)
T ss_pred             cHHHHHhhcCCCChHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCC--CEEEcccccccccCCCCCccccc
Confidence            99999863   789999999999999999999   55899999999999999744  568889987654211        


Q ss_pred             --CCcCCcccccccccCCCC---CCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          836 --KSINSSAYVAPETKESKD---ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       836 --~~~~~~~y~aPE~~~~~~---~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                        ...+++.|+|||+..+..   ++.++||||||+++||+++|+.||...... ... .+..  . ..     ..+.+..
T Consensus       160 ~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~-~~~-~~~~--~-~~-----~~~~~~~  229 (264)
T cd06626         160 VQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNE-FQI-MFHV--G-AG-----HKPPIPD  229 (264)
T ss_pred             ccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcch-HHH-HHHH--h-cC-----CCCCCCc
Confidence              134678899999988766   889999999999999999999998643211 111 1100  0 00     1111111


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .    .....++.+++.+|++.+|.+||++.|++.
T Consensus       230 ~----~~~~~~~~~li~~~l~~~p~~R~~~~~i~~  260 (264)
T cd06626         230 S----LQLSPEGKDFLDRCLESDPKKRPTASELLQ  260 (264)
T ss_pred             c----cccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            1    011224557778999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.97  E-value=4.8e-30  Score=277.70  Aligned_cols=240  Identities=20%  Similarity=0.341  Sum_probs=183.2

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ...+|.|++|.||+|....++..+|+|++.... ......+.+|+..+.+ ++||||+++++.+..++..++||||++++
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~iv~e~~~~~   84 (267)
T cd06610           6 IEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQ-CNHPNVVKYYTSFVVGDELWLVMPYLSGG   84 (267)
T ss_pred             eeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHh-cCCCCEEEEEEEEeeCCEEEEEEeccCCC
Confidence            345688999999999987888999999885432 2234567788877766 79999999999999999999999999999


Q ss_pred             CHHHHHHc------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          767 ELSEVLRN------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       767 ~L~~~l~~------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      +|.++++.      +++.....++.|++.|++|||   ..+++||||||+||+++++.  .+++.|+|.+....      
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh---~~~i~h~~l~p~ni~~~~~~--~~~l~df~~~~~~~~~~~~~  159 (267)
T cd06610          85 SLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLH---SNGQIHRDIKAGNILLGEDG--SVKIADFGVSASLADGGDRT  159 (267)
T ss_pred             cHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHhEEEcCCC--CEEEcccchHHHhccCcccc
Confidence            99999853      688899999999999999999   56899999999999999754  47888888764321      


Q ss_pred             ----CCCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccccc
Q 002105          835 ----SKSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                          ....++..|+|||++... .++.++|||||||++|||++|+.||..... .....+....     .     .+...
T Consensus       160 ~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~-~~~~~~~~~~-----~-----~~~~~  228 (267)
T cd06610         160 RKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPP-MKVLMLTLQN-----D-----PPSLE  228 (267)
T ss_pred             ccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccCh-hhhHHHHhcC-----C-----CCCcC
Confidence                122578899999998776 789999999999999999999999865322 1112121111     0     01110


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .... ......++.+++.+|++.||++||+++|+++
T Consensus       229 ~~~~-~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~  263 (267)
T cd06610         229 TGAD-YKKYSKSFRKMISLCLQKDPSKRPTAEELLK  263 (267)
T ss_pred             Cccc-cccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            0000 0011235667888999999999999999875

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.97  E-value=4.5e-30  Score=277.31  Aligned_cols=230  Identities=21%  Similarity=0.272  Sum_probs=178.7

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +|.|++|.||+++...++..+|+|.+.....   ...+.+..|+..+.+ ++||||+++++++.+++..++||||+++|+
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEE-CNHPFIVKLYRTFKDKKYIYMLMEYCLGGE   79 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHh-CCCCCEeeeeeeEEcCCccEEEEecCCCCc
Confidence            4788999999999988899999998864322   223456777776666 699999999999999999999999999999


Q ss_pred             HHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-----CCcC
Q 002105          768 LSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----KSIN  839 (966)
Q Consensus       768 L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-----~~~~  839 (966)
                      |.+++++   +++..+..++.|++.||+|||   +.+++|+||||+||+++.+.  .+++.|+|.+.....     ...+
T Consensus        80 L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~~~h~dl~~~nilv~~~~--~~~l~df~~~~~~~~~~~~~~~~~  154 (262)
T cd05572          80 LWTILRDRGLFDEYTARFYIACVVLAFEYLH---NRGIIYRDLKPENLLLDSNG--YVKLVDFGFAKKLKSGQKTWTFCG  154 (262)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCHHHEEEcCCC--CEEEeeCCcccccCcccccccccC
Confidence            9999863   788899999999999999999   56999999999999998754  478889988764322     2357


Q ss_pred             CcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHH
Q 002105          840 SSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEI  919 (966)
Q Consensus       840 ~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  919 (966)
                      ++.|+|||......++.++|+||||+++|||++|+.||........   +..........     .+......      .
T Consensus       155 ~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~------~  220 (262)
T cd05572         155 TPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPM---EIYNDILKGNG-----KLEFPNYI------D  220 (262)
T ss_pred             CcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHH---HHHHHHhccCC-----CCCCCccc------C
Confidence            8899999999888899999999999999999999999875432111   11111111000     00011111      2


Q ss_pred             HHHHHHHHHccCCCCCCCCCH
Q 002105          920 VEIMNLALHCTAGDPTARPCA  940 (966)
Q Consensus       920 ~~~~~l~~~C~~~~P~~RPt~  940 (966)
                      .++.+++.+||+.+|++||++
T Consensus       221 ~~~~~~i~~~l~~~p~~R~~~  241 (262)
T cd05572         221 KAAKDLIKQLLRRNPEERLGN  241 (262)
T ss_pred             HHHHHHHHHHccCChhhCcCC
Confidence            356778889999999999993

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.97  E-value=3e-30  Score=284.35  Aligned_cols=249  Identities=19%  Similarity=0.242  Sum_probs=180.9

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc-----cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-----TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-----~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ..+|+|++|.||+|....++..||||++......     ....+..|+..+.+ ++||||+++++++.+++..++||||+
T Consensus         6 ~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~-~~h~~i~~~~~~~~~~~~~~lv~e~~   84 (298)
T cd07841           6 KKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQE-LKHPNIIGLLDVFGHKSNINLVFEFM   84 (298)
T ss_pred             eeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhh-cCCCCChhhhheeecCCEEEEEEccc
Confidence            3468899999999998888999999998654322     12234567776666 79999999999999999999999999


Q ss_pred             CCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC----
Q 002105          764 EGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS----  835 (966)
Q Consensus       764 ~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~----  835 (966)
                       +|+|.++++    .++|..+..++.||++||+|||   ..+|+||||||+||+++.++  .++++|||.+.....    
T Consensus        85 -~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dl~p~nill~~~~--~~~l~dfg~~~~~~~~~~~  158 (298)
T cd07841          85 -ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLH---SNWILHRDLKPNNLLIASDG--VLKLADFGLARSFGSPNRK  158 (298)
T ss_pred             -CCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCChhhEEEcCCC--CEEEccceeeeeccCCCcc
Confidence             899999996    3789999999999999999999   55899999999999999754  478889988754321    


Q ss_pred             --CCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCc---------cccc
Q 002105          836 --KSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCH---------LDTW  903 (966)
Q Consensus       836 --~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~---------~~~~  903 (966)
                        ...+++.|+|||.+.+ ..++.++|||||||++|||++|.+||...... +......+. .....         ...+
T Consensus       159 ~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~  236 (298)
T cd07841         159 MTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDI-DQLGKIFEA-LGTPTEENWPGVTSLPDY  236 (298)
T ss_pred             ccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccH-HHHHHHHHH-cCCCchhhhhhccccccc
Confidence              1245678999998754 46789999999999999999998877654221 111111110 00000         0000


Q ss_pred             ccccccCCCc---chHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          904 VDPFIRGHVS---SIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       904 ~d~~~~~~~~---~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      .........+   .......++.+++.+|++.+|++|||++||++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~  282 (298)
T cd07841         237 VEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEH  282 (298)
T ss_pred             ccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence            0000000000   001122456788899999999999999999974

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.97  E-value=4.3e-30  Score=278.33  Aligned_cols=238  Identities=20%  Similarity=0.361  Sum_probs=182.6

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcc------cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI------TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~------~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .+|+|++|.||++....++..||+|++......      ..+.+..|+..+.+ ++|||||++++++.+++..++||||+
T Consensus         7 ~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~~v~e~~   85 (268)
T cd06630           7 QLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMAR-LNHPHIIRMLGATCEDSHFNLFVEWM   85 (268)
T ss_pred             eecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHH-cCCCceehhhceeccCCeEEEEEecc
Confidence            458899999999999889999999988643211      12457778887777 79999999999999999999999999


Q ss_pred             CCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          764 EGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       764 ~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      ++++|.++++.   +++.....++.|++.||+|||   ..+++||||||+||+++.+. ..++++|||.+....      
T Consensus        86 ~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~LH---~~~i~H~~i~~~nil~~~~~-~~~~l~dfg~~~~~~~~~~~~  161 (268)
T cd06630          86 AGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLH---ENQIIHRDVKGANLLIDSTG-QRLRIADFGAAARLAAKGTGA  161 (268)
T ss_pred             CCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCC-CEEEEcccccccccccccccC
Confidence            99999999863   788999999999999999999   55999999999999998543 357889998764321      


Q ss_pred             ----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                          ....++..|+|||+..+..++.++||||+|+++|||++|+.||........ . ..........     ..+... 
T Consensus       162 ~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~-~-~~~~~~~~~~-----~~~~~~-  233 (268)
T cd06630         162 GEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNH-L-ALIFKIASAT-----TAPSIP-  233 (268)
T ss_pred             CccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcch-H-HHHHHHhccC-----CCCCCc-
Confidence                123567899999999888899999999999999999999999864321111 1 1111100000     011111 


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                           .....++.+++.+|++.+|++||++.|+++
T Consensus       234 -----~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~  263 (268)
T cd06630         234 -----EHLSPGLRDVTLRCLELQPEDRPPSRELLK  263 (268)
T ss_pred             -----hhhCHHHHHHHHHHcCCCcccCcCHHHHhc
Confidence                 111235667888999999999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.97  E-value=5.1e-30  Score=283.68  Aligned_cols=237  Identities=20%  Similarity=0.305  Sum_probs=180.2

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc---cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI---TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~---~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ....+|.|++|.||+|+...++..||+|++......   ..+++.+|+..+.+ ++||||++++|+|..++..|+||||+
T Consensus        19 ~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~-l~h~niv~~~~~~~~~~~~~lv~e~~   97 (307)
T cd06607          19 DLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQ-LRHPNTIEYKGCYLREHTAWLVMEYC   97 (307)
T ss_pred             hheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHh-CCCCCEEEEEEEEEeCCeEEEEHHhh
Confidence            344578899999999998888999999988643222   22356778877777 79999999999999999999999999


Q ss_pred             CCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--CCC
Q 002105          764 EGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--SKS  837 (966)
Q Consensus       764 ~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--~~~  837 (966)
                      + |++.+++.    .++|..+..++.|++.||.|||   ..+|+||||||+||+++++.  .++++|||.+....  ...
T Consensus        98 ~-g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH---~~~i~H~dl~p~nIl~~~~~--~~kL~dfg~~~~~~~~~~~  171 (307)
T cd06607          98 L-GSASDILEVHKKPLQEVEIAAICHGALQGLAYLH---SHERIHRDIKAGNILLTEPG--TVKLADFGSASLVSPANSF  171 (307)
T ss_pred             C-CCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEECCCC--CEEEeecCcceecCCCCCc
Confidence            8 57766663    4899999999999999999999   55899999999999998764  47888998775432  234


Q ss_pred             cCCcccccccccC---CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          838 INSSAYVAPETKE---SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       838 ~~~~~y~aPE~~~---~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      .+++.|+|||++.   ...++.++|||||||++|||+||+.|+..... .... ...   ... .     .+....    
T Consensus       172 ~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~-~~~~-~~~---~~~-~-----~~~~~~----  236 (307)
T cd06607         172 VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA-MSAL-YHI---AQN-D-----SPTLSS----  236 (307)
T ss_pred             cCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccH-HHHH-HHH---hcC-C-----CCCCCc----
Confidence            5788999999874   45688999999999999999999999864311 1111 000   000 0     011100    


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                       .....++.+++.+||+.+|++||+|.+|+..
T Consensus       237 -~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  267 (307)
T cd06607         237 -NDWSDYFRNFVDSCLQKIPQDRPSSEELLKH  267 (307)
T ss_pred             -hhhCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence             1122356778889999999999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.97  E-value=5.7e-30  Score=280.32  Aligned_cols=235  Identities=20%  Similarity=0.348  Sum_probs=183.8

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCH
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL  768 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L  768 (966)
                      ..+|.|++|.||++....++..||+|++..... ..+.+..|+..+.+ ++||||+++++++..++..|+||||+++++|
T Consensus        25 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L  102 (286)
T cd06614          25 EKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKD-CKHPNIVDYYDSYLVGDELWVVMEYMDGGSL  102 (286)
T ss_pred             HhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHH-CCCCCeeEEEEEEEECCEEEEEEeccCCCcH
Confidence            456888999999999977899999999865433 44567788887777 7999999999999999999999999999999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CCCc
Q 002105          769 SEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SKSI  838 (966)
Q Consensus       769 ~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~~~  838 (966)
                      .++++    .+++..+..++.+++.||+|||   ..+++|+||||+||+++.+.  .+++.++|.+....      ....
T Consensus       103 ~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH---~~gi~H~dl~p~ni~i~~~~--~~~l~d~~~~~~~~~~~~~~~~~~  177 (286)
T cd06614         103 TDIITQNFVRMNEPQIAYVCREVLQGLEYLH---SQNVIHRDIKSDNILLSKDG--SVKLADFGFAAQLTKEKSKRNSVV  177 (286)
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCChhhEEEcCCC--CEEECccchhhhhccchhhhcccc
Confidence            99986    4789999999999999999999   56999999999999999654  46788888764322      1234


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      +++.|+|||+..+..++.++|||||||++|||+||+.|+..... ......+..    . ......++         ...
T Consensus       178 ~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~-~~~~~~~~~----~-~~~~~~~~---------~~~  242 (286)
T cd06614         178 GTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPP-LRALFLITT----K-GIPPLKNP---------EKW  242 (286)
T ss_pred             CCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHh----c-CCCCCcch---------hhC
Confidence            67889999999888899999999999999999999999864321 111111111    0 00000000         001


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ..++.+++.+|++.+|.+||++.+|++
T Consensus       243 ~~~l~~li~~~l~~~p~~Rpt~~~il~  269 (286)
T cd06614         243 SPEFKDFLNKCLVKDPEKRPSAEELLQ  269 (286)
T ss_pred             CHHHHHHHHHHhccChhhCcCHHHHhh
Confidence            234667788999999999999999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=5.4e-32  Score=317.21  Aligned_cols=235  Identities=24%  Similarity=0.339  Sum_probs=176.7

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ..+|+|-||.||-+....+|...|+|.+.-.... ..-.-+.|+-.+...+.|||+|++||+=.+.+..+|.||||++|+
T Consensus      1241 ~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEyC~~Gs 1320 (1509)
T KOG4645|consen 1241 NFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEYCEGGS 1320 (1509)
T ss_pred             cccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHHhccCc
Confidence            3458888999999999999999999988543222 122234444444444899999999999999999999999999999


Q ss_pred             HHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----------
Q 002105          768 LSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----------  834 (966)
Q Consensus       768 L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----------  834 (966)
                      |.+.++.   .++.....+..|++.|++|||.+   +||||||||+||+||.++  .+|++|||.+....          
T Consensus      1321 La~ll~~gri~dE~vt~vyt~qll~gla~LH~~---gIVHRDIK~aNI~Ld~~g--~iK~~DFGsa~ki~~~~~~~~~el 1395 (1509)
T KOG4645|consen 1321 LASLLEHGRIEDEMVTRVYTKQLLEGLAYLHEH---GIVHRDIKPANILLDFNG--LIKYGDFGSAVKIKNNAQTMPGEL 1395 (1509)
T ss_pred             HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhc---CceecCCCccceeeecCC--cEEeecccceeEecCchhcCCHHH
Confidence            9999863   56666677889999999999955   999999999999999665  78999999886421          


Q ss_pred             CCCcCCcccccccccCCC---CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhc-cCcccccccccccC
Q 002105          835 SKSINSSAYVAPETKESK---DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYS-DCHLDTWVDPFIRG  910 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~---~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~  910 (966)
                      ....||+.|||||++.+.   ....++||||+|||++||+||++|+..--.      +|+-+..- .++.     |.++.
T Consensus      1396 ~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dn------e~aIMy~V~~gh~-----Pq~P~ 1464 (1509)
T KOG4645|consen 1396 QSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDN------EWAIMYHVAAGHK-----PQIPE 1464 (1509)
T ss_pred             HhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccc------hhHHHhHHhccCC-----CCCch
Confidence            123799999999998754   345689999999999999999999853211      45543221 1221     11221


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ..      -.+-.+...+|++.||++|.++.|+++
T Consensus      1465 ~l------s~~g~dFle~Cl~~dP~~Rw~~~qlle 1493 (1509)
T KOG4645|consen 1465 RL------SSEGRDFLEHCLEQDPKMRWTASQLLE 1493 (1509)
T ss_pred             hh------hHhHHHHHHHHHhcCchhhhHHHHHHH
Confidence            11      123456677999999999988776554

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=4.4e-30  Score=279.23  Aligned_cols=238  Identities=18%  Similarity=0.293  Sum_probs=180.3

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCC------eeEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK------AAYLVY  760 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~------~~~lv~  760 (966)
                      ....+|.|++|.||+|....++..+|+|.+..... ..+.+..|+..+.++..||||+++++++....      ..++||
T Consensus        10 ~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~lv~   88 (275)
T cd06608          10 LVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLWLVM   88 (275)
T ss_pred             heeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceEEEEEE
Confidence            34557888999999999977888999998754332 34567888888888547999999999997644      489999


Q ss_pred             EccCCCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec
Q 002105          761 EYIEGKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT  833 (966)
Q Consensus       761 Ey~~~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~  833 (966)
                      ||+++++|.++++       .+++..+..++.|++.||+|||   +.+++||||+|+||+++++  ..+++.++|.+...
T Consensus        89 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH---~~~i~H~~l~p~ni~~~~~--~~~~l~d~~~~~~~  163 (275)
T cd06608          89 ELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLH---ENKVIHRDIKGQNILLTKN--AEVKLVDFGVSAQL  163 (275)
T ss_pred             EcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEEccC--CeEEECCCccceec
Confidence            9999999998874       3788899999999999999999   5689999999999999965  45788999876542


Q ss_pred             C------CCCcCCcccccccccCC-----CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccc
Q 002105          834 D------SKSINSSAYVAPETKES-----KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDT  902 (966)
Q Consensus       834 ~------~~~~~~~~y~aPE~~~~-----~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  902 (966)
                      .      ....++..|+|||++..     ..++.++|||||||++|||+||+.||.... ......+..    .. .   
T Consensus       164 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-~~~~~~~~~----~~-~---  234 (275)
T cd06608         164 DSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMH-PMRALFKIP----RN-P---  234 (275)
T ss_pred             ccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccc-hHHHHHHhh----cc-C---
Confidence            1      22357888999998753     346889999999999999999999986431 111111111    00 0   


Q ss_pred             cccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          903 WVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       903 ~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                        .+.+.    .......++.+++.+|++.||++|||+.||++
T Consensus       235 --~~~~~----~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         235 --PPTLK----SPENWSKKFNDFISECLIKNYEQRPFMEELLE  271 (275)
T ss_pred             --CCCCC----chhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence              01110    00112235667888999999999999999975

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.97  E-value=4.8e-30  Score=284.97  Aligned_cols=249  Identities=18%  Similarity=0.228  Sum_probs=175.5

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +.|-|+.+.||.++...++..||||++...  .....+.+..|+..+.+ ++||||+++++++..++..+++|||+++|+
T Consensus         7 ~~~~~~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~-l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~   85 (314)
T cd08216           7 GKCFEDLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQ-LQHPNILPYVTSFIVDSELYVVSPLMAYGS   85 (314)
T ss_pred             hHhhcCCceEEEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHh-cCCcchhhhhheeecCCeEEEEEeccCCCC
Confidence            334444445666666678999999998643  22233457788877777 699999999999999999999999999999


Q ss_pred             HHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--------
Q 002105          768 LSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--------  834 (966)
Q Consensus       768 L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--------  834 (966)
                      |.++++.     +++.....++.|+++||+|||   ..+|+||||||+||+++.+.  .+++.+++.+....        
T Consensus        86 l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH---~~~ivH~dlk~~Nili~~~~--~~kl~d~~~~~~~~~~~~~~~~  160 (314)
T cd08216          86 CEDLLKTHFPEGLPELAIAFILKDVLNALDYIH---SKGFIHRSVKASHILLSGDG--KVVLSGLRYSVSMIKHGKRQRV  160 (314)
T ss_pred             HHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCcceEEEecCC--ceEEecCccceeeccccccccc
Confidence            9999863     678888899999999999999   55899999999999999654  45677777653211        


Q ss_pred             -----CCCcCCcccccccccCC--CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhcc----------
Q 002105          835 -----SKSINSSAYVAPETKES--KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD----------  897 (966)
Q Consensus       835 -----~~~~~~~~y~aPE~~~~--~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~----------  897 (966)
                           ....++..|+|||++..  ..++.++|||||||++|||++|+.||...... ....+........          
T Consensus       161 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  239 (314)
T cd08216         161 VHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPAT-QMLLEKVRGTVPCLLDKSTYPLY  239 (314)
T ss_pred             cccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHhccCccccccCchhhh
Confidence                 12345678999999865  45889999999999999999999998753211 1111111110000          


Q ss_pred             -Cccc----ccccccccCCCc--chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          898 -CHLD----TWVDPFIRGHVS--SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       898 -~~~~----~~~d~~~~~~~~--~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       ....    ...++.......  .....-.++.+++.+||+.||++|||++|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~  294 (314)
T cd08216         240 EDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLN  294 (314)
T ss_pred             cCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhc
Confidence             0000    001111110000  00111235677889999999999999999985

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.97  E-value=4e-30  Score=281.06  Aligned_cols=246  Identities=22%  Similarity=0.294  Sum_probs=180.9

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ..+|.|++|.||+|+...+|..||+|++....  ....+.+..|+..+.+ ++||||+++++++.+++..|+||||++ +
T Consensus         5 ~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~-l~~~~iv~~~~~~~~~~~~~iv~e~~~-~   82 (283)
T cd07835           5 EKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKE-LNHPNIVRLLDVVHSENKLYLVFEFLD-L   82 (283)
T ss_pred             eEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHh-cCCCCccCHhheeccCCeEEEEEeccC-c
Confidence            45688899999999998899999999886432  2223457788888777 699999999999999999999999995 6


Q ss_pred             CHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------C
Q 002105          767 ELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------S  835 (966)
Q Consensus       767 ~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~  835 (966)
                      +|.+++.     .++|..+..++.|+++||+|||   ..+++||||+|+||+++.+.  .+++.|+|.+....      .
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH---~~~~~H~dl~p~nil~~~~~--~~~l~df~~~~~~~~~~~~~~  157 (283)
T cd07835          83 DLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCH---SHRVLHRDLKPQNLLIDREG--ALKLADFGLARAFGVPVRTYT  157 (283)
T ss_pred             CHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCC--cEEEeecccccccCCCccccC
Confidence            9999885     3789999999999999999999   55899999999999999744  57888988875422      1


Q ss_pred             CCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhcc---------------Cc
Q 002105          836 KSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD---------------CH  899 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~---------------~~  899 (966)
                      ...+++.|+|||++.+. .++.++|||||||++|||+||+.||..... .....+..+.....               ..
T Consensus       158 ~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (283)
T cd07835         158 HEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSE-IDQLFRIFRTLGTPDEDVWPGVTSLPDYKPT  236 (283)
T ss_pred             ccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCChHHhhhhhhchhhhhh
Confidence            22457889999987654 578999999999999999999999865421 11111111110000               00


Q ss_pred             ccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          900 LDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       900 ~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ...+..+......+   ....++.+++.+|++.+|++|||++||++
T Consensus       237 ~~~~~~~~~~~~~~---~~~~~~~~li~~~l~~~P~~Rpt~~~il~  279 (283)
T cd07835         237 FPKWARQDLSKVVP---NLDEDGLDLLSKMLVYDPAKRISAKAALQ  279 (283)
T ss_pred             cccccccchhhhcC---CCCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence            00000000000000   01135667889999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.97  E-value=1.4e-30  Score=285.60  Aligned_cols=242  Identities=18%  Similarity=0.280  Sum_probs=180.3

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ...+|+|++|.||+++...++..+|+|++.... ......+..|+..+.+...|||||+++|++..++..++||||++. 
T Consensus         9 ~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~~~-   87 (288)
T cd06616           9 LGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMELMDI-   87 (288)
T ss_pred             HHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEecccC-
Confidence            345789999999999998899999999886432 223445788888888854599999999999999999999999874 


Q ss_pred             CHHHH---H-----HcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          767 ELSEV---L-----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       767 ~L~~~---l-----~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      ++.++   +     ..+++....+++.+++.||+|||+.  .+++||||||+||+++.+.  .+++.|||++....    
T Consensus        88 ~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~--~~kl~dfg~~~~~~~~~~  163 (288)
T cd06616          88 SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEE--LKIIHRDVKPSNILLDRNG--NIKLCDFGISGQLVDSIA  163 (288)
T ss_pred             CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhc--CCeeccCCCHHHEEEccCC--cEEEeecchhHHhccCCc
Confidence            55443   2     1378889999999999999999952  4899999999999998653  57889999875321    


Q ss_pred             -CCCcCCcccccccccCCC---CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          835 -SKSINSSAYVAPETKESK---DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~---~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                       ....++..|+|||++.+.   .++.++|||||||++|||++|+.||....   . ..+........      ..|.+..
T Consensus       164 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~---~-~~~~~~~~~~~------~~~~~~~  233 (288)
T cd06616         164 KTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWN---S-VFDQLTQVVKG------DPPILSN  233 (288)
T ss_pred             cccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcc---h-HHHHHhhhcCC------CCCcCCC
Confidence             223578899999998766   68999999999999999999999986432   1 11111111110      0111111


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      ...  .....++.+++.+|++.+|++|||+.||++.
T Consensus       234 ~~~--~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~  267 (288)
T cd06616         234 SEE--REFSPSFVNFINLCLIKDESKRPKYKELLEH  267 (288)
T ss_pred             cCC--CccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            110  1122356778889999999999999999863

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.97  E-value=1.1e-29  Score=282.44  Aligned_cols=238  Identities=21%  Similarity=0.314  Sum_probs=181.3

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc---ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ...+|+|++|.||+++...++..||+|++.......   ...+..|+..+.+ ++|||+|+++++|.+++..++||||++
T Consensus        30 ~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~  108 (317)
T cd06635          30 LREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQR-IKHPNSIEYKGCYLREHTAWLVMEYCL  108 (317)
T ss_pred             hheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHh-CCCCCEEEEEEEEeeCCeEEEEEeCCC
Confidence            445788999999999988889999999886432221   2346778877777 699999999999999999999999997


Q ss_pred             CCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--CCCc
Q 002105          765 GKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--SKSI  838 (966)
Q Consensus       765 ~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--~~~~  838 (966)
                       |++.+.+.    .++|.++..++.+++.|+.|||   ..+|+||||||+||+++.+  ..++++|+|.+....  ....
T Consensus       109 -g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH---~~~i~H~dL~p~Nil~~~~--~~~kl~dfg~~~~~~~~~~~~  182 (317)
T cd06635         109 -GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLH---SHNMIHRDIKAGNILLTEP--GQVKLADFGSASIASPANSFV  182 (317)
T ss_pred             -CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcccEEECCC--CCEEEecCCCccccCCccccc
Confidence             57777764    3889999999999999999999   5589999999999999865  457889998765432  2346


Q ss_pred             CCcccccccccC---CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          839 NSSAYVAPETKE---SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       839 ~~~~y~aPE~~~---~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      +++.|+|||++.   .+.++.++|||||||++|||++|+.||.... .......+..    ...      +....     
T Consensus       183 ~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~-~~~~~~~~~~----~~~------~~~~~-----  246 (317)
T cd06635         183 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN-AMSALYHIAQ----NES------PTLQS-----  246 (317)
T ss_pred             CCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCcc-HHHHHHHHHh----ccC------CCCCC-----
Confidence            788999999873   4568899999999999999999999986431 1111111111    100      00000     


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                      ......+.+++.+|++.+|.+||++.||++...
T Consensus       247 ~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~  279 (317)
T cd06635         247 NEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMF  279 (317)
T ss_pred             ccccHHHHHHHHHHccCCcccCcCHHHHHhChh
Confidence            111234667888999999999999999987554

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=3.6e-30  Score=286.26  Aligned_cols=234  Identities=22%  Similarity=0.300  Sum_probs=178.4

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc---cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI---TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~---~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ...+|.|++|.||+++...++..+|+|.+......   ..+.+..|+..+.+ ++||||+++++++..++..|+||||++
T Consensus         6 ~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~lv~e~~~   84 (316)
T cd05574           6 IKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILAT-LDHPFLPTLYASFQTETYLCLVMDYCP   84 (316)
T ss_pred             eeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHh-CCCCCchhheeeeecCCEEEEEEEecC
Confidence            34578899999999999888999999998654322   22346667776666 799999999999999999999999999


Q ss_pred             CCCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC----
Q 002105          765 GKELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS----  835 (966)
Q Consensus       765 ~g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~----  835 (966)
                      +|+|.++++     .+++.....++.|+++||+|||   ..+++||||||+||+++.+.  .+++.|+|.+.....    
T Consensus        85 ~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~--~~~l~dfg~~~~~~~~~~~  159 (316)
T cd05574          85 GGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLH---LLGIVYRDLKPENILLHESG--HIMLSDFDLSKQSDVEPPP  159 (316)
T ss_pred             CCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChHHeEEcCCC--CEEEeecchhhcccccccc
Confidence            999999985     3788999999999999999999   56899999999999999754  467888887543211    


Q ss_pred             -------------------------------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCch
Q 002105          836 -------------------------------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVH  884 (966)
Q Consensus       836 -------------------------------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~  884 (966)
                                                     ...|+..|+|||+..+..++.++|||||||++|||++|+.||...... 
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~-  238 (316)
T cd05574         160 VSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRD-  238 (316)
T ss_pred             cccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchH-
Confidence                                           124678899999999988999999999999999999999998653211 


Q ss_pred             hhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 002105          885 ESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV  943 (966)
Q Consensus       885 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v  943 (966)
                      ..   +... .. ...      .....    .....++.+++.+|++.+|++|||++..
T Consensus       239 ~~---~~~~-~~-~~~------~~~~~----~~~~~~~~~li~~~l~~~p~~R~s~~~~  282 (316)
T cd05574         239 ET---FSNI-LK-KEV------TFPGS----PPVSSSARDLIRKLLVKDPSKRLGSKRG  282 (316)
T ss_pred             HH---HHHH-hc-CCc------cCCCc----cccCHHHHHHHHHHccCCHhHCCCchhh
Confidence            11   1111 00 000      00000    0112356778889999999999994333

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.97  E-value=7.3e-30  Score=277.39  Aligned_cols=237  Identities=18%  Similarity=0.291  Sum_probs=179.1

Q ss_pred             cCCCCCccEEEEEEEec---CCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCC------eeEE
Q 002105          690 SRGKKGVSSSYKVRSLA---NDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK------AAYL  758 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~---~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~------~~~l  758 (966)
                      .+|+||+|.||+|....   ++..||+|.+....  ....+++.+|+..+.+ ++||||+++++++...+      ..++
T Consensus         6 ~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~~~~~~~~   84 (273)
T cd05074           6 MLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKE-FDHPNVIKLIGVSLRSRAKGRLPIPMV   84 (273)
T ss_pred             cccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhc-CCCCCcceEEEEEccCCCCCcccceEE
Confidence            46888999999998643   46789999885432  2223457788877777 69999999999886532      3478


Q ss_pred             EEEccCCCCHHHHHH---------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccc
Q 002105          759 VYEYIEGKELSEVLR---------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL  829 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~---------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~  829 (966)
                      ++||+++|+|.+++.         .+++....+++.|++.|++|||   +.+|+||||||+||+++++.  .+++.|||.
T Consensus        85 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~nili~~~~--~~kl~dfg~  159 (273)
T cd05074          85 ILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLS---SKNFIHRDLAARNCMLNENM--TVCVADFGL  159 (273)
T ss_pred             EEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccchhhEEEcCCC--CEEECcccc
Confidence            999999999998873         3688889999999999999999   55899999999999998654  468899998


Q ss_pred             ceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcc
Q 002105          830 AYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHL  900 (966)
Q Consensus       830 ~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  900 (966)
                      +....        ....+++.|++||......++.++|||||||++|||++ |+.|+....  ......+..   .....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~--~~~~~~~~~---~~~~~  234 (273)
T cd05074         160 SKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVE--NSEIYNYLI---KGNRL  234 (273)
T ss_pred             cccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCC--HHHHHHHHH---cCCcC
Confidence            75421        12234568999999988889999999999999999999 888876432  111112211   11000


Q ss_pred             cccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          901 DTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       901 ~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                            ....      ....++.+++.+|++.+|++||++.||.+.|++
T Consensus       235 ------~~~~------~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~  271 (273)
T cd05074         235 ------KQPP------DCLEDVYELMCQCWSPEPKCRPSFQHLRDQLEL  271 (273)
T ss_pred             ------CCCC------CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHh
Confidence                  0000      112367788899999999999999999999987

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.97  E-value=1.2e-30  Score=281.94  Aligned_cols=237  Identities=22%  Similarity=0.341  Sum_probs=182.9

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +|+|++|.||+++...+|..+|+|.+.....   ...+.+..|+..+.+ ++||||+++++++..++..|+||||+++|+
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~-~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQ-AQSPYVVKLYYSFQGKKNLYLVMEYLPGGD   79 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHh-CCCcchhHHHHheecCcEEEEEEecCCCCc
Confidence            4788999999999977899999998854322   223346667766666 699999999999999999999999999999


Q ss_pred             HHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----------
Q 002105          768 LSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----------  834 (966)
Q Consensus       768 L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----------  834 (966)
                      |.++++.   +++..+..++.|+++||+|||   ..+++||||+|+||+++.+.  .++++|||++....          
T Consensus        80 L~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~di~~~nil~~~~~--~~~l~dfg~~~~~~~~~~~~~~~~  154 (265)
T cd05579          80 LASLLENVGSLDEDVARIYIAEIVLALEYLH---SNGIIHRDLKPDNILIDSNG--HLKLTDFGLSKVGLVRRQINLNDD  154 (265)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HcCeecCCCCHHHeEEcCCC--CEEEEecccchhcccCcccccccc
Confidence            9999864   789999999999999999999   56899999999999999765  46788888765321          


Q ss_pred             ----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                          ....++..|+|||......++.++||||||+++||++||+.||....  .+.   ........ ..    ++  ..
T Consensus       155 ~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~--~~~---~~~~~~~~-~~----~~--~~  222 (265)
T cd05579         155 EKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGET--PEE---IFQNILNG-KI----EW--PE  222 (265)
T ss_pred             cccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC--HHH---HHHHHhcC-Cc----CC--Cc
Confidence                12346778999999988889999999999999999999999986432  111   11111110 00    00  00


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      ..    ....++.+++.+|++.+|++|||+.+|.+.|+.
T Consensus       223 ~~----~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~~  257 (265)
T cd05579         223 DV----EVSDEAIDLISKLLVPDPEKRLGAKSIEEIKNH  257 (265)
T ss_pred             cc----cCCHHHHHHHHHHhcCCHhhcCCCccHHHHhcC
Confidence            00    012356678889999999999999888777765

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.97  E-value=8e-30  Score=277.79  Aligned_cols=232  Identities=21%  Similarity=0.225  Sum_probs=176.3

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +|+|++|.||++....+|..||+|.+....   ....+.+..|+..+.+ ++||||+++++++...+..|+||||+++|+
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEK-VSSRFIVSLAYAFETKDDLCLVMTLMNGGD   79 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHh-CCCCCEeeeeeEEecCCeEEEEEecCCCCc
Confidence            478999999999988899999999886432   1123345677777766 699999999999999999999999999999


Q ss_pred             HHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----CCC
Q 002105          768 LSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SKS  837 (966)
Q Consensus       768 L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----~~~  837 (966)
                      |.+++.     .+++..+..++.|++.|+.|||   ..+++||||||+||+++.+.  .++++|||.+....     ...
T Consensus        80 L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~~~i~H~di~p~Nil~~~~~--~~~l~dfg~~~~~~~~~~~~~~  154 (277)
T cd05577          80 LKYHIYNVGEPGFPEARAIFYAAQIICGLEHLH---QRRIVYRDLKPENVLLDDHG--NVRISDLGLAVELKGGKKIKGR  154 (277)
T ss_pred             HHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCC--CEEEccCcchhhhccCCccccc
Confidence            999885     3788999999999999999999   56899999999999998654  57889998765321     123


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      .++..|+|||+..+..++.++|||||||++|||++|+.||........ ..+.......       .........     
T Consensus       155 ~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~-----  221 (277)
T cd05577         155 AGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVE-KEELKRRTLE-------MAVEYPDKF-----  221 (277)
T ss_pred             cCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCccccc-HHHHHhcccc-------ccccCCccC-----
Confidence            467789999999888899999999999999999999999865322110 0011110000       000011111     


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASD  942 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~  942 (966)
                       ..++.+++.+|++.+|++||+.+|
T Consensus       222 -~~~~~~li~~~l~~~p~~R~~~~~  245 (277)
T cd05577         222 -SPEAKDLCEALLQKDPEKRLGCRG  245 (277)
T ss_pred             -CHHHHHHHHHHccCChhHccCCCc
Confidence             124567788999999999995444

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.97  E-value=5.2e-30  Score=280.90  Aligned_cols=248  Identities=20%  Similarity=0.316  Sum_probs=183.1

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ...+|.|++|.||+|....++..||+|++....  ....+.+..|+..+.+ ++||||+++++++..++..++||||+++
T Consensus         6 ~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~iv~e~~~~   84 (288)
T cd07833           6 LGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQ-LRHENIVNLKEAFRRKGRLYLVFEYVER   84 (288)
T ss_pred             EEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHh-cCCCCeeehhheEEECCEEEEEEecCCC
Confidence            445688999999999998889999999875432  2223457788877777 6999999999999999999999999999


Q ss_pred             CCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-------
Q 002105          766 KELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-------  835 (966)
Q Consensus       766 g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-------  835 (966)
                      +.+..+.+.   +++.....++.+|+.|++|||   ..+++||||||+||+++++.  .++++|+|.+.....       
T Consensus        85 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~~~ni~~~~~~--~~kl~d~g~~~~~~~~~~~~~~  159 (288)
T cd07833          85 TLLELLEASPGGLPPDAVRSYIWQLLQAIAYCH---SHNIIHRDIKPENILVSESG--VLKLCDFGFARALRARPASPLT  159 (288)
T ss_pred             CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCC--CEEEEeeecccccCCCcccccc
Confidence            888776653   789999999999999999999   55899999999999999754  578889988654221       


Q ss_pred             CCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhc------------cCccc-
Q 002105          836 KSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYS------------DCHLD-  901 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~------------~~~~~-  901 (966)
                      ...++..|+|||++.+. .++.++||||||+++|||++|+.||..... .+.+.. ......            +.... 
T Consensus       160 ~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  237 (288)
T cd07833         160 DYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSD-IDQLYL-IQKCLGPLPPSHQELFSSNPRFAG  237 (288)
T ss_pred             CcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHH-HHHHhCCCCHHHhhhcccCccccc
Confidence            23467789999999887 889999999999999999999999875422 111111 110000            00000 


Q ss_pred             -cccccccc----CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          902 -TWVDPFIR----GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       902 -~~~d~~~~----~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       ...++...    ..++  .....++.+++.+||+.+|++||++++|++
T Consensus       238 ~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~l~~~p~~Rps~~~il~  284 (288)
T cd07833         238 VAFPEPSQPESLERRYP--GKVSSPALDFLKACLRMDPKERLTCDELLQ  284 (288)
T ss_pred             cccCCCCCcHHHHHhcC--CccchHHHHHHHHHhccCchhcccHHHHhc
Confidence             00000000    0000  011346778899999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-30  Score=290.81  Aligned_cols=190  Identities=25%  Similarity=0.376  Sum_probs=158.9

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccc-hHHHHHHHHhhcCCCceeEEeeEEecCC------eeEEEEE
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSS-FWPDVSQFGKLIMHPNIVRLHGVCRSEK------AAYLVYE  761 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~-~~~e~~~~~~~~~H~niv~l~g~~~~~~------~~~lv~E  761 (966)
                      ...|+||||.||+++...+|..||||...........+ ..+|++.+.| ++|||||+++|+=.+..      ...+|||
T Consensus        19 e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkK-Lnh~NIVk~f~iee~~~~~~~~~~~vlvmE   97 (732)
T KOG4250|consen   19 ERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKK-LNHPNIVKLFDIEETKFLGLVTRLPVLVME   97 (732)
T ss_pred             hhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHH-cCchhhhhhcccCCccccCcccccceEEEe
Confidence            34699999999999999999999999886644333333 4566666666 79999999999765433      5689999


Q ss_pred             ccCCCCHHHHHH------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC--CCceEEEeccccceec
Q 002105          762 YIEGKELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK--DEPHLRLSVPGLAYCT  833 (966)
Q Consensus       762 y~~~g~L~~~l~------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~--~~~~~~~~~~~~~~~~  833 (966)
                      ||.||||+.+|+      .|+..+.+.+..+++.||.|||   ..+|+||||||.||++-..  +....|+.|||.++..
T Consensus        98 yC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~Lr---En~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel  174 (732)
T KOG4250|consen   98 YCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLR---ENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAAREL  174 (732)
T ss_pred             ecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHH---HcCceeccCCCCcEEEeecCCCceEEeeecccccccC
Confidence            999999999996      3899999999999999999999   4599999999999998532  3444579999999875


Q ss_pred             CC-----CCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCC
Q 002105          834 DS-----KSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFG  882 (966)
Q Consensus       834 ~~-----~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~  882 (966)
                      +.     ..+||+.|.|||.+.. +.|+..+|.|||||++||.+||..||....+
T Consensus       175 ~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~  229 (732)
T KOG4250|consen  175 DDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFGG  229 (732)
T ss_pred             CCCCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCCC
Confidence            43     3579999999999985 8899999999999999999999999976433

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=6.6e-30  Score=268.04  Aligned_cols=236  Identities=20%  Similarity=0.272  Sum_probs=176.6

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccc---hHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSS---FWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~---~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .+...|.|-.|.||.++...++..+|+|.+.+..-...+.   ...|-+.+.. +.||-+++||+.+++++..++|||||
T Consensus        81 llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~-lDHPFlPTLYa~fet~~~~cl~meyC  159 (459)
T KOG0610|consen   81 LLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSL-LDHPFLPTLYASFETDKYSCLVMEYC  159 (459)
T ss_pred             HHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHh-cCCCccchhhheeeccceeEEEEecC
Confidence            4456799999999999998888999999986543332222   2334344444 79999999999999999999999999


Q ss_pred             CCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee------
Q 002105          764 EGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------  832 (966)
Q Consensus       764 ~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~------  832 (966)
                      +||+|....++     ++....+-+|..|.-||+|||   ..|||.|||||+|||+-++  .+|.++||++...      
T Consensus       160 pGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLH---mlGivYRDLKPENILvred--GHIMLsDFDLS~~~~~~Pt  234 (459)
T KOG0610|consen  160 PGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLH---MLGIVYRDLKPENILVRED--GHIMLSDFDLSLRCPVSPT  234 (459)
T ss_pred             CCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHH---hhceeeccCCcceeEEecC--CcEEeeeccccccCCCCCe
Confidence            99999998863     788888899999999999999   6699999999999999754  4566666655311      


Q ss_pred             --------------------------------c------------------------CCCCcCCcccccccccCCCCCCC
Q 002105          833 --------------------------------T------------------------DSKSINSSAYVAPETKESKDITE  856 (966)
Q Consensus       833 --------------------------------~------------------------~~~~~~~~~y~aPE~~~~~~~~~  856 (966)
                                                      .                        ....+||-.|+|||++.+..++.
T Consensus       235 ~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgs  314 (459)
T KOG0610|consen  235 LVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGS  314 (459)
T ss_pred             eeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCCc
Confidence                                            0                        00125677899999999999999


Q ss_pred             cchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCC
Q 002105          857 KGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTA  936 (966)
Q Consensus       857 ~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~  936 (966)
                      ++|-|+|||++|||+.|+.||.+.... +.....+.           -++...+..    .....+.+++.+-+.+||.+
T Consensus       315 AVDWWtfGIflYEmLyG~TPFKG~~~~-~Tl~NIv~-----------~~l~Fp~~~----~vs~~akDLIr~LLvKdP~k  378 (459)
T KOG0610|consen  315 AVDWWTFGIFLYEMLYGTTPFKGSNNK-ETLRNIVG-----------QPLKFPEEP----EVSSAAKDLIRKLLVKDPSK  378 (459)
T ss_pred             hhhHHHHHHHHHHHHhCCCCcCCCCch-hhHHHHhc-----------CCCcCCCCC----cchhHHHHHHHHHhccChhh
Confidence            999999999999999999999875322 11111111           111111111    12234556777888999999


Q ss_pred             CCC----HHHHH
Q 002105          937 RPC----ASDVT  944 (966)
Q Consensus       937 RPt----~~~v~  944 (966)
                      |-.    +.||-
T Consensus       379 Rlg~~rGA~eIK  390 (459)
T KOG0610|consen  379 RLGSKRGAAEIK  390 (459)
T ss_pred             hhccccchHHhh
Confidence            987    66653

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.97  E-value=1.2e-29  Score=278.84  Aligned_cols=250  Identities=18%  Similarity=0.255  Sum_probs=179.6

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc--cccchHHHHHHHHhhcCCCceeEEeeEEecC--CeeEEEEEc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--KAAYLVYEY  762 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--~~~~lv~Ey  762 (966)
                      ....+|.|++|.||+|....++..+|+|++......  ....+.+|+..+.+ ++||||+++++++..+  +..|+||||
T Consensus         9 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~-l~h~ni~~~~~~~~~~~~~~~~lv~e~   87 (293)
T cd07843           9 KLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLK-LQHPNIVTVKEVVVGSNLDKIYMVMEY   87 (293)
T ss_pred             hhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHh-cCCCCEEEEEEEEEecCCCcEEEEehh
Confidence            345568899999999999888999999998643221  12245678887777 6999999999999877  889999999


Q ss_pred             cCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC---
Q 002105          763 IEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS---  835 (966)
Q Consensus       763 ~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~---  835 (966)
                      ++ ++|.+++..    +++.....++.||+.||+|||   ..+++||||||+||+++.+.  .++++|+|.+.....   
T Consensus        88 ~~-~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i~H~dl~p~nili~~~~--~~~l~d~g~~~~~~~~~~  161 (293)
T cd07843          88 VE-HDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLH---DNWILHRDLKTSNLLLNNRG--ILKICDFGLAREYGSPLK  161 (293)
T ss_pred             cC-cCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCC--cEEEeecCceeeccCCcc
Confidence            98 599888752    789999999999999999999   55899999999999999754  468889987764322   


Q ss_pred             ---CCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHh----------hcc----
Q 002105          836 ---KSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYC----------YSD----  897 (966)
Q Consensus       836 ---~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~----------~~~----  897 (966)
                         ...+++.|+|||++.+. .++.++|||||||++|||++|+.||..... .+.........          +..    
T Consensus       162 ~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (293)
T cd07843         162 PYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSE-IDQLNKIFKLLGTPTEKIWPGFSELPGA  240 (293)
T ss_pred             ccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCCh-HHHHHHHHHHhCCCchHHHHHhhccchh
Confidence               23467889999988654 468899999999999999999999875422 11110100000          000    


Q ss_pred             --CcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          898 --CHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       898 --~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                        ..........+....+.. .....+.+++..|++.+|++|||+.|++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~l~~~p~~R~t~~ell~  289 (293)
T cd07843         241 KKKTFTKYPYNQLRKKFPAL-SLSDNGFDLLNRLLTYDPAKRISAEDALK  289 (293)
T ss_pred             cccccccccchhhhcccccc-CCChHHHHHHHHHhccCccccCCHHHHhc
Confidence              000000000000111100 01234567888999999999999999875

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.97  E-value=1.2e-29  Score=277.36  Aligned_cols=250  Identities=21%  Similarity=0.302  Sum_probs=180.8

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ....+|.|++|.||+|+...+|..||||++...... ..+.+..|+..+.+ ++||||+++++++.+.+..++||||+++
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~   82 (284)
T cd07836           4 QLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKE-LKHENIVRLHDVIHTENKLMLVFEYMDK   82 (284)
T ss_pred             EeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHh-hcCCCEeeeeeeEeeCCcEEEEEecCCc
Confidence            345678899999999999888999999988654322 23456677777766 6999999999999999999999999994


Q ss_pred             CCHHHHHH------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          766 KELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       766 g~L~~~l~------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                       +|.+++.      .++|..+.+++.|++.||+|||   ..+++||||||+||+++++.  .+++.++|.+....     
T Consensus        83 -~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~h~dl~p~ni~~~~~~--~~~l~d~g~~~~~~~~~~~  156 (284)
T cd07836          83 -DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCH---ENRVLHRDLKPQNLLINKRG--ELKLADFGLARAFGIPVNT  156 (284)
T ss_pred             -cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEECCCC--cEEEeecchhhhhcCCccc
Confidence             8888875      2789999999999999999999   55899999999999999654  46888888775321     


Q ss_pred             -CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhc--cC------cccccc
Q 002105          835 -SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYS--DC------HLDTWV  904 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~  904 (966)
                       ....++..|+|||+..+ ..++.++|||||||++|||+||+.||.+... .+...+.......  ..      ....+.
T Consensus       157 ~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (284)
T cd07836         157 FSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNN-EDQLLKIFRIMGTPTESTWPGISQLPEYK  235 (284)
T ss_pred             cccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCc-HHHHHHHHHHhCCCChhhHHHHhcCchhc
Confidence             22346788999998765 4568899999999999999999999875422 1111111110000  00      000000


Q ss_pred             cccccCCCcch-----HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          905 DPFIRGHVSSI-----QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       905 d~~~~~~~~~~-----~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .. ........     .....++.+++.+|++.||.+||+++||++
T Consensus       236 ~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  280 (284)
T cd07836         236 PT-FPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQ  280 (284)
T ss_pred             cc-ccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            00 00000000     011235667888999999999999999874

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.97  E-value=9.2e-30  Score=285.55  Aligned_cols=249  Identities=24%  Similarity=0.349  Sum_probs=178.6

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEecc--CcccccchHHHHHHHHhhc-CCCceeEEeeEEecC--CeeEEEEEcc
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLI-MHPNIVRLHGVCRSE--KAAYLVYEYI  763 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~-~H~niv~l~g~~~~~--~~~~lv~Ey~  763 (966)
                      ..+|.|++|.||+|....++..+|+|++...  .......+..|+..+.+ + +||||++++|+|...  ...|+||||+
T Consensus        13 ~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~-l~~h~ni~~~~~~~~~~~~~~~~lv~e~~   91 (337)
T cd07852          13 QKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQE-LGDHPNIVKLLNVIKAENDKDIYLVFEYM   91 (337)
T ss_pred             HhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHH-hcCCCCccceeeeeccCCCceEEEEeccc
Confidence            3468889999999998778999999998542  22233456778887777 6 999999999998754  3689999999


Q ss_pred             CCCCHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-------
Q 002105          764 EGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------  834 (966)
Q Consensus       764 ~~g~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-------  834 (966)
                      + ++|.++++.  ++|..+..++.||+.||+|||   ..+|+||||||+||+++.+.  .++++|+|.+....       
T Consensus        92 ~-~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~i~H~dl~p~nill~~~~--~~kl~d~g~~~~~~~~~~~~~  165 (337)
T cd07852          92 E-TDLHAVIRANILEDVHKRYIMYQLLKALKYIH---SGNVIHRDLKPSNILLNSDC--RVKLADFGLARSLSELEENPE  165 (337)
T ss_pred             c-cCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCC--cEEEeeccchhcccccccccc
Confidence            8 599998874  789999999999999999999   56999999999999999764  56888998775321       


Q ss_pred             ----CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhcc-----------C
Q 002105          835 ----SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD-----------C  898 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-----------~  898 (966)
                          ....++..|+|||++.+ ..++.++|||||||++|||+||+.||...... +.. +........           .
T Consensus       166 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~  243 (337)
T cd07852         166 NPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTL-NQL-EKIIEVIGPPSAEDIESIKSP  243 (337)
T ss_pred             CcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChH-HHH-HHHHHHhCCCCHHHHHHHHhh
Confidence                12346788999998754 55788999999999999999999998653221 111 000000000           0


Q ss_pred             cccccccccccCCCcch----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          899 HLDTWVDPFIRGHVSSI----QNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       899 ~~~~~~d~~~~~~~~~~----~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      ......+..........    .....++.+++.+|++.+|++|||+.++++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~  295 (337)
T cd07852         244 FAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEH  295 (337)
T ss_pred             hHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhC
Confidence            00000000000000000    0012456788899999999999999999864

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.97  E-value=1.3e-29  Score=278.20  Aligned_cols=233  Identities=22%  Similarity=0.298  Sum_probs=180.7

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ...+|+|++|.||+++...+++.||+|.+.....   .....+.+|+..+.+ ++||||+++++++..++..|+||||++
T Consensus         6 ~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~~v~e~~~   84 (290)
T cd05580           6 IKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQS-IRHPFLVNLYGSFQDDSNLYLVMEYVP   84 (290)
T ss_pred             EEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHh-CCCCCccceeeEEEcCCeEEEEEecCC
Confidence            3456889999999999988899999998864321   123346677777777 689999999999999999999999999


Q ss_pred             CCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---CCCc
Q 002105          765 GKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---SKSI  838 (966)
Q Consensus       765 ~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---~~~~  838 (966)
                      +|+|.++++   .+++..+..++.|++.||+|||   ..+|+||||||+||+++.+.  .+++.+||++....   ....
T Consensus        85 ~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH---~~~i~H~dl~p~nili~~~~--~~kl~dfg~~~~~~~~~~~~~  159 (290)
T cd05580          85 GGELFSHLRKSGRFPEPVARFYAAQVVLALEYLH---SLDIVYRDLKPENLLLDSDG--YIKITDFGFAKRVKGRTYTLC  159 (290)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCC--CEEEeeCCCccccCCCCCCCC
Confidence            999999985   3889999999999999999999   56999999999999998764  47888998875432   2345


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      +++.|+|||...+..++.++||||||+++|||+||+.||....  .....+..   .. .      .+.+....      
T Consensus       160 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~~~---~~-~------~~~~~~~~------  221 (290)
T cd05580         160 GTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDN--PIQIYEKI---LE-G------KVRFPSFF------  221 (290)
T ss_pred             CCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHH---hc-C------CccCCccC------
Confidence            7889999999988888999999999999999999999986532  11111111   11 1      11111111      


Q ss_pred             HHHHHHHHHHccCCCCCCCC-----CHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARP-----CASDVT  944 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RP-----t~~~v~  944 (966)
                      ...+.+++.+||+.+|.+||     +++|++
T Consensus       222 ~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~  252 (290)
T cd05580         222 SPDAKDLIRNLLQVDLTKRLGNLKNGVNDIK  252 (290)
T ss_pred             CHHHHHHHHHHccCCHHHccCcccCCHHHHH
Confidence            12455677899999999999     555554

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.9e-30  Score=267.91  Aligned_cols=186  Identities=24%  Similarity=0.428  Sum_probs=158.4

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEec--cCcccccchHHHHHHHHhhcCCCceeEEeeEEec-----CCeeEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIID--VNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS-----EKAAYLVY  760 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~--~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~-----~~~~~lv~  760 (966)
                      +..+|+|.+|.|.++....+|..|||||+.+  ......+.-.+|++.+.. ++|+|||.+++.+..     -+.+|+|+
T Consensus        27 ~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~-~~HeNIi~l~di~~p~~~~~f~DvYiV~  105 (359)
T KOG0660|consen   27 IEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRH-LRHENIIGLLDIFRPPSRDKFNDVYLVF  105 (359)
T ss_pred             cccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHH-hcCCCcceEEeecccccccccceeEEeh
Confidence            4567999999999999999999999999973  344455566888888877 699999999999865     35789999


Q ss_pred             EccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---
Q 002105          761 EYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       761 Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---  834 (966)
                      |+|+ -||.+.++.   ++.....-+..|+.+||.|+|   +.+|+|||+||+|++++.+.  .+|++|||++...+   
T Consensus       106 elMe-tDL~~iik~~~~L~d~H~q~f~YQiLrgLKyiH---SAnViHRDLKPsNll~n~~c--~lKI~DFGLAR~~~~~~  179 (359)
T KOG0660|consen  106 ELME-TDLHQIIKSQQDLTDDHAQYFLYQILRGLKYIH---SANVIHRDLKPSNLLLNADC--DLKICDFGLARYLDKFF  179 (359)
T ss_pred             hHHh-hHHHHHHHcCccccHHHHHHHHHHHHHhcchhh---cccccccccchhheeeccCC--CEEeccccceeeccccC
Confidence            9995 699999973   778888888999999999999   67999999999999999764  46999999998763   


Q ss_pred             -----CCCcCCcccccccccC-CCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          835 -----SKSINSSAYVAPETKE-SKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       835 -----~~~~~~~~y~aPE~~~-~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                           +..+.|..|.|||... ...||.+.||||.|||+.||++|++-|.+.
T Consensus       180 ~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~  231 (359)
T KOG0660|consen  180 EDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGK  231 (359)
T ss_pred             cccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCC
Confidence                 3345688999999865 567999999999999999999999988764

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.97  E-value=1.6e-29  Score=278.06  Aligned_cols=247  Identities=22%  Similarity=0.299  Sum_probs=178.6

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ...+|+|++|.||+|+...++..||+|++.....  ...+.+..|+..+.+ ++||||+++++++..++..|+||||++ 
T Consensus         7 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~-   84 (294)
T PLN00009          7 VEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKE-MQHGNIVRLQDVVHSEKRLYLVFEYLD-   84 (294)
T ss_pred             EEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHh-ccCCCEeeEEEEEecCCeEEEEEeccc-
Confidence            3456889999999999988899999998754322  223457788887777 699999999999999999999999997 


Q ss_pred             CCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          766 KELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       766 g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      ++|.+++..     .++.....++.||+.||+|||   ..+++||||||+||+++.+. ..++++|||.+....      
T Consensus        85 ~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~i~H~dl~p~nill~~~~-~~~kl~dfg~~~~~~~~~~~~  160 (294)
T PLN00009         85 LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCH---SHRVLHRDLKPQNLLIDRRT-NALKLADFGLARAFGIPVRTF  160 (294)
T ss_pred             ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCcceEEEECCC-CEEEEcccccccccCCCcccc
Confidence            588877742     467777889999999999999   55899999999999998533 357899999875321      


Q ss_pred             CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccc------------
Q 002105          835 SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLD------------  901 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~------------  901 (966)
                      ....+++.|+|||++.+ ..++.++|||||||++|||+||+.||..... .+.+.+... ........            
T Consensus       161 ~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  238 (294)
T PLN00009        161 THEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSE-IDELFKIFR-ILGTPNEETWPGVTSLPDYK  238 (294)
T ss_pred             ccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHH-HhCCCChhhccccccchhhh
Confidence            22345788999998765 4578999999999999999999999865321 111111110 00000000            


Q ss_pred             ----ccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          902 ----TWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       902 ----~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                          .+.........+.   ...++.+++.+|++.+|++||++.++++
T Consensus       239 ~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~l~~~P~~Rps~~~~l~  283 (294)
T PLN00009        239 SAFPKWPPKDLATVVPT---LEPAGVDLLSKMLRLDPSKRITARAALE  283 (294)
T ss_pred             hhcccCCCCCHHHhCcC---CChHHHHHHHHHccCChhhCcCHHHHhc
Confidence                0000000000000   1134667888999999999999999985

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.97  E-value=8.5e-30  Score=280.40  Aligned_cols=241  Identities=21%  Similarity=0.315  Sum_probs=179.5

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ....+|.|++|.||+|....++..||||++..... ....++..|+..+.+...||||++++|+|.++...|+||||++ 
T Consensus        19 ~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~-   97 (296)
T cd06618          19 NLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICMELMS-   97 (296)
T ss_pred             eeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEeeccC-
Confidence            34567888999999999977799999999865422 2234466677767775569999999999999999999999986 


Q ss_pred             CCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----CC
Q 002105          766 KELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SK  836 (966)
Q Consensus       766 g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----~~  836 (966)
                      +++.++..    .++|..+..++.++++|++|||..  .+|+||||||+||+++++.  .+++.|||.+....     ..
T Consensus        98 ~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~--~~i~H~dl~p~nill~~~~--~~kL~dfg~~~~~~~~~~~~~  173 (296)
T cd06618          98 TCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEK--HGVIHRDVKPSNILLDASG--NVKLCDFGISGRLVDSKAKTR  173 (296)
T ss_pred             cCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhh--CCEecCCCcHHHEEEcCCC--CEEECccccchhccCCCcccC
Confidence            47776664    388999999999999999999942  4899999999999998654  57889999875321     22


Q ss_pred             CcCCcccccccccCCCC----CCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          837 SINSSAYVAPETKESKD----ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~----~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                      ..+++.|+|||++.+..    ++.++|||||||++|||++|+.||.......+..    ....... .     +..... 
T Consensus       174 ~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~----~~~~~~~-~-----~~~~~~-  242 (296)
T cd06618         174 SAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEFEVL----TKILQEE-P-----PSLPPN-  242 (296)
T ss_pred             CCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhHHHHH----HHHhcCC-C-----CCCCCC-
Confidence            34677899999987554    7889999999999999999999986421111111    1111111 0     000000 


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                         .....++.+++.+|++.||++||++.+++..
T Consensus       243 ---~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~  273 (296)
T cd06618         243 ---EGFSPDFCSFVDLCLTKDHRKRPKYRELLQH  273 (296)
T ss_pred             ---CCCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence               0112356778889999999999999999764

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.97  E-value=1.2e-29  Score=278.98  Aligned_cols=251  Identities=20%  Similarity=0.261  Sum_probs=178.6

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCe-----eEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKA-----AYLVY  760 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~-----~~lv~  760 (966)
                      ...+|.|++|.||+|+...++..||+|++.....  .....+.+|+..+.++-+||||+++++++...+.     .|+||
T Consensus         6 ~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~lv~   85 (295)
T cd07837           6 LEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSLYLVF   85 (295)
T ss_pred             eeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceEEEEe
Confidence            3456889999999999988899999998754321  2234577888888774457999999999987665     89999


Q ss_pred             EccCCCCHHHHHH--------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee
Q 002105          761 EYIEGKELSEVLR--------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC  832 (966)
Q Consensus       761 Ey~~~g~L~~~l~--------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~  832 (966)
                      ||+++ +|.+++.        .+++.....++.||++||+|||   ..+|+||||||+||+++.+ ...++++|||.+..
T Consensus        86 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~i~H~dl~~~nil~~~~-~~~~kl~dfg~~~~  160 (295)
T cd07837          86 EYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCH---KHGVMHRDLKPQNLLVDKQ-KGLLKIADLGLGRA  160 (295)
T ss_pred             eccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChHHEEEecC-CCeEEEeeccccee
Confidence            99995 8988874        2688999999999999999999   5689999999999999862 34678899998753


Q ss_pred             cC------CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccc
Q 002105          833 TD------SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVD  905 (966)
Q Consensus       833 ~~------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  905 (966)
                      ..      ....+++.|+|||++.+ ..++.++|||||||++|||+||+.||.+... .+...+.... ........|.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~  238 (295)
T cd07837         161 FSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSE-LQQLLHIFKL-LGTPTEQVWPG  238 (295)
T ss_pred             cCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCH-HHHHHHHHHH-hCCCChhhCcc
Confidence            21      12245778999998764 4579999999999999999999999875422 1111111110 00000000000


Q ss_pred             ----------ccccC-CCcc-hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          906 ----------PFIRG-HVSS-IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       906 ----------~~~~~-~~~~-~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                                +.... .... ......++.+++.+|++.+|++||+++|++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         239 VSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             hhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence                      00000 0000 0011235677889999999999999999874

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.97  E-value=1.7e-29  Score=270.54  Aligned_cols=237  Identities=22%  Similarity=0.353  Sum_probs=185.5

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|.|++|.||++....++..+|+|++........+.+.+|+..+.+ ++||||+++++++..++..+++|||+++++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~   83 (253)
T cd05122           5 LEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKK-CKHPNIVKYYGSYLKKDELWIVMEFCSGGS   83 (253)
T ss_pred             eeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHh-CCCCCEeEEEEEEecCCeEEEEEecCCCCc
Confidence            3456888999999999977899999999865544344567888888877 689999999999999999999999999999


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----CCCc
Q 002105          768 LSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SKSI  838 (966)
Q Consensus       768 L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----~~~~  838 (966)
                      |.+++.    .+++..+..++.+++.|++|||   ..+++||||||+||+++.+  ..+++.|+|.+....     ....
T Consensus        84 L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh---~~~i~h~dl~p~ni~i~~~--~~~~l~d~~~~~~~~~~~~~~~~~  158 (253)
T cd05122          84 LKDLLKSTNQTLTESQIAYVCKELLKGLEYLH---SNGIIHRDIKAANILLTSD--GEVKLIDFGLSAQLSDTKARNTMV  158 (253)
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh---cCCEecCCCCHHHEEEccC--CeEEEeecccccccccccccccee
Confidence            999985    3699999999999999999999   5699999999999999965  457888888775432     2345


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      ++..|+|||+..+..++.++||||||+++|||++|+.|+..... .... ....   . .......++         ...
T Consensus       159 ~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-~~~~-~~~~---~-~~~~~~~~~---------~~~  223 (253)
T cd05122         159 GTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPP-MKAL-FKIA---T-NGPPGLRNP---------EKW  223 (253)
T ss_pred             cCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCch-HHHH-HHHH---h-cCCCCcCcc---------ccc
Confidence            67889999999888899999999999999999999999864311 1111 1110   0 001110100         000


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ..++.+++.+|++.||++|||+.|+++
T Consensus       224 ~~~~~~~i~~~l~~~p~~R~t~~~~l~  250 (253)
T cd05122         224 SDEFKDFLKKCLQKNPEKRPTAEQLLK  250 (253)
T ss_pred             CHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            235667788999999999999999875

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.97  E-value=3.8e-30  Score=277.19  Aligned_cols=236  Identities=19%  Similarity=0.260  Sum_probs=183.4

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ...+|.|++|.||+++...++..||+|.+.....   ...+.+.+|+..+.+ ++||||+++++++.+++..++||||++
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~   83 (258)
T cd05578           5 LRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQE-LNHPFLVNLWYSFQDEENMYLVVDLLL   83 (258)
T ss_pred             EEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHh-CCCCChHHHHHhhcCCCeEEEEEeCCC
Confidence            3456889999999999988899999999865332   223467778877777 799999999999999999999999999


Q ss_pred             CCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----CC
Q 002105          765 GKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SK  836 (966)
Q Consensus       765 ~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----~~  836 (966)
                      +++|.+++.   .+++.....++.|+++||+|||   ..+++|+||||+||+++++.  .+++.|+|.+....     ..
T Consensus        84 ~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lh---~~~i~h~dl~~~nil~~~~~--~~~l~d~~~~~~~~~~~~~~~  158 (258)
T cd05578          84 GGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLH---SKGIIHRDIKPDNILLDEQG--HVHITDFNIATKVTPDTLTTS  158 (258)
T ss_pred             CCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeEEcCCC--CEEEeecccccccCCCccccc
Confidence            999999985   4788899999999999999999   55899999999999999754  46888888775432     22


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchH
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ  916 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  916 (966)
                      ..++..|+|||+..+..++.++||||||+++|||++|+.||......  .. ++.......   ..   +......    
T Consensus       159 ~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~-~~~~~~~~~---~~---~~~~~~~----  225 (258)
T cd05578         159 TSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRT--IR-DQIRAKQET---AD---VLYPATW----  225 (258)
T ss_pred             cCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCcc--HH-HHHHHHhcc---cc---ccCcccC----
Confidence            45778899999998888999999999999999999999998754321  11 111111111   00   0011111    


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCH--HHHH
Q 002105          917 NEIVEIMNLALHCTAGDPTARPCA--SDVT  944 (966)
Q Consensus       917 ~~~~~~~~l~~~C~~~~P~~RPt~--~~v~  944 (966)
                        ...+.+++.+||+.||.+||++  +|+.
T Consensus       226 --~~~~~~~i~~~l~~~p~~R~~~~~~~l~  253 (258)
T cd05578         226 --STEAIDAINKLLERDPQKRLGDNLKDLK  253 (258)
T ss_pred             --cHHHHHHHHHHccCChhHcCCccHHHHh
Confidence              1356678889999999999999  5543

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.97  E-value=1.6e-29  Score=280.91  Aligned_cols=187  Identities=22%  Similarity=0.361  Sum_probs=152.4

Q ss_pred             ccCCCCCccEEEEEEEec--CCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecC--CeeEEEEE
Q 002105          689 TSRGKKGVSSSYKVRSLA--NDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--KAAYLVYE  761 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~--~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--~~~~lv~E  761 (966)
                      ..+|+|++|.||+|....  ++..||+|.+....   ....+.+.+|+..+.+ ++||||+++++++...  +..++|||
T Consensus         6 ~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~~~lv~e   84 (316)
T cd07842           6 GCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRE-LKHENVVSLVEVFLEHADKSVYLLFD   84 (316)
T ss_pred             EEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHh-cCCCCccceEEEEeCCCCceEEEEEe
Confidence            457899999999999977  78999999987532   2223456778877777 7999999999999988  88999999


Q ss_pred             ccCCCCHHHHHH--------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC--CCceEEEeccccce
Q 002105          762 YIEGKELSEVLR--------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK--DEPHLRLSVPGLAY  831 (966)
Q Consensus       762 y~~~g~L~~~l~--------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~--~~~~~~~~~~~~~~  831 (966)
                      |+++ ++.+++.        .+++.....++.|++.||+|||   +.+|+||||||+||+++.+  ....++++|||++.
T Consensus        85 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~  160 (316)
T cd07842          85 YAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLH---SNWVLHRDLKPANILVMGEGPERGVVKIGDLGLAR  160 (316)
T ss_pred             CCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHH---hCCEeeCCCCHHHEEEcCCCCccceEEECCCcccc
Confidence            9985 6766663        3677888899999999999999   5689999999999999862  24567899999865


Q ss_pred             ecC---------CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          832 CTD---------SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       832 ~~~---------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                      ...         ....+++.|+|||++.+ ..++.++|||||||++|||++|+.||...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~  219 (316)
T cd07842         161 LFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGR  219 (316)
T ss_pred             ccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCC
Confidence            421         12356788999998765 45789999999999999999999998754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=8.4e-31  Score=264.42  Aligned_cols=201  Identities=22%  Similarity=0.370  Sum_probs=168.8

Q ss_pred             cHHHHHhhccccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCC
Q 002105          675 TIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK  754 (966)
Q Consensus       675 ~~~~~~~~~~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~  754 (966)
                      +++|..+-|++    ..|+|.++.|--+....+|.++|||.+.+......+..++||+.+...-.|+||++++++|+++.
T Consensus        74 ~F~d~YkLt~e----~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~  149 (463)
T KOG0607|consen   74 KFEDMYKLTSE----LLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDT  149 (463)
T ss_pred             hHHHHHHhHHH----HhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccc
Confidence            45666666654    35888888999999999999999999877666667778999999988667999999999999999


Q ss_pred             eeEEEEEccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcC-CCCceEEEeccccc
Q 002105          755 AAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDG-KDEPHLRLSVPGLA  830 (966)
Q Consensus       755 ~~~lv~Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~-~~~~~~~~~~~~~~  830 (966)
                      ..|||||-|.||.|..+|++   +++.+..++..+||.||.|||   .++|.|||+||+|||-.+ +...-+|++||+++
T Consensus       150 ~FYLVfEKm~GGplLshI~~~~~F~E~EAs~vvkdia~aLdFlH---~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLg  226 (463)
T KOG0607|consen  150 RFYLVFEKMRGGPLLSHIQKRKHFNEREASRVVKDIASALDFLH---TKGIAHRDLKPENILCESPNKVSPVKICDFDLG  226 (463)
T ss_pred             eEEEEEecccCchHHHHHHHhhhccHHHHHHHHHHHHHHHHHHh---hcCcccccCCccceeecCCCCcCceeeeccccc
Confidence            99999999999999999864   889999999999999999999   679999999999999864 33445789999876


Q ss_pred             eec----C---------CCCcCCcccccccccC-----CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCC
Q 002105          831 YCT----D---------SKSINSSAYVAPETKE-----SKDITEKGDIYGFGLILIDLLTGKSPADADFG  882 (966)
Q Consensus       831 ~~~----~---------~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~  882 (966)
                      ...    +         .+.+|+..|||||+..     ...|+.++|.||+|||+|-|++|-+||.+.-+
T Consensus       227 Sg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg  296 (463)
T KOG0607|consen  227 SGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCG  296 (463)
T ss_pred             cccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccC
Confidence            431    0         1235677899999743     45689999999999999999999999986543

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.97  E-value=2.5e-29  Score=275.19  Aligned_cols=249  Identities=20%  Similarity=0.290  Sum_probs=181.8

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecC--CeeEEEEEcc
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--KAAYLVYEYI  763 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--~~~~lv~Ey~  763 (966)
                      ...+|.|++|.||+|+...++..+|+|++....  ......+.+|+..+.+ ++|||++++++++..+  +..++||||+
T Consensus         4 ~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~~lv~e~~   82 (287)
T cd07840           4 IAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQK-LRHPNIVRLKEIVTSKGKGSIYMVFEYM   82 (287)
T ss_pred             eEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHh-ccCCCeeeheeeEecCCCCcEEEEeccc
Confidence            345688999999999998889999999987553  2223457778877777 6999999999999988  8999999999


Q ss_pred             CCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC----
Q 002105          764 EGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS----  835 (966)
Q Consensus       764 ~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~----  835 (966)
                      ++ +|.+++.    .+++..+..++.||++||+|||   ..+++|+||||+||+++++.  .++++|+|.+.....    
T Consensus        83 ~~-~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH---~~~~~h~dl~p~nil~~~~~--~~~l~d~g~~~~~~~~~~~  156 (287)
T cd07840          83 DH-DLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLH---SNGILHRDIKGSNILINNDG--VLKLADFGLARPYTKRNSA  156 (287)
T ss_pred             cc-cHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEEcCCC--CEEEccccceeeccCCCcc
Confidence            84 8988874    3789999999999999999999   45899999999999999754  468889988764322    


Q ss_pred             ---CCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccc------
Q 002105          836 ---KSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVD------  905 (966)
Q Consensus       836 ---~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------  905 (966)
                         ...++..|+|||.+.+ ..++.++||||||+++|||+||+.||..... ...+ ..............|.+      
T Consensus       157 ~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~  234 (287)
T cd07840         157 DYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTE-LEQL-EKIFELCGSPTDENWPGVSKLPW  234 (287)
T ss_pred             cccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCCh-HHHH-HHHHHHhCCCchhhccccccchh
Confidence               2345778999997654 4578999999999999999999999875432 1111 11111110000000000      


Q ss_pred             -ccc--cCCCcc----h-HH-HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          906 -PFI--RGHVSS----I-QN-EIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       906 -~~~--~~~~~~----~-~~-~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       ...  ......    . .. +..++.+++.+|++.+|.+||+++++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  283 (287)
T cd07840         235 FENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQ  283 (287)
T ss_pred             hhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence             000  000000    0 00 1346788999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.97  E-value=2.8e-30  Score=258.93  Aligned_cols=236  Identities=21%  Similarity=0.298  Sum_probs=176.2

Q ss_pred             CCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEec----CCeeEEEEEccCCCC
Q 002105          692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS----EKAAYLVYEYIEGKE  767 (966)
Q Consensus       692 g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~----~~~~~lv~Ey~~~g~  767 (966)
                      |.|-.|.|..+..+.+|..+|+|.+.+.     ....+||+.-...-.|||||.++++|..    ...+.+|||.|+||+
T Consensus        71 G~GinGkV~~C~~k~T~ekfALKvL~Ds-----~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVmE~meGGe  145 (400)
T KOG0604|consen   71 GAGINGKVVQCVHKRTQEKFALKVLLDS-----PKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVMECMEGGE  145 (400)
T ss_pred             ccccCCceEEEEeccchhhhHHHHHhcC-----HHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEeeeecccchH
Confidence            4444555888888899999999988653     3346787765554579999999999864    356789999999999


Q ss_pred             HHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcC-CCCceEEEeccccceecCC-----C
Q 002105          768 LSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDG-KDEPHLRLSVPGLAYCTDS-----K  836 (966)
Q Consensus       768 L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~-~~~~~~~~~~~~~~~~~~~-----~  836 (966)
                      |...++     .+++.+.-.|..||+.|++|||   +..|.||||||+|+|..+ ..++.+|++|||+++.+..     .
T Consensus       146 Lfsriq~~g~~afTErea~eI~~qI~~Av~~lH---~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~~L~T  222 (400)
T KOG0604|consen  146 LFSRIQDRGDQAFTEREASEIMKQIGLAVRYLH---SMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPGDLMT  222 (400)
T ss_pred             HHHHHHHcccccchHHHHHHHHHHHHHHHHHHH---hcchhhccCChhheeeecCCCCcceEecccccccccCCCccccC
Confidence            999986     3788888999999999999999   568999999999999865 3457789999999987653     3


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchH
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ  916 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  916 (966)
                      .+-||.|.|||++...+|+..+|+||+||++|-|++|-+||+...+.. .- --.+..+..+.. .+.+|    .++...
T Consensus       223 Pc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~a-is-pgMk~rI~~gqy-~FP~p----EWs~VS  295 (400)
T KOG0604|consen  223 PCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA-IS-PGMKRRIRTGQY-EFPEP----EWSCVS  295 (400)
T ss_pred             CcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCcc-CC-hhHHhHhhccCc-cCCCh----hHhHHH
Confidence            467899999999999999999999999999999999999998654321 00 000111111111 01111    111112


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          917 NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       917 ~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +   ...+++..-+..+|.+|-|+.|+.+
T Consensus       296 e---~aKdlIR~LLkt~PteRlTI~~~m~  321 (400)
T KOG0604|consen  296 E---AAKDLIRKLLKTEPTERLTIEEVMD  321 (400)
T ss_pred             H---HHHHHHHHHhcCCchhheeHHHhhc
Confidence            2   2334445556899999999999874

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.97  E-value=1.8e-29  Score=277.31  Aligned_cols=240  Identities=15%  Similarity=0.172  Sum_probs=166.0

Q ss_pred             cccCCCCCccEEEEEEEecC---CcEEEEEEEeccCccccc-----------chHHHHHHHHhhcCCCceeEEeeEEecC
Q 002105          688 LTSRGKKGVSSSYKVRSLAN---DMQFVVKKIIDVNTITTS-----------SFWPDVSQFGKLIMHPNIVRLHGVCRSE  753 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~---~~~vavk~~~~~~~~~~~-----------~~~~e~~~~~~~~~H~niv~l~g~~~~~  753 (966)
                      ...+|+||||.||+|....+   +..+|+|...........           ....+...+.. +.|+||+++++++...
T Consensus        17 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~h~~i~~~~~~~~~~   95 (294)
T PHA02882         17 DKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHN-IDHLGIPKYYGCGSFK   95 (294)
T ss_pred             eeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhcc-CCCCCCCcEEEeeeEe
Confidence            34579999999999998655   445555543221111000           01111122223 5899999999987654


Q ss_pred             C----eeEEEEEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEec
Q 002105          754 K----AAYLVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSV  826 (966)
Q Consensus       754 ~----~~~lv~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~  826 (966)
                      .    ..+++||++.. ++.+.+.   ..++.....++.|+++||+|||   +.+|+||||||+|||++.+.  .++++|
T Consensus        96 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~iiHrDiKp~Nill~~~~--~~~l~D  169 (294)
T PHA02882         96 RCRMYYRFILLEKLVE-NTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIH---EHGISHGDIKPENIMVDGNN--RGYIID  169 (294)
T ss_pred             cCCceEEEEEEehhcc-CHHHHHHhhccCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCC--cEEEEE
Confidence            3    45788888753 5555554   3678888899999999999999   56899999999999998654  467899


Q ss_pred             cccceecC-------------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhH----HH
Q 002105          827 PGLAYCTD-------------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESI----VE  889 (966)
Q Consensus       827 ~~~~~~~~-------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~----~~  889 (966)
                      ||++....             ....||+.|+|||+..+..++.++|||||||++|||+||+.||.........+    .+
T Consensus       170 FGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~  249 (294)
T PHA02882        170 YGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCD  249 (294)
T ss_pred             cCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHH
Confidence            99875321             12358999999999999999999999999999999999999997642222111    11


Q ss_pred             HHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          890 WARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       890 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                      +.......    . ..      .+   ....++.+++..|++.+|++||++.++.+.++
T Consensus       250 ~~~~~~~~----~-~~------~~---~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~~  294 (294)
T PHA02882        250 FIKRLHEG----K-IK------IK---NANKFIYDFIECVTKLSYEEKPDYDALIKIFD  294 (294)
T ss_pred             HHHHhhhh----h-hc------cC---CCCHHHHHHHHHHHhCCCCCCCCHHHHHHhhC
Confidence            11111000    0 00      00   11235667888999999999999999998763

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=3.2e-29  Score=269.00  Aligned_cols=235  Identities=21%  Similarity=0.343  Sum_probs=184.5

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ...+|+|++|.||++....++..||+|++.....  ...+.+..|++.+.+ ++|||++++++++.+++..++||||+++
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~v~e~~~~   83 (254)
T cd06627           5 GDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKN-LKHPNIVKYIGSIETSDSLYIILEYAEN   83 (254)
T ss_pred             eeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHh-CCCCCccEEEEEEEeCCEEEEEEecCCC
Confidence            3456888999999999878889999999865433  233457788888877 6999999999999999999999999999


Q ss_pred             CCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC------C
Q 002105          766 KELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS------K  836 (966)
Q Consensus       766 g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~------~  836 (966)
                      ++|.+++.   .++|..+..++.|++.|++|||   +.+|+||||||+||+++.+  ..+++.|+|.+.....      .
T Consensus        84 ~~L~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~i~~~--~~~~l~d~~~~~~~~~~~~~~~~  158 (254)
T cd06627          84 GSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLH---EQGVIHRDIKAANILTTKD--GVVKLADFGVATKLNDVSKDDAS  158 (254)
T ss_pred             CcHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCHHHEEECCC--CCEEEeccccceecCCCcccccc
Confidence            99999986   3899999999999999999999   5689999999999999964  4578899988764322      2


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchH
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ  916 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  916 (966)
                      ..++..|+|||...+..++.++||||+|+++|||++|+.|+.... ....  .|..  ...      ..+.+....    
T Consensus       159 ~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~-~~~~--~~~~--~~~------~~~~~~~~~----  223 (254)
T cd06627         159 VVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLN-PMAA--LFRI--VQD------DHPPLPEGI----  223 (254)
T ss_pred             cccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCcc-HHHH--HHHH--hcc------CCCCCCCCC----
Confidence            356788999999888888999999999999999999999986431 1111  1111  000      011111111    


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          917 NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       917 ~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                        ..++.+++.+|++.+|++||++.|++.
T Consensus       224 --~~~~~~~i~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         224 --SPELKDFLMQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             --CHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence              124567788999999999999999874

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.96  E-value=4.9e-29  Score=279.52  Aligned_cols=247  Identities=19%  Similarity=0.229  Sum_probs=179.3

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCccc--------------ccchHHHHHHHHhhcCCCceeEEeeEEecCCe
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT--------------TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKA  755 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~--------------~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~  755 (966)
                      .+|.|++|.||+|+...++..||||++.......              ...+.+|+..+.+ ++|||||++++++..++.
T Consensus        16 ~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~   94 (335)
T PTZ00024         16 HLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNE-IKHENIMGLVDVYVEGDF   94 (335)
T ss_pred             cccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHh-CCCcceeeeeEEEecCCc
Confidence            3689999999999998889999999885432221              1135677777777 699999999999999999


Q ss_pred             eEEEEEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee
Q 002105          756 AYLVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC  832 (966)
Q Consensus       756 ~~lv~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~  832 (966)
                      .++||||++ |+|.+++.   .+++.....++.|++.||+|||   ..+|+||||||+||+++.+.  .++++|||.+..
T Consensus        95 ~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH---~~~i~H~dl~~~nill~~~~--~~kl~dfg~~~~  168 (335)
T PTZ00024         95 INLVMDIMA-SDLKKVVDRKIRLTESQVKCILLQILNGLNVLH---KWYFMHRDLSPANIFINSKG--ICKIADFGLARR  168 (335)
T ss_pred             EEEEEeccc-cCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHeEECCCC--CEEECCccceee
Confidence            999999997 69999885   3788899999999999999999   56899999999999998654  468888887643


Q ss_pred             cC--------------------CCCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHH
Q 002105          833 TD--------------------SKSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWA  891 (966)
Q Consensus       833 ~~--------------------~~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~  891 (966)
                      ..                    ....+++.|+|||++.+. .++.++|||||||++|||+||+.||..... .+.. ..+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~-~~~~-~~i  246 (335)
T PTZ00024        169 YGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENE-IDQL-GRI  246 (335)
T ss_pred             cccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHH-HHH
Confidence            22                    112356789999998764 468999999999999999999999875422 1111 111


Q ss_pred             HHhhccCcccccc--------cccccCCCcch----HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          892 RYCYSDCHLDTWV--------DPFIRGHVSSI----QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       892 ~~~~~~~~~~~~~--------d~~~~~~~~~~----~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ...........|.        .+.........    .....++.+++.+|++.+|++|||++||+.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  312 (335)
T PTZ00024        247 FELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALK  312 (335)
T ss_pred             HHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhc
Confidence            1111100000000        00000000000    011235678889999999999999999986

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.96  E-value=1.3e-29  Score=284.04  Aligned_cols=254  Identities=19%  Similarity=0.266  Sum_probs=180.9

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecC-----CeeEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE-----KAAYLVY  760 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~-----~~~~lv~  760 (966)
                      ....+|.|++|.||+|+...+|..||+|++.... ......+..|+..+.+ ++|||||++++++...     ...|+||
T Consensus         9 i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~~~~~~lv~   87 (336)
T cd07849           9 NLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRR-FKHENIIGILDIIRPPSFESFNDVYIVQ   87 (336)
T ss_pred             EEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHh-CCCCCcCchhheeecccccccceEEEEe
Confidence            3445688999999999998899999999985432 2223446678777777 6999999999987654     3579999


Q ss_pred             EccCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          761 EYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       761 Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      ||++ ++|.++++  .+++.....++.|+++||+|||   +.+|+||||||+||+++.+.  .++++|||++....    
T Consensus        88 e~~~-~~l~~~~~~~~l~~~~~~~i~~ql~~aL~~LH---~~~ivH~dlkp~Nill~~~~--~~kl~dfg~~~~~~~~~~  161 (336)
T cd07849          88 ELME-TDLYKLIKTQHLSNDHIQYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTNC--DLKICDFGLARIADPEHD  161 (336)
T ss_pred             hhcc-cCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEECCCC--CEEECcccceeecccccc
Confidence            9998 58888886  4889999999999999999999   55899999999999998654  47889999875422    


Q ss_pred             -----CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccc---ccc
Q 002105          835 -----SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDT---WVD  905 (966)
Q Consensus       835 -----~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d  905 (966)
                           ....+++.|+|||++.+ ..++.++|||||||++|||+||+.||.+... .... .+..........+.   ..+
T Consensus       162 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~  239 (336)
T cd07849         162 HTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDY-LHQL-NLILGVLGTPSQEDLNCIIS  239 (336)
T ss_pred             ccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHH-HHHHHHcCCCCHHHHHHhhc
Confidence                 12356888999998654 5688999999999999999999999864311 1111 11111010000000   000


Q ss_pred             cc-------cc-CCCcch----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH--HHH
Q 002105          906 PF-------IR-GHVSSI----QNEIVEIMNLALHCTAGDPTARPCASDVTKT--LES  949 (966)
Q Consensus       906 ~~-------~~-~~~~~~----~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~--L~~  949 (966)
                      ..       .. ......    .....++.+++.+|++.+|++|||+.|+++.  ++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~  297 (336)
T cd07849         240 LRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQ  297 (336)
T ss_pred             hhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccc
Confidence            00       00 000000    0112357788999999999999999999875  555

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.96  E-value=6.2e-30  Score=281.71  Aligned_cols=236  Identities=21%  Similarity=0.310  Sum_probs=182.6

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .....+|+|-|+.|..+++..++.+||+|.+.+...  ...+.+.+|++.+.. +.|||||+++.+...+..+|+||||+
T Consensus        59 ~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~-l~HPnIvkl~~v~~t~~~lylV~eya  137 (596)
T KOG0586|consen   59 VIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKS-LNHPNIVKLFSVIETEATLYLVMEYA  137 (596)
T ss_pred             eeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHh-cCCcceeeeeeeeeecceeEEEEEec
Confidence            344567999999999999999999999997755422  223457788877666 79999999999999999999999999


Q ss_pred             CCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-----CC
Q 002105          764 EGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-----DS  835 (966)
Q Consensus       764 ~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-----~~  835 (966)
                      .+|.+++|+.+   ........++.|+.+|++|||   +..|||||||++|||||.++.  ++++|||++...     ..
T Consensus       138 ~~ge~~~yl~~~gr~~e~~ar~~F~q~vsaveYcH---~k~ivHrdLk~eNilL~~~mn--ikIaDfgfS~~~~~~~~lq  212 (596)
T KOG0586|consen  138 SGGELFDYLVKHGRMKEKEARAKFRQIVSAVEYCH---SKNIVHRDLKAENILLDENMN--IKIADFGFSTFFDYGLMLQ  212 (596)
T ss_pred             cCchhHHHHHhcccchhhhhhhhhHHHHHHHHHHh---hcceeccccchhhcccccccc--eeeeccccceeeccccccc
Confidence            99999999963   555778889999999999999   568999999999999997654  789999998653     34


Q ss_pred             CCcCCcccccccccCCCCC-CCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          836 KSINSSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~-~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ..+|++.|.|||.+.+..| ++++|+||+||++|-|+.|..||++..-.  ..   -..+..+ ..+  ++-.+.     
T Consensus       213 t~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk--~L---r~rvl~g-k~r--Ip~~ms-----  279 (596)
T KOG0586|consen  213 TFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLK--EL---RPRVLRG-KYR--IPFYMS-----  279 (596)
T ss_pred             ccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccc--cc---cchheee-eec--ccceee-----
Confidence            5689999999999999888 56999999999999999999999864210  00   0000000 000  111111     


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                           .++-+++.+-+..+|.+|++++++.+
T Consensus       280 -----~dce~lLrk~lvl~Pskr~~~dqim~  305 (596)
T KOG0586|consen  280 -----CDCEDLLRKFLVLNPSKRGPCDQIMK  305 (596)
T ss_pred             -----chhHHHHHHhhccCccccCCHHHhhh
Confidence                 12334445566789999999998864

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.96  E-value=5.5e-29  Score=275.77  Aligned_cols=252  Identities=21%  Similarity=0.278  Sum_probs=179.3

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc--cccchHHHHHHHHhhcCCCceeEEeeEEecC--CeeEEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--KAAYLVYE  761 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--~~~~lv~E  761 (966)
                      .....+|.|++|.||+|....+|..||+|++......  ....+.+|+..+.+ ++||||+++++++...  +..++|||
T Consensus        10 ~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~~~lv~e   88 (309)
T cd07845          10 EKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLN-LRHPNIVELKEVVVGKHLDSIFLVME   88 (309)
T ss_pred             eEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHh-CCCCCCcceEEEEecCCCCeEEEEEe
Confidence            3344578999999999999888999999988643221  12345678777777 7999999999998764  56899999


Q ss_pred             ccCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC--
Q 002105          762 YIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--  835 (966)
Q Consensus       762 y~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~--  835 (966)
                      |++ ++|.+++..    ++|.+...++.|+++|++|||   ..+++||||||+||+++.+.  .+++.|||.+.....  
T Consensus        89 ~~~-~~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~--~~kL~dfg~~~~~~~~~  162 (309)
T cd07845          89 YCE-QDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLH---ENFIIHRDLKVSNLLLTDKG--CLKIADFGLARTYGLPA  162 (309)
T ss_pred             cCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCC--CEEECccceeeecCCcc
Confidence            998 488887753    789999999999999999999   55899999999999998654  578899998764321  


Q ss_pred             ----CCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccc-----
Q 002105          836 ----KSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVD-----  905 (966)
Q Consensus       836 ----~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----  905 (966)
                          ...+++.|+|||.+.+ ..++.++||||+||++|||++|+.||.+... .+.+ ..............|.+     
T Consensus       163 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~  240 (309)
T cd07845         163 KPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSE-IEQL-DLIIQLLGTPNESIWPGFSDLP  240 (309)
T ss_pred             CCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCH-HHHH-HHHHHhcCCCChhhchhhhccc
Confidence                1234677999998765 5578999999999999999999999875421 1111 11111111000000000     


Q ss_pred             ---c-cccC-CCcchH----HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          906 ---P-FIRG-HVSSIQ----NEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       906 ---~-~~~~-~~~~~~----~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                         . .+.. ......    ....+..+++.+|++.||++|||+.|++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h  290 (309)
T cd07845         241 LVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALES  290 (309)
T ss_pred             ccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence               0 0000 000000    012345678889999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.96  E-value=2.2e-29  Score=267.51  Aligned_cols=217  Identities=24%  Similarity=0.292  Sum_probs=167.0

Q ss_pred             CCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCHHHHHH
Q 002105          694 KGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR  773 (966)
Q Consensus       694 ~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L~~~l~  773 (966)
                      |.++.||++++..++..+|+|++....     .+..|...+.. ..||||+++++++.+++..++||||+++|+|.+++.
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~-----~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~   77 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS-----EYSRERLTIIP-HCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHIS   77 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh-----hhhhHHHHHHh-cCCCceeehhhheecCCeEEEEEecCCCCCHHHHHH
Confidence            567779999999999999999986532     23344444444 479999999999999999999999999999999885


Q ss_pred             ---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC---CCcCCccccccc
Q 002105          774 ---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS---KSINSSAYVAPE  847 (966)
Q Consensus       774 ---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~---~~~~~~~y~aPE  847 (966)
                         .+++.....++.|+++||+|||   ..+|+||||||+||+++.+..  +++.+||.......   ...++..|+|||
T Consensus        78 ~~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~--~~l~df~~~~~~~~~~~~~~~~~~y~aPE  152 (237)
T cd05576          78 KFLNIPEECVKRWAAEMVVALDALH---REGIVCRDLNPNNILLDDRGH--IQLTYFSRWSEVEDSCDGEAVENMYCAPE  152 (237)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEEcCCCC--EEEecccchhccccccccCCcCccccCCc
Confidence               3899999999999999999999   569999999999999997654  67788886543222   234567799999


Q ss_pred             ccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHH
Q 002105          848 TKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLAL  927 (966)
Q Consensus       848 ~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~  927 (966)
                      +..+..++.++||||+||++|||++|+.|+......   .        .. .    ....+....+      .++.+++.
T Consensus       153 ~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~---~--------~~-~----~~~~~~~~~~------~~~~~li~  210 (237)
T cd05576         153 VGGISEETEACDWWSLGAILFELLTGKTLVECHPSG---I--------NT-H----TTLNIPEWVS------EEARSLLQ  210 (237)
T ss_pred             ccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchh---c--------cc-c----cccCCcccCC------HHHHHHHH
Confidence            998888999999999999999999999886532100   0        00 0    0000111111      24567788


Q ss_pred             HccCCCCCCCCCHHHH
Q 002105          928 HCTAGDPTARPCASDV  943 (966)
Q Consensus       928 ~C~~~~P~~RPt~~~v  943 (966)
                      +|++.||++||++.++
T Consensus       211 ~~l~~dp~~R~~~~~~  226 (237)
T cd05576         211 QLLQFNPTERLGAGVA  226 (237)
T ss_pred             HHccCCHHHhcCCCcc
Confidence            9999999999998544

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=3.1e-30  Score=301.29  Aligned_cols=240  Identities=23%  Similarity=0.361  Sum_probs=175.0

Q ss_pred             cccccccCCCCCccEEEEEEEecCCcEEEEEEEecc-CcccccchHHHHHHHHhhcCCCceeEEeeEEec----------
Q 002105          684 TEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV-NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS----------  752 (966)
Q Consensus       684 ~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~-~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~----------  752 (966)
                      +.+.+.-.|+||||.|||++-+-+|+.+||||+.-. .....+...+|+..+++ ++|||||++|..+.+          
T Consensus       480 DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LAr-LnHpNVVRYysAWVEs~~~~~~~ei  558 (1351)
T KOG1035|consen  480 DFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLAR-LNHPNVVRYYSAWVESTAELTVLEI  558 (1351)
T ss_pred             hhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhccCCccccccc
Confidence            345667789999999999999999999999999643 23334457889999999 699999999853210          


Q ss_pred             --------------------------------------------------------------------------------
Q 002105          753 --------------------------------------------------------------------------------  752 (966)
Q Consensus       753 --------------------------------------------------------------------------------  752 (966)
                                                                                                      
T Consensus       559 ~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS~~e~  638 (1351)
T KOG1035|consen  559 VASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTSDSEG  638 (1351)
T ss_pred             cccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCcccccccccccccccccccCC
Confidence                                                                                            


Q ss_pred             ---------------------C--------CeeEEEEEccCCCCHHHHHHc--C--CHHHHHHHHHHHHHHHHHHhhcCC
Q 002105          753 ---------------------E--------KAAYLVYEYIEGKELSEVLRN--L--SWERRRKVAIGIAKALRFLHFHCS  799 (966)
Q Consensus       753 ---------------------~--------~~~~lv~Ey~~~g~L~~~l~~--l--~~~~~~~i~~~ia~~l~yLH~~~~  799 (966)
                                           +        -.+||=||||+.-.+.++++.  +  .-...++++.+|++||+|+|   .
T Consensus       639 ~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH---~  715 (1351)
T KOG1035|consen  639 SVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIH---D  715 (1351)
T ss_pred             ccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH---h
Confidence                                 0        125888999998888888864  2  24566899999999999999   6


Q ss_pred             CCeEeecCCCCcEEEcCCCCceEEEecccccee------------------------cCCCCcCCcccccccccCCCC--
Q 002105          800 PSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------------------------TDSKSINSSAYVAPETKESKD--  853 (966)
Q Consensus       800 ~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~y~aPE~~~~~~--  853 (966)
                      .+||||||||.||++|++  ..||++|||++..                        ..+..+||..|+|||.+.+..  
T Consensus       716 ~giIHRDLKP~NIFLd~~--~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~  793 (1351)
T KOG1035|consen  716 QGIIHRDLKPRNIFLDSR--NSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSN  793 (1351)
T ss_pred             CceeeccCCcceeEEcCC--CCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccc
Confidence            689999999999999955  4589999998754                        112357899999999987654  


Q ss_pred             -CCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCC
Q 002105          854 -ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAG  932 (966)
Q Consensus       854 -~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~  932 (966)
                       |+.|+|+||+|||++||+.   ||...   ++.+.  +-...+++....-  +.+      ..++..+-.+++.+.++.
T Consensus       794 ~Yn~KiDmYSLGIVlFEM~y---PF~Ts---MERa~--iL~~LR~g~iP~~--~~f------~~~~~~~e~slI~~Ll~h  857 (1351)
T KOG1035|consen  794 KYNSKIDMYSLGIVLFEMLY---PFGTS---MERAS--ILTNLRKGSIPEP--ADF------FDPEHPEEASLIRWLLSH  857 (1351)
T ss_pred             cccchhhhHHHHHHHHHHhc---cCCch---HHHHH--HHHhcccCCCCCC--ccc------ccccchHHHHHHHHHhcC
Confidence             9999999999999999986   45432   22221  1111122222110  000      012223334566677899


Q ss_pred             CCCCCCCHHHHHH
Q 002105          933 DPTARPCASDVTK  945 (966)
Q Consensus       933 ~P~~RPt~~~v~~  945 (966)
                      ||++|||+.|++.
T Consensus       858 dP~kRPtA~eLL~  870 (1351)
T KOG1035|consen  858 DPSKRPTATELLN  870 (1351)
T ss_pred             CCccCCCHHHHhh
Confidence            9999999999864

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.96  E-value=3.1e-29  Score=269.54  Aligned_cols=234  Identities=18%  Similarity=0.296  Sum_probs=183.7

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ..+|.|++|.||++....++..+|+|++....  .....++..|+..+.+ ++||||+++++++.+++..++||||++++
T Consensus         6 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~v~e~~~~~   84 (256)
T cd08530           6 KKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILAS-VNHPNIISYKEAFLDGNKLCIVMEYAPFG   84 (256)
T ss_pred             eeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHh-CCCCCchhhhhhhccCCEEEEEehhcCCC
Confidence            44678899999999988899999999986432  2223456677777777 69999999999999999999999999999


Q ss_pred             CHHHHHHc-------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----C
Q 002105          767 ELSEVLRN-------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----S  835 (966)
Q Consensus       767 ~L~~~l~~-------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----~  835 (966)
                      +|.+++..       +++.....++.+++.||+|||   +.+++||||||+||+++++  ..+++.|+|.+....    .
T Consensus        85 ~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh---~~~i~h~~l~~~ni~~~~~--~~~kl~d~g~~~~~~~~~~~  159 (256)
T cd08530          85 DLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALH---EQKILHRDLKSANILLVAN--DLVKIGDLGISKVLKKNMAK  159 (256)
T ss_pred             CHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCcceEEEecC--CcEEEeeccchhhhccCCcc
Confidence            99999854       789999999999999999999   5689999999999999974  457888888765422    2


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...+++.|+|||+..+..++.++|+||||+++|||++|+.||....  ........    ......    + +.      
T Consensus       160 ~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~--~~~~~~~~----~~~~~~----~-~~------  222 (256)
T cd08530         160 TQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARS--MQDLRYKV----QRGKYP----P-IP------  222 (256)
T ss_pred             cccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHH----hcCCCC----C-Cc------
Confidence            2357889999999999999999999999999999999999986531  11111111    111110    0 10      


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .....++.+++.+|++.+|++||++.|+++
T Consensus       223 ~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  252 (256)
T cd08530         223 PIYSQDLQNFIRSMLQVKPKLRPNCDKILA  252 (256)
T ss_pred             hhhCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            122245778889999999999999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.96  E-value=7.8e-29  Score=271.33  Aligned_cols=249  Identities=20%  Similarity=0.288  Sum_probs=179.8

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhh--cCCCceeEEeeEEecCCe-----eEEE
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKL--IMHPNIVRLHGVCRSEKA-----AYLV  759 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~--~~H~niv~l~g~~~~~~~-----~~lv  759 (966)
                      ..+|.|++|.||+++...++..||+|++.....  .....+..|+..+.++  ++||||+++++++...+.     .+++
T Consensus         5 ~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~l~   84 (287)
T cd07838           5 AEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLTLV   84 (287)
T ss_pred             EEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCceeEEE
Confidence            456888999999999977799999999863322  1223455666655442  369999999999988776     9999


Q ss_pred             EEccCCCCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          760 YEYIEGKELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      |||++ ++|.++++     .++|..+..++.|+++||+|||   ..+++|+||||+||+++.+  ..++++|||.+....
T Consensus        85 ~e~~~-~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH---~~~i~h~~l~~~nili~~~--~~~~l~dfg~~~~~~  158 (287)
T cd07838          85 FEHVD-QDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLH---SHRIVHRDLKPQNILVTSD--GQVKIADFGLARIYS  158 (287)
T ss_pred             ehhcc-cCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhEEEccC--CCEEEeccCcceecc
Confidence            99998 58988875     2789999999999999999999   5589999999999999976  457889999875432


Q ss_pred             -----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccc----
Q 002105          835 -----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVD----  905 (966)
Q Consensus       835 -----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----  905 (966)
                           ....++..|+|||+..+..++.++|||||||++|||+||++|+..... .+....+........ ...+..    
T Consensus       159 ~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~  236 (287)
T cd07838         159 FEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSE-ADQLDKIFDVIGLPS-EEEWPRNVSL  236 (287)
T ss_pred             CCcccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCCh-HHHHHHHHHHcCCCC-hHhcCCCccc
Confidence                 123467789999999988999999999999999999999999875422 221212211110000 000000    


Q ss_pred             --ccccCCC----cc-hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          906 --PFIRGHV----SS-IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       906 --~~~~~~~----~~-~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                        +......    .. ..+-..++.+++.+||+.||++||++.|++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         237 PRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             chhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence              0000000    00 0112245667889999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.96  E-value=4.1e-29  Score=276.93  Aligned_cols=251  Identities=18%  Similarity=0.274  Sum_probs=176.4

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc--cccchHHHHHHHHhhcCCCceeEEeeEEecCC--------e
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK--------A  755 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~--------~  755 (966)
                      .....+|.|++|.||+|+...++..||||++......  ....+.+|+..+.+ ++||||++++++|...+        .
T Consensus        15 ~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~~~~~~~   93 (310)
T cd07865          15 EKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQL-LKHENVVNLIEICRTKATPYNRYKGS   93 (310)
T ss_pred             EEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHh-CCCCCccceEEEEecccccccCCCce
Confidence            4455678899999999999889999999988643222  12234567776666 69999999999987654        3


Q ss_pred             eEEEEEccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccce
Q 002105          756 AYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY  831 (966)
Q Consensus       756 ~~lv~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~  831 (966)
                      .++||||++ ++|.+++.    .+++.+...++.||+.||+|||   ..+++||||||+||+++.+.  .++++|||.+.
T Consensus        94 ~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dl~p~nil~~~~~--~~kl~dfg~~~  167 (310)
T cd07865          94 FYLVFEFCE-HDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIH---RNKILHRDMKAANILITKDG--ILKLADFGLAR  167 (310)
T ss_pred             EEEEEcCCC-cCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEECCCC--cEEECcCCCcc
Confidence            599999997 48888775    3789999999999999999999   45899999999999998654  57888998775


Q ss_pred             ecCC----------CCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcc
Q 002105          832 CTDS----------KSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHL  900 (966)
Q Consensus       832 ~~~~----------~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  900 (966)
                      ....          ...++..|+|||+..+. .++.++|||||||++|||+||+.|+...... ... +...........
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~-~~~-~~~~~~~~~~~~  245 (310)
T cd07865         168 AFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQ-HQL-TLISQLCGSITP  245 (310)
T ss_pred             cccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHH-HHH-HHHHHHhCCCCh
Confidence            3211          12456789999987654 4788999999999999999999998754221 111 111110000000


Q ss_pred             cc--------cccc-cccCCC-cchHH------HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          901 DT--------WVDP-FIRGHV-SSIQN------EIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       901 ~~--------~~d~-~~~~~~-~~~~~------~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +.        ..+. ...... .....      +...+.+++.+|++.||++|||++|+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~  306 (310)
T cd07865         246 EVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALN  306 (310)
T ss_pred             hhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhc
Confidence            00        0000 000000 00000      1124567899999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.96  E-value=1.5e-29  Score=285.60  Aligned_cols=189  Identities=21%  Similarity=0.333  Sum_probs=155.4

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEecC------Cee
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE------KAA  756 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~------~~~  756 (966)
                      +.....+|+|++|.||+++...++..||+|++...  .......+.+|+..+.+ ++||||+++++++..+      ...
T Consensus        18 y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~~~~~   96 (353)
T cd07850          18 YQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKL-VNHKNIIGLLNVFTPQKSLEEFQDV   96 (353)
T ss_pred             eEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHh-cCCCCCcceeeeeccCCCccccCcE
Confidence            34455679999999999999889999999987532  12223346677776666 7999999999998643      357


Q ss_pred             EEEEEccCCCCHHHHHH-cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC
Q 002105          757 YLVYEYIEGKELSEVLR-NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS  835 (966)
Q Consensus       757 ~lv~Ey~~~g~L~~~l~-~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~  835 (966)
                      |+||||++ |+|.+++. .+++.....++.|++.||+|||   ..+|+||||||+||+++.+.  .+++.|||.+.....
T Consensus        97 ~lv~e~~~-~~l~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~gi~H~dlkp~Nil~~~~~--~~kL~Dfg~~~~~~~  170 (353)
T cd07850          97 YLVMELMD-ANLCQVIQMDLDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDC--TLKILDFGLARTAGT  170 (353)
T ss_pred             EEEEeccC-CCHHHHHhhcCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCC--CEEEccCccceeCCC
Confidence            99999997 58888775 4888999999999999999999   55999999999999999765  478899998765322


Q ss_pred             -----CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          836 -----KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       836 -----~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                           ...+++.|+|||+..+..++.++|||||||++|||++|+.||...
T Consensus       171 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~  220 (353)
T cd07850         171 SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGT  220 (353)
T ss_pred             CCCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCC
Confidence                 235678899999999999999999999999999999999998653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.96  E-value=6.5e-29  Score=267.18  Aligned_cols=236  Identities=24%  Similarity=0.350  Sum_probs=184.2

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecC--CeeEEEEEccC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--KAAYLVYEYIE  764 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--~~~~lv~Ey~~  764 (966)
                      ..+|+|++|.||+|....++..|++|++.....  ...+.+.+|+..+.+ ++||||+++++++...  +..++||||++
T Consensus         6 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~~lv~e~~~   84 (260)
T cd06606           6 ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSS-LQHPNIVRYYGSERDEEKNTLNIFLEYVS   84 (260)
T ss_pred             eEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHH-cCCCCEeeEEEEEecCCCCeEEEEEEecC
Confidence            346788999999999977899999998865432  234567788887777 6999999999999988  89999999999


Q ss_pred             CCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-------
Q 002105          765 GKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------  834 (966)
Q Consensus       765 ~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-------  834 (966)
                      +++|.+++.   .++|..+..++.+++.|++|||   +.+++|+||+|+||+++.+  ..+++.++|.+....       
T Consensus        85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~~~h~dl~p~ni~i~~~--~~~~l~d~~~~~~~~~~~~~~~  159 (260)
T cd06606          85 GGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLH---SNGIVHRDIKGANILVDSD--GVVKLADFGCAKRLGDIETGEG  159 (260)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEcCC--CCEEEcccccEEeccccccccc
Confidence            999999986   4789999999999999999999   4689999999999999974  456888888775432       


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                       ....++..|+|||...+..++.++||||||+++|||++|+.|+..........  +.  .......     +.+.... 
T Consensus       160 ~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~--~~--~~~~~~~-----~~~~~~~-  229 (260)
T cd06606         160 TGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNPMAAL--YK--IGSSGEP-----PEIPEHL-  229 (260)
T ss_pred             ccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHH--Hh--ccccCCC-----cCCCccc-
Confidence             22357788999999988889999999999999999999999987543111111  10  0000000     1111111 


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                           ..++.+++.+|++.+|++||++.|++.
T Consensus       230 -----~~~l~~~i~~~l~~~p~~Rp~~~~ll~  256 (260)
T cd06606         230 -----SEEAKDFLRKCLRRDPKKRPTADELLQ  256 (260)
T ss_pred             -----CHHHHHHHHHhCcCChhhCCCHHHHhh
Confidence                 235667788999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.96  E-value=1.7e-29  Score=283.87  Aligned_cols=256  Identities=20%  Similarity=0.301  Sum_probs=181.5

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCC------eeE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK------AAY  757 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~------~~~  757 (966)
                      .....+|+|++|.||+|+...+|..||||++....  ......+.+|+..+.+ ++||||+++++++....      ..+
T Consensus        18 ~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~-l~h~niv~~~~~~~~~~~~~~~~~~~   96 (342)
T cd07879          18 TSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKH-MQHENVIGLLDVFTSAVSGDEFQDFY   96 (342)
T ss_pred             EEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHh-cCCCCccchhheecccccCCCCceEE
Confidence            34456788999999999988889999999886432  1122346778877777 69999999999987543      469


Q ss_pred             EEEEccCCCCHHHHHH-cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-
Q 002105          758 LVYEYIEGKELSEVLR-NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-  835 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~-~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-  835 (966)
                      +||||++ ++|.++.. .+++.....++.|++.||+|||   ..+|+||||||+||+++.+.  .++++|||++..... 
T Consensus        97 lv~e~~~-~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~i~H~dlkp~NIll~~~~--~~kL~dfg~~~~~~~~  170 (342)
T cd07879          97 LVMPYMQ-TDLQKIMGHPLSEDKVQYLVYQMLCGLKYIH---SAGIIHRDLKPGNLAVNEDC--ELKILDFGLARHADAE  170 (342)
T ss_pred             EEecccc-cCHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCC--CEEEeeCCCCcCCCCC
Confidence            9999997 48887765 5899999999999999999999   55899999999999999754  578899998765322 


Q ss_pred             --CCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHH----------hhccCcccc
Q 002105          836 --KSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARY----------CYSDCHLDT  902 (966)
Q Consensus       836 --~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~----------~~~~~~~~~  902 (966)
                        ...+++.|+|||+..+ ..++.++|||||||++|||++|+.||.+... ...+......          ...+.....
T Consensus       171 ~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (342)
T cd07879         171 MTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDY-LDQLTQILKVTGVPGPEFVQKLEDKAAKS  249 (342)
T ss_pred             CCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHhcCCCCHHHHHHhcccchHH
Confidence              2356788999998866 4688999999999999999999999975421 1111010000          000000000


Q ss_pred             ccc--ccc-cCCCcc-hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHH
Q 002105          903 WVD--PFI-RGHVSS-IQNEIVEIMNLALHCTAGDPTARPCASDVTK--TLES  949 (966)
Q Consensus       903 ~~d--~~~-~~~~~~-~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~--~L~~  949 (966)
                      +++  |.. ...... ......++.+++.+|++.||++||+++||+.  .++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~  302 (342)
T cd07879         250 YIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDS  302 (342)
T ss_pred             HHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhh
Confidence            000  000 000000 0011234667889999999999999999984  3666

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.96  E-value=7.1e-29  Score=273.93  Aligned_cols=246  Identities=22%  Similarity=0.304  Sum_probs=177.2

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCC----------e
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK----------A  755 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~----------~  755 (966)
                      ...+|.|++|.||+|....++..||+|++.....  .....+.+|+..+.+ ++||||+++++++.++.          .
T Consensus        12 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~-l~h~~i~~~~~~~~~~~~~~~~~~~~~~   90 (302)
T cd07864          12 IGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQ-LNHRNIVNLKEIVTDKQDALDFKKDKGA   90 (302)
T ss_pred             eeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHh-CCCCCeeeeeheecCcchhhhccccCCc
Confidence            3456888999999999988899999998864322  222345677777776 69999999999997655          7


Q ss_pred             eEEEEEccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccce
Q 002105          756 AYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY  831 (966)
Q Consensus       756 ~~lv~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~  831 (966)
                      .++||||+++ ++.+.+.    .++|.....++.||+.||+|||   ..+|+||||||+||+++++.  .+++.|+|.+.
T Consensus        91 ~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~i~H~dl~p~nili~~~~--~~kl~dfg~~~  164 (302)
T cd07864          91 FYLVFEYMDH-DLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCH---KKNFLHRDIKCSNILLNNKG--QIKLADFGLAR  164 (302)
T ss_pred             EEEEEcccCc-cHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCC--cEEeCcccccc
Confidence            8999999986 6777665    3799999999999999999999   55999999999999999654  57888998875


Q ss_pred             ecCC-------CCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccc
Q 002105          832 CTDS-------KSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTW  903 (966)
Q Consensus       832 ~~~~-------~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  903 (966)
                      ....       ...++..|+|||.+.+ ..++.++|||||||++|||++|+.||..... .+.+......+ .......+
T Consensus       165 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~  242 (302)
T cd07864         165 LYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQE-LAQLELISRLC-GSPCPAVW  242 (302)
T ss_pred             cccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCh-HHHHHHHHHHh-CCCChhhc
Confidence            4221       1234678999998764 4578899999999999999999999875321 11111111111 00000000


Q ss_pred             c-----------cc------cccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          904 V-----------DP------FIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       904 ~-----------d~------~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .           ++      ..+.....   ...++.+++.+|++.+|++||++++|+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~~P~~Rp~~~~il~  298 (302)
T cd07864         243 PDVIKLPYFNTMKPKKQYRRRLREEFSF---IPTPALDLLDHMLTLDPSKRCTAEEALN  298 (302)
T ss_pred             ccccccccccccccccccccchhhhcCC---CCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            0           00      00000000   1245678889999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.96  E-value=3.1e-29  Score=274.03  Aligned_cols=249  Identities=23%  Similarity=0.332  Sum_probs=180.2

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcC-CCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIM-HPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~-H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ..+|.|++|.||+|....++..||+|++..... .......+|+..+.+ ++ ||||+++++++..++..++||||+ +|
T Consensus         5 ~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~-~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~   82 (283)
T cd07830           5 KQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRK-LNEHPNIVKLKEVFRENDELYFVFEYM-EG   82 (283)
T ss_pred             eeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHh-ccCCCCchhHHHHhhcCCcEEEEEecC-CC
Confidence            356889999999999977889999999865422 222234567777777 57 999999999999999999999999 78


Q ss_pred             CHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-----C
Q 002105          767 ELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----K  836 (966)
Q Consensus       767 ~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-----~  836 (966)
                      +|.++++     .++|..+..++.|++.||.|||   ..+++|+||||+||+++++.  .++++|+|.+.....     .
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh---~~~i~H~dl~~~ni~i~~~~--~~~l~d~~~~~~~~~~~~~~~  157 (283)
T cd07830          83 NLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIH---KHGFFHRDLKPENLLVSGPE--VVKIADFGLAREIRSRPPYTD  157 (283)
T ss_pred             CHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCC--CEEEeecccceeccCCCCcCC
Confidence            9998885     3689999999999999999999   55899999999999999654  568889988764322     2


Q ss_pred             CcCCcccccccccC-CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHH------------HHHHhhccCccccc
Q 002105          837 SINSSAYVAPETKE-SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVE------------WARYCYSDCHLDTW  903 (966)
Q Consensus       837 ~~~~~~y~aPE~~~-~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~------------~~~~~~~~~~~~~~  903 (966)
                      ..++..|+|||+.. ...++.++||||||++++||+||+.||..... .+.+.+            |.............
T Consensus       158 ~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (283)
T cd07830         158 YVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSE-IDQLYKICSVLGTPTKQDWPEGYKLASKLGFR  236 (283)
T ss_pred             CCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCCh-HHHHHHHHHhcCCCChhhhhhHhhhhcccccc
Confidence            35678899999874 45578999999999999999999999865422 111100            11100000000000


Q ss_pred             ccccccCCCcc-hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          904 VDPFIRGHVSS-IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       904 ~d~~~~~~~~~-~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +.......... ......++.+++.+|++.+|++|||++|++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  279 (283)
T cd07830         237 FPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQ  279 (283)
T ss_pred             ccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhh
Confidence            00000000000 0011245778899999999999999999875

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.96  E-value=8.1e-29  Score=274.71  Aligned_cols=234  Identities=19%  Similarity=0.278  Sum_probs=177.3

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc---ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ..+|.|++|.||+|+...++..||+|++.......   ...+..|+..+.+ ++|||++++++++.+++..|+||||+. 
T Consensus        27 ~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~-  104 (313)
T cd06633          27 HEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQ-LKHPNTIEYKGCYLKEHTAWLVMEYCL-  104 (313)
T ss_pred             eeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHh-CCCCCCccEEEEEEeCCEEEEEEecCC-
Confidence            34789999999999988889999999886432221   2346677777766 799999999999999999999999997 


Q ss_pred             CCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--CCCcC
Q 002105          766 KELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--SKSIN  839 (966)
Q Consensus       766 g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--~~~~~  839 (966)
                      |++.+++.    .++|.++..++.|++.|++|||   ..+++||||||+||+++.+.  .+++.|+|.+....  ....+
T Consensus       105 ~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH---~~gi~H~dl~p~nili~~~~--~~kL~dfg~~~~~~~~~~~~~  179 (313)
T cd06633         105 GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLH---SHNMIHRDIKAGNILLTEPG--QVKLADFGSASKSSPANSFVG  179 (313)
T ss_pred             CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChhhEEECCCC--CEEEeecCCCcccCCCCCccc
Confidence            57777764    3789999999999999999999   55899999999999998654  47888888765422  23467


Q ss_pred             CcccccccccC---CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchH
Q 002105          840 SSAYVAPETKE---SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ  916 (966)
Q Consensus       840 ~~~y~aPE~~~---~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  916 (966)
                      +..|+|||++.   ...++.++|||||||++|||++|+.|+..... .... ...   .... .....    ...+    
T Consensus       180 ~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~-~~~~-~~~---~~~~-~~~~~----~~~~----  245 (313)
T cd06633         180 TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA-MSAL-YHI---AQND-SPTLQ----SNEW----  245 (313)
T ss_pred             cccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCh-HHHH-HHH---HhcC-CCCCC----cccc----
Confidence            88999999874   45688899999999999999999999864311 1111 111   1100 00000    0011    


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          917 NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       917 ~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                        ...+.+++.+|++.+|.+||++.+++.
T Consensus       246 --~~~l~~li~~~l~~~P~~Rp~~~~~l~  272 (313)
T cd06633         246 --TDSFRGFVDYCLQKIPQERPASAELLR  272 (313)
T ss_pred             --CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence              124566778999999999999999885

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.96  E-value=5.3e-29  Score=275.64  Aligned_cols=237  Identities=22%  Similarity=0.300  Sum_probs=179.1

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ...+|.|++|.||+|+...++..+|+|++.....   ...+++..|+..+.+ ++|||++++++++..++..++||||+.
T Consensus        20 ~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~   98 (308)
T cd06634          20 LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQK-LRHPNTIQYRGCYLREHTAWLVMEYCL   98 (308)
T ss_pred             HHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHh-CCCCCcccEEEEEEcCCeeEEEEEccC
Confidence            3456888999999999988899999998854221   122346677777776 799999999999999999999999997


Q ss_pred             CCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--CCCc
Q 002105          765 GKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--SKSI  838 (966)
Q Consensus       765 ~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--~~~~  838 (966)
                       |++.+++.    .+++.++..++.+++.|+.|||   ..+++||||||+||+++.+  ..++++|||.+....  ....
T Consensus        99 -~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH---~~~i~H~dl~p~nil~~~~--~~~kl~dfg~~~~~~~~~~~~  172 (308)
T cd06634          99 -GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEP--GLVKLGDFGSASIMAPANXFV  172 (308)
T ss_pred             -CCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHhEEECCC--CcEEECCcccceeecCccccc
Confidence             68877764    3788899999999999999999   5589999999999999865  457889999875432  3346


Q ss_pred             CCcccccccccC---CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          839 NSSAYVAPETKE---SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       839 ~~~~y~aPE~~~---~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      +++.|+|||++.   ...++.++|||||||++|||++|+.|+.... ..+....+..    . ..     |....     
T Consensus       173 ~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-~~~~~~~~~~----~-~~-----~~~~~-----  236 (308)
T cd06634         173 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN-AMSALYHIAQ----N-ES-----PALQS-----  236 (308)
T ss_pred             CCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCcccc-HHHHHHHHhh----c-CC-----CCcCc-----
Confidence            788999999874   3567889999999999999999999975421 1111111111    0 00     11100     


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTKTL  947 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L  947 (966)
                      ......+.+++.+||+.+|++||++.+|+..-
T Consensus       237 ~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~  268 (308)
T cd06634         237 GHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHR  268 (308)
T ss_pred             ccccHHHHHHHHHHhhCCcccCCCHHHHhhCc
Confidence            01123456778899999999999999998653

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.96  E-value=9.6e-29  Score=265.77  Aligned_cols=234  Identities=24%  Similarity=0.370  Sum_probs=183.4

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ..+|.|++|.||++....++..||+|++.....  ....++..|++.+.+ ++|||++++++.+..++..++||||++++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~~~~~~~~~~~~~~~~lv~e~~~~~   84 (258)
T cd08215           6 KQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKK-LNHPNIIKYYESFEEKGKLCIVMEYADGG   84 (258)
T ss_pred             eeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHh-cCCCChhheEEEEecCCEEEEEEEecCCC
Confidence            446889999999999988899999999865432  334456777777777 69999999999999999999999999999


Q ss_pred             CHHHHHHc-------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC----
Q 002105          767 ELSEVLRN-------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS----  835 (966)
Q Consensus       767 ~L~~~l~~-------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~----  835 (966)
                      +|.++++.       +++.+...++.++++||+|||   ..+++|+||||+||+++.+  ..++++|+|.+.....    
T Consensus        85 ~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh---~~~~~H~dl~~~nil~~~~--~~~~l~d~~~~~~~~~~~~~  159 (258)
T cd08215          85 DLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLH---SRKILHRDIKPQNIFLTSN--GLVKLGDFGISKVLSSTVDL  159 (258)
T ss_pred             cHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHHeEEcCC--CcEEECCccceeecccCcce
Confidence            99998853       789999999999999999999   4599999999999999964  4578889888754222    


Q ss_pred             --CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          836 --KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       836 --~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                        ...+++.|+|||...+..++.++||||+|+++|||++|+.|+....  ..   +........ .    .++ +.... 
T Consensus       160 ~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~--~~---~~~~~~~~~-~----~~~-~~~~~-  227 (258)
T cd08215         160 AKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGEN--LL---ELALKILKG-Q----YPP-IPSQY-  227 (258)
T ss_pred             ecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCc--HH---HHHHHHhcC-C----CCC-CCCCC-
Confidence              2356788999999988889999999999999999999999986431  11   111111111 1    111 11111 


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                           ..++.+++.+|++.+|++|||+.|+++
T Consensus       228 -----~~~~~~~i~~~l~~~p~~Rp~~~~ll~  254 (258)
T cd08215         228 -----SSELRNLVSSLLQKDPEERPSIAQILQ  254 (258)
T ss_pred             -----CHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence                 135667888999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.96  E-value=5.9e-29  Score=278.26  Aligned_cols=257  Identities=21%  Similarity=0.288  Sum_probs=187.5

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCC-----eeEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK-----AAYLVY  760 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~-----~~~lv~  760 (966)
                      ...+|.|++|.||+|+...++..||+|++....  ....+.+.+|+..+.+ ++||||+++++++...+     ..|+||
T Consensus         5 ~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~~~~~lv~   83 (330)
T cd07834           5 LKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRH-LRHENIIGLLDILRPPSPEDFNDVYIVT   83 (330)
T ss_pred             eeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHh-cCCcchhhhhhhhcccCcccccceEEEe
Confidence            345788999999999987789999999986543  3334567888888777 69999999999998775     789999


Q ss_pred             EccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC--
Q 002105          761 EYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--  835 (966)
Q Consensus       761 Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~--  835 (966)
                      ||++ ++|.++++.   +++..+..++.+++.||+|||   ..+|+||||||+||+++.+  ..++++|+|.+.....  
T Consensus        84 e~~~-~~l~~~l~~~~~l~~~~~~~i~~~l~~~l~~LH---~~gi~H~dlkp~nili~~~--~~~~L~dfg~~~~~~~~~  157 (330)
T cd07834          84 ELME-TDLHKVIKSPQPLTDDHIQYFLYQILRGLKYLH---SANVIHRDLKPSNILVNSN--CDLKICDFGLARGVDPDE  157 (330)
T ss_pred             cchh-hhHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCC--CCEEEcccCceEeecccc
Confidence            9998 589988863   789999999999999999999   5589999999999999976  4578899998764321  


Q ss_pred             -------CCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcc-------
Q 002105          836 -------KSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHL-------  900 (966)
Q Consensus       836 -------~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~-------  900 (966)
                             ...+++.|+|||++.+. .++.++||||||+++|||+||+.||..... .+.. +...........       
T Consensus       158 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~-~~~~-~~i~~~~~~~~~~~~~~~~  235 (330)
T cd07834         158 DEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDY-IDQL-NLIVEVLGTPSEEDLKFIT  235 (330)
T ss_pred             cccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCH-HHHH-HHHHHhcCCCChhHhhhcc
Confidence                   23467789999999887 789999999999999999999999875421 1111 111111000000       


Q ss_pred             ----cccccccccCCCcch----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH--HHHhhccC
Q 002105          901 ----DTWVDPFIRGHVSSI----QNEIVEIMNLALHCTAGDPTARPCASDVTKT--LESCFRIS  954 (966)
Q Consensus       901 ----~~~~d~~~~~~~~~~----~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~--L~~~~~~~  954 (966)
                          ..++...........    .....++.+++.+||+.+|++||++.+++..  ++. ++..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~-~~~~  298 (330)
T cd07834         236 SEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQ-LHDP  298 (330)
T ss_pred             ccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHh-hccc
Confidence                000000000000000    0112356778899999999999999999874  655 4443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.96  E-value=2.2e-29  Score=281.98  Aligned_cols=249  Identities=18%  Similarity=0.269  Sum_probs=178.7

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEec----CCeeEEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS----EKAAYLVYE  761 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~----~~~~~lv~E  761 (966)
                      ...+|.|++|.||++....+|..||+|++.....  .....+..|+..+.+ ++|||||++++++..    ....++|||
T Consensus        10 ~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~~~~~lv~e   88 (334)
T cd07855          10 IENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRH-FKHDNIIAIRDILRPPGADFKDVYVVMD   88 (334)
T ss_pred             eeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHh-cCCCCccCHHHhccccCCCCceEEEEEe
Confidence            3456889999999999988999999999864321  223446677777766 799999999998863    356899999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      |++ |+|.++++   .+++.....++.||+.||+|||   ..+|+||||||+||+++.++  .++++|||.+....    
T Consensus        89 ~~~-~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~Nil~~~~~--~~kl~dfg~~~~~~~~~~  162 (334)
T cd07855          89 LME-SDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIH---SANVIHRDLKPSNLLVNEDC--ELRIGDFGMARGLSSSPT  162 (334)
T ss_pred             hhh-hhHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCC--cEEecccccceeecccCc
Confidence            996 68999885   4799999999999999999999   55899999999999999654  57889999875421    


Q ss_pred             ------CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccC---------
Q 002105          835 ------SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDC---------  898 (966)
Q Consensus       835 ------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~---------  898 (966)
                            ....++..|+|||.+.. ..++.++|||||||++|||++|+.||...... ..+ ..........         
T Consensus       163 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~-~~~-~~~~~~~g~~~~~~~~~~~  240 (334)
T cd07855         163 EHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYV-HQL-KLILSVLGSPSEEVLNRIG  240 (334)
T ss_pred             CCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChH-HHH-HHHHHHhCCChhHhhhhhc
Confidence                  12357788999998765 56899999999999999999999999754221 111 1111000000         


Q ss_pred             --cccccccccccCCCcch----HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          899 --HLDTWVDPFIRGHVSSI----QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       899 --~~~~~~d~~~~~~~~~~----~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                        ......+..........    .....++.+++.+|++.+|++||++++++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  293 (334)
T cd07855         241 SDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQ  293 (334)
T ss_pred             hhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence              00000000000000000    011245778889999999999999999876

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.96  E-value=4e-29  Score=273.02  Aligned_cols=248  Identities=20%  Similarity=0.268  Sum_probs=181.0

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc--cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ..+|.|++|.||++....++..+|+|++......  ....+..|+..+.+ ++||||+++++++..++..++||||+++ 
T Consensus         5 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~v~e~~~~-   82 (283)
T cd05118           5 GKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKE-LNHPNIIKLLDVFRHKGDLYLVFEFMDT-   82 (283)
T ss_pred             eeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHH-hcCCCcchHHHhhccCCCEEEEEeccCC-
Confidence            4568889999999999888999999988644322  23456777777777 6999999999999999999999999985 


Q ss_pred             CHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC------C
Q 002105          767 ELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS------K  836 (966)
Q Consensus       767 ~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~------~  836 (966)
                      ++.+++.    .+++..+..++.++++||+|||   ..+|+|+||||+||+++.+.  .+++.|||.+.....      .
T Consensus        83 ~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~p~nili~~~~--~~~l~df~~~~~~~~~~~~~~~  157 (283)
T cd05118          83 DLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCH---SHGILHRDLKPENLLINTEG--VLKLADFGLARSFGSPVRPYTH  157 (283)
T ss_pred             CHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHH---HCCeeecCcCHHHEEECCCC--cEEEeeeeeeEecCCCcccccC
Confidence            8888774    4789999999999999999999   55899999999999999654  578888887654321      2


Q ss_pred             CcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccC---ccccccc------c
Q 002105          837 SINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDC---HLDTWVD------P  906 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d------~  906 (966)
                      ..++..|+|||...+. .++.++|||||||++|||+||+.||..... .+.+..... .....   ....+.+      .
T Consensus       158 ~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  235 (283)
T cd05118         158 YVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSE-IDQLFKIFR-TLGTPDPEVWPKFTSLARNYKF  235 (283)
T ss_pred             ccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHH-HcCCCchHhcccchhhhhhhhh
Confidence            3467789999998776 789999999999999999999999865322 111111110 00000   0000000      0


Q ss_pred             ccc-CCCcc----hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          907 FIR-GHVSS----IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       907 ~~~-~~~~~----~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ... .....    ......++.+++..||+.||.+||++.+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         236 SFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             hhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence            000 00000    0112346778899999999999999999875

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.96  E-value=7.9e-29  Score=271.60  Aligned_cols=242  Identities=20%  Similarity=0.256  Sum_probs=182.1

Q ss_pred             ccCCCCCccEEEEEEEe---cCCcEEEEEEEeccCc----ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          689 TSRGKKGVSSSYKVRSL---ANDMQFVVKKIIDVNT----ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~---~~~~~vavk~~~~~~~----~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ..+|+|++|.||+++..   .++..||||.+.....    ...+.+..|+..+.++-+||||+++++++..++..++|||
T Consensus         6 ~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~e   85 (288)
T cd05583           6 RVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLHLILD   85 (288)
T ss_pred             EEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEEEEEe
Confidence            44688999999998853   3567899998864321    1234567788777774469999999999999999999999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      |+++|+|.+++.   .+++.....++.|+++||+|||   ..+++||||||+||+++.+.  .+++.|||++....    
T Consensus        86 ~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~~~~~H~dl~p~nil~~~~~--~~~l~dfg~~~~~~~~~~  160 (288)
T cd05583          86 YVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLH---QLGIIYRDIKLENILLDSEG--HVVLTDFGLSKEFLAEEE  160 (288)
T ss_pred             cCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCC--CEEEEECccccccccccc
Confidence            999999999885   3788889999999999999999   56899999999999998654  47889998765421    


Q ss_pred             ---CCCcCCcccccccccCCCC--CCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccccc
Q 002105          835 ---SKSINSSAYVAPETKESKD--ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~~~--~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                         ....++..|+|||...+..  ++.++||||||+++|||+||+.||...... ....+........       ++...
T Consensus       161 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~-~~~~~~~~~~~~~-------~~~~~  232 (288)
T cd05583         161 ERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQ-NSQSEISRRILKS-------KPPFP  232 (288)
T ss_pred             cccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCccc-chHHHHHHHHHcc-------CCCCC
Confidence               1235788999999987655  788999999999999999999998643111 1111222221111       11111


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      ...      ..++.+++.+|++.+|++|||+++|.+.|+.
T Consensus       233 ~~~------~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~  266 (288)
T cd05583         233 KTM------SAEARDFIQKLLEKDPKKRLGANGADEIKNH  266 (288)
T ss_pred             ccc------CHHHHHHHHHHhcCCHhhccCcchHHHHhcC
Confidence            111      1245667889999999999999999888875

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.3e-28  Score=266.18  Aligned_cols=234  Identities=17%  Similarity=0.279  Sum_probs=176.6

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccC-----cccccchHHHHHHHHhhcCCCceeEEeeEEecC--CeeEEEEE
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-----TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--KAAYLVYE  761 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-----~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--~~~~lv~E  761 (966)
                      ..+|+|++|.||+++...++..||+|.+....     ......+.+|+..+.+ ++||||+++++++.+.  +..++|||
T Consensus         8 ~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~-l~h~~i~~~~~~~~~~~~~~~~~v~e   86 (264)
T cd06653           8 KLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKN-LRHDRIVQYYGCLRDPEEKKLSIFVE   86 (264)
T ss_pred             eeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHH-cCCCCcceEEEEEEcCCCCEEEEEEE
Confidence            34688999999999998889999999874321     1122356677777777 6999999999998764  46889999


Q ss_pred             ccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          762 YIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       762 y~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      |+++++|.+++..   +++....+++.+++.||+|||   +.+++||||||+||+++.+.  .++++|||++....    
T Consensus        87 ~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH---~~~i~H~dl~p~ni~i~~~~--~~~l~dfg~~~~~~~~~~  161 (264)
T cd06653          87 YMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLH---SNMIVHRDIKGANILRDSAG--NVKLGDFGASKRIQTICM  161 (264)
T ss_pred             eCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCC--CEEECccccccccccccc
Confidence            9999999999863   788889999999999999999   55899999999999998654  46788998875321    


Q ss_pred             -----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccccc
Q 002105          835 -----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       835 -----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                           ....++..|+|||+..+..++.++|||||||++||+++|+.||... .....+.+...   ..      ..+.+.
T Consensus       162 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-~~~~~~~~~~~---~~------~~~~~p  231 (264)
T cd06653         162 SGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEY-EAMAAIFKIAT---QP------TKPMLP  231 (264)
T ss_pred             cCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCcc-CHHHHHHHHHc---CC------CCCCCC
Confidence                 1235788999999999888999999999999999999999998643 11221111110   00      111111


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ...   .   .++.+++.+|++ +|.+||++.+++.
T Consensus       232 ~~~---~---~~~~~~i~~~l~-~~~~r~~~~~~~~  260 (264)
T cd06653         232 DGV---S---DACRDFLKQIFV-EEKRRPTAEFLLR  260 (264)
T ss_pred             ccc---C---HHHHHHHHHHhc-CcccCccHHHHhc
Confidence            111   1   245667778998 5799999997754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.96  E-value=6.1e-29  Score=279.27  Aligned_cols=253  Identities=21%  Similarity=0.273  Sum_probs=179.5

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecC------------
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE------------  753 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~------------  753 (966)
                      .....+|.|++|.||+|+...+|..||+|++........+.+..|+..+.+ ++||||+++++++...            
T Consensus         8 ~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~-l~h~~i~~~~~~~~~~~~~~~~~~~~~~   86 (342)
T cd07854           8 MDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRR-LDHDNIVKVYEVLGPSGSDLTEDVGSLT   86 (342)
T ss_pred             EEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHh-cCCCcchhhHhhhccccccccccccccc
Confidence            344557899999999999988999999999866554444567778887777 6999999999876543            


Q ss_pred             --CeeEEEEEccCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccc
Q 002105          754 --KAAYLVYEYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL  829 (966)
Q Consensus       754 --~~~~lv~Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~  829 (966)
                        ...|+||||++ ++|.+++.  .+++.....++.||++||+|||   ..+|+||||||+||+++.+ ...+++.+||.
T Consensus        87 ~~~~~~lv~e~~~-~~L~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~givH~dikp~Nili~~~-~~~~kl~dfg~  161 (342)
T cd07854          87 ELNSVYIVQEYME-TDLANVLEQGPLSEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANVFINTE-DLVLKIGDFGL  161 (342)
T ss_pred             ccceEEEEeeccc-ccHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCC-CceEEECCccc
Confidence              35799999998 59988885  4889999999999999999999   5589999999999999853 24578899998


Q ss_pred             ceecC---------CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhc-cC
Q 002105          830 AYCTD---------SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYS-DC  898 (966)
Q Consensus       830 ~~~~~---------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~-~~  898 (966)
                      +....         ....++..|+|||.+.. ..++.++|||||||++|||++|+.||...... +........... ..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~-~~~~~~~~~~~~~~~  240 (342)
T cd07854         162 ARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHEL-EQMQLILESVPVVRE  240 (342)
T ss_pred             ceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHhcCCCCh
Confidence            75321         12246778999997654 56788999999999999999999999653211 111111000000 00


Q ss_pred             --------cc-cccccccccCCCc--c-hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          899 --------HL-DTWVDPFIRGHVS--S-IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       899 --------~~-~~~~d~~~~~~~~--~-~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                              .. ............+  . ......++.+++..|++.||++|||+.|++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~  299 (342)
T cd07854         241 EDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALM  299 (342)
T ss_pred             HHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhC
Confidence                    00 0000000000000  0 0011135667889999999999999999974

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=7.3e-29  Score=295.35  Aligned_cols=241  Identities=24%  Similarity=0.395  Sum_probs=189.1

Q ss_pred             cCCCCCccEEEEEEEe---c----CCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          690 SRGKKGVSSSYKVRSL---A----NDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~---~----~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ..|.|.||.|++|...   .    ....||||.+..... ...+.+..|+..+....+|||||.++|+|...+..++|+|
T Consensus       303 ~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~~~~~v~E  382 (609)
T KOG0200|consen  303 YLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQDGPLYVIVE  382 (609)
T ss_pred             eeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccCCceEEEEE
Confidence            6789999999999753   1    245799998875433 3456688899888888889999999999999999999999


Q ss_pred             ccCCCCHHHHHH--c-----------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceE
Q 002105          762 YIEGKELSEVLR--N-----------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL  822 (966)
Q Consensus       762 y~~~g~L~~~l~--~-----------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~  822 (966)
                      |++.|+|.++|+  +                 ++......++.|||.|++||+   +.++||||+-+.|||+..+  ..+
T Consensus       383 y~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~---~~~~vHRDLAaRNVLi~~~--~~~  457 (609)
T KOG0200|consen  383 YAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLA---SVPCVHRDLAARNVLITKN--KVI  457 (609)
T ss_pred             eccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHh---hCCccchhhhhhhEEecCC--CEE
Confidence            999999999996  3                 667788999999999999999   5689999999999999976  457


Q ss_pred             EEeccccceecCC-------CCcC--CcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHH
Q 002105          823 RLSVPGLAYCTDS-------KSIN--SSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWAR  892 (966)
Q Consensus       823 ~~~~~~~~~~~~~-------~~~~--~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~  892 (966)
                      |++|||+++....       ...+  ...|||||.+....|+.|+|||||||+|||++| |..||.+- .....+.++.+
T Consensus       458 kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~-~~~~~l~~~l~  536 (609)
T KOG0200|consen  458 KIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGI-PPTEELLEFLK  536 (609)
T ss_pred             EEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCC-CcHHHHHHHHh
Confidence            8999999974211       1122  235999999999999999999999999999999 78888652 21222234333


Q ss_pred             HhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 002105          893 YCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCF  951 (966)
Q Consensus       893 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~  951 (966)
                      .   +.+.+.   |         ..+..++.++|..||+.+|++||++.|+++.++..+
T Consensus       537 ~---G~r~~~---P---------~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~l  580 (609)
T KOG0200|consen  537 E---GNRMEQ---P---------EHCSDEIYDLMKSCWNADPEDRPTFSECVEFFEKHL  580 (609)
T ss_pred             c---CCCCCC---C---------CCCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHH
Confidence            2   111111   1         122346778899999999999999999999998843

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.96  E-value=1.8e-28  Score=273.54  Aligned_cols=253  Identities=21%  Similarity=0.295  Sum_probs=181.5

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEec-CCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS-EKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~-~~~~~lv~Ey  762 (966)
                      .....+|.|++|.||+++...++..||+|++....  ....+.+..|+..+.+ ++|||||++++++.. .+..++||||
T Consensus        13 ~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~-l~hpniv~~~~~~~~~~~~~~lv~e~   91 (328)
T cd07856          13 VDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKH-LRHENIISLSDIFISPLEDIYFVTEL   91 (328)
T ss_pred             EEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHh-cCCCCeeeEeeeEecCCCcEEEEeeh
Confidence            44566789999999999998899999999885422  2223456778877777 799999999999876 5678999999


Q ss_pred             cCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---CCC
Q 002105          763 IEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---SKS  837 (966)
Q Consensus       763 ~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---~~~  837 (966)
                      + +++|.++++  .+++.....++.|+++||+|||   ..+|+||||||+||+++++  ..+++.|||.+....   ...
T Consensus        92 ~-~~~L~~~~~~~~~~~~~~~~~~~ql~~aL~~LH---~~~iiH~dl~p~Nili~~~--~~~~l~dfg~~~~~~~~~~~~  165 (328)
T cd07856          92 L-GTDLHRLLTSRPLEKQFIQYFLYQILRGLKYVH---SAGVVHRDLKPSNILINEN--CDLKICDFGLARIQDPQMTGY  165 (328)
T ss_pred             h-ccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEeECCC--CCEEeCccccccccCCCcCCC
Confidence            8 468999886  4778888899999999999999   5689999999999999865  457889999875432   223


Q ss_pred             cCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchh--hHH--------HHHHHhhccCcccccccc
Q 002105          838 INSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHE--SIV--------EWARYCYSDCHLDTWVDP  906 (966)
Q Consensus       838 ~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~d~  906 (966)
                      .+++.|+|||++.+ ..++.++|||||||++|||+||+.||........  .+.        +|..........+. ...
T Consensus       166 ~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  244 (328)
T cd07856         166 VSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRF-VQS  244 (328)
T ss_pred             cccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHH-Hhh
Confidence            56788999998765 5689999999999999999999999865321100  000        11111000000000 000


Q ss_pred             cccCCCcchHH----HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          907 FIRGHVSSIQN----EIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       907 ~~~~~~~~~~~----~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      ..........+    ...++.+++.+|++.+|++|||+.+++..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~  288 (328)
T cd07856         245 LPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAH  288 (328)
T ss_pred             ccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            00000000000    12457778899999999999999998754

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.96  E-value=3.9e-29  Score=276.94  Aligned_cols=231  Identities=26%  Similarity=0.323  Sum_probs=178.5

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ....|.|.++.|-++.+..+++..+||.+.+..    .+-.+|+....+.-.|||||++.++|.++...|+|||++.||-
T Consensus       327 ~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~----~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~g~e  402 (612)
T KOG0603|consen  327 REELGEGSFSAVKYCESSPTDQEPAVKIISKRA----DDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELLDGGE  402 (612)
T ss_pred             ccccCCCCccceeeeeccccccchhheeccccc----cccccccchhhhhcCCCcceeecceecCCceeeeeehhccccH
Confidence            334788989989999999999999999986552    2223455455554589999999999999999999999999999


Q ss_pred             HHHHHHcCCH--HHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCC---CcCCcc
Q 002105          768 LSEVLRNLSW--ERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSA  842 (966)
Q Consensus       768 L~~~l~~l~~--~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  842 (966)
                      +.+.+.....  .++..|+.+++.|+.|||   ..+|||||+||+|||++ +...++++.+||.++.....   .+-|..
T Consensus       403 ll~ri~~~~~~~~e~~~w~~~lv~Av~~LH---~~gvvhRDLkp~NIL~~-~~~g~lrltyFG~a~~~~~~~~tp~~t~~  478 (612)
T KOG0603|consen  403 LLRRIRSKPEFCSEASQWAAELVSAVDYLH---EQGVVHRDLKPGNILLD-GSAGHLRLTYFGFWSELERSCDTPALTLQ  478 (612)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHHH---hcCeeecCCChhheeec-CCCCcEEEEEechhhhCchhhcccchhhc
Confidence            9888764333  466679999999999999   56999999999999997 34556899999998764432   345778


Q ss_pred             cccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHH
Q 002105          843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEI  922 (966)
Q Consensus       843 y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  922 (966)
                      |.|||+.....||+++|+|||||+||||+||+.||.......+..     ..+..        |......   .+   +.
T Consensus       479 y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~~ei~-----~~i~~--------~~~s~~v---S~---~A  539 (612)
T KOG0603|consen  479 YVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAGIEIH-----TRIQM--------PKFSECV---SD---EA  539 (612)
T ss_pred             ccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCchHHHH-----HhhcC--------Ccccccc---CH---HH
Confidence            999999999999999999999999999999999998654431211     11111        1111111   22   33


Q ss_pred             HHHHHHccCCCCCCCCCHHHHHH
Q 002105          923 MNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       923 ~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .++...|++.||.+||+|.++..
T Consensus       540 KdLl~~LL~~dP~~Rl~~~~i~~  562 (612)
T KOG0603|consen  540 KDLLQQLLQVDPALRLGADEIGA  562 (612)
T ss_pred             HHHHHHhccCChhhCcChhhhcc
Confidence            45667899999999999999864

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.96  E-value=1.9e-28  Score=268.84  Aligned_cols=238  Identities=21%  Similarity=0.293  Sum_probs=176.3

Q ss_pred             cccCCCCCccEEEEEEEe---cCCcEEEEEEEeccCcc----cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSL---ANDMQFVVKKIIDVNTI----TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~---~~~~~vavk~~~~~~~~----~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      ...+|.|++|.||+++..   .+|..||+|.+......    ..+.+..|+..+.++-+||||+++++++..++..|+||
T Consensus         5 ~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (290)
T cd05613           5 LKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLHLIL   84 (290)
T ss_pred             eeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEEEEE
Confidence            345689999999999874   47889999988643221    22345667777766436999999999999999999999


Q ss_pred             EccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC--
Q 002105          761 EYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--  835 (966)
Q Consensus       761 Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~--  835 (966)
                      ||+++|+|.+++..   +++.....++.|+++||+|||   ..+++||||||+||+++.+.  +++++|||++.....  
T Consensus        85 e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH---~~~i~H~dl~p~nil~~~~~--~~kl~dfg~~~~~~~~~  159 (290)
T cd05613          85 DYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLH---KLGIIYRDIKLENILLDSNG--HVVLTDFGLSKEFHEDE  159 (290)
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeEECCCC--CEEEeeCccceeccccc
Confidence            99999999999863   788888889999999999999   56899999999999998754  578899998754221  


Q ss_pred             -----CCcCCcccccccccCCC--CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccc
Q 002105          836 -----KSINSSAYVAPETKESK--DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI  908 (966)
Q Consensus       836 -----~~~~~~~y~aPE~~~~~--~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  908 (966)
                           ...++..|+|||+....  .++.++|||||||++|||+||+.|+..... .....++.......       .+..
T Consensus       160 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~-~~~~~~~~~~~~~~-------~~~~  231 (290)
T cd05613         160 VERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGE-KNSQAEISRRILKS-------EPPY  231 (290)
T ss_pred             ccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCc-cccHHHHHHHhhcc-------CCCC
Confidence                 23478899999998753  468899999999999999999999864311 11111222221111       0111


Q ss_pred             cCCCcchHHHHHHHHHHHHHccCCCCCCCC-----CHHHHH
Q 002105          909 RGHVSSIQNEIVEIMNLALHCTAGDPTARP-----CASDVT  944 (966)
Q Consensus       909 ~~~~~~~~~~~~~~~~l~~~C~~~~P~~RP-----t~~~v~  944 (966)
                      ....      ...+.+++.+|++.+|++||     ++.++.
T Consensus       232 ~~~~------~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~  266 (290)
T cd05613         232 PQEM------SALAKDIIQRLLMKDPKKRLGCGPSDADEIK  266 (290)
T ss_pred             CccC------CHHHHHHHHHHhcCCHHHhcCCCCCCHHHHH
Confidence            1111      12456778899999999997     455554

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.96  E-value=2.8e-29  Score=279.78  Aligned_cols=192  Identities=24%  Similarity=0.303  Sum_probs=161.8

Q ss_pred             cccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCC-----CceeEEeeEEecCCeeEE
Q 002105          684 TEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMH-----PNIVRLHGVCRSEKAAYL  758 (966)
Q Consensus       684 ~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H-----~niv~l~g~~~~~~~~~l  758 (966)
                      .++...-+|+|.||.|.||.+..+++.||||.+....... .+-..|+..+..+-+|     -|+|++++|+...++.+|
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~-~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hlci  265 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFL-RQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCI  265 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChHHH-HHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceee
Confidence            4566777899999999999999999999999886543322 2334566666663213     379999999999999999


Q ss_pred             EEEccCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec
Q 002105          759 VYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT  833 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~  833 (966)
                      |+|.++ -+|.++|+.     ++....+.++.||+.||.+||   ..+|||+||||+||||-+.....||+.|||.+...
T Consensus       266 VfELL~-~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~---~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~  341 (586)
T KOG0667|consen  266 VFELLS-TNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLH---ELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFE  341 (586)
T ss_pred             eehhhh-hhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCChhheeeccCCcCceeEEeccccccc
Confidence            999987 699999973     888999999999999999999   56999999999999998888889999999988654


Q ss_pred             CCCC---cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          834 DSKS---INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       834 ~~~~---~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                      ....   +-+..|.|||++.+.+|+.+.|+||||||+.||+||.+-|.++
T Consensus       342 ~q~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~  391 (586)
T KOG0667|consen  342 SQRVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGD  391 (586)
T ss_pred             CCcceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCC
Confidence            4333   3466899999999999999999999999999999997766654

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.96  E-value=6.8e-29  Score=278.39  Aligned_cols=250  Identities=18%  Similarity=0.292  Sum_probs=181.1

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEecC-----CeeEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE-----KAAYLVY  760 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~-----~~~~lv~  760 (966)
                      ...+|+|++|.||+++...++..||+|++...  .......+..|+..+.+ ++||||+++++++...     ...|+||
T Consensus        10 ~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~ni~~~~~~~~~~~~~~~~~~~lv~   88 (337)
T cd07858          10 IKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRH-LDHENVIAIKDIMPPPHREAFNDVYIVY   88 (337)
T ss_pred             EEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHh-cCCCCccchHHheecccccccCcEEEEE
Confidence            44578899999999999889999999998643  22223346677777666 7999999999988654     3579999


Q ss_pred             EccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC--
Q 002105          761 EYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--  835 (966)
Q Consensus       761 Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~--  835 (966)
                      ||+. ++|.+++.   .+++.....++.|++.||+|||   ..+++||||||+||+++.+.  .+++.|||++.....  
T Consensus        89 e~~~-~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i~H~dlkp~Nil~~~~~--~~kL~Dfg~~~~~~~~~  162 (337)
T cd07858          89 ELMD-TDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIH---SANVLHRDLKPSNLLLNANC--DLKICDFGLARTTSEKG  162 (337)
T ss_pred             eCCC-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCC--CEEECcCccccccCCCc
Confidence            9997 78988885   4789999999999999999999   55899999999999998654  578899998764321  


Q ss_pred             ----CCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhcc-----------Cc
Q 002105          836 ----KSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD-----------CH  899 (966)
Q Consensus       836 ----~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-----------~~  899 (966)
                          ...++..|+|||.+.. ..++.++|||||||++|||++|+.||.+.... ... +........           ..
T Consensus       163 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~  240 (337)
T cd07858         163 DFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYV-HQL-KLITELLGSPSEEDLGFIRNEK  240 (337)
T ss_pred             ccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChH-HHH-HHHHHHhCCCChHHhhhcCchh
Confidence                2356788999998764 46889999999999999999999998654211 111 100000000           00


Q ss_pred             cccc-------ccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH--HHH
Q 002105          900 LDTW-------VDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT--LES  949 (966)
Q Consensus       900 ~~~~-------~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~--L~~  949 (966)
                      ...+       .++......+   ....++.+++.+|++.+|++|||++|+++.  ++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~  296 (337)
T cd07858         241 ARRYIRSLPYTPRQSFARLFP---HANPLAIDLLEKMLVFDPSKRITVEEALAHPYLAS  296 (337)
T ss_pred             hhHHHHhcCcccccCHHHHcc---cCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhh
Confidence            0000       0000000000   112456788899999999999999999865  555

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.96  E-value=5.3e-29  Score=268.61  Aligned_cols=233  Identities=18%  Similarity=0.272  Sum_probs=176.2

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-----ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-----ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-----~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ..+|+|++|.||+++....+..+++|.+.....     .....+..|+..+.+ ++||||+++++++.+++..++||||+
T Consensus         6 ~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (260)
T cd08222           6 QRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSK-LDHPAIVKFHASFLERDAFCIITEYC   84 (260)
T ss_pred             eeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHh-CCCCcHHHHHHHHhcCCceEEEEEeC
Confidence            457899999999999877666666665543211     112234566666666 79999999999999999999999999


Q ss_pred             CCCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          764 EGKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       764 ~~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      ++++|.++++       .++|..+..++.|++.|++|||   ..+++|+||||+||+++.+   .++++|+|.+....  
T Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~h~~l~~~nili~~~---~~~l~d~g~~~~~~~~  158 (260)
T cd08222          85 EGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMH---QRRILHRDLKAKNIFLKNN---LLKIGDFGVSRLLMGS  158 (260)
T ss_pred             CCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHH---HcCccccCCChhheEeecC---CEeecccCceeecCCC
Confidence            9999998875       3789999999999999999999   5699999999999999853   37889998765421  


Q ss_pred             ----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                          ....+++.|+|||+..+..++.++||||||+++|||++|+.|+.... ..    +........      ..|....
T Consensus       159 ~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~-~~----~~~~~~~~~------~~~~~~~  227 (260)
T cd08222         159 CDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQN-FL----SVVLRIVEG------PTPSLPE  227 (260)
T ss_pred             cccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCcc-HH----HHHHHHHcC------CCCCCcc
Confidence                22357789999999988889999999999999999999999986431 11    111111111      1111111


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                            ....++.+++.+|++.+|++||++.|+++
T Consensus       228 ------~~~~~~~~li~~~l~~~p~~Rp~~~~il~  256 (260)
T cd08222         228 ------TYSRQLNSIMQSMLNKDPSLRPSAAEILR  256 (260)
T ss_pred             ------hhcHHHHHHHHHHhcCChhhCcCHHHHhh
Confidence                  11235667888999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.96  E-value=2.3e-28  Score=270.96  Aligned_cols=251  Identities=20%  Similarity=0.304  Sum_probs=176.1

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc--cccchHHHHHHHHhhcCCCceeEEeeEEecC--------Cee
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--------KAA  756 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--------~~~  756 (966)
                      ....+|.|++|.||+|....++..+|+|++......  ....+.+|+..+.+ ++||||+++++++.+.        ...
T Consensus        12 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~~~~~~~~   90 (311)
T cd07866          12 ILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKK-LKHPNVVPLIDMAVERPDKSKRKRGSV   90 (311)
T ss_pred             EEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHh-cCCCCccchhhheecccccccccCceE
Confidence            344578999999999999888999999998654322  23356778887776 7999999999987543        346


Q ss_pred             EEEEEccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee
Q 002105          757 YLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC  832 (966)
Q Consensus       757 ~lv~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~  832 (966)
                      ++||||+++ ++.+.+.    .+++.+...++.|+++||+|||   ..+|+||||||+||+++++.  .+++.|+|.+..
T Consensus        91 ~lv~~~~~~-~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH---~~~i~H~dl~p~nil~~~~~--~~~l~dfg~~~~  164 (311)
T cd07866          91 YMVTPYMDH-DLSGLLENPSVKLTESQIKCYMLQLLEGINYLH---ENHILHRDIKAANILIDNQG--ILKIADFGLARP  164 (311)
T ss_pred             EEEEecCCc-CHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCC--CEEECcCccchh
Confidence            999999985 6777664    4899999999999999999999   56899999999999999754  467888887653


Q ss_pred             cCC-----------------CCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHh
Q 002105          833 TDS-----------------KSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYC  894 (966)
Q Consensus       833 ~~~-----------------~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~  894 (966)
                      ...                 ...+++.|+|||+..+ ..++.++|||||||++|||++|++||.+.... ..........
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~-~~~~~~~~~~  243 (311)
T cd07866         165 YDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDI-DQLHLIFKLC  243 (311)
T ss_pred             ccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHh
Confidence            211                 1234677999998764 45889999999999999999999998754221 1111111000


Q ss_pred             hc--cCc------ccccccccccCCCc-chH----HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          895 YS--DCH------LDTWVDPFIRGHVS-SIQ----NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       895 ~~--~~~------~~~~~d~~~~~~~~-~~~----~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ..  ...      .....+.......+ ...    ....++.+++.+|++.||++|||+.|++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         244 GTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALE  307 (311)
T ss_pred             CCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence            00  000      00000000000000 000    11245778899999999999999998864

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.96  E-value=3.8e-28  Score=271.77  Aligned_cols=264  Identities=21%  Similarity=0.237  Sum_probs=183.6

Q ss_pred             ccCCCCCccEEEEEEEecC--CcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecC----CeeEEEE
Q 002105          689 TSRGKKGVSSSYKVRSLAN--DMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE----KAAYLVY  760 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~--~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~----~~~~lv~  760 (966)
                      ..+|+|++|.||+++....  +..||+|++....  ....+.+..|+..+.++..|||||++++++...    ...|++|
T Consensus         6 ~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~   85 (332)
T cd07857           6 KELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNELYLYE   85 (332)
T ss_pred             EEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcEEEEE
Confidence            3468899999999999777  8899999885421  122345677888887744699999999976432    4578999


Q ss_pred             EccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---
Q 002105          761 EYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       761 Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---  834 (966)
                      ||++ ++|.+++.   .+++.....++.||+.||+|||   ..+|+||||||+||+++.+.  .++++|||.+....   
T Consensus        86 e~~~-~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~givH~dlkp~Nili~~~~--~~kl~Dfg~a~~~~~~~  159 (332)
T cd07857          86 ELME-ADLHQIIRSGQPLTDAHFQSFIYQILCGLKYIH---SANVLHRDLKPGNLLVNADC--ELKICDFGLARGFSENP  159 (332)
T ss_pred             eccc-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHeEEcCCC--CEEeCcCCCceeccccc
Confidence            9987 68999885   4789999999999999999999   55899999999999998754  47889999875321   


Q ss_pred             -------CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhcc---------
Q 002105          835 -------SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD---------  897 (966)
Q Consensus       835 -------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~---------  897 (966)
                             ....|++.|+|||+..+ ..++.++|||||||++||+++|+.||..... .... +........         
T Consensus       160 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~-~~~~-~~~~~~~~~~~~~~~~~~  237 (332)
T cd07857         160 GENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDY-VDQL-NQILQVLGTPDEETLSRI  237 (332)
T ss_pred             ccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCH-HHHH-HHHHHHhCCCCHHHHHhh
Confidence                   12357889999998765 5689999999999999999999999865321 1111 110000000         


Q ss_pred             --C-------cccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHH---hhccCCcCCCCccC
Q 002105          898 --C-------HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK--TLES---CFRISSCVSGLKFS  963 (966)
Q Consensus       898 --~-------~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~--~L~~---~~~~~~~~~~~~~~  963 (966)
                        .       .......+.+....+   ..-.++.+++.+|++.+|++|||+.|++.  .+++   ....+-|++.+.|+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~l~~~P~~R~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  314 (332)
T cd07857         238 GSPKAQNYIRSLPNIPKKPFESIFP---NANPLALDLLEKLLAFDPTKRISVEEALEHPYLAIWHDPDDEPVCQKPFDFS  314 (332)
T ss_pred             hhhhHHHHHHhccccCCcchHhhCC---CCCHHHHHHHHHHccCCcccCCCHHHHhcChhhhhhcCccccccccccccCC
Confidence              0       000000000000000   01235677889999999999999999862  2333   11223466666665

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.96  E-value=2.5e-28  Score=266.60  Aligned_cols=248  Identities=23%  Similarity=0.316  Sum_probs=180.9

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ..+|.|++|.||++....++..||+|++....  ....+.+..|+..+.+ ++||||+++++++.+.+..++||||++ +
T Consensus         5 ~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~-~~~~~i~~~~~~~~~~~~~~~v~e~~~-~   82 (282)
T cd07829           5 EKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKE-LKHPNIVKLLDVIHTERKLYLVFEYCD-M   82 (282)
T ss_pred             hcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHh-cCCCCHHHHHhhhhcCCceEEEecCcC-c
Confidence            34688899999999998889999999986543  2223456778777777 699999999999999999999999998 5


Q ss_pred             CHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC------C
Q 002105          767 ELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS------K  836 (966)
Q Consensus       767 ~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~------~  836 (966)
                      +|.++++    .+++..+.+++.++++||+|||   ..+|+||||||+||+++++.  .++++++|.+.....      .
T Consensus        83 ~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~~l~~~ni~~~~~~--~~~l~d~g~~~~~~~~~~~~~~  157 (282)
T cd07829          83 DLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCH---SHRILHRDLKPQNILINRDG--VLKLADFGLARAFGIPLRTYTH  157 (282)
T ss_pred             CHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChheEEEcCCC--CEEEecCCcccccCCCccccCc
Confidence            9999985    4789999999999999999999   45899999999999999754  467888887654211      2


Q ss_pred             CcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccc--------cccc
Q 002105          837 SINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTW--------VDPF  907 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~d~~  907 (966)
                      ..++..|+|||.+.+. .++.++|||||||++||+++|+.||..+... +.. ..............|        .+..
T Consensus       158 ~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (282)
T cd07829         158 EVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEI-DQL-FKIFQILGTPTEESWPGVTKLPDYKPT  235 (282)
T ss_pred             cccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHH-HHH-HHHHHHhCCCcHHHHHhhccccccccc
Confidence            2346679999998766 7899999999999999999999998654211 111 111000000000000        0000


Q ss_pred             ccCCCcc-----hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          908 IRGHVSS-----IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       908 ~~~~~~~-----~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .......     .......+.+++.+|++.+|++||++.+|+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         236 FPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             ccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence            0000000     0011245778889999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=2.5e-28  Score=286.66  Aligned_cols=186  Identities=16%  Similarity=0.265  Sum_probs=142.8

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEE-E--------------e---ccCcccccchHHHHHHHHhhcCCCceeEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKK-I--------------I---DVNTITTSSFWPDVSQFGKLIMHPNIVRL  746 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~-~--------------~---~~~~~~~~~~~~e~~~~~~~~~H~niv~l  746 (966)
                      +..+..+|+|+||.||+++........++++ +              .   .........+.+|+..+.+ ++|||||++
T Consensus       150 Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~-l~HpnIv~l  228 (501)
T PHA03210        150 FRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGR-LNHENILKI  228 (501)
T ss_pred             cEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHh-CCCCCcCcE
Confidence            4556678999999999987643332222111 1              0   0011112346778877777 699999999


Q ss_pred             eeEEecCCeeEEEEEccCCCCHHHHHHc--C------CHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC
Q 002105          747 HGVCRSEKAAYLVYEYIEGKELSEVLRN--L------SWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD  818 (966)
Q Consensus       747 ~g~~~~~~~~~lv~Ey~~~g~L~~~l~~--l------~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~  818 (966)
                      ++++..++..|+||||+. ++|.+++..  +      .......++.|++.||+|||   +.+||||||||+|||++.+.
T Consensus       229 ~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH---~~gIiHrDLKP~NILl~~~~  304 (501)
T PHA03210        229 EEILRSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIH---DKKLIHRDIKLENIFLNCDG  304 (501)
T ss_pred             eEEEEECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCC
Confidence            999999999999999986 577777642  2      23456679999999999999   56899999999999998654


Q ss_pred             CceEEEeccccceecC-------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCC
Q 002105          819 EPHLRLSVPGLAYCTD-------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPA  877 (966)
Q Consensus       819 ~~~~~~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~  877 (966)
                        .++++|||++....       ....||+.|+|||++.+..++.++|||||||++|||++|+.++
T Consensus       305 --~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p  368 (501)
T PHA03210        305 --KIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCP  368 (501)
T ss_pred             --CEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCC
Confidence              57899999986422       1246899999999999999999999999999999999988643

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.96  E-value=2.3e-28  Score=274.76  Aligned_cols=254  Identities=19%  Similarity=0.287  Sum_probs=179.8

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecC------Cee
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE------KAA  756 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~------~~~  756 (966)
                      +.....+|+|++|.||++....++..||+|++....  ....+.+.+|+..+.+ ++|||||++++++...      +..
T Consensus        19 y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~-l~h~~iv~~~~~~~~~~~~~~~~~~   97 (345)
T cd07877          19 YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKH-MKHENVIGLLDVFTPARSLEEFNDV   97 (345)
T ss_pred             eEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHH-cCCCcccceeeeeeecccccccccE
Confidence            344556799999999999988899999999986432  1223456778877777 6999999999988643      346


Q ss_pred             EEEEEccCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          757 YLVYEYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       757 ~lv~Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      ++++||+ +++|.++++  .++|..+..++.|+++||+|||   +.+|+||||||+||+++.+.  .+++.|||++....
T Consensus        98 ~lv~~~~-~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~--~~kl~dfg~~~~~~  171 (345)
T cd07877          98 YLVTHLM-GADLNNIVKCQKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDC--ELKILDFGLARHTD  171 (345)
T ss_pred             EEEehhc-ccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChHHEEEcCCC--CEEEeccccccccc
Confidence            8888887 789998886  4899999999999999999999   55899999999999999765  47888999876533


Q ss_pred             C---CCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHh----------hccCcc
Q 002105          835 S---KSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYC----------YSDCHL  900 (966)
Q Consensus       835 ~---~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~----------~~~~~~  900 (966)
                      .   ...++..|+|||...+ ..++.++|||||||++|||++|+.||...... .......+..          +.....
T Consensus       172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (345)
T cd07877         172 DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHI-DQLKLILRLVGTPGAELLKKISSESA  250 (345)
T ss_pred             ccccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCCHHHHhhcccHhH
Confidence            2   2356888999998765 56889999999999999999999998643211 1110110000          000000


Q ss_pred             ccccc--ccccC-CCcc-hHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          901 DTWVD--PFIRG-HVSS-IQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       901 ~~~~d--~~~~~-~~~~-~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      ..+..  +.... .... ....-.++.+++.+|++.||.+||++.+++..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h  300 (345)
T cd07877         251 RNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  300 (345)
T ss_pred             HHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcC
Confidence            00000  00000 0000 00012346788899999999999999998743

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.96  E-value=4.3e-28  Score=293.42  Aligned_cols=127  Identities=21%  Similarity=0.317  Sum_probs=107.4

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc---ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ....+|.|+||.||+|+...++..||+|++.......   ...+..|+..+.. ++|||||++++++...+..|+||||+
T Consensus         8 i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~-l~hp~Iv~~~~~~~~~~~~~lVmEy~   86 (669)
T cd05610           8 IVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALAL-SKSPFIVHLYYSLQSANNVYLVMEYL   86 (669)
T ss_pred             EEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHh-cCCCCcCeEEEEEEECCEEEEEEeCC
Confidence            3455799999999999998889999999986433221   2345566666655 79999999999999999999999999


Q ss_pred             CCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC
Q 002105          764 EGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK  817 (966)
Q Consensus       764 ~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~  817 (966)
                      ++|+|.++++.   +++...+.++.||+.||+|||   ..+||||||||+|||++.+
T Consensus        87 ~g~~L~~li~~~~~l~~~~~~~i~~qil~aL~yLH---~~gIiHrDLKP~NILl~~~  140 (669)
T cd05610          87 IGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLH---RHGIIHRDLKPDNMLISNE  140 (669)
T ss_pred             CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCccHHHEEEcCC
Confidence            99999999863   788889999999999999999   4589999999999999864

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.96  E-value=1.9e-28  Score=275.26  Aligned_cols=255  Identities=22%  Similarity=0.329  Sum_probs=181.6

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCC------eeE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK------AAY  757 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~------~~~  757 (966)
                      .....+|+|++|.||++....++..||||++.....  .....+..|+..+.+ ++|||||++++++..+.      ..+
T Consensus        18 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~~~~~~   96 (343)
T cd07880          18 RDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKH-MKHENVIGLLDVFTPDLSLDRFHDFY   96 (343)
T ss_pred             EEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHh-cCCCCccceeeeecCCccccccceEE
Confidence            345567999999999999988999999998854221  122346678777776 69999999999987653      458


Q ss_pred             EEEEccCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC
Q 002105          758 LVYEYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS  835 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~  835 (966)
                      +||||+ +++|.+++.  .+++.....++.|+++||+|||   ..+|+||||||+||+++.+.  .+++.|||.+.....
T Consensus        97 lv~e~~-~~~l~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~gi~H~dlkp~Nill~~~~--~~kl~dfg~~~~~~~  170 (343)
T cd07880          97 LVMPFM-GTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIH---AAGIIHRDLKPGNLAVNEDC--ELKILDFGLARQTDS  170 (343)
T ss_pred             EEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCC--CEEEeeccccccccc
Confidence            999999 689998885  5899999999999999999999   56899999999999998654  578899998764322


Q ss_pred             ---CCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHH-----------HHHhhccCcc
Q 002105          836 ---KSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEW-----------ARYCYSDCHL  900 (966)
Q Consensus       836 ---~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~-----------~~~~~~~~~~  900 (966)
                         ...+++.|+|||.+.+ ..++.++||||+||++||+++|+.||...... ....+.           ...... ...
T Consensus       171 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~  248 (343)
T cd07880         171 EMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHL-DQLMEIMKVTGTPSKEFVQKLQS-EDA  248 (343)
T ss_pred             CccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHhcCCCCHHHHHhhcc-hhH
Confidence               2356889999998865 45889999999999999999999998753211 111010           000000 000


Q ss_pred             ccccc--cccc-CCCcch-HHHHHHHHHHHHHccCCCCCCCCCHHHHH--HHHHH
Q 002105          901 DTWVD--PFIR-GHVSSI-QNEIVEIMNLALHCTAGDPTARPCASDVT--KTLES  949 (966)
Q Consensus       901 ~~~~d--~~~~-~~~~~~-~~~~~~~~~l~~~C~~~~P~~RPt~~~v~--~~L~~  949 (966)
                      .....  |... ...... .....++.+++.+|++.||++|||+.+++  ..++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~~~~~~  303 (343)
T cd07880         249 KNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALAHPYFEE  303 (343)
T ss_pred             HHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhcCccHhh
Confidence            00000  0000 000000 01112466788899999999999999998  44544

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.7e-28  Score=262.92  Aligned_cols=228  Identities=29%  Similarity=0.375  Sum_probs=178.5

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCcc---cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI---TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~---~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      +|.|++|.||++....++..+|+|.+......   ....+..|+..+.+ ++||||+++++++..++..++||||+++++
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~   79 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSR-INHPFIVKLHYAFQTEEKLYLVLEYAPGGE   79 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHH-cCCCcHHHHHHHeecCCeeEEEEecCCCCc
Confidence            47899999999999778999999987654322   22356777776666 799999999999999999999999999999


Q ss_pred             HHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC------CCc
Q 002105          768 LSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS------KSI  838 (966)
Q Consensus       768 L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~------~~~  838 (966)
                      |.+++..   +++.....++.|+++|+.|+|   ..+++|+||||+||+++.+.  .++++++|.+.....      ...
T Consensus        80 L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh---~~~~~H~~l~p~ni~~~~~~--~~~l~d~~~~~~~~~~~~~~~~~~  154 (250)
T cd05123          80 LFSHLSKEGRFSEERARFYAAEIVLALEYLH---SLGIIYRDLKPENILLDADG--HIKLTDFGLAKELSSEGSRTNTFC  154 (250)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcceEEEcCCC--cEEEeecCcceecccCCCcccCCc
Confidence            9999863   789999999999999999999   56899999999999998754  467889988754322      235


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      ++..|+|||...+...+.++|+||||+++||+++|+.||....  .....+.+.   .. .      ..+....      
T Consensus       155 ~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~--~~~~~~~~~---~~-~------~~~~~~~------  216 (250)
T cd05123         155 GTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAED--RKEIYEKIL---KD-P------LRFPEFL------  216 (250)
T ss_pred             CCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCC--HHHHHHHHh---cC-C------CCCCCCC------
Confidence            6789999999988888999999999999999999999986432  111111111   10 0      0011111      


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASD  942 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~  942 (966)
                      ..++.+++.+|+..||++||++++
T Consensus       217 ~~~l~~~i~~~l~~~p~~R~~~~~  240 (250)
T cd05123         217 SPEARDLISGLLQKDPTKRLGSGG  240 (250)
T ss_pred             CHHHHHHHHHHhcCCHhhCCCccc
Confidence            134567788999999999999965

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.96  E-value=2.4e-28  Score=277.29  Aligned_cols=237  Identities=18%  Similarity=0.261  Sum_probs=183.5

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEec-----CCeeEEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS-----EKAAYLVYE  761 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~-----~~~~~lv~E  761 (966)
                      .+..+|.|-+|.|||++.+++|+.+|||.+... ...+++...|...+.....|||++.+||+|..     ++.+|||||
T Consensus        23 i~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~-~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~DqLWLVME  101 (953)
T KOG0587|consen   23 IIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPT-EDEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQLWLVME  101 (953)
T ss_pred             EEEEEeeccceeEEEEeeeecCceeeeEeecCC-ccccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCeEEEEee
Confidence            344567777777999999999998888876443 33344556666777777789999999999864     578999999


Q ss_pred             ccCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-
Q 002105          762 YIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-  835 (966)
Q Consensus       762 y~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-  835 (966)
                      ||.+|+..+.+++     +.|....-|+..+++|+.+||   ...+||||||-.|||++.  ++.||+.|||++...+. 
T Consensus       102 fC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH---~nkviHRDikG~NiLLT~--e~~VKLvDFGvSaQldsT  176 (953)
T KOG0587|consen  102 FCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLH---NNKVIHRDIKGQNVLLTE--NAEVKLVDFGVSAQLDST  176 (953)
T ss_pred             ccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHh---hcceeeecccCceEEEec--cCcEEEeeeeeeeeeecc
Confidence            9999999999873     788888889999999999999   558999999999999995  46689999999876443 


Q ss_pred             -----CCcCCcccccccccCC-----CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccc
Q 002105          836 -----KSINSSAYVAPETKES-----KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVD  905 (966)
Q Consensus       836 -----~~~~~~~y~aPE~~~~-----~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  905 (966)
                           ..+|||.|||||++..     ..|+.++|+||+|++..||.-|.+|+.....        ++..+..   ..-..
T Consensus       177 ~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHP--------mraLF~I---pRNPP  245 (953)
T KOG0587|consen  177 VGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHP--------MRALFLI---PRNPP  245 (953)
T ss_pred             cccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcch--------hhhhccC---CCCCC
Confidence                 3579999999998764     3478899999999999999999999743211        1111110   00022


Q ss_pred             ccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 002105          906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVT  944 (966)
Q Consensus       906 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~  944 (966)
                      |.+    ........++.+.+..|+.+|-++||++.+.+
T Consensus       246 PkL----krp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll  280 (953)
T KOG0587|consen  246 PKL----KRPKKWSKKFNDFISTCLVKDYEQRPSTEELL  280 (953)
T ss_pred             ccc----cchhhHHHHHHHHHHHHHhhccccCcchhhhc
Confidence            222    22355667788888999999999999998775

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.96  E-value=1.3e-28  Score=268.61  Aligned_cols=233  Identities=21%  Similarity=0.294  Sum_probs=179.7

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcC-CCceeEEeeEEecCCeeEEEEEcc
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIM-HPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~-H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ...+|.|++|.||++....++..||+|.+....   ....+.+..|...+.+ ++ ||||+++++++..++..++||||+
T Consensus         6 ~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~-l~~~~~i~~~~~~~~~~~~~~lv~e~~   84 (280)
T cd05581           6 GKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTR-LNGHPGIIKLYYTFQDEENLYFVLEYA   84 (280)
T ss_pred             eeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHh-cccCCCchhHHHHhcCCceEEEEEcCC
Confidence            345689999999999998899999999875422   1223456677777767 57 999999999999999999999999


Q ss_pred             CCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-----
Q 002105          764 EGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----  835 (966)
Q Consensus       764 ~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-----  835 (966)
                      ++|+|.++++.   ++|.....++.|++.||+|||   ..+++|+||||+||+++.+.  .+++.|||.+.....     
T Consensus        85 ~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~~Lh---~~~~~H~dl~~~ni~i~~~~--~~~l~df~~~~~~~~~~~~~  159 (280)
T cd05581          85 PNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLH---SKGIIHRDLKPENILLDKDM--HIKITDFGTAKVLDPNSSPE  159 (280)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCC--CEEecCCccccccCCccccc
Confidence            99999999963   799999999999999999999   45899999999999998654  468889887653211     


Q ss_pred             ---------------------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHh
Q 002105          836 ---------------------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYC  894 (966)
Q Consensus       836 ---------------------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~  894 (966)
                                           ...++..|+|||+.....++.++||||||++++|+++|+.|+.....  ....+...  
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~~~~~~~--  235 (280)
T cd05581         160 SNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNE--YLTFQKIL--  235 (280)
T ss_pred             cCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccH--HHHHHHHH--
Confidence                                 12357789999999888899999999999999999999999875321  11111111  


Q ss_pred             hccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCH----HHHH
Q 002105          895 YSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCA----SDVT  944 (966)
Q Consensus       895 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~----~~v~  944 (966)
                       . .   .   ..+....      ..++.+++.+|++.+|.+||++    +|++
T Consensus       236 -~-~---~---~~~~~~~------~~~~~~li~~~l~~~p~~R~~~~~~~~~ll  275 (280)
T cd05581         236 -K-L---E---YSFPPNF------PPDAKDLIEKLLVLDPQDRLGVNEGYDELK  275 (280)
T ss_pred             -h-c---C---CCCCCcc------CHHHHHHHHHHhcCCHhhCCCcccCHHHHh
Confidence             0 0   0   0011111      2356778889999999999999    5554

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.96  E-value=4.5e-29  Score=263.18  Aligned_cols=186  Identities=24%  Similarity=0.333  Sum_probs=158.9

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ...+|+||||+||-++...+|+.+|.|++.+..   .....-...|-..+.+ +..|-||.+--.|++++.+++||..|.
T Consensus       190 ~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~k-V~s~FiVslaYAfeTkd~LClVLtlMN  268 (591)
T KOG0986|consen  190 YRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEK-VSSPFIVSLAYAFETKDALCLVLTLMN  268 (591)
T ss_pred             eEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHH-hccCcEEEEeeeecCCCceEEEEEeec
Confidence            345799999999999999999999999985432   1222233455555555 789999999999999999999999999


Q ss_pred             CCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          765 GKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       765 ~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      ||||.-+|.+     ++....+-+|.+|+-||++||   ...||.||+||+|||||+.  .+++++|.|++....     
T Consensus       269 GGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH---~~~iVYRDLKPeNILLDd~--GhvRISDLGLAvei~~g~~~  343 (591)
T KOG0986|consen  269 GGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLH---RRRIVYRDLKPENILLDDH--GHVRISDLGLAVEIPEGKPI  343 (591)
T ss_pred             CCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHH---hcceeeccCChhheeeccC--CCeEeeccceEEecCCCCcc
Confidence            9999988863     788888899999999999999   6699999999999999965  568899999987532     


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCC
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADA  879 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~  879 (966)
                      ...+||.||||||++..+.|+...|-||+||++|||+.|+.||..
T Consensus       344 ~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~  388 (591)
T KOG0986|consen  344 RGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQ  388 (591)
T ss_pred             ccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhh
Confidence            234899999999999999999999999999999999999999964

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=3.5e-29  Score=260.02  Aligned_cols=200  Identities=23%  Similarity=0.321  Sum_probs=168.1

Q ss_pred             HHHHHhhccccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccc---hHHHHHHHHhhcCCCceeEEeeEEec
Q 002105          676 IDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSS---FWPDVSQFGKLIMHPNIVRLHGVCRS  752 (966)
Q Consensus       676 ~~~~~~~~~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~---~~~e~~~~~~~~~H~niv~l~g~~~~  752 (966)
                      -.+.+++++...+..+|+|+||.|..+....++..+|||.+.+..-+...+   -+.|-+.++---+-|-+|+++.++++
T Consensus       342 ~~d~i~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQT  421 (683)
T KOG0696|consen  342 KRDRIKATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQT  421 (683)
T ss_pred             cccceeecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhh
Confidence            345678888888999999999999999998888999999886543222222   12333333222368899999999999


Q ss_pred             CCeeEEEEEccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccc
Q 002105          753 EKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL  829 (966)
Q Consensus       753 ~~~~~lv~Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~  829 (966)
                      .+.+|.||||+.||+|--++++   +.+....-+|..||-||-|||   +.+||.||+|-.||+||.  +.++|+.|||+
T Consensus       422 mDRLyFVMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh---~kgIiYRDLKLDNvmLd~--eGHiKi~DFGm  496 (683)
T KOG0696|consen  422 MDRLYFVMEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDS--EGHIKIADFGM  496 (683)
T ss_pred             hhheeeEEEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhhh---cCCeeeeeccccceEecc--CCceEeeeccc
Confidence            9999999999999999988874   677888899999999999999   779999999999999995  56899999998


Q ss_pred             cee------cCCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          830 AYC------TDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       830 ~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                      ...      +....+|||-|||||++...+|+..+|-|||||+||||+.|++||+++
T Consensus       497 cKEni~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGe  553 (683)
T KOG0696|consen  497 CKENIFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE  553 (683)
T ss_pred             ccccccCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCC
Confidence            764      334568999999999999999999999999999999999999999875

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.95  E-value=3.4e-28  Score=273.33  Aligned_cols=252  Identities=19%  Similarity=0.293  Sum_probs=180.2

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCe------eE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKA------AY  757 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~------~~  757 (966)
                      .....+|.|++|.||+|+...++..||||++....  ......+.+|+..+.+ ++||||+++++++..++.      .+
T Consensus        18 ~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~~~~~~   96 (343)
T cd07851          18 QNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKH-MDHENVIGLLDVFTPASSLEDFQDVY   96 (343)
T ss_pred             EEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHh-ccCCCHHHHHHHhhccccccccccEE
Confidence            34456788999999999998889999999875421  1223446678877777 699999999998876554      89


Q ss_pred             EEEEccCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-
Q 002105          758 LVYEYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-  834 (966)
                      +|+||+ +++|.+++.  .+++.....++.|+++||+|||   ..+|+||||||+||+++.+.  .+++.|||.+.... 
T Consensus        97 lv~e~~-~~~L~~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~gi~H~dlkp~Nill~~~~--~~kL~dfg~~~~~~~  170 (343)
T cd07851          97 LVTHLM-GADLNNIVKCQKLSDDHIQFLVYQILRGLKYIH---SAGIIHRDLKPSNIAVNEDC--ELKILDFGLARHTDD  170 (343)
T ss_pred             EEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCC--CEEEccccccccccc
Confidence            999999 579999886  4899999999999999999999   56899999999999999754  47889999876532 


Q ss_pred             --CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHh----------hccCccc
Q 002105          835 --SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYC----------YSDCHLD  901 (966)
Q Consensus       835 --~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~----------~~~~~~~  901 (966)
                        ....++..|+|||...+ ..++.++|||||||++||++||+.||..... .+.+.......          +......
T Consensus       171 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~  249 (343)
T cd07851         171 EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDH-IDQLKRIMNLVGTPDEELLQKISSESAR  249 (343)
T ss_pred             cccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCh-HHHHHHHHHhcCCCCHHHHhhccchhHH
Confidence              23356788999998765 3678999999999999999999999865321 11111100000          0000000


Q ss_pred             ccccccccCCCcchH----HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          902 TWVDPFIRGHVSSIQ----NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       902 ~~~d~~~~~~~~~~~----~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .++............    ....++.+++.+|++.+|++|||+.||+.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~  297 (343)
T cd07851         250 NYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALA  297 (343)
T ss_pred             HHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhc
Confidence            000000000000000    11245778899999999999999999875

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.95  E-value=1.2e-28  Score=234.93  Aligned_cols=194  Identities=20%  Similarity=0.322  Sum_probs=159.2

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEecc-CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV-NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~-~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ..+..+|+|++|.|-|.++..+|...|||++... ..+..+....|+...++....|.+|.+||.+..+...+|.||.|+
T Consensus        49 ~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME~M~  128 (282)
T KOG0984|consen   49 VGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICMELMD  128 (282)
T ss_pred             hhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHHHhh
Confidence            4455678998998989999999999999999654 444556678888888887789999999999999999999999997


Q ss_pred             CCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC--
Q 002105          765 GKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--  835 (966)
Q Consensus       765 ~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~--  835 (966)
                       -||+.+-+       ..++...=+||..|..||.|||+.  ..|||||+||+|||++.+  .++|++|||++.....  
T Consensus       129 -tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~k--L~vIHRDvKPsNiLIn~~--GqVKiCDFGIsG~L~dSi  203 (282)
T KOG0984|consen  129 -TSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSK--LSVIHRDVKPSNILINYD--GQVKICDFGISGYLVDSI  203 (282)
T ss_pred             -hhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHH--hhhhhccCCcceEEEccC--CcEEEcccccceeehhhh
Confidence             57776543       266777779999999999999974  589999999999999954  5689999998754322  


Q ss_pred             ---CCcCCcccccccccCC----CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCch
Q 002105          836 ---KSINSSAYVAPETKES----KDITEKGDIYGFGLILIDLLTGKSPADADFGVH  884 (966)
Q Consensus       836 ---~~~~~~~y~aPE~~~~----~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~  884 (966)
                         ...|.-.|||||.+..    ..|+.|+||||+|+.+.||++++.||+.-....
T Consensus       204 Akt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w~tpF  259 (282)
T KOG0984|consen  204 AKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESWGTPF  259 (282)
T ss_pred             HHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccccCCHH
Confidence               2356678999998653    479999999999999999999999997544333

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1.5e-28  Score=257.11  Aligned_cols=243  Identities=22%  Similarity=0.328  Sum_probs=174.1

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc---cccch----HHHHHHHHhhcCCCceeEEeeEEec-CCeeEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI---TTSSF----WPDVSQFGKLIMHPNIVRLHGVCRS-EKAAYLV  759 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~---~~~~~----~~e~~~~~~~~~H~niv~l~g~~~~-~~~~~lv  759 (966)
                      +.-.|+|||+.||||-++...+.||||.-.-....   ..+.+    .+| ..+.+-+.||.||++|+|+.- .+..+-|
T Consensus       468 LhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcRE-yrIHKeLDHpRIVKlYDyfslDtdsFCTV  546 (775)
T KOG1151|consen  468 LHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACRE-YRIHKELDHPRIVKLYDYFSLDTDSFCTV  546 (775)
T ss_pred             HHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHH-HhhhhccCcceeeeeeeeeeeccccceee
Confidence            34469999999999999888888888754211111   11112    233 344555899999999999975 4567889


Q ss_pred             EEccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEc-CCCCceEEEeccccceecC-
Q 002105          760 YEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVD-GKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~-~~~~~~~~~~~~~~~~~~~-  834 (966)
                      .|||+|.+|+-||+.   ++..+.+.|+.||..||.||.+. .++|||-|+||.|||+- +.....+|+.|||+....+ 
T Consensus       547 LEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdd  625 (775)
T KOG1151|consen  547 LEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDD  625 (775)
T ss_pred             eeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEeeecchhhhccC
Confidence            999999999999974   78889999999999999999976 89999999999999884 4455678999999986532 


Q ss_pred             ------------CCCcCCcccccccccCC----CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccC
Q 002105          835 ------------SKSINSSAYVAPETKES----KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDC  898 (966)
Q Consensus       835 ------------~~~~~~~~y~aPE~~~~----~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  898 (966)
                                  +...||..|++||.+.-    .+.+.|+||||.|||+|+.+.|+.||..+....+++ +.-. .+ . 
T Consensus       626 dSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQdIL-qeNT-Il-k-  701 (775)
T KOG1151|consen  626 DSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQDIL-QENT-IL-K-  701 (775)
T ss_pred             CccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHHHHH-hhhc-hh-c-
Confidence                        23578999999998653    357889999999999999999999997654333322 1100 00 0 


Q ss_pred             cccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 002105          899 HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVT  944 (966)
Q Consensus       899 ~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~  944 (966)
                      ..+..+.|.  +..   ..   +....+.+|+++.-++|-...+++
T Consensus       702 AtEVqFP~K--PvV---ss---eAkaFIRRCLaYRKeDR~DV~qLA  739 (775)
T KOG1151|consen  702 ATEVQFPPK--PVV---SS---EAKAFIRRCLAYRKEDRIDVQQLA  739 (775)
T ss_pred             ceeccCCCC--Ccc---CH---HHHHHHHHHHHhhhhhhhhHHHHc
Confidence            011111111  111   12   233456689988888887766654

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.95  E-value=1.5e-27  Score=253.61  Aligned_cols=231  Identities=28%  Similarity=0.386  Sum_probs=182.3

Q ss_pred             CccEEEEEEEecCCcEEEEEEEeccCccc-ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCHHHHHH
Q 002105          695 GVSSSYKVRSLANDMQFVVKKIIDVNTIT-TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR  773 (966)
Q Consensus       695 g~~~vy~~~~~~~~~~vavk~~~~~~~~~-~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L~~~l~  773 (966)
                      |+|.||++....+|..+|+|++....... .+.+.+|+..+.+ ++|+||+++++++..+...++||||+++++|.+++.
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~-l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~   79 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKK-LKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLK   79 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHh-CCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHH
Confidence            56789999997789999999986554433 5678888888877 599999999999999999999999999999999986


Q ss_pred             c---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----CCCcCCccccc
Q 002105          774 N---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SKSINSSAYVA  845 (966)
Q Consensus       774 ~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~y~a  845 (966)
                      .   +++..+..++.++++|++|||   ..+++|+||+|+||+++++  ..+++.|+|.+....     ....++..|+|
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~~i~~~ni~~~~~--~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~  154 (244)
T smart00220       80 KRGRLSEDEARFYARQILSALEYLH---SNGIIHRDLKPENILLDED--GHVKLADFGLARQLDPGGLLTTFVGTPEYMA  154 (244)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHH---HcCeecCCcCHHHeEECCC--CcEEEccccceeeeccccccccccCCcCCCC
Confidence            4   789999999999999999999   4599999999999999976  457888998876532     23457889999


Q ss_pred             ccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHH
Q 002105          846 PETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNL  925 (966)
Q Consensus       846 PE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l  925 (966)
                      ||...+..++.++||||||+++||+++|+.|+.... ..+...++...    ..... . +    ..   .....++.++
T Consensus       155 pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~-~~~~~~~~~~~----~~~~~-~-~----~~---~~~~~~~~~~  220 (244)
T smart00220      155 PEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDD-QLLELFKKIGK----PKPPF-P-P----PE---WKISPEAKDL  220 (244)
T ss_pred             HHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-cHHHHHHHHhc----cCCCC-c-c----cc---ccCCHHHHHH
Confidence            999988889999999999999999999999986521 12222222211    00000 0 0    00   0012356778


Q ss_pred             HHHccCCCCCCCCCHHHHHH
Q 002105          926 ALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       926 ~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +.+|+..+|++||++.++++
T Consensus       221 i~~~l~~~p~~Rp~~~~~~~  240 (244)
T smart00220      221 IRKLLVKDPEKRLTAEEALQ  240 (244)
T ss_pred             HHHHccCCchhccCHHHHhh
Confidence            88999999999999999986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.95  E-value=2.2e-28  Score=260.98  Aligned_cols=194  Identities=24%  Similarity=0.373  Sum_probs=163.1

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ..|.|.||.||-|.+.++|+.||||.+.+..-  ..++...+|++.+.+ ++||.||.+-..|++.+.+|.|||-+.|.-
T Consensus       571 vLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~-l~HPGiV~le~M~ET~ervFVVMEKl~GDM  649 (888)
T KOG4236|consen  571 VLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQN-LHHPGIVNLECMFETPERVFVVMEKLHGDM  649 (888)
T ss_pred             hccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHh-cCCCCeeEEEEeecCCceEEEEehhhcchH
Confidence            45888888899999999999999999865432  234567888888888 699999999999999999999999998544


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC-CCceEEEeccccceecC-----CCC
Q 002105          768 LSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK-DEPHLRLSVPGLAYCTD-----SKS  837 (966)
Q Consensus       768 L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~-~~~~~~~~~~~~~~~~~-----~~~  837 (966)
                      |+-.|.    +++.....-+..||..||+|||   -.+|+|+|+||+|||+.+. .-+.+|++|||+++...     ..+
T Consensus       650 LEMILSsEkgRL~er~TkFlvtQIL~ALr~LH---~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksFRrsV  726 (888)
T KOG4236|consen  650 LEMILSSEKGRLPERITKFLVTQILVALRYLH---FKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSFRRSV  726 (888)
T ss_pred             HHHHHHhhcccchHHHHHHHHHHHHHHHHHhh---hcceeeccCCchheeeccCCCCCceeeccccceeecchhhhhhhh
Confidence            444443    4777777788999999999999   4599999999999999653 45789999999998643     346


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESI  887 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~  887 (966)
                      +|||+|.|||++..+.|...-|+||.|||+|--++|..||..+.+..+.+
T Consensus       727 VGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdIndQI  776 (888)
T KOG4236|consen  727 VGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDINDQI  776 (888)
T ss_pred             cCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccchhHHh
Confidence            89999999999999999999999999999999999999998764444433

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.95  E-value=8.3e-28  Score=242.19  Aligned_cols=190  Identities=23%  Similarity=0.374  Sum_probs=153.7

Q ss_pred             ccccccCCCCCccEEEEEEEecCC----cEEEEEEEeccCccc--ccchHHHHHHHHhhcCCCceeEEeeEEec-CCeeE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLAND----MQFVVKKIIDVNTIT--TSSFWPDVSQFGKLIMHPNIVRLHGVCRS-EKAAY  757 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~----~~vavk~~~~~~~~~--~~~~~~e~~~~~~~~~H~niv~l~g~~~~-~~~~~  757 (966)
                      ++.+..+|+|.+|.||||....+.    +.+|+|++......+  .....+|+..+.. ++|||||.+..++.+ +..++
T Consensus        26 ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~RE-l~h~nvi~Lv~Vfl~~d~~v~  104 (438)
T KOG0666|consen   26 YEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRE-LKHPNVISLVKVFLSHDKKVW  104 (438)
T ss_pred             hhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHH-hcCCcchhHHHHHhccCceEE
Confidence            455666899999999999654332    378999987543322  3345678877766 799999999999987 78899


Q ss_pred             EEEEccCCCCHHHHHH--------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC--CCceEEEecc
Q 002105          758 LVYEYIEGKELSEVLR--------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK--DEPHLRLSVP  827 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~--------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~--~~~~~~~~~~  827 (966)
                      +++||.|. ||.+.|+        .++-.....|..||..|+.|||   +.-|+|||+||+|||+..+  ...+||++|+
T Consensus       105 l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH---~NWvlHRDLKPaNIlvmgdgperG~VKIaDl  180 (438)
T KOG0666|consen  105 LLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLH---SNWVLHRDLKPANILVMGDGPERGRVKIADL  180 (438)
T ss_pred             EEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHh---hhheeeccCCcceEEEeccCCccCeeEeecc
Confidence            99999995 8888885        3677788899999999999999   5579999999999999755  3467899999


Q ss_pred             cccee---------cCCCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCC
Q 002105          828 GLAYC---------TDSKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADA  879 (966)
Q Consensus       828 ~~~~~---------~~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~  879 (966)
                      |+++.         ....++-|..|.|||.+.+ ..||.+.||||.|||+.||+|-++-|.+
T Consensus       181 GlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g  242 (438)
T KOG0666|consen  181 GLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKG  242 (438)
T ss_pred             cHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccc
Confidence            99864         2344567889999998765 5689999999999999999998877754

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1.5e-28  Score=285.03  Aligned_cols=193  Identities=23%  Similarity=0.348  Sum_probs=164.1

Q ss_pred             ccccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          683 TTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       683 ~~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      .+.+.+..+|+|+||.|..+++..++..+|.|++.+..  .....+|+.|++-++.....+-||+++-.|++++++|+||
T Consensus        75 ~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~~LYlVM  154 (1317)
T KOG0612|consen   75 EDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDERYLYLVM  154 (1317)
T ss_pred             HhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCccceEEEE
Confidence            44567778999999999999999999999999986632  2334567777777766567888999999999999999999


Q ss_pred             EccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----
Q 002105          761 EYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----  833 (966)
Q Consensus       761 Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----  833 (966)
                      |||+||||-..+.+   ++....+-++..|.-||.-+|   +.|.|||||||+|||||.  .+++++.|||.+...    
T Consensus       155 dY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH---~mgyVHRDiKPDNvLld~--~GHikLADFGsClkm~~dG  229 (1317)
T KOG0612|consen  155 DYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLH---SMGYVHRDIKPDNVLLDK--SGHIKLADFGSCLKMDADG  229 (1317)
T ss_pred             ecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHH---hccceeccCCcceeEecc--cCcEeeccchhHHhcCCCC
Confidence            99999999999864   667777788889999999999   679999999999999994  568999999976432    


Q ss_pred             ---CCCCcCCcccccccccC----C-CCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          834 ---DSKSINSSAYVAPETKE----S-KDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       834 ---~~~~~~~~~y~aPE~~~----~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                         ....+|||-|++||+++    + +.|+..+|-||+||++|||+.|..||+++
T Consensus       230 ~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYad  284 (1317)
T KOG0612|consen  230 TVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYAD  284 (1317)
T ss_pred             cEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHH
Confidence               23458999999999864    3 57899999999999999999999999865

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=8.9e-28  Score=242.80  Aligned_cols=189  Identities=23%  Similarity=0.333  Sum_probs=161.4

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccc---hHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSS---FWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~---~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      +.+...|+|.||.|..++.+.+|+.+|+|.+.+..-...++   -..|-+.+.. .+||-+..+--.++..+.+++||||
T Consensus       171 dfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~-~~HPFLt~LKYsFQt~drlCFVMey  249 (516)
T KOG0690|consen  171 DFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQN-CRHPFLTSLKYSFQTQDRLCFVMEY  249 (516)
T ss_pred             hHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHh-ccCcHHHHhhhhhccCceEEEEEEE
Confidence            55677899999999999999999999999876543333222   2344445555 7999999998889999999999999


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee------c
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------T  833 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~------~  833 (966)
                      +.||.|.-+|.   .++....+-+-..|..||.|||   +.+||.||+|-+|.|+|.+  .++|+.|||+...      +
T Consensus       250 anGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLH---s~~ivYRDlKLENLlLDkD--GHIKitDFGLCKE~I~~g~t  324 (516)
T KOG0690|consen  250 ANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLH---SRNIVYRDLKLENLLLDKD--GHIKITDFGLCKEEIKYGDT  324 (516)
T ss_pred             ccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhh---hCCeeeeechhhhheeccC--CceEeeecccchhcccccce
Confidence            99999998885   3777777788999999999999   5699999999999999965  5789999999764      3


Q ss_pred             CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          834 DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       834 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                      ....+|||.|.|||++....|+.++|-|.+|||+|||++|+.||...
T Consensus       325 ~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~  371 (516)
T KOG0690|consen  325 TKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNK  371 (516)
T ss_pred             eccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCccccc
Confidence            45679999999999999999999999999999999999999999753

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.94  E-value=4.7e-27  Score=277.05  Aligned_cols=245  Identities=19%  Similarity=0.251  Sum_probs=156.2

Q ss_pred             cccccCCCCCccEEEEEEEecC----CcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeE------EecCCe
Q 002105          686 ENLTSRGKKGVSSSYKVRSLAN----DMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV------CRSEKA  755 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~----~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~------~~~~~~  755 (966)
                      .....+|+|+||.||+|+...+    +..||||++.....   .+.+.+. .+.+ ..|.+++.+...      +..++.
T Consensus       135 ~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~---~e~~~~e-~l~~-~~~~~~~~~~~~~~~~~~~~~~~~  209 (566)
T PLN03225        135 VLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA---VEIWMNE-RVRR-ACPNSCADFVYGFLEPVSSKKEDE  209 (566)
T ss_pred             EEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch---hHHHHHH-HHHh-hchhhHHHHHHhhhcccccccCCc
Confidence            4455689999999999999877    89999998753221   1111111 1222 123333333221      245678


Q ss_pred             eEEEEEccCCCCHHHHHHcCC-----------------------HHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcE
Q 002105          756 AYLVYEYIEGKELSEVLRNLS-----------------------WERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKV  812 (966)
Q Consensus       756 ~~lv~Ey~~~g~L~~~l~~l~-----------------------~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Ni  812 (966)
                      .++||||+++|+|.++++...                       +.....++.|++.||+|||   +.+|+||||||+||
T Consensus       210 ~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH---~~gIiHRDLKP~NI  286 (566)
T PLN03225        210 YWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLH---STGIVHRDVKPQNI  286 (566)
T ss_pred             eEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHH---HCCEEeCcCCHHHE
Confidence            999999999999999886311                       1223468999999999999   56899999999999


Q ss_pred             EEcCCCCceEEEeccccceecC-------CCCcCCcccccccccCCC----------------------CCCCcchHHHH
Q 002105          813 IVDGKDEPHLRLSVPGLAYCTD-------SKSINSSAYVAPETKESK----------------------DITEKGDIYGF  863 (966)
Q Consensus       813 ll~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~----------------------~~~~~~Dv~S~  863 (966)
                      |++.+ ...++++|||++....       ....+++.|||||.+...                      .++.++|||||
T Consensus       287 Ll~~~-~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSl  365 (566)
T PLN03225        287 IFSEG-SGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSA  365 (566)
T ss_pred             EEeCC-CCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccHHH
Confidence            99853 2457999999986421       234678999999964321                      24557799999


Q ss_pred             HHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhc-cCccccc---ccccc----cCCCcchHHHHHHHHHHHHHccCCCCC
Q 002105          864 GLILIDLLTGKSPADADFGVHESIVEWARYCYS-DCHLDTW---VDPFI----RGHVSSIQNEIVEIMNLALHCTAGDPT  935 (966)
Q Consensus       864 Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~d~~~----~~~~~~~~~~~~~~~~l~~~C~~~~P~  935 (966)
                      ||++|||+++..|++...      ..+.+.... +.....|   .++..    ...............+++.+|++.||+
T Consensus       366 GviL~el~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~  439 (566)
T PLN03225        366 GLIFLQMAFPNLRSDSNL------IQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFKGR  439 (566)
T ss_pred             HHHHHHHHhCcCCCchHH------HHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHccCCcc
Confidence            999999999877654321      011110000 0000011   11110    000000000112344788899999999


Q ss_pred             CCCCHHHHHH
Q 002105          936 ARPCASDVTK  945 (966)
Q Consensus       936 ~RPt~~~v~~  945 (966)
                      +|||++|+++
T Consensus       440 kR~ta~e~L~  449 (566)
T PLN03225        440 QRISAKAALA  449 (566)
T ss_pred             cCCCHHHHhC
Confidence            9999999876

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.93  E-value=1.6e-25  Score=257.11  Aligned_cols=187  Identities=17%  Similarity=0.214  Sum_probs=138.0

Q ss_pred             cccccCCCCCccEEEEEEEe----------------cCCcEEEEEEEeccCcccc--------------cchHHHHHHHH
Q 002105          686 ENLTSRGKKGVSSSYKVRSL----------------ANDMQFVVKKIIDVNTITT--------------SSFWPDVSQFG  735 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~----------------~~~~~vavk~~~~~~~~~~--------------~~~~~e~~~~~  735 (966)
                      .....+|+||||.||+|...                ..++.||||++........              +.+..|+..+.
T Consensus       148 ~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~~~l~  227 (507)
T PLN03224        148 QLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEAYMCA  227 (507)
T ss_pred             eEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHHHHHH
Confidence            44556799999999999742                3456799999864332222              23344666666


Q ss_pred             hhcCCCce-----eEEeeEEec--------CCeeEEEEEccCCCCHHHHHHc---------------------------C
Q 002105          736 KLIMHPNI-----VRLHGVCRS--------EKAAYLVYEYIEGKELSEVLRN---------------------------L  775 (966)
Q Consensus       736 ~~~~H~ni-----v~l~g~~~~--------~~~~~lv~Ey~~~g~L~~~l~~---------------------------l  775 (966)
                      + ++|.++     ++++|+|..        ++..++||||+++|+|.++++.                           +
T Consensus       228 ~-l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~  306 (507)
T PLN03224        228 K-IKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKR  306 (507)
T ss_pred             H-hhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccC
Confidence            6 455544     788888764        3568999999999999998852                           3


Q ss_pred             CHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-------CCcCCcccccccc
Q 002105          776 SWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-------KSINSSAYVAPET  848 (966)
Q Consensus       776 ~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~y~aPE~  848 (966)
                      +|.....++.|++.||+|||   ..+|+||||||+||+++.+.  .+++.|||++.....       ...+++.|+|||.
T Consensus       307 ~~~~~~~i~~ql~~aL~~lH---~~~ivHrDLKp~NILl~~~~--~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~  381 (507)
T PLN03224        307 DINVIKGVMRQVLTGLRKLH---RIGIVHRDIKPENLLVTVDG--QVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEE  381 (507)
T ss_pred             CHHHHHHHHHHHHHHHHHHH---HCCeecCCCchHhEEECCCC--cEEEEeCcCccccccCCccCccccCCCcceeChhh
Confidence            56778889999999999999   55899999999999999754  578899998753211       1234789999998


Q ss_pred             cCCCC--------------------C--CCcchHHHHHHHHHHHHcCCC-CCC
Q 002105          849 KESKD--------------------I--TEKGDIYGFGLILIDLLTGKS-PAD  878 (966)
Q Consensus       849 ~~~~~--------------------~--~~~~Dv~S~Gv~l~el~tg~~-p~~  878 (966)
                      +....                    |  ..+.||||+||++|||++|.. |+.
T Consensus       382 l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~  434 (507)
T PLN03224        382 LVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVA  434 (507)
T ss_pred             hcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCcc
Confidence            65322                    1  235799999999999999975 554

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.93  E-value=8e-26  Score=234.25  Aligned_cols=235  Identities=19%  Similarity=0.277  Sum_probs=172.5

Q ss_pred             CCCCccEEEEEEEecC-----CcEEEEEEEecc-CcccccchHHHHHHHHhhcCCCceeEEeeEEecC-CeeEEEEEccC
Q 002105          692 GKKGVSSSYKVRSLAN-----DMQFVVKKIIDV-NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE-KAAYLVYEYIE  764 (966)
Q Consensus       692 g~~g~~~vy~~~~~~~-----~~~vavk~~~~~-~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~-~~~~lv~Ey~~  764 (966)
                      -+|.||.||+|.+...     .++|-||.+.+. .+....-+..|--.+.. +.|||+.++.|++.++ ..++.+|.|+.
T Consensus       293 qEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~-~sH~nll~V~~V~ie~~~~P~V~y~~~~  371 (563)
T KOG1024|consen  293 QEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYG-ASHPNLLSVLGVSIEDYATPFVLYPATG  371 (563)
T ss_pred             hcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhc-CcCCCccceeEEEeeccCcceEEEeccC
Confidence            4678888999965322     234556655433 22223345666555555 5899999999999764 56899999999


Q ss_pred             CCCHHHHHH-----------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec
Q 002105          765 GKELSEVLR-----------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT  833 (966)
Q Consensus       765 ~g~L~~~l~-----------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~  833 (966)
                      -|+|..+|+           .++-.+...+|.|+|.|++|||   ..+|||.||.+.|.++|+.  -++|+.|..+++..
T Consensus       372 ~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh---~~~ViHkDiAaRNCvIdd~--LqVkltDsaLSRDL  446 (563)
T KOG1024|consen  372 VGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLH---NHGVIHKDIAARNCVIDDQ--LQVKLTDSALSRDL  446 (563)
T ss_pred             cchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHH---hcCcccchhhhhcceehhh--eeEEeccchhcccc
Confidence            999999997           1455667789999999999999   4599999999999999964  56788888776542


Q ss_pred             C--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccc
Q 002105          834 D--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWV  904 (966)
Q Consensus       834 ~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  904 (966)
                      -        ...-....||+||.+....|+.++|||||||+||||+| |+.|+-.-  +..   |......++.++.   
T Consensus       447 FP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeI--DPf---Em~~ylkdGyRla---  518 (563)
T KOG1024|consen  447 FPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEI--DPF---EMEHYLKDGYRLA---  518 (563)
T ss_pred             CcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCcccc--CHH---HHHHHHhccceec---
Confidence            1        11123457999999999999999999999999999988 88897431  111   2222222222221   


Q ss_pred             cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          905 DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       905 d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      .|         .++..++..+|.-||+..|++||+++|++.-|.+
T Consensus       519 QP---------~NCPDeLf~vMacCWallpeeRPsf~Qlv~cLse  554 (563)
T KOG1024|consen  519 QP---------FNCPDELFTVMACCWALLPEERPSFSQLVICLSE  554 (563)
T ss_pred             CC---------CCCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence            12         1234477788899999999999999999999887

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.93  E-value=1.5e-26  Score=261.63  Aligned_cols=232  Identities=22%  Similarity=0.308  Sum_probs=171.9

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      +.+.|.|..|+ .||+|..  .|+.||||++.....   .-..+|+..+...-.|||||++|+.-.+.+..||+.|.|. 
T Consensus       514 ~eilG~Gs~Gt-~Vf~G~y--e~R~VAVKrll~e~~---~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~-  586 (903)
T KOG1027|consen  514 KEILGYGSNGT-VVFRGVY--EGREVAVKRLLEEFF---DFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCA-  586 (903)
T ss_pred             HHHcccCCCCc-EEEEEee--CCceehHHHHhhHhH---HHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhh-
Confidence            44555666554 4899886  788999999854321   1235677777765679999999999999999999999998 


Q ss_pred             CCHHHHHHc--CCH-----HHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcC---CCCceEEEeccccceec--
Q 002105          766 KELSEVLRN--LSW-----ERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDG---KDEPHLRLSVPGLAYCT--  833 (966)
Q Consensus       766 g~L~~~l~~--l~~-----~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~---~~~~~~~~~~~~~~~~~--  833 (966)
                      -+|.+++..  .+-     ...+.+..|+++||++||   +.+|||||+||.||||+.   ++..+++++|||+.+..  
T Consensus       587 ~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLH---sl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~  663 (903)
T KOG1027|consen  587 CSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLH---SLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAG  663 (903)
T ss_pred             hhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHH---hcccccccCCCceEEEEccCCCcceeEEecccccccccCC
Confidence            599999975  221     223567889999999999   569999999999999986   46667789999997642  


Q ss_pred             -------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcC-CCCCCCCCCchhhHHHHHHHhhccCccccccc
Q 002105          834 -------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTG-KSPADADFGVHESIVEWARYCYSDCHLDTWVD  905 (966)
Q Consensus       834 -------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  905 (966)
                             .....||.||+|||++....-+.++||+|+|||+|+.+|| ..||.....-...+   ...   ...+.. +.
T Consensus       664 ~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~NI---l~~---~~~L~~-L~  736 (903)
T KOG1027|consen  664 GKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANI---LTG---NYTLVH-LE  736 (903)
T ss_pred             CcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhhhhh---hcC---ccceee-ec
Confidence                   2334689999999999988888899999999999999997 88986432111111   000   001100 11


Q ss_pred             ccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 002105          906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVT  944 (966)
Q Consensus       906 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~  944 (966)
                      |        ..++  +..+++.+.++++|..||++.+|+
T Consensus       737 ~--------~~d~--eA~dLI~~ml~~dP~~RPsa~~VL  765 (903)
T KOG1027|consen  737 P--------LPDC--EAKDLISRMLNPDPQLRPSATDVL  765 (903)
T ss_pred             c--------CchH--HHHHHHHHhcCCCcccCCCHHHHh
Confidence            0        1122  566778888999999999999996

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=1.4e-25  Score=227.39  Aligned_cols=189  Identities=25%  Similarity=0.395  Sum_probs=158.3

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEecc--C-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV--N-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .-+..+|+|.++.|..++++.+++.+|+|.+++.  + ..+..-...|-..+.+.-+||.+|-++.+++++..+++|.||
T Consensus       253 ~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlffviey  332 (593)
T KOG0695|consen  253 DLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFFVIEY  332 (593)
T ss_pred             eeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEEEEEE
Confidence            3455678999999999999999999999987543  1 111122233433444445899999999999999999999999


Q ss_pred             cCCCCHHHHH---HcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee------c
Q 002105          763 IEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------T  833 (966)
Q Consensus       763 ~~~g~L~~~l---~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~------~  833 (966)
                      ++||+|--++   ++++.+..+-+...|..||.|||   +.+||.||+|-.|||+|.  +.++|+.|.|..+.      +
T Consensus       333 v~ggdlmfhmqrqrklpeeharfys~ei~lal~flh---~rgiiyrdlkldnvllda--eghikltdygmcke~l~~gd~  407 (593)
T KOG0695|consen  333 VNGGDLMFHMQRQRKLPEEHARFYSAEICLALNFLH---ERGIIYRDLKLDNVLLDA--EGHIKLTDYGMCKEGLGPGDT  407 (593)
T ss_pred             ecCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHh---hcCeeeeeccccceEEcc--CCceeecccchhhcCCCCCcc
Confidence            9999997555   35888888889999999999999   679999999999999995  56899999998754      3


Q ss_pred             CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCC
Q 002105          834 DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADA  879 (966)
Q Consensus       834 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~  879 (966)
                      .+..+|||.|+|||++.+..|...+|-|++||+++||+.|+.||+-
T Consensus       408 tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdi  453 (593)
T KOG0695|consen  408 TSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDI  453 (593)
T ss_pred             cccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcce
Confidence            4567999999999999999999999999999999999999999973

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.2e-26  Score=227.20  Aligned_cols=252  Identities=21%  Similarity=0.355  Sum_probs=180.9

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEecC--------Ce
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--------KA  755 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--------~~  755 (966)
                      +....+|.|.||+||+|+....|+.||+|++.-.  ...-.....+|+..+.. ++|+|+|.+++.|...        ..
T Consensus        20 ek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~-lkHenv~nliEic~tk~Tp~~r~r~t   98 (376)
T KOG0669|consen   20 EKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQL-LKHENVVNLIEICRTKATPTNRDRAT   98 (376)
T ss_pred             HHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHH-hcchhHHHHHHHHhhccCCcccccce
Confidence            4455679999999999999999999999886432  22223445778877766 6999999999999652        34


Q ss_pred             eEEEEEccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccce
Q 002105          756 AYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY  831 (966)
Q Consensus       756 ~~lv~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~  831 (966)
                      .|+||++|+. ||...|.    +++..+..++..++..||.|+|   +..|+|||+||+|+|++.++  .+++.|||++.
T Consensus        99 ~ylVf~~ceh-DLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iH---r~kilHRDmKaaNvLIt~dg--ilklADFGlar  172 (376)
T KOG0669|consen   99 FYLVFDFCEH-DLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIH---RNKILHRDMKAANVLITKDG--ILKLADFGLAR  172 (376)
T ss_pred             eeeeHHHhhh-hHHHHhcCccccccHHHHHHHHHHHHHHHHHHH---HhhHHhhcccHhhEEEcCCc--eEEeecccccc
Confidence            8999999995 7877774    4788899999999999999999   66899999999999999654  57899999985


Q ss_pred             ecCC----------CCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcc
Q 002105          832 CTDS----------KSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHL  900 (966)
Q Consensus       832 ~~~~----------~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  900 (966)
                      ....          ..+-|..|.+||.+.+ +.|+++.|||.-|||+.||.||.+-+++.......  ..++........
T Consensus       173 ~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql--~~Is~LcGs~tk  250 (376)
T KOG0669|consen  173 AFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQL--HLISQLCGSITK  250 (376)
T ss_pred             ceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHH--HHHHHHhccCCc
Confidence            4221          1123778999998765 56899999999999999999999888765322211  222222211111


Q ss_pred             cccc-------------cccccCCCcchHHHHH------HHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          901 DTWV-------------DPFIRGHVSSIQNEIV------EIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       901 ~~~~-------------d~~~~~~~~~~~~~~~------~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      +.|.             .|...+......+.+.      +..+++..-+..||.+||.+++++..
T Consensus       251 evWP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh  315 (376)
T KOG0669|consen  251 EVWPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALNH  315 (376)
T ss_pred             ccCCCcccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhch
Confidence            1111             2222222222222222      45566667788999999999988753

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.3e-25  Score=244.77  Aligned_cols=200  Identities=20%  Similarity=0.351  Sum_probs=161.0

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCccccc---chHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTS---SFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~---~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      ..+..+|-|.||+|..++...+...+|.|.+.+.+-....   ...+|-..++. -..+-||+||-.|++++.+|+||||
T Consensus       632 vkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAE-ADn~WVVrLyySFQDkdnLYFVMdY  710 (1034)
T KOG0608|consen  632 VKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAE-ADNEWVVRLYYSFQDKDNLYFVMDY  710 (1034)
T ss_pred             EEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhh-cCCcceEEEEEEeccCCceEEEEec
Confidence            4567789999999999998888888999988655433222   23344445555 5899999999999999999999999


Q ss_pred             cCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------
Q 002105          763 IEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------  833 (966)
Q Consensus       763 ~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------  833 (966)
                      ++|||+-..|-+   +.+...+-++..++.|+++.|   ..|.|||||||+|||||.+  .+||+.|||+..-.      
T Consensus       711 IPGGDmMSLLIrmgIFeE~LARFYIAEltcAiesVH---kmGFIHRDiKPDNILIDrd--GHIKLTDFGLCTGfRWTHds  785 (1034)
T KOG0608|consen  711 IPGGDMMSLLIRMGIFEEDLARFYIAELTCAIESVH---KMGFIHRDIKPDNILIDRD--GHIKLTDFGLCTGFRWTHDS  785 (1034)
T ss_pred             cCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH---hccceecccCccceEEccC--Cceeeeeccccccceecccc
Confidence            999999988754   666667778888999999999   6699999999999999954  67999999985310      


Q ss_pred             -----------C-------------------------------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHH
Q 002105          834 -----------D-------------------------------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLL  871 (966)
Q Consensus       834 -----------~-------------------------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~  871 (966)
                                 +                               ...+||+.|+|||++....|+.-+|-||.|||||||+
T Consensus       786 kYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~  865 (1034)
T KOG0608|consen  786 KYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEML  865 (1034)
T ss_pred             ccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHh
Confidence                       0                               0126899999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCc--hhhHHHHH
Q 002105          872 TGKSPADADFGV--HESIVEWA  891 (966)
Q Consensus       872 tg~~p~~~~~~~--~~~~~~~~  891 (966)
                      .|+.||.++...  ...++.|.
T Consensus       866 ~g~~pf~~~tp~~tq~kv~nw~  887 (1034)
T KOG0608|consen  866 VGQPPFLADTPGETQYKVINWR  887 (1034)
T ss_pred             hCCCCccCCCCCcceeeeeehh
Confidence            999999866433  23344554

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=4e-26  Score=243.48  Aligned_cols=189  Identities=22%  Similarity=0.330  Sum_probs=157.6

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc---ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      +.+...|-||||.|=.+........+|.|.+.+..-.+   .+..+.|-..+.+ ++.|.||++|..|.+..+.|+.||-
T Consensus       423 ~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~-~~s~fIvrLYrTfrd~kyvYmLmEa  501 (732)
T KOG0614|consen  423 KRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMME-CRSDFIVRLYRTFRDSKYVYMLMEA  501 (732)
T ss_pred             hhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHh-cCchHHHHHHHHhccchhhhhhHHh
Confidence            45566799999999988875555558888775543222   2234455555555 7899999999999999999999999


Q ss_pred             cCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          763 IEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       763 ~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      |-||.+...|+.   ++.....-++..+.+|++|||   +.+||.||+||+|.+||.+  ..+|+.|||+++...     
T Consensus       502 ClGGElWTiLrdRg~Fdd~tarF~~acv~EAfeYLH---~k~iIYRDLKPENllLd~~--Gy~KLVDFGFAKki~~g~KT  576 (732)
T KOG0614|consen  502 CLGGELWTILRDRGSFDDYTARFYVACVLEAFEYLH---RKGIIYRDLKPENLLLDNR--GYLKLVDFGFAKKIGSGRKT  576 (732)
T ss_pred             hcCchhhhhhhhcCCcccchhhhhHHHHHHHHHHHH---hcCceeccCChhheeeccC--CceEEeehhhHHHhccCCce
Confidence            999999999974   777888889999999999999   6699999999999999965  456889999987532     


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                      -+.+|||.|+|||++..+.++.++|.||+|+++|||+||++||.+.
T Consensus       577 wTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~  622 (732)
T KOG0614|consen  577 WTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGV  622 (732)
T ss_pred             eeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCC
Confidence            2358999999999999999999999999999999999999999764

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.92  E-value=5.9e-24  Score=220.32  Aligned_cols=202  Identities=30%  Similarity=0.513  Sum_probs=169.1

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCHH
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS  769 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L~  769 (966)
                      +|+|++|.||++....++..+++|+....... ..+.+.+|+..+.+ ++|++|+++++++......+++|||+++++|.
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~-l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~   79 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKK-LNHPNIVKLYGVFEDENHLYLVMEYCEGGSLK   79 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHh-cCCCCeeeEeeeeecCCeEEEEEecCCCCcHH
Confidence            47888999999998666899999988654332 23457788887777 69999999999999999999999999999999


Q ss_pred             HHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC------CCcC
Q 002105          770 EVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS------KSIN  839 (966)
Q Consensus       770 ~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~------~~~~  839 (966)
                      +++..    +++..+..++.+++++++|||   ..+++|+||+|.||+++.. ...+++.|++.+.....      ...+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~~~H~dl~~~ni~~~~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~  155 (215)
T cd00180          80 DLLKENEGKLSEDEILRILLQILEGLEYLH---SNGIIHRDLKPENILLDSD-NGKVKLADFGLSKLLTSDKSLLKTIVG  155 (215)
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHhhEEEeCC-CCcEEEecCCceEEccCCcchhhcccC
Confidence            99863    789999999999999999999   4599999999999999962 34578888887764322      2456


Q ss_pred             CcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          840 SSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       840 ~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      ...|++||..... .++.++|+|++|++++|+                                                
T Consensus       156 ~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l------------------------------------------------  187 (215)
T cd00180         156 TPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL------------------------------------------------  187 (215)
T ss_pred             CCCccChhHhcccCCCCchhhhHHHHHHHHHH------------------------------------------------
Confidence            7789999998877 788999999999999998                                                


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                       .++.+++..|++.+|++||++.++++.
T Consensus       188 -~~~~~~l~~~l~~~p~~R~~~~~l~~~  214 (215)
T cd00180         188 -PELKDLIRKMLQKDPEKRPSAKEILEH  214 (215)
T ss_pred             -HHHHHHHHHHhhCCcccCcCHHHHhhC
Confidence             134556778999999999999999864

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.92  E-value=1.7e-24  Score=201.59  Aligned_cols=186  Identities=24%  Similarity=0.364  Sum_probs=153.4

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEec--cCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIID--VNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~--~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ....+|+|.+|.|||++...++..||+|++.-  .+..-.+...+|+-.+.. ++|.|||+++++..+++..-+|+|||.
T Consensus         6 kmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllke-lkhknivrl~dvlhsdkkltlvfe~cd   84 (292)
T KOG0662|consen    6 KMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKE-LKHKNIVRLHDVLHSDKKLTLVFEFCD   84 (292)
T ss_pred             HHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHH-hhhcceeehhhhhccCceeEEeHHHhh
Confidence            44567999999999999988899999998853  334445677899988877 699999999999999999999999997


Q ss_pred             CCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          765 GKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       765 ~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                       .+|..|..    .++.+..+.+..|+.+||.|+|++   .+.|||+||.|.|++.+++  +|+.|||++....      
T Consensus        85 -qdlkkyfdslng~~d~~~~rsfmlqllrgl~fchsh---nvlhrdlkpqnllin~nge--lkladfglarafgipvrcy  158 (292)
T KOG0662|consen   85 -QDLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSH---NVLHRDLKPQNLLINRNGE--LKLADFGLARAFGIPVRCY  158 (292)
T ss_pred             -HHHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhh---hhhhccCCcceEEeccCCc--EEecccchhhhcCCceEee
Confidence             57877765    377888889999999999999954   7999999999999997655  6889999876422      


Q ss_pred             CCCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHc-CCCCCCC
Q 002105          835 SKSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLT-GKSPADA  879 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~t-g~~p~~~  879 (966)
                      +..+-|..|.+|.++-+. -|++..|+||-|||+.|+.. |++-|.+
T Consensus       159 saevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg  205 (292)
T KOG0662|consen  159 SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPG  205 (292)
T ss_pred             eceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCC
Confidence            233457889999987654 58999999999999999986 4444543

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.91  E-value=5.6e-25  Score=229.04  Aligned_cols=254  Identities=16%  Similarity=0.238  Sum_probs=186.0

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCC-----ceeEEeeEEecCCeeEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHP-----NIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~-----niv~l~g~~~~~~~~~lv~  760 (966)
                      +.+...|+|.||.|..+.+...+..||||.+....... ++..-|+..+.++..|.     -+|++.+++.-.+..+||+
T Consensus        92 ~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYr-eAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghiCivf  170 (415)
T KOG0671|consen   92 EIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYR-EAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHICIVF  170 (415)
T ss_pred             ehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHHh-hHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCceEEEE
Confidence            44555789999999999998888999999876554432 34466777777753443     3899999999999999999


Q ss_pred             EccCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC-----------------
Q 002105          761 EYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-----------------  818 (966)
Q Consensus       761 Ey~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~-----------------  818 (966)
                      |.+ |-|+.++++.     ++-...+.|+.|++++++|||   ..+++|-|+||+|||+-+..                 
T Consensus       171 ell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh---~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~  246 (415)
T KOG0671|consen  171 ELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLH---DLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPL  246 (415)
T ss_pred             ecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHH---hcceeecCCChheEEEeccceEEEeccCCccceeccC
Confidence            988 3589999975     788899999999999999999   66999999999999984321                 


Q ss_pred             -CceEEEeccccceecC---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhh-HHHHHHH
Q 002105          819 -EPHLRLSVPGLAYCTD---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHES-IVEWARY  893 (966)
Q Consensus       819 -~~~~~~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~-~~~~~~~  893 (966)
                       ...|++.|||-+....   +..+.|..|.|||++.+-+.+.++||||+||||+|+.||..-|+........ ..+.+-.
T Consensus       247 ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMMerIlG  326 (415)
T KOG0671|consen  247 KSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMMERILG  326 (415)
T ss_pred             CCcceEEEecCCcceeccCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHHHHHHHHhhC
Confidence             2346788999876543   3347789999999999999999999999999999999999988764321111 1111100


Q ss_pred             --------------hhccCcccccccccccC--------------CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          894 --------------CYSDCHLDTWVDPFIRG--------------HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       894 --------------~~~~~~~~~~~d~~~~~--------------~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                                    .+..+. -.|.+....+              .......+..++++++.+.+..||.+|+|++|++.
T Consensus       327 p~P~~mi~r~~~~Kyf~~~r-ldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~  405 (415)
T KOG0671|consen  327 PIPSRMIKKTRKEKYFRRGR-LDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREALS  405 (415)
T ss_pred             CCcHHHhhhhhhHhhhhccc-ccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHhc
Confidence                          000011 1111111111              01112346678899999999999999999999874

>PLN03210 Resistant to P

Probab=99.91  E-value=4.4e-23  Score=263.81  Aligned_cols=362  Identities=19%  Similarity=0.246  Sum_probs=221.2

Q ss_pred             CEEEEEcCCCCccc--cccccccCCCCCCEEEcCCCC------CccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCC
Q 002105           62 HVNAIELSAKNISG--KISSSIFHLPHVESINLSSNQ------LSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSR  133 (966)
Q Consensus        62 ~v~~L~L~~~~l~~--~~~~~~~~l~~L~~L~Ls~N~------l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~  133 (966)
                      +|..+.+....+..  ..+.+|..+++|+.|.+.++.      +...+|.++.....+|+.|++.+|.+....+...+.+
T Consensus       533 ~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~  612 (1153)
T PLN03210        533 KVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPEN  612 (1153)
T ss_pred             eeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccC
Confidence            45555554444332  223467888888888886653      3335666665555678888888887764333345678


Q ss_pred             CcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccC
Q 002105          134 LEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGY  213 (966)
Q Consensus       134 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  213 (966)
                      |++|+|++|++. .+|..+..+++|+.|+|+++...+.+| .++.+++|+.|++++|.....+|..++++++|+.|++++
T Consensus       613 L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~  690 (1153)
T PLN03210        613 LVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR  690 (1153)
T ss_pred             CcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence            888888888876 467777788888888888776555666 377788888888888776667788888888888888887


Q ss_pred             CCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCc
Q 002105          214 NNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIP  293 (966)
Q Consensus       214 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  293 (966)
                      |.....+|..+ ++++|++|++++|...+.+|..   .++|++|++++|.+. .+|..+ .+++|+.|++.++.... +.
T Consensus       691 c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~-l~  763 (1153)
T PLN03210        691 CENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEK-LW  763 (1153)
T ss_pred             CCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhh-cc
Confidence            65445666655 6777888888777654455532   346777777777765 445443 45666666665533210 00


Q ss_pred             hhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCC
Q 002105          294 EEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGS  373 (966)
Q Consensus       294 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~  373 (966)
                      ..                +....+......++|+.|+|++|...+.+|..++.+++|+.|++++|..-+.+|..+ .+++
T Consensus       764 ~~----------------~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~s  826 (1153)
T PLN03210        764 ER----------------VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLES  826 (1153)
T ss_pred             cc----------------ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cccc
Confidence            00                000011111123445555555555444555555555555555555543333444433 4455


Q ss_pred             ccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCC-CCCCccCcchhccCCCcEecCC
Q 002105          374 LFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGN-DLSGRIGEQKWEMTSLQMLNLA  452 (966)
Q Consensus       374 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N-~l~~~~~~~~~~l~~L~~L~Ls  452 (966)
                      |+.|++++|.....+|..   .++|+.|+|++|.+. .+|..+..+++|++|++++| ++. .+|.....+++|+.++++
T Consensus       827 L~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~  901 (1153)
T PLN03210        827 LESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFS  901 (1153)
T ss_pred             cCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecC
Confidence            555555555443344432   246677777777776 35666777777777777773 444 355566677778888777


Q ss_pred             CC
Q 002105          453 GN  454 (966)
Q Consensus       453 ~N  454 (966)
                      +|
T Consensus       902 ~C  903 (1153)
T PLN03210        902 DC  903 (1153)
T ss_pred             CC
Confidence            66

syringae 6; Provisional

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.91  E-value=2.5e-25  Score=245.11  Aligned_cols=239  Identities=20%  Similarity=0.271  Sum_probs=176.7

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      +-+-..|.|.+|.|||+|++..+...|||.+.-......+...+|+..+.. ++|||||.++|.|...+..+++||||.+
T Consensus        18 ellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~d-c~h~nivay~gsylr~dklwicMEycgg   96 (829)
T KOG0576|consen   18 ELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRD-CRHPNIVAYFGSYLRRDKLWICMEYCGG   96 (829)
T ss_pred             hheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeec-CCCcChHHHHhhhhhhcCcEEEEEecCC
Confidence            444567999999999999999999999998754433333334455555544 8999999999999999999999999999


Q ss_pred             CCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCC
Q 002105          766 KELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSK  836 (966)
Q Consensus       766 g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~  836 (966)
                      |+|.+.-+   .++..+...++....+|++|||   +.+-+|||||-+||++.+.++  +++.|||.+...      ...
T Consensus        97 gslQdiy~~TgplselqiayvcRetl~gl~ylh---s~gk~hRdiKGanilltd~gD--vklaDfgvsaqitati~Krks  171 (829)
T KOG0576|consen   97 GSLQDIYHVTGPLSELQIAYVCRETLQGLKYLH---SQGKIHRDIKGANILLTDEGD--VKLADFGVSAQITATIAKRKS  171 (829)
T ss_pred             CcccceeeecccchhHHHHHHHhhhhccchhhh---cCCcccccccccceeecccCc--eeecccCchhhhhhhhhhhhc
Confidence            99988655   3777778888999999999999   668899999999999986544  688899986542      234


Q ss_pred             CcCCccccccccc---CCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          837 SINSSAYVAPETK---ESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       837 ~~~~~~y~aPE~~---~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      .+||+.|||||+.   ..+.|..++|||+.|+...|+.--++|..   ..+..   .+.....+..    .+|.-..+..
T Consensus       172 fiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplf---dlhpm---r~l~LmTkS~----~qpp~lkDk~  241 (829)
T KOG0576|consen  172 FIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLF---DLHPM---RALFLMTKSG----FQPPTLKDKT  241 (829)
T ss_pred             ccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCccc---ccchH---HHHHHhhccC----CCCCcccCCc
Confidence            5899999999975   35679999999999999999998888842   21111   1111111111    2332222222


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDV  943 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v  943 (966)
                      .+.+.   +-+++..|+-++|++||+++..
T Consensus       242 kws~~---fh~fvK~altknpKkRptaekl  268 (829)
T KOG0576|consen  242 KWSEF---FHNFVKGALTKNPKKRPTAEKL  268 (829)
T ss_pred             cchHH---HHHHHHHHhcCCCccCCChhhh
Confidence            33343   3445556788999999998654

>PLN03210 Resistant to P

Probab=99.91  E-value=5.4e-23  Score=262.97  Aligned_cols=344  Identities=20%  Similarity=0.238  Sum_probs=197.2

Q ss_pred             CCCCCCCCCEEEccCCC------CcccCCcccccCC-cceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcC
Q 002105          175 SISNITSLQIFTLASNQ------LIGSIPREIGQLR-NLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS  247 (966)
Q Consensus       175 ~~~~l~~L~~L~L~~n~------l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  247 (966)
                      .|.+|++|+.|.+..+.      +...+|..+..++ +|+.|++.++.+. .+|..| .+.+|++|++++|++. .+|..
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~  629 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG  629 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence            35556666666664432      2223555555543 4666666666654 455555 3566666777666665 35555


Q ss_pred             CCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCcc
Q 002105          248 FGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQ  327 (966)
Q Consensus       248 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  327 (966)
                      +..+++|++|+|+++...+.+|. +..+++|++|+|++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~  707 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY  707 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence            66666667777666544444443 5566666666666665555666666666666666666654444455443 566666


Q ss_pred             EEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccc
Q 002105          328 VLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNR  407 (966)
Q Consensus       328 ~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~  407 (966)
                      .|++++|...+.+|..   ..+|+.|++++|.+. .+|..+ .+++|..|.+.++.... +.                +.
T Consensus       708 ~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~-l~----------------~~  765 (1153)
T PLN03210        708 RLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEK-LW----------------ER  765 (1153)
T ss_pred             EEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhh-cc----------------cc
Confidence            6666666544444432   245566666666654 334332 23444444443322110 00                01


Q ss_pred             cCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCccCCCCcCcccccccccccccccccCCCcc
Q 002105          408 LSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSF  487 (966)
Q Consensus       408 l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~  487 (966)
                      +....+..+...++|+.|++++|...+.+|..+.++++|+.|++++|..-+.+|....+++|+.|++++|.....+|.. 
T Consensus       766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~-  844 (1153)
T PLN03210        766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI-  844 (1153)
T ss_pred             ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc-
Confidence            1111112222334566666666655555666666666666666666544445555445666777777766544444432 


Q ss_pred             cCcCCCCEEEccCCccCCCChhhccccccccccccCCc-eeccccCccCCCCCCCcEEeCCCCc
Q 002105          488 GRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNN-QLSGHIPASLSEMPVLGQLDLSENQ  550 (966)
Q Consensus       488 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~LdLs~N~  550 (966)
                        ..+|+.|+|++|.++ .+|..+..+++|+.|+|++| ++. .+|..+..++.|+.|+++++.
T Consensus       845 --~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        845 --STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             --ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence              356777888888776 56777788888888888774 444 567777778888888887763

syringae 6; Provisional

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.90  E-value=1.4e-24  Score=269.62  Aligned_cols=185  Identities=17%  Similarity=0.252  Sum_probs=136.2

Q ss_pred             cCC-CceeEEeeEE-------ecCCeeEEEEEccCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEee
Q 002105          738 IMH-PNIVRLHGVC-------RSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAG  805 (966)
Q Consensus       738 ~~H-~niv~l~g~~-------~~~~~~~lv~Ey~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHr  805 (966)
                      .+| +||++++|+|       .+.+..+.+|||++ ++|.++|+.    +++.+...++.||++||+|||   +.+||||
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~gIvHr  104 (793)
T PLN00181         29 LSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECED-VSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAH---SQGIVVH  104 (793)
T ss_pred             hhHHHHHHHhhcccCCccccccccchhhhhhccCC-ccHHHHHhcccccccHHHHHHHHHHHHHHHHHHH---hCCeeec
Confidence            467 7899999988       23346778899884 699999953    889999999999999999999   5699999


Q ss_pred             cCCCCcEEEcC-----------------CCCceEEEeccccceecC----------------------CCCcCCcccccc
Q 002105          806 DVSPGKVIVDG-----------------KDEPHLRLSVPGLAYCTD----------------------SKSINSSAYVAP  846 (966)
Q Consensus       806 Dlk~~Nill~~-----------------~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~y~aP  846 (966)
                      ||||+|||++.                 +....+++.|||++....                      ....||+.||||
T Consensus       105 DlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  184 (793)
T PLN00181        105 NVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSP  184 (793)
T ss_pred             cCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceECh
Confidence            99999999964                 223346677888764211                      012478889999


Q ss_pred             cccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHH
Q 002105          847 ETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLA  926 (966)
Q Consensus       847 E~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~  926 (966)
                      |++.+..|+.++|||||||++|||++|.+|+....   .....+....         .++..       .....+...++
T Consensus       185 E~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~---~~~~~~~~~~---------~~~~~-------~~~~~~~~~~~  245 (793)
T PLN00181        185 EEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKS---RTMSSLRHRV---------LPPQI-------LLNWPKEASFC  245 (793)
T ss_pred             hhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHH---HHHHHHHHhh---------cChhh-------hhcCHHHHHHH
Confidence            99999999999999999999999999998864321   1111111100         11111       11122345677


Q ss_pred             HHccCCCCCCCCCHHHHHH
Q 002105          927 LHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       927 ~~C~~~~P~~RPt~~~v~~  945 (966)
                      .+|++.+|.+||+|.||++
T Consensus       246 ~~~L~~~P~~Rps~~eil~  264 (793)
T PLN00181        246 LWLLHPEPSCRPSMSELLQ  264 (793)
T ss_pred             HHhCCCChhhCcChHHHhh
Confidence            8999999999999999974

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.90  E-value=1e-24  Score=215.60  Aligned_cols=239  Identities=20%  Similarity=0.303  Sum_probs=179.3

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEe--ccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCH
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKII--DVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL  768 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~--~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L  768 (966)
                      +.....|+.|+|++  .|..+++|.+.  +......++|..|.-.+.- ..||||..++|.|.++..+.++..||+-|+|
T Consensus       198 l~e~hsgelwrgrw--qgndivakil~vr~~t~risrdfneefp~lri-fshpnilpvlgacnsppnlv~isq~mp~gsl  274 (448)
T KOG0195|consen  198 LAESHSGELWRGRW--QGNDIVAKILNVREVTARISRDFNEEFPALRI-FSHPNILPVLGACNSPPNLVIISQYMPFGSL  274 (448)
T ss_pred             hccCCCcccccccc--cCcchhhhhhhhhhcchhhcchhhhhCcceee-ecCCchhhhhhhccCCCCceEeeeeccchHH
Confidence            34445667999986  44455666553  3344456778877776655 6899999999999999999999999999999


Q ss_pred             HHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCCCcCCccc
Q 002105          769 SEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAY  843 (966)
Q Consensus       769 ~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  843 (966)
                      ...|+.     .+-.+..++|.+||+|++|||+. .+-|.---+.+..|++|++..+++..+|..++.... .....|.|
T Consensus       275 ynvlhe~t~vvvd~sqav~faldiargmaflhsl-ep~ipr~~lns~hvmidedltarismad~kfsfqe~-gr~y~paw  352 (448)
T KOG0195|consen  275 YNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSL-EPMIPRFYLNSKHVMIDEDLTARISMADTKFSFQEV-GRAYSPAW  352 (448)
T ss_pred             HHHHhcCccEEEecchHHHHHHHHHhhHHHHhhc-chhhhhhhcccceEEecchhhhheecccceeeeecc-ccccCccc
Confidence            999985     57788999999999999999976 555555678999999999999988888877765433 23457899


Q ss_pred             ccccccCCCCCC---CcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHH
Q 002105          844 VAPETKESKDIT---EKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIV  920 (966)
Q Consensus       844 ~aPE~~~~~~~~---~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  920 (966)
                      |+||.++.++.+   .++|+|||.|++||+.|...||..- ..++.-.+.+   .++      +.+.+++..+      .
T Consensus       353 mspealqrkped~n~raadmwsfaillwel~trevpfadl-spmecgmkia---leg------lrv~ippgis------~  416 (448)
T KOG0195|consen  353 MSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADL-SPMECGMKIA---LEG------LRVHIPPGIS------R  416 (448)
T ss_pred             CCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccC-Cchhhhhhhh---hcc------ccccCCCCcc------H
Confidence            999998876654   3789999999999999999998632 2222111111   111      2222222221      1


Q ss_pred             HHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 002105          921 EIMNLALHCTAGDPTARPCASDVTKTLESC  950 (966)
Q Consensus       921 ~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~  950 (966)
                      .+.+++.-|+.+||.+||.+..|+..||++
T Consensus       417 hm~klm~icmnedpgkrpkfdmivpilekm  446 (448)
T KOG0195|consen  417 HMNKLMNICMNEDPGKRPKFDMIVPILEKM  446 (448)
T ss_pred             HHHHHHHHHhcCCCCcCCCcceehhhHHHh
Confidence            355677789999999999999999999984

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.90  E-value=5.9e-23  Score=215.74  Aligned_cols=184  Identities=31%  Similarity=0.444  Sum_probs=157.5

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCH
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL  768 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L  768 (966)
                      .+|.|+++.||++....++..+|+|........ ..+.+..|++.+.+ ++|+|++++++++...+..+++|||+++++|
T Consensus         6 ~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~-~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L   84 (225)
T smart00221        6 KLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKK-LKHPNIVKLYGVFEDPEPLYLVMEYCEGGDL   84 (225)
T ss_pred             EeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHh-CCCCChhhheeeeecCCceEEEEeccCCCCH
Confidence            457888999999999777899999998654433 45567888888877 6999999999999999999999999999999


Q ss_pred             HHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-------CC
Q 002105          769 SEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-------KS  837 (966)
Q Consensus       769 ~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-------~~  837 (966)
                      .+++..    +++.....++.+++.+++|||.   .+++|+|++|+||+++.+  ..+++.|+|.+.....       ..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~di~~~ni~v~~~--~~~~l~d~g~~~~~~~~~~~~~~~~  159 (225)
T smart00221       85 FDYLRKKGGKLSEEEARFYLRQILEALEYLHS---LGIVHRDLKPENILLGMD--GLVKLADFGLARFIHRDLAALLKTV  159 (225)
T ss_pred             HHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCC--CCEEEeeCceeeEecCcccccccce
Confidence            999863    8899999999999999999994   499999999999999975  5678889988765322       23


Q ss_pred             cCCccccccccc-CCCCCCCcchHHHHHHHHHHHHcCCCCCCC
Q 002105          838 INSSAYVAPETK-ESKDITEKGDIYGFGLILIDLLTGKSPADA  879 (966)
Q Consensus       838 ~~~~~y~aPE~~-~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~  879 (966)
                      .++..|++||.. ....++.++||||||++++||++|+.||..
T Consensus       160 ~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      160 KGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             eccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            567789999998 677788899999999999999999999965

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.90  E-value=6.4e-24  Score=210.54  Aligned_cols=246  Identities=18%  Similarity=0.219  Sum_probs=177.8

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeE-EecCCeeEEEEEccCCCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV-CRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~-~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...|+|-||..-.+++......+|+|-+.. .....++|.+|..---.+-.|.|||.-|++ |++.+.++++|||+|.||
T Consensus        30 k~lgeG~FgkIlL~eHr~s~t~ivlKavp~-p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE~aP~gd  108 (378)
T KOG1345|consen   30 KQLGEGRFGKILLAEHRQSKTRIVLKAVPR-PQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQEFAPRGD  108 (378)
T ss_pred             HHhcccceeeEEeeeccCCceEEEeeccCc-chhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeeccCccch
Confidence            345888888899999988888888887643 344567788887543344469999998875 677888899999999999


Q ss_pred             HHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCCC---cCCcc
Q 002105          768 LSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSA  842 (966)
Q Consensus       768 L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  842 (966)
                      |..-+..  +.+....+++.|+++|+.|||   +..+||||||.+|||+-.....++|++|||......+.+   ..+-.
T Consensus       109 L~snv~~~GigE~~~K~v~~ql~SAi~fMH---sknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV~~~~~~~~  185 (378)
T KOG1345|consen  109 LRSNVEAAGIGEANTKKVFAQLLSAIEFMH---SKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTTVKYLEYVNN  185 (378)
T ss_pred             hhhhcCcccccHHHHHHHHHHHHHHHHHhh---ccchhhcccccceEEEecCCccEEEeeecccccccCceehhhhhhcc
Confidence            9988863  677788899999999999999   679999999999999965555699999999876544332   23457


Q ss_pred             cccccccCC---C--CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          843 YVAPETKES---K--DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       843 y~aPE~~~~---~--~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      |-|||....   +  .+.+.+|||.||+++|..+||+.|++.+........+|......  ....     .+.......+
T Consensus       186 y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~r--k~~~-----~P~~F~~fs~  258 (378)
T KOG1345|consen  186 YHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKR--KNPA-----LPKKFNPFSE  258 (378)
T ss_pred             cCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcc--cCcc-----CchhhcccCH
Confidence            899986432   2  34678899999999999999999998654444445555543222  1111     1111111123


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVTKTLE  948 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~  948 (966)
                      .   .+++-.+-+..+|++|--..++.++-.
T Consensus       259 ~---a~r~Fkk~lt~~~~drcki~~~kk~rk  286 (378)
T KOG1345|consen  259 K---ALRLFKKSLTPRFKDRCKIWTAKKMRK  286 (378)
T ss_pred             H---HHHHHHHhcCCcccccchhHHHHHHHH
Confidence            2   333344667889998876666665544

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.90  E-value=1.7e-23  Score=212.97  Aligned_cols=248  Identities=20%  Similarity=0.279  Sum_probs=173.5

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEec------CCeeE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS------EKAAY  757 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~------~~~~~  757 (966)
                      .++.-.|.|.- .|..+.+.-.++.||+||+...  .....+...+|... ++.+.|+|||+++.++.-      ....|
T Consensus        20 ~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l-~~~v~~~nii~l~n~ftP~~~l~~~~e~y   97 (369)
T KOG0665|consen   20 VNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKL-MKCVNHKNIISLLNVFTPQKTLEEFQEVY   97 (369)
T ss_pred             eeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhh-hhhhcccceeeeeeccCccccHHHHHhHH
Confidence            44444455444 4666777778899999998643  22223334455544 444799999999999853      34679


Q ss_pred             EEEEccCCCCHHHHHH-cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCC
Q 002105          758 LVYEYIEGKELSEVLR-NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK  836 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~-~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~  836 (966)
                      +|||||. ++|.+.++ +++..+...|..|++.|++|||   +.+|+||||||+||++..+  ..+|+.|||++......
T Consensus        98 ~v~e~m~-~nl~~vi~~elDH~tis~i~yq~~~~ik~lh---s~~IihRdLkPsnivv~~~--~~lKi~dfg~ar~e~~~  171 (369)
T KOG0665|consen   98 LVMELMD-ANLCQVILMELDHETISYILYQMLCGIKHLH---SAGIIHRDLKPSNIVVNSD--CTLKILDFGLARTEDTD  171 (369)
T ss_pred             HHHHhhh-hHHHHHHHHhcchHHHHHHHHHHHHHHHHHH---hcceeecccCcccceecch--hheeeccchhhcccCcc
Confidence            9999998 68888876 5788888899999999999999   6799999999999999854  45788999998764333


Q ss_pred             -----CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhh----------------
Q 002105          837 -----SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCY----------------  895 (966)
Q Consensus       837 -----~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~----------------  895 (966)
                           .+.|..|.|||++.+..|.+.+||||.||++.||++|+.-|.+.    +.+.+|.+..-                
T Consensus       172 ~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~----d~idQ~~ki~~~lgtpd~~F~~qL~~~  247 (369)
T KOG0665|consen  172 FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGK----DHIDQWNKIIEQLGTPDPSFMKQLQPT  247 (369)
T ss_pred             cccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCc----hHHHHHHHHHHHhcCCCHHHHHHhhHH
Confidence                 34566899999999988999999999999999999999876542    12223332111                


Q ss_pred             -----ccC-------cccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          896 -----SDC-------HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       896 -----~~~-------~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                           ...       ..+.+.|-..+........+.-...+++.+.+..+|++|-+++++++
T Consensus       248 ~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~  309 (369)
T KOG0665|consen  248 VRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALR  309 (369)
T ss_pred             HHHHhhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhc
Confidence                 000       00011111111111111112233456788889999999999999874

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.89  E-value=8e-23  Score=206.37  Aligned_cols=163  Identities=21%  Similarity=0.264  Sum_probs=118.2

Q ss_pred             CCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-CCCCcCC
Q 002105          766 KELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-DSKSINS  840 (966)
Q Consensus       766 g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-~~~~~~~  840 (966)
                      |+|.++++    .++|.++..++.||++||+|||..   +      ||+||+++.+...  ++  ||.+... .....||
T Consensus         1 GsL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~------kp~Nil~~~~~~~--~~--fG~~~~~~~~~~~g~   67 (176)
T smart00750        1 VSLADILEVRGRPLNEEEIWAVCLQCLRALRELHRQ---A------KSGNILLTWDGLL--KL--DGSVAFKTPEQSRVD   67 (176)
T ss_pred             CcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhc---C------CcccEeEcCccce--ee--ccceEeeccccCCCc
Confidence            78999986    289999999999999999999954   2      9999999976654  43  7766542 2334689


Q ss_pred             cccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHH
Q 002105          841 SAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIV  920 (966)
Q Consensus       841 ~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  920 (966)
                      +.|||||++.+..++.|+|||||||++|||+||+.||............+......       .++..+.. .....+..
T Consensus        68 ~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~  139 (176)
T smart00750       68 PYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPA-------DDPRDRSN-LESVSAAR  139 (176)
T ss_pred             ccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhcc-------CCcccccc-HHHHHhhh
Confidence            99999999999999999999999999999999999986543222222222211111       11110000 00011112


Q ss_pred             HHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          921 EIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       921 ~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      ++.+++.+|++.+|++||++.|+++.+..
T Consensus       140 ~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~  168 (176)
T smart00750      140 SFADFMRVCASRLPQRREAANHYLAHCRA  168 (176)
T ss_pred             hHHHHHHHHHhcccccccCHHHHHHHHHH
Confidence            57888999999999999999999998876

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.89  E-value=3.4e-23  Score=200.48  Aligned_cols=254  Identities=21%  Similarity=0.264  Sum_probs=185.7

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecC--CeeEEEEEc
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--KAAYLVYEY  762 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--~~~~lv~Ey  762 (966)
                      ++.+...|+|-+++||.|....+...++||.+...   ..+...+|+..+..+..|||||++++...++  ..+.+|+||
T Consensus        40 Yeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPV---kkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~  116 (338)
T KOG0668|consen   40 YEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPV---KKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFEY  116 (338)
T ss_pred             HHHHHHHcCccHhhHhcccccCCCceEEEeeechH---HHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhhh
Confidence            34455678999999999998888999999988654   3456788999998865699999999998765  467899999


Q ss_pred             cCCCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-----CC
Q 002105          763 IEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----KS  837 (966)
Q Consensus       763 ~~~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-----~~  837 (966)
                      +.+-+....-..++....+.+..++..||.|+|   +.||+|||+||.|+++|.. ..++++.|.|++..-..     ..
T Consensus       117 v~n~Dfk~ly~tl~d~dIryY~~elLkALdyCH---S~GImHRDVKPhNvmIdh~-~rkLrlIDWGLAEFYHp~~eYnVR  192 (338)
T KOG0668|consen  117 VNNTDFKQLYPTLTDYDIRYYIYELLKALDYCH---SMGIMHRDVKPHNVMIDHE-LRKLRLIDWGLAEFYHPGKEYNVR  192 (338)
T ss_pred             hccccHHHHhhhhchhhHHHHHHHHHHHHhHHH---hcCcccccCCcceeeechh-hceeeeeecchHhhcCCCceeeee
Confidence            999999888788888888889999999999999   7799999999999999964 45688999999854211     12


Q ss_pred             cCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhcc------CcccccccccccC
Q 002105          838 INSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD------CHLDTWVDPFIRG  910 (966)
Q Consensus       838 ~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~------~~~~~~~d~~~~~  910 (966)
                      +.+..|--||.+.. ..|+..-|+|||||++.+|+-.+.||-......+.++..++..-.+      ......+||....
T Consensus       193 VASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~  272 (338)
T KOG0668|consen  193 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFED  272 (338)
T ss_pred             eehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhh
Confidence            45667889997654 5678899999999999999999999865444444444444321100      0001112222211


Q ss_pred             ---CCc-c-hH-------H--HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          911 ---HVS-S-IQ-------N--EIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       911 ---~~~-~-~~-------~--~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         ..+ . +.       .  ...+.+++.-.-+..|-.+|||++|..+
T Consensus       273 i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~  321 (338)
T KOG0668|consen  273 ILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMA  321 (338)
T ss_pred             HhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHHhc
Confidence               000 0 00       0  0135556666777899999999998763

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.89  E-value=1.6e-23  Score=227.27  Aligned_cols=189  Identities=20%  Similarity=0.312  Sum_probs=157.0

Q ss_pred             cccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc-----cc---cchHHHHHHHHhhcC---CCceeEEeeEEec
Q 002105          684 TEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-----TT---SSFWPDVSQFGKLIM---HPNIVRLHGVCRS  752 (966)
Q Consensus       684 ~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-----~~---~~~~~e~~~~~~~~~---H~niv~l~g~~~~  752 (966)
                      ++..+...|.|+||.|..+.++.+..+|+||.+.+.+-.     ..   -..-.|+..++. ++   |+||+|++++|++
T Consensus       562 ~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~-l~~~sH~NIlKlLdfFEd  640 (772)
T KOG1152|consen  562 DYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILAT-LNKHSHENILKLLDFFED  640 (772)
T ss_pred             cceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHH-hhhcCccchhhhhheeec
Confidence            345566779999999999999989888888877543211     11   123457766666 46   9999999999999


Q ss_pred             CCeeEEEEEc-cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccc
Q 002105          753 EKAAYLVYEY-IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPG  828 (966)
Q Consensus       753 ~~~~~lv~Ey-~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~  828 (966)
                      ++.+||+||- -++-+|.++|.   ++++.+..-|+.||+-|+++||   ..+|||||||-+||++|+++  .+++.|||
T Consensus       641 dd~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh---~~~ivhrdikdenvivd~~g--~~klidfg  715 (772)
T KOG1152|consen  641 DDYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLH---DQGIVHRDIKDENVIVDSNG--FVKLIDFG  715 (772)
T ss_pred             CCeeEEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhcccccc---ccCceecccccccEEEecCC--eEEEeecc
Confidence            9999999996 46779999996   5889999999999999999999   67999999999999999764  57889999


Q ss_pred             cceecCC----CCcCCcccccccccCCCCC-CCcchHHHHHHHHHHHHcCCCCCC
Q 002105          829 LAYCTDS----KSINSSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPAD  878 (966)
Q Consensus       829 ~~~~~~~----~~~~~~~y~aPE~~~~~~~-~~~~Dv~S~Gv~l~el~tg~~p~~  878 (966)
                      .+..+..    ..+||..|.|||++.+.+| +..-|||++||+||.++....||+
T Consensus       716 saa~~ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  716 SAAYTKSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             chhhhcCCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            8765433    3579999999999999988 556899999999999999999985

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=1.4e-24  Score=214.72  Aligned_cols=184  Identities=21%  Similarity=0.379  Sum_probs=151.0

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEecC-----CeeEEEEEc
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE-----KAAYLVYEY  762 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~-----~~~~lv~Ey  762 (966)
                      -+|-|.||.||.+.+-++|+.||.||+...  +-...+.+++|.+.+.- .+|.|+...++..+-.     +++|.|.|.
T Consensus        60 PIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcf-FkHdNVLSaLDILQPph~dfFqEiYV~TEL  138 (449)
T KOG0664|consen   60 PIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSS-FRHDNVLSLLDILQPANPSFFQELYVLTEL  138 (449)
T ss_pred             cccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHh-hccccHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            468889999999999999999999999654  33445678999988887 6999999999877643     356888998


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC----
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS----  835 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~----  835 (966)
                      |. .||.+.+-   .++-+...-+..||.+||.|||   +.+|+||||||.|.|++++  ..+|++|||++...+.    
T Consensus       139 mQ-SDLHKIIVSPQ~Ls~DHvKVFlYQILRGLKYLH---sA~ILHRDIKPGNLLVNSN--CvLKICDFGLARvee~d~~~  212 (449)
T KOG0664|consen  139 MQ-SDLHKIIVSPQALTPDHVKVFVYQILRGLKYLH---TANILHRDIKPGNLLVNSN--CILKICDFGLARTWDQRDRL  212 (449)
T ss_pred             HH-hhhhheeccCCCCCcchhhhhHHHHHhhhHHHh---hcchhhccCCCccEEeccC--ceEEecccccccccchhhhh
Confidence            87 47777663   4777777778899999999999   6699999999999999865  5689999999975332    


Q ss_pred             ---CCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          836 ---KSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       836 ---~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                         ..+-|-.|.|||.+.+ +.|+.+.||||.|||+.|++..+.-|++.
T Consensus       213 hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq  261 (449)
T KOG0664|consen  213 NMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAA  261 (449)
T ss_pred             hhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhcc
Confidence               2234678999999876 56899999999999999999988877654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=7.5e-25  Score=228.03  Aligned_cols=400  Identities=21%  Similarity=0.229  Sum_probs=236.9

Q ss_pred             CcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccC-CCCCCCCCcCccCCCCCCEEEe
Q 002105          157 GLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGY-NNLSGEIPKEIGDLTSLNHLDL  235 (966)
Q Consensus       157 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~L  235 (966)
                      .-..++|..|.|+...|..|+.+++|+.|||+.|+|+.+-|..|..+.+|..|-+.+ |+|+......|++|.+|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            346688888888877777888888888888888888888888888888877766555 7787544456888888888888


Q ss_pred             ecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCc------------ccCchhhcCCCCCc
Q 002105          236 VYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLS------------GEIPEEVIQLQNLE  303 (966)
Q Consensus       236 s~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~------------~~~p~~~~~l~~L~  303 (966)
                      .-|++.-.....|..|++|..|.+..|.+...--..|.++.+++++.+..|.+-            ...|.++++.....
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            888887777777888888888888888876443347778888888888777621            12233444444444


Q ss_pred             eecccCCCCCCCCCCCCCCCCCccEE--EccC-CcCcccCC-ccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEc
Q 002105          304 ILHLFSNNFTGKIPSSLASMPKLQVL--QLWS-NQFSGEIP-SNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLIL  379 (966)
Q Consensus       304 ~L~L~~N~l~~~~p~~l~~l~~L~~L--~L~~-N~l~~~~p-~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l  379 (966)
                      -..+.++++....+..|...  ++.+  .++. +...+..| ..|..+++|+.|+|++|+++++-+.+|....++++|.|
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             hHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence            44555555543333333211  1111  1111 11222333 24667777777777777777777777777777777777


Q ss_pred             cCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccC-cchhccCCCcEecCCCCcCCc
Q 002105          380 FSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIG-EQKWEMTSLQMLNLAGNNFSG  458 (966)
Q Consensus       380 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~  458 (966)
                      ..|++...-...|.++..|+.|+|.+|+|+...|.+|..+..|.+|+|-.|.+.-..- .++..       .|..+.-. 
T Consensus       306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~-------Wlr~~~~~-  377 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE-------WLRKKSVV-  377 (498)
T ss_pred             CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH-------HHhhCCCC-
Confidence            7777766555666667777777777777776666677666666666666665532110 00000       01112211 


Q ss_pred             cCCCCcCccccccccccccccc---ccCCCcccC---------cCCCC-EEEccCCccCCCChhhccccccccccccCCc
Q 002105          459 KLPDSFGSDQLENLDLSENRFS---GTIPRSFGR---------LSELM-QLKISRNKLFGDIPEELSSCKKLVSLDLSNN  525 (966)
Q Consensus       459 ~~p~~~~~~~L~~L~Ls~N~l~---~~~p~~~~~---------l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  525 (966)
                      ..|.......++.++++.+.+.   ...|++.+-         ++-+. +..-|++.+ ..+|..+-  ..-..|++.+|
T Consensus       378 ~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~l-k~lp~~iP--~d~telyl~gn  454 (498)
T KOG4237|consen  378 GNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLL-KLLPRGIP--VDVTELYLDGN  454 (498)
T ss_pred             CCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccch-hhcCCCCC--chhHHHhcccc
Confidence            1222222234555555554432   112222111         11111 112222222 23333221  23456777777


Q ss_pred             eeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCC
Q 002105          526 QLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHN  573 (966)
Q Consensus       526 ~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N  573 (966)
                      .++ .+|.+  .+..| .+|+|+|+++..--..|.+++.|.+|-+|+|
T Consensus       455 ~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  455 AIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            776 55655  45566 6777777777666666777777777777765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.1e-21  Score=232.58  Aligned_cols=265  Identities=28%  Similarity=0.364  Sum_probs=139.8

Q ss_pred             CCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceeccc
Q 002105          229 SLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLF  308 (966)
Q Consensus       229 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  308 (966)
                      .-..|+++.|.++ .+|..+.  ++|+.|++++|+++. +|..   +++|++|++++|+++. +|..   .++|+.|+++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLTS-LPVL---PPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence            3556777777777 4666554  367777777777763 4432   4566666776666663 3321   2455666666


Q ss_pred             CCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCC
Q 002105          309 SNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKI  388 (966)
Q Consensus       309 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~  388 (966)
                      +|.++. +|..   ..+|+.|++++|+++. +|..   .++|+.|+|++|++++ +|.                      
T Consensus       271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~----------------------  319 (788)
T PRK15387        271 SNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA----------------------  319 (788)
T ss_pred             CCchhh-hhhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCC----------------------
Confidence            666552 3322   1345555555555542 3321   2345555555555543 221                      


Q ss_pred             CCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCccCCCCcCccc
Q 002105          389 PNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQ  468 (966)
Q Consensus       389 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  468 (966)
                        .   ..+|+.|++++|++++ +|..   ..+|++|+|++|+|++. |..   ..+|+.|++++|++++ +|..  ..+
T Consensus       320 --l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~l--~~~  383 (788)
T PRK15387        320 --L---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPAL--PSG  383 (788)
T ss_pred             --C---cccccccccccCcccc-cccc---ccccceEecCCCccCCC-CCC---Ccccceehhhcccccc-Cccc--ccc
Confidence              1   1123444445554443 2210   12455555555555532 211   2345555566665553 3332  134


Q ss_pred             ccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCC
Q 002105          469 LENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSE  548 (966)
Q Consensus       469 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~  548 (966)
                      |+.|++++|+|++ +|..   .++|+.|++++|++++ +|..   ..+|+.|++++|+|+ .+|..+..+++|+.|+|++
T Consensus       384 L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~  454 (788)
T PRK15387        384 LKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG  454 (788)
T ss_pred             cceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence            5666666666653 3332   2456666666666653 4443   234566666666666 5666666666666666666


Q ss_pred             CcCcccCCcccc
Q 002105          549 NQLSGKIPQTLG  560 (966)
Q Consensus       549 N~l~g~~p~~l~  560 (966)
                      |+|+|.+|..+.
T Consensus       455 N~Ls~~~~~~L~  466 (788)
T PRK15387        455 NPLSERTLQALR  466 (788)
T ss_pred             CCCCchHHHHHH
Confidence            666666665553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.5e-21  Score=231.50  Aligned_cols=261  Identities=25%  Similarity=0.362  Sum_probs=183.4

Q ss_pred             CCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccC
Q 002105          278 LVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLST  357 (966)
Q Consensus       278 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~  357 (966)
                      -..|++++|.++ .+|..+.  ++|+.|++.+|+++. +|..   .++|++|++++|+++. +|..   ..+|+.|++++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence            334555555554 3444333  245555555555552 3321   3566666666666653 3432   24566667777


Q ss_pred             CcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccC
Q 002105          358 NFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIG  437 (966)
Q Consensus       358 N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~  437 (966)
                      |.++. +|...   .+|..|++++|+++. +|.   ..++|+.|+|++|++++. |..   ...|..|++++|++++ +|
T Consensus       272 N~L~~-Lp~lp---~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-LP  338 (788)
T PRK15387        272 NPLTH-LPALP---SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-LP  338 (788)
T ss_pred             Cchhh-hhhch---hhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC---cccccccccccCcccc-cc
Confidence            76653 33322   356677777777764 343   246799999999999874 332   2468889999999986 44


Q ss_pred             cchhccCCCcEecCCCCcCCccCCCCcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccc
Q 002105          438 EQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKL  517 (966)
Q Consensus       438 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  517 (966)
                      ..   ..+|+.|+|++|+|++ +|..  ..+|+.|++++|.++. +|..   ..+|+.|++++|++++ +|..   .++|
T Consensus       339 ~l---p~~Lq~LdLS~N~Ls~-LP~l--p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L  404 (788)
T PRK15387        339 TL---PSGLQELSVSDNQLAS-LPTL--PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSEL  404 (788)
T ss_pred             cc---ccccceEecCCCccCC-CCCC--Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCC
Confidence            32   2589999999999996 4443  3578899999999985 6654   3579999999999985 5654   3679


Q ss_pred             cccccCCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCcccccCCC
Q 002105          518 VSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPS  581 (966)
Q Consensus       518 ~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~ip~  581 (966)
                      +.|++++|+|++ +|...   .+|+.|++++|+|+ .+|..+.+++.|+.|++++|+|+|.+|.
T Consensus       405 ~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        405 KELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             CEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            999999999985 67643   46889999999998 7899999999999999999999998775

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=5.5e-24  Score=221.64  Aligned_cols=417  Identities=24%  Similarity=0.247  Sum_probs=218.3

Q ss_pred             ccChhhhhcCCCCcEEECCCCCCCC--CCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccC-CCCcccCCcCC
Q 002105          100 EIPSDIFSSSNSLRFLNLSNNNFTG--PVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGG-NVLVGEIPLSI  176 (966)
Q Consensus       100 ~ip~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~  176 (966)
                      +||.++-   ..-..++|..|.|+.  +..|..+.+|+.||||+|.|+.+-|++|..+.+|..|-+-+ |+|+......|
T Consensus        60 eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F  136 (498)
T KOG4237|consen   60 EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF  136 (498)
T ss_pred             cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence            5665431   334556666676664  22256666666666666666666666666666666655544 56654444556


Q ss_pred             CCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeeccccc------------ccC
Q 002105          177 SNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLT------------GQI  244 (966)
Q Consensus       177 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~------------~~~  244 (966)
                      ++|.+|+.|.+.-|++.....+.|..+++|..|.+..|.+...--..|..+..++++.+..|.+-            ...
T Consensus       137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~  216 (498)
T KOG4237|consen  137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN  216 (498)
T ss_pred             hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence            66666666666666666666666666666666666666665322235666666666666665521            122


Q ss_pred             CcCCCCCCccceEeccccccCCCCChhhhc-CCCCCEEEccCCcCcccCc-hhhcCCCCCceecccCCCCCCCCCCCCCC
Q 002105          245 PPSFGNLSNLRYLFLYQNKLTGSIPKSILG-LKSLVSFDLSDNYLSGEIP-EEVIQLQNLEILHLFSNNFTGKIPSSLAS  322 (966)
Q Consensus       245 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  322 (966)
                      |..++...-..-..+.++++....+..|.. +.++..=-.+.+..-+..| ..|..+++|+.|+|++|+++++-+.+|.+
T Consensus       217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~  296 (498)
T KOG4237|consen  217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG  296 (498)
T ss_pred             hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence            233333333333334444443332322221 1111111111111222222 34556666666666666666666666666


Q ss_pred             CCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCC-CccccCccCcee
Q 002105          323 MPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIP-NSLSTCKSLRRV  401 (966)
Q Consensus       323 l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L  401 (966)
                      +.++++|.|..|++...-...|..+..|+.|+|.+|+|+...|..|..+.+|..|.+..|.+--.-- .|++.       
T Consensus       297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~-------  369 (498)
T KOG4237|consen  297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE-------  369 (498)
T ss_pred             hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH-------
Confidence            6666666666666654444556666666666666666666666666555555555555554421000 00000       


Q ss_pred             eccccccCCcCChhhcCCCcccEEcccCCCCCCc---cCcchhccCCCcEecCCCCcCCccCCCCcCcccccc-cccccc
Q 002105          402 RLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGR---IGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLEN-LDLSEN  477 (966)
Q Consensus       402 ~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~-L~Ls~N  477 (966)
                      .|..+.-.|.+|-.  .-..++.++++++.+...   .|+...-            .-++.-|.  ..+-+.+ ..-|++
T Consensus       370 Wlr~~~~~~~~~Cq--~p~~~~~~~~~dv~~~~~~c~~~ee~~~------------~~s~~cP~--~c~c~~tVvRcSnk  433 (498)
T KOG4237|consen  370 WLRKKSVVGNPRCQ--SPGFVRQIPISDVAFGDFRCGGPEELGC------------LTSSPCPP--PCTCLDTVVRCSNK  433 (498)
T ss_pred             HHhhCCCCCCCCCC--CCchhccccchhccccccccCCccccCC------------CCCCCCCC--CcchhhhhHhhccc
Confidence            01111111111110  011223333443333211   1110000            00001111  1112222 223444


Q ss_pred             cccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCC
Q 002105          478 RFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSEN  549 (966)
Q Consensus       478 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N  549 (966)
                      .+. .+|+.+.  ..-.+|++.+|.++ .+|.+  .+++| .+|+|+|+++..--..|.++++|.+|-||+|
T Consensus       434 ~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  434 LLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             chh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            333 3444332  24467889999987 67776  67788 8999999999888889999999999999987

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.86  E-value=6.4e-21  Score=203.88  Aligned_cols=130  Identities=14%  Similarity=0.241  Sum_probs=104.1

Q ss_pred             ccccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcC----C---CceeEEeeEEec---
Q 002105          683 TTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM----H---PNIVRLHGVCRS---  752 (966)
Q Consensus       683 ~~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~----H---~niv~l~g~~~~---  752 (966)
                      ..+-.....|=|.|++||.+.+..+.+.||+|...... .-.+..+.|+..+.+.-.    |   .+||+|+++|..   
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAq-hYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGp  156 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQ-HYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGP  156 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhh-HHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCC
Confidence            33455667788999999999999899999999765433 233456778877766322    2   369999999975   


Q ss_pred             -CCeeEEEEEccCCCCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcC
Q 002105          753 -EKAAYLVYEYIEGKELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDG  816 (966)
Q Consensus       753 -~~~~~lv~Ey~~~g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~  816 (966)
                       +.++++|+||+. .+|..+|+     .++.....+|+.||..||.|||..|  +|||-||||+|||+..
T Consensus       157 NG~HVCMVfEvLG-dnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl~~  223 (590)
T KOG1290|consen  157 NGQHVCMVFEVLG-DNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLLCS  223 (590)
T ss_pred             CCcEEEEEehhhh-hHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeeeec
Confidence             457999999984 67888885     4889999999999999999999977  8999999999999853

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.85  E-value=2.2e-21  Score=205.33  Aligned_cols=189  Identities=24%  Similarity=0.334  Sum_probs=156.0

Q ss_pred             ccccCCCCCccEEEEEEEec---CCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLA---NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~---~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .+..+|.|.|++||++....   .+..||+|.+.....  ......|.+.+..+.-|.||+++.+++..++...+|+||+
T Consensus        40 ~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~--p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~ivlp~~  117 (418)
T KOG1167|consen   40 VVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS--PSRILNELEMLYRLGGSDNIIKLNGCFRNNDQVAIVLPYF  117 (418)
T ss_pred             hhccccccchhhhhhhhHhhhccccceEeeeecccccC--chHHHHHHHHHHHhccchhhhcchhhhccCCeeEEEeccc
Confidence            34557888999999999876   678999999866543  3447788888888778999999999999999999999999


Q ss_pred             CCCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee-----------
Q 002105          764 EGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC-----------  832 (966)
Q Consensus       764 ~~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~-----------  832 (966)
                      ++-+..++...++..+...+...+..||+|+|   ..|||||||||+|+|.+... .+-.+.|||++..           
T Consensus       118 ~H~~f~~l~~~l~~~~i~~Yl~~ll~Al~~~h---~~GIvHRDiKpsNFL~n~~t-~rg~LvDFgLA~~~d~~~~~~~s~  193 (418)
T KOG1167|consen  118 EHDRFRDLYRSLSLAEIRWYLRNLLKALAHLH---KNGIVHRDIKPSNFLYNRRT-QRGVLVDFGLAQRYDGYQQTEHSR  193 (418)
T ss_pred             CccCHHHHHhcCCHHHHHHHHHHHHHHhhhhh---ccCccccCCCcccccccccc-CCceEEechhHHHHHhhhhhhhhh
Confidence            99999999999999999999999999999999   67999999999999987432 2334666766530           


Q ss_pred             c---------------------------------C------CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHc
Q 002105          833 T---------------------------------D------SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLT  872 (966)
Q Consensus       833 ~---------------------------------~------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~t  872 (966)
                      .                                 +      ....||+||.|||++.. ..-++++||||-|||++-+++
T Consensus       194 ~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls  273 (418)
T KOG1167|consen  194 SYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLS  273 (418)
T ss_pred             hhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceeeccceeehhhc
Confidence            0                                 0      01258999999998764 456889999999999999999


Q ss_pred             CCCCCCCCC
Q 002105          873 GKSPADADF  881 (966)
Q Consensus       873 g~~p~~~~~  881 (966)
                      ++.||....
T Consensus       274 ~~~PFf~a~  282 (418)
T KOG1167|consen  274 RRYPFFKAK  282 (418)
T ss_pred             cccccccCc
Confidence            999986433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.84  E-value=8.6e-21  Score=226.83  Aligned_cols=263  Identities=24%  Similarity=0.417  Sum_probs=143.4

Q ss_pred             CCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCC
Q 002105          111 SLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASN  190 (966)
Q Consensus       111 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n  190 (966)
                      +.+.|+++++.++. +|..-..+|+.|+|++|+++. +|..+.  .+|++|++++|.++ .+|..+.  .+|+.|+|++|
T Consensus       179 ~~~~L~L~~~~Lts-LP~~Ip~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N  251 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACIPEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSIN  251 (754)
T ss_pred             CceEEEeCCCCcCc-CCcccccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCC
Confidence            34555555555552 222222455566666666552 343332  35666666666555 3344332  35666666666


Q ss_pred             CCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCCh
Q 002105          191 QLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPK  270 (966)
Q Consensus       191 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~  270 (966)
                      ++. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|+++. +|.
T Consensus       252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~  321 (754)
T PRK15370        252 RIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPE  321 (754)
T ss_pred             ccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCc
Confidence            655 3444443  35666666666665 3455443  356666666666663 443332  356666666666653 343


Q ss_pred             hhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCC
Q 002105          271 SILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNL  350 (966)
Q Consensus       271 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L  350 (966)
                      .+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+.  ..|
T Consensus       322 ~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL  390 (754)
T PRK15370        322 TLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AAL  390 (754)
T ss_pred             ccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHH
Confidence            332  466666666666664 444442  56777777777666 3454442  46777777777776 3454443  256


Q ss_pred             cEEEccCCcccccCCCCc----cCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccC
Q 002105          351 TVIDLSTNFLTGKIPETL----CDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLS  409 (966)
Q Consensus       351 ~~L~Ls~N~l~~~~p~~~----~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  409 (966)
                      +.|++++|+|+ .+|..+    ...+.+..+++.+|.++.      ..+.+|+.| ++.+.+.
T Consensus       391 ~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~  445 (754)
T PRK15370        391 QIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQ  445 (754)
T ss_pred             HHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhccccc
Confidence            77777777776 344433    334566777777777652      344555555 3344443

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.84  E-value=2.3e-21  Score=207.83  Aligned_cols=198  Identities=25%  Similarity=0.277  Sum_probs=159.0

Q ss_pred             HHHHHhhccccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhc-----CCCceeEEeeEE
Q 002105          676 IDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLI-----MHPNIVRLHGVC  750 (966)
Q Consensus       676 ~~~~~~~~~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~-----~H~niv~l~g~~  750 (966)
                      +.|++.. .+......|+|-|+.|.+|++...|..||||.+.... ...+.=..|++.+.++-     .--|+++|+-+|
T Consensus       426 igE~LD~-RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE-~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F  503 (752)
T KOG0670|consen  426 IGELLDS-RYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNE-VMHKTGLKELEILKKLNDADPEDKFHCLRLFRHF  503 (752)
T ss_pred             hhhhhcc-eeEEEeccccceeeeeeeccccCCCCeeEEEEeecch-HHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHh
Confidence            3444332 3445556799999999999999999999999875443 33445577888887752     134789999999


Q ss_pred             ecCCeeEEEEEccCCCCHHHHHHc------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEE
Q 002105          751 RSEKAAYLVYEYIEGKELSEVLRN------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRL  824 (966)
Q Consensus       751 ~~~~~~~lv~Ey~~~g~L~~~l~~------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~  824 (966)
                      ...++++||+|-+. -+|.++|+.      |.......++.|+.-||..|-   ..+|+|.||||.|||+++. ...+|+
T Consensus       504 ~hknHLClVFE~Ls-lNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK---~c~vlHaDIKPDNiLVNE~-k~iLKL  578 (752)
T KOG0670|consen  504 KHKNHLCLVFEPLS-LNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLK---KCGVLHADIKPDNILVNES-KNILKL  578 (752)
T ss_pred             hhcceeEEEehhhh-chHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHH---hcCeeecccCccceEeccC-cceeee
Confidence            99999999999765 689999974      667788899999999999998   5599999999999999975 446899


Q ss_pred             eccccceecCCCCc----CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          825 SVPGLAYCTDSKSI----NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       825 ~~~~~~~~~~~~~~----~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                      +|||-|.......+    -+..|.|||++.+-+|+...|+||.||+|||+.||+.-|.+.
T Consensus       579 CDfGSA~~~~eneitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~  638 (752)
T KOG0670|consen  579 CDFGSASFASENEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGR  638 (752)
T ss_pred             ccCccccccccccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCC
Confidence            99998865433322    234699999999999999999999999999999999887654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=5.4e-20  Score=220.03  Aligned_cols=281  Identities=23%  Similarity=0.385  Sum_probs=188.0

Q ss_pred             CCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEcc
Q 002105           85 PHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLG  164 (966)
Q Consensus        85 ~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  164 (966)
                      .+...|+++++.++ .+|..+.   +.|+.|+|++|.|+. +|.....+|++|+|++|+++ .+|..+.  .+|+.|+|+
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lts-LP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP---EQITTLILDNNELKS-LPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCCc-CChhhccCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            35677888888877 5776442   568888888888873 44444467888888888887 3565443  468888888


Q ss_pred             CCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccC
Q 002105          165 GNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQI  244 (966)
Q Consensus       165 ~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  244 (966)
                      +|.+. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|+++. +
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L  319 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L  319 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence            88876 5666554  47888888888887 4666554  478888888888874 555443  467888888888874 5


Q ss_pred             CcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCC
Q 002105          245 PPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMP  324 (966)
Q Consensus       245 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  324 (966)
                      |..+.  ++|++|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++. +|..+.  .
T Consensus       320 P~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~  388 (754)
T PRK15370        320 PETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--A  388 (754)
T ss_pred             Ccccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--H
Confidence            54442  578888888888875 565553  67888888888887 4565553  578888888888874 555443  3


Q ss_pred             CccEEEccCCcCcccCCcc----ccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCC-CCCccccCccCc
Q 002105          325 KLQVLQLWSNQFSGEIPSN----LGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGK-IPNSLSTCKSLR  399 (966)
Q Consensus       325 ~L~~L~L~~N~l~~~~p~~----~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~-~p~~~~~l~~L~  399 (966)
                      .|+.|++++|++. .+|..    ++.++++..|++.+|.++.      ..+.+|+.| ++.+.+.|. ++..+....+++
T Consensus       389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp~i~~~~~~~~~l~  460 (754)
T PRK15370        389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGPRVLFAMGDFSIVR  460 (754)
T ss_pred             HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccCCccccccccccccc
Confidence            6888888888887 44543    3445778888888888762      233344444 334444442 333444444444


Q ss_pred             eee
Q 002105          400 RVR  402 (966)
Q Consensus       400 ~L~  402 (966)
                      ...
T Consensus       461 ~~~  463 (754)
T PRK15370        461 VTR  463 (754)
T ss_pred             ccc
Confidence            433

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.78  E-value=1.2e-18  Score=192.18  Aligned_cols=153  Identities=14%  Similarity=0.092  Sum_probs=113.1

Q ss_pred             cccccCCCCCccEEEEEEEec-CCcEEEEEEEeccC-----cccccchHHHHHHHHhhcCCCceeE-EeeEEecCCeeEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLA-NDMQFVVKKIIDVN-----TITTSSFWPDVSQFGKLIMHPNIVR-LHGVCRSEKAAYL  758 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~-~~~~vavk~~~~~~-----~~~~~~~~~e~~~~~~~~~H~niv~-l~g~~~~~~~~~l  758 (966)
                      .....+|+|+||.||+|+... ++..||||++....     ....+.|.+|+..+.+ ++|+|||+ ++++    +..|+
T Consensus        21 ~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~-L~h~~iv~~l~~~----~~~~L   95 (365)
T PRK09188         21 VETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKT-VRGIGVVPQLLAT----GKDGL   95 (365)
T ss_pred             eEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHh-ccCCCCCcEEEEc----CCcEE
Confidence            344457999999999998865 67778999875321     1123347788888877 69999985 5442    45799


Q ss_pred             EEEccCCCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecC-CCCcEEEcCCCCceEEEeccccceecCC--
Q 002105          759 VYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDV-SPGKVIVDGKDEPHLRLSVPGLAYCTDS--  835 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDl-k~~Nill~~~~~~~~~~~~~~~~~~~~~--  835 (966)
                      |||||+|++|... ...   ....++.++++||+|||   +.+|+|||| ||+|||++.+.  .+++.|||++.....  
T Consensus        96 VmE~~~G~~L~~~-~~~---~~~~~~~~i~~aL~~lH---~~gIiHrDL~KP~NILv~~~~--~ikLiDFGlA~~~~~~~  166 (365)
T PRK09188         96 VRGWTEGVPLHLA-RPH---GDPAWFRSAHRALRDLH---RAGITHNDLAKPQNWLMGPDG--EAAVIDFQLASVFRRRG  166 (365)
T ss_pred             EEEccCCCCHHHh-Ccc---chHHHHHHHHHHHHHHH---HCCCeeCCCCCcceEEEcCCC--CEEEEECccceecccCc
Confidence            9999999999732 211   12567889999999999   569999999 99999998654  578999999864221  


Q ss_pred             ------------CCcCCcccccccccCCC
Q 002105          836 ------------KSINSSAYVAPETKESK  852 (966)
Q Consensus       836 ------------~~~~~~~y~aPE~~~~~  852 (966)
                                  ...+++.|+|||++...
T Consensus       167 ~~~~~~~~~d~~~~~~~~~~~~pe~~~~~  195 (365)
T PRK09188        167 ALYRIAAYEDLRHLLKHKRTYAPDALTPR  195 (365)
T ss_pred             chhhhhhhhhhhhhhccCccCCcccCChh
Confidence                        22456779999987543

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.77  E-value=2.8e-17  Score=183.08  Aligned_cols=242  Identities=24%  Similarity=0.340  Sum_probs=176.4

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCccc---ccchHHHHHHHHhhcCCC-ceeEEeeEEecCCeeEEEEEccCC
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---TSSFWPDVSQFGKLIMHP-NIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---~~~~~~e~~~~~~~~~H~-niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .+|.|+++.||++...   ..+|+|.+.......   ...|.+|+..+.+ +.|+ +|+++++++......++++||+.+
T Consensus         7 ~l~~g~~~~v~~~~~~---~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   82 (384)
T COG0515           7 KLGEGSFGEVYLARDR---KLVALKVLAKKLESKSKEVERFLREIQILAS-LNHPPNIVKLYDFFQDEGSLYLVMEYVDG   82 (384)
T ss_pred             eecCCCCeEEEEEEec---cEEEEEeechhhccchhHHHHHHHHHHHHHH-ccCCcceeeEEEEEecCCEEEEEEecCCC
Confidence            4568888999999974   778888886543332   4567888877777 5777 799999999877778999999999


Q ss_pred             CCHHHHHH------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------
Q 002105          766 KELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------  833 (966)
Q Consensus       766 g~L~~~l~------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------  833 (966)
                      +++.+++.      .+.......+..+++.++.|+|   ..+++|||+||+||+++.... .+++.|||.+...      
T Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H---~~~~~hrd~kp~nil~~~~~~-~~~l~dfg~~~~~~~~~~~  158 (384)
T COG0515          83 GSLEDLLKKIGRKGPLSESEALFILAQILSALEYLH---SKGIIHRDIKPENILLDRDGR-VVKLIDFGLAKLLPDPGST  158 (384)
T ss_pred             CcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeecCCCC-eEEEeccCcceecCCCCcc
Confidence            99998876      4777888999999999999999   557999999999999996542 5688899976531      


Q ss_pred             ------CCCCcCCcccccccccCC---CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc--hhhHHHHHHHhhccCcccc
Q 002105          834 ------DSKSINSSAYVAPETKES---KDITEKGDIYGFGLILIDLLTGKSPADADFGV--HESIVEWARYCYSDCHLDT  902 (966)
Q Consensus       834 ------~~~~~~~~~y~aPE~~~~---~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~  902 (966)
                            .....++..|+|||...+   ..++...|+||+|++++++++|..|+......  .....+........ ... 
T Consensus       159 ~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~-  236 (384)
T COG0515         159 SSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTP-SLA-  236 (384)
T ss_pred             ccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCCc-ccc-
Confidence                  134568899999999987   57888999999999999999999997654321  11221222111101 000 


Q ss_pred             cccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          903 WVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       903 ~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                         +.......  ......+.++...|+..+|..|.++.+....
T Consensus       237 ---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  275 (384)
T COG0515         237 ---SPLSPSNP--ELISKAASDLLKKLLAKDPKNRLSSSSDLSH  275 (384)
T ss_pred             ---cccCcccc--chhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence               00000000  1112355667778889999999998876653

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.73  E-value=1.7e-17  Score=185.76  Aligned_cols=202  Identities=23%  Similarity=0.335  Sum_probs=151.1

Q ss_pred             cCCCceeEEeeEEecCCeeEEEEEccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEE
Q 002105          738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI  813 (966)
Q Consensus       738 ~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nil  813 (966)
                      +.|.|+.+++|.+..+...++|.+||..|+|.+.+.    +++|.-...+..+|+.||+|+|..  +--.|+.++++|.+
T Consensus         4 l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~s--~i~~hg~l~s~nCl   81 (484)
T KOG1023|consen    4 LDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHNS--PIGYHGALKSSNCL   81 (484)
T ss_pred             cchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhcC--cceeeeeeccccce
Confidence            689999999999999999999999999999999996    488999999999999999999953  33399999999999


Q ss_pred             EcCCCCceEEEeccccceecCC----C----CcCCcccccccccCCC-------CCCCcchHHHHHHHHHHHHcCCCCCC
Q 002105          814 VDGKDEPHLRLSVPGLAYCTDS----K----SINSSAYVAPETKESK-------DITEKGDIYGFGLILIDLLTGKSPAD  878 (966)
Q Consensus       814 l~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~y~aPE~~~~~-------~~~~~~Dv~S~Gv~l~el~tg~~p~~  878 (966)
                      +|..  -.+|+.++|+......    .    .....-|.|||.+...       ..+.++||||||++++|+++.+.||+
T Consensus        82 vd~~--w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~  159 (484)
T KOG1023|consen   82 VDSR--WVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFD  159 (484)
T ss_pred             eeee--EEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCccc
Confidence            9964  4578899998654321    0    0112359999987653       14678999999999999999999998


Q ss_pred             CCCCch--hhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          879 ADFGVH--ESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       879 ~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      ......  +.++.+++.     .......|.+...    .+...++..++..||..+|++||++++|-..++.+.+
T Consensus       160 ~~~~~~~~~eii~~~~~-----~~~~~~rP~i~~~----~e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~  226 (484)
T KOG1023|consen  160 LRNLVEDPDEIILRVKK-----GGSNPFRPSIELL----NELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTINK  226 (484)
T ss_pred             cccccCChHHHHHHHHh-----cCCCCcCcchhhh----hhcchHHHHHHHHhcccChhhCccHHHHHhhhhhhcc
Confidence            643322  222233222     0111123333211    1122257788899999999999999999999987444

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.70  E-value=1.9e-17  Score=169.43  Aligned_cols=166  Identities=18%  Similarity=0.228  Sum_probs=121.7

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccc---------hHHHHHHHHhhcCCCceeEEeeEEecC--
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSS---------FWPDVSQFGKLIMHPNIVRLHGVCRSE--  753 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~---------~~~e~~~~~~~~~H~niv~l~g~~~~~--  753 (966)
                      +..+...|.||+|.||.+..  ++..+|+|.+.+......+.         |.+|+..+.+ ++||+|....+++...  
T Consensus        33 y~~~~~l~~~~f~~v~l~~~--~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~r-L~~~GI~~~~d~~~~~~~  109 (232)
T PRK10359         33 IKTIKVFRNIDDTKVSLIDT--DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDR-VRSEGLASLNDFYLLAER  109 (232)
T ss_pred             eEEEEEecCCCceEEEEEec--CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHH-HHHCCCCcceEeeeeccc
Confidence            44555678999999998654  56689999886543332222         5677777888 5999999999886533  


Q ss_pred             ------CeeEEEEEccCCCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecc
Q 002105          754 ------KAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP  827 (966)
Q Consensus       754 ------~~~~lv~Ey~~~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~  827 (966)
                            +..+|||||++|.+|.++.. ++.    ....+++.+++.+|   ..+++|||+||+||+++.++   +++.||
T Consensus       110 ~~~~~~~~~~lvmEyi~G~tL~~~~~-~~~----~~~~~i~~~l~~lH---~~gi~H~Dikp~Nili~~~g---i~liDf  178 (232)
T PRK10359        110 KTLRYAHTYIMLIEYIEGVELNDMPE-ISE----DVKAKIKASIESLH---QHGMVSGDPHKGNFIVSKNG---LRIIDL  178 (232)
T ss_pred             ccccccCCeEEEEEEECCccHHHhhh-ccH----HHHHHHHHHHHHHH---HcCCccCCCChHHEEEeCCC---EEEEEC
Confidence                  35799999999999988742 222    34568999999999   56999999999999998654   788898


Q ss_pred             ccceecCCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHH
Q 002105          828 GLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDL  870 (966)
Q Consensus       828 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el  870 (966)
                      |..........      ...+.....|+.++|||||||++.-.
T Consensus       179 g~~~~~~e~~a------~d~~vler~y~~~~di~~lg~~~~~~  215 (232)
T PRK10359        179 SGKRCTAQRKA------KDRIDLERHYGIKNEIKDLGYYLLIY  215 (232)
T ss_pred             CCcccccchhh------HHHHHHHhHhcccccccceeEeehHH
Confidence            87643321110      01134455677899999999988654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=6.3e-19  Score=196.18  Aligned_cols=215  Identities=24%  Similarity=0.304  Sum_probs=109.2

Q ss_pred             cccccCCcceEEEccCCCCCCCCCcCccCCCC---CCEEEeecccccc----cCCcCCCCC-CccceEeccccccCCC--
Q 002105          198 REIGQLRNLKWIYLGYNNLSGEIPKEIGDLTS---LNHLDLVYNNLTG----QIPPSFGNL-SNLRYLFLYQNKLTGS--  267 (966)
Q Consensus       198 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~----~~p~~~~~l-~~L~~L~L~~n~l~~~--  267 (966)
                      ..+..+++|+.|++++|.+.+..+..+..+.+   |++|++++|++++    .+...+..+ ++|+.|++++|.+++.  
T Consensus        75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  154 (319)
T cd00116          75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC  154 (319)
T ss_pred             HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence            34445556666666666665444444433333   6666666666552    122233444 5666666666666532  


Q ss_pred             --CChhhhcCCCCCEEEccCCcCccc----CchhhcCCCCCceecccCCCCCCC----CCCCCCCCCCccEEEccCCcCc
Q 002105          268 --IPKSILGLKSLVSFDLSDNYLSGE----IPEEVIQLQNLEILHLFSNNFTGK----IPSSLASMPKLQVLQLWSNQFS  337 (966)
Q Consensus       268 --~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~  337 (966)
                        ++..+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++.    +...+..+++|++|++++|.++
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence              223344555666666666666532    222333445566666666655422    1223344555555555555554


Q ss_pred             ccCCcccc-----CCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCc-
Q 002105          338 GEIPSNLG-----KQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGE-  411 (966)
Q Consensus       338 ~~~p~~~~-----~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-  411 (966)
                      +.....+.     ....|+.|++++|.++..-.                    ..+...+..+++|+++++++|.++.. 
T Consensus       235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~--------------------~~l~~~~~~~~~L~~l~l~~N~l~~~~  294 (319)
T cd00116         235 DAGAAALASALLSPNISLLTLSLSCNDITDDGA--------------------KDLAEVLAEKESLLELDLRGNKFGEEG  294 (319)
T ss_pred             hHHHHHHHHHHhccCCCceEEEccCCCCCcHHH--------------------HHHHHHHhcCCCccEEECCCCCCcHHH
Confidence            32111111     12344444444444431000                    11222344456777888888877754 


Q ss_pred             ---CChhhcCC-CcccEEcccCCCC
Q 002105          412 ---LSSEFTRL-PLVYFLDISGNDL  432 (966)
Q Consensus       412 ---~~~~~~~l-~~L~~LdLs~N~l  432 (966)
                         ....+... +.++.+|+.+|.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         295 AQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHHHhhcCCchhhcccCCCCC
Confidence               33444444 6788888877753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=4.8e-19  Score=197.15  Aligned_cols=239  Identities=24%  Similarity=0.297  Sum_probs=134.4

Q ss_pred             ccccCCcceEEEccCCCCCC------CCCcCccCCCCCCEEEeecccccccCCcCCCCCCc---cceEeccccccCC---
Q 002105          199 EIGQLRNLKWIYLGYNNLSG------EIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSN---LRYLFLYQNKLTG---  266 (966)
Q Consensus       199 ~l~~l~~L~~L~L~~N~l~~------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~L~~n~l~~---  266 (966)
                      .+...++|++|+++.+.+.+      .++..+.++++|+.|++++|.+.+..+..+..+.+   |++|++++|++++   
T Consensus        46 ~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~  125 (319)
T cd00116          46 ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL  125 (319)
T ss_pred             HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH
Confidence            33444555555555555431      22344566777777777777776555554444444   7777777777653   


Q ss_pred             -CCChhhhcC-CCCCEEEccCCcCccc----CchhhcCCCCCceecccCCCCCCC----CCCCCCCCCCccEEEccCCcC
Q 002105          267 -SIPKSILGL-KSLVSFDLSDNYLSGE----IPEEVIQLQNLEILHLFSNNFTGK----IPSSLASMPKLQVLQLWSNQF  336 (966)
Q Consensus       267 -~~p~~l~~l-~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l  336 (966)
                       .+...+..+ ++|+.|++++|.+++.    ++..+..+.+|+.|++++|.+++.    ++..+..+++|+.|++++|.+
T Consensus       126 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         126 RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence             122334445 6677777777776632    223344455666666666665531    122233344566666666555


Q ss_pred             ccc----CCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCC--
Q 002105          337 SGE----IPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSG--  410 (966)
Q Consensus       337 ~~~----~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--  410 (966)
                      .+.    +...+..+++|+.|++++|.+++.....+..                   ......+.|++|++++|.++.  
T Consensus       206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~-------------------~~~~~~~~L~~L~l~~n~i~~~~  266 (319)
T cd00116         206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS-------------------ALLSPNISLLTLSLSCNDITDDG  266 (319)
T ss_pred             ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHH-------------------HHhccCCCceEEEccCCCCCcHH
Confidence            422    1222334444555555555444211110000                   000124689999999998872  


Q ss_pred             --cCChhhcCCCcccEEcccCCCCCCc----cCcchhcc-CCCcEecCCCCcC
Q 002105          411 --ELSSEFTRLPLVYFLDISGNDLSGR----IGEQKWEM-TSLQMLNLAGNNF  456 (966)
Q Consensus       411 --~~~~~~~~l~~L~~LdLs~N~l~~~----~~~~~~~l-~~L~~L~Ls~N~l  456 (966)
                        .+...+..+++|+++|+++|.++..    ....+... +.|+.|++.+|.+
T Consensus       267 ~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         267 AKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence              2345566778999999999999865    33333334 6899999988864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=1.2e-17  Score=196.40  Aligned_cols=241  Identities=19%  Similarity=0.231  Sum_probs=162.9

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEecc--Ccccccch----HHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSF----WPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~----~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      .+.+.|.+|  .|+.+........++.|+....  .......+    ..|. .+...++|||++..+..+.+....+-+|
T Consensus       324 ~~~g~ga~g--~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~-~i~~~l~h~~~~e~l~~~~~~~~~~~~m  400 (601)
T KOG0590|consen  324 RVLGSGAYG--SVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEF-CIGSSLSHPNIIETLDIVQEIDGILQSM  400 (601)
T ss_pred             ceeeecccC--ceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhhe-eecccccCCchhhhHHHHhhcccchhhh
Confidence            344444444  4666666555555555543211  11111111    2222 2333479999999888887777666679


Q ss_pred             EccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----
Q 002105          761 EYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----  833 (966)
Q Consensus       761 Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----  833 (966)
                      |||++ ||...+..   +...++..+..|+..|++|+|   ..+|.|||+|++|++++.++  .+|+.|||.+...    
T Consensus       401 E~~~~-Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h---~~GiahrdlK~enll~~~~g--~lki~Dfg~~~vf~~~~  474 (601)
T KOG0590|consen  401 EYCPY-DLFSLVMSNGKLTPLEADCFFKQLLRGVKYLH---SMGLAHRDLKLENLLVTENG--ILKIIDFGAASVFRYPW  474 (601)
T ss_pred             hcccH-HHHHHHhcccccchhhhhHHHHHHHHHHHHHH---hcCceeccCccccEEEecCC--ceEEeecCcceeeccCc
Confidence            99999 99998864   777888899999999999999   56999999999999999765  5788899886531    


Q ss_pred             ------CCCCcCCcccccccccCCCCCCC-cchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccc
Q 002105          834 ------DSKSINSSAYVAPETKESKDITE-KGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDP  906 (966)
Q Consensus       834 ------~~~~~~~~~y~aPE~~~~~~~~~-~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  906 (966)
                            ....+|+..|+|||...+..|+. ..||||.||++..|++|+.|+..........   ....+.+ .    .. 
T Consensus       475 e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~---~~~~~~~-~----~~-  545 (601)
T KOG0590|consen  475 EKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSF---KTNNYSD-Q----RN-  545 (601)
T ss_pred             chhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccch---hhhcccc-c----cc-
Confidence                  23457889999999999999976 6799999999999999999986432221110   0000000 0    00 


Q ss_pred             cccCCCcch-HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          907 FIRGHVSSI-QNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       907 ~~~~~~~~~-~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                       +...+..+ .....+...++.+-++.+|.+|-||++|++.
T Consensus       546 -~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~d  585 (601)
T KOG0590|consen  546 -IFEGPNRLLSLLPRETRIIIYRMLQLDPTKRITIEQILND  585 (601)
T ss_pred             -cccChHHHHHhchhhHHHHHHHHccCChhheecHHHHhhC
Confidence             00011111 1223445667788899999999999999863

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=6.6e-19  Score=163.48  Aligned_cols=166  Identities=33%  Similarity=0.619  Sum_probs=109.7

Q ss_pred             ccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCE
Q 002105           81 IFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKV  160 (966)
Q Consensus        81 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  160 (966)
                      ++++.+.+.|.||+|+++ .+|+.+..                       +.+|+.|++++|+++ .+|..++++++|+.
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~-----------------------l~nlevln~~nnqie-~lp~~issl~klr~   83 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAE-----------------------LKNLEVLNLSNNQIE-ELPTSISSLPKLRI   83 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHH-----------------------hhhhhhhhcccchhh-hcChhhhhchhhhh
Confidence            455666777777777776 56665433                       344555555555554 45666666666666


Q ss_pred             EEccCCCCcccCCcCCCCCCCCCEEEccCCCCc-ccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeeccc
Q 002105          161 LDLGGNVLVGEIPLSISNITSLQIFTLASNQLI-GSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNN  239 (966)
Q Consensus       161 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  239 (966)
                      |+++.|++. ..|..|+.++.|++|||.+|++. ..+|..|..++.|+.|+|+.|.+. .+|..++++++|+.|.+..|.
T Consensus        84 lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd  161 (264)
T KOG0617|consen   84 LNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND  161 (264)
T ss_pred             eecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence            666666654 56666777777777777766664 356667777777777777777775 667777777777777777777


Q ss_pred             ccccCCcCCCCCCccceEeccccccCCCCChhhhcC
Q 002105          240 LTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGL  275 (966)
Q Consensus       240 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  275 (966)
                      +- .+|..++.++.|++|++.+|+++ .+|..++++
T Consensus       162 ll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  162 LL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             hh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence            65 46777777777777777777776 455555443

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.68  E-value=5.8e-15  Score=163.75  Aligned_cols=251  Identities=18%  Similarity=0.175  Sum_probs=176.4

Q ss_pred             cccccCCCCCccEEEEEEEecCC-cEEEEEEEeccCcccccchHHHHHHHHhhcC---CCceeEEeeEE-ecCCeeEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLAND-MQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHGVC-RSEKAAYLVY  760 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~-~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~---H~niv~l~g~~-~~~~~~~lv~  760 (966)
                      .....+|+||||.||.+.....+ ..+|+|............+..|...+..+-.   -+++.++++.. ..++..|+||
T Consensus        21 ~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~iVM  100 (322)
T KOG1164|consen   21 KLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFIVM  100 (322)
T ss_pred             EEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEEEE
Confidence            34556799999999999986554 4566665544433333356677776666421   25899999988 5788899999


Q ss_pred             EccCCCCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC-C--ceEEEeccccce-
Q 002105          761 EYIEGKELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-E--PHLRLSVPGLAY-  831 (966)
Q Consensus       761 Ey~~~g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~-~--~~~~~~~~~~~~-  831 (966)
                      +.+ |-+|.++.+     .++-.+..+|+.|+..+|+++|   +.++|||||||+|+.+.... .  ..+.+.|||++. 
T Consensus       101 ~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH---~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~  176 (322)
T KOG1164|consen  101 SLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLH---SKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARR  176 (322)
T ss_pred             ecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHH---hcCcccCCcCHHHeeecCCCCcccceEEEEecCCCcc
Confidence            976 579998773     4788899999999999999999   66999999999999998653 2  456789999987 


Q ss_pred             -e----c----------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhc
Q 002105          832 -C----T----------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYS  896 (966)
Q Consensus       832 -~----~----------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~  896 (966)
                       .    .          .....||..|+++....+...+.+.|+||++-++.|+..|..|+........ ..+.......
T Consensus       177 ~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~-~~~~~~~~~~  255 (322)
T KOG1164|consen  177 FKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDL-KSKFEKDPRK  255 (322)
T ss_pred             ccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccch-HHHHHHHhhh
Confidence             2    0          0123489999999999999999999999999999999999999865322111 1111111100


Q ss_pred             cCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          897 DCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       897 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                       ..    ..+ .   ......++.++   +..+-..+..++|....+...++.....
T Consensus       256 -~~----~~~-~---~~~~~~~~~~~---~~~~~~~~~~~~Pdy~~~~~~l~~~~~~  300 (322)
T KOG1164|consen  256 -LL----TDR-F---GDLKPEEFAKI---LEYIDSLDYEDKPDYEKLAELLKDVFDS  300 (322)
T ss_pred             -hc----ccc-c---cCCChHHHHHH---HHHhhccCCcCCCCHHHHHHHHHHHHHh
Confidence             00    110 0   00112333333   3344457899999999999998875554

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.67  E-value=3e-16  Score=159.31  Aligned_cols=135  Identities=15%  Similarity=0.167  Sum_probs=98.5

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcc--c-------ccchH-----------------HHHHHHHhhcCCCce
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--T-------TSSFW-----------------PDVSQFGKLIMHPNI  743 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--~-------~~~~~-----------------~e~~~~~~~~~H~ni  743 (966)
                      .+|.|++|.||+|.. .+|..||||++......  .       ...|.                 .|...+.+ +.|+++
T Consensus         4 ~ig~G~~~~Vy~a~~-~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~~~~v   81 (190)
T cd05147           4 CISTGKEANVYHATT-ANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKR-LVTAGI   81 (190)
T ss_pred             ccccccceEEEEEEC-CCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHH-HHHCCC
Confidence            468999999999998 48999999998643211  1       11221                 26666666 466665


Q ss_pred             eEEeeEEecCCeeEEEEEccCCCCHHHH-HH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCc
Q 002105          744 VRLHGVCRSEKAAYLVYEYIEGKELSEV-LR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEP  820 (966)
Q Consensus       744 v~l~g~~~~~~~~~lv~Ey~~~g~L~~~-l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~  820 (966)
                      .....+...  ..+|||||++++++... +.  .+++.+..+++.|++.+|+|+|+  ..+|+||||||+||++++   .
T Consensus        82 ~~p~~~~~~--~~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~l~H--~~giiHrDlkP~NIli~~---~  154 (190)
T cd05147          82 PCPEPILLK--SHVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQ--DCRLVHADLSEYNLLYHD---G  154 (190)
T ss_pred             CCCcEEEec--CCEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHH--hCCcccCCCCHHHEEEEC---C
Confidence            433322222  23899999999887654 33  47888899999999999999942  448999999999999984   3


Q ss_pred             eEEEeccccceec
Q 002105          821 HLRLSVPGLAYCT  833 (966)
Q Consensus       821 ~~~~~~~~~~~~~  833 (966)
                      .+++.|||++...
T Consensus       155 ~v~LiDFG~a~~~  167 (190)
T cd05147         155 KLYIIDVSQSVEH  167 (190)
T ss_pred             cEEEEEccccccC
Confidence            5899999987643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=2.6e-18  Score=159.61  Aligned_cols=155  Identities=35%  Similarity=0.564  Sum_probs=87.8

Q ss_pred             CCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEE
Q 002105          130 SLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWI  209 (966)
Q Consensus       130 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  209 (966)
                      ++++.+.|-||+|+++ .+|..+..+.+|++|++++|++. .+|.+++.++.|++|+++-|++. .+|..||.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            3455666667777776 45666667777777777777665 45566666666666666666654 455556666666666


Q ss_pred             EccCCCCC-CCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcC
Q 002105          210 YLGYNNLS-GEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYL  288 (966)
Q Consensus       210 ~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  288 (966)
                      ||.+|++. ..+|..|..++.|+-|+|+.|.+. .+|+.++++++|+.|.+..|.+- .+|..++.+..|+.|.+.+|++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            66555554 234444555555555555555554 44455555555555555555443 3444555555555555555544


Q ss_pred             c
Q 002105          289 S  289 (966)
Q Consensus       289 ~  289 (966)
                      +
T Consensus       186 ~  186 (264)
T KOG0617|consen  186 T  186 (264)
T ss_pred             e
Confidence            4

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.65  E-value=5.9e-17  Score=188.71  Aligned_cols=236  Identities=24%  Similarity=0.354  Sum_probs=161.6

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHH-hhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFG-KLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~-~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ......|.+-|=.|.|+++ +.|. |+||.+.+.+ ...-+.|.++++.+. ++.+|||.+.+.-+-..+...|||=+|+
T Consensus        26 ~~~~~LGstRFlKv~r~k~-~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~kAAylvRqyv  103 (1431)
T KOG1240|consen   26 HYVENLGSTRFLKVARAKD-REGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKVLVTDKAAYLVRQYV  103 (1431)
T ss_pred             eeecccCchhhhhhhhccC-CCce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHHHHhhHHHHHHHHHH
Confidence            4455678888888999987 6665 8999987665 556667776665554 3468999999998888888899999999


Q ss_pred             CCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccc---cee-----
Q 002105          764 EGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL---AYC-----  832 (966)
Q Consensus       764 ~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~---~~~-----  832 (966)
                      .+ +|.+.|..   +...+++-|+.|+..|+.-+|   ..+|.|+|||.+|||+++..-..  +.||.-   .+.     
T Consensus       104 kh-nLyDRlSTRPFL~~iEKkWiaFQLL~al~qcH---~~gVcHGDIKsENILiTSWNW~~--LtDFAsFKPtYLPeDNP  177 (1431)
T KOG1240|consen  104 KH-NLYDRLSTRPFLVLIEKKWIAFQLLKALSQCH---KLGVCHGDIKSENILITSWNWLY--LTDFASFKPTYLPEDNP  177 (1431)
T ss_pred             hh-hhhhhhccchHHHHHHHHHHHHHHHHHHHHHH---HcCccccccccceEEEeeechhh--hhcccccCCccCCCCCc
Confidence            74 88888753   455677779999999999999   66999999999999998653322  233322   111     


Q ss_pred             ------cCCCCcCCcccccccccCCC----------C-CCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHh
Q 002105          833 ------TDSKSINSSAYVAPETKESK----------D-ITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYC  894 (966)
Q Consensus       833 ------~~~~~~~~~~y~aPE~~~~~----------~-~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~  894 (966)
                            .++ ...-.+|+|||.+...          . .+++.||||.|||+.||++ |++||.-.     .+.++.+  
T Consensus       178 adf~fFFDT-SrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LS-----QL~aYr~--  249 (1431)
T KOG1240|consen  178 ADFTFFFDT-SRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLS-----QLLAYRS--  249 (1431)
T ss_pred             ccceEEEec-CCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHH-----HHHhHhc--
Confidence                  111 1123479999976431          2 5778999999999999987 68887421     1111111  


Q ss_pred             hccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002105          895 YSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL  947 (966)
Q Consensus       895 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L  947 (966)
                         +. .  .||..  ....+  +-..+.++++..++.||++|-++++.++.-
T Consensus       250 ---~~-~--~~~e~--~Le~I--ed~~~Rnlil~Mi~rdPs~RlSAedyL~~y  292 (1431)
T KOG1240|consen  250 ---GN-A--DDPEQ--LLEKI--EDVSLRNLILSMIQRDPSKRLSAEDYLQKY  292 (1431)
T ss_pred             ---cC-c--cCHHH--HHHhC--cCccHHHHHHHHHccCchhccCHHHHHHhh
Confidence               10 0  11100  00000  001355667778899999999999998763

>PRK10345 hypothetical protein; Provisional

Probab=99.65  E-value=1.1e-15  Score=156.31  Aligned_cols=132  Identities=13%  Similarity=0.164  Sum_probs=98.1

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhc----CCCceeEEeeEEecCC---eeE-EEE
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLI----MHPNIVRLHGVCRSEK---AAY-LVY  760 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~----~H~niv~l~g~~~~~~---~~~-lv~  760 (966)
                      ..+|+|+++.||.  +..++. .+||++........+++.+|+..+.++-    .||||++++|++.++.   ..+ +||
T Consensus         8 ~~LG~G~~~~Vy~--hp~~~~-k~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~I~   84 (210)
T PRK10345          8 SPLGTGRHRKCYA--HPEDAQ-RCIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDVIA   84 (210)
T ss_pred             ceecCCCceEEEE--CCCCcC-eEEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEEEe
Confidence            4568899999995  534444 4788876543444566888988887742    5899999999998863   434 799


Q ss_pred             Ec--cCCCCHHHHHHc--CCHHHHHHHHHHHHHHH-HHHhhcCCCCeEeecCCCCcEEEcCC--CCceEEEeccc
Q 002105          761 EY--IEGKELSEVLRN--LSWERRRKVAIGIAKAL-RFLHFHCSPSVVAGDVSPGKVIVDGK--DEPHLRLSVPG  828 (966)
Q Consensus       761 Ey--~~~g~L~~~l~~--l~~~~~~~i~~~ia~~l-~yLH~~~~~~iiHrDlk~~Nill~~~--~~~~~~~~~~~  828 (966)
                      ||  +++|+|.+++.+  +++.  ..++.++..++ +|||   +.+||||||||+||+++..  ....+++.|++
T Consensus        85 e~~G~~~~tL~~~l~~~~~~e~--~~~~~~~L~~l~~yLh---~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~  154 (210)
T PRK10345         85 DFDGKPSITLTEFAEQCRYEED--VAQLRQLLKKLKRYLL---DNRIVTMELKPQNILCQRISESEVIPVVCDNI  154 (210)
T ss_pred             cCCCCcchhHHHHHHcccccHh--HHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEeccCCCCCcEEEEECC
Confidence            99  668999999975  3443  45577778777 9999   5589999999999999753  33467777743

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.64  E-value=1.1e-15  Score=159.78  Aligned_cols=190  Identities=23%  Similarity=0.346  Sum_probs=130.6

Q ss_pred             cCCCceeEEeeEEec---------------------------CCeeEEEEEccCCCCHHHHHH--cCCHHHHHHHHHHHH
Q 002105          738 IMHPNIVRLHGVCRS---------------------------EKAAYLVYEYIEGKELSEVLR--NLSWERRRKVAIGIA  788 (966)
Q Consensus       738 ~~H~niv~l~g~~~~---------------------------~~~~~lv~Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia  788 (966)
                      -+|||||+++++|.+                           +..+|+||.-.+ .+|.+|+.  ..+...+.-|..|+.
T Consensus       273 a~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~-~tLr~yl~~~~~s~r~~~~~laQlL  351 (598)
T KOG4158|consen  273 AKHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYR-QTLREYLWTRHRSYRTGRVILAQLL  351 (598)
T ss_pred             CCCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcch-hhHHHHHhcCCCchHHHHHHHHHHH
Confidence            469999999987754                           224689998776 58999985  356666777888999


Q ss_pred             HHHHHHhhcCCCCeEeecCCCCcEEE--cCCCCceEEEeccccceecCCC------------CcCCcccccccccCCCC-
Q 002105          789 KALRFLHFHCSPSVVAGDVSPGKVIV--DGKDEPHLRLSVPGLAYCTDSK------------SINSSAYVAPETKESKD-  853 (966)
Q Consensus       789 ~~l~yLH~~~~~~iiHrDlk~~Nill--~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~y~aPE~~~~~~-  853 (966)
                      +|+.|||.   .+|.|||+|++|||+  |++..+.+-+.|||.+...+..            .-|...-||||+....+ 
T Consensus       352 Eav~hL~~---hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~PG  428 (598)
T KOG4158|consen  352 EAVTHLHK---HGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAVPG  428 (598)
T ss_pred             HHHHHHHH---ccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhcCCC
Confidence            99999994   499999999999998  5666788889999976433221            12445689999865432 


Q ss_pred             ----C-CCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHH
Q 002105          854 ----I-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALH  928 (966)
Q Consensus       854 ----~-~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~  928 (966)
                          + -.|+|.|+.|.+.||+++...||+.. +++..  +-.  .++...+     |.+...++.      .+.+++..
T Consensus       429 p~avvny~kAD~WA~GalaYEIfg~~NPFY~r-Gem~L--~~r--~Yqe~qL-----Palp~~vpp------~~rqlV~~  492 (598)
T KOG4158|consen  429 PNAVVNYEKADTWAAGALAYEIFGRSNPFYKR-GEMLL--DTR--TYQESQL-----PALPSRVPP------VARQLVFD  492 (598)
T ss_pred             CceeeccchhhhhhhhhhHHHHhccCCccccc-chhee--chh--hhhhhhC-----CCCcccCCh------HHHHHHHH
Confidence                1 24899999999999999999999752 11110  100  0111111     223222321      34455666


Q ss_pred             ccCCCCCCCCCHHHHHHHH
Q 002105          929 CTAGDPTARPCASDVTKTL  947 (966)
Q Consensus       929 C~~~~P~~RPt~~~v~~~L  947 (966)
                      -++.||++||+..-.+..|
T Consensus       493 lL~r~pskRvsp~iAANvl  511 (598)
T KOG4158|consen  493 LLKRDPSKRVSPNIAANVL  511 (598)
T ss_pred             HhcCCccccCCccHHHhHH
Confidence            7899999999865544444

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.62  E-value=3.6e-15  Score=152.03  Aligned_cols=135  Identities=13%  Similarity=0.104  Sum_probs=99.2

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccc--------------------------cchHHHHHHHHhhcCCCce
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITT--------------------------SSFWPDVSQFGKLIMHPNI  743 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~--------------------------~~~~~e~~~~~~~~~H~ni  743 (966)
                      .+|+|++|.||+|+.. +|..||||.+........                          ..+..|...+.+ ++|++|
T Consensus         4 ~ig~G~~~~Vy~a~~~-~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~~~~i   81 (190)
T cd05145           4 CISTGKEANVYHARTG-DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKR-LYEAGV   81 (190)
T ss_pred             eeecCCCcEEEEEEcC-CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHH-HHhCCC
Confidence            4689999999999984 899999999865421100                          011345556666 688887


Q ss_pred             eEEeeEEecCCeeEEEEEccCCCCHHH-HHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCc
Q 002105          744 VRLHGVCRSEKAAYLVYEYIEGKELSE-VLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEP  820 (966)
Q Consensus       744 v~l~g~~~~~~~~~lv~Ey~~~g~L~~-~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~  820 (966)
                      .....+....  .++||||++|+++.. .+.  .++..+..+++.+++.++.|+|+.  .+|+||||||+||+++ +  .
T Consensus        82 ~~p~~~~~~~--~~lVmE~~~g~~~~~~~l~~~~~~~~~~~~i~~~l~~~l~~lH~~--~givHrDlkP~NIll~-~--~  154 (190)
T cd05145          82 PVPEPILLKK--NVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLYQE--AGLVHGDLSEYNILYH-D--G  154 (190)
T ss_pred             CCceEEEecC--CEEEEEEecCCCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHh--CCEecCCCChhhEEEE-C--C
Confidence            5444443332  489999999986543 343  366778889999999999999951  5999999999999998 3  3


Q ss_pred             eEEEeccccceec
Q 002105          821 HLRLSVPGLAYCT  833 (966)
Q Consensus       821 ~~~~~~~~~~~~~  833 (966)
                      .+++.|||++...
T Consensus       155 ~~~liDFG~a~~~  167 (190)
T cd05145         155 KPYIIDVSQAVEL  167 (190)
T ss_pred             CEEEEEcccceec
Confidence            5788999987643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.62  E-value=4.3e-15  Score=148.67  Aligned_cols=177  Identities=14%  Similarity=0.085  Sum_probs=127.9

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccc----cchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITT----SSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~----~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ...++++||.||.+..  .+..++.+.+........    .-|.+|++.+.++-.|++|++++++    +..+++|||++
T Consensus         8 ~~l~~~~f~~v~~~~~--~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmeyI~   81 (218)
T PRK12274          8 EPLKSDTFGRILLVRG--GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSYLA   81 (218)
T ss_pred             eeecCCCcceEEEeec--CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEeeec
Confidence            3468899999997664  677777776654332111    1366788888884356889999886    34699999999


Q ss_pred             CCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecC-CCCcEEEcCCCCceEEEeccccceecCCCC------
Q 002105          765 GKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDV-SPGKVIVDGKDEPHLRLSVPGLAYCTDSKS------  837 (966)
Q Consensus       765 ~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDl-k~~Nill~~~~~~~~~~~~~~~~~~~~~~~------  837 (966)
                      |.+|.+.+..    ....+..+++++++|+|   ..+|+|||| ||+|||++.+.  .+++.|||++.......      
T Consensus        82 G~~L~~~~~~----~~~~~~~qi~~~L~~lH---~~GIvHrDL~kp~NILv~~~g--~i~LIDFG~A~~~~~~~~~~r~L  152 (218)
T PRK12274         82 GAAMYQRPPR----GDLAYFRAARRLLQQLH---RCGVAHNDLAKEANWLVQEDG--SPAVIDFQLAVRGNPRARWMRLL  152 (218)
T ss_pred             CccHHhhhhh----hhHHHHHHHHHHHHHHH---HCcCccCCCCCcceEEEcCCC--CEEEEECCCceecCCcchHHHHH
Confidence            9999765422    12457789999999999   559999999 79999998654  47889999986432211      


Q ss_pred             -------------cCCcccccccccCCC-CCC-CcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          838 -------------INSSAYVAPETKESK-DIT-EKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       838 -------------~~~~~y~aPE~~~~~-~~~-~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                                   ..++.|++|+...-- ..+ ...+-++-|.-+|.++||+.|..++
T Consensus       153 ~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~  210 (218)
T PRK12274        153 AREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWED  210 (218)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCcccc
Confidence                         246778888743321 223 3567789999999999999986544

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.57  E-value=1.1e-14  Score=143.02  Aligned_cols=200  Identities=14%  Similarity=0.194  Sum_probs=153.0

Q ss_pred             ccHHHHHhhccccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCC-CceeEEeeEEec
Q 002105          674 LTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMH-PNIVRLHGVCRS  752 (966)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H-~niv~l~g~~~~  752 (966)
                      .+.++++.+..+..+..+|.|+||..|.|....+|..||||.-.....  ......|...... ++| ..|..+.-|..+
T Consensus         6 ~s~~~~iv~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~--hpqL~yEskvY~i-L~~g~GiP~i~~y~~e   82 (341)
T KOG1163|consen    6 GSLEELIVGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAK--HPQLLYESKVYRI-LQGGVGIPHIRHYGTE   82 (341)
T ss_pred             cchhhheeccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCC--CcchhHHHHHHHH-hccCCCCchhhhhccc
Confidence            355677777788888899999999999999999999999996543322  2233444433333 444 677778888888


Q ss_pred             CCeeEEEEEccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC-CCceEEEecc
Q 002105          753 EKAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK-DEPHLRLSVP  827 (966)
Q Consensus       753 ~~~~~lv~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~-~~~~~~~~~~  827 (966)
                      ...-.+|||.. |-+|++...    .++..+.+-+|-|+..-++|+|   ..+.|||||||+|.|..-+ ...++-+.||
T Consensus        83 ~~ynvlVMdLL-GPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH---~r~fiHRDIKPdNFLMGlgrh~~kl~LIDF  158 (341)
T KOG1163|consen   83 KDYNVLVMDLL-GPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVH---LRNFIHRDIKPDNFLMGLGRHCNKLYLIDF  158 (341)
T ss_pred             cccceeeeecc-CccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHH---hhccccccCCccceeeccccccceEEEEec
Confidence            88899999987 568888763    5888888899999999999999   4579999999999998643 2345668899


Q ss_pred             cccee-------------cCCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          828 GLAYC-------------TDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       828 ~~~~~-------------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                      |++..             .+....||..|.+--...+..-+.+-|.=|+|-+|...--|..|+++-
T Consensus       159 GLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQgl  224 (341)
T KOG1163|consen  159 GLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGL  224 (341)
T ss_pred             cchhhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCccccc
Confidence            99853             122346788887655444445566789999999999999999999864

>PLN03150 hypothetical protein; Provisional

Probab=99.57  E-value=1.1e-14  Score=174.47  Aligned_cols=149  Identities=33%  Similarity=0.645  Sum_probs=96.2

Q ss_pred             CCcHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCC----cccceeeCC--CC---CEEEEEcCCCCccccccccccCCCCC
Q 002105           17 TCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFC----KWNGISCQN--ST---HVNAIELSAKNISGKISSSIFHLPHV   87 (966)
Q Consensus        17 ~~~~~~~~~Ll~~k~~~~~~~~~l~~w~~~~~~c----~w~gv~c~~--~~---~v~~L~L~~~~l~~~~~~~~~~l~~L   87 (966)
                      .+.+.|.+||+.+|+.+.++..  .+|.+. +||    .|.||.|+.  .+   +|+.|+|++|+++|.+|+++..+++|
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g~-~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L  444 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPLR--FGWNGD-PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHL  444 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCccc--CCCCCC-CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCC
Confidence            3566899999999999876542  489752 332    799999952  11   47788888888888877777777788


Q ss_pred             CEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCC
Q 002105           88 ESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNV  167 (966)
Q Consensus        88 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  167 (966)
                      +.|+|++|.+.|.+|..+                       +.+++|++|||++|+++|.+|+.++++++|++|+|++|.
T Consensus       445 ~~L~Ls~N~l~g~iP~~~-----------------------~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        445 QSINLSGNSIRGNIPPSL-----------------------GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             CEEECCCCcccCcCChHH-----------------------hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence            888888777777777653                       233445555555555555555555555666666666665


Q ss_pred             CcccCCcCCCCC-CCCCEEEccCCC
Q 002105          168 LVGEIPLSISNI-TSLQIFTLASNQ  191 (966)
Q Consensus       168 l~~~~p~~~~~l-~~L~~L~L~~n~  191 (966)
                      ++|.+|..++.+ .++..+++.+|.
T Consensus       502 l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        502 LSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             ccccCChHHhhccccCceEEecCCc
Confidence            555555554432 233444444443

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.54  E-value=4e-14  Score=147.36  Aligned_cols=132  Identities=17%  Similarity=0.179  Sum_probs=105.8

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcc--------cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--------TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--------~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      .+|+|++|.||+|+.  .|..+++|+.......        ....+..|+..+.+ ++|++|+....++...+..++|||
T Consensus         3 ~l~~G~~~~vy~~~~--~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~~~~i~~p~~~~~~~~~~~lv~e   79 (211)
T PRK14879          3 LIKRGAEAEIYLGDF--LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSR-ARKAGVNVPAVYFVDPENFIIVME   79 (211)
T ss_pred             ccccCceEEEEEEee--CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCeEEEEeCCCCEEEEE
Confidence            468999999999986  6778889876532211        11245677777766 689998887777777788899999


Q ss_pred             ccCCCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccce
Q 002105          762 YIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY  831 (966)
Q Consensus       762 y~~~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~  831 (966)
                      |++|++|.+++....+ .+..++.+++.+|+++|   ..+++|||+||+||+++ +  ..+++.|||.+.
T Consensus        80 ~~~G~~L~~~~~~~~~-~~~~i~~~i~~~l~~lH---~~~i~H~Dl~p~Nil~~-~--~~~~liDf~~a~  142 (211)
T PRK14879         80 YIEGEPLKDLINSNGM-EELELSREIGRLVGKLH---SAGIIHGDLTTSNMILS-G--GKIYLIDFGLAE  142 (211)
T ss_pred             EeCCcCHHHHHHhccH-HHHHHHHHHHHHHHHHH---hCCcccCCCCcccEEEE-C--CCEEEEECCccc
Confidence            9999999999977666 88899999999999999   56899999999999998 2  346788888653

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.53  E-value=2.8e-15  Score=167.48  Aligned_cols=181  Identities=20%  Similarity=0.282  Sum_probs=135.0

Q ss_pred             CCCCccEEEEEE---EecCCcEEEEEEEeccCcc-c-ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          692 GKKGVSSSYKVR---SLANDMQFVVKKIIDVNTI-T-TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       692 g~~g~~~vy~~~---~~~~~~~vavk~~~~~~~~-~-~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      |.|.+|.|+.++   ....|..+|.|...+.... . ......|...+...-.||.+|++.-.++.+...+++++|..||
T Consensus         3 g~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~rgg   82 (612)
T KOG0603|consen    3 GQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLRGG   82 (612)
T ss_pred             CcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcccc
Confidence            555555565433   2345566666655432111 1 1122333333444224999999999999999999999999999


Q ss_pred             CHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec--CCCCcCCc
Q 002105          767 ELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT--DSKSINSS  841 (966)
Q Consensus       767 ~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~--~~~~~~~~  841 (966)
                      +|...+..   ++......+...+|-|++++|   ..+|+|||+|++||++|.+  .+++..|||.....  ....+||.
T Consensus        83 ~lft~l~~~~~f~~~~~~~~~aelaLald~lh---~l~iiyrd~k~enilld~~--Ghi~~tdfglske~v~~~~~cgt~  157 (612)
T KOG0603|consen   83 DLFTRLSKEVMFDELDVAFYLAELALALDHLH---KLGIAYRDYKLENVLLLLE--GHIKLTDFGLSKEAVKEKIACGTY  157 (612)
T ss_pred             hhhhccccCCchHHHHHHHHHHHHHHHHhhcc---hhHHHHhcccccceeeccc--CccccCCchhhhHhHhhhhcccch
Confidence            99988864   445555566777899999999   6799999999999999954  56788999987653  22337899


Q ss_pred             ccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCC
Q 002105          842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADA  879 (966)
Q Consensus       842 ~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~  879 (966)
                      .|||||+..  .+...+|-|||||+++||+||..||..
T Consensus       158 eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~  193 (612)
T KOG0603|consen  158 EYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG  193 (612)
T ss_pred             hhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCch
Confidence            999999998  567899999999999999999999876

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=6e-15  Score=161.75  Aligned_cols=161  Identities=25%  Similarity=0.365  Sum_probs=117.9

Q ss_pred             eeEEEEEccCCCCHHHHHH------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccc
Q 002105          755 AAYLVYEYIEGKELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPG  828 (966)
Q Consensus       755 ~~~lv~Ey~~~g~L~~~l~------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~  828 (966)
                      ..||.|++|+-++|.+||+      ..+|.....++.|++.|++|      ++.+|||+||.||....+.  .++++|||
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y------k~~ihrdlkp~nif~~~d~--q~kIgDFg  401 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY------KGLIHRDLKPSNIFFSDDD--QLKIGDFG  401 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh------ccchhhhccccccccccch--hhhhhhhh
Confidence            5789999999999999995      26788889999999999999      4889999999999987554  57899999


Q ss_pred             cceecC------------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhh
Q 002105          829 LAYCTD------------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCY  895 (966)
Q Consensus       829 ~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~  895 (966)
                      +.....            +..+||..||+||.+.+..|+.|+||||+|++++|+++ =..+++.       +  .+....
T Consensus       402 l~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er-------~--~t~~d~  472 (516)
T KOG1033|consen  402 LVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFER-------I--ATLTDI  472 (516)
T ss_pred             heeecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHH-------H--Hhhhhh
Confidence            865421            33478999999999999999999999999999999988 2322211       0  000111


Q ss_pred             ccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 002105          896 SDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV  943 (966)
Q Consensus       896 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v  943 (966)
                      +++    .++|.....++       +-..+..+-+.+.|.+||++.++
T Consensus       473 r~g----~ip~~~~~d~p-------~e~~ll~~lls~~p~~RP~~~~~  509 (516)
T KOG1033|consen  473 RDG----IIPPEFLQDYP-------EEYTLLQQLLSPSPEERPSAIEV  509 (516)
T ss_pred             hcC----CCChHHhhcCc-------HHHHHHHHhcCCCcccCchHHHH
Confidence            111    13333333333       11234456688999999965544

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.51  E-value=9.4e-14  Score=143.10  Aligned_cols=128  Identities=20%  Similarity=0.203  Sum_probs=97.6

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCccc--------ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT--------TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~--------~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      +|+|++|.||++.  .+|..+++|+........        .+.+.+|+..+.+ ++|+++.....++..++..++||||
T Consensus         2 ig~G~~~~vy~~~--~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~~~~i~~p~~~~~~~~~~~lv~e~   78 (199)
T TIGR03724         2 IAKGAEAIIYLGD--FLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSR-ARKAGVNTPVVYDVDPDNKTIVMEY   78 (199)
T ss_pred             CCCCceEEEEEee--cCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHH-HHHCCCCCCEEEEEECCCCEEEEEE
Confidence            5889999999998  467889999865432111        1335567777766 5788765555555566677999999


Q ss_pred             cCCCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccce
Q 002105          763 IEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY  831 (966)
Q Consensus       763 ~~~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~  831 (966)
                      ++|++|.+++.....    .++.+++.+|+++|   ..+++|||+||+||+++ +  ..+++.|||.+.
T Consensus        79 ~~g~~l~~~~~~~~~----~~~~~i~~~l~~lH---~~gi~H~Dl~~~Nil~~-~--~~~~liDfg~a~  137 (199)
T TIGR03724        79 IEGKPLKDVIEEGND----ELLREIGRLVGKLH---KAGIVHGDLTTSNIIVR-D--DKLYLIDFGLGK  137 (199)
T ss_pred             ECCccHHHHHhhcHH----HHHHHHHHHHHHHH---HCCeecCCCCcceEEEE-C--CcEEEEECCCCc
Confidence            999999988754221    88999999999999   56999999999999998 2  456788888754

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.49  E-value=9.3e-14  Score=146.73  Aligned_cols=184  Identities=18%  Similarity=0.278  Sum_probs=116.4

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccc---cchHHHHHHHHhhcC----------CCceeEEeeEEe-----
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITT---SSFWPDVSQFGKLIM----------HPNIVRLHGVCR-----  751 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~---~~~~~e~~~~~~~~~----------H~niv~l~g~~~-----  751 (966)
                      .+|.|+++.||.+.+..+++.+|||...-......   +++.+|.-.+.. +.          |-.++.-++...     
T Consensus        19 ~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~-~~~~~~p~~a~~~~r~l~P~d~~~i~~~~   97 (288)
T PF14531_consen   19 IIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITL-FPGVKNPKEAYRHLRFLVPLDLLRIPGKP   97 (288)
T ss_dssp             EEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGG-STT--SHHHHHHHH-B---SEEEEETTS-
T ss_pred             ccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhh-hccCCCHHHHHHhceEEeeeEEEEEcCCC
Confidence            35778888899999999999999998865443222   223333322322 11          222222222221     


Q ss_pred             ----cC---C-----eeEEEEEccCCCCHHHHHHc----------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCC
Q 002105          752 ----SE---K-----AAYLVYEYIEGKELSEVLRN----------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSP  809 (966)
Q Consensus       752 ----~~---~-----~~~lv~Ey~~~g~L~~~l~~----------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~  809 (966)
                          ..   .     ..+++|+-+. +||.+++..          +....|..+..|+.+.+++||   ..++||+||||
T Consensus        98 ~~~~~~~~~~~~~v~n~~~l~P~~~-~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh---~~GlVHgdi~~  173 (288)
T PF14531_consen   98 PFFERGPGQSIYWVLNRFLLMPRAQ-GDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLH---SYGLVHGDIKP  173 (288)
T ss_dssp             SEEEECETTEEEEEESEEEEEE--S-EEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTEEEST-SG
T ss_pred             cceecCCCCccceeehhhhccchhh-hcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHh---hcceEecccce
Confidence                11   1     2366787775 788887641          335567778899999999999   45999999999


Q ss_pred             CcEEEcCCCCceEEEeccccceecCCC---CcCCcccccccccCC--------CCCCCcchHHHHHHHHHHHHcCCCCCC
Q 002105          810 GKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYVAPETKES--------KDITEKGDIYGFGLILIDLLTGKSPAD  878 (966)
Q Consensus       810 ~Nill~~~~~~~~~~~~~~~~~~~~~~---~~~~~~y~aPE~~~~--------~~~~~~~Dv~S~Gv~l~el~tg~~p~~  878 (966)
                      +|++++.+  ..+.+++|+......+.   ...+.+|.+||....        -.+|.+.|.|++|+++|.|.+|+.||+
T Consensus       174 ~nfll~~~--G~v~Lg~F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~  251 (288)
T PF14531_consen  174 ENFLLDQD--GGVFLGDFSSLVRAGTRYRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFG  251 (288)
T ss_dssp             GGEEE-TT--S-EEE--GGGEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STC
T ss_pred             eeEEEcCC--CCEEEcChHHHeecCceeeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCC
Confidence            99999976  45678888765432211   234567999996533        357889999999999999999999987


Q ss_pred             CC
Q 002105          879 AD  880 (966)
Q Consensus       879 ~~  880 (966)
                      ..
T Consensus       252 ~~  253 (288)
T PF14531_consen  252 LS  253 (288)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.44  E-value=4.1e-13  Score=159.30  Aligned_cols=130  Identities=20%  Similarity=0.212  Sum_probs=100.7

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC-c-------ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-T-------ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~-------~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      ...+|+|++|.||++..  .+..+++|+..... .       ...+.+.+|+..+.+ ++|++|+....++..++..++|
T Consensus       338 ~~~iG~G~~g~Vy~~~~--~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~~~~i~~p~~~~~~~~~~~lv  414 (535)
T PRK09605        338 DHLIGKGAEADIKKGEY--LGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSE-ARRAGVPTPVIYDVDPEEKTIV  414 (535)
T ss_pred             cceeccCCcEEEEEEee--cCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHh-hcccCCCeeEEEEEeCCCCEEE
Confidence            34568999999999886  33344555433211 1       112346677777777 6999999988888877788999


Q ss_pred             EEccCCCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccce
Q 002105          760 YEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY  831 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~  831 (966)
                      |||++|++|.+++.     .+.+++.+++++|+|||   ..+++|||+||+||++++   ..+++.|||++.
T Consensus       415 ~E~~~g~~L~~~l~-----~~~~~~~~i~~~L~~lH---~~giiHrDlkp~NILl~~---~~~~liDFGla~  475 (535)
T PRK09605        415 MEYIGGKDLKDVLE-----GNPELVRKVGEIVAKLH---KAGIVHGDLTTSNFIVRD---DRLYLIDFGLGK  475 (535)
T ss_pred             EEecCCCcHHHHHH-----HHHHHHHHHHHHHHHHH---hCCCccCCCChHHEEEEC---CcEEEEeCcccc
Confidence            99999999999886     56789999999999999   569999999999999953   356789999875

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.44  E-value=1.6e-13  Score=160.63  Aligned_cols=151  Identities=26%  Similarity=0.442  Sum_probs=110.2

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      .+.-+..|.+|.||.+++....+.+|. |+.+.+.+                 =+||..+.|      ..+.|      |
T Consensus        87 ~IklisngAygavylvrh~~trqrfa~-kiNkq~li-----------------lRnilt~a~------npfvv------g  136 (1205)
T KOG0606|consen   87 TIKLISNGAYGAVYLVRHKETRQRFAM-KINKQNLI-----------------LRNILTFAG------NPFVV------G  136 (1205)
T ss_pred             eeEeeccCCCCceeeeeccccccchhh-cccccchh-----------------hhccccccC------Cccee------c
Confidence            344455667777999999888888888 54332211                 112222221      12222      5


Q ss_pred             CHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee-----------
Q 002105          767 ELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC-----------  832 (966)
Q Consensus       767 ~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~-----------  832 (966)
                      |-...++.   ++-.        .+.|++|+|   +.+|+|||+||+|.++..  ..++|+.|||+...           
T Consensus       137 Dc~tllk~~g~lPvd--------mvla~Eylh---~ygivhrdlkpdnllIT~--mGhiKlTDfgLsk~GLms~atnl~e  203 (1205)
T KOG0606|consen  137 DCATLLKNIGPLPVD--------MVLAVEYLH---SYGIVHRDLKPDNLLITS--MGHIKLTDFGLSKKGLMSLATNLKE  203 (1205)
T ss_pred             hhhhhcccCCCCcch--------hhHHhHhhc---cCCeecCCCCCCcceeee--cccccccchhhhhhhhhhccchhhh
Confidence            55555543   2222        278999999   779999999999999984  56788999987642           


Q ss_pred             ----------cCCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          833 ----------TDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       833 ----------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                                .+.+++|||.|+|||++..+.|+..+|-|++|+|+||.+-|+.||.++
T Consensus       204 g~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGd  261 (1205)
T KOG0606|consen  204 GHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGD  261 (1205)
T ss_pred             cchHHHHHHhhhccccCCccccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCC
Confidence                      123458999999999999999999999999999999999999999877

>smart00090 RIO RIO-like kinase

Probab=99.44  E-value=6.4e-13  Score=139.62  Aligned_cols=132  Identities=14%  Similarity=0.081  Sum_probs=95.5

Q ss_pred             ccCCCCCccEEEEEE-EecCCcEEEEEEEeccCccc---------c---------------cchHHHHHHHHhhcCC--C
Q 002105          689 TSRGKKGVSSSYKVR-SLANDMQFVVKKIIDVNTIT---------T---------------SSFWPDVSQFGKLIMH--P  741 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~-~~~~~~~vavk~~~~~~~~~---------~---------------~~~~~e~~~~~~~~~H--~  741 (966)
                      ..+|+|++|.||+|. ...+|..||+|.+.......         .               ..+..|...+.++ .|  .
T Consensus        34 ~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L-~~~~i  112 (237)
T smart00090       34 GCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRL-YEAGV  112 (237)
T ss_pred             CeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHH-HhcCC
Confidence            357899999999998 66799999999886432100         0               1134566666664 44  2


Q ss_pred             ceeEEeeEEecCCeeEEEEEccCCCCHHHHH-Hc--CCHHHHHHHHHHHHHHHHHHhhcCCCC-eEeecCCCCcEEEcCC
Q 002105          742 NIVRLHGVCRSEKAAYLVYEYIEGKELSEVL-RN--LSWERRRKVAIGIAKALRFLHFHCSPS-VVAGDVSPGKVIVDGK  817 (966)
Q Consensus       742 niv~l~g~~~~~~~~~lv~Ey~~~g~L~~~l-~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~-iiHrDlk~~Nill~~~  817 (966)
                      .+.+.+++    ...++||||++|++|..+. ..  ....+...++.|++.+++|||   ..+ |+||||||+||+++ +
T Consensus       113 ~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~g~iiH~Dikp~NIli~-~  184 (237)
T smart00090      113 PVPKPIAW----RRNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLY---KEGELVHGDLSEYNILVH-D  184 (237)
T ss_pred             CCCeeeEe----cCceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHHHHH---hcCCEEeCCCChhhEEEE-C
Confidence            34444443    2358999999999987654 22  344456789999999999999   457 99999999999998 3


Q ss_pred             CCceEEEeccccce
Q 002105          818 DEPHLRLSVPGLAY  831 (966)
Q Consensus       818 ~~~~~~~~~~~~~~  831 (966)
                        ..+++.|||.+.
T Consensus       185 --~~i~LiDFg~a~  196 (237)
T smart00090      185 --GKVVIIDVSQSV  196 (237)
T ss_pred             --CCEEEEEChhhh
Confidence              357888998764

>PLN03150 hypothetical protein; Provisional

Probab=99.43  E-value=2e-13  Score=163.60  Aligned_cols=92  Identities=38%  Similarity=0.668  Sum_probs=47.0

Q ss_pred             ccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCC
Q 002105          469 LENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSE  548 (966)
Q Consensus       469 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~  548 (966)
                      ++.|+|++|.++|.+|..++.+++|+.|+|++|++.|.+|..++.+++|+.|||++|+++|.+|..++.+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CcCcccCCcccc
Q 002105          549 NQLSGKIPQTLG  560 (966)
Q Consensus       549 N~l~g~~p~~l~  560 (966)
                      |+++|.+|..+.
T Consensus       500 N~l~g~iP~~l~  511 (623)
T PLN03150        500 NSLSGRVPAALG  511 (623)
T ss_pred             CcccccCChHHh
Confidence            555555554443

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.43  E-value=1.5e-12  Score=134.03  Aligned_cols=187  Identities=14%  Similarity=0.210  Sum_probs=147.6

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      -..+|.|.||+.+.|.-+-++..||||.-.....  .-+...|-+...-+..-+.|...|-|..++.+-.||||.+ |-|
T Consensus        33 GkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~--APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidLL-GPS  109 (449)
T KOG1165|consen   33 GKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSE--APQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDLL-GPS  109 (449)
T ss_pred             ccccccCcceeeecccccccCceEEEEeccccCC--cchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhhh-CcC
Confidence            3457999999999999999999999996433322  2234555555444445799999988888888889999987 467


Q ss_pred             HHHHH----HcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC---CceEEEeccccceecC------
Q 002105          768 LSEVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD---EPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       768 L~~~l----~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~---~~~~~~~~~~~~~~~~------  834 (966)
                      |++..    +.++..+..-||.|+..-++|+|+   ...|.|||||+|.||....   .-.|-+.|||++....      
T Consensus       110 LEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~---k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~Tkq  186 (449)
T KOG1165|consen  110 LEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHE---KDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQ  186 (449)
T ss_pred             HHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHh---cceeecccCccceeecCCCCCCCceEEEEeccchhhhcCccccc
Confidence            77765    368888999999999999999994   4799999999999997432   2345689999986411      


Q ss_pred             -------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          835 -------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       835 -------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                             ....||..||+=-.-.++.-+.+-|.=|+|-|+...+-|..|+++-
T Consensus       187 HIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGL  239 (449)
T KOG1165|consen  187 HIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGL  239 (449)
T ss_pred             cCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccc
Confidence                   1235899999988777888888999999999999999999999863

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.40  E-value=6.6e-13  Score=136.40  Aligned_cols=142  Identities=21%  Similarity=0.410  Sum_probs=107.9

Q ss_pred             HHHhhcCCCceeEEeeEEecCC-----eeEEEEEccCCCCHHHHHHc-------CCHHHHHHHHHHHHHHHHHHhhcCCC
Q 002105          733 QFGKLIMHPNIVRLHGVCRSEK-----AAYLVYEYIEGKELSEVLRN-------LSWERRRKVAIGIAKALRFLHFHCSP  800 (966)
Q Consensus       733 ~~~~~~~H~niv~l~g~~~~~~-----~~~lv~Ey~~~g~L~~~l~~-------l~~~~~~~i~~~ia~~l~yLH~~~~~  800 (966)
                      .+.. +.|.|||+++.|+.+.+     ...++.|||+.|++.++|++       +....-.+++.||..||.|||+ |.|
T Consensus       120 nllq-lvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs-~~P  197 (458)
T KOG1266|consen  120 NLLQ-LVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHS-CDP  197 (458)
T ss_pred             HHHH-HHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhc-cCC
Confidence            3444 47999999999987543     46789999999999999974       4444556889999999999995 599


Q ss_pred             CeEeecCCCCcEEEcCCCCceEEEecccccee------c--CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc
Q 002105          801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------T--DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT  872 (966)
Q Consensus       801 ~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t  872 (966)
                      +|+|+++...-|.+..++-.++....+.....      .  .+...+-++|.|||+-.....+.++|||+||...+||..
T Consensus       198 piihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemai  277 (458)
T KOG1266|consen  198 PIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAI  277 (458)
T ss_pred             ccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHH
Confidence            99999999999999855433222222222110      0  112245679999999988888999999999999999998


Q ss_pred             CCCC
Q 002105          873 GKSP  876 (966)
Q Consensus       873 g~~p  876 (966)
                      |..-
T Consensus       278 lEiq  281 (458)
T KOG1266|consen  278 LEIQ  281 (458)
T ss_pred             heec
Confidence            8653

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=3.2e-12  Score=153.38  Aligned_cols=179  Identities=18%  Similarity=0.212  Sum_probs=138.7

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcC---CCceeEEeeEEecCCeeEEEEEccCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~---H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ..+|.||+|.||+|.. .+|+.||+|.-.......   |.-- .+++.+++   -+-|..+...+.-.+..++|+||.+-
T Consensus       704 ~e~G~g~y~~vy~a~~-~~~~~~alK~e~P~~~WE---fYI~-~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv~ey~~~  778 (974)
T KOG1166|consen  704 KEIGEGSYGSVYVATH-SNGKLVALKVEKPPNPWE---FYIC-LQVMERLKPQMLPSIMHISSAHVFQNASVLVSEYSPY  778 (974)
T ss_pred             eeeccccceEEEEeec-CCCcEEEEEeecCCCcee---eeeh-HHHHHhhchhhhcchHHHHHHHccCCcceeeeecccc
Confidence            3469999999999998 559999999765544332   1111 11222233   23455555555667788999999999


Q ss_pred             CCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEc-----CCCCceEEEeccccceecC---
Q 002105          766 KELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVD-----GKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       766 g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~-----~~~~~~~~~~~~~~~~~~~---  834 (966)
                      |+|.+++.   ..+|.-.+.++.++++-++.||   ..+|||+||||+|.||.     +...+.+++.|||.+....   
T Consensus       779 Gtlld~~N~~~~m~e~lv~~~~~qml~ive~lH---~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp  855 (974)
T KOG1166|consen  779 GTLLDLINTNKVMDEYLVMFFSCQMLRIVEHLH---AMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFP  855 (974)
T ss_pred             ccHHHhhccCCCCCchhhhHHHHHHHHHHHHHH---hcceecccCCcceeEeecccCCCCcccceEEEecccceeeeEcC
Confidence            99999996   4899999999999999999999   55999999999999983     3345668899999875422   


Q ss_pred             -----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCC
Q 002105          835 -----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKS  875 (966)
Q Consensus       835 -----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~  875 (966)
                           ....+|-++-.+|...++.-+..+|-|.+..+++-|+-|+.
T Consensus       856 ~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  856 DGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY  901 (974)
T ss_pred             CCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence                 12356778889999999999999999999999999999974

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.38  E-value=1.5e-14  Score=158.15  Aligned_cols=195  Identities=32%  Similarity=0.523  Sum_probs=154.4

Q ss_pred             CCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEE
Q 002105          130 SLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWI  209 (966)
Q Consensus       130 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  209 (966)
                      .+.--...||+.|++. .+|..+..+..|+.|.|..|.+. .+|..++++..|++|+|+.|+++ .+|..++.|+ |+.|
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            3445567788888887 68888888888888888888876 67888888999999999999887 5777787775 8888


Q ss_pred             EccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCc
Q 002105          210 YLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLS  289 (966)
Q Consensus       210 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  289 (966)
                      -+++|+++ .+|+.++.+..|..||.+.|++. .+|..++.+.+|+.|.+..|++. .+|..+..| .|..||++.|+++
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis  224 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS  224 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence            89999887 78888888888999999999988 57888899999999999999887 567777754 4888899999887


Q ss_pred             ccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCC---ccEEEccCC
Q 002105          290 GEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPK---LQVLQLWSN  334 (966)
Q Consensus       290 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~---L~~L~L~~N  334 (966)
                       .+|..|..|..|++|-|.+|.++ ..|..++...+   .++|+..-+
T Consensus       225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             -ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence             67888888888888888888887 45555543333   344554444

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.36  E-value=3.5e-12  Score=131.14  Aligned_cols=130  Identities=16%  Similarity=0.108  Sum_probs=94.7

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc-c---------------------ccchHHHHHHHHhhcCCC--cee
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-T---------------------TSSFWPDVSQFGKLIMHP--NIV  744 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-~---------------------~~~~~~e~~~~~~~~~H~--niv  744 (966)
                      ..+|.|++|.||++.. .+|..||||++...... .                     ...+..|...+.+ +.|+  .++
T Consensus        21 ~~i~~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~~~~i~v~   98 (198)
T cd05144          21 NQIGVGKESDVYLALD-PDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKA-LYEEGFPVP   98 (198)
T ss_pred             CccccCcceEEEEEEc-CCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHH-HHHcCCCCC
Confidence            4578999999999987 68999999986532210 0                     0113455555656 4676  344


Q ss_pred             EEeeEEecCCeeEEEEEccCCCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEE
Q 002105          745 RLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRL  824 (966)
Q Consensus       745 ~l~g~~~~~~~~~lv~Ey~~~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~  824 (966)
                      +.++.    ...++||||++|++|.+....   .....++.+++.++.++|   ..+|+||||||+||+++++.  .+++
T Consensus        99 ~~~~~----~~~~lv~e~~~g~~L~~~~~~---~~~~~~~~~i~~~l~~lh---~~gi~H~Dl~p~Nill~~~~--~~~l  166 (198)
T cd05144          99 KPIDW----NRHAVVMEYIDGVELYRVRVL---EDPEEVLDEILEEIVKAY---KHGIIHGDLSEFNILVDDDE--KIYI  166 (198)
T ss_pred             ceeec----CCceEEEEEeCCcchhhcccc---ccHHHHHHHHHHHHHHHH---HCCCCcCCCCcccEEEcCCC--cEEE
Confidence            44442    345899999999999876431   345678899999999999   46999999999999998644  5688


Q ss_pred             ecccccee
Q 002105          825 SVPGLAYC  832 (966)
Q Consensus       825 ~~~~~~~~  832 (966)
                      .|||.+..
T Consensus       167 iDfg~~~~  174 (198)
T cd05144         167 IDWPQMVS  174 (198)
T ss_pred             EECCcccc
Confidence            89998743

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.35  E-value=7.1e-12  Score=122.52  Aligned_cols=131  Identities=23%  Similarity=0.244  Sum_probs=105.5

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCC--CceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMH--PNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H--~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      .+|.|+++.||++..  ++..+++|.......  ...+..|+..+.+ ++|  ++++++++++..++..+++|||++++.
T Consensus         5 ~i~~g~~~~v~~~~~--~~~~~~iK~~~~~~~--~~~~~~e~~~~~~-l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~   79 (155)
T cd05120           5 LLKGGLTNRVYLLGT--KDEDYVLKINPSREK--GADREREVAILQL-LARKGLPVPKVLASGESDGWSYLLMEWIEGET   79 (155)
T ss_pred             ecccccccceEEEEe--cCCeEEEEecCCCCc--hhHHHHHHHHHHH-HHHcCCCCCeEEEEcCCCCccEEEEEecCCee
Confidence            467888899999996  336888888644322  3467788877777 455  589999999888889999999999988


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccce
Q 002105          768 LSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY  831 (966)
Q Consensus       768 L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~  831 (966)
                      +..+    ++..+..++.+++++++++|.....+++|+|+||+||+++.  ...+++.||+.+.
T Consensus        80 ~~~~----~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~--~~~~~l~Df~~~~  137 (155)
T cd05120          80 LDEV----SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDD--GKILGIIDWEYAG  137 (155)
T ss_pred             cccC----CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEEC--CcEEEEEeccccc
Confidence            8765    67778889999999999999765578999999999999986  3457788888653

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.30  E-value=9.2e-14  Score=152.15  Aligned_cols=181  Identities=32%  Similarity=0.505  Sum_probs=115.1

Q ss_pred             cCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCC-CCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCE
Q 002105           82 FHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTG-PVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKV  160 (966)
Q Consensus        82 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  160 (966)
                      ..+.--...||+.|++. ++|.++-. +..|+.|.|..|.|.. +.+++++..|++|||+.|+++ .+|..++.|+ |+.
T Consensus        72 ~~ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV  147 (722)
T ss_pred             ccccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence            34555566778888877 67765432 2566777777777654 444567777777777777776 4566665554 666


Q ss_pred             EEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccc
Q 002105          161 LDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNL  240 (966)
Q Consensus       161 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  240 (966)
                      |-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|.++..| .|..||+|.|++
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki  223 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI  223 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce
Confidence            777776665 55666666666666676666665 45666666666666666666665 455556544 366666666666


Q ss_pred             cccCCcCCCCCCccceEeccccccCCCCChhh
Q 002105          241 TGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI  272 (966)
Q Consensus       241 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l  272 (966)
                      + .+|-.|.+|+.|++|-|.+|.+. ..|..+
T Consensus       224 s-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI  253 (722)
T KOG0532|consen  224 S-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI  253 (722)
T ss_pred             e-ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence            6 46666666666666666666665 334433

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.30  E-value=1.4e-11  Score=129.92  Aligned_cols=131  Identities=15%  Similarity=0.240  Sum_probs=94.6

Q ss_pred             CC-CCCccEEEEEEEecCCcEEEEEEEeccC-------------cccccchHHHHHHHHhhcCCCce--eEEeeEEecC-
Q 002105          691 RG-KKGVSSSYKVRSLANDMQFVVKKIIDVN-------------TITTSSFWPDVSQFGKLIMHPNI--VRLHGVCRSE-  753 (966)
Q Consensus       691 ~g-~~g~~~vy~~~~~~~~~~vavk~~~~~~-------------~~~~~~~~~e~~~~~~~~~H~ni--v~l~g~~~~~-  753 (966)
                      +| .||.|+||++..  .+..+|||+.....             ......+.+|...+.+ ++|++|  ++.+++...+ 
T Consensus        39 lg~~~g~gtv~~v~~--~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~-L~~~gi~vP~pl~~~~~~~  115 (239)
T PRK01723         39 VGSAKGRGTTWFVQT--PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQ-LYEAGLPVPRPIAARVVRH  115 (239)
T ss_pred             eecCCCCccEEEEEe--CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHH-HHhCCCCCceeEeeeeeec
Confidence            44 678888999876  47789998874321             0122346678877777 688775  7777765432 


Q ss_pred             C---eeEEEEEccCC-CCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccc
Q 002105          754 K---AAYLVYEYIEG-KELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL  829 (966)
Q Consensus       754 ~---~~~lv~Ey~~~-g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~  829 (966)
                      .   ..++||||++| ++|.+++......  ...+.+++.++++||   ..+|+||||||+|||++.+.  .+++.|||.
T Consensus       116 ~~~~~~~lV~e~l~G~~~L~~~l~~~~l~--~~~~~~i~~~l~~lH---~~GI~HrDlkp~NILv~~~~--~v~LIDfg~  188 (239)
T PRK01723        116 GLFYRADILIERIEGARDLVALLQEAPLS--EEQWQAIGQLIARFH---DAGVYHADLNAHNILLDPDG--KFWLIDFDR  188 (239)
T ss_pred             CcceeeeEEEEecCCCCCHHHHHhcCCCC--HHHHHHHHHHHHHHH---HCCCCCCCCCchhEEEcCCC--CEEEEECCC
Confidence            2   23599999997 6999988653211  234678999999999   66999999999999998654  578889987


Q ss_pred             ce
Q 002105          830 AY  831 (966)
Q Consensus       830 ~~  831 (966)
                      +.
T Consensus       189 ~~  190 (239)
T PRK01723        189 GE  190 (239)
T ss_pred             cc
Confidence            64

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.27  E-value=1.2e-11  Score=126.05  Aligned_cols=132  Identities=17%  Similarity=0.190  Sum_probs=87.4

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCccc--ccch----------------------HHHHHHHHhhcCCC--ce
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT--TSSF----------------------WPDVSQFGKLIMHP--NI  743 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~--~~~~----------------------~~e~~~~~~~~~H~--ni  743 (966)
                      .+|+|++|.||+|.. .+|..||||.+.......  ...+                      ..|...+.+ +.+.  .+
T Consensus         4 ~lg~G~~g~Vy~a~~-~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~~~~   81 (187)
T cd05119           4 PIGTGKEADVYLALD-GDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKR-LYEAGVPV   81 (187)
T ss_pred             ccccccceeEEEEEC-CCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHH-HHHcCCCC
Confidence            468999999999997 489999999875432111  1111                      123333333 2222  24


Q ss_pred             eEEeeEEecCCeeEEEEEccCCCCHHH-HHHcCCH-HHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCce
Q 002105          744 VRLHGVCRSEKAAYLVYEYIEGKELSE-VLRNLSW-ERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPH  821 (966)
Q Consensus       744 v~l~g~~~~~~~~~lv~Ey~~~g~L~~-~l~~l~~-~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~  821 (966)
                      .+.+++    ...++||||+++|++.. .+..... .+..+++.+++.++.++|.  ..+|+||||||+||+++ +  ..
T Consensus        82 ~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~lh~--~~~ivH~Dl~p~Nili~-~--~~  152 (187)
T cd05119          82 PKPIDL----NRHVLVMEFIGGDGIPAPRLKDVRLLEDPEELYDQILELMRKLYR--EAGLVHGDLSEYNILVD-D--GK  152 (187)
T ss_pred             CceEec----CCCEEEEEEeCCCCccChhhhhhhhcccHHHHHHHHHHHHHHHhh--ccCcCcCCCChhhEEEE-C--Cc
Confidence            444443    23589999999954321 1222222 5677899999999999994  16899999999999998 3  34


Q ss_pred             EEEecccccee
Q 002105          822 LRLSVPGLAYC  832 (966)
Q Consensus       822 ~~~~~~~~~~~  832 (966)
                      +++.|||.+..
T Consensus       153 ~~liDfg~a~~  163 (187)
T cd05119         153 VYIIDVPQAVE  163 (187)
T ss_pred             EEEEECccccc
Confidence            67889988753

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.18  E-value=3.3e-11  Score=138.25  Aligned_cols=176  Identities=36%  Similarity=0.531  Sum_probs=83.3

Q ss_pred             CCCcEEECCCCCCCCCCCC-CCCC-CCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEc
Q 002105          110 NSLRFLNLSNNNFTGPVPI-GSLS-RLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL  187 (966)
Q Consensus       110 ~~L~~L~Ls~N~l~~~~~~-~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  187 (966)
                      +.++.|++.+|.++...+. +.+. +|+.|++++|.+. .+|..+..+++|+.|++++|++. .+|...+.+++|+.|++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            4555555555555543332 2222 5555555555554 33344555555555555555554 33333334555555555


Q ss_pred             cCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCC
Q 002105          188 ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGS  267 (966)
Q Consensus       188 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  267 (966)
                      ++|++. .+|..+..+..|++|.+++|.+. ..+..+.++.++..|.+.+|++.. ++..+++++++++|++++|.++..
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i  270 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSI  270 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccc
Confidence            555554 24443334444555555555322 233444444555555555554442 234444455555555555554422


Q ss_pred             CChhhhcCCCCCEEEccCCcCcccC
Q 002105          268 IPKSILGLKSLVSFDLSDNYLSGEI  292 (966)
Q Consensus       268 ~p~~l~~l~~L~~L~Ls~N~l~~~~  292 (966)
                       +. ++.+.+++.|++++|.+....
T Consensus       271 -~~-~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         271 -SS-LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             -cc-ccccCccCEEeccCccccccc
Confidence             22 444455555555555444333

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.17  E-value=2.7e-11  Score=138.96  Aligned_cols=196  Identities=35%  Similarity=0.505  Sum_probs=108.8

Q ss_pred             EEECCCCCCCC-CCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCC-CcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCC
Q 002105          114 FLNLSNNNFTG-PVPIGSLSRLEILDLSNNMLSGKIPEEIGSFS-GLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQ  191 (966)
Q Consensus       114 ~L~Ls~N~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~  191 (966)
                      .|+++.|.+.. ..+...++.++.|++.+|.++ .+|.....+. +|+.|++++|.+. .+|..+.++++|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            46666666632 333455566777777777776 4555555553 6777777777665 344455666666666666666


Q ss_pred             CcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChh
Q 002105          192 LIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKS  271 (966)
Q Consensus       192 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  271 (966)
                      ++ .+|...+.++.|+.|++++|.++ .+|..+..+..|++|.+++|.+. ..+..+.++.++..+.+.+|++.. .+..
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~  250 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPES  250 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccch
Confidence            65 34444445566666666666665 45554444455666666666422 244445555555555555555542 2444


Q ss_pred             hhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCC
Q 002105          272 ILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIP  317 (966)
Q Consensus       272 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  317 (966)
                      +..+++++.|++++|.++.. +. +..+.+++.|++++|.+....|
T Consensus       251 ~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         251 IGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             hccccccceecccccccccc-cc-ccccCccCEEeccCccccccch
Confidence            55555555555555555422 22 4455555555555555544333

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.15  E-value=4e-12  Score=150.08  Aligned_cols=240  Identities=20%  Similarity=0.237  Sum_probs=159.9

Q ss_pred             ccccCCCCCccEEEEEEEec-CCcEEEEEEEeccCcccccchH---HHHHHHHhhcC-CCceeEEeeEEecCCeeEEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLA-NDMQFVVKKIIDVNTITTSSFW---PDVSQFGKLIM-HPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~-~~~~vavk~~~~~~~~~~~~~~---~e~~~~~~~~~-H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ....+|+|.++.|-...... ....+|+|.+....  ....+.   +.+..+.+.+. |+|++++++...+.+..+++.|
T Consensus        24 ~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~--~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~~~~  101 (601)
T KOG0590|consen   24 LSRSIGKGSFSSSALASNSRDPESSSATKPISIPP--KSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLLSLS  101 (601)
T ss_pred             ccccccccccchhhhhhhcCCCcceeeccCCCCCC--CccchhhhcCccccccccccccccccccCCccCCCcccccccC
Confidence            33446778887776655422 23345555543322  111111   11222333344 9999999999999999999999


Q ss_pred             ccCCCCHHHHH-H----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          762 YIEGKELSEVL-R----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       762 y~~~g~L~~~l-~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      |.+||++.+.+ +    ..+......+..|+..|+.|+|.  ..++.|||+||+|.+++.... .++..||+++....  
T Consensus       102 ~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~--~~~~~h~~ikP~n~~l~~s~~-~l~~~df~~At~~~~~  178 (601)
T KOG0590|consen  102 YSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHP--ENGVTHRDIKPSNSLLDESGS-ALKIADFGLATAYRNK  178 (601)
T ss_pred             cccccccccccccCCccCCCCcchhhhhhhhccCccccCc--ccccccCCCCCccchhccCCC-cccCCCchhhcccccc
Confidence            99999999888 4    24556677889999999999994  348999999999999997653 56788888875421  


Q ss_pred             -------CCCcC-CcccccccccCCCCC-CCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccc
Q 002105          835 -------SKSIN-SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVD  905 (966)
Q Consensus       835 -------~~~~~-~~~y~aPE~~~~~~~-~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  905 (966)
                             ...+| ++.|+|||...+..| ....|+||.|+++.-+++|..|++...........|....   ....  ..
T Consensus       179 ~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~---~~~~--~~  253 (601)
T KOG0590|consen  179 NGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKSNK---GRFT--QL  253 (601)
T ss_pred             CCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCccccccccccceeecccc---cccc--cC
Confidence                   12367 899999999887544 6688999999999999999999865432222222332211   0000  00


Q ss_pred             ccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 002105          906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVT  944 (966)
Q Consensus       906 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~  944 (966)
                      |  ....      -...+++...++..+|..|.+.+++.
T Consensus       254 ~--~~~~------~~~~~~~l~k~l~~~~~~r~s~~~~~  284 (601)
T KOG0590|consen  254 P--WNSI------SDQAHDLLHKILKENPSNRLSIEELK  284 (601)
T ss_pred             c--cccC------ChhhhhcccccccCCchhcccccccc
Confidence            0  0111      11344455677778999999987764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.97  E-value=7.3e-10  Score=135.58  Aligned_cols=164  Identities=27%  Similarity=0.369  Sum_probs=100.7

Q ss_pred             hcCCcHHHHHHHHHHhhcCCCCC-CCCCCC----CCCCCCCcccceeeCCCCCEEEEEcCCCCccccccccccCCCCCCE
Q 002105           15 FCTCHGAELELLLSFKSTVNDPY-NFLSNW----DSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVES   89 (966)
Q Consensus        15 ~~~~~~~~~~~Ll~~k~~~~~~~-~~l~~w----~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~   89 (966)
                      -|+-||..|+..+..-+.+.... +..-.=    ......=.|        ..+....+-+|.+.-. +.+ ...+.|++
T Consensus       480 ~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~--------~~~rr~s~~~~~~~~~-~~~-~~~~~L~t  549 (889)
T KOG4658|consen  480 TVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSW--------NSVRRMSLMNNKIEHI-AGS-SENPKLRT  549 (889)
T ss_pred             EEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccch--------hheeEEEEeccchhhc-cCC-CCCCccce
Confidence            46789999998888555332110 000000    000011122        1344455555554422 111 12347899


Q ss_pred             EEcCCCC--CccccChhhhhcCCCCcEEECCCCCCCCCCC--CCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccC
Q 002105           90 INLSSNQ--LSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGG  165 (966)
Q Consensus        90 L~Ls~N~--l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  165 (966)
                      |-+..|.  +. .++.++|..++.|++|||++|.=-+..|  ++.|-+|++|+|++..++ .+|..+.+|..|.+|++..
T Consensus       550 Lll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~  627 (889)
T KOG4658|consen  550 LLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEV  627 (889)
T ss_pred             EEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccc
Confidence            9999986  44 7888889988999999999865444444  477777777777777776 5777777777777777777


Q ss_pred             CCCcccCCcCCCCCCCCCEEEccCC
Q 002105          166 NVLVGEIPLSISNITSLQIFTLASN  190 (966)
Q Consensus       166 N~l~~~~p~~~~~l~~L~~L~L~~n  190 (966)
                      +.-...+|.....|++|++|.+..-
T Consensus       628 ~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  628 TGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccccccchhhhcccccEEEeecc
Confidence            6655455555555777777766543

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.95  E-value=6.3e-10  Score=125.25  Aligned_cols=190  Identities=20%  Similarity=0.157  Sum_probs=142.2

Q ss_pred             ccccccccCCCCCccEEEEEEEe-cCCcEEEEEEEeccCccc--ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          683 TTEENLTSRGKKGVSSSYKVRSL-ANDMQFVVKKIIDVNTIT--TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       683 ~~~~~~~~~g~~g~~~vy~~~~~-~~~~~vavk~~~~~~~~~--~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      ++...+..+|.+.++.||++... .++..+++|.+.+.-...  +..-..|+.....+..|.++|.++..+...+..|+=
T Consensus       265 ~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~ip  344 (524)
T KOG0601|consen  265 TDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYIP  344 (524)
T ss_pred             CCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccccccCc
Confidence            34566778899999999987754 577889999886543222  222356666666667899999999888888888899


Q ss_pred             EEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec---
Q 002105          760 YEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT---  833 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~---  833 (966)
                      -|||++++++..+.   .++...++++..+++.|+.++|   ++.++|+|+||+||++..++ ...++++++.....   
T Consensus       345 ~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~---s~~~~~~d~~psni~i~~~~-~~~~~~~~~~~t~~~~~  420 (524)
T KOG0601|consen  345 LEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTALNVIH---SKLFVHLDVKPSNILISNDG-FFSKLGDFGCWTRLAFS  420 (524)
T ss_pred             hhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhcccccc---chhhhcccccccceeeccch-hhhhcccccccccccee
Confidence            99999999876553   4788889999999999999999   77999999999999998753 33356777665321   


Q ss_pred             CCCCcCCcccc--cccccCCCCCCCcchHHHHHHHHHHHHcCCCC
Q 002105          834 DSKSINSSAYV--APETKESKDITEKGDIYGFGLILIDLLTGKSP  876 (966)
Q Consensus       834 ~~~~~~~~~y~--aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p  876 (966)
                      ........+|+  +|+......+-.++|+||||.-+.|.++|..-
T Consensus       421 ~~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~l  465 (524)
T KOG0601|consen  421 SGVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPL  465 (524)
T ss_pred             cccccccccccccchhhccccccccccccccccccccccccCccc
Confidence            11112233444  55555666778899999999999999998753

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.94  E-value=3e-09  Score=122.07  Aligned_cols=137  Identities=15%  Similarity=0.152  Sum_probs=92.1

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc----------------------------------------ccchH
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT----------------------------------------TSSFW  728 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~----------------------------------------~~~~~  728 (966)
                      .-+|+|++|.||+|+. .+|+.||||.........                                        +-+|.
T Consensus       123 ~plasaSigQVh~A~l-~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       123 KPLAAASIAQVHRARL-VDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             cceeeeehhheEEEEe-cCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            4578899999999997 789999999874321000                                        01244


Q ss_pred             HHHHHHHh---hcCCCceeEEeeEEec-CCeeEEEEEccCCCCHHHHHHc--CCHHHHHHHHHHHHH-HHHHHhhcCCCC
Q 002105          729 PDVSQFGK---LIMHPNIVRLHGVCRS-EKAAYLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAK-ALRFLHFHCSPS  801 (966)
Q Consensus       729 ~e~~~~~~---~~~H~niv~l~g~~~~-~~~~~lv~Ey~~~g~L~~~l~~--l~~~~~~~i~~~ia~-~l~yLH~~~~~~  801 (966)
                      .|...+.+   .++|.+-|.+-.+|.+ ....+|||||++|++|.++...  ... .+.+++..++. .+..+|   ..+
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~~~-~~~~ia~~~~~~~l~ql~---~~g  277 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAGL-DRKALAENLARSFLNQVL---RDG  277 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhcCC-CHHHHHHHHHHHHHHHHH---hCC
Confidence            44443333   2334444444444432 3457999999999999887642  111 34567777666 466777   559


Q ss_pred             eEeecCCCCcEEEcCCCCceEEEecccccee
Q 002105          802 VVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC  832 (966)
Q Consensus       802 iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~  832 (966)
                      ++|+|+||+||+++.+  ..+++.|||.+..
T Consensus       278 ~~H~D~hPgNilv~~~--g~i~liDfG~~~~  306 (437)
T TIGR01982       278 FFHADLHPGNIFVLKD--GKIIALDFGIVGR  306 (437)
T ss_pred             ceeCCCCcccEEECCC--CcEEEEeCCCeeE
Confidence            9999999999999865  4578899998754

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=1.6e-10  Score=123.66  Aligned_cols=40  Identities=20%  Similarity=0.255  Sum_probs=18.7

Q ss_pred             cCCCCCEEEccCCcCccc-CchhhcCCCCCceecccCCCCC
Q 002105          274 GLKSLVSFDLSDNYLSGE-IPEEVIQLQNLEILHLFSNNFT  313 (966)
Q Consensus       274 ~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~  313 (966)
                      ..++|++|++..|++..- .-..+..+.+|+.|.+..|.++
T Consensus       299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            344555555555555311 1122333455555555555554

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.91  E-value=7.8e-09  Score=103.37  Aligned_cols=127  Identities=20%  Similarity=0.150  Sum_probs=86.2

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCce-eEEeeEEecCCeeEEEEEccCCCCH
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNI-VRLHGVCRSEKAAYLVYEYIEGKEL  768 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~ni-v~l~g~~~~~~~~~lv~Ey~~~g~L  768 (966)
                      ..++|.++.||+++.  .+..+++|....... ....+..|...+.. +.+.++ .+++++..  +..++||||++|.++
T Consensus         5 ~l~~G~~~~vy~~~~--~~~~~~lK~~~~~~~-~~~~~~~E~~~l~~-l~~~~~~P~~~~~~~--~~~~lv~e~i~G~~l   78 (170)
T cd05151           5 PLKGGMTNKNYRVEV--ANKKYVVRIPGNGTE-LLINRENEAENSKL-AAEAGIGPKLYYFDP--ETGVLITEFIEGSEL   78 (170)
T ss_pred             ecCCcccCceEEEEE--CCeEEEEEeCCCCcc-cccCHHHHHHHHHH-HHHhCCCCceEEEeC--CCCeEEEEecCCCcc
Confidence            346677788999885  477899987643321 22345667766665 344443 45555543  345899999999988


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHhhcC--CCCeEeecCCCCcEEEcCCCCceEEEeccccc
Q 002105          769 SEVLRNLSWERRRKVAIGIAKALRFLHFHC--SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA  830 (966)
Q Consensus       769 ~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~--~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~  830 (966)
                      .+.    . .....++.+++++++.||...  ...++|+|+||+||++++   ..+++.||+.+
T Consensus        79 ~~~----~-~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~~---~~~~liDf~~a  134 (170)
T cd05151          79 LTE----D-FSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLDD---GRLWLIDWEYA  134 (170)
T ss_pred             ccc----c-ccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEEC---CeEEEEecccc
Confidence            653    1 112346678999999999643  234799999999999983   24678888764

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.90  E-value=4.9e-10  Score=110.34  Aligned_cols=126  Identities=31%  Similarity=0.361  Sum_probs=32.3

Q ss_pred             CCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCc-CCCCCcCEE
Q 002105           83 HLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEI-GSFSGLKVL  161 (966)
Q Consensus        83 ~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L  161 (966)
                      +...++.|+|.+|.|+ .|. .+...+.+|++|||++|.|+....+..+++|++|++++|+|+. +.+.+ ..+++|++|
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL   93 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred             cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence            3345566666666665 343 2222335555666666655543334445555555555555543 22222 234555555


Q ss_pred             EccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCc----CccCCCCCCEEEe
Q 002105          162 DLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPK----EIGDLTSLNHLDL  235 (966)
Q Consensus       162 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~L  235 (966)
                      +|++|++...-                       .-..+..+++|++|+|.+|.++.. +.    .+..+++|+.||-
T Consensus        94 ~L~~N~I~~l~-----------------------~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   94 YLSNNKISDLN-----------------------ELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             E-TTS---SCC-----------------------CCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred             ECcCCcCCChH-----------------------HhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence            55555443210                       112344555666666666655422 21    2445666666653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.90  E-value=1.6e-10  Score=117.28  Aligned_cols=128  Identities=27%  Similarity=0.316  Sum_probs=72.6

Q ss_pred             CCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEcc
Q 002105           85 PHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLG  164 (966)
Q Consensus        85 ~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  164 (966)
                      ..|+.||||+|.|+ .|..+ ....+.+++|++|+|.+........|.+|+.||||+|.++ .+..+-..|-+.++|.|+
T Consensus       284 q~LtelDLS~N~I~-~iDES-vKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDES-VKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhhccccccchh-hhhhh-hhhccceeEEeccccceeeehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            45677777777776 55544 3455777777777777765444566667777777777665 233444456666666666


Q ss_pred             CCCCcccCCcCCCCCCCCCEEEccCCCCccc-CCcccccCCcceEEEccCCCCC
Q 002105          165 GNVLVGEIPLSISNITSLQIFTLASNQLIGS-IPREIGQLRNLKWIYLGYNNLS  217 (966)
Q Consensus       165 ~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~  217 (966)
                      +|.+...  ..+..+-+|..||+++|++... --..+|+|+.|+++.|.+|.+.
T Consensus       361 ~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  361 QNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            6655311  2344445555555555555421 1233445555555555555444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=3.2e-10  Score=121.35  Aligned_cols=184  Identities=27%  Similarity=0.324  Sum_probs=87.4

Q ss_pred             cCCCCCCEEEcCCCCCccccC-hhhhhcCCCCcEEECCCCCCCCCCC---CCCCCCCcEEeCCCCCCCCcCCCCcCCCCC
Q 002105           82 FHLPHVESINLSSNQLSGEIP-SDIFSSSNSLRFLNLSNNNFTGPVP---IGSLSRLEILDLSNNMLSGKIPEEIGSFSG  157 (966)
Q Consensus        82 ~~l~~L~~L~Ls~N~l~g~ip-~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  157 (966)
                      ..+++++.||||.|-|+..-| ..+...+++|+.|+|+.|++.-+..   ...+                        ++
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l------------------------~~  198 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL------------------------SH  198 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh------------------------hh
Confidence            445555555555555542222 2333444555555555555542211   1334                        44


Q ss_pred             cCEEEccCCCCcc-cCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCC--cCccCCCCCCEEE
Q 002105          158 LKVLDLGGNVLVG-EIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIP--KEIGDLTSLNHLD  234 (966)
Q Consensus       158 L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~  234 (966)
                      |+.|.|++|.++. .+......+++|+.|+|..|.....-.....-++.|++|+|++|++-. .+  ...+.++.|+.|+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhh
Confidence            4555555544431 111122334555555555553222222223334555566666555532 22  2345566666666


Q ss_pred             eeccccccc-CCcC-----CCCCCccceEeccccccCCC-CChhhhcCCCCCEEEccCCcCcc
Q 002105          235 LVYNNLTGQ-IPPS-----FGNLSNLRYLFLYQNKLTGS-IPKSILGLKSLVSFDLSDNYLSG  290 (966)
Q Consensus       235 Ls~N~l~~~-~p~~-----~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~  290 (966)
                      ++.+.+... .|+.     ...+++|++|++..|++... .-..+..+.+|+.|.+..|+++.
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            666655532 2222     23456677777777766321 11234445666666666776653

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.87  E-value=4.2e-09  Score=118.75  Aligned_cols=181  Identities=19%  Similarity=0.211  Sum_probs=134.5

Q ss_pred             CCC--CCccEEEEEEE--ecCCcEEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          691 RGK--KGVSSSYKVRS--LANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       691 ~g~--~g~~~vy~~~~--~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .|.  |++|.||+++.  ..++..+|+|+-...  .......-.+|.....+.-.|+|.|+.+..+.+.+..|+-.|+|.
T Consensus       122 ~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lfiqtE~~~  201 (524)
T KOG0601|consen  122 TGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGILFIQTELCG  201 (524)
T ss_pred             cccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCcceeeecccc
Confidence            456  88999999998  788899999984332  223333345555555554469999999999999999999999987


Q ss_pred             CCCHHHHHHc----CCHHHHHHHHHHHHH----HHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-
Q 002105          765 GKELSEVLRN----LSWERRRKVAIGIAK----ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-  835 (966)
Q Consensus       765 ~g~L~~~l~~----l~~~~~~~i~~~ia~----~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-  835 (966)
                       .+|.++.+.    ++......+..+..+    |+.++|   ...++|-|+||+||.+.++. ...+.++|++...... 
T Consensus       202 -~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~h---s~~~~~~~~kp~~i~~~~~~-~s~~~~df~~v~~i~~~  276 (524)
T KOG0601|consen  202 -ESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHLH---SNNIVHDDLKPANIFTTSDW-TSCKLTDFGLVSKISDG  276 (524)
T ss_pred             -chhHHhhhcccccCCchhhhhHHhhhhhcccccccccC---CCcccccccchhheeccccc-ceeecCCcceeEEccCC
Confidence             788888763    444555666666666    999999   77999999999999998763 2234666666543211 


Q ss_pred             ----------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCC
Q 002105          836 ----------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPA  877 (966)
Q Consensus       836 ----------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~  877 (966)
                                ...|...|++||...+ .++.++||||+|.+..|..+|..+.
T Consensus       277 ~~~~~~~~~~r~~~~~~Y~~ke~~~~-l~~~~~di~sl~ev~l~~~l~~~~~  327 (524)
T KOG0601|consen  277 NFSSVFKVSKRPEGDCIYAAKELLNG-LATFASDIFSLGEVILEAILGSHLP  327 (524)
T ss_pred             ccccceeeeecCCCCceEeChhhhcc-ccchHhhhcchhhhhHhhHhhcccc
Confidence                      1145667999998764 5688999999999999999987654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.85  E-value=3.6e-10  Score=129.87  Aligned_cols=224  Identities=29%  Similarity=0.330  Sum_probs=96.2

Q ss_pred             CCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceE
Q 002105          129 GSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKW  208 (966)
Q Consensus       129 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  208 (966)
                      ..+.+|+.|++.+|+|.+ +...+..+++|++|+|++|.|+...  .+..++.|+.|++++|.++.  ...+..++.|+.
T Consensus        92 ~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~  166 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD--ISGLESLKSLKL  166 (414)
T ss_pred             ccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheeccCcchh--ccCCccchhhhc
Confidence            333444444444444432 1111334444444444444443322  12333334444444444432  122233444555


Q ss_pred             EEccCCCCCCCCC-cCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCC--CCCEEEccC
Q 002105          209 IYLGYNNLSGEIP-KEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLK--SLVSFDLSD  285 (966)
Q Consensus       209 L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~  285 (966)
                      +++++|.+...-+ . ...+.+++.+++..|.+..  ...+..+..+..+++..|.++..-+  +..+.  .|+.+++++
T Consensus       167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~  241 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSG  241 (414)
T ss_pred             ccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhccc
Confidence            5555554442222 1 3444455555555554431  1222233333334445554442211  11111  255555555


Q ss_pred             CcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCccc---CCc-cccCCCCCcEEEccCCccc
Q 002105          286 NYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGE---IPS-NLGKQNNLTVIDLSTNFLT  361 (966)
Q Consensus       286 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~---~p~-~~~~~~~L~~L~Ls~N~l~  361 (966)
                      |.+. ..+..+..+..+..|++.+|++...-  .+...+.+..+.+..|.+...   ... .......++.+.+..|.+.
T Consensus       242 n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (414)
T KOG0531|consen  242 NRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIR  318 (414)
T ss_pred             Cccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccc
Confidence            5554 22234445555666666666554321  123344455555555554311   111 1345556666777777666


Q ss_pred             ccCC
Q 002105          362 GKIP  365 (966)
Q Consensus       362 ~~~p  365 (966)
                      ...+
T Consensus       319 ~~~~  322 (414)
T KOG0531|consen  319 KISS  322 (414)
T ss_pred             cccc
Confidence            5444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.84  E-value=3.9e-10  Score=129.58  Aligned_cols=170  Identities=28%  Similarity=0.399  Sum_probs=72.1

Q ss_pred             CCCcEEECCCCCCCCCCC-CCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEcc
Q 002105          110 NSLRFLNLSNNNFTGPVP-IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLA  188 (966)
Q Consensus       110 ~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  188 (966)
                      ++|+.|++.+|+|..... ...+.+|++|||++|.|+...  .+..++.|+.|++++|.++..  ..+..++.|+.++++
T Consensus        95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLS  170 (414)
T ss_pred             cceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCC
Confidence            455555555555544433 344555555555555554321  233444455555555544321  123334455555555


Q ss_pred             CCCCcccCC-cccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCC--ccceEeccccccC
Q 002105          189 SNQLIGSIP-REIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLS--NLRYLFLYQNKLT  265 (966)
Q Consensus       189 ~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~n~l~  265 (966)
                      +|++...-+ . ...+.+++.++++.|.+.  ....+..+..+..+++..|.++..-+  +..+.  +|+.+++++|.+.
T Consensus       171 ~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~--~i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~  245 (414)
T KOG0531|consen  171 YNRIVDIENDE-LSELISLEELDLGGNSIR--EIEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS  245 (414)
T ss_pred             cchhhhhhhhh-hhhccchHHHhccCCchh--cccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc
Confidence            555443222 1 234444455555555443  11222233333333444444442211  11111  2445555555443


Q ss_pred             CCCChhhhcCCCCCEEEccCCcCc
Q 002105          266 GSIPKSILGLKSLVSFDLSDNYLS  289 (966)
Q Consensus       266 ~~~p~~l~~l~~L~~L~Ls~N~l~  289 (966)
                      . .+..+..+..+..|++.+|++.
T Consensus       246 ~-~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  246 R-SPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             c-ccccccccccccccchhhcccc
Confidence            1 1233344444555555554443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.84  E-value=6.3e-10  Score=113.04  Aligned_cols=134  Identities=31%  Similarity=0.333  Sum_probs=80.9

Q ss_pred             CccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCC
Q 002105          223 EIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNL  302 (966)
Q Consensus       223 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  302 (966)
                      .+...+.|++||||+|.|+ .+..+..-+++++.|++++|.+...  ..+..+++|+.||||+|.++ .+..+-..+.++
T Consensus       279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI  354 (490)
T ss_pred             ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence            3444566777777777776 4555666667777777777776532  23666777777777777766 344455566677


Q ss_pred             ceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccC-CccccCCCCCcEEEccCCcccc
Q 002105          303 EILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEI-PSNLGKQNNLTVIDLSTNFLTG  362 (966)
Q Consensus       303 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~~~~~~~L~~L~Ls~N~l~~  362 (966)
                      +.|.|+.|.+..  -+.++.+-+|..||+++|++...- -..+++++.|+.+.|.+|.+.+
T Consensus       355 KtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  355 KTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            777777776642  123455556666666666664211 1345555556666666665553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.83  E-value=1.9e-09  Score=132.00  Aligned_cols=104  Identities=30%  Similarity=0.411  Sum_probs=56.1

Q ss_pred             CCcEEeCCCCC--CCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEE
Q 002105          133 RLEILDLSNNM--LSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIY  210 (966)
Q Consensus       133 ~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  210 (966)
                      .|++|-+..|.  +....++.|..++.|++|||++|.--+.+|.++++|-+|++|+++...+. .+|..+++|+.|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            45555555553  33222333555666666666665544555666666666666666655555 4555566666666666


Q ss_pred             ccCCCCCCCCCcCccCCCCCCEEEeec
Q 002105          211 LGYNNLSGEIPKEIGDLTSLNHLDLVY  237 (966)
Q Consensus       211 L~~N~l~~~~p~~l~~l~~L~~L~Ls~  237 (966)
                      +..+.-...+|.....|++|++|.+..
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             cccccccccccchhhhcccccEEEeec
Confidence            655544333444444555555555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.80  E-value=2.1e-09  Score=105.91  Aligned_cols=83  Identities=30%  Similarity=0.500  Sum_probs=17.5

Q ss_pred             CCCCCcEEeCCCCCCCCcCCCCcC-CCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCccc-ccCCcce
Q 002105          130 SLSRLEILDLSNNMLSGKIPEEIG-SFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREI-GQLRNLK  207 (966)
Q Consensus       130 ~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~  207 (966)
                      +..++++|+|++|.|+. + +.++ .+.+|+.|+|++|.++..  ..+..++.|++|++++|+++. +.+.+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence            33445555566655542 2 2333 355566666666655532  134445555555555555553 22222 2355566


Q ss_pred             EEEccCCCCC
Q 002105          208 WIYLGYNNLS  217 (966)
Q Consensus       208 ~L~L~~N~l~  217 (966)
                      +|+|++|++.
T Consensus        92 ~L~L~~N~I~  101 (175)
T PF14580_consen   92 ELYLSNNKIS  101 (175)
T ss_dssp             EEE-TTS---
T ss_pred             EEECcCCcCC
Confidence            6666666554

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.79  E-value=3.6e-08  Score=112.08  Aligned_cols=165  Identities=24%  Similarity=0.280  Sum_probs=116.7

Q ss_pred             EEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCHHHHHHcCCHHHHH
Q 002105          702 VRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRR  781 (966)
Q Consensus       702 ~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L~~~l~~l~~~~~~  781 (966)
                      |..+.++..|.|...............+.++.+.. +|||||+++++.+.+++..|||+|-+.  -|..+++++......
T Consensus        31 ~t~k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKt-lRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~l~~~~v~  107 (690)
T KOG1243|consen   31 GTRKADGGPVSVFVYKRSNGEVTELAKRAVKRLKT-LRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKELGKEEVC  107 (690)
T ss_pred             cceeccCCceEEEEEeCCCchhhHHHHHHHHHhhh-ccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHHhHHHHHH
Confidence            44557888888888765544212223344445544 799999999999999999999999985  688888887766666


Q ss_pred             HHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCCCc------CCcccccccccCCCCCC
Q 002105          782 KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSI------NSSAYVAPETKESKDIT  855 (966)
Q Consensus       782 ~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~~~------~~~~y~aPE~~~~~~~~  855 (966)
                      -.+.||+.||.|||+.|  .++|++|--+-|.++..++  .+++.+......+....      .--.|..|+.+....  
T Consensus       108 ~Gl~qIl~AL~FL~~d~--~lvHgNv~~~SVfVn~~Ge--WkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~~~s~--  181 (690)
T KOG1243|consen  108 LGLFQILAALSFLNDDC--NLVHGNVCKDSVFVNESGE--WKLGGLELVSKASGFNAPAKSLYLIESFDDPEEIDPSE--  181 (690)
T ss_pred             HHHHHHHHHHHHHhccC--CeeeccEeeeeEEEcCCCc--EEEeeeEEEeccccCCcccccchhhhcccChhhcCccc--
Confidence            67889999999999754  7999999999999997665  45555544432211110      011355565443322  


Q ss_pred             CcchHHHHHHHHHHHHcCCC
Q 002105          856 EKGDIYGFGLILIDLLTGKS  875 (966)
Q Consensus       856 ~~~Dv~S~Gv~l~el~tg~~  875 (966)
                      -..|.|-||++++|++.|..
T Consensus       182 ~s~D~~~Lg~li~el~ng~~  201 (690)
T KOG1243|consen  182 WSIDSWGLGCLIEELFNGSL  201 (690)
T ss_pred             cchhhhhHHHHHHHHhCccc
Confidence            24599999999999999943

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.77  E-value=4.8e-08  Score=113.35  Aligned_cols=141  Identities=15%  Similarity=0.137  Sum_probs=89.2

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc--------------------------c--------------ccchH
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--------------------------T--------------TSSFW  728 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--------------------------~--------------~~~~~  728 (966)
                      ...|+|++|.||+|+...+|+.||||.....-..                          .              +-+|.
T Consensus       125 ~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~ElD~~  204 (537)
T PRK04750        125 KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLHDELDLM  204 (537)
T ss_pred             hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHhhCHH
Confidence            5678999999999998555999999988533100                          0              11344


Q ss_pred             HHHHHHHh---hcCCCceeEEeeEEec-CCeeEEEEEccCCCCHHHH--HHcCCHHHHHHHHHHHHHHHHHHhhcCCCCe
Q 002105          729 PDVSQFGK---LIMHPNIVRLHGVCRS-EKAAYLVYEYIEGKELSEV--LRNLSWERRRKVAIGIAKALRFLHFHCSPSV  802 (966)
Q Consensus       729 ~e~~~~~~---~~~H~niv~l~g~~~~-~~~~~lv~Ey~~~g~L~~~--l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~i  802 (966)
                      .|...+.+   ...|.+.|.+-.+|.+ ....+|||||++|+.+.++  ++.-. ..+..++...++.  |++.-...++
T Consensus       205 ~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g-~d~~~la~~~v~~--~~~Qif~~Gf  281 (537)
T PRK04750        205 REAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAG-TDMKLLAERGVEV--FFTQVFRDGF  281 (537)
T ss_pred             HHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcC-CCHHHHHHHHHHH--HHHHHHhCCe
Confidence            55544333   2335555655555543 3567899999999999874  22211 0122333322222  2222224599


Q ss_pred             EeecCCCCcEEEcCCC--CceEEEecccccee
Q 002105          803 VAGDVSPGKVIVDGKD--EPHLRLSVPGLAYC  832 (966)
Q Consensus       803 iHrDlk~~Nill~~~~--~~~~~~~~~~~~~~  832 (966)
                      +|+|+||+||+++.+.  .+++.+.|||+...
T Consensus       282 fHaDpHPGNIlv~~~g~~~~~i~llDFGivg~  313 (537)
T PRK04750        282 FHADMHPGNIFVSYDPPENPRYIALDFGIVGS  313 (537)
T ss_pred             eeCCCChHHeEEecCCCCCCeEEEEecceEEE
Confidence            9999999999998653  35788999998754

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.76  E-value=9e-09  Score=76.27  Aligned_cols=40  Identities=38%  Similarity=0.909  Sum_probs=31.2

Q ss_pred             cHHHHHHHHHHhhcCC-CCCCCCCCCCCC--CCCCcccceeeC
Q 002105           19 HGAELELLLSFKSTVN-DPYNFLSNWDSS--VTFCKWNGISCQ   58 (966)
Q Consensus        19 ~~~~~~~Ll~~k~~~~-~~~~~l~~w~~~--~~~c~w~gv~c~   58 (966)
                      ++.|++||++||+++. +|.+.+.+|+..  .+||+|.||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             CcHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            5789999999999998 577899999876  699999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.73  E-value=8e-08  Score=100.64  Aligned_cols=139  Identities=19%  Similarity=0.263  Sum_probs=99.9

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCC--CceeEEeeEEecC---CeeEEEEEcc
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMH--PNIVRLHGVCRSE---KAAYLVYEYI  763 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H--~niv~l~g~~~~~---~~~~lv~Ey~  763 (966)
                      .++.|..+.||++.. .+|..+++|....... .....+..|.+.+.. +++  .++.++++++...   +..++||||+
T Consensus         5 ~l~~G~~n~~~~v~~-~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~-l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i   82 (223)
T cd05154           5 QLSGGQSNLTYLLTA-GGGRRLVLRRPPPGALLPSAHDVAREYRVLRA-LAGTGVPVPKVLALCEDPSVLGTPFYVMERV   82 (223)
T ss_pred             ecCCCccceEEEEEe-cCCcceEEEeCCCcccCcccccHHHHHHHHHH-hhCCCCCCCCEEEECCCCCccCCceEEEEEe
Confidence            356677788999987 5567899987643322 134456777766655 454  4467777777654   3678999999


Q ss_pred             CCCCHHHHH--HcCCHHHHHHHHHHHHHHHHHHhhc--------------------------------------------
Q 002105          764 EGKELSEVL--RNLSWERRRKVAIGIAKALRFLHFH--------------------------------------------  797 (966)
Q Consensus       764 ~~g~L~~~l--~~l~~~~~~~i~~~ia~~l~yLH~~--------------------------------------------  797 (966)
                      +|+++.+.+  ..++..++..++.+++++|++||..                                            
T Consensus        83 ~G~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (223)
T cd05154          83 DGRVLRDRLLRPELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERLLR  162 (223)
T ss_pred             CCEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence            999988765  3577788888999999999999842                                            


Q ss_pred             ---------CCCCeEeecCCCCcEEEcCCCCceEEEeccccc
Q 002105          798 ---------CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA  830 (966)
Q Consensus       798 ---------~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~  830 (966)
                               ....++|+|++|.||+++.+....+.+.|++.+
T Consensus       163 ~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~  204 (223)
T cd05154         163 WLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELA  204 (223)
T ss_pred             HHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEecccc
Confidence                     135689999999999998742334567777654

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.70  E-value=1.5e-09  Score=113.39  Aligned_cols=137  Identities=23%  Similarity=0.310  Sum_probs=63.5

Q ss_pred             CCCccEEEccCCcCccc----CCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccC
Q 002105          323 MPKLQVLQLWSNQFSGE----IPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSL  398 (966)
Q Consensus       323 l~~L~~L~L~~N~l~~~----~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L  398 (966)
                      -++|+++...+|++...    +-..|...+.|+.+.++.|.+...--.                    .+-..+..|++|
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~--------------------al~eal~~~~~L  215 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVT--------------------ALAEALEHCPHL  215 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhH--------------------HHHHHHHhCCcc
Confidence            35566666666665321    112334445566666666655311000                    011233445555


Q ss_pred             ceeeccccccCCc----CChhhcCCCcccEEcccCCCCCCccCcchh-----ccCCCcEecCCCCcCCccCCC-----Cc
Q 002105          399 RRVRLQNNRLSGE----LSSEFTRLPLVYFLDISGNDLSGRIGEQKW-----EMTSLQMLNLAGNNFSGKLPD-----SF  464 (966)
Q Consensus       399 ~~L~L~~N~l~~~----~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~p~-----~~  464 (966)
                      +.|||.+|.++..    +...+..+++|+.|+++++.+...-...+.     ..++|++|.|.+|.++..--.     ..
T Consensus       216 evLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~  295 (382)
T KOG1909|consen  216 EVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMA  295 (382)
T ss_pred             eeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHh
Confidence            5555555555422    223344455555555555555432221111     245566666666665421100     11


Q ss_pred             Ccccccccccccccc
Q 002105          465 GSDQLENLDLSENRF  479 (966)
Q Consensus       465 ~~~~L~~L~Ls~N~l  479 (966)
                      ..+.|..|+|++|++
T Consensus       296 ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  296 EKPDLEKLNLNGNRL  310 (382)
T ss_pred             cchhhHHhcCCcccc
Confidence            235566666666666

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.63  E-value=3.4e-09  Score=110.81  Aligned_cols=165  Identities=20%  Similarity=0.273  Sum_probs=80.6

Q ss_pred             ccCccCceeeccccccCCcCChh-------------hcCCCcccEEcccCCCCCCccC----cchhccCCCcEecCCCCc
Q 002105          393 STCKSLRRVRLQNNRLSGELSSE-------------FTRLPLVYFLDISGNDLSGRIG----EQKWEMTSLQMLNLAGNN  455 (966)
Q Consensus       393 ~~l~~L~~L~L~~N~l~~~~~~~-------------~~~l~~L~~LdLs~N~l~~~~~----~~~~~l~~L~~L~Ls~N~  455 (966)
                      .++.+|++|.|.+|.+.-.-...             ...-+.|++++.++|++.....    ..+...+.|+.+.++.|.
T Consensus       117 ~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~  196 (382)
T KOG1909|consen  117 SSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNG  196 (382)
T ss_pred             HhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccc
Confidence            45677777777777665222111             1223455566666665543211    122333455555555554


Q ss_pred             CCccCCCCcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCC----ChhhccccccccccccCCceecccc
Q 002105          456 FSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGD----IPEELSSCKKLVSLDLSNNQLSGHI  531 (966)
Q Consensus       456 l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~  531 (966)
                      |...--.                   .+-..|..++.|+.|||..|.++-.    +...+..++.|+.|+++++.+...-
T Consensus       197 I~~eG~~-------------------al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G  257 (382)
T KOG1909|consen  197 IRPEGVT-------------------ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG  257 (382)
T ss_pred             ccCchhH-------------------HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence            4311000                   0112234455555555555554321    2233444555566666655554321


Q ss_pred             Ccc----C-CCCCCCcEEeCCCCcCccc----CCcccccCCCCCeeeCcCCccc
Q 002105          532 PAS----L-SEMPVLGQLDLSENQLSGK----IPQTLGRVASLVQVNISHNHFH  576 (966)
Q Consensus       532 p~~----l-~~l~~L~~LdLs~N~l~g~----~p~~l~~l~~L~~l~ls~N~l~  576 (966)
                      -..    + ...+.|++|.+.+|.++..    +-..+...+.|..|+|++|.|.
T Consensus       258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            111    1 2246677777777776531    2223344667778888888773

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.63  E-value=2.4e-08  Score=80.75  Aligned_cols=59  Identities=42%  Similarity=0.566  Sum_probs=31.0

Q ss_pred             CCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCCc
Q 002105          492 ELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQ  550 (966)
Q Consensus       492 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~  550 (966)
                      +|+.|++++|+++...+..|.++++|++|++++|+++...|..|..+++|+.|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34555555555554444455555555555555555554445555555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.57  E-value=5.4e-08  Score=78.74  Aligned_cols=59  Identities=37%  Similarity=0.537  Sum_probs=35.6

Q ss_pred             CCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCC
Q 002105          133 RLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQ  191 (966)
Q Consensus       133 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~  191 (966)
                      +|++|++++|+++...++.|..+++|++|++++|.+....|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45666666666665555566666666666666666655555556666666666666554

...

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.53  E-value=1.2e-06  Score=96.56  Aligned_cols=162  Identities=24%  Similarity=0.340  Sum_probs=119.4

Q ss_pred             EEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEec----CCeeEEEEEccCC-CCHHHHH
Q 002105          698 SSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS----EKAAYLVYEYIEG-KELSEVL  772 (966)
Q Consensus       698 ~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~----~~~~~lv~Ey~~~-g~L~~~l  772 (966)
                      ..||+....+|..++.||+.............-++++.+ +.|+|||++.+++..    +..+.+||+|.|+ ++|.++-
T Consensus       291 Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkk-l~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~~  369 (655)
T KOG3741|consen  291 TTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKK-LCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDLY  369 (655)
T ss_pred             eeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHH-hccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHHH
Confidence            489999999999999999954444444344455667777 689999999998873    4568999999985 6776643


Q ss_pred             H------------------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          773 R------------------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       773 ~------------------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      -                  ..++...+.++.|++.||.++|   +.|...+-+-|.+||++++.  +++++..|+.....
T Consensus       370 F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIH---ssGLAck~L~~~kIlv~G~~--RIriS~C~i~Dvl~  444 (655)
T KOG3741|consen  370 FANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIH---SSGLACKTLDLKKILVTGKM--RIRISGCGIMDVLQ  444 (655)
T ss_pred             ccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHH---hcCceeecccHhHeEeeCcc--eEEEecccceeeec
Confidence            1                  1456778899999999999999   45888899999999999654  67777666654322


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCC
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP  876 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p  876 (966)
                      ...      .  |-+..   -.+-|.=.||.+++.|.||..-
T Consensus       445 ~d~------~--~~le~---~Qq~D~~~lG~ll~aLAt~~~n  475 (655)
T KOG3741|consen  445 EDP------T--EPLES---QQQNDLRDLGLLLLALATGTEN  475 (655)
T ss_pred             CCC------C--cchhH---HhhhhHHHHHHHHHHHhhcccc
Confidence            111      0  11211   1356888999999999999543

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.51  E-value=1.4e-06  Score=87.82  Aligned_cols=95  Identities=12%  Similarity=0.135  Sum_probs=66.5

Q ss_pred             HHHHHHHhhcCC-CceeEEeeEEecCCeeEEEEEccCCCCHH-HHHHc--CCHHHHHHHHHHHHHHHHHH-hhcCCCCeE
Q 002105          729 PDVSQFGKLIMH-PNIVRLHGVCRSEKAAYLVYEYIEGKELS-EVLRN--LSWERRRKVAIGIAKALRFL-HFHCSPSVV  803 (966)
Q Consensus       729 ~e~~~~~~~~~H-~niv~l~g~~~~~~~~~lv~Ey~~~g~L~-~~l~~--l~~~~~~~i~~~ia~~l~yL-H~~~~~~ii  803 (966)
                      +|...+.++-.+ -++.+.+++    ..-+|||||+.++.+. ..++.  ++..+..++..+++.+|.++ |   ..+||
T Consensus        75 kE~r~L~rl~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd~~~~~~~~~~i~~~i~~~l~~l~H---~~glV  147 (197)
T cd05146          75 KEMHNLKRMQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLYK---ECNLV  147 (197)
T ss_pred             HHHHHHHHHHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhccccCHHHHHHHHHHHHHHHHHHHH---hCCee
Confidence            566666664222 456666654    4568999999876442 23443  33345567788999999999 6   45999


Q ss_pred             eecCCCCcEEEcCCCCceEEEeccccceec
Q 002105          804 AGDVSPGKVIVDGKDEPHLRLSVPGLAYCT  833 (966)
Q Consensus       804 HrDlk~~Nill~~~~~~~~~~~~~~~~~~~  833 (966)
                      |+|+++.||++++   .++.+.||+.+...
T Consensus       148 HGDLs~~NIL~~~---~~v~iIDF~qav~~  174 (197)
T cd05146         148 HADLSEYNMLWHD---GKVWFIDVSQSVEP  174 (197)
T ss_pred             cCCCCHHHEEEEC---CcEEEEECCCceeC
Confidence            9999999999974   24678899977544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.44  E-value=1.9e-07  Score=110.77  Aligned_cols=138  Identities=25%  Similarity=0.344  Sum_probs=103.6

Q ss_pred             CCCceeEEeeEEecCCeeEEEEEccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEc
Q 002105          739 MHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVD  815 (966)
Q Consensus       739 ~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~  815 (966)
                      +||-+|+..--+......++||+|..+|+|...|+.   .+....+.....+..+.+|||   ...++|||+||.|++..
T Consensus       862 ~~P~v~~~~~s~~~rsP~~L~~~~~~~~~~~Skl~~~~~~saepaRs~i~~~vqs~e~L~---s~~r~h~~~~p~~~l~~  938 (1205)
T KOG0606|consen  862 RSPAVVRSFPSFPCRSPLPLVGHYLNGGDLPSKLHNSGCLSAEPARSPILERVQSLESLH---SSLRKHRDLKPDSLLIA  938 (1205)
T ss_pred             CCCceecccCCCCCCCCcchhhHHhccCCchhhhhcCCCcccccccchhHHHHhhhhccc---cchhhcccccccchhhc
Confidence            456666655444445678999999999999999986   344445556667889999999   44689999999999986


Q ss_pred             CCCCceEEEeccccce---------------------e----------------cCCCCcCCcccccccccCCCCCCCcc
Q 002105          816 GKDEPHLRLSVPGLAY---------------------C----------------TDSKSINSSAYVAPETKESKDITEKG  858 (966)
Q Consensus       816 ~~~~~~~~~~~~~~~~---------------------~----------------~~~~~~~~~~y~aPE~~~~~~~~~~~  858 (966)
                      .+.  +.+..+++...                     .                ......+|+.|.|||...+......+
T Consensus       939 ~~g--h~~l~~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~a 1016 (1205)
T KOG0606|consen  939 YDG--HRPLTDFGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAA 1016 (1205)
T ss_pred             ccC--CcccCccccccccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcc
Confidence            443  22333332100                     0                01234678999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCCC
Q 002105          859 DIYGFGLILIDLLTGKSPADADF  881 (966)
Q Consensus       859 Dv~S~Gv~l~el~tg~~p~~~~~  881 (966)
                      |.|++|++++|.++|.+||....
T Consensus      1017 d~~~~g~~l~e~l~g~pp~na~t 1039 (1205)
T KOG0606|consen 1017 DWWSSGVCLFEVLTGIPPFNAET 1039 (1205)
T ss_pred             hhhhhhhhhhhhhcCCCCCCCcc
Confidence            99999999999999999998653

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.34  E-value=4.7e-06  Score=80.90  Aligned_cols=128  Identities=19%  Similarity=0.214  Sum_probs=85.9

Q ss_pred             CCCCccEEEEEEEecCCcEEEEEEEeccCcc--------cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--------TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       692 g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--------~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ++|+-+.+|.+..  -|..+++|.-..+.-.        ....-..|...+.+. +--.|-.-+=+..+++...|+|||+
T Consensus         5 ~~GAEa~i~~~~~--~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a-~~~GV~~P~v~dvD~~~~~I~me~I   81 (204)
T COG3642           5 KQGAEAIIYLTDF--LGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKA-REAGVPVPIVYDVDPDNGLIVMEYI   81 (204)
T ss_pred             hCCcceeEEeeec--cCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHH-HHcCCCCCeEEEEcCCCCEEEEEEe
Confidence            4566667888754  4545566644332111        112345666666663 3222222222334566778999999


Q ss_pred             CCCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee
Q 002105          764 EGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC  832 (966)
Q Consensus       764 ~~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~  832 (966)
                      +|-.|.+++..-    +..++..|-.-+.-||   ..+|||+|+.++||++.++.   +-+.|||++..
T Consensus        82 ~G~~lkd~l~~~----~~~~~r~vG~~vg~lH---~~givHGDLTtsNiIl~~~~---i~~IDfGLg~~  140 (204)
T COG3642          82 EGELLKDALEEA----RPDLLREVGRLVGKLH---KAGIVHGDLTTSNIILSGGR---IYFIDFGLGEF  140 (204)
T ss_pred             CChhHHHHHHhc----chHHHHHHHHHHHHHH---hcCeecCCCccceEEEeCCc---EEEEECCcccc
Confidence            999888888643    5677888888899999   66999999999999998653   67889999864

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.23  E-value=1.2e-05  Score=85.86  Aligned_cols=124  Identities=10%  Similarity=0.063  Sum_probs=84.9

Q ss_pred             EEEEEEecCCcEEEEEEEeccCcc-----------cccchHHHHHHHHhh----cCCCceeEEeeEEec-----CCeeEE
Q 002105          699 SYKVRSLANDMQFVVKKIIDVNTI-----------TTSSFWPDVSQFGKL----IMHPNIVRLHGVCRS-----EKAAYL  758 (966)
Q Consensus       699 vy~~~~~~~~~~vavk~~~~~~~~-----------~~~~~~~e~~~~~~~----~~H~niv~l~g~~~~-----~~~~~l  758 (966)
                      |+++.  .+|+.+.||+.......           ....+.+|...+.++    +.-|.+|.   +...     ....++
T Consensus        38 vvr~~--~~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa---~~e~~~~~~~~~s~L  112 (268)
T PRK15123         38 TLRFE--LAGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVA---FGERGSNPATRTSFI  112 (268)
T ss_pred             EEEEE--ECCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeE---EEEecCCCccceeEE
Confidence            56654  46778899976432210           111367787777664    22343343   3332     235789


Q ss_pred             EEEccCCC-CHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcC-----CCCceEEEecc
Q 002105          759 VYEYIEGK-ELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDG-----KDEPHLRLSVP  827 (966)
Q Consensus       759 v~Ey~~~g-~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~-----~~~~~~~~~~~  827 (966)
                      ||||+++- +|.+++..     .+...+..++.+++..++-||   ..+|+|+|++++|||++.     +....+.+.|+
T Consensus       113 Vte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH---~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl  189 (268)
T PRK15123        113 ITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMH---AAGINHRDCYICHFLLHLPFPGREEDLKLSVIDL  189 (268)
T ss_pred             EEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH---HCcCccCCCChhhEEEeccccCCCCCceEEEEEC
Confidence            99999986 89988752     344567789999999999999   569999999999999985     23455667777


Q ss_pred             ccc
Q 002105          828 GLA  830 (966)
Q Consensus       828 ~~~  830 (966)
                      +.+
T Consensus       190 ~r~  192 (268)
T PRK15123        190 HRA  192 (268)
T ss_pred             Ccc
Confidence            755

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.15  E-value=1.8e-05  Score=76.37  Aligned_cols=133  Identities=13%  Similarity=0.153  Sum_probs=86.5

Q ss_pred             CCCccEEEEEEEecCCcEEEEEEEeccC--------cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          693 KKGVSSSYKVRSLANDMQFVVKKIIDVN--------TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       693 ~~g~~~vy~~~~~~~~~~vavk~~~~~~--------~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      +|.-+.|+++..  .|+..+||.-....        ....+.-.+|.+.+.|. +--.|..-.=++.+...-.|+|||++
T Consensus        17 QGAEArv~~~~~--~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~-~~~GI~~P~l~~~D~~~~~i~ME~~~   93 (229)
T KOG3087|consen   17 QGAEARVPRGSF--SGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKC-RALGIPAPRLIFIDTYGGQIYMEFID   93 (229)
T ss_pred             ccceeeEeeecc--CCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHH-HHhCCCCceEEEEecCCCeEEEEecc
Confidence            444556888774  77777777543221        11233456777777773 32222222223444455579999998


Q ss_pred             C-CCHHHHHHc----CCHHHH-HHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCce-EEEeccccce
Q 002105          765 G-KELSEVLRN----LSWERR-RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPH-LRLSVPGLAY  831 (966)
Q Consensus       765 ~-g~L~~~l~~----l~~~~~-~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~-~~~~~~~~~~  831 (966)
                      | -++.+++..    -..++. ...+..|-+.+.-||   ...|||+|+..+||++..+.... +-+.|||++.
T Consensus        94 g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH---~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~  164 (229)
T KOG3087|consen   94 GASTVKDFILSTMEDESEDEGLAELARRIGELIGKLH---DNDIIHGDLTTSNILLRSDGNQITPILIDFGLSS  164 (229)
T ss_pred             chhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhh---hCCeecccccccceEEecCCCcCceEEEeecchh
Confidence            6 367787752    222333 678899999999999   66999999999999997665543 2477888864

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.14  E-value=5.1e-08  Score=110.34  Aligned_cols=127  Identities=28%  Similarity=0.267  Sum_probs=73.7

Q ss_pred             cceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEcc
Q 002105          205 NLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLS  284 (966)
Q Consensus       205 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  284 (966)
                      .|.+.+.++|.+. .+..++.-++.|+.|+|++|+++..  ..+..+++|++|||++|++....--...++. |+.|.++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            3555666666665 3445556666677777777776633  2556667777777777776532222233333 6777777


Q ss_pred             CCcCcccCchhhcCCCCCceecccCCCCCCCC-CCCCCCCCCccEEEccCCcCc
Q 002105          285 DNYLSGEIPEEVIQLQNLEILHLFSNNFTGKI-PSSLASMPKLQVLQLWSNQFS  337 (966)
Q Consensus       285 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~  337 (966)
                      +|.++..  ..+.++.+|+.||+++|-+.+.- -..+..+..|+.|.|.+|.+.
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7766532  34556666777777777665421 112344556666777776653

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.12  E-value=7.4e-05  Score=80.71  Aligned_cols=178  Identities=22%  Similarity=0.332  Sum_probs=112.3

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeE--------EeeEEecCCeeEEEEE
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVR--------LHGVCRSEKAAYLVYE  761 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~--------l~g~~~~~~~~~lv~E  761 (966)
                      ..|+||.+.+|-.....+  . ++|..........   -+.++.+.+--.||-+-.        ++|-- ....+-+.|.
T Consensus        18 ~LgqGgea~ly~l~e~~d--~-VAKIYh~Pppa~~---aqk~a~la~~p~~p~~~~rvaWPqa~L~G~~-~~~~iGflmP   90 (637)
T COG4248          18 PLGQGGEADLYTLGEVRD--Q-VAKIYHAPPPAAQ---AQKVAELAATPDAPLLNYRVAWPQATLHGGR-RGKVIGFLMP   90 (637)
T ss_pred             cccCCccceeeecchhhc--h-hheeecCCCchHH---HHHHHHhccCCCCcchhhhhcccHHHhhCCC-ccceeEEecc
Confidence            358888888987654222  2 3454433322222   233444444445664433        12211 1223567788


Q ss_pred             ccCCCC-HHHHHH---------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccc-c
Q 002105          762 YIEGKE-LSEVLR---------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL-A  830 (966)
Q Consensus       762 y~~~g~-L~~~l~---------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~-~  830 (966)
                      .+++.. ...+..         ..+|+-.++++..+|.+.+-||++   |-+-+|+.++|+|+.++..  +.+.|.+. .
T Consensus        91 ~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~---Gh~vGDVn~~~~lVsd~~~--V~LVdsDsfq  165 (637)
T COG4248          91 KVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEH---GHVVGDVNQNSFLVSDDSK--VVLVDSDSFQ  165 (637)
T ss_pred             cCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhc---CCcccccCccceeeecCce--EEEEccccee
Confidence            777652 222221         268999999999999999999955   7788999999999986544  44333221 1


Q ss_pred             eecC----CCCcCCcccccccccC-----CCCCCCcchHHHHHHHHHHHHcC-CCCCCC
Q 002105          831 YCTD----SKSINSSAYVAPETKE-----SKDITEKGDIYGFGLILIDLLTG-KSPADA  879 (966)
Q Consensus       831 ~~~~----~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~S~Gv~l~el~tg-~~p~~~  879 (966)
                      .+..    ...+|.+.|.+||.-.     +-.-+...|-|.+||+++|++-| +.||.+
T Consensus       166 i~~ng~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysG  224 (637)
T COG4248         166 INANGTLHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSG  224 (637)
T ss_pred             eccCCceEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCc
Confidence            1111    1236788999999643     44456789999999999999876 999875

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.12  E-value=1.4e-07  Score=106.94  Aligned_cols=106  Identities=32%  Similarity=0.370  Sum_probs=59.8

Q ss_pred             ccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeC
Q 002105          467 DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDL  546 (966)
Q Consensus       467 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdL  546 (966)
                      +.|+.|||++|+++..-  .+..+..|++|||++|.+....--...+++ |+.|+|++|.++...  .+.+|.+|+.|||
T Consensus       187 ~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~--gie~LksL~~LDl  261 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR--GIENLKSLYGLDL  261 (1096)
T ss_pred             HHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh--hHHhhhhhhccch
Confidence            45666666666665332  455666666666666666533222233444 666666666665332  2456666666777


Q ss_pred             CCCcCcccCC-cccccCCCCCeeeCcCCcccc
Q 002105          547 SENQLSGKIP-QTLGRVASLVQVNISHNHFHG  577 (966)
Q Consensus       547 s~N~l~g~~p-~~l~~l~~L~~l~ls~N~l~g  577 (966)
                      |+|-|.+.-. ..+..+.+|..|+|.+|++.+
T Consensus       262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            7776654321 123345556666677776654

>PRK09902 hypothetical protein; Provisional

Probab=98.03  E-value=0.00011  Score=74.15  Aligned_cols=133  Identities=17%  Similarity=0.140  Sum_probs=94.7

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccC------cccccchHHHHHHHHhhcC-CCceeEEeeEEe---cC--CeeEE
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVN------TITTSSFWPDVSQFGKLIM-HPNIVRLHGVCR---SE--KAAYL  758 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~------~~~~~~~~~e~~~~~~~~~-H~niv~l~g~~~---~~--~~~~l  758 (966)
                      .|+||-+.||+...  .|..+-+|+-...-      ......|.+|...+.++-. .-.+.+.. ++.   .+  -..+|
T Consensus        26 ~~rgG~SgV~r~~~--~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv-f~~~~k~~~~~rA~L  102 (216)
T PRK09902         26 YRRNGMSGVQCVER--NGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV-FGEAVKIEGEWRALL  102 (216)
T ss_pred             cCCCCcceEEEEEe--CCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc-eeeeeccCCceEEEE
Confidence            46789999999765  45578889875221      3356679999988887522 12233333 332   11  24689


Q ss_pred             EEEccCC-CCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccc
Q 002105          759 VYEYIEG-KELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL  829 (966)
Q Consensus       759 v~Ey~~~-g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~  829 (966)
                      |+|-++| -+|.+++..     .+...+..+..+||+.++-||   ..++.|+|+-+.||+++.++...+++.|+--
T Consensus       103 VTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH---~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk  176 (216)
T PRK09902        103 VTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMH---SVNRQHGCCYVRHIYVKTEGKAEAGFLDLEK  176 (216)
T ss_pred             EEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHhheeecCCCCeeEEEEEhhc
Confidence            9997764 689998854     355677899999999999999   5699999999999999865555567776543

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.99  E-value=5.9e-05  Score=77.79  Aligned_cols=123  Identities=18%  Similarity=0.252  Sum_probs=84.0

Q ss_pred             cCCcEEEEEEEeccC-------cccccchHHHHHHHHhhcC-CCceeEEeeEEecC----CeeEEEEEccCC-CCHHHHH
Q 002105          706 ANDMQFVVKKIIDVN-------TITTSSFWPDVSQFGKLIM-HPNIVRLHGVCRSE----KAAYLVYEYIEG-KELSEVL  772 (966)
Q Consensus       706 ~~~~~vavk~~~~~~-------~~~~~~~~~e~~~~~~~~~-H~niv~l~g~~~~~----~~~~lv~Ey~~~-g~L~~~l  772 (966)
                      ..++.+.+|.....-       ........+|...+.++.+ .=.+.+.+++....    ...++|+|++++ -+|.+++
T Consensus        30 ~~~~~y~~k~~~~~~~~~~~~~~~~~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~  109 (206)
T PF06293_consen   30 LVGRRYYRKRLWNKLRRDRLRFPLRRSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLL  109 (206)
T ss_pred             ccceEEEECCeechhccchhhhcccchHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHH
Confidence            445566666553221       1234456777766655321 22344445555432    245899999998 4899998


Q ss_pred             Hc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC-CceEEEeccccce
Q 002105          773 RN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAY  831 (966)
Q Consensus       773 ~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~-~~~~~~~~~~~~~  831 (966)
                      ..   .+...+..++.++++.++-||   ..+|+|+|+++.|||++.+. ...+.+.|++-+.
T Consensus       110 ~~~~~~~~~~~~~ll~~l~~~i~~lH---~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~  169 (206)
T PF06293_consen  110 QQWEQLDPSQRRELLRALARLIAKLH---DAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMR  169 (206)
T ss_pred             HhhcccchhhHHHHHHHHHHHHHHHH---HCcCCCCCCCcccEEEeCCCCceeEEEEcchhce
Confidence            75   566778899999999999999   56999999999999998764 4456677776543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=1.6e-06  Score=88.96  Aligned_cols=84  Identities=26%  Similarity=0.326  Sum_probs=39.1

Q ss_pred             hcCCCCcEEECCCCCCCC--CCC--CCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCccc-CCcCCCCCCC
Q 002105          107 SSSNSLRFLNLSNNNFTG--PVP--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGE-IPLSISNITS  181 (966)
Q Consensus       107 ~~l~~L~~L~Ls~N~l~~--~~~--~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~  181 (966)
                      ...+.++.|||.+|.|+.  .+.  ..+++.|++|+||.|.+...|-..-..+.+|++|-|.+..+.-. ....+..++.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            344555666666665553  111  14555666666666665533222113445566666655544321 1122334444


Q ss_pred             CCEEEccCC
Q 002105          182 LQIFTLASN  190 (966)
Q Consensus       182 L~~L~L~~n  190 (966)
                      ++.|+++.|
T Consensus       148 vtelHmS~N  156 (418)
T KOG2982|consen  148 VTELHMSDN  156 (418)
T ss_pred             hhhhhhccc
Confidence            444444444

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=97.94  E-value=3.6e-06  Score=96.55  Aligned_cols=157  Identities=22%  Similarity=0.347  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCC-----C----------cCCccccccccc
Q 002105          785 IGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK-----S----------INSSAYVAPETK  849 (966)
Q Consensus       785 ~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~-----~----------~~~~~y~aPE~~  849 (966)
                      .+++.|+.|+|.  ++++||+.|.|++|.++....  .|++.|++.......     .          .-...|.|||++
T Consensus       106 ~~v~dgl~flh~--sAk~VH~ni~p~~i~~na~~~--wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~  181 (700)
T KOG2137|consen  106 GNVADGLAFLHR--SAKVVHGNIQPEAIVVNANGD--WKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYL  181 (700)
T ss_pred             hcccchhhhhcc--CcceeecccchhheeeccCcc--eeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhh
Confidence            345699999996  568999999999999997654  455555554322110     0          112359999999


Q ss_pred             CCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHH
Q 002105          850 ESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALH  928 (966)
Q Consensus       850 ~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~  928 (966)
                      .+...+.++|+||+||.+|-+.. |+.-+.+. +. .......+..         .+-...+.......|+.+-+   .+
T Consensus       182 ~~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~-~~-~~~~~~~~~~---------~~~~~~~~s~~~p~el~~~l---~k  247 (700)
T KOG2137|consen  182 LGTTNTPASDVFSLGVLIYTIYNGGKSIIAAN-GG-LLSYSFSRNL---------LNAGAFGYSNNLPSELRESL---KK  247 (700)
T ss_pred             ccccccccccceeeeeEEEEEecCCcchhhcc-CC-cchhhhhhcc---------cccccccccccCcHHHHHHH---HH
Confidence            99888999999999999999984 54444332 11 1111111110         01111111112233433333   34


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhhccCCcCCCCcc
Q 002105          929 CTAGDPTARPCASDVTKTLESCFRISSCVSGLKF  962 (966)
Q Consensus       929 C~~~~P~~RPt~~~v~~~L~~~~~~~~~~~~~~~  962 (966)
                      -+..++..||++.++..   ..+..+++..+++|
T Consensus       248 ~l~~~~~~rp~~~~l~~---~~ff~D~~~~aLrf  278 (700)
T KOG2137|consen  248 LLNGDSAVRPTLDLLLS---IPFFSDPGLKALRF  278 (700)
T ss_pred             HhcCCcccCcchhhhhc---ccccCCchhhhhhh
Confidence            46789999997765543   23555566666655

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.93  E-value=3.6e-07  Score=83.08  Aligned_cols=58  Identities=33%  Similarity=0.450  Sum_probs=26.2

Q ss_pred             CCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCCcC
Q 002105          492 ELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQL  551 (966)
Q Consensus       492 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l  551 (966)
                      .++.|+|++|.++ .+|.++..++.|+.||++.|.|. ..|..+..|.++..||..+|.+
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence            3444444444443 34444444444444444444444 2333333344444444444444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.93  E-value=1.7e-06  Score=88.65  Aligned_cols=195  Identities=22%  Similarity=0.309  Sum_probs=91.4

Q ss_pred             CCCCCcEEeCCCCCCCC--cCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcce
Q 002105          130 SLSRLEILDLSNNMLSG--KIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLK  207 (966)
Q Consensus       130 ~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  207 (966)
                      ..+.++.|||..|.|+.  .+-..+.+|+.|++|+|+.|.+...|...=..+.+|++|-|.+..+.-.            
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~------------  136 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWT------------  136 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChh------------
Confidence            44567777777777653  1222344566666666666665533321112334444444444433211            


Q ss_pred             EEEccCCCCCCCCCcCccCCCCCCEEEeeccccc----------ccCCc--CCCCCCccceEeccccccCCCCChhhhcC
Q 002105          208 WIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLT----------GQIPP--SFGNLSNLRYLFLYQNKLTGSIPKSILGL  275 (966)
Q Consensus       208 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~----------~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  275 (966)
                                 .....+.+++.++.|++|.|++.          ..-|.  .+..++.+..+.++-|++...       .
T Consensus       137 -----------~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~-------F  198 (418)
T KOG2982|consen  137 -----------QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI-------F  198 (418)
T ss_pred             -----------hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh-------c
Confidence                       11122344445555555554322          11000  011122233333333443322       2


Q ss_pred             CCCCEEEccCCcCccc-CchhhcCCCCCceecccCCCCCCC-CCCCCCCCCCccEEEccCCcCcccCCc------cccCC
Q 002105          276 KSLVSFDLSDNYLSGE-IPEEVIQLQNLEILHLFSNNFTGK-IPSSLASMPKLQVLQLWSNQFSGEIPS------NLGKQ  347 (966)
Q Consensus       276 ~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~------~~~~~  347 (966)
                      +++..+.+..|.+... -...+..++.+..|+|+.|++..- --+.+.++++|..|.+++|.+...+..      .++++
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL  278 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL  278 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence            4555555666655432 123344455666777777776421 123456677777777777776543322      23445


Q ss_pred             CCCcEEE
Q 002105          348 NNLTVID  354 (966)
Q Consensus       348 ~~L~~L~  354 (966)
                      +++++|+
T Consensus       279 ~~v~vLN  285 (418)
T KOG2982|consen  279 TKVQVLN  285 (418)
T ss_pred             cceEEec
Confidence            5555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.93  E-value=8e-07  Score=80.90  Aligned_cols=114  Identities=21%  Similarity=0.264  Sum_probs=76.8

Q ss_pred             CCCcEecCCCCcCCccCCCC-cCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhcccccccccccc
Q 002105          444 TSLQMLNLAGNNFSGKLPDS-FGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDL  522 (966)
Q Consensus       444 ~~L~~L~Ls~N~l~~~~p~~-~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  522 (966)
                      ..|...+|++|.|....+.+ ...+.++.|+|++|.++ .+|.++..++.|+.|+++.|.+. ..|..+..+.+|..||.
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            34455566666666433332 23346778888888887 67888999999999999999987 56667777999999999


Q ss_pred             CCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccc
Q 002105          523 SNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLG  560 (966)
Q Consensus       523 s~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~  560 (966)
                      .+|.+. .||..+-.-++....++.++.+.+.-|..+.
T Consensus       131 ~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq  167 (177)
T KOG4579|consen  131 PENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ  167 (177)
T ss_pred             CCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence            999886 5554433223333445566666665554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	966
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-58
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-24
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-58
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-24
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		4e-25
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		3e-24
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		9e-23
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-19
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-19
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		8e-15
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		4e-14
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		7e-11
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		1e-10
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		3e-10
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		3e-10
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		3e-10
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		3e-10
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		1e-09
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		2e-09
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		3e-09
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		3e-09
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		1e-04
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		3e-09
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		4e-09
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		6e-09
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		6e-09
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		6e-09
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		7e-04
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		7e-09
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		7e-04
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		7e-09
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		8e-09
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		6e-08
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		1e-08
2qr8_A	342	2.0a X-ray Structure Of C-terminal Kinase Domain Of		1e-08
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		2e-08
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		2e-08
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		2e-08
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		2e-08
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		3e-08
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		3e-08
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		3e-08
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		3e-08
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		3e-08
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		3e-08
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		5e-08
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		6e-08
3zh8_A	349	A Novel Small Molecule Apkc Inhibitor Length = 349		7e-08
1zrz_A	364	Crystal Structure Of The Catalytic Domain Of Atypic		8e-08
4dc2_A	396	Structure Of Pkc In Complex With A Substrate Peptid		8e-08
3a8w_A	345	Crystal Structure Of Pkciota Kinase Domain Length =		9e-08
3g51_A	325	Structural Diversity Of The Active Conformation Of		1e-07
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		1e-07
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		1e-07
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		1e-07
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		1e-07
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		2e-07
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		2e-07
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		2e-07
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-07
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		2e-07
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		2e-07
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		2e-07
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-07
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		2e-07
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		3e-07
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		3e-07
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		4e-07
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		4e-07
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		4e-07
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		4e-07
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		4e-07
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		4e-07
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		4e-07
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		4e-07
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		4e-07
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		4e-07
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		4e-07
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		5e-07
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		5e-07
2qr7_A	342	2.0a X-Ray Structure Of C-Terminal Kinase Domain Of		5e-07
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		5e-07
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		6e-07
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		6e-07
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		6e-07
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		6e-07
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		7e-07
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		7e-07
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		7e-07
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		7e-07
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		8e-07
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		8e-07
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		8e-07
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		8e-07
3kk9_A	282	Camkii Substrate Complex B Length = 282		8e-07
3kk8_A	284	Camkii Substrate Complex A Length = 284		8e-07
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		8e-07
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		8e-07
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		9e-07
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		1e-06
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		1e-06
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		1e-06
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		1e-06
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		1e-06
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		1e-06
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		1e-06
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		1e-06
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		1e-06
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		1e-06
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		1e-06
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		2e-06
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		2e-06
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		2e-06
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		2e-06
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		2e-06
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		2e-06
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-06
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		2e-05
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		3e-06
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		3e-06
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		3e-06
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		3e-06
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		3e-06
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		3e-06
2ya9_A	361	Crystal Structure Of The Autoinhibited Form Of Mous		4e-06
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		4e-06
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		4e-06
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		5e-06
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		5e-06
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		5e-06
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		5e-06
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		5e-06
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		5e-06
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		5e-06
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		5e-06
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		5e-06
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		5e-06
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		5e-06
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		5e-06
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		5e-06
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		5e-06
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		5e-06
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		5e-06
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		5e-06
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		5e-06
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		5e-06
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		5e-06
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		5e-06
1p4f_A	293	Death Associated Protein Kinase Catalytic Domain Wi		5e-06
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		5e-06
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		5e-06
3gu4_A	295	Crystal Structure Of Dapkq23v-Amppnp Length = 295		5e-06
2w4j_A	277	X-Ray Structure Of A Dap-Kinase 2-277 Length = 277		5e-06
3f5u_A	295	Crystal Structure Of The Death Associated Protein K		5e-06
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		5e-06
1ig1_A	294	1.8a X-Ray Structure Of Ternary Complex Of A Cataly		5e-06
2yak_A	285	Structure Of Death-Associated Protein Kinase 1 (Dap		6e-06
2y0a_A	326	Structure Of Dapk1 Construct Residues 1-304 Length		6e-06
3dfc_B	295	Crystal Structure Of A Glycine-Rich Loop Mutant Of		6e-06
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		6e-06
1wvw_A	278	Crystal Structures Of Kinase Domain Of Dap Kinase I		6e-06
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		6e-06
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		7e-06
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		8e-06
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		8e-06
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		8e-06
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-04
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		8e-06
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		8e-06
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		8e-06
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		9e-06
2w4k_A	302	X-Ray Structure Of A Dap-Kinase 2-302 Length = 302		9e-06
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		9e-06
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		9e-05
3gu8_A	295	Crystal Structure Of Dapkl93g With N6-Cyclopentylad		1e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		1e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		7e-05
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-05
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		5e-05
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		1e-05
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		7e-05
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		1e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		7e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-04
2vz6_A	313	Structure Of Human Calcium Calmodulin Dependent Pro		1e-05
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-05
1yrp_A	278	Catalytic Domain Of Human Zip Kinase Phosphorylated		2e-05
2j90_A	304	Crystal Structure Of Human Zip Kinase In Complex Wi		2e-05
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		2e-05
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		2e-05
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		2e-05
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		2e-05
3bhy_A	283	Crystal Structure Of Human Death Associated Protein		2e-05
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-05
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		2e-05
3tac_A	361	Crystal Structure Of The Liprin-AlphaCASK COMPLEX L		2e-05
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-05
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		2e-05
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		2e-05
2vn9_A	301	Crystal Structure Of Human Calcium Calmodulin Depen		2e-05
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		3e-05
2v7o_A	336	Crystal Structure Of Human Calcium-Calmodulin-Depen		3e-05
3kn5_A	325	Crystal Structure Of The C-Terminal Kinase Domain O		3e-05
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		3e-05
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		3e-05
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		3e-05
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		3e-05
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		3e-05
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		3e-05
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		3e-05
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		3e-05
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		3e-05
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		3e-05
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		3e-05
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		3e-05
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		3e-05
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		3e-05
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		3e-05
3kmw_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		3e-05
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		3e-05
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		4e-05
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		4e-05
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		4e-05
2a2a_A	321	High-resolution Crystallographic Analysis Of The Au		4e-05
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		4e-05
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		2e-04
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		4e-05
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		4e-05
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		4e-05
1wmk_A	321	Human Death-Associated Kinase Drp-1, Mutant S308d D		4e-05
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		4e-05
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		4e-05
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		4e-05
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		5e-05
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		5e-05
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		5e-05
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		5e-05
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		5e-05
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		5e-05
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		5e-05
3c0g_A	351	Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Len		5e-05
1z9x_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		5e-05
2a27_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		5e-05
1zws_A	288	Crystal Structure Of The Catalytic Domain Of Human		5e-05
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		5e-05
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		2e-04
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		5e-05
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		6e-05
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		6e-05
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		6e-05
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		6e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		6e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		8e-05
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		7e-05
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		7e-05
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		7e-05
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		7e-05
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		7e-05
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		7e-05
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		7e-05
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		7e-05
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		7e-05
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		7e-05
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		7e-05
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		7e-05
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		7e-05
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		7e-05
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		7e-05
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		7e-05
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		7e-05
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		7e-05
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		7e-05
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		7e-05
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		7e-05
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		7e-05
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		7e-05
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		8e-05
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		8e-05
4ae6_A	343	Structure And Function Of The Human Sperm-specific		8e-05
2wel_A	327	Crystal Structure Of Su6656-Bound CalciumCALMODULIN		8e-05
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		8e-05
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		9e-05
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		2e-04
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		9e-05
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		9e-05
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		9e-05
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		9e-05
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		9e-05
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		9e-05
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		9e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		9e-05
3soa_A	444	Full-Length Human Camkii Length = 444		9e-05
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		1e-04
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		1e-04
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		1e-04
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		1e-04
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		1e-04
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		1e-04
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		1e-04
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		1e-04
3udb_A	317	Crystal Structure Of Snrk2.6 Length = 317		1e-04
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		1e-04
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		1e-04
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		1e-04
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		1e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		1e-04
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		1e-04
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		1e-04
3bhh_A	295	Crystal Structure Of Human Calcium/calmodulin-depen		1e-04
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		1e-04
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		1e-04
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		1e-04
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		1e-04
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		1e-04
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		1e-04
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		1e-04
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		1e-04
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		1e-04
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		1e-04
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		1e-04
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		1e-04
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		1e-04
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		1e-04
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		1e-04
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		1e-04
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		1e-04
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		2e-04
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		2e-04
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		2e-04
1tki_A	321	Autoinhibited Serine Kinase Domain Of The Giant Mus		2e-04
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		2e-04
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		2e-04
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-04
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		2e-04
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		2e-04
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		2e-04
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		2e-04
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		2e-04
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		2e-04
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		2e-04
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		2e-04
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		2e-04
4ae9_A	343	Structure And Function Of The Human Sperm-specific		2e-04
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		2e-04
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		2e-04
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		2e-04
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		2e-04
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		2e-04
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		2e-04
2f2u_A	402	Crystal Structure Of The Rho-Kinase Kinase Domain L		3e-04
4fvp_A	289	Crystal Structure Of The Jak2 Pseudokinase Domain (		3e-04
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		3e-04
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		3e-04
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		3e-04
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		3e-04
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		3e-04
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		3e-04
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		3e-04
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		3e-04
3zuu_A	362	The Structure Of Ost1 (D160a, S175d) Kinase In Comp		3e-04
2clq_A	295	Structure Of Mitogen-Activated Protein Kinase Kinas		3e-04
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		3e-04
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		3e-04
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		3e-04
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		3e-04
3zut_A	362	The Structure Of Ost1 (D160a) Kinase Length = 362		3e-04
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		3e-04
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		3e-04
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		3e-04
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		3e-04
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		4e-04
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		4e-04
4fvr_A	289	Crystal Structure Of The Jak2 Pseudokinase Domain M		4e-04
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		4e-04
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		4e-04
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		4e-04
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		5e-04
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		5e-04
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		5e-04
3qam_E	350	Crystal Structure Of Glu208ala Mutant Of Catalytic		5e-04
2i0e_A	353	Structure Of Catalytic Domain Of Human Protein Kina		6e-04
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		6e-04
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		6e-04
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		6e-04
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		6e-04
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		6e-04
3ujg_A	361	Crystal Structure Of Snrk2.6 In Complex With Hab1 L		6e-04
3qd2_B	332	Crsytal Structure Of Mouse Perk Kinase Domain Lengt		6e-04
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		7e-04
3uc4_A	362	The Crystal Structure Of Snf1-Related Kinase 2.6 Le		7e-04
3uc3_A	361	The Crystal Structure Of Snf1-Related Kinase 2.3 Le		7e-04
3vn9_A	340	Rifined Crystal Structure Of Non-Phosphorylated Map		8e-04
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		9e-04
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		9e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  224 bits (572), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 182/555 (32%), Positives = 269/555 (48%), Gaps = 80/555 (14%)
Query: 123 TGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSL 182
           +G V +     LE LD+S+N  S  IP  +G  S L+ LD+ GN L G+   +IS  T L
Sbjct: 188 SGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTEL 246
Query: 183 QIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLT 241
           ++  ++SNQ +G IP     L++L+++ L  N  +GEIP  + G   +L  LDL  N+  
Sbjct: 247 KLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 304
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIP-KSILGLKSLVSFDLSDNYLSGEIPEEVIQL- 299
           G +PP FG+ S L  L L  N  +G +P  ++L ++ L   DLS N  SGE+PE +  L 
Sbjct: 305 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Query: 300 ----------------------QN----LEILHLFSNNFTGKIPSSLASMPKLQVLQLWS 333
                                 QN    L+ L+L +N FTGKIP +L++  +L  L L  
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 334 NQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLS 393
           N  SG IPS+LG  + L  + L  N L G+IP+ L    +L  LIL  N L G+IP+ LS
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 394 TCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAG 453
            C +L  + L NNRL+GE+     RL  +  L +S N  SG I  +  +  SL  L+L  
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 544
Query: 454 NNFSGKLPDSF-----------------------------------------GSDQLENL 472
           N F+G +P +                                           S+QL  L
Sbjct: 545 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 604
Query: 473 ------DLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQ 526
                 +++   + G    +F     +M L +S N L G IP+E+ S   L  L+L +N 
Sbjct: 605 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 664
Query: 527 LSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFL 586
           +SG IP  + ++  L  LDLS N+L G+IPQ +  +  L ++++S+N+  G +P  G F 
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 724
Query: 587 AINATAVAGN-DLCG 600
                    N  LCG
Sbjct: 725 TFPPAKFLNNPGLCG 739

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 134/398 (33%), Positives = 187/398 (46%), Gaps = 23/398 (5%)
Query: 228 TSLNHLDLVYNNLTGQIPP--SFGNLSNLRYLFLYQNKLTGSIPKSILG---LKSLVSFD 282
            SL  LDL  N+L+G +    S G+ S L++L +  N L    P  + G   L SL   D
Sbjct: 97  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLD 154
Query: 283 LSDNYLSG-EIPEEVIQLQNLEILHLF--SNNFTGKIPSSLASMPKLQVLQLWSNQFSGE 339
           LS N +SG  +   V+     E+ HL    N  +G +   ++    L+ L + SN FS  
Sbjct: 155 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTG 212
Query: 340 IPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLR 399
           IP  LG  + L  +D+S N L+G     +     L  L + SN   G IP      KSL+
Sbjct: 213 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 269
Query: 400 RVRLQNNRLSGELSSEFT-RLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSG 458
            + L  N+ +GE+    +     +  LD+SGN   G +       + L+ L L+ NNFSG
Sbjct: 270 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 329
Query: 459 KLPDS--FGSDQLENLDLSENRFSGTIPRSFGRLS-ELMQLKISRNKLFGDIPEELSSCK 515
           +LP         L+ LDLS N FSG +P S   LS  L+ L +S N   G I   L    
Sbjct: 330 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 389
Query: 516 K--LVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHN 573
           K  L  L L NN  +G IP +LS    L  L LS N LSG IP +LG ++ L  + +  N
Sbjct: 390 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 449
Query: 574 HFHGSLPSTGAFLAINATAVAG-NDLCGGDSTSGLPPC 610
              G +P    ++    T +   NDL  G+  SGL  C
Sbjct: 450 MLEGEIPQELMYVKTLETLILDFNDLT-GEIPSGLSNC 486

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  224 bits (572), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 182/555 (32%), Positives = 269/555 (48%), Gaps = 80/555 (14%)
Query: 123 TGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSL 182
           +G V +     LE LD+S+N  S  IP  +G  S L+ LD+ GN L G+   +IS  T L
Sbjct: 191 SGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTEL 249
Query: 183 QIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLT 241
           ++  ++SNQ +G IP     L++L+++ L  N  +GEIP  + G   +L  LDL  N+  
Sbjct: 250 KLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307
Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIP-KSILGLKSLVSFDLSDNYLSGEIPEEVIQL- 299
           G +PP FG+ S L  L L  N  +G +P  ++L ++ L   DLS N  SGE+PE +  L 
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Query: 300 ----------------------QN----LEILHLFSNNFTGKIPSSLASMPKLQVLQLWS 333
                                 QN    L+ L+L +N FTGKIP +L++  +L  L L  
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 334 NQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLS 393
           N  SG IPS+LG  + L  + L  N L G+IP+ L    +L  LIL  N L G+IP+ LS
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 394 TCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAG 453
            C +L  + L NNRL+GE+     RL  +  L +S N  SG I  +  +  SL  L+L  
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547
Query: 454 NNFSGKLPDSF-----------------------------------------GSDQLENL 472
           N F+G +P +                                           S+QL  L
Sbjct: 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607
Query: 473 ------DLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQ 526
                 +++   + G    +F     +M L +S N L G IP+E+ S   L  L+L +N 
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667
Query: 527 LSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFL 586
           +SG IP  + ++  L  LDLS N+L G+IPQ +  +  L ++++S+N+  G +P  G F 
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727
Query: 587 AINATAVAGN-DLCG 600
                    N  LCG
Sbjct: 728 TFPPAKFLNNPGLCG 742

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 135/398 (33%), Positives = 190/398 (47%), Gaps = 23/398 (5%)
Query: 228 TSLNHLDLVYNNLTGQIPP--SFGNLSNLRYLFLYQNKLTGSIPKSILG---LKSLVSFD 282
            SL  LDL  N+L+G +    S G+ S L++L +  N L    P  + G   L SL   D
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLD 157
Query: 283 LSDNYLSG-EIPEEVIQLQNLEILHLF--SNNFTGKIPSSLASMPKLQVLQLWSNQFSGE 339
           LS N +SG  +   V+     E+ HL    N  +G +   ++    L+ L + SN FS  
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTG 215
Query: 340 IPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLR 399
           IP  LG  + L  +D+S N L+G     +     L  L + SN   G IP      KSL+
Sbjct: 216 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 272
Query: 400 RVRLQNNRLSGELSSEFT-RLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSG 458
            + L  N+ +GE+    +     +  LD+SGN   G +       + L+ L L+ NNFSG
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332
Query: 459 KLP-DSFGSDQ-LENLDLSENRFSGTIPRSFGRLS-ELMQLKISRNKLFGDIPEELSSCK 515
           +LP D+    + L+ LDLS N FSG +P S   LS  L+ L +S N   G I   L    
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392
Query: 516 K--LVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHN 573
           K  L  L L NN  +G IP +LS    L  L LS N LSG IP +LG ++ L  + +  N
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452
Query: 574 HFHGSLPSTGAFLAINATAVAG-NDLCGGDSTSGLPPC 610
              G +P    ++    T +   NDL  G+  SGL  C
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLT-GEIPSGLSNC 489

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score =  113 bits (283), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 143/295 (48%), Gaps = 23/295 (7%)
Query: 672 KSLTIDEI-ISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPD 730
           K  ++ E+ ++S    N    G+ G    YK R LA+     VK++ +  T      +  
Sbjct: 18  KRFSLRELQVASDNFXNKNILGRGGFGKVYKGR-LADGXLVAVKRLKEERTQGGELQFQT 76
Query: 731 VSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN-------LSWERRRKV 783
             +   + +H N++RL G C +     LVY Y+    ++  LR        L W +R+++
Sbjct: 77  EVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRI 136
Query: 784 AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS-- 841
           A+G A+ L +LH HC P ++  DV    +++D  +E    +   GLA   D K  +    
Sbjct: 137 ALGSARGLAYLHDHCDPKIIHRDVKAANILLD--EEFEAVVGDFGLAKLMDYKDXHVXXA 194
Query: 842 -----AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHES---IVEWARY 893
                 ++APE   +   +EK D++G+G++L++L+TG+   D     ++    +++W + 
Sbjct: 195 VRGXIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKG 254
Query: 894 CYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE 948
              +  L+  VD  ++G+      E+ +++ +AL CT   P  RP  S+V + LE
Sbjct: 255 LLKEKKLEALVDVDLQGNYKD--EEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 307

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 143/295 (48%), Gaps = 23/295 (7%)
Query: 672 KSLTIDEI-ISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPD 730
           K  ++ E+ ++S    N    G+ G    YK R LA+     VK++ +         +  
Sbjct: 26  KRFSLRELQVASDNFSNKNILGRGGFGKVYKGR-LADGTLVAVKRLKEERXQGGELQFQT 84
Query: 731 VSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN-------LSWERRRKV 783
             +   + +H N++RL G C +     LVY Y+    ++  LR        L W +R+++
Sbjct: 85  EVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRI 144
Query: 784 AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN---- 839
           A+G A+ L +LH HC P ++  DV    +++D  +E    +   GLA   D K  +    
Sbjct: 145 ALGSARGLAYLHDHCDPKIIHRDVKAANILLD--EEFEAVVGDFGLAKLMDYKDXHVXXA 202
Query: 840 ---SSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPAD-ADFGVHESIV--EWARY 893
              +  ++APE   +   +EK D++G+G++L++L+TG+   D A     + ++  +W + 
Sbjct: 203 VRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKG 262
Query: 894 CYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE 948
              +  L+  VD  ++G+      E+ +++ +AL CT   P  RP  S+V + LE
Sbjct: 263 LLKEKKLEALVDVDLQGNYKD--EEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 315

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score =  105 bits (263), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 120/232 (51%), Gaps = 8/232 (3%)
Query: 220 IPKEIGDLTSLNHLDLV-YNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSL 278
           IP  + +L  LN L +   NNL G IPP+   L+ L YL++    ++G+IP  +  +K+L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 279 VSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKL-QVLQLWSNQFS 337
           V+ D S N LSG +P  +  L NL  +    N  +G IP S  S  KL   + +  N+ +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 338 GEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKS 397
           G+IP       NL  +DLS N L G          +  K+ L  NSL   +   +   K+
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 398 LRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGE----QKWEMTS 445
           L  + L+NNR+ G L    T+L  ++ L++S N+L G I +    Q++++++
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 94.0 bits (232), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 114/243 (46%), Gaps = 25/243 (10%)
Query: 316 IPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLF 375
           IPSSLA++P L  L +             G  NNL           G IP  +     L 
Sbjct: 68  IPSSLANLPYLNFLYI-------------GGINNLV----------GPIPPAIAKLTQLH 104
Query: 376 KLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGR 435
            L +   ++ G IP+ LS  K+L  +    N LSG L    + LP +  +   GN +SG 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 436 IGEQKWEMTSL-QMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELM 494
           I +     + L   + ++ N  +GK+P +F +  L  +DLS N   G     FG      
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224
Query: 495 QLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGK 554
           ++ +++N L  D+  ++   K L  LDL NN++ G +P  L+++  L  L++S N L G+
Sbjct: 225 KIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 555 IPQ 557
           IPQ
Sbjct: 284 IPQ 286

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 93.6 bits (231), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 114/232 (49%), Gaps = 9/232 (3%)
Query: 382 NSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKW 441
           N+L G IP +++    L  + + +  +SG +    +++  +  LD S N LSG +     
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 442 EMTSLQMLNLAGNNFSGKLPDSFG--SDQLENLDLSENRFSGTIPRSFGRLSELMQLKIS 499
            + +L  +   GN  SG +PDS+G  S    ++ +S NR +G IP +F  L+ L  + +S
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205
Query: 500 RNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTL 559
           RN L GD      S K    + L+ N L+  +   +     L  LDL  N++ G +PQ L
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 560 GRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGND-LCGGDSTSGLPPC 610
            ++  L  +N+S N+  G +P  G     + +A A N  LCG    S LP C
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG----SPLPAC 312

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 79.7 bits (195), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 41/243 (16%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------NLSWERRRKVAIGIAKALR 792
           HP++V L G C       L+Y+Y+E   L   L        ++SWE+R ++ IG A+ L 
Sbjct: 94  HPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLH 153
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGK-----------------DEPHLRLSVPGLAYCTDS 835
           +LH   + +++  DV    +++D                   D+ HL   V G       
Sbjct: 154 YLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKG------- 203
Query: 836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHE-SIVEWARYC 894
               +  Y+ PE      +TEK D+Y FG++L ++L  +S           ++ EWA   
Sbjct: 204 ----TLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVES 259
Query: 895 YSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS 954
           +++  L+  VDP +   +      + +  + A+ C A     RP   DV   LE   R+ 
Sbjct: 260 HNNGQLEQIVDPNLADKIRP--ESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQ 317
Query: 955 SCV 957
             V
Sbjct: 318 ESV 320

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 102/243 (41%), Gaps = 41/243 (16%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR-------NLSWERRRKVAIGIAKALR 792
           HP++V L G C       L+Y+Y+E   L   L        ++SWE+R ++ IG A+ L 
Sbjct: 94  HPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLH 153
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEP-----------------HLRLSVPGLAYCTDS 835
           +LH   + +++  DV    +++D    P                 HL   V G       
Sbjct: 154 YLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKG------- 203
Query: 836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHE-SIVEWARYC 894
               +  Y+ PE      +TEK D+Y FG++L ++L  +S           ++ EWA   
Sbjct: 204 ----TLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVES 259
Query: 895 YSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS 954
           +++  L+  VDP +   +      + +  + A+ C A     RP   DV   LE   R+ 
Sbjct: 260 HNNGQLEQIVDPNLADKIRP--ESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQ 317
Query: 955 SCV 957
             V
Sbjct: 318 ESV 320

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 96/209 (45%), Gaps = 21/209 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           GK     + KV         V+K++I  +  T  +F  +V +  + + HPN+++  GV  
Sbjct: 19  GKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEV-KVMRCLEHPNVLKFIGVLY 77
Query: 752 SEKAAYLVYEYIEGKELSEVLRNLS----WERRRKVAIGIAKALRFLH-----------F 796
            +K    + EYI+G  L  +++++     W +R   A  IA  + +LH            
Sbjct: 78  KDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSH 137
Query: 797 HC----SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESK 852
           +C    + +VV  D    +++VD K +P    S+           + +  ++APE    +
Sbjct: 138 NCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGR 197
Query: 853 DITEKGDIYGFGLILIDLLTGKSPADADF 881
              EK D++ FG++L +++ G+  AD D+
Sbjct: 198 SYDEKVDVFSFGIVLCEII-GRVNADPDY 225

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 25/204 (12%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLI---MHPNIVRLHG 748
           G+ G    YK     N+    VKK+  +  ITT        Q  K++    H N+V L G
Sbjct: 40  GEGGFGVVYK--GYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 97
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSV 802
                    LVY Y+    L + L        LSW  R K+A G A  + FLH       
Sbjct: 98  FSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHH 154
Query: 803 VAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDI 854
           +  D+    +++D  +    ++S  GLA  ++        S+ + ++AY+APE     +I
Sbjct: 155 IHRDIKSANILLD--EAFTAKISDFGLARASEKFAQTVMXSRIVGTTAYMAPEALRG-EI 211
Query: 855 TEKGDIYGFGLILIDLLTGKSPAD 878
           T K DIY FG++L++++TG    D
Sbjct: 212 TPKSDIYSFGVVLLEIITGLPAVD 235

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 70/282 (24%), Positives = 123/282 (43%), Gaps = 46/282 (16%)
Query: 686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVR 745
           E +  RG  GV    K R  A D+   +K+I   +     +F  ++ Q  + + HPNIV+
Sbjct: 14  EEVVGRGAFGVVCKAKWR--AKDV--AIKQI--ESESERKAFIVELRQLSR-VNHPNIVK 66
Query: 746 LHGVCRSEKAAYLVYEYIEGKELSEVLRN------------LSWERRRKVAIGIAKALRF 793
           L+G C +     LV EY EG  L  VL              +SW       +  ++ + +
Sbjct: 67  LYGACLN--PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSW------CLQCSQGVAY 118
Query: 794 LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN---SSAYVAPETKE 850
           LH     +++  D+ P  +++       L++   G A    +   N   S+A++APE  E
Sbjct: 119 LHSMQPKALIHRDLKPPNLLLVAGGTV-LKICDFGTACDIQTHMTNNKGSAAWMAPEVFE 177
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG 910
             + +EK D++ +G+IL +++T + P D + G     + WA +  +   L          
Sbjct: 178 GSNYSEKCDVFSWGIILWEVITRRKPFD-EIGGPAFRIMWAVHNGTRPPL---------- 226
Query: 911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR 952
               I+N    I +L   C + DP+ RP   ++ K +    R
Sbjct: 227 ----IKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMR 264

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 70/282 (24%), Positives = 123/282 (43%), Gaps = 46/282 (16%)
Query: 686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVR 745
           E +  RG  GV    K R  A D+   +K+I   +     +F  ++ Q  + + HPNIV+
Sbjct: 13  EEVVGRGAFGVVCKAKWR--AKDV--AIKQI--ESESERKAFIVELRQLSR-VNHPNIVK 65
Query: 746 LHGVCRSEKAAYLVYEYIEGKELSEVLRN------------LSWERRRKVAIGIAKALRF 793
           L+G C +     LV EY EG  L  VL              +SW       +  ++ + +
Sbjct: 66  LYGACLN--PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSW------CLQCSQGVAY 117
Query: 794 LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN---SSAYVAPETKE 850
           LH     +++  D+ P  +++       L++   G A    +   N   S+A++APE  E
Sbjct: 118 LHSMQPKALIHRDLKPPNLLLVAGGTV-LKICDFGTACDIQTHMTNNKGSAAWMAPEVFE 176
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG 910
             + +EK D++ +G+IL +++T + P D + G     + WA +  +   L          
Sbjct: 177 GSNYSEKCDVFSWGIILWEVITRRKPFD-EIGGPAFRIMWAVHNGTRPPL---------- 225
Query: 911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR 952
               I+N    I +L   C + DP+ RP   ++ K +    R
Sbjct: 226 ----IKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMR 263

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 25/204 (12%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLI---MHPNIVRLHG 748
           G+ G    YK     N+    VKK+  +  ITT        Q  K++    H N+V L G
Sbjct: 40  GEGGFGVVYK--GYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 97
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSV 802
                    LVY Y+    L + L        LSW  R K+A G A  + FLH       
Sbjct: 98  FSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHH 154
Query: 803 VAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--------KSINSSAYVAPETKESKDI 854
           +  D+    +++D  +    ++S  GLA  ++         + + ++AY+APE     +I
Sbjct: 155 IHRDIKSANILLD--EAFTAKISDFGLARASEKFAQTVMXXRIVGTTAYMAPEALRG-EI 211
Query: 855 TEKGDIYGFGLILIDLLTGKSPAD 878
           T K DIY FG++L++++TG    D
Sbjct: 212 TPKSDIYSFGVVLLEIITGLPAVD 235

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 25/204 (12%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLI---MHPNIVRLHG 748
           G+ G    YK     N+    VKK+  +  ITT        Q  K++    H N+V L G
Sbjct: 34  GEGGFGVVYK--GYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 91
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSV 802
                    LVY Y+    L + L        LSW  R K+A G A  + FLH       
Sbjct: 92  FSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHH 148
Query: 803 VAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--------KSINSSAYVAPETKESKDI 854
           +  D+    +++D  +    ++S  GLA  ++         + + ++AY+APE     +I
Sbjct: 149 IHRDIKSANILLD--EAFTAKISDFGLARASEKFAQXVMXXRIVGTTAYMAPEALRG-EI 205
Query: 855 TEKGDIYGFGLILIDLLTGKSPAD 878
           T K DIY FG++L++++TG    D
Sbjct: 206 TPKSDIYSFGVVLLEIITGLPAVD 229

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 89/204 (43%), Gaps = 25/204 (12%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL---IMHPNIVRLHG 748
           G+ G    YK     N+    VKK+  +  ITT        Q  K+     H N+V L G
Sbjct: 31  GEGGFGVVYK--GYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVXAKCQHENLVELLG 88
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSV 802
                    LVY Y     L + L        LSW  R K+A G A  + FLH       
Sbjct: 89  FSSDGDDLCLVYVYXPNGSLLDRLSCLDGTPPLSWHXRCKIAQGAANGINFLH---ENHH 145
Query: 803 VAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDI 854
           +  D+    +++D  +    ++S  GLA  ++        S+ + ++AY APE     +I
Sbjct: 146 IHRDIKSANILLD--EAFTAKISDFGLARASEKFAQXVXXSRIVGTTAYXAPEALRG-EI 202
Query: 855 TEKGDIYGFGLILIDLLTGKSPAD 878
           T K DIY FG++L++++TG    D
Sbjct: 203 TPKSDIYSFGVVLLEIITGLPAVD 226

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 118/275 (42%), Gaps = 37/275 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM------HPNIVR 745
           GK G    +K R + +     +K +I  ++   +       +F + +       HPNIV+
Sbjct: 28  GKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVK 87
Query: 746 LHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPS 801
           L+G+  +     +V E++   +L   L +    + W  + ++ + IA  + ++  + +P 
Sbjct: 88  LYGLMHN--PPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQ-NQNPP 144
Query: 802 VVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA-------YVAPET--KESK 852
           +V  D+    + +   DE +  +      + T  +S++S +       ++APET   E +
Sbjct: 145 IVHRDLRSPNIFLQSLDE-NAPVCAKVADFGTSQQSVHSVSGLLGNFQWMAPETIGAEEE 203
Query: 853 DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV 912
             TEK D Y F +IL  +LTG+ P D           + +  + +   +  + P I    
Sbjct: 204 SYTEKADTYSFAMILYTILTGEGPFDE--------YSYGKIKFINMIREEGLRPTIPEDC 255
Query: 913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL 947
                 ++E+      C +GDP  RP  S + K L
Sbjct: 256 PPRLRNVIEL------CWSGDPKKRPHFSYIVKEL 284

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 118/279 (42%), Gaps = 45/279 (16%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM------HPNIVR 745
           GK G    +K R + +     +K +I  ++   +       +F + +       HPNIV+
Sbjct: 28  GKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVK 87
Query: 746 LHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPS 801
           L+G+  +     +V E++   +L   L +    + W  + ++ + IA  + ++  + +P 
Sbjct: 88  LYGLMHN--PPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQ-NQNPP 144
Query: 802 VVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----SKSINSSA-------YVAPET-- 848
           +V  D+    + +   DE     + P  A   D     +S++S +       ++APET  
Sbjct: 145 IVHRDLRSPNIFLQSLDE-----NAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIG 199
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI 908
            E +  TEK D Y F +IL  +LTG+ P D           + +  + +   +  + P I
Sbjct: 200 AEEESYTEKADTYSFAMILYTILTGEGPFDE--------YSYGKIKFINMIREEGLRPTI 251
Query: 909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL 947
                     ++E+      C +GDP  RP  S + K L
Sbjct: 252 PEDCPPRLRNVIEL------CWSGDPKKRPHFSYIVKEL 284

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 100/242 (41%), Gaps = 20/242 (8%)
Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIF 185
           VP G  +  + + L  N +S        S   L +L L  N L G    + + +T L+  
Sbjct: 25  VPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQL 84
Query: 186 TLASN-QLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQI 244
            L+ N QL    P     L +L  ++L    L    P     L +L +L L  NNL    
Sbjct: 85  DLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALP 144
Query: 245 PPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEI 304
             +F +L NL +LFL+ N++      +  GL SL    L  N+++   P     L  L  
Sbjct: 145 DNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMT 204
Query: 305 LHLFSNNFTGKIPSSLASMPKLQVLQL----------------WSNQFSG---EIPSNLG 345
           L+LF+NN +      L  +  LQ L+L                W  +F G   E+P NL 
Sbjct: 205 LYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCNLP 264
Query: 346 KQ 347
           ++
Sbjct: 265 QR 266

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 80/222 (36%), Gaps = 26/222 (11%)
Query: 235 LVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDN-YLSGEI 292
            ++ N    +P  SF +  NL  L+L+ N L G    +  GL  L   DLSDN  L    
Sbjct: 37  FLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVD 96
Query: 293 PEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTV 352
           P     L +L  LHL         P     +  LQ L L  N     +P N         
Sbjct: 97  PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDN--------- 146
Query: 353 IDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGEL 412
                         T  D G+L  L L  N +     ++     SL R+ L  N ++   
Sbjct: 147 --------------TFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVH 192
Query: 413 SSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGN 454
              F  L  +  L +  N+LS    E    + SLQ L L  N
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 118/279 (42%), Gaps = 45/279 (16%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM------HPNIVR 745
           GK G    +K R + +     +K +I  ++   +       +F + +       HPNIV+
Sbjct: 28  GKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVK 87
Query: 746 LHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPS 801
           L+G+  +     +V E++   +L   L +    + W  + ++ + IA  + ++  + +P 
Sbjct: 88  LYGLMHN--PPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQ-NQNPP 144
Query: 802 VVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----SKSINSSA-------YVAPET-- 848
           +V  D+    + +   DE     + P  A   D     +S++S +       ++APET  
Sbjct: 145 IVHRDLRSPNIFLQSLDE-----NAPVCAKVADFSLSQQSVHSVSGLLGNFQWMAPETIG 199
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI 908
            E +  TEK D Y F +IL  +LTG+ P D           + +  + +   +  + P I
Sbjct: 200 AEEESYTEKADTYSFAMILYTILTGEGPFDE--------YSYGKIKFINMIREEGLRPTI 251
Query: 909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL 947
                     ++E+      C +GDP  RP  S + K L
Sbjct: 252 PEDCPPRLRNVIEL------CWSGDPKKRPHFSYIVKEL 284

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 15/162 (9%)
Query: 730 DVSQFGKL---IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL--RNLSWERRRKVA 784
           +V Q  KL   + HPNI+ L GVC  E    LV E+  G  L+ VL  + +  +     A
Sbjct: 52  NVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWA 111
Query: 785 IGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE------PHLRLSVPGLA----YCTD 834
           + IA+ + +LH      ++  D+    +++  K E        L+++  GLA      T 
Sbjct: 112 VQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTK 171
Query: 835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
             +  + A++APE   +   ++  D++ +G++L +LLTG+ P
Sbjct: 172 MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVP 213

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 95/219 (43%), Gaps = 22/219 (10%)
Query: 683 TTEENLTSR-------GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDV---S 732
           TT  +L+ R       G  G+S  +  R L  D + V  K++  +     SF+      +
Sbjct: 5   TTPSHLSDRYELGEILGFGGMSEVHLARDL-RDHRDVAVKVLRADLARDPSFYLRFRREA 63
Query: 733 QFGKLIMHPNIVRLHGVCRSEKAA----YLVYEYIEGKELSEVLRNLSWERRRKVAIGIA 788
           Q    + HP IV ++    +E  A    Y+V EY++G  L +++        ++    IA
Sbjct: 64  QNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIA 123
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR-------LSVPGLAYCTDSKSINSS 841
            A + L+F     ++  DV P  +++   +   +        ++  G +    +  I ++
Sbjct: 124 DACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTA 183
Query: 842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
            Y++PE      +  + D+Y  G +L ++LTG+ P   D
Sbjct: 184 QYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD 222

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 95/219 (43%), Gaps = 22/219 (10%)
Query: 683 TTEENLTSR-------GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDV---S 732
           TT  +L+ R       G  G+S  +  R L  D + V  K++  +     SF+      +
Sbjct: 5   TTPSHLSDRYELGEILGFGGMSEVHLARDL-RDHRDVAVKVLRADLARDPSFYLRFRREA 63
Query: 733 QFGKLIMHPNIVRLHGVCRSEKAA----YLVYEYIEGKELSEVLRNLSWERRRKVAIGIA 788
           Q    + HP IV ++    +E  A    Y+V EY++G  L +++        ++    IA
Sbjct: 64  QNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIA 123
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR-------LSVPGLAYCTDSKSINSS 841
            A + L+F     ++  DV P  +++   +   +        ++  G +    +  I ++
Sbjct: 124 DACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTA 183
Query: 842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
            Y++PE      +  + D+Y  G +L ++LTG+ P   D
Sbjct: 184 QYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD 222

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 1/210 (0%)
Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIF 185
           VP+G  +  + + L  N +S        +   L +L L  NVL      + + +  L+  
Sbjct: 25  VPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL 84
Query: 186 TLASNQLIGSI-PREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQI 244
            L+ N  + S+ P     L  L  ++L    L    P     L +L +L L  N L    
Sbjct: 85  DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 144
Query: 245 PPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEI 304
             +F +L NL +LFL+ N+++    ++  GL SL    L  N ++   P     L  L  
Sbjct: 145 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 204
Query: 305 LHLFSNNFTGKIPSSLASMPKLQVLQLWSN 334
           L+LF+NN +     +LA +  LQ L+L  N
Sbjct: 205 LYLFANNLSALPTEALAPLRALQYLRLNDN 234

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 77/222 (34%), Gaps = 26/222 (11%)
Query: 235 LVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDN-YLSGEI 292
            ++ N    +P  SF    NL  L+L+ N L      +  GL  L   DLSDN  L    
Sbjct: 37  FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 96
Query: 293 PEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTV 352
           P     L  L  LHL         P     +  LQ L L  N     +P           
Sbjct: 97  PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPD---------- 145
Query: 353 IDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGEL 412
                        +T  D G+L  L L  N +      +     SL R+ L  NR++   
Sbjct: 146 -------------DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 192
Query: 413 SSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGN 454
              F  L  +  L +  N+LS    E    + +LQ L L  N
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 1/210 (0%)
Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIF 185
           VP+G  +  + + L  N +S        +   L +L L  NVL      + + +  L+  
Sbjct: 26  VPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL 85
Query: 186 TLASNQLIGSI-PREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQI 244
            L+ N  + S+ P     L  L  ++L    L    P     L +L +L L  N L    
Sbjct: 86  DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145
Query: 245 PPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEI 304
             +F +L NL +LFL+ N+++    ++  GL SL    L  N ++   P     L  L  
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205
Query: 305 LHLFSNNFTGKIPSSLASMPKLQVLQLWSN 334
           L+LF+NN +     +LA +  LQ L+L  N
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDN 235

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 77/222 (34%), Gaps = 26/222 (11%)
Query: 235 LVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDN-YLSGEI 292
            ++ N    +P  SF    NL  L+L+ N L      +  GL  L   DLSDN  L    
Sbjct: 38  FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 97
Query: 293 PEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTV 352
           P     L  L  LHL         P     +  LQ L L  N     +P           
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPD---------- 146
Query: 353 IDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGEL 412
                        +T  D G+L  L L  N +      +     SL R+ L  NR++   
Sbjct: 147 -------------DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 413 SSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGN 454
              F  L  +  L +  N+LS    E    + +LQ L L  N
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 95/219 (43%), Gaps = 22/219 (10%)
Query: 683 TTEENLTSR-------GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDV---S 732
           TT  +L+ R       G  G+S  +  R L  D + V  K++  +     SF+      +
Sbjct: 5   TTPSHLSDRYELGEILGFGGMSEVHLARDL-RDHRDVAVKVLRADLARDPSFYLRFRREA 63
Query: 733 QFGKLIMHPNIVRLHGVCRSEKAA----YLVYEYIEGKELSEVLRNLSWERRRKVAIGIA 788
           Q    + HP IV ++    +E  A    Y+V EY++G  L +++        ++    IA
Sbjct: 64  QNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIA 123
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-------RLSVPGLAYCTDSKSINSS 841
            A + L+F     ++  DV P  +++   +   +        ++  G +    +  I ++
Sbjct: 124 DACQALNFSHQNGIIHRDVKPANILISATNAVKVVDFGIARAIADSGNSVXQTAAVIGTA 183
Query: 842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
            Y++PE      +  + D+Y  G +L ++LTG+ P   D
Sbjct: 184 QYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD 222

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSI-SNITSLQI 184
           VP G  +  +IL L +N ++   P    S   LK L LG N L G +P+ +  ++T L +
Sbjct: 34  VPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTV 92
Query: 185 FTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQI 244
             L +NQL         +L +LK +++  N L+ E+P+ I  LT L HL L  N L    
Sbjct: 93  LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP 151
Query: 245 PPSFGNLSNLRYLFLYQN 262
             +F  LS+L + +L+ N
Sbjct: 152 HGAFDRLSSLTHAYLFGN 169

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Query: 180 TSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLVYN 238
           T+ QI  L  NQ+    P     L NLK +YLG N L G +P  + D LT L  LDL  N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 239 NLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVI- 297
            LT      F  L +L+ LF+  NKLT  +P+ I  L  L    L  N L   IP     
Sbjct: 99  QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFD 156
Query: 298 QLQNLEILHLFSN 310
           +L +L   +LF N
Sbjct: 157 RLSSLTHAYLFGN 169

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 21/151 (13%)
Query: 737 LIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK------- 789
           ++ HP I+R+ G  +  +  +++ +YIEG EL  +LR     + ++    +AK       
Sbjct: 62  IVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLR-----KSQRFPNPVAKFYAAEVC 116
Query: 790 -ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSI--NSSAYVA 845
            AL +LH   S  ++  D+ P  +++D     H++++  G A Y  D       +  Y+A
Sbjct: 117 LALEYLH---SKDIIYRDLKPENILLDKNG--HIKITDFGFAKYVPDVTYXLCGTPDYIA 171
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE   +K   +  D + FG+++ ++L G +P
Sbjct: 172 PEVVSTKPYNKSIDWWSFGILIYEMLAGYTP 202

>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 (rsk2) Length = 342

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 18/182 (9%)
Query: 706 ANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG 765
           A +M+F VK IID +    +     + ++G+   HPNI+ L  V    K  Y+V E ++G
Sbjct: 45  ATNMEFAVK-IIDKSKRDPTEEIEILLRYGQ---HPNIITLKDVYDDGKYVYVVTELMKG 100
Query: 766 KE-LSEVLRNLSWERRRKVAI--GIAKALRFLHFHCSPSVVAGDVSPGKVI-VDGKDEPH 821
            E L ++LR   +  R   A+   I K + +LH   +  VV  D+ P  ++ VD    P 
Sbjct: 101 GELLDKILRQKFFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPE 157
Query: 822 -LRLSVPGLAYCTDSKS------INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGK 874
            +R+   G A    +++        ++ +VAPE  E +      DI+  G++L  +LTG 
Sbjct: 158 SIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGY 217
Query: 875 SP 876
           +P
Sbjct: 218 TP 219

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 18/182 (9%)
Query: 706 ANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG 765
           A +M++ VK +ID +    S     + ++G+   HPNI+ L  V    K  YLV E + G
Sbjct: 50  ATNMEYAVK-VIDKSKRDPSEEIEILLRYGQ---HPNIITLKDVYDDGKHVYLVTELMRG 105
Query: 766 KE-LSEVLRNLSWERRRK--VAIGIAKALRFLHFHCSPSVVAGDVSPGKVI-VDGKDEPH 821
            E L ++LR   +  R    V   I K + +LH   S  VV  D+ P  ++ VD    P 
Sbjct: 106 GELLDKILRQKFFSEREASFVLHTIGKTVEYLH---SQGVVHRDLKPSNILYVDESGNPE 162
Query: 822 -LRLSVPGLAYCTDSKS------INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGK 874
            LR+   G A    +++        ++ +VAPE  + +   E  DI+  G++L  +L G 
Sbjct: 163 CLRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGY 222
Query: 875 SP 876
           +P
Sbjct: 223 TP 224

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 22/213 (10%)
Query: 686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL--IMHPNI 743
           E L + G        K+R   +D + +V K +D  ++T +     VS+   L  + HPNI
Sbjct: 9   EVLYTIGTGSYGRCQKIRR-KSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNI 67
Query: 744 VRLHG--VCRSEKAAYLVYEYIEGKELSEVLRNLSWERRR-------KVAIGIAKALRFL 794
           VR +   + R+    Y+V EY EG +L+ V+   + ER+        +V   +  AL+  
Sbjct: 68  VRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKEC 127
Query: 795 HFHCSP--SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS------INSSAYVAP 846
           H       +V+  D+ P  V +DGK   +++L   GLA   +  +      + +  Y++P
Sbjct: 128 HRRSDGGHTVLHRDLKPANVFLDGKQ--NVKLGDFGLARILNHDTSFAKTFVGTPYYMSP 185
Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSPADA 879
           E        EK DI+  G +L +L     P  A
Sbjct: 186 EQMNRMSYNEKSDIWSLGCLLYELCALMPPFTA 218

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 22/213 (10%)
Query: 686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL--IMHPNI 743
           E L + G        K+R   +D + +V K +D  ++T +     VS+   L  + HPNI
Sbjct: 9   EVLYTIGTGSYGRCQKIRR-KSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNI 67
Query: 744 VRLHG--VCRSEKAAYLVYEYIEGKELSEVLRNLSWERRR-------KVAIGIAKALRFL 794
           VR +   + R+    Y+V EY EG +L+ V+   + ER+        +V   +  AL+  
Sbjct: 68  VRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKEC 127
Query: 795 HFHCSP--SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS------INSSAYVAP 846
           H       +V+  D+ P  V +DGK   +++L   GLA   +  +      + +  Y++P
Sbjct: 128 HRRSDGGHTVLHRDLKPANVFLDGKQ--NVKLGDFGLARILNHDTSFAKAFVGTPYYMSP 185
Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSPADA 879
           E        EK DI+  G +L +L     P  A
Sbjct: 186 EQMNRMSYNEKSDIWSLGCLLYELCALMPPFTA 218

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 95/218 (43%), Gaps = 20/218 (9%)
Query: 683 TTEENLTSRGKKGVSSSYKVRS---LANDMQF---VVKKIIDVNTITTSSFWPDV---SQ 733
           TT  +L+ R + G    +   S   LA D++    V  K++  +     SF+      +Q
Sbjct: 5   TTPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQ 64
Query: 734 FGKLIMHPNIVRLHGVCRSEKAA----YLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK 789
               + HP IV ++    +E  A    Y+V EY++G  L +++        ++    IA 
Sbjct: 65  NAAALNHPAIVAVYATGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIAD 124
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR-------LSVPGLAYCTDSKSINSSA 842
           A + L+F     ++  DV P  +++   +   +        ++  G +    +  I ++ 
Sbjct: 125 ACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQ 184
Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           Y++PE      +  + D+Y  G +L ++LTG+ P   D
Sbjct: 185 YLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD 222

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 18/182 (9%)
Query: 706 ANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG 765
           A +M++ VK +ID +    S     + ++G+   HPNI+ L  V    K  YLV E + G
Sbjct: 50  ATNMEYAVK-VIDKSKRDPSEEIEILLRYGQ---HPNIITLKDVYDDGKHVYLVTELMRG 105
Query: 766 KE-LSEVLRNLSWERRRK--VAIGIAKALRFLHFHCSPSVVAGDVSPGKVI-VDGKDEPH 821
            E L ++LR   +  R    V   I K + +LH   S  VV  D+ P  ++ VD    P 
Sbjct: 106 GELLDKILRQKFFSEREASFVLHTIGKTVEYLH---SQGVVHRDLKPSNILYVDESGNPE 162
Query: 822 -LRLSVPGLAYCTDSKS------INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGK 874
            LR+   G A    +++        ++ +VAPE  + +   E  DI+  G++L  +L G 
Sbjct: 163 CLRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGY 222
Query: 875 SP 876
           +P
Sbjct: 223 TP 224

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 22/213 (10%)
Query: 686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL--IMHPNI 743
           E L + G        K+R   +D + +V K +D  ++T +     VS+   L  + HPNI
Sbjct: 9   EVLYTIGTGSYGRCQKIRR-KSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNI 67
Query: 744 VRLHG--VCRSEKAAYLVYEYIEGKELSEVLRNLSWERRR-------KVAIGIAKALRFL 794
           VR +   + R+    Y+V EY EG +L+ V+   + ER+        +V   +  AL+  
Sbjct: 68  VRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKEC 127
Query: 795 HFHCSP--SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS------INSSAYVAP 846
           H       +V+  D+ P  V +DGK   +++L   GLA   +         + +  Y++P
Sbjct: 128 HRRSDGGHTVLHRDLKPANVFLDGKQ--NVKLGDFGLARILNHDEDFAKEFVGTPYYMSP 185
Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSPADA 879
           E        EK DI+  G +L +L     P  A
Sbjct: 186 EQMNRMSYNEKSDIWSLGCLLYELCALMPPFTA 218

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 95/218 (43%), Gaps = 20/218 (9%)
Query: 683 TTEENLTSRGKKGVSSSYKVRS---LANDMQF---VVKKIIDVNTITTSSFWPDV---SQ 733
           TT  +L+ R + G    +   S   LA D++    V  K++  +     SF+      +Q
Sbjct: 22  TTPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQ 81
Query: 734 FGKLIMHPNIVRLHGVCRSEKAA----YLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK 789
               + HP IV ++    +E  A    Y+V EY++G  L +++        ++    IA 
Sbjct: 82  NAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIAD 141
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR-------LSVPGLAYCTDSKSINSSA 842
           A + L+F     ++  DV P  +++   +   +        ++  G +    +  I ++ 
Sbjct: 142 ACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQ 201
Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           Y++PE      +  + D+Y  G +L ++LTG+ P   D
Sbjct: 202 YLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD 239

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 95/218 (43%), Gaps = 20/218 (9%)
Query: 683 TTEENLTSRGKKGVSSSYKVRS---LANDMQF---VVKKIIDVNTITTSSFWPDV---SQ 733
           TT  +L+ R + G    +   S   LA D++    V  K++  +     SF+      +Q
Sbjct: 5   TTPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQ 64
Query: 734 FGKLIMHPNIVRLHGVCRSEKAA----YLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK 789
               + HP IV ++    +E  A    Y+V EY++G  L +++        ++    IA 
Sbjct: 65  NAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIAD 124
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR-------LSVPGLAYCTDSKSINSSA 842
           A + L+F     ++  DV P  +++   +   +        ++  G +    +  I ++ 
Sbjct: 125 ACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQ 184
Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           Y++PE      +  + D+Y  G +L ++LTG+ P   D
Sbjct: 185 YLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD 222

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 18/150 (12%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK-ALRFLHF 796
           + HP IV+LH   ++E   YL+ +++ G +L   L          V   +A+ AL   H 
Sbjct: 84  VNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHL 143
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN----------SSAYVAP 846
           H S  ++  D+ P  +++D  +E H++L+  GL+     +SI+          +  Y+AP
Sbjct: 144 H-SLGIIYRDLKPENILLD--EEGHIKLTDFGLS----KESIDHEKKAYSFCGTVEYMAP 196
Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           E    +  T+  D + FG+++ ++LTG  P
Sbjct: 197 EVVNRRGHTQSADWWSFGVLMFEMLTGTLP 226

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 18/150 (12%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK-ALRFLHF 796
           + HP IV+LH   ++E   YL+ +++ G +L   L          V   +A+ AL   H 
Sbjct: 83  VNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHL 142
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN----------SSAYVAP 846
           H S  ++  D+ P  +++D  +E H++L+  GL+     +SI+          +  Y+AP
Sbjct: 143 H-SLGIIYRDLKPENILLD--EEGHIKLTDFGLS----KESIDHEKKAYSFCGTVEYMAP 195
Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           E    +  T+  D + FG+++ ++LTG  P
Sbjct: 196 EVVNRRGHTQSADWWSFGVLMFEMLTGTLP 225

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 88/173 (50%), Gaps = 15/173 (8%)
Query: 715 KIIDVNTITTSSFWPDVSQFG--KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL-SEV 771
           KII   +++TSS    + +    KL+ HPNI++L+     ++  YLV E  +G EL  E+
Sbjct: 68  KIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEI 127
Query: 772 LRNLSWERRRKVAI--GIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPG 828
           +  + +       I   +   + +LH H   ++V  D+ P  ++++ K++  L ++   G
Sbjct: 128 IHRMKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFG 184
Query: 829 LAYCTDSKS-----INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           L+   +++      + ++ Y+APE    K   EK D++  G+IL  LL G  P
Sbjct: 185 LSAVFENQKKMKERLGTAYYIAPEVLRKK-YDEKCDVWSIGVILFILLAGYPP 236

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY    E+ + L+ LS    ++ A  I +    L + 
Sbjct: 70  LRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELANALSYC 129
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 130 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 185
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 186 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 214

>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor Length = 349

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
           HP +V LH   ++E   + V EY+ G +L    +  R L  E  R  +  I+ AL +LH 
Sbjct: 65  HPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH- 123
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKE 850
                ++  D+    V++D   E H++L+  G+         T S    +  Y+APE   
Sbjct: 124 --ERGIIYRDLKLDNVLLDS--EGHIKLTDYGMCKEGLRPGDTTSXFCGTPNYIAPEILR 179
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPAD 878
            +D     D +  G+++ +++ G+SP D
Sbjct: 180 GEDYGFSVDWWALGVLMFEMMAGRSPFD 207

>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical Protein Kinase C-Iota Length = 364

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
           HP +V LH   ++E   + V EY+ G +L    +  R L  E  R  +  I+ AL +LH 
Sbjct: 80  HPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH- 138
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKE 850
                ++  D+    V++D   E H++L+  G+         T S    +  Y+APE   
Sbjct: 139 --ERGIIYRDLKLDNVLLDS--EGHIKLTDYGMCKEGLRPGDTTSXFCGTPNYIAPEILR 194
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPAD 878
            +D     D +  G+++ +++ G+SP D
Sbjct: 195 GEDYGFSVDWWALGVLMFEMMAGRSPFD 222

>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From Par-3 Length = 396

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
           HP +V LH   ++E   + V EY+ G +L    +  R L  E  R  +  I+ AL +LH 
Sbjct: 112 HPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH- 170
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKE 850
                ++  D+    V++D   E H++L+  G+         T S    +  Y+APE   
Sbjct: 171 --ERGIIYRDLKLDNVLLDS--EGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILR 226
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPAD 878
            +D     D +  G+++ +++ G+SP D
Sbjct: 227 GEDYGFSVDWWALGVLMFEMMAGRSPFD 254

>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain Length = 345

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
           HP +V LH   ++E   + V EY+ G +L    +  R L  E  R  +  I+ AL +LH 
Sbjct: 69  HPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH- 127
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKE 850
                ++  D+    V++D   E H++L+  G+         T S    +  Y+APE   
Sbjct: 128 --ERGIIYRDLKLDNVLLDS--EGHIKLTDYGMCKEGLRPGDTTSXFCGTPNYIAPEILR 183
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPAD 878
            +D     D +  G+++ +++ G+SP D
Sbjct: 184 GEDYGFSVDWWALGVLMFEMMAGRSPFD 211

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 10/144 (6%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK-ALRFLHFHC 798
           HP IV+LH   ++E   YL+ +++ G +L   L          V   +A+ AL   H H 
Sbjct: 85  HPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLH- 143
Query: 799 SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT---DSKSIN---SSAYVAPETKESK 852
           S  ++  D+ P  +++D  +E H++L+  GL+  +   + K+ +   +  Y+APE    +
Sbjct: 144 SLGIIYRDLKPENILLD--EEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRR 201
Query: 853 DITEKGDIYGFGLILIDLLTGKSP 876
             T+  D + FG+++ ++LTG  P
Sbjct: 202 GHTQSADWWSFGVLMFEMLTGTLP 225

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY    E+ + L+ LS    ++ A  I +    L + 
Sbjct: 70  LRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELANALSYC 129
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S           Y+ PE  E 
Sbjct: 130 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRXXLXGTLDYLPPEMIEG 185
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 186 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 214

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
           G+      Y    L ND + +   +  +N IT      +VSQF    +IM    HPN++ 
Sbjct: 44  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 100
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
           L G+C RSE +  +V  Y++  +L   +RN +     K  IG    +AK ++FL    S 
Sbjct: 101 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASK 157
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS----------AYVAPETKE 850
             V  D++    ++D K    ++++  GLA     K  +S            ++A E+ +
Sbjct: 158 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ 215
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           ++  T K D++ FG++L +L+T  +P   D
Sbjct: 216 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 245

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
           G+      Y    L ND + +   +  +N IT      +VSQF    +IM    HPN++ 
Sbjct: 40  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 96
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
           L G+C RSE +  +V  Y++  +L   +RN +     K  IG    +AK ++FL    S 
Sbjct: 97  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASK 153
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS----------AYVAPETKE 850
             V  D++    ++D K    ++++  GLA     K  +S            ++A E+ +
Sbjct: 154 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ 211
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           ++  T K D++ FG++L +L+T  +P   D
Sbjct: 212 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 241

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
           G+      Y    L ND + +   +  +N IT      +VSQF    +IM    HPN++ 
Sbjct: 37  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 93
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
           L G+C RSE +  +V  Y++  +L   +RN +     K  IG    +AK ++FL    S 
Sbjct: 94  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASK 150
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS----------AYVAPETKE 850
             V  D++    ++D K    ++++  GLA     K  +S            ++A E+ +
Sbjct: 151 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ 208
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           ++  T K D++ FG++L +L+T  +P   D
Sbjct: 209 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 238

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 14/178 (7%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQ--FGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
           V  KIID   + +SS      +    K++ HPNIV+L  V  +EK  YLV EY  G E+ 
Sbjct: 35  VAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVF 94
Query: 770 EVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL 829
           + L    W + ++      + +  + +     +V  D+    +++D      + + +   
Sbjct: 95  DYLVAHGWMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDAD----MNIKIADF 150
Query: 830 AYCTDSKSIN-------SSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTGKSPADA 879
            +  +    N       S  Y APE  + K     + D++  G+IL  L++G  P D 
Sbjct: 151 GFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG 208

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 15/153 (9%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR------NLSWERRRKVAIGIAK 789
           K + HPNIV   G         +V EY+    L  +L        L   RR  +A  +AK
Sbjct: 89  KRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAK 148
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA------YCTDSKSINSSAY 843
            + +LH + +P +V  D+    ++VD K    +++   GL+      +     +  +  +
Sbjct: 149 GMNYLH-NRNPPIVHRDLKSPNLLVDKKYT--VKVCDFGLSRLKASXFLXSKXAAGTPEW 205
Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           +APE    +   EK D+Y FG+IL +L T + P
Sbjct: 206 MAPEVLRDEPSNEKSDVYSFGVILWELATLQQP 238

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
           G+      Y    L ND + +   +  +N IT      +VSQF    +IM    HPN++ 
Sbjct: 39  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 95
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
           L G+C RSE +  +V  Y++  +L   +RN +     K  IG    +AK ++FL    S 
Sbjct: 96  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASK 152
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS----------AYVAPETKE 850
             V  D++    ++D K    ++++  GLA     K  +S            ++A E+ +
Sbjct: 153 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ 210
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           ++  T K D++ FG++L +L+T  +P   D
Sbjct: 211 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 240

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
           G+      Y    L ND + +   +  +N IT      +VSQF    +IM    HPN++ 
Sbjct: 39  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 95
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
           L G+C RSE +  +V  Y++  +L   +RN +     K  IG    +AK ++FL    S 
Sbjct: 96  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASK 152
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS----------AYVAPETKE 850
             V  D++    ++D K    ++++  GLA     K  +S            ++A E+ +
Sbjct: 153 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ 210
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           ++  T K D++ FG++L +L+T  +P   D
Sbjct: 211 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 240

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 68  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 127
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +A      Y+ PE  E 
Sbjct: 128 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEG 183
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 212

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
           G+      Y    L ND + +   +  +N IT      +VSQF    +IM    HPN++ 
Sbjct: 40  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 96
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
           L G+C RSE +  +V  Y++  +L   +RN +     K  IG    +AK ++FL    S 
Sbjct: 97  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASK 153
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS----------AYVAPETKE 850
             V  D++    ++D K    ++++  GLA     K  +S            ++A E+ +
Sbjct: 154 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMLDKEFDSVHNKTGAKLPVKWMALESLQ 211
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           ++  T K D++ FG++L +L+T  +P   D
Sbjct: 212 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 241

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 65  LRHPNILRLYGYFHDSTRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +A      Y+ PE  E 
Sbjct: 125 HSKKVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEG 180
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 209

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
           G+      Y    L ND + +   +  +N IT      +VSQF    +IM    HPN++ 
Sbjct: 98  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 154
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
           L G+C RSE +  +V  Y++  +L   +RN +     K  IG    +AK ++FL    S 
Sbjct: 155 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASK 211
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS----------AYVAPETKE 850
             V  D++    ++D K    ++++  GLA     K  +S            ++A E+ +
Sbjct: 212 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ 269
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           ++  T K D++ FG++L +L+T  +P   D
Sbjct: 270 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 299

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 23/155 (14%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKV----AIGIAKAL 791
           K + HPNI++L  V   +K  YLV E+ EG EL E + N     R K     A  I K +
Sbjct: 101 KSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIIN-----RHKFDECDAANIMKQI 155
Query: 792 R----FLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLA--YCTDSK---SINSS 841
                +LH H   ++V  D+ P  ++++ K+   ++++   GL+  +  D K    + ++
Sbjct: 156 LSGICYLHKH---NIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTA 212
Query: 842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
            Y+APE  + K   EK D++  G+I+  LL G  P
Sbjct: 213 YYIAPEVLKKK-YNEKCDVWSCGVIMYILLCGYPP 246

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 65  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +A      Y+ PE  E 
Sbjct: 125 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEG 180
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 209

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
           G+      Y    L ND + +   +  +N IT      +VSQF    +IM    HPN++ 
Sbjct: 38  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 94
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
           L G+C RSE +  +V  Y++  +L   +RN +     K  IG    +AK +++L    S 
Sbjct: 95  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 151
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
             V  D++    ++D K    ++++  GLA   Y  +  S+++         ++A E+ +
Sbjct: 152 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEXXSVHNKTGAKLPVKWMALESLQ 209
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           ++  T K D++ FG++L +L+T  +P   D
Sbjct: 210 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 239

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
           G+      Y    L ND + +   +  +N IT      +VSQF    +IM    HPN++ 
Sbjct: 58  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 114
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
           L G+C RSE +  +V  Y++  +L   +RN +     K  IG    +AK +++L    S 
Sbjct: 115 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 171
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
             V  D++    ++D K    ++++  GLA   Y  +  S+++         ++A E+ +
Sbjct: 172 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ 229
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           ++  T K D++ FG++L +L+T  +P   D
Sbjct: 230 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 259

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
           G+      Y    L ND + +   +  +N IT      +VSQF    +IM    HPN++ 
Sbjct: 57  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 113
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
           L G+C RSE +  +V  Y++  +L   +RN +     K  IG    +AK +++L    S 
Sbjct: 114 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 170
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
             V  D++    ++D K    ++++  GLA   Y  +  S+++         ++A E+ +
Sbjct: 171 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ 228
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           ++  T K D++ FG++L +L+T  +P   D
Sbjct: 229 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 258

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR------NLSWERRRKVAIGIAK 789
           K + HPNIV   G         +V EY+    L  +L        L   RR  +A  +AK
Sbjct: 89  KRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAK 148
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------Y 843
            + +LH + +P +V  ++    ++VD K    +++   GL+    S  ++S +      +
Sbjct: 149 GMNYLH-NRNPPIVHRNLKSPNLLVDKKYT--VKVCDFGLSRLKASTFLSSKSAAGTPEW 205
Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           +APE    +   EK D+Y FG+IL +L T + P
Sbjct: 206 MAPEVLRDEPSNEKSDVYSFGVILWELATLQQP 238

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
           G+      Y    L ND + +   +  +N IT      +VSQF    +IM    HPN++ 
Sbjct: 39  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 95
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
           L G+C RSE +  +V  Y++  +L   +RN +     K  IG    +AK +++L    S 
Sbjct: 96  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 152
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
             V  D++    ++D K    ++++  GLA   Y  +  S+++         ++A E+ +
Sbjct: 153 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ 210
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           ++  T K D++ FG++L +L+T  +P   D
Sbjct: 211 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 240

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
           G+      Y    L ND + +   +  +N IT      +VSQF    +IM    HPN++ 
Sbjct: 37  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 93
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
           L G+C RSE +  +V  Y++  +L   +RN +     K  IG    +AK +++L    S 
Sbjct: 94  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 150
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
             V  D++    ++D K    ++++  GLA   Y  +  S+++         ++A E+ +
Sbjct: 151 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ 208
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           ++  T K D++ FG++L +L+T  +P   D
Sbjct: 209 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 238

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
           G+      Y    L ND + +   +  +N IT      +VSQF    +IM    HPN++ 
Sbjct: 34  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 90
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
           L G+C RSE +  +V  Y++  +L   +RN +     K  IG    +AK +++L    S 
Sbjct: 91  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 147
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
             V  D++    ++D K    ++++  GLA   Y  +  S+++         ++A E+ +
Sbjct: 148 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ 205
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           ++  T K D++ FG++L +L+T  +P   D
Sbjct: 206 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 235

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
           G+      Y    L ND + +   +  +N IT      +VSQF    +IM    HPN++ 
Sbjct: 38  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 94
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
           L G+C RSE +  +V  Y++  +L   +RN +     K  IG    +AK +++L    S 
Sbjct: 95  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 151
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
             V  D++    ++D K    ++++  GLA   Y  +  S+++         ++A E+ +
Sbjct: 152 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ 209
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           ++  T K D++ FG++L +L+T  +P   D
Sbjct: 210 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 239

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
           G+      Y    L ND + +   +  +N IT      +VSQF    +IM    HPN++ 
Sbjct: 31  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 87
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
           L G+C RSE +  +V  Y++  +L   +RN +     K  IG    +AK +++L    S 
Sbjct: 88  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 144
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
             V  D++    ++D K    ++++  GLA   Y  +  S+++         ++A E+ +
Sbjct: 145 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ 202
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           ++  T K D++ FG++L +L+T  +P   D
Sbjct: 203 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 232

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
           G+      Y    L ND + +   +  +N IT      +VSQF    +IM    HPN++ 
Sbjct: 39  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 95
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
           L G+C RSE +  +V  Y++  +L   +RN +     K  IG    +AK +++L    S 
Sbjct: 96  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 152
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
             V  D++    ++D K    ++++  GLA   Y  +  S+++         ++A E+ +
Sbjct: 153 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ 210
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           ++  T K D++ FG++L +L+T  +P   D
Sbjct: 211 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 240

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF--GKLIM----HPNIVR 745
           G+      Y    L ND + +   +  +N IT      +VSQF    +IM    HPN++ 
Sbjct: 36  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVLS 92
Query: 746 LHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLHFHCSP 800
           L G+C RSE +  +V  Y++  +L   +RN +     K  IG    +AK +++L    S 
Sbjct: 93  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 149
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSA-------YVAPETKE 850
             V  D++    ++D K    ++++  GLA   Y  +  S+++         ++A E+ +
Sbjct: 150 KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ 207
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           ++  T K D++ FG++L +L+T  +P   D
Sbjct: 208 TQKFTTKSDVWSFGVLLWELMTRGAPPYPD 237

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 67  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 126
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 127 HSKRVIHRDIKPENLLLGSAGE----LKIANFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 182
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 183 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 211

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 70  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 129
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 130 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEXIEG 185
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 186 RXHDEKVDLWSLGVLCYEFLVGKPPFEAN 214

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 68  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 127
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 128 HSKRVIHRDIKPENLLLGSAGE----LKIANFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 183
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 212

>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2: Se-Met Derivative Length = 342

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 18/182 (9%)
Query: 706 ANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG 765
           A + +F VK IID +    +     + ++G+   HPNI+ L  V    K  Y+V E  +G
Sbjct: 45  ATNXEFAVK-IIDKSKRDPTEEIEILLRYGQ---HPNIITLKDVYDDGKYVYVVTELXKG 100
Query: 766 KE-LSEVLRNLSWERRRKVAI--GIAKALRFLHFHCSPSVVAGDVSPGKVI-VDGKDEPH 821
            E L ++LR   +  R   A+   I K + +LH   +  VV  D+ P  ++ VD    P 
Sbjct: 101 GELLDKILRQKFFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPE 157
Query: 822 -LRLSVPGLAYCTDSKS------INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGK 874
            +R+   G A    +++        ++ +VAPE  E +      DI+  G++L   LTG 
Sbjct: 158 SIRICDFGFAKQLRAENGLLXTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTXLTGY 217
Query: 875 SP 876
           +P
Sbjct: 218 TP 219

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 65  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 125 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 180
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 209

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFL 794
           + H NIV +  V   +   YLV EYIEG  LSE + +   LS +        I   ++  
Sbjct: 68  LSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHA 127
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS-------AYVAPE 847
           H      +V  D+ P  +++D      L++   G+A      S+  +        Y +PE
Sbjct: 128 H---DMRIVHRDIKPQNILIDSNKT--LKIFDFGIAKALSETSLTQTNHVLGTVQYFSPE 182
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESI 887
             + +   E  DIY  G++L ++L G+ P + +  V  +I
Sbjct: 183 QAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAI 222

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 68  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 127
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 128 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 183
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 212

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 17/154 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRK------VAIGIAK 789
           K + HPNI+++  V       Y+V E  EG EL E  R +S + R K      VA  + +
Sbjct: 75  KSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLE--RIVSAQARGKALSEGYVAELMKQ 132
Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLA--YCTDSKSINSSA--- 842
            +  L +  S  VV  D+ P  ++      PH  + +   GLA  + +D  S N++    
Sbjct: 133 MMNALAYFHSQHVVHKDLKPENILFQ-DTSPHSPIKIIDFGLAELFKSDEHSTNAAGTAL 191
Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           Y+APE  + +D+T K DI+  G+++  LLTG  P
Sbjct: 192 YMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLP 224

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 70  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 129
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 130 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 185
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 186 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 214

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 111/245 (45%), Gaps = 38/245 (15%)
Query: 48  TFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIXX 107
             CK +G  C  + + N+++ S+K ++  I S+I      + ++L SN+LS  +PS    
Sbjct: 3   ALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIPA--DTKKLDLQSNKLSS-LPSKA-- 56
Query: 108 XXXXXXXXXXXXXXXTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLD---LG 164
                                  L++L +L L++N L   +P   G F  LK L+   + 
Sbjct: 57  --------------------FHRLTKLRLLYLNDNKLQT-LP--AGIFKELKNLETLWVT 93
Query: 165 GNVLVGEIPLSI-SNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKE 223
            N L   +P+ +   + +L    L  NQL    PR    L  L ++ LGYN L   +PK 
Sbjct: 94  DNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKG 151
Query: 224 IGD-LTSLNHLDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSF 281
           + D LTSL  L L YNN   ++P  +F  L+ L+ L L  N+L      +   L+ L   
Sbjct: 152 VFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210
Query: 282 DLSDN 286
            L +N
Sbjct: 211 QLQEN 215

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 69  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 128
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 129 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 184
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 185 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 213

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 65  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 125 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTELCGTLDYLPPEMIEG 180
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 209

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 82  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 141
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 142 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 197
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 198 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 226

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 91  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 150
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 151 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 206
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 207 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 235

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 64  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 123
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 124 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 179
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 180 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 208

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 62  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 121
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 122 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 177
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 178 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 206

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 68  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 127
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 128 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 183
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 212

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 715 KIIDVNTITTSSF--WPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
           KII+   ++   F      ++  + + HPNIVRLH   + E   YLV++ + G EL E +
Sbjct: 36  KIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDI 95
Query: 773 RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAY 831
               +      +  I + L  + +  S  +V  ++ P  +++  K +   ++L+  GLA 
Sbjct: 96  VAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAI 155
Query: 832 -CTDSKSINSSA----YVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
              DS++ +  A    Y++PE  +    ++  DI+  G+IL  LL G  P
Sbjct: 156 EVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPP 205

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 715 KIIDVNTITTSSF--WPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
           KII+   ++   F      ++  + + HPNIVRLH   + E   YLV++ + G EL E +
Sbjct: 37  KIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDI 96
Query: 773 RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAY 831
               +      +  I + L  + +  S  +V  ++ P  +++  K +   ++L+  GLA 
Sbjct: 97  VAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAI 156
Query: 832 -CTDSKSINSSA----YVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
              DS++ +  A    Y++PE  +    ++  DI+  G+IL  LL G  P
Sbjct: 157 EVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPP 206

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 66  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 125
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 126 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSCHAPSSRRTTLSGTLDYLPPEMIEG 181
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 182 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 210

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 10/146 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK-ALRFLHF 796
           + HP +V+LH   ++E   YL+ +++ G +L   L          V   +A+ AL   H 
Sbjct: 87  VNHPFVVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALGLDHL 146
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL---AYCTDSKSIN---SSAYVAPETKE 850
           H S  ++  D+ P  +++D  +E H++L+  GL   A   + K+ +   +  Y+APE   
Sbjct: 147 H-SLGIIYRDLKPENILLD--EEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVN 203
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
            +  +   D + +G+++ ++LTG  P
Sbjct: 204 RQGHSHSADWWSYGVLMFEMLTGSLP 229

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 65  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 125 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTXLCGTLDYLPPEMIEG 180
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 209

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 65  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS------AYVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 125 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEG 180
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 209

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 66  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 125
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S           Y+ PE  E 
Sbjct: 126 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRDTLCGTLDYLPPEMIEG 181
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 182 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 210

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 66  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 125
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS------AYVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 126 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEG 181
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 182 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 210

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 70  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 129
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS------AYVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 130 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEG 185
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 186 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 214

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 65  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS------AYVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 125 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEG 180
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 209

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 18/152 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           K + HP +V LH   ++    Y V +YI G EL   L   R     R R  A  IA AL 
Sbjct: 94  KNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALG 153
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA--------YV 844
           +LH   S ++V  D+ P  +++D +   H+ L+  GL  C ++   NS+         Y+
Sbjct: 154 YLH---SLNIVYRDLKPENILLDSQG--HIVLTDFGL--CKENIEHNSTTSTFCGTPEYL 206
Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           APE    +      D +  G +L ++L G  P
Sbjct: 207 APEVLHKQPYDRTVDWWCLGAVLYEMLYGLPP 238

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 396 KSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLS--GRIGEQKWEMTSLQMLNLAG 453
           KSL+R+   +N+  G   SE   LP + FLD+S N LS  G   +  +  TSL+ L+L+ 
Sbjct: 325 KSLKRLTFTSNK-GGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 454 NNFSGKLPDSFGSDQLENLDLSENRF--------------------SGTIPRS-----FG 488
           N       +  G +QLE+LD   +                      S T  R      F 
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 489 RLSELMQLKISRNKLFGD-IPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLS 547
            LS L  LK++ N    + +P+  +  + L  LDLS  QL    P + + +  L  L+++
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502
Query: 548 ENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST---GAFLAINATAVAGNDLCGGDST 604
            NQL         R+ SL ++ +  N +  S P       +L  N+    G+  C G   
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG--- 559
Query: 605 SGLP 608
           SG P
Sbjct: 560 SGKP 563

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 67  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 126
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S           Y+ PE  E 
Sbjct: 127 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEG 182
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 183 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 211

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 11/233 (4%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWP--DVSQFGKLIMHPNIVRLHGV 749
           GK   S   +       ++F  K II+   ++   F      ++  + + HPNIVRLH  
Sbjct: 38  GKGAFSVVRRCVHKTTGLEFAAK-IINTKKLSARDFQKLEREARICRKLQHPNIVRLHDS 96
Query: 750 CRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSP 809
            + E   YLV++ + G EL E +    +      +  I + L  + +  S  +V  ++ P
Sbjct: 97  IQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKP 156
Query: 810 GKVIVDGKDE-PHLRLSVPGLAY-CTDSKSINSSA----YVAPETKESKDITEKGDIYGF 863
             +++  K +   ++L+  GLA    DS++ +  A    Y++PE  +    ++  DI+  
Sbjct: 157 ENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWAC 216
Query: 864 GLILIDLLTGKSPA-DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI 915
           G+IL  LL G  P  D D     + ++   Y Y     DT V P  +  + S+
Sbjct: 217 GVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDT-VTPEAKSLIDSM 268

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 65  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 124
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS------INSSAYVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S        +  Y+ PE  E 
Sbjct: 125 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEG 180
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 209

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 68  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 127
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS------INSSAYVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S        +  Y+ PE  E 
Sbjct: 128 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEG 183
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 212

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           K I HPN++ LH V  ++    L+ E + G EL + L    +L+ E   +    I   + 
Sbjct: 69  KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
           +LH   S  +   D+ P  +++  ++ P  R+ +   GLA+  D          + A+VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPAFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    + +  + D++  G+I   LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 68  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 127
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS------AYVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S           Y+ PE  E 
Sbjct: 128 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRDDLCGTLDYLPPEMIEG 183
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 212

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 39/167 (23%)
Query: 131 LSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASN 190
           LS L+I ++S N         I  +  L  L L GN L  E+P  I N+++L++  L+ N
Sbjct: 231 LSNLQIFNISAN---------IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280
Query: 191 QLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGN 250
           +L  S+P E+G    LK+ Y                          ++N+   +P  FGN
Sbjct: 281 RLT-SLPAELGSCFQLKYFYF-------------------------FDNMVTTLPWEFGN 314
Query: 251 LSNLRYLFLYQNKLTGSIPKSILGLKSLVS--FDLSDNYLSGEIPEE 295
           L NL++L +  N L     K IL  KS+    F L DN     +P E
Sbjct: 315 LCNLQFLGVEGNPLEKQFLK-ILTEKSVTGLIFYLRDNRPEIPLPHE 360

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 91  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 150
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS------AYVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S           Y+ PE  E 
Sbjct: 151 HSKRVIHRDIKPENLLLGSAGE----LKIADFGWSVHAPSSRRDDLCGTLDYLPPEMIEG 206
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +   EK D++  G++  + L GK P +A+
Sbjct: 207 RMHDEKVDLWSLGVLCYEFLVGKPPFEAN 235

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 24/183 (13%)
Query: 712 VVKKIID---VNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL 768
           V  KIID   +N  +    + +V +  K++ HPNIV+L  V  +EK  YLV EY  G E+
Sbjct: 43  VAVKIIDKTQLNPTSLQKLFREV-RIMKILNHPNIVKLFEVIETEKTLYLVMEYASGGEV 101
Query: 769 SEVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRL 824
            + L    R    E R K    I  A+++ H      +V  D+    +++DG     + +
Sbjct: 102 FDYLVAHGRMKEKEARAKFR-QIVSAVQYCH---QKYIVHRDLKAENLLLDGD----MNI 153
Query: 825 SVPGLAYCTDSKSIN-------SSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTGKSP 876
            +    +  +    N       S  Y APE  + K     + D++  G+IL  L++G  P
Sbjct: 154 KIADFGFSNEFTVGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 213
Query: 877 ADA 879
            D 
Sbjct: 214 FDG 216

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 9/193 (4%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWP--DVSQFGKLIMHPNIVRLHGV 749
           GK   S   +       ++F  K II+   ++   F      ++  + + HPNIVRLH  
Sbjct: 15  GKGAFSVVRRCVHKTTGLEFAAK-IINTKKLSARDFQKLEREARICRKLQHPNIVRLHDS 73
Query: 750 CRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSP 809
            + E   YLV++ + G EL E +    +      +  I + L  + +  S  +V  ++ P
Sbjct: 74  IQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKP 133
Query: 810 GKVIVDGKDE-PHLRLSVPGLAY-CTDSKSINSSA----YVAPETKESKDITEKGDIYGF 863
             +++  K +   ++L+  GLA    DS++ +  A    Y++PE  +    ++  DI+  
Sbjct: 134 ENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWAC 193
Query: 864 GLILIDLLTGKSP 876
           G+IL  LL G  P
Sbjct: 194 GVILYILLVGYPP 206

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 125/281 (44%), Gaps = 65/281 (23%)
Query: 57  CQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIXXXXXXXXXXX 116
            +N T++N +ELS+  IS    S++  L  ++ +N SSNQ+                   
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQV------------------- 163
Query: 117 XXXXXXTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSI 176
                 T   P+ +L+ LE LD+S+N +S      +   + L+ L    N +    PL I
Sbjct: 164 ------TDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI 215
Query: 177 SNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLV 236
             +T+L   +L  NQL     ++IG L                       LT+L  LDL 
Sbjct: 216 --LTNLDELSLNGNQL-----KDIGTL---------------------ASLTNLTDLDLA 247
Query: 237 YNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEV 296
            N ++   P     L+ L  L L  N+++   P  + GL +L + +L++N L    P  +
Sbjct: 248 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I 301
Query: 297 IQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS 337
             L+NL  L L+ NN +   P  ++S+ KLQ L  ++N+ S
Sbjct: 302 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 340

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 111/256 (43%), Gaps = 41/256 (16%)
Query: 348 NNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNR 407
           NNLT I+ S N LT   P  L +   L  +++ +N +    P  L+   +L  + L NN+
Sbjct: 63  NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 408 LSGELSSEFTRLPLVYFLDISGN---DLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSF 464
           ++         L  +  L++S N   D+S   G     +TSLQ LN + N  +   P + 
Sbjct: 119 ITD--IDPLKNLTNLNRLELSSNTISDISALSG-----LTSLQQLNFSSNQVTDLKPLA- 170
Query: 465 GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIP-------EELS----- 512
               LE LD+S N+ S        +L+ L  L  + N++    P       +ELS     
Sbjct: 171 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 513 --------SCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVAS 564
                   S   L  LDL+NNQ+S   P  LS +  L +L L  NQ+S   P  L  + +
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 284
Query: 565 LVQVNISHNHFHGSLP 580
           L  + ++ N      P
Sbjct: 285 LTNLELNENQLEDISP 300

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 23/219 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKI--IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV 749
           GK       K +      ++ VK I         TS+   +V    KL  HPNI++L  +
Sbjct: 31  GKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLD-HPNIMKLFEI 89
Query: 750 CRSEKAAYLVYEYIEGKEL-SEVLRNLSWERRRKVAI--GIAKALRFLHFHCSPSVVAGD 806
                + Y+V E   G EL  E+++   +       I   +   + ++H H   ++V  D
Sbjct: 90  LEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRD 146
Query: 807 VSPGKVIVDGKDEP-HLRLSVPGLAYCTDSKS-----INSSAYVAPETKESKDITEKGDI 860
           + P  ++++ K++   +++   GL+ C    +     I ++ Y+APE        EK D+
Sbjct: 147 LKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGT-YDEKCDV 205
Query: 861 YGFGLILIDLLTGKSPADADFGVHE----SIVEWARYCY 895
           +  G+IL  LL+G  P    +G +E      VE  +Y +
Sbjct: 206 WSAGVILYILLSGTPPF---YGKNEYDILKRVETGKYAF 241

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 18/186 (9%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWER-RRKVAIGIAKALRFL 794
           I HPNIV L  +  S    YL+ + + G EL +  V +    ER   ++   +  A+++L
Sbjct: 73  IKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYL 132
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTDSKSINSSA-----YVAPET 848
           H      +V  D+ P  ++    DE   + +S  GL+   D  S+ S+A     YVAPE 
Sbjct: 133 H---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEV 189
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVDP 906
              K  ++  D +  G+I   LL G  P   + D  + E I++ A Y +   + D   D 
Sbjct: 190 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILK-AEYEFDSPYWDDISDS 248
Query: 907 ---FIR 909
              FIR
Sbjct: 249 AKDFIR 254

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 18/186 (9%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWER-RRKVAIGIAKALRFL 794
           I HPNIV L  +  S    YL+ + + G EL +  V +    ER   ++   +  A+++L
Sbjct: 73  IKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYL 132
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTDSKSINSSA-----YVAPET 848
           H      +V  D+ P  ++    DE   + +S  GL+   D  S+ S+A     YVAPE 
Sbjct: 133 H---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEV 189
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVDP 906
              K  ++  D +  G+I   LL G  P   + D  + E I++ A Y +   + D   D 
Sbjct: 190 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILK-AEYEFDSPYWDDISDS 248
Query: 907 ---FIR 909
              FIR
Sbjct: 249 AKDFIR 254

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 18/186 (9%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWER-RRKVAIGIAKALRFL 794
           I HPNIV L  +  S    YL+ + + G EL +  V +    ER   ++   +  A+++L
Sbjct: 73  IKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYL 132
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTDSKSINSSA-----YVAPET 848
           H      +V  D+ P  ++    DE   + +S  GL+   D  S+ S+A     YVAPE 
Sbjct: 133 H---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEV 189
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVDP 906
              K  ++  D +  G+I   LL G  P   + D  + E I++ A Y +   + D   D 
Sbjct: 190 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILK-AEYEFDSPYWDDISDS 248
Query: 907 ---FIR 909
              FIR
Sbjct: 249 AKDFIR 254

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 168/429 (39%), Gaps = 90/429 (20%)
Query: 132 SRLEILDLSNNMLSGKIP---EEIGSFSGLKVLDLGGNV-LVGEIPLSISNITSLQIFTL 187
           S L  LDLS+N L    P   + IG    L + +   N  L  ++   +SN TS+Q  +L
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSN-TSIQNLSL 229
Query: 188 ASNQLIGSIPREIGQLR--NLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIP 245
           A+NQL+ +       L+  NL  + L YNNL          L SL +L L YNN+    P
Sbjct: 230 ANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSP 289
Query: 246 PSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEIL 305
            SF  LSNLRYL L +     S+        SL S    D++           L+ LE L
Sbjct: 290 RSFYGLSNLRYLSLKRAFTKQSV--------SLASHPNIDDF-------SFQWLKYLEYL 334
Query: 306 HLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIP 365
           ++  NN    IPS+             SN F+G +        +L  + LS  F +    
Sbjct: 335 NMDDNN----IPSTK------------SNTFTGLV--------SLKYLSLSKTFTS---- 366
Query: 366 ETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFL 425
                      L   +N     + +S      L  + L  N +S   +  F+ L  +  L
Sbjct: 367 -----------LQTLTNETFVSLAHS-----PLLTLNLTKNHISKIANGTFSWLGQLRIL 410
Query: 426 DISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPR 485
           D+  N++  ++  Q+W                       G   +  + LS N++      
Sbjct: 411 DLGLNEIEQKLSGQEWR----------------------GLRNIFEIYLSYNKYLQLSTS 448
Query: 486 SFGRLSELMQLKISRNKLFG-DI-PEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQ 543
           SF  +  L +L + R  L   DI P      + L  LDLSNN ++      L  +  L  
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEI 508
Query: 544 LDLSENQLS 552
           LD   N L+
Sbjct: 509 LDFQHNNLA 517

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 85/186 (45%), Gaps = 10/186 (5%)
Query: 397 SLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLS--GRIGEQKWEMTSLQMLNLAGN 454
           S  R+ L++N+L       F +L  +  L +S N LS  G   +  +  TSL+ L+L+ N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 455 NFSGKLPDSFGSDQLENLDLSENRFSGTIPRS-FGRLSELMQLKISRNKL---FGDIPEE 510
                  +  G +QLE+LD   +        S F  L  L+ L IS       F  I   
Sbjct: 89  GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 511 LSSCKKLVSLDLSNNQLS-GHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVN 569
           LSS   L  L ++ N      +P   +E+  L  LDLS+ QL    P     ++SL  +N
Sbjct: 149 LSS---LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 570 ISHNHF 575
           +SHN+F
Sbjct: 206 MSHNNF 211

>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2 Length = 361

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           + ++HPNI+ LH V  +     L+ E + G EL + L    +LS E        I   + 
Sbjct: 70  RQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVN 129
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKD--EPHLRLSVPGLAYCTDS----KSI-NSSAYVA 845
           +LH   +  +   D+ P  +++  K+   PH++L   GLA+  +     K+I  +  +VA
Sbjct: 130 YLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVA 186
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    + +  + D++  G+I   LL+G SP
Sbjct: 187 PEIVNYEPLGLEADMWSIGVITYILLSGASP 217

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K+I   +++   F+ +     KL  HP +V+ +GVC  E   Y+V EYI    L   
Sbjct: 35  VAVKMIKEGSMSEDEFFQEAQTMMKL-SHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNY 93
Query: 772 LRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
           LR+    L   +  ++   + + + FL  H     +  D++    +VD   +  +++S  
Sbjct: 94  LRSHGKGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVD--RDLCVKVSDF 148
Query: 828 GLA-YCTDSKSINSSA------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPAD 878
           G+  Y  D + ++S        + APE       + K D++ FG+++ ++ + GK P D
Sbjct: 149 GMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYD 207

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFG--KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
           V  KIID   + +SS      +    K++ HPNIV+L  V  +EK  YLV EY  G E+ 
Sbjct: 42  VAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVF 101
Query: 770 EVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS 825
           + L    R    E R K    I  A+++ H      +V  D+    +++D      + + 
Sbjct: 102 DYLVAHGRMKEKEARAKFR-QIVSAVQYCH---QKFIVHRDLKAENLLLDAD----MNIK 153
Query: 826 VPGLAYCTDSKSIN-------SSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTGKSPA 877
           +    +  +    N       S  Y APE  + K     + D++  G+IL  L++G  P 
Sbjct: 154 IADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF 213
Query: 878 DA 879
           D 
Sbjct: 214 DG 215

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFG--KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
           V  KIID   + +SS      +    K++ HPNIV+L  V  +EK  YLV EY  G E+ 
Sbjct: 42  VAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVF 101
Query: 770 EVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS 825
           + L    R    E R K    I  A+++ H      +V  D+    +++D      + + 
Sbjct: 102 DYLVAHGRMKEKEARAKFR-QIVSAVQYCH---QKFIVHRDLKAENLLLDAD----MNIK 153
Query: 826 VPGLAYCTDSKSIN-------SSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTGKSPA 877
           +    +  +    N       S  Y APE  + K     + D++  G+IL  L++G  P 
Sbjct: 154 IADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF 213
Query: 878 DA 879
           D 
Sbjct: 214 DG 215

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 24/214 (11%)
Query: 679 IISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQ---FG 735
           II  T  E   S GK  +++ YK +      Q V  K I    +  S     V +   + 
Sbjct: 12  IIRETLGEG--SFGKVKLATHYKTQ------QKVALKFISRQLLKKSDMHMRVEREISYL 63
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL--RNLSWERRRKVAIGIAKALRF 793
           KL+ HP+I++L+ V  +     +V EY  G+    ++  + ++ +  R+    I  A+ +
Sbjct: 64  KLLRHPHIIKLYDVITTPTDIVMVIEYAGGELFDYIVEKKRMTEDEGRRFFQQIICAIEY 123
Query: 794 LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA----YVAPET 848
            H H    +V  D+ P  +++D  D  +++++  GL+   TD   + +S     Y APE 
Sbjct: 124 CHRH---KIVHRDLKPENLLLD--DNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEV 178
Query: 849 KESKDIT-EKGDIYGFGLILIDLLTGKSPADADF 881
              K     + D++  G++L  +L G+ P D +F
Sbjct: 179 INGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEF 212

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 60  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 110
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 111 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 168
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
            +  YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 225
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 226 TYLNPW 231

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 60  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 110
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 111 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 168
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
            +  YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 225
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 226 TYLNPW 231

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 59  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMX 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
            +  YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 225 TYLNPW 230

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 59  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
            +  YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 225 TYLNPW 230

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 59  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMX 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
            +  YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 225 TYLNPW 230

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 59  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
            +  YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 225 TYLNPW 230

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 59  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMX 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
            +  YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 225 TYLNPW 230

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 58  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 108
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 109 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 166
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
            +  YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 167 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 223
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 224 TYLNPW 229

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 59  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
            +  YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 225 TYLNPW 230

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 60  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 110
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 111 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMX 168
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
            +  YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 225
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 226 TYLNPW 231

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 59  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
            +  YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 225 TYLNPW 230

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 60  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 110
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 111 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 168
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
            +  YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 225
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 226 TYLNPW 231

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 59  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
            +  YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 225 TYLNPW 230

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 59  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
            +  YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 225 TYLNPW 230

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 59  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
            +  YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 225 TYLNPW 230

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 60  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 110
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 111 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 168
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
            +  YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 225
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 226 TYLNPW 231

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 60  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 110
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 111 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 168
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
            +  YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 225
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 226 TYLNPW 231

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 59  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN--- 839
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMX 167
Query: 840 -SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
            +  YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSXQEYSDWKEKK 224
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 225 TYLNPW 230

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 10/148 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 69  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITELANALSYC 128
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S   +       Y+ PE  E 
Sbjct: 129 HSKRVIHRDIKPENLLLGSNGE----LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 184
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADA 879
           +   EK D++  G++  + L G  P +A
Sbjct: 185 RMHDEKVDLWSLGVLCYEFLVGMPPFEA 212

>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With Bound Inhibitor Fragment Length = 293

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           K I HPN++ LH V  ++    L+ E + G EL + L    +L+ E   +    I   + 
Sbjct: 68  KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 127
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
           +LH   S  +   D+ P  +++  ++ P  R+ +   GLA+  D          +  +VA
Sbjct: 128 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 184
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    + +  + D++  G+I   LL+G SP
Sbjct: 185 PEIVNYEPLGLEADMWSIGVITYILLSGASP 215

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 59  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 109
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSINSSA 842
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 110 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 167
Query: 843 ----YVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
               YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 168 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 224
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 225 TYLNPW 230

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 32/186 (17%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRF 793
           K++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF
Sbjct: 60  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRF 110
Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSINSSA 842
            H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N   
Sbjct: 111 FHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMC 168
Query: 843 ----YVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
               YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +    
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKK 225
Query: 898 CHLDTW 903
            +L+ W
Sbjct: 226 TYLNPW 231

>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp Length = 295

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           K I HPN++ LH V  ++    L+ E + G EL + L    +L+ E   +    I   + 
Sbjct: 69  KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
           +LH   S  +   D+ P  +++  ++ P  R+ +   GLA+  D          +  +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    + +  + D++  G+I   LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216

>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277 Length = 277

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           K I HPN++ LH V  ++    L+ E + G EL + L    +L+ E   +    I   + 
Sbjct: 69  KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
           +LH   S  +   D+ P  +++  ++ P  R+ +   GLA+  D          +  +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    + +  + D++  G+I   LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216

>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase In Complex With Amppnp And Mg2+ Length = 295

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           K I HPN++ LH V  ++    L+ E + G EL + L    +L+ E   +    I   + 
Sbjct: 69  KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
           +LH   S  +   D+ P  +++  ++ P  R+ +   GLA+  D          +  +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    + +  + D++  G+I   LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 98/207 (47%), Gaps = 31/207 (14%)
Query: 131 LSRLEILDLSNNMLSGKIPEEIGSFSGL---KVLDLGGNVLVGEIPLSISNITSLQIFTL 187
           L  LEIL LS N +      EIG+F+GL     L+L  N L      +   ++ L+   L
Sbjct: 87  LRHLEILQLSRNHIRTI---EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143
Query: 188 ASNQLIGSIPR------------EIGQLRNLKWIYLG---------YNNLSGEIPKEIGD 226
            +N  I SIP             ++G+L+ L +I  G         Y NL+    +EI +
Sbjct: 144 RNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202
Query: 227 LT---SLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDL 283
           LT    L+ LDL  N+L+   P SF  L +L+ L++ Q+++      +   L+SLV  +L
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262
Query: 284 SDNYLSGEIPEEVIQLQNLEILHLFSN 310
           + N L+    +    L +LE +HL  N
Sbjct: 263 AHNNLTLLPHDLFTPLHHLERIHLHHN 289

>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic Domain Of Death-Associated Protein Kinase With Atp Analogue And Mn. Length = 294

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           K I HPN++ LH V  ++    L+ E + G EL + L    +L+ E   +    I   + 
Sbjct: 68  KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 127
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
           +LH   S  +   D+ P  +++  ++ P  R+ +   GLA+  D          +  +VA
Sbjct: 128 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 184
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    + +  + D++  G+I   LL+G SP
Sbjct: 185 PEIVNYEPLGLEADMWSIGVITYILLSGASP 215

>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In Complex With A Ruthenium Octasporine Ligand (Osv) Length = 285

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           K I HPN++ LH V  ++    L+ E + G EL + L    +L+ E   +    I   + 
Sbjct: 69  KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
           +LH   S  +   D+ P  +++  ++ P  R+ +   GLA+  D          +  +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    + +  + D++  G+I   LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216

>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304 Length = 326

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           K I HPN++ LH V  ++    L+ E + G EL + L    +L+ E   +    I   + 
Sbjct: 69  KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
           +LH   S  +   D+ P  +++  ++ P  R+ +   GLA+  D          +  +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    + +  + D++  G+I   LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216

>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The Death Associated Protein Kinase Catalytic Domain With Amppnp Length = 295

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           K I HPN++ LH V  ++    L+ E + G EL + L    +L+ E   +    I   + 
Sbjct: 69  KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
           +LH   S  +   D+ P  +++  ++ P  R+ +   GLA+  D          +  +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    + +  + D++  G+I   LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 30/186 (16%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQ--FGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
           V  KIID   + +SS      +    K++ HPNIV+L  V  +EK  YLV EY  G E+ 
Sbjct: 42  VAVKIIDKTQLNSSSLQKLFREVRIXKVLNHPNIVKLFEVIETEKTLYLVXEYASGGEVF 101
Query: 770 EVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS 825
           + L    R    E R K    I  A+++ H      +V  D+    +++D   + +++++
Sbjct: 102 DYLVAHGRXKEKEARAKFR-QIVSAVQYCH---QKFIVHRDLKAENLLLDA--DXNIKIA 155
Query: 826 VPGL-----------AYCTDSKSINSSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTG 873
             G            A+C       +  Y APE  + K     + D++  G+IL  L++G
Sbjct: 156 DFGFSNEFTFGNKLDAFC------GAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSG 209
Query: 874 KSPADA 879
             P D 
Sbjct: 210 SLPFDG 215

>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In Complex With Small Molecular Inhibitors Length = 278

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           K I HPN++ LH V  ++    L+ E + G EL + L    +L+ E   +    I   + 
Sbjct: 69  KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
           +LH   S  +   D+ P  +++  ++ P  R+ +   GLA+  D          +  +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    + +  + D++  G+I   LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           K I HPN++ LH V  ++    L+ E + G EL + L    +L+ E   +    I   + 
Sbjct: 69  KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
           +LH   S  +   D+ P  +++  ++ P  R+ +   GLA+  D          +  +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    + +  + D++  G+I   LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           K I HPN++ LH V  ++    L+ E + G EL + L    +L+ E   +    I   + 
Sbjct: 69  KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
           +LH   S  +   D+ P  +++  ++ P  R+ +   GLA+  D          +  +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    + +  + D++  G+I   LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFG--KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
           V  +IID   + +SS      +    K++ HPNIV+L  V  +EK  YLV EY  G E+ 
Sbjct: 42  VAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVF 101
Query: 770 EVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS 825
           + L    R    E R K    I  A+++ H      +V  D+    +++D      + + 
Sbjct: 102 DYLVAHGRMKEKEARAKFR-QIVSAVQYCH---QKFIVHRDLKAENLLLDAD----MNIK 153
Query: 826 VPGLAYCTD-------SKSINSSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTGKSPA 877
           +    +  +        +   S  Y APE  + K     + D++  G+IL  L++G  P 
Sbjct: 154 IADFGFSNEFTFGNKLDEFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF 213
Query: 878 DA 879
           D 
Sbjct: 214 DG 215

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 10/148 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+RL+G        YL+ EY     +   L+ LS    ++ A  I +    L + 
Sbjct: 69  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITELANALSYC 128
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
            S  V+  D+ P  +++    E    L +    +   + S           Y+ PE  E 
Sbjct: 129 HSKRVIHRDIKPENLLLGSNGE----LKIADFGWSVHAPSSRRDTLCGTLDYLPPEMIEG 184
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADA 879
           +   EK D++  G++  + L G  P +A
Sbjct: 185 RMHDEKVDLWSLGVLCYEFLVGMPPFEA 212

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 152 IGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREI-GQLRNLKWIY 210
           +   + L  L L GN L          +T+L+   L  NQL  S+P  +  +L NL ++ 
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLN 139
Query: 211 LGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIP 269
           L +N L   +PK + D LT+L  LDL YN L       F  L+ L+ L LYQN+L  S+P
Sbjct: 140 LAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVP 197
Query: 270 KSILG-LKSLVSFDLSDN 286
             +   L SL    L DN
Sbjct: 198 DGVFDRLTSLQYIWLHDN 215

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 70/165 (42%), Gaps = 7/165 (4%)
Query: 419 LPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLD---LS 475
           LP V +L + GN L   I   K E+T+L  L L GN     LP+    D+L NL    L 
Sbjct: 62  LPNVRYLALGGNKLHD-ISALK-ELTNLTYLILTGNQLQS-LPNGV-FDKLTNLKELVLV 117
Query: 476 ENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASL 535
           EN+        F +L+ L  L ++ N+L             L  LDLS NQL        
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 536 SEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLP 580
            ++  L  L L +NQL         R+ SL  + +  N +  + P
Sbjct: 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 16/196 (8%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKI--IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV 749
           GK       K +      ++ VK I         TS+   +V    KL  HPNI++L  +
Sbjct: 31  GKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL-DHPNIMKLFEI 89
Query: 750 CRSEKAAYLVYEYIEGKEL-SEVLRNLSWERRRKVAI--GIAKALRFLHFHCSPSVVAGD 806
                + Y+V E   G EL  E+++   +       I   +   + ++H H   ++V  D
Sbjct: 90  LEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRD 146
Query: 807 VSPGKVIVDGKDEP-HLRLSVPGLAYCTDSKS-----INSSAYVAPETKESKDITEKGDI 860
           + P  ++++ K++   +++   GL+ C    +     I ++ Y+APE        EK D+
Sbjct: 147 LKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGT-YDEKCDV 205
Query: 861 YGFGLILIDLLTGKSP 876
           +  G+IL  LL+G  P
Sbjct: 206 WSAGVILYILLSGTPP 221

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFG--KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
           V  +IID   + +SS      +    K++ HPNIV+L  V  +EK  YLV EY  G E+ 
Sbjct: 42  VAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVF 101
Query: 770 EVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS 825
           + L    R    E R K    I  A+++ H      +V  D+    +++D      + + 
Sbjct: 102 DYLVAHGRMKEKEARAKFR-QIVSAVQYCH---QKFIVHRDLKAENLLLDAD----MNIK 153
Query: 826 VPGLAYCTDSKSIN-------SSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTGKSPA 877
           +    +  +    N       S  Y APE  + K     + D++  G+IL  L++G  P 
Sbjct: 154 IADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF 213
Query: 878 DA 879
           D 
Sbjct: 214 DG 215

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 30/186 (16%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFG--KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
           V  KIID   + +SS      +    K++ HPNIV+L  V  +EK  YLV EY  G E+ 
Sbjct: 42  VAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVF 101
Query: 770 EVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS 825
           + L    R    E R K    I  A+++ H      +V  D+    +++D   + +++++
Sbjct: 102 DYLVAHGRMKEKEARAKFR-QIVSAVQYCH---QKFIVHRDLKAENLLLDA--DMNIKIA 155
Query: 826 VPGL-----------AYCTDSKSINSSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTG 873
             G            A+C       +  Y APE  + K     + D++  G+IL  L++G
Sbjct: 156 DFGFSNEFTFGNKLDAFC------GAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSG 209
Query: 874 KSPADA 879
             P D 
Sbjct: 210 SLPFDG 215

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 16/196 (8%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKI--IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV 749
           GK       K +      ++ VK I         TS+   +V    KL  HPNI++L  +
Sbjct: 31  GKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL-DHPNIMKLFEI 89
Query: 750 CRSEKAAYLVYEYIEGKEL-SEVLRNLSWERRRKVAI--GIAKALRFLHFHCSPSVVAGD 806
                + Y+V E   G EL  E+++   +       I   +   + ++H H   ++V  D
Sbjct: 90  LEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRD 146
Query: 807 VSPGKVIVDGKDEP-HLRLSVPGLAYCTDSKS-----INSSAYVAPETKESKDITEKGDI 860
           + P  ++++ K++   +++   GL+ C    +     I ++ Y+APE        EK D+
Sbjct: 147 LKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGT-YDEKCDV 205
Query: 861 YGFGLILIDLLTGKSP 876
           +  G+IL  LL+G  P
Sbjct: 206 WSAGVILYILLSGTPP 221

>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302 Length = 302

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           K I HPN++ LH V  ++    L+ E + G EL + L    +L+ E   +    I   + 
Sbjct: 69  KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
           +LH   S  +   D+ P  +++  ++ P  R+ +   GLA+  D          +  +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    + +  + D++  G+I   LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 95/207 (45%), Gaps = 31/207 (14%)
Query: 131 LSRLEILDLSNNMLSGKIPEEIGSFSGL---KVLDLGGNVLVGEIPLSISNITSLQIFTL 187
           L  LEIL LS N++  KI  E+G+F+GL     L+L  N L      +   ++ L+   L
Sbjct: 58  LRHLEILQLSKNLVR-KI--EVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWL 114
Query: 188 ASNQLIGSIPR------------EIGQLRNLKWIY---------LGYNNLSGEIPKEIGD 226
            +N  I SIP             ++G+L+ L++I          L Y NL     K+I +
Sbjct: 115 RNNP-IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN 173
Query: 227 LTSL---NHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDL 283
           LT+L     L+L  N L    P SF  L++LR L+L   ++      +   LKSL   +L
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233
Query: 284 SDNYLSGEIPEEVIQLQNLEILHLFSN 310
           S N L     +    L  LE +HL  N
Sbjct: 234 SHNNLMSLPHDLFTPLHRLERVHLNHN 260

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 2/156 (1%)
Query: 373 SLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDL 432
           SL  L LF N L      +      LR + L+NN +    S  F R+P +  LD+     
Sbjct: 84  SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKR 143
Query: 433 SGRIGEQKWE-MTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLS 491
              I E  +E + +L+ LNL   N    +P+     +LE L+LS NR     P SF  L+
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNLKD-IPNLTALVRLEELELSGNRLDLIRPGSFQGLT 202
Query: 492 ELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQL 527
            L +L +   ++           K L  L+LS+N L
Sbjct: 203 SLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238

>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine Length = 295

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           K I HPN++ LH V  ++    L+ E + G EL + L    +L+ E   +    I   + 
Sbjct: 69  KEIQHPNVITLHEVYENKTDVILIGELVAGGELFDFLAEKESLTEEEATEFLKQILNGVY 128
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTD-----SKSINSSAYVA 845
           +LH   S  +   D+ P  +++  ++ P  R+ +   GLA+  D          +  +VA
Sbjct: 129 YLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 185
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    + +  + D++  G+I   LL+G SP
Sbjct: 186 PEIVNYEPLGLEADMWSIGVITYILLSGASP 216

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 65/281 (23%)
Query: 57  CQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIXXXXXXXXXXX 116
            +N T++N +ELS+  IS    S++  L  ++ ++ SSNQ+                   
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQV------------------- 163
Query: 117 XXXXXXTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSI 176
                 T   P+ +L+ LE LD+S+N +S      +   + L+ L    N +    PL I
Sbjct: 164 ------TDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI 215
Query: 177 SNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLV 236
             +T+L   +L  NQL     ++IG L                       LT+L  LDL 
Sbjct: 216 --LTNLDELSLNGNQL-----KDIGTL---------------------ASLTNLTDLDLA 247
Query: 237 YNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEV 296
            N ++   P     L+ L  L L  N+++   P  + GL +L + +L++N L    P  +
Sbjct: 248 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I 301
Query: 297 IQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS 337
             L+NL  L L+ NN +   P  ++S+ KLQ L  ++N+ S
Sbjct: 302 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 340

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 113/258 (43%), Gaps = 45/258 (17%)
Query: 348 NNLTVIDLSTNFLTGKIP--------------------ETLCDSGSLFKLILFSNSLEGK 387
           NNLT I+ S N LT   P                      L +  +L  L LF+N +   
Sbjct: 63  NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 122
Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQ 447
            P  L    +L R+ L +N +S    S  + L  +  L  S N ++    +    +T+L+
Sbjct: 123 DP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDL--KPLANLTTLE 176
Query: 448 MLNLAGNNFS-----GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNK 502
            L+++ N  S      KL +      LE+L  + N+ S   P   G L+ L +L ++ N+
Sbjct: 177 RLDISSNKVSDISVLAKLTN------LESLIATNNQISDITP--LGILTNLDELSLNGNQ 228
Query: 503 LFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRV 562
           L  DI   L+S   L  LDL+NNQ+S   P  LS +  L +L L  NQ+S   P  L  +
Sbjct: 229 L-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 282
Query: 563 ASLVQVNISHNHFHGSLP 580
            +L  + ++ N      P
Sbjct: 283 TALTNLELNENQLEDISP 300

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 95/207 (45%), Gaps = 31/207 (14%)
Query: 131 LSRLEILDLSNNMLSGKIPEEIGSFSGL---KVLDLGGNVLVGEIPLSISNITSLQIFTL 187
           L  LEIL LS N++  KI  E+G+F+GL     L+L  N L      +   ++ L+   L
Sbjct: 58  LRHLEILQLSKNLVR-KI--EVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWL 114
Query: 188 ASNQLIGSIPR------------EIGQLRNLKWIY---------LGYNNLSGEIPKEIGD 226
            +N  I SIP             ++G+L+ L++I          L Y NL     K+I +
Sbjct: 115 RNNP-IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN 173
Query: 227 LTSL---NHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDL 283
           LT+L     L+L  N L    P SF  L++LR L+L   ++      +   LKSL   +L
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233
Query: 284 SDNYLSGEIPEEVIQLQNLEILHLFSN 310
           S N L     +    L  LE +HL  N
Sbjct: 234 SHNNLMSLPHDLFTPLHRLERVHLNHN 260

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 2/156 (1%)
Query: 373 SLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDL 432
           SL  L LF N L      +      LR + L+NN +    S  F R+P +  LD+     
Sbjct: 84  SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKR 143
Query: 433 SGRIGEQKWE-MTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLS 491
              I E  +E + +L+ LNL   N    +P+     +LE L+LS NR     P SF  L+
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNLK-DIPNLTALVRLEELELSGNRLDLIRPGSFQGLT 202
Query: 492 ELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQL 527
            L +L +   ++           K L  L+LS+N L
Sbjct: 203 SLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 10/142 (7%)
Query: 128 IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL 187
           + SL+ L  LDL+NN +S   P  +   + L  L LG N +    PL  + +T+L    L
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL--AGLTALTNLEL 289
Query: 188 ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS 247
             NQL    P  I  L+NL ++ L +NN+S   P  +  LT L  L   YNN    +  S
Sbjct: 290 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDV-SS 343
Query: 248 FGNLSNLRYLFLYQNKLTGSIP 269
             NL+N+ +L    N+++   P
Sbjct: 344 LANLTNINWLSAGHNQISDLTP 365

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 38/211 (18%)
Query: 127 PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFT 186
           P+ +L+ LE LD+S+N +S      +   + L+ L    N +    PL I  +T+L   +
Sbjct: 167 PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELS 222
Query: 187 LASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP 246
           L  NQL     ++IG L                       LT+L  LDL  N ++   P 
Sbjct: 223 LNGNQL-----KDIGTL---------------------ASLTNLTDLDLANNQISNLAP- 255
Query: 247 SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILH 306
               L+ L  L L  N+++   P  + GL +L + +L++N L    P  +  L+NL  L 
Sbjct: 256 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 310
Query: 307 LFSNNFTGKIPSSLASMPKLQVLQLWSNQFS 337
           L+ NN +   P  ++S+ KLQ L  ++N+ S
Sbjct: 311 LYFNNISDISP--VSSLTKLQRLFFYNNKVS 339

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 116/260 (44%), Gaps = 50/260 (19%)
Query: 348 NNLTVIDLSTNFLTGKIP--------------------ETLCDSGSLFKLILFSNSLEGK 387
           NNLT I+ S N LT   P                      L +  +L  L LF+N +   
Sbjct: 63  NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 122
Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELS--SEFTRLPLVYFLDISGNDLSGRIGEQKWEMTS 445
            P  L    +L R+ L +N +S ++S  S  T L  + F    GN ++    +    +T+
Sbjct: 123 DP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLNF----GNQVTDL--KPLANLTT 173
Query: 446 LQMLNLAGNNFS-----GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISR 500
           L+ L+++ N  S      KL +      LE+L  + N+ S   P   G L+ L +L ++ 
Sbjct: 174 LERLDISSNKVSDISVLAKLTN------LESLIATNNQISDITP--LGILTNLDELSLNG 225
Query: 501 NKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLG 560
           N+L  DI   L+S   L  LDL+NNQ+S   P  LS +  L +L L  NQ+S   P  L 
Sbjct: 226 NQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 279
Query: 561 RVASLVQVNISHNHFHGSLP 580
            + +L  + ++ N      P
Sbjct: 280 GLTALTNLELNENQLEDISP 299

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 10/142 (7%)
Query: 128 IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL 187
           + SL+ L  LDL+NN +S   P  +   + L  L LG N +    PL  + +T+L    L
Sbjct: 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL--AGLTALTNLEL 294
Query: 188 ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS 247
             NQL    P  I  L+NL ++ L +NN+S   P  +  LT L  L   YNN    +  S
Sbjct: 295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDV-SS 348
Query: 248 FGNLSNLRYLFLYQNKLTGSIP 269
             NL+N+ +L    N+++   P
Sbjct: 349 LANLTNINWLSAGHNQISDLTP 370

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 101/214 (47%), Gaps = 44/214 (20%)
Query: 127 PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFT 186
           P+ +L+ LE LD+S+N                KV D+            ++ +T+L+   
Sbjct: 172 PLANLTTLERLDISSN----------------KVSDIS----------VLAKLTNLESLI 205
Query: 187 LASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIG---DLTSLNHLDLVYNNLTGQ 243
             +NQ+    P  +G L NL  + L  N L     K+IG    LT+L  LDL  N ++  
Sbjct: 206 ATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISNL 258
Query: 244 IPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLE 303
            P     L+ L  L L  N+++   P  + GL +L + +L++N L    P  +  L+NL 
Sbjct: 259 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312
Query: 304 ILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS 337
            L L+ NN +   P  ++S+ KLQ L  ++N+ S
Sbjct: 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 116/260 (44%), Gaps = 50/260 (19%)
Query: 348 NNLTVIDLSTNFLTGKIP--------------------ETLCDSGSLFKLILFSNSLEGK 387
           NNLT I+ S N LT   P                      L +  +L  L LF+N +   
Sbjct: 68  NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 127
Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELS--SEFTRLPLVYFLDISGNDLSGRIGEQKWEMTS 445
            P  L    +L R+ L +N +S ++S  S  T L  + F    GN ++    +    +T+
Sbjct: 128 DP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSF----GNQVTDL--KPLANLTT 178
Query: 446 LQMLNLAGNNFS-----GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISR 500
           L+ L+++ N  S      KL +      LE+L  + N+ S   P   G L+ L +L ++ 
Sbjct: 179 LERLDISSNKVSDISVLAKLTN------LESLIATNNQISDITP--LGILTNLDELSLNG 230
Query: 501 NKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLG 560
           N+L  DI   L+S   L  LDL+NNQ+S   P  LS +  L +L L  NQ+S   P  L 
Sbjct: 231 NQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 284
Query: 561 RVASLVQVNISHNHFHGSLP 580
            + +L  + ++ N      P
Sbjct: 285 GLTALTNLELNENQLEDISP 304

>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin E804 Length = 313

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALR-FL 794
           +L+ HPNIVRLH     E   YL+++ + G EL E +    +      +  I + L   L
Sbjct: 76  RLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVL 135
Query: 795 HFHCSPSVVAGDVSPGKVIVDGK-DEPHLRLSVPGLAYCTDSKS------INSSAYVAPE 847
           H H    VV  D+ P  +++  K     ++L+  GLA   + +         +  Y++PE
Sbjct: 136 HCH-QMGVVHRDLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPE 194
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
                   +  D++  G+IL  LL G  P
Sbjct: 195 VLRKDPYGKPVDLWACGVILYILLVGYPP 223

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 39  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 97
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 98  LRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 151
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP 
Sbjct: 152 DFGLSRLMTGDTFTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 211
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
               G+  S V      Y     D  ++            ++ E+M     C   +P+ R
Sbjct: 212 P---GIDPSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 254
Query: 938 PCASDVTKTLESCFRISS 955
           P  +++ +  E+ F+ SS
Sbjct: 255 PSFAEIHQAFETMFQESS 272

>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At Thr265 Length = 278

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 7/146 (4%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           I HPNI+ LH +  ++    L+ E + G EL + L         +    + + L  +H+ 
Sbjct: 72  IRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYL 131
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTDS----KSI-NSSAYVAPETKE 850
            S  +   D+ P  +++  K+ P+ R+ +   G+A+  ++    K+I  +  +VAPE   
Sbjct: 132 HSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVN 191
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
            + +  + D++  G+I   LL+G SP
Sbjct: 192 YEPLGLEADMWSIGVITYILLSGASP 217

>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A Tetracyclic Pyridone Inhibitor (pyridone 6) Length = 304

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 7/146 (4%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           I HPNI+ LH +  ++    L+ E + G EL + L         +    + + L  +H+ 
Sbjct: 86  IRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYL 145
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTDS----KSI-NSSAYVAPETKE 850
            S  +   D+ P  +++  K+ P+ R+ +   G+A+  ++    K+I  +  +VAPE   
Sbjct: 146 HSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVN 205
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
            + +  + D++  G+I   LL+G SP
Sbjct: 206 YEPLGLEADMWSIGVITYILLSGASP 231

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 24/183 (13%)
Query: 712 VVKKIID---VNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL 768
           V  KIID   +N  +    + +V +  K++ HPNIV+L  V  +EK  YL+ EY  G E+
Sbjct: 40  VAIKIIDKTQLNPTSLQKLFREV-RIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEV 98
Query: 769 SEVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRL 824
            + L    R    E R K    I  A+++ H      +V  D+    +++D      + +
Sbjct: 99  FDYLVAHGRMKEKEARSKFR-QIVSAVQYCH---QKRIVHRDLKAENLLLDA----DMNI 150
Query: 825 SVPGLAYCTD-------SKSINSSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTGKSP 876
            +    +  +            S  Y APE  + K     + D++  G+IL  L++G  P
Sbjct: 151 KIADFGFSNEFTVGGKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 210
Query: 877 ADA 879
            D 
Sbjct: 211 FDG 213

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 32/187 (17%)
Query: 712 VVKKIID---VNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL 768
           V  KIID   +N  +    + +V +  K++ HPNIV+L  V  +EK  YL+ EY  G E+
Sbjct: 43  VAIKIIDKTQLNPTSLQKLFREV-RIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEV 101
Query: 769 SEVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRL 824
            + L    R    E R K    I  A+++ H      +V  D+    +++D   + ++++
Sbjct: 102 FDYLVAHGRMKEKEARSKFR-QIVSAVQYCH---QKRIVHRDLKAENLLLDA--DMNIKI 155
Query: 825 SVPGL-----------AYCTDSKSINSSAYVAPETKESKDIT-EKGDIYGFGLILIDLLT 872
           +  G            A+C       +  Y APE  + K     + D++  G+IL  L++
Sbjct: 156 ADFGFSNEFTVGGKLDAFC------GAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVS 209
Query: 873 GKSPADA 879
           G  P D 
Sbjct: 210 GSLPFDG 216

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 128/312 (41%), Gaps = 32/312 (10%)
Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIF 185
           VP G  +   +LDL  N +     +E  SF  L+ L+L  N++    P + +N+ +L+  
Sbjct: 26  VPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTL 85
Query: 186 TLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIP 245
            L SN+L              K I LG              L++L  LD+  N +   + 
Sbjct: 86  GLRSNRL--------------KLIPLGV----------FTGLSNLTKLDISENKIVILLD 121
Query: 246 PSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEIL 305
             F +L NL+ L +  N L     ++  GL SL    L    L+    E +  L  L +L
Sbjct: 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181
Query: 306 HLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIP 365
            L   N       S   + +L+VL++    +   +  N     NLT + ++   LT  +P
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VP 240
Query: 366 ETLCDSGSLFKLILFS----NSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPL 421
                     + +  S    +++EG + + L     L+ ++L   +L+      F  L  
Sbjct: 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHEL---LRLQEIQLVGGQLAVVEPYAFRGLNY 297
Query: 422 VYFLDISGNDLS 433
           +  L++SGN L+
Sbjct: 298 LRVLNVSGNQLT 309

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 32/185 (17%)
Query: 737 LIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--ALRFL 794
           ++ H N+V+ +G  R     YL  EY  G EL +         R +  IG+ +  A RF 
Sbjct: 61  MLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD---------RIEPDIGMPEPDAQRFF 111
Query: 795 H-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSIN---- 839
           H       +     +   D+ P  +++D +D  +L++S  GLA    Y    + +N    
Sbjct: 112 HQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMCG 169
Query: 840 SSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDC 898
           +  YVAPE  + ++   E  D++  G++L  +L G+ P D      +S  E++ +     
Sbjct: 170 TLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKKT 226
Query: 899 HLDTW 903
           +L+ W
Sbjct: 227 YLNPW 231

>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase 3 (Dapk3) In Complex With A Beta-Carboline Ligand Length = 283

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 7/146 (4%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           I HPNI+ LH +  ++    L+ E + G EL + L         +    + + L  +H+ 
Sbjct: 65  IRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYL 124
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTDS----KSI-NSSAYVAPETKE 850
            S  +   D+ P  +++  K+ P+ R+ +   G+A+  ++    K+I  +  +VAPE   
Sbjct: 125 HSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVN 184
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
            + +  + D++  G+I   LL+G SP
Sbjct: 185 YEPLGLEADMWSIGVITYILLSGASP 210

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 39  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDY 97
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 98  LRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 151
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP 
Sbjct: 152 DFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 211
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
               G+  S V      Y     D  ++            ++ E+M     C   +P+ R
Sbjct: 212 P---GIDPSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 254
Query: 938 PCASDVTKTLESCFRISS 955
           P  +++ +  E+ F+ SS
Sbjct: 255 PSFAEIHQAFETMFQESS 272

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 103/235 (43%), Gaps = 32/235 (13%)
Query: 677 DEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVS---- 732
           D+++     E     GK   S   +  +     QF VK I+DV   T+S   P +S    
Sbjct: 18  DDVLFEDVYELCEVIGKGAFSVVRRCINRETGQQFAVK-IVDVAKFTSS---PGLSTEDL 73
Query: 733 ----QFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS-EVLRNLSWERRRKVAIG- 786
                   ++ HP+IV L     S+   Y+V+E+++G +L  E+++          A+  
Sbjct: 74  KREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVAS 133
Query: 787 -----IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAY------CTD 834
                I +ALR+ H     +++  DV P  V++  K+    ++L   G+A          
Sbjct: 134 HYMRQILEALRYCH---DNNIIHRDVKPENVLLASKENSAPVKLGDFGVAIQLGESGLVA 190
Query: 835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVE 889
              + +  ++APE  + +   +  D++G G+IL  LL+G  P    +G  E + E
Sbjct: 191 GGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPF---YGTKERLFE 242

>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX Length = 361

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 105/239 (43%), Gaps = 32/239 (13%)
Query: 673 SLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVS 732
           S+  D+++     E     GK   S   +  +     QF VK I+DV   T+S   P +S
Sbjct: 16  SMADDDVLFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVK-IVDVAKFTSS---PGLS 71
Query: 733 --------QFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS-EVLRNLSWERRRKV 783
                       ++ HP+IV L     S+   Y+V+E+++G +L  E+++          
Sbjct: 72  TEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSE 131
Query: 784 AIG------IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAY----- 831
           A+       I +ALR+ H     +++  DV P  V++  K+    ++L   G+A      
Sbjct: 132 AVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGES 188
Query: 832 -CTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVE 889
                  + +  ++APE  + +   +  D++G G+IL  LL+G  P    +G  E + E
Sbjct: 189 GLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPF---YGTKERLFE 244

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 39  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 97
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 98  LRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 151
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP 
Sbjct: 152 DFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 211
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
               G+  S V      Y     D  ++            ++ E+M     C   +P+ R
Sbjct: 212 P---GIDPSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 254
Query: 938 PCASDVTKTLESCFRISS 955
           P  +++ +  E+ F+ SS
Sbjct: 255 PSFAEIHQAFETMFQESS 272

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 95/238 (39%), Gaps = 39/238 (16%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRR-------KVAIGIA 788
           K + HPN+++ +     +    +V E  +  +LS ++++   ++R        K  + + 
Sbjct: 87  KQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLC 146
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS------INSSA 842
            AL  +H   S  V+  D+ P  V +       ++L   GL     SK+      + +  
Sbjct: 147 SALEHMH---SRRVMHRDIKPANVFITATGV--VKLGDLGLGRFFSSKTTAAHSLVGTPY 201
Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDT 902
           Y++PE         K DI+  G +L ++   +SP   D              YS C    
Sbjct: 202 YMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD----------KMNLYSLCKKIE 251
Query: 903 WVD--PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISSCVS 958
             D  P    H S    E+ +++N+   C   DP  RP   DVT   +   R+ +C +
Sbjct: 252 QCDYPPLPSDHYSE---ELRQLVNM---CINPDPEKRP---DVTYVYDVAKRMHACTA 300

>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent Protein Kinase Ii Delta Isoform 1, Camkd Length = 301

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLH 795
           +L+ HPNIVRLH     E   YLV++ + G EL E +    +      +  I + L  ++
Sbjct: 58  RLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILESVN 117
Query: 796 FHCSPS-VVAGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTDSKS------INSSAYVAPE 847
            HC  + +V  D+ P  +++  K +   ++L+  GLA               +  Y++PE
Sbjct: 118 -HCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPE 176
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
                   +  D++  G+IL  LL G  P
Sbjct: 177 VLRKDPYGKPVDMWACGVILYILLVGYPP 205

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y+V EY+    L + 
Sbjct: 60  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNLLDY 118
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPH-LRLS 825
           LR  + E    V     A  I+ A+ +L      + +  D++    +V    E H ++++
Sbjct: 119 LRECNREEVTAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHVVKVA 172
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP
Sbjct: 173 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSP 231

>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent Protein Kinase Ii Gamma Length = 336

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 732 SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWERRRKVAIG-IA 788
           ++  +L+ HPNIVRLH     E   YLV++ + G EL E  V R    E      I  I 
Sbjct: 81  ARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQIL 140
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTDSKS------INSS 841
           +++  +H H    +V  D+ P  +++  K +   ++L+  GLA     +         + 
Sbjct: 141 ESVNHIHQH---DIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTP 197
Query: 842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
            Y++PE        +  DI+  G+IL  LL G  P
Sbjct: 198 GYLSPEVLRKDPYGKPVDIWACGVILYILLVGYPP 232

>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1 In With Amp-Pnp Length = 325

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 13/147 (8%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
           HPNIV+LH V   +   +LV E + G EL E +   ++ S      +   +  A+  +H 
Sbjct: 65  HPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKKKHFSETEASYIMRKLVSAVSHMH- 123
Query: 797 HCSPSVVAGDVSPGKVI-VDGKDEPHLRLSVPGLAYCT--DSKSINSSA----YVAPETK 849
                VV  D+ P  ++  D  D   +++   G A     D++ + +      Y APE  
Sbjct: 124 --DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELL 181
Query: 850 ESKDITEKGDIYGFGLILIDLLTGKSP 876
                 E  D++  G+IL  +L+G+ P
Sbjct: 182 NQNGYDESCDLWSLGVILYTMLSGQVP 208

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 42  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDY 100
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 101 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 154
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP 
Sbjct: 155 DFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 214
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
               G+  S V      Y     D  ++            ++ E+M     C   +P+ R
Sbjct: 215 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 257
Query: 938 PCASDVTKTLESCFRISS 955
           P  +++ +  E+ F+ SS
Sbjct: 258 PSFAEIHQAFETMFQESS 275

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 99/214 (46%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S++   R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 39  GEGSFSTTVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 97
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 98  TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 154
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 155 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 212
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            D++  G I+  L+ G  P  A  ++ + + I++
Sbjct: 213 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 246

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 90/221 (40%), Gaps = 40/221 (18%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL----RNLSWERRRKVAIGIAKAL 791
           KL  HP+I++L+ V  +    ++V EY+ G EL + +    R    E RR     I  A+
Sbjct: 66  KLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQ-QILSAV 124
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLA-YCTDSK----SINSSAYV 844
            + H H    VV  D+ P  V++D     H+   +   GL+   +D +    S  S  Y 
Sbjct: 125 DYCHRHM---VVHRDLKPENVLLDA----HMNAKIADFGLSNMMSDGEFLRDSCGSPNYA 177
Query: 845 APETKESKDIT-EKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTW 903
           APE    +     + DI+  G+IL  LL G  P D                  D H+ T 
Sbjct: 178 APEVISGRLYAGPEVDIWSCGVILYALLCGTLPFD------------------DEHVPTL 219
Query: 904 VDPFIRGHVSSIQNEI-VEIMNLALHCTAGDPTARPCASDV 943
               IRG V  I   +   +  L +H    DP  R    D+
Sbjct: 220 FKK-IRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDI 259

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 90/221 (40%), Gaps = 40/221 (18%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL----RNLSWERRRKVAIGIAKAL 791
           KL  HP+I++L+ V  +    ++V EY+ G EL + +    R    E RR     I  A+
Sbjct: 66  KLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQ-QILSAV 124
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLA-YCTDSK----SINSSAYV 844
            + H H    VV  D+ P  V++D     H+   +   GL+   +D +    S  S  Y 
Sbjct: 125 DYCHRHM---VVHRDLKPENVLLDA----HMNAKIADFGLSNMMSDGEFLRTSCGSPNYA 177
Query: 845 APETKESKDIT-EKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTW 903
           APE    +     + DI+  G+IL  LL G  P D                  D H+ T 
Sbjct: 178 APEVISGRLYAGPEVDIWSCGVILYALLCGTLPFD------------------DEHVPTL 219
Query: 904 VDPFIRGHVSSIQNEI-VEIMNLALHCTAGDPTARPCASDV 943
               IRG V  I   +   +  L +H    DP  R    D+
Sbjct: 220 FKK-IRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDI 259

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 42  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 100
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 101 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 154
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP 
Sbjct: 155 DFGLSRLMTGDTYTAPAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 214
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
               G+  S V      Y     D  ++            ++ E+M     C   +P+ R
Sbjct: 215 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 257
Query: 938 PCASDVTKTLESCFRISS 955
           P  +++ +  E+ F+ SS
Sbjct: 258 PSFAEIHQAFETMFQESS 275

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 43  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 101
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 102 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 155
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP 
Sbjct: 156 DFGLSRLMTGDTYTAPAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 215
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
               G+  S V      Y     D  ++            ++ E+M     C   +P+ R
Sbjct: 216 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 258
Query: 938 PCASDVTKTLESCFRISS 955
           P  +++ +  E+ F+ SS
Sbjct: 259 PSFAEIHQAFETMFQESS 276

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 18/156 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE-VLRN--LSWERRRKVAIGIAKALR 792
           KL  HP+I++L+ V  +    ++V EY+ G EL + + +N  L  +  R++   I   + 
Sbjct: 71  KLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVD 130
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSK----SINSSAYVA 845
           + H H    VV  D+ P  V++D     H+   +         +D +    S  S  Y A
Sbjct: 131 YCHRHM---VVHRDLKPENVLLDA----HMNAKIADFGLSNMMSDGEFLRXSCGSPNYAA 183
Query: 846 PETKESKDIT-EKGDIYGFGLILIDLLTGKSPADAD 880
           PE    +     + DI+  G+IL  LL G  P D D
Sbjct: 184 PEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDD 219

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 54  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 112
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 113 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 166
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP 
Sbjct: 167 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 226
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
               G+  S V      Y     D  ++            ++ E+M     C   +P+ R
Sbjct: 227 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 269
Query: 938 PCASDVTKTLESCFRISS 955
           P  +++ +  E+ F+ SS
Sbjct: 270 PSFAEIHQAFETMFQESS 287

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 46  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 104
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 105 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 158
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP 
Sbjct: 159 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 218
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
               G+  S V      Y     D  ++            ++ E+M     C   +P+ R
Sbjct: 219 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 261
Query: 938 PCASDVTKTLESCFRISS 955
           P  +++ +  E+ F+ SS
Sbjct: 262 PSFAEIHQAFETMFQESS 279

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 43  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 101
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 102 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 155
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP 
Sbjct: 156 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 215
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
               G+  S V      Y     D  ++            ++ E+M     C   +P+ R
Sbjct: 216 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 258
Query: 938 PCASDVTKTLESCFRISS 955
           P  +++ +  E+ F+ SS
Sbjct: 259 PSFAEIHQAFETMFQESS 276

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 43  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 101
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 102 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 155
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP 
Sbjct: 156 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 215
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
               G+  S V      Y     D  ++            ++ E+M     C   +P+ R
Sbjct: 216 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 258
Query: 938 PCASDVTKTLESCFRISS 955
           P  +++ +  E+ F+ SS
Sbjct: 259 PSFAEIHQAFETMFQESS 276

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 18/186 (9%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRR---KVAIGIAKALRFL 794
           I HPNIV L  +  S    YL+ + + G EL + +    +   R   ++   +  A+++L
Sbjct: 73  IKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYL 132
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEP-HLRLSVPGLAYCTDSKSINSSA-----YVAPET 848
           H      +V  D+ P  ++    DE   + +S  GL+   D  S+ S+A     YVAPE 
Sbjct: 133 H---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEV 189
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVD- 905
              K  ++  D +  G+I   LL G  P   + D  + E I++ A Y +   + D   D 
Sbjct: 190 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILK-AEYEFDSPYWDDISDS 248
Query: 906 --PFIR 909
              FIR
Sbjct: 249 AKDFIR 254

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 41  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDY 99
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 100 LRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 153
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP 
Sbjct: 154 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 213
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
               G+  S V      Y     D  ++            ++ E+M     C   +P+ R
Sbjct: 214 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 256
Query: 938 PCASDVTKTLESCFRISS 955
           P  +++ +  E+ F+ SS
Sbjct: 257 PSFAEIHQAFETMFQESS 274

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 41  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDY 99
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 100 LRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 153
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP 
Sbjct: 154 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 213
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
               G+  S V      Y     D  ++            ++ E+M     C   +P+ R
Sbjct: 214 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 256
Query: 938 PCASDVTKTLESCFRISS 955
           P  +++ +  E+ F+ SS
Sbjct: 257 PSFAEIHQAFETMFQESS 274

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 715 KIIDVNTITTSS----FWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE 770
           KII  +++TT+S       +V+   K + HPNI++L+     ++  YLV E   G EL +
Sbjct: 35  KIIKKSSVTTTSNSGALLDEVAVL-KQLDHPNIMKLYEFFEDKRNYYLVMEVYRGGELFD 93
Query: 771 --VLRNLSWERRRKVAIG-IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLSV 826
             +LR    E    V +  +     +LH H   ++V  D+ P  ++++ K    L ++  
Sbjct: 94  EIILRQKFSEVDAAVIMKQVLSGTTYLHKH---NIVHRDLKPENLLLESKSRDALIKIVD 150
Query: 827 PGLAYCTD-----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
            GL+   +      + + ++ Y+APE    K   EK D++  G+IL  LL G  P
Sbjct: 151 FGLSAHFEVGGKMKERLGTAYYIAPEVLRKK-YDEKCDVWSCGVILYILLCGYPP 204

>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Mgatp) Length = 271

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 63/260 (24%), Positives = 117/260 (45%), Gaps = 31/260 (11%)
Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAY-- 757
           +K R   ND+   V K+ D +T  +  F  +  +  ++  HPN++ + G C+S  A +  
Sbjct: 27  WKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRL-RIFSHPNVLPVLGACQSPPAPHPT 85
Query: 758 LVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKV 812
           L+  ++    L  VL       +   +  K A+ +A+ + FLH    P +    ++   V
Sbjct: 86  LITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH-TLEPLIPRHALNSRSV 144
Query: 813 IVDGKDEPHLRLSVPGLAYCTDSKS-INSSAYVAPET--KESKDITEK-GDIYGFGLILI 868
           ++D  ++   R+S+  + +   S   + + A+VAPE   K+ +D   +  D++ F ++L 
Sbjct: 145 MID--EDMTARISMADVKFSFQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLW 202
Query: 869 DLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALH 928
           +L+T + P  AD    E  ++ A        L   + P I  HVS       ++M +   
Sbjct: 203 ELVTREVPF-ADLSNMEIGMKVALE-----GLRPTIPPGISPHVS-------KLMKI--- 246
Query: 929 CTAGDPTARPCASDVTKTLE 948
           C   DP  RP    +   LE
Sbjct: 247 CMNEDPAKRPKFDMIVPILE 266

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 41  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 99
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 100 LRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 153
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP 
Sbjct: 154 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 213
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
               G+  S V      Y     D  ++            ++ E+M     C   +P+ R
Sbjct: 214 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 256
Query: 938 PCASDVTKTLESCFRISS 955
           P  +++ +  E+ F+ SS
Sbjct: 257 PSFAEIHQAFETMFQESS 274

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 41  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 99
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 100 LRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 153
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP 
Sbjct: 154 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 213
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
               G+  S V      Y     D  ++            ++ E+M     C   +P+ R
Sbjct: 214 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 256
Query: 938 PCASDVTKTLESCFRISS 955
           P  +++ +  E+ F+ SS
Sbjct: 257 PSFAEIHQAFETMFQESS 274

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 46  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 104
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 105 LRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 158
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP 
Sbjct: 159 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 218
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
               G+  S V      Y     D  ++            ++ E+M     C   +P+ R
Sbjct: 219 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 261
Query: 938 PCASDVTKTLESCFRISS 955
           P  +++ +  E+ F+ SS
Sbjct: 262 PSFAEIHQAFETMFQESS 279

>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The Autoinhibited Conformation Of A Human Death-associated Protein Kinase Length = 321

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 13/155 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           + ++H N++ LH V  +     L+ E + G EL + L    +LS E        I   + 
Sbjct: 70  RQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVN 129
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKD--EPHLRLSVPGLAYCTDS----KSI-NSSAYVA 845
           +LH   +  +   D+ P  +++  K+   PH++L   GLA+  +     K+I  +  +VA
Sbjct: 130 YLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVA 186
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           PE    + +  + D++  G+I   LL+G SP   D
Sbjct: 187 PEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD 221

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 130/297 (43%), Gaps = 39/297 (13%)
Query: 124 GPV-PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSL 182
           GPV P      L ++  S+  L  K+P+++   + L  LDL  N +         N+ +L
Sbjct: 22  GPVCPFRCQCHLRVVQCSDLGLE-KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNL 78
Query: 183 QIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG 242
               L +N++    P     L  L+ +YL  N L  E+P+++                  
Sbjct: 79  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP----------------- 120
Query: 243 QIPPSFGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYL-SGEIPEEVIQ-L 299
                      L+ L +++N++T  + KS+  GL  ++  +L  N L S  I     Q +
Sbjct: 121 ---------KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 300 QNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNF 359
           + L  + +   N T  IP  L   P L  L L  N+ +    ++L   NNL  + LS N 
Sbjct: 171 KKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227
Query: 360 LTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEF 416
           ++     +L ++  L +L L +N L  K+P  L+  K ++ V L NN +S   S++F
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 19/246 (7%)
Query: 219 EIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSL 278
           ++PK++   T+L  LDL  N +T      F NL NL  L L  NK++   P +   L  L
Sbjct: 45  KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 279 VSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSG 338
               LS N L  E+PE++   + L+ L +  N  T    S    + ++ V++L +N    
Sbjct: 103 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 339 EIPSNLGKQ--NNLTVIDLS-TNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTC 395
               N   Q    L+ I ++ TN  T  IP+ L    SL +L L  N +      SL   
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNITT--IPQGL--PPSLTELHLDGNKITKVDAASLKGL 215
Query: 396 KSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDL---SGRIGEQKWEMTSLQMLNLA 452
            +L ++ L  N +S   +      P +  L ++ N L    G + + K+    +Q++ L 
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY----IQVVYLH 271
Query: 453 GNNFSG 458
            NN S 
Sbjct: 272 NNNISA 277

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+R++      K  YL+ E+    EL + L+       ++ A  + +    LH+ 
Sbjct: 71  LRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYC 130
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
               V+  D+ P  +++  K E    L +    +   + S+          Y+ PE  E 
Sbjct: 131 HERKVIHRDIKPENLLMGYKGE----LKIADFGWSVHAPSLRRRXMCGTLDYLPPEMIEG 186
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADA 879
           K   EK D++  G++  + L G  P D+
Sbjct: 187 KTHDEKVDLWCAGVLCYEFLVGMPPFDS 214

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNI+R++      K  YL+ E+    EL + L+       ++ A  + +    LH+ 
Sbjct: 72  LRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYC 131
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKES 851
               V+  D+ P  +++  K E    L +    +   + S+          Y+ PE  E 
Sbjct: 132 HERKVIHRDIKPENLLMGYKGE----LKIADFGWSVHAPSLRRRXMCGTLDYLPPEMIEG 187
Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADA 879
           K   EK D++  G++  + L G  P D+
Sbjct: 188 KTHDEKVDLWCAGVLCYEFLVGMPPFDS 215

>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40 Length = 321

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           + ++H N++ LH V  +     L+ E + G EL + L    +LS E        I   + 
Sbjct: 70  RQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVN 129
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKD--EPHLRLSVPGLAYCTDS----KSI-NSSAYVA 845
           +LH   +  +   D+ P  +++  K+   PH++L   GLA+  +     K+I  +  +VA
Sbjct: 130 YLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVA 186
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    + +  + D++  G+I   LL+G SP
Sbjct: 187 PEIVNYEPLGLEADMWSIGVITYILLSGASP 217

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 46  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDY 104
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 105 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 158
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP
Sbjct: 159 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP 217

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 69/158 (43%), Gaps = 7/158 (4%)
Query: 419 LPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLD---LS 475
           LP V +L + GN L   I   K E+T+L  L L GN     LP+    D+L NL    L 
Sbjct: 62  LPNVRYLALGGNKLHD-ISALK-ELTNLTYLILTGNQLQS-LPNGV-FDKLTNLKELVLV 117
Query: 476 ENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASL 535
           EN+        F +L+ L  L +  N+L             L  LDL NNQL        
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVF 177
Query: 536 SEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHN 573
            ++  L QL L++NQL         R+ SL  + + +N
Sbjct: 178 DKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 46  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 104
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 105 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 158
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP
Sbjct: 159 DFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP 217

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 111/258 (43%), Gaps = 38/258 (14%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 287 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 345
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  +++    +V    E HL +++
Sbjct: 346 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLV---GENHLVKVA 399
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP 
Sbjct: 400 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 459
Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
               G+  S V      Y     D  ++            ++ E+M     C   +P+ R
Sbjct: 460 P---GIDLSQV------YELLEKDYRME-----RPEGCPEKVYELMRA---CWQWNPSDR 502
Query: 938 PCASDVTKTLESCFRISS 955
           P  +++ +  E+ F+ SS
Sbjct: 503 PSFAEIHQAFETMFQESS 520

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 46  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 104
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 105 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 158
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP
Sbjct: 159 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP 217

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 41  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 99
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 100 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 153
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP
Sbjct: 154 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP 212

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 45  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 103
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 104 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 157
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP
Sbjct: 158 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP 216

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 41  VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 99
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  D++    +V    E HL +++
Sbjct: 100 LRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLV---GENHLVKVA 153
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP
Sbjct: 154 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP 212

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 16/174 (9%)
Query: 715 KIIDVNTITTSS---FWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE- 770
           KII  +++TT+S      D     K + HPNI++L+     ++  YLV E   G EL + 
Sbjct: 52  KIIKKSSVTTTSNSGALLDEVAVLKQLDHPNIMKLYEFFEDKRNYYLVMEVYRGGELFDE 111
Query: 771 -VLRNLSWERRRKVAIG-IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLSVP 827
            +LR    E    V +  +     +LH H   ++V  D+ P  ++++ K    L ++   
Sbjct: 112 IILRQKFSEVDAAVIMKQVLSGTTYLHKH---NIVHRDLKPENLLLESKSRDALIKIVDF 168
Query: 828 GLAYCTD-----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           GL+   +      + + ++ Y+APE    K   EK D++  G+IL  LL G  P
Sbjct: 169 GLSAHFEVGGKMKERLGTAYYIAPEVLRKK-YDEKCDVWSCGVILYILLCGYPP 221

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 88  PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 145
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D  ++ +++++  G A     ++     +  Y+APE   SK  
Sbjct: 146 -SLDLIYRDLKPENLLID--EQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 202
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 203 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 238

>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Length = 351

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 103/235 (43%), Gaps = 32/235 (13%)
Query: 677 DEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVS---- 732
           D+++     E     GK   S   +  +     QF VK I+DV   T+S   P +S    
Sbjct: 18  DDVLFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVK-IVDVAKFTSS---PGLSTEDL 73
Query: 733 ----QFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS-EVLRNLSWERRRKVAIG- 786
                   ++ HP+IV L     S+   Y+V+E+++G +L  E+++          A+  
Sbjct: 74  KREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVAS 133
Query: 787 -----IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAY------CTD 834
                I +ALR+ H     +++  DV P  V++  K+    ++L   G+A          
Sbjct: 134 HYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVA 190
Query: 835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVE 889
              + +  ++APE  + +   +  D++G G+IL  LL+G  P    +G  E + E
Sbjct: 191 GGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPF---YGTKERLFE 242

>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 3 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           + ++H N++ LH V  +     L+ E + G EL + L    +LS E        I   + 
Sbjct: 70  RQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVN 129
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKD--EPHLRLSVPGLAYCTDS----KSI-NSSAYVA 845
           +LH   +  +   D+ P  +++  K+   PH++L   GLA+  +     K+I  +  +VA
Sbjct: 130 YLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVA 186
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    + +  + D++  G+I   LL+G SP
Sbjct: 187 PEIVNYEPLGLEADMWSIGVITYILLSGASP 217

>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 8 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           + ++H N++ LH V  +     L+ E + G EL + L    +LS E        I   + 
Sbjct: 70  RQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVN 129
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKD--EPHLRLSVPGLAYCTDS----KSI-NSSAYVA 845
           +LH   +  +   D+ P  +++  K+   PH++L   GLA+  +     K+I  +  +VA
Sbjct: 130 YLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVA 186
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    + +  + D++  G+I   LL+G SP
Sbjct: 187 PEIVNYEPLGLEADMWSIGVITYILLSGASP 217

>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1 Kinase Length = 288

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 13/151 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           + ++H N++ LH V  +     L+ E + G EL + L    +LS E        I   + 
Sbjct: 70  RQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVN 129
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKD--EPHLRLSVPGLAYCTDS----KSI-NSSAYVA 845
           +LH   +  +   D+ P  +++  K+   PH++L   GLA+  +     K+I  +  +VA
Sbjct: 130 YLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVA 186
Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    + +  + D++  G+I   LL+G SP
Sbjct: 187 PEIVNYEPLGLEADMWSIGVITYILLSGASP 217

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 11/236 (4%)
Query: 184 IFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQ 243
           +  L +N++      +   L+NL  + L  N +S   P     L  L  L L  N L  +
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114
Query: 244 IPPSFGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYL-SGEIPEEVIQ-LQ 300
           +P        L+ L +++N++T  + KS+  GL  ++  +L  N L S  I     Q ++
Sbjct: 115 LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 301 NLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFL 360
            L  + +   N T  IP  L   P L  L L  N+ +    ++L   NNL  + LS N +
Sbjct: 172 KLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 361 TGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEF 416
           +     +L ++  L +L L +N L  K+P  L+  K ++ V L NN +S   S++F
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 19/246 (7%)
Query: 219 EIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSL 278
           ++PK++   T+L  LDL  N +T      F NL NL  L L  NK++   P +   L  L
Sbjct: 45  KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 279 VSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSG 338
               LS N L  E+PE++   + L+ L +  N  T    S    + ++ V++L +N    
Sbjct: 103 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 339 EIPSNLGKQ--NNLTVIDLS-TNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTC 395
               N   Q    L+ I ++ TN  T  IP+ L    SL +L L  N +      SL   
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNITT--IPQGL--PPSLTELHLDGNKITKVDAASLKGL 215
Query: 396 KSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDL---SGRIGEQKWEMTSLQMLNLA 452
            +L ++ L  N +S   +      P +  L ++ N L    G + + K+    +Q++ L 
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY----IQVVYLH 271
Query: 453 GNNFSG 458
            NN S 
Sbjct: 272 NNNISA 277

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 22/185 (11%)
Query: 710 QFVVKKIIDVNTITTSSFWPDVSQ---FGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
           Q V  KII+   +  S     + +   + +L+ HP+I++L+ V +S+    +V EY  G 
Sbjct: 40  QKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEY-AGN 98
Query: 767 ELSEVL---RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR 823
           EL + +     +S +  R+    I  A+ + H H    +V  D+ P  +++D     HL 
Sbjct: 99  ELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLD----EHLN 151
Query: 824 LSVP--GLA-YCTDSKSINSSA----YVAPETKESKDIT-EKGDIYGFGLILIDLLTGKS 875
           + +   GL+   TD   + +S     Y APE    K     + D++  G+IL  +L  + 
Sbjct: 152 VKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRL 211
Query: 876 PADAD 880
           P D +
Sbjct: 212 PFDDE 216

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +I+D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLIID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIIISKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFH 797
           P IV  +G   S+    +  E+++G  L +VL+    +  E   KV+I + + L +L   
Sbjct: 74  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLRE- 132
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
               ++  DV P  ++V+ + E  L    V G    + + S + + +Y+APE  +    +
Sbjct: 133 -KHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMAPERLQGTHYS 191
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
            + DI+  GL L++L  G+ P
Sbjct: 192 VQSDIWSMGLSLVELAVGRYP 212

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 22/185 (11%)
Query: 710 QFVVKKIIDVNTITTSSFWPDVSQ---FGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
           Q V  KII+   +  S     + +   + +L+ HP+I++L+ V +S+    +V EY  G 
Sbjct: 39  QKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEY-AGN 97
Query: 767 ELSEVL---RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR 823
           EL + +     +S +  R+    I  A+ + H H    +V  D+ P  +++D     HL 
Sbjct: 98  ELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLD----EHLN 150
Query: 824 LSVPGLAY---CTDSKSINSSA----YVAPETKESKDIT-EKGDIYGFGLILIDLLTGKS 875
           + +         TD   + +S     Y APE    K     + D++  G+IL  +L  + 
Sbjct: 151 VKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRL 210
Query: 876 PADAD 880
           P D +
Sbjct: 211 PFDDE 215

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 110/259 (42%), Gaps = 40/259 (15%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K +  +T+    F  + +   K I HPN+V+L GVC  E   Y++ E++    L + 
Sbjct: 248 VAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDY 306
Query: 772 LRNLSWERRRKV-----AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLS 825
           LR  + +    V     A  I+ A+ +L      + +  +++    +V    E HL +++
Sbjct: 307 LRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLV---GENHLVKVA 360
Query: 826 VPGLAYCTDSKSINSSA-------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
             GL+      +  + A       + APE+      + K D++ FG++L ++ T G SP 
Sbjct: 361 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 420
Query: 878 DA-DFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTA 936
              D      ++E       D  ++                ++ E+M     C   +P+ 
Sbjct: 421 PGIDLSQVYELLE------KDYRME---------RPEGCPEKVYELMRA---CWQWNPSD 462
Query: 937 RPCASDVTKTLESCFRISS 955
           RP  +++ +  E+ F+ SS
Sbjct: 463 RPSFAEIHQAFETMFQESS 481

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 127/284 (44%), Gaps = 71/284 (25%)
Query: 57  CQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIXXXXXXXXXXX 116
            +N T++N +ELS+  IS    S++  L  ++ ++ SSNQ+                   
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQV------------------- 163
Query: 117 XXXXXXTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSI 176
                 T   P+ +L+ LE LD+S+N                KV D+            +
Sbjct: 164 ------TDLKPLANLTTLERLDISSN----------------KVSDIS----------VL 191
Query: 177 SNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIG---DLTSLNHL 233
           + +T+L+     +NQ+    P  +G L NL  + L  N L     K+IG    LT+L  L
Sbjct: 192 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDL 244
Query: 234 DLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIP 293
           DL  N ++   P     L+ L  L L  N+++   P  + GL +L + +L++N L    P
Sbjct: 245 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Query: 294 EEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS 337
             +  L+NL  L L+ NN +   P  ++S+ KLQ L   +N+ S
Sbjct: 301 --ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVS 340

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 113/258 (43%), Gaps = 45/258 (17%)
Query: 348 NNLTVIDLSTNFLTGKIP--------------------ETLCDSGSLFKLILFSNSLEGK 387
           NNLT I+ S N LT   P                      L +  +L  L LF+N +   
Sbjct: 63  NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 122
Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQ 447
            P  L    +L R+ L +N +S    S  + L  +  L  S N ++    +    +T+L+
Sbjct: 123 DP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDL--KPLANLTTLE 176
Query: 448 MLNLAGNNFS-----GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNK 502
            L+++ N  S      KL +      LE+L  + N+ S   P   G L+ L +L ++ N+
Sbjct: 177 RLDISSNKVSDISVLAKLTN------LESLIATNNQISDITP--LGILTNLDELSLNGNQ 228
Query: 503 LFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRV 562
           L  DI   L+S   L  LDL+NNQ+S   P  LS +  L +L L  NQ+S   P  L  +
Sbjct: 229 L-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 282
Query: 563 ASLVQVNISHNHFHGSLP 580
            +L  + ++ N      P
Sbjct: 283 TALTNLELNENQLEDISP 300

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 89/210 (42%), Gaps = 13/210 (6%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLH 795
           + I H NIV L  +  S    YLV + + G EL + +    +   +  +  I + L  ++
Sbjct: 75  RKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVY 134
Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEP-HLRLSVPGLAYCTDSKSINSSA-----YVAPETK 849
           +     +V  D+ P  ++   +DE   + +S  GL+       + S+A     YVAPE  
Sbjct: 135 YLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVL 194
Query: 850 ESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVD-- 905
             K  ++  D +  G+I   LL G  P   + D  + E I++ A Y +   + D   D  
Sbjct: 195 AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILK-AEYEFDSPYWDDISDSA 253
Query: 906 -PFIRGHVSSIQNEIVEIMNLALH-CTAGD 933
             FIR  +    N+       A H   AGD
Sbjct: 254 KDFIRNLMEKDPNKRYTCEQAARHPWIAGD 283

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 22/185 (11%)
Query: 710 QFVVKKIIDVNTITTSSFWPDVSQ---FGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
           Q V  KII+   +  S     + +   + +L+ HP+I++L+ V +S+    +V EY  G 
Sbjct: 34  QKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEY-AGN 92
Query: 767 ELSEVL---RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR 823
           EL + +     +S +  R+    I  A+ + H H    +V  D+ P  +++D     HL 
Sbjct: 93  ELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLD----EHLN 145
Query: 824 LSVPGLAY---CTDSKSINSSA----YVAPETKESKDIT-EKGDIYGFGLILIDLLTGKS 875
           + +         TD   + +S     Y APE    K     + D++  G+IL  +L  + 
Sbjct: 146 VKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRL 205
Query: 876 PADAD 880
           P D +
Sbjct: 206 PFDDE 210

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 91/202 (45%), Gaps = 20/202 (9%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 41  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 99
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 100 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 156
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 157 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSAXKS 214
Query: 858 GDIYGFGLILIDLLTGKSPADA 879
            D++  G I+  L+ G  P  A
Sbjct: 215 SDLWALGCIIYQLVAGLPPFRA 236

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 22/185 (11%)
Query: 710 QFVVKKIIDVNTITTSSFWPDVSQ---FGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK 766
           Q V  KII+   +  S     + +   + +L+ HP+I++L+ V +S+    +V EY  G 
Sbjct: 30  QKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEY-AGN 88
Query: 767 ELSEVL---RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR 823
           EL + +     +S +  R+    I  A+ + H H    +V  D+ P  +++D     HL 
Sbjct: 89  ELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLD----EHLN 141
Query: 824 LSVPGLAY---CTDSKSINSSA----YVAPETKESKDIT-EKGDIYGFGLILIDLLTGKS 875
           + +         TD   + +S     Y APE    K     + D++  G+IL  +L  + 
Sbjct: 142 VKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRL 201
Query: 876 PADAD 880
           P D +
Sbjct: 202 PFDDE 206

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 16  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 74
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 75  TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 131
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 132 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 189
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            D++  G I+  L+ G  P  A  ++ + + I++
Sbjct: 190 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 223

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 39  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 97
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 98  TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 154
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 155 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANAFVGTAQYVSPELLTEKSACKS 212
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            D++  G I+  L+ G  P  A  ++ + + I++
Sbjct: 213 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 246

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 39  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 97
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 98  TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 154
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 155 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 212
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            D++  G I+  L+ G  P  A  ++ + + I++
Sbjct: 213 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 246

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 18  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 76
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 77  TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 133
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 134 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 191
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            D++  G I+  L+ G  P  A  ++ + + I++
Sbjct: 192 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 225

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 19  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 77
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 78  TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 134
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 135 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 192
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            D++  G I+  L+ G  P  A  ++ + + I++
Sbjct: 193 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 226

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 41  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 99
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 100 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 156
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 157 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 214
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            D++  G I+  L+ G  P  A  ++ + + I++
Sbjct: 215 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 248

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 41  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 99
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 100 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 156
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 157 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 214
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            D++  G I+  L+ G  P  A  ++ + + I++
Sbjct: 215 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 248

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 23  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 81
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 82  TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 138
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 139 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 196
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            D++  G I+  L+ G  P  A  ++ + + I++
Sbjct: 197 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 230

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 17  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 75
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 76  TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 132
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 133 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 190
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            D++  G I+  L+ G  P  A  ++ + + I++
Sbjct: 191 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 224

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 44  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 102
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 103 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 159
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 160 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 217
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            D++  G I+  L+ G  P  A  ++ + + I++
Sbjct: 218 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 251

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 38  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 96
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 97  TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 153
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 154 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 211
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            D++  G I+  L+ G  P  A  ++ + + I++
Sbjct: 212 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 245

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 38  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 96
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 97  TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 153
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 154 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKS 211
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            D++  G I+  L+ G  P  A  ++ + + I++
Sbjct: 212 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 245

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 39  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 97
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 98  TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 154
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 155 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 212
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            D++  G I+  L+ G  P  A  ++ + + I++
Sbjct: 213 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 246

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 42  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 100
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 101 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 157
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 158 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 215
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            D++  G I+  L+ G  P  A  ++ + + I++
Sbjct: 216 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 249

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 41  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 99
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 100 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 156
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 157 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 214
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            D++  G I+  L+ G  P  A  ++ + + I++
Sbjct: 215 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 248

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 42  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 100
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 101 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 157
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 158 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKS 215
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            D++  G I+  L+ G  P  A  ++ + + I++
Sbjct: 216 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 249

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFH 797
           P IV  +G   S+    +  E+++G  L +VL+    +  +   KV+I + K L +L   
Sbjct: 83  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE- 141
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
               ++  DV P  ++V+ + E  L    V G    + + S + + +Y++PE  +    +
Sbjct: 142 -KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYS 200
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
            + DI+  GL L+++  G+ P
Sbjct: 201 VQSDIWSMGLSLVEMAVGRYP 221

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 91/202 (45%), Gaps = 20/202 (9%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 41  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 99
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 100 TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 156
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 157 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 214
Query: 858 GDIYGFGLILIDLLTGKSPADA 879
            D++  G I+  L+ G  P  A
Sbjct: 215 SDLWALGCIIYQLVAGLPPFRA 236

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
           HP +  L    ++      V EY  G EL   L   R  + ER R     I  AL +LH 
Sbjct: 64  HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH- 122
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS--------AYVAPET 848
             S  VV  D+    +++D   + H++++  GL  C +  S  ++         Y+APE 
Sbjct: 123 --SRDVVYRDIKLENLMLDK--DGHIKITDFGL--CKEGISDGATMKXFCGTPEYLAPEV 176
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP 876
            E  D     D +G G+++ +++ G+ P
Sbjct: 177 LEDNDYGRAVDWWGLGVVMYEMMCGRLP 204

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 87  PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 144
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN---SSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 145 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGY 201
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 202 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 237

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
           HP +  L    ++      V EY  G EL   L   R  + ER R     I  AL +LH 
Sbjct: 64  HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH- 122
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS--------AYVAPET 848
             S  VV  D+    +++D   + H++++  GL  C +  S  ++         Y+APE 
Sbjct: 123 --SRDVVYRDIKLENLMLD--KDGHIKITDFGL--CKEGISDGATMKXFCGTPEYLAPEV 176
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP 876
            E  D     D +G G+++ +++ G+ P
Sbjct: 177 LEDNDYGRAVDWWGLGVVMYEMMCGRLP 204

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 94  PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 151
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 152 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 208
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 209 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 244

>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN- Dependent Protein Kinase Ii Delta In Complex With Calmodulin Length = 327

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 732 SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKAL 791
           ++  +L+ HPNIVRLH     E   YLV++ + G EL E +    +      +  I + L
Sbjct: 54  ARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQIL 113
Query: 792 RFLHFHCS-PSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTDSKS------INSSAY 843
             ++ HC    +V  D+ P  +++  K +   ++L+  GLA               +  Y
Sbjct: 114 ESVN-HCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGY 172
Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           ++PE        +  D++  G+IL  LL G  P
Sbjct: 173 LSPEVLRKDPYGKPVDMWACGVILYILLVGYPP 205

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 219 EIPKEIGDLTSLNHLDLVYN-NLTGQIPPS--FGNLSNLRYLFLYQNKLTGSIPKSILGL 275
           EIP++I     L+  +L+ N N  G+I     FG L +L  L L +N+LTG  P +  G 
Sbjct: 22  EIPRDI----PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77
Query: 276 KSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQ 335
             +    L +N +     +  + L  L+ L+L+ N  +  +P S   +  L  L L SN 
Sbjct: 78  SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137
Query: 336 FS 337
           F+
Sbjct: 138 FN 139

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 487 FGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDL 546
           FGRL  L++L++ RN+L G  P        +  L L  N++          +  L  L+L
Sbjct: 50  FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 547 SENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGNDLCGGDSTSG 606
            +NQ+S  +P +   + SL  +N++ N F     +    LA  A  +    L GG +  G
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPF-----NCNCHLAWFAEWLRKKSLNGGAARCG 164
Query: 607 LP 608
            P
Sbjct: 165 AP 166

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
           HP +  L    ++      V EY  G EL   L   R  + ER R     I  AL +LH 
Sbjct: 64  HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH- 122
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS--------AYVAPET 848
             S  VV  D+    +++D   + H++++  GL  C +  S  ++         Y+APE 
Sbjct: 123 --SRDVVYRDIKLENLMLD--KDGHIKITDFGL--CKEGISDGATMKTFCGTPEYLAPEV 176
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP 876
            E  D     D +G G+++ +++ G+ P
Sbjct: 177 LEDNDYGRAVDWWGLGVVMYEMMCGRLP 204

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 46  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 104
Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNL-SWERR--RKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +R + S++    R     I  AL +LH      ++  
Sbjct: 105 CFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 161
Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--------INSSAYVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S        + ++ YV+PE    K   + 
Sbjct: 162 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKS 219
Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            D++  G I+  L+ G  P  A  ++ + + I++
Sbjct: 220 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 253

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 88/225 (39%), Gaps = 41/225 (18%)
Query: 683 TTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHP 741
           T  E +   G+ G    ++ ++  +D  + +K+I +    +       +V    KL  HP
Sbjct: 5   TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKL-EHP 63
Query: 742 NIVRLHGVC-------RSEKAAYLVYEYIEGKELSEVLRNLSW--------ERRRKVAI- 785
            IVR            + + ++  VY YI+  +L        W        ER R V + 
Sbjct: 64  GIVRYFNAWLEKNTTEKLQPSSPKVYLYIQ-MQLCRKENLKDWMNGRCTIEERERSVCLH 122
Query: 786 ---GIAKALRFLHFHCSPSVVAGDVSP----------------GKVIVDGKDEPHLRLSV 826
               IA+A+ FLH   S  ++  D+ P                G V    +DE    +  
Sbjct: 123 IFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLT 179
Query: 827 PGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLL 871
           P  AY   +  + +  Y++PE       + K DI+  GLIL +LL
Sbjct: 180 PMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELL 224

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 160 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
           HP +  L    ++      V EY  G EL   L   R  + ER R     I  AL +LH 
Sbjct: 69  HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH- 127
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS--------AYVAPET 848
             S  VV  D+    +++D   + H++++  GL  C +  S  ++         Y+APE 
Sbjct: 128 --SRDVVYRDIKLENLMLDK--DGHIKITDFGL--CKEGISDGATMKXFCGTPEYLAPEV 181
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP 876
            E  D     D +G G+++ +++ G+ P
Sbjct: 182 LEDNDYGRAVDWWGLGVVMYEMMCGRLP 209

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
           HP +  L    ++      V EY  G EL   L   R  + ER R     I  AL +LH 
Sbjct: 64  HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH- 122
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS--------AYVAPET 848
             S  VV  D+    +++D   + H++++  GL  C +  S  ++         Y+APE 
Sbjct: 123 --SRDVVYRDIKLENLMLDK--DGHIKITDFGL--CKEGISDGATMKXFCGTPEYLAPEV 176
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP 876
            E  D     D +G G+++ +++ G+ P
Sbjct: 177 LEDNDYGRAVDWWGLGVVMYEMMCGRLP 204

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN---SSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 160 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 116/260 (44%), Gaps = 50/260 (19%)
Query: 348 NNLTVIDLSTNFLTGKIP--------------------ETLCDSGSLFKLILFSNSLEGK 387
           NNLT I+ S N LT   P                      L +  +L  L LF+N +   
Sbjct: 67  NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 126
Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELS--SEFTRLPLVYFLDISGNDLSGRIGEQKWEMTS 445
            P  L    +L R+ L +N +S ++S  S  T L  + F    GN ++    +    +T+
Sbjct: 127 DP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSF----GNQVTDL--KPLANLTT 177
Query: 446 LQMLNLAGNNFS-----GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISR 500
           L+ L+++ N  S      KL +      LE+L  + N+ S   P   G L+ L +L ++ 
Sbjct: 178 LERLDISSNKVSDISVLAKLTN------LESLIATNNQISDITP--LGILTNLDELSLNG 229
Query: 501 NKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLG 560
           N+L  DI   L+S   L  LDL+NNQ+S   P  LS +  L +L L  NQ+S   P  L 
Sbjct: 230 NQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 283
Query: 561 RVASLVQVNISHNHFHGSLP 580
            + +L  + ++ N      P
Sbjct: 284 GLTALTNLELNENQLEDISP 303

>pdb|3SOA|A Chain A, Full-Length Human Camkii Length = 444

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 17/239 (7%)
Query: 732 SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKAL 791
           ++  +L+ HPNIVRLH     E   YL+++ + G EL E +    +      +  I + L
Sbjct: 61  ARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQIL 120
Query: 792 RFLHFHCSP-SVVAGDVSPGKVIVDGK-DEPHLRLSVPGLAYCTDSKS------INSSAY 843
             +  HC    VV  ++ P  +++  K     ++L+  GLA   + +         +  Y
Sbjct: 121 EAV-LHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGY 179
Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLTGKSP-ADADFGVHESIVEWARYCYSDCHLDT 902
           ++PE        +  D++  G+IL  LL G  P  D D       ++   Y +     DT
Sbjct: 180 LSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDT 239
Query: 903 WVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISSCVSGLK 961
            V P        + N+++ I N +   TA +    P  S  + T+ SC      V  LK
Sbjct: 240 -VTP----EAKDLINKMLTI-NPSKRITAAEALKHPWISHRS-TVASCMHRQETVDCLK 291

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
           HP +  L    ++      V EY  G EL   L   R  + ER R     I  AL +LH 
Sbjct: 67  HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH- 125
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS--------AYVAPET 848
             S  VV  D+    +++D   + H++++  GL  C +  S  ++         Y+APE 
Sbjct: 126 --SRDVVYRDIKLENLMLD--KDGHIKITDFGL--CKEGISDGATMKTFCGTPEYLAPEV 179
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP 876
            E  D     D +G G+++ +++ G+ P
Sbjct: 180 LEDNDYGRAVDWWGLGVVMYEMMCGRLP 207

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 166/435 (38%), Gaps = 98/435 (22%)
Query: 158 LKVLDLGGNVLVGEIPLSISN-ITSLQIFTLA-SNQLIGSIPREIGQLRNLKWIYLGYNN 215
           L++LD+ GN    +I  + SN I+  Q F+L  ++ ++G+                G++N
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA--------------GFGFHN 251
Query: 216 LSGEIPKEIGDL--TSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSIL 273
           +          L  +S+ HLDL +  +       F  L +L+ L L  NK+     ++  
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311
Query: 274 GLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWS 333
           GL +L   +LS N L GE               L+S+NF G        +PK+  + L  
Sbjct: 312 GLDNLQVLNLSYNLL-GE---------------LYSSNFYG--------LPKVAYIDLQK 347
Query: 334 NQFSGEIPSNLGKQNNLTVIDLSTNFLTG-----KIPETLCDSGSLFKLILFSNSLEGKI 388
           N  +            L  +DL  N LT       IP+       L  L         KI
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL--------PKI 399
Query: 389 PNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQM 448
            N  +    L   RL+N             L ++YFL                 +  LQ+
Sbjct: 400 -NLTANLIHLSENRLEN-------------LDILYFL---------------LRVPHLQI 430
Query: 449 LNLAGNNFSGKLPDSFGSDQ--LENLDLSENRFSGTIPRS-----FGRLSELMQLKISRN 501
           L L  N FS    D   S+   LE L L EN              F  LS L  L ++ N
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490
Query: 502 KLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPV-LGQLDLSENQLSGKIPQTLG 560
            L    P   S    L  L L++N+L+     S +++P  L  LD+S NQL    P    
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLT---VLSHNDLPANLEILDISRNQLLAPNPDVF- 546
Query: 561 RVASLVQVNISHNHF 575
              SL  ++I+HN F
Sbjct: 547 --VSLSVLDITHNKF 559

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLXGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 160 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLAGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6 Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 6/145 (4%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNIVR   V  +     +V EY  G EL E + N       +      + +  + + 
Sbjct: 72  LRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYA 131
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-----YCTDSKSINSSAYVAPETKESK 852
            +  V   D+     ++DG   P L+++  G +     +     ++ + AY+APE    K
Sbjct: 132 HAMQVAHRDLKLENTLLDGSPAPRLKIADFGYSKASVLHSQPKSAVGTPAYIAPEVLLKK 191
Query: 853 DITEK-GDIYGFGLILIDLLTGKSP 876
           +   K  D++  G+ L  +L G  P
Sbjct: 192 EYDGKVADVWSCGVTLYVMLVGAYP 216

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 116/260 (44%), Gaps = 50/260 (19%)
Query: 348 NNLTVIDLSTNFLTGKIP--------------------ETLCDSGSLFKLILFSNSLEGK 387
           NNLT I+ S N LT   P                      L +  +L  L LF+N +   
Sbjct: 63  NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 122
Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELS--SEFTRLPLVYFLDISGNDLSGRIGEQKWEMTS 445
            P  L    +L R+ L +N +S ++S  S  T L  + F    GN ++    +    +T+
Sbjct: 123 DP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLNF----GNQVTDL--KPLANLTT 173
Query: 446 LQMLNLAGNNFS-----GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISR 500
           L+ L+++ N  S      KL +      LE+L  + N+ S   P   G L+ L +L ++ 
Sbjct: 174 LERLDISSNKVSDISVLAKLTN------LESLIATNNQISDITP--LGILTNLDELSLNG 225
Query: 501 NKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLG 560
           N+L  DI   L+S   L  LDL+NNQ+S   P  LS +  L +L L  NQ+S   P  L 
Sbjct: 226 NQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 279
Query: 561 RVASLVQVNISHNHFHGSLP 580
            + +L  + ++ N      P
Sbjct: 280 GLTALTNLELNENQLEDISP 299

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY  G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  GLA     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLMID--QQGYIKVTDFGLAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 33/209 (15%)
Query: 687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDV---SQFGKLIMHPNI 743
           +L   G     + Y  R + N     +KK+   +   ++  W D+    +F + + HPN 
Sbjct: 58  DLREIGHGSFGAVYFARDVRNSEVVAIKKM-SYSGKQSNEKWQDIIKEVRFLQKLRHPNT 116
Query: 744 VRLHGVCRSEKAAYLVYEYIEG--KELSEVLRN-LSWERRRKVAIGIAKALRFLHFHCSP 800
           ++  G    E  A+LV EY  G   +L EV +  L       V  G  + L +LH H   
Sbjct: 117 IQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH--- 173
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--SKSINSSA--------YVAPETKE 850
           +++  DV  G ++          LS PGL    D  S SI + A        ++APE   
Sbjct: 174 NMIHRDVKAGNIL----------LSEPGLVKLGDFGSASIMAPANXFVGTPYWMAPEVIL 223
Query: 851 SKDITE---KGDIYGFGLILIDLLTGKSP 876
           + D  +   K D++  G+  I+L   K P
Sbjct: 224 AMDEGQYDGKVDVWSLGITCIELAERKPP 252

>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase Iib Isoform 1 (camk2b) Length = 295

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 9/149 (6%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALR-FL 794
           +L+ H NIVRLH     E   YLV++ + G EL E +    +      +  I + L   L
Sbjct: 58  RLLKHSNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVL 117
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTDSKS------INSSAYVAPE 847
           H H    VV  D+ P  +++  K +   ++L+  GLA               +  Y++PE
Sbjct: 118 HCH-QMGVVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPE 176
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
               +   +  DI+  G+IL  LL G  P
Sbjct: 177 VLRKEAYGKPVDIWACGVILYILLVGYPP 205

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 160 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 160 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 33/209 (15%)
Query: 687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDV---SQFGKLIMHPNI 743
           +L   G     + Y  R + N     +KK+   +   ++  W D+    +F + + HPN 
Sbjct: 19  DLREIGHGSFGAVYFARDVRNSEVVAIKKM-SYSGKQSNEKWQDIIKEVRFLQKLRHPNT 77
Query: 744 VRLHGVCRSEKAAYLVYEYIEG--KELSEVLRN-LSWERRRKVAIGIAKALRFLHFHCSP 800
           ++  G    E  A+LV EY  G   +L EV +  L       V  G  + L +LH H   
Sbjct: 78  IQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH--- 134
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--SKSINSSA--------YVAPETKE 850
           +++  DV  G ++          LS PGL    D  S SI + A        ++APE   
Sbjct: 135 NMIHRDVKAGNIL----------LSEPGLVKLGDFGSASIMAPANXFVGTPYWMAPEVIL 184
Query: 851 SKDITE---KGDIYGFGLILIDLLTGKSP 876
           + D  +   K D++  G+  I+L   K P
Sbjct: 185 AMDEGQYDGKVDVWSLGITCIELAERKPP 213

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 6/147 (4%)
Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISN-ITSLQI 184
           VP G  ++   LDL  N L           + L  L LGGN L   +P  + N +TSL  
Sbjct: 22  VPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTY 80
Query: 185 FTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTG 242
             L++NQL  S+P  +  +L  LK + L  N L   +P  + D LT L  L L  N L  
Sbjct: 81  LNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS 138
Query: 243 QIPPSFGNLSNLRYLFLYQNKLTGSIP 269
                F  L++L+Y++L+ N    + P
Sbjct: 139 VPDGVFDRLTSLQYIWLHDNPWDCTCP 165

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 160 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADEPIQIYEKIV 251

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 122 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 179
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 180 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 236
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 237 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 272

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFH 797
           P IV  +G   S+    +  E+++G  L +VL+    +  +   KV+I + K L +L   
Sbjct: 64  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE- 122
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
               ++  DV P  ++V+ + E  L    V G    + + S + + +Y++PE  +    +
Sbjct: 123 -KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYS 181
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
            + DI+  GL L+++  G+ P
Sbjct: 182 VQSDIWSMGLSLVEMAVGRYP 202

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFH 797
           P IV  +G   S+    +  E+++G  L +VL+    +  +   KV+I + K L +L   
Sbjct: 64  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE- 122
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
               ++  DV P  ++V+ + E  L    V G    + + S + + +Y++PE  +    +
Sbjct: 123 -KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYS 181
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
            + DI+  GL L+++  G+ P
Sbjct: 182 VQSDIWSMGLSLVEMAVGRYP 202

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY  G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  GLA     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLMID--QQGYIQVTDFGLAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFH 797
           P IV  +G   S+    +  E+++G  L +VL+    +  +   KV+I + K L +L   
Sbjct: 64  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE- 122
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
               ++  DV P  ++V+ + E  L    V G    + + S + + +Y++PE  +    +
Sbjct: 123 -KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYS 181
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
            + DI+  GL L+++  G+ P
Sbjct: 182 VQSDIWSMGLSLVEMAVGRYP 202

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
Query: 737 LIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALR 792
           ++ HP +V LH     +    ++YE++ G EL E + +    +S +   +    + K L 
Sbjct: 210 VLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLC 269
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK-----SINSSAYVAPE 847
            +H +   + V  D+ P  ++   K    L+L   GL    D K     +  ++ + APE
Sbjct: 270 HMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPE 326
Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP 876
             E K +    D++  G++   LL+G SP
Sbjct: 327 VAEGKPVGYYTDMWSVGVLSYILLSGLSP 355

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFH 797
           P IV  +G   S+    +  E+++G  L +VL+    +  +   KV+I + K L +L   
Sbjct: 64  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE- 122
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
               ++  DV P  ++V+ + E  L    V G    + + S + + +Y++PE  +    +
Sbjct: 123 -KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYS 181
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
            + DI+  GL L+++  G+ P
Sbjct: 182 VQSDIWSMGLSLVEMAVGRYP 202

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 20/153 (13%)
Query: 737 LIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL--------RNLSWERRRKVAIGIA 788
           ++ HP +V LH     +    ++YE++ G EL E +         + + E  R+V  G+ 
Sbjct: 104 VLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLC 163
Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK-----SINSSAY 843
                 H H + + V  D+ P  ++   K    L+L   GL    D K     +  ++ +
Sbjct: 164 ------HMHEN-NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEF 216
Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
            APE  E K +    D++  G++   LL+G SP
Sbjct: 217 AAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSP 249

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++  +  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYQMAAGYPPFFADQPIQIYEKIV 251

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 30/254 (11%)
Query: 351 TVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRL-- 408
           T++DL  N ++    +       L+ L+L +N +      + S  + L+++ +  N L  
Sbjct: 57  TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE 116
Query: 409 -SGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNF--SGKLPDSFG 465
               L S    L       I  N +          + ++  + + GN    SG  P +F 
Sbjct: 117 IPPNLPSSLVEL------RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 466 SDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNN 525
             +L  L +SE + +G IP+       L +L +  NK+     E+L    KL  L L +N
Sbjct: 171 GLKLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227
Query: 526 QLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAF 585
           Q+      SLS +P L +L L  N+LS ++P  L  +  L+QV   H +           
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL-KLLQVVYLHTN----------- 274
Query: 586 LAINATAVAGNDLC 599
              N T V  ND C
Sbjct: 275 ---NITKVGVNDFC 285

>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle Protein Titin Length = 321

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIG----IAKALRFLH 795
           H NI+ LH    S +   +++E+I G ++ E +   ++E   +  +     + +AL+FLH
Sbjct: 60  HRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLH 119
Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS-----INSSAYVAPETKE 850
            H   ++   D+ P  +I   +    +++   G A              +  Y APE  +
Sbjct: 120 SH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQ 176
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSD 897
              ++   D++  G ++  LL+G +P  A+ +  + E+I+  A Y + +
Sbjct: 177 HDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMN-AEYTFDE 224

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFH 797
           P IV  +G   S+    +  E+++G  L +VL+    +  +   KV+I + K L +L   
Sbjct: 64  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE- 122
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
               ++  DV P  ++V+ + E  L    V G    + + S + + +Y++PE  +    +
Sbjct: 123 -KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYS 181
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
            + DI+  GL L+++  G+ P
Sbjct: 182 VQSDIWSMGLSLVEMAVGRYP 202

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHF 796
           HP +  L    ++      V EY  G EL   L   R  + ER R     I  AL +LH 
Sbjct: 64  HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH- 122
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS--------AYVAPET 848
             S  VV  D+    +++D   + H++++  GL  C +  S  ++         Y+APE 
Sbjct: 123 --SRDVVYRDIKLENLMLD--KDGHIKITDFGL--CKEGISDGATMKTFCGTPEYLAPEV 176
Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP 876
            E  D     D +G G+++ +++ G+ P
Sbjct: 177 LEDNDYGRAVDWWGLGVVMYEMMCGRLP 204

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFH 797
           P IV  +G   S+    +  E+++G  L +VL+    +  +   KV+I + K L +L   
Sbjct: 91  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE- 149
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
               ++  DV P  ++V+ + E  L    V G    + + S + + +Y++PE  +    +
Sbjct: 150 -KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYS 208
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
            + DI+  GL L+++  G+ P
Sbjct: 209 VQSDIWSMGLSLVEMAVGRYP 229

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 11/147 (7%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL-SWERRRKVAIGIAKALRFL 794
           K + H NIV LH +  +EK+  LV+EY++ K+L + L +  +      V + + + LR L
Sbjct: 55  KDLKHANIVTLHDIIHTEKSLTLVFEYLD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGL 113
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPET 848
            +     V+  D+ P  ++++ + E  L+L+  GLA        T    + +  Y  P+ 
Sbjct: 114 AYCHRQKVLHRDLKPQNLLINERGE--LKLADFGLARAKSIPTKTYDNEVVTLWYRPPDI 171
Query: 849 -KESKDITEKGDIYGFGLILIDLLTGK 874
              S D + + D++G G I  ++ TG+
Sbjct: 172 LLGSTDYSTQIDMWGVGCIFYEMATGR 198

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   +    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFAEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFH 797
           P IV  +G   S+    +  E+++G  L +VL+    +  +   KV+I + K L +L   
Sbjct: 67  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE- 125
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPG-LAYCTDSKSINSSAYVAPETKESKDIT 855
               ++  DV P  ++V+ + E  L    V G L     ++ + + +Y++PE  +    +
Sbjct: 126 -KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDEMANEFVGTRSYMSPERLQGTHYS 184
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
            + DI+  GL L+++  G+ P
Sbjct: 185 VQSDIWSMGLSLVEMAVGRYP 205

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFH 797
           P IV  +G   S+    +  E+++G  L +VL+    +  +   KV+I + K L +L   
Sbjct: 126 PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREK 185
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLAYCTDSKS-INSSAYVAPETKESKDIT 855
               ++  DV P  ++V+ + E  L    V G    + + S + + +Y++PE  +    +
Sbjct: 186 HK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYS 243
Query: 856 EKGDIYGFGLILIDLLTGKSP 876
            + DI+  GL L+++  G+ P
Sbjct: 244 VQSDIWSMGLSLVEMAVGRYP 264

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL-RNLSWERRRKVAIGIAKALRFL 794
           K + HPNIV L  V  SE+   LV+E++E K+L +VL  N +  +  ++ I + + LR +
Sbjct: 74  KELHHPNIVSLIDVIHSERCLTLVFEFME-KDLKKVLDENKTGLQDSQIKIYLYQLLRGV 132
Query: 795 HFHCSP-SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPE 847
             HC    ++  D+ P  ++++   +  L+L+  GLA        + +  + +  Y AP+
Sbjct: 133 A-HCHQHRILHRDLKPQNLLINS--DGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPD 189
Query: 848 T-KESKDITEKGDIYGFGLILIDLLTGK 874
               SK  +   DI+  G I  +++TGK
Sbjct: 190 VLMGSKKYSTSVDIWSIGCIFAEMITGK 217

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL-RNLSWERRRKVAIGIAKALRFL 794
           K + HPNIV L  V  SE+   LV+E++E K+L +VL  N +  +  ++ I + + LR +
Sbjct: 74  KELHHPNIVSLIDVIHSERCLTLVFEFME-KDLKKVLDENKTGLQDSQIKIYLYQLLRGV 132
Query: 795 HFHCSP-SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVAPE 847
             HC    ++  D+ P  ++++   +  L+L+  GLA        + +  + +  Y AP+
Sbjct: 133 A-HCHQHRILHRDLKPQNLLINS--DGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPD 189
Query: 848 T-KESKDITEKGDIYGFGLILIDLLTGK 874
               SK  +   DI+  G I  +++TGK
Sbjct: 190 VLMGSKKYSTSVDIWSIGCIFAEMITGK 217

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 87/179 (48%), Gaps = 18/179 (10%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K I   +++   F  +     KL  HP +V+L+GVC  +    LV+E++E   LS+ 
Sbjct: 54  VAIKTIKEGSMSEDDFIEEAEVMMKL-SHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDY 112
Query: 772 LRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
           LR      + E    + + + + + +L   C   V+  D++    +V G+++  +++S  
Sbjct: 113 LRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLV-GENQV-IKVSDF 167
Query: 828 GLA-YCTDSKSINSSA------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPAD 878
           G+  +  D +  +S+       + +PE       + K D++ FG+++ ++ + GK P +
Sbjct: 168 GMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE 226

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 195/449 (43%), Gaps = 54/449 (12%)
Query: 126 VPIGSLSRLEILDLSNNMLSG-KIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQI 184
           +P+ +   LE L L +N +S  K+P+   +   LKVLD   N +     LS  +++SLQ 
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPT-EKLKVLDFQNNAIHY---LSKEDMSSLQQ 178
Query: 185 FT-----LASNQLIGSIP----------REIGQLRNLKWIYLGYNNLSGEIPKEIGDLTS 229
            T     L  N + G  P             G  +NL  I+ G  N + +    +G    
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ-SLWLGTFED 237
Query: 230 LNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLS 289
           ++  D+      G    S  +++  ++ F     ++ +      GL+ L   DL+  +LS
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFF---NISSNTFHCFSGLQEL---DLTATHLS 291
Query: 290 GEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSN-LGKQN 348
            E+P  ++ L  L+ L L +N F      S ++ P L  L +  N    E+ +  L    
Sbjct: 292 -ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 349 NLTVIDLSTNFLTGKIPETLCDSGSLFKLI-LFSNSLEGKIPNSLST-----CKSLRRVR 402
           NL  +DLS +     I  + C +  L  L  L S +L    P SL T     C  L  + 
Sbjct: 351 NLRELDLSHD----DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406
Query: 403 LQNNRLS-GELSSEFTRLPLVYFLDISGN--DLSGRIGEQKWE-MTSLQMLNLAGNNFSG 458
           L   RL   +  S F  L L+  L++S +  D+S    EQ ++ + +LQ LNL GN+F  
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS---SEQLFDGLPALQHLNLQGNHFPK 463
Query: 459 KLPDSFGSDQ----LENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSC 514
                  S Q    LE L LS    S     +F  L  +  + +S N+L     E LS  
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523
Query: 515 KKLVSLDLSNNQLSGHIPASLSEMPVLGQ 543
           K  + L+L++N +S  +P   S +P+L Q
Sbjct: 524 KG-IYLNLASNHISIILP---SLLPILSQ 548

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 122 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 179
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A      +     +  Y+APE   SK  
Sbjct: 180 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGATWTLCGTPEYLAPEIILSKGY 236
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 237 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 272

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +        R  A  I     +LH  
Sbjct: 94  PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 151
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 152 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 208
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 209 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 244

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +        R  A  I     +LH  
Sbjct: 122 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 179
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 180 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 236
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 237 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 272

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY  G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLMID--QQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +        R  A  I     +LH  
Sbjct: 96  PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 153
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 154 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 210
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 211 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 246

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +        R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY  G E+   LR +   S    R  A  I     +LH  
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 160 -SLDLIYRDLKPENLMID--QQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +        R  A  I     +LH  
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 160 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252

>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain Length = 402

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 36/212 (16%)
Query: 702 VRSLANDMQFVVKKIIDVNTITTSS---FWP--DVSQFGKLIMHPNIVRLHGVCRSEKAA 756
           VR  A+   + +K +     I  S    FW   D+  F      P +V+L    + +K  
Sbjct: 94  VRHKASQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFAN---SPWVVQLFCAFQDDKYL 150
Query: 757 YLVYEYIEGKELSEVLRNLS----WERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKV 812
           Y+V EY+ G +L  ++ N      W +     + +  AL  +H   S  ++  DV P  +
Sbjct: 151 YMVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVL--ALDAIH---SMGLIHRDVKPDNM 205
Query: 813 IVDGKDEPHLRLS---------VPGLAYCTDSKSINSSAYVAPETKESKD----ITEKGD 859
           ++D     HL+L+           G+ +C    ++ +  Y++PE  +S+        + D
Sbjct: 206 LLDK--HGHLKLADFGTCMKMDETGMVHC--DTAVGTPDYISPEVLKSQGGDGYYGRECD 261
Query: 860 IYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            +  G+ L ++L G +P  AD+  G +  I++
Sbjct: 262 WWSVGVFLFEMLVGDTPFYADSLVGTYSKIMD 293

>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo Form) Length = 289

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 112/273 (41%), Gaps = 39/273 (14%)
Query: 694 KGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE 753
           KGV          ++ + ++K +   +   + SF+   S   KL  H ++V  +GVC   
Sbjct: 26  KGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKL-SHKHLVLNYGVCVCG 84
Query: 754 KAAYLVYEYIEGKELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDV 807
               LV E+++   L   L+      N+ W  + +VA  +A A+ FL      +++ G+V
Sbjct: 85  DENILVQEFVKFGSLDTYLKKNKNCINILW--KLEVAKQLAAAMHFLE---ENTLIHGNV 139
Query: 808 SPGKVIVDGKDE------PHLRLSVPGLAYCTDSKSI--NSSAYVAPETKES-KDITEKG 858
               +++  +++      P ++LS PG++     K I      +V PE  E+ K++    
Sbjct: 140 CAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLAT 199
Query: 859 DIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE 918
           D + FG  L ++ +G    D      +S  +     Y D H                  +
Sbjct: 200 DKWSFGTTLWEICSG---GDKPLSALDS--QRKLQFYEDRH-------------QLPAPK 241
Query: 919 IVEIMNLALHCTAGDPTARPCASDVTKTLESCF 951
             E+ NL  +C   +P  RP    + + L S F
Sbjct: 242 AAELANLINNCMDYEPDHRPSFRAIIRDLNSLF 274

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 14/152 (9%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGI----AKAL 791
           K   HPNIVRL GVC  ++  Y+V E ++G +    LR      R K  + +    A  +
Sbjct: 167 KQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGM 226
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGK------DEPHLRLSVPGLAYCTDSKSINSSAYVA 845
            +L   C    +  D++    +V  K      D    R    G+   +         + A
Sbjct: 227 EYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSREEADGVXAASGGLRQVPVKWTA 283
Query: 846 PETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
           PE       + + D++ FG++L +  + G SP
Sbjct: 284 PEALNYGRYSSESDVWSFGILLWETFSLGASP 315

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +        R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +        R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 109/268 (40%), Gaps = 38/268 (14%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           GK      Y  R L+N ++  +K+I + ++  +     +++   K + H NIV+  G   
Sbjct: 17  GKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIA-LHKHLKHKNIVQYLGSFS 75
Query: 752 SEKAAYLVYEYIEGKELSEVLRNLSWE--RRRKVAIG-----IAKALRFLHFHCSPSVVA 804
                 +  E + G  LS +LR+  W   +  +  IG     I + L++LH      +V 
Sbjct: 76  ENGFIKIFMEQVPGGSLSALLRS-KWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVH 131
Query: 805 GDVSPGKVIVDGKDEPHLRLS-------VPGLAYCTDSKSINSSAYVAPE--TKESKDIT 855
            D+    V+++      L++S       + G+  CT++ +  +  Y+APE   K  +   
Sbjct: 132 RDIKGDNVLINTYSGV-LKISDFGTSKRLAGINPCTETFT-GTLQYMAPEIIDKGPRGYG 189
Query: 856 EKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI 915
           +  DI+  G  +I++ TGK P                Y   +     +     + H    
Sbjct: 190 KAADIWSLGCTIIEMATGKPPF---------------YELGEPQAAMFKVGMFKVHPEIP 234
Query: 916 QNEIVEIMNLALHCTAGDPTARPCASDV 943
           ++   E     L C   DP  R CA+D+
Sbjct: 235 ESMSAEAKAFILKCFEPDPDKRACANDL 262

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +        R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G ++   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYMPGGDMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +        R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY  G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLMID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex With Gold Length = 362

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 6/145 (4%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNIVR   V  +     +V EY  G EL E + N       +      + +  + + 
Sbjct: 72  LRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYC 131
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-----YCTDSKSINSSAYVAPETKESK 852
            +  V   D+     ++DG   P L++   G +     +     ++ + AY+APE    K
Sbjct: 132 HAMQVCHRDLKLENTLLDGSPAPRLKICAFGYSKSSVLHSQPKDTVGTPAYIAPEVLLKK 191
Query: 853 DITEK-GDIYGFGLILIDLLTGKSP 876
           +   K  D++  G+ L  +L G  P
Sbjct: 192 EYDGKVADVWSCGVTLYVMLVGAYP 216

>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 5 Length = 295

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 109/268 (40%), Gaps = 38/268 (14%)
Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           GK      Y  R L+N ++  +K+I + ++  +     +++   K + H NIV+  G   
Sbjct: 31  GKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIA-LHKHLKHKNIVQYLGSFS 89
Query: 752 SEKAAYLVYEYIEGKELSEVLRNLSWE--RRRKVAIG-----IAKALRFLHFHCSPSVVA 804
                 +  E + G  LS +LR+  W   +  +  IG     I + L++LH      +V 
Sbjct: 90  ENGFIKIFMEQVPGGSLSALLRS-KWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVH 145
Query: 805 GDVSPGKVIVDGKDEPHLRLS-------VPGLAYCTDSKSINSSAYVAPE--TKESKDIT 855
            D+    V+++      L++S       + G+  CT++ +  +  Y+APE   K  +   
Sbjct: 146 RDIKGDNVLINTYSGV-LKISDFGTSKRLAGINPCTETFT-GTLQYMAPEIIDKGPRGYG 203
Query: 856 EKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI 915
           +  DI+  G  +I++ TGK P                Y   +     +     + H    
Sbjct: 204 KAADIWSLGCTIIEMATGKPPF---------------YELGEPQAAMFKVGMFKVHPEIP 248
Query: 916 QNEIVEIMNLALHCTAGDPTARPCASDV 943
           ++   E     L C   DP  R CA+D+
Sbjct: 249 ESMSAEAKAFILKCFEPDPDKRACANDL 276

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY  G E+   LR +   S    R  A  I     +LH  
Sbjct: 102 PFLVKLEFSFKDNSNLYMVLEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 160 -SLDLIYRDLKPENLLID--QQGYIKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G ++   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYMPGGDMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K I    ++   F  +     KL  HP +V+L+GVC  +    LV+E++E   LS+ 
Sbjct: 34  VAIKTIREGAMSEEDFIEEAEVMMKL-SHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDY 92
Query: 772 LRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
           LR      + E    + + + + + +L   C   V+  D++    +V G+++  +++S  
Sbjct: 93  LRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLV-GENQV-IKVSDF 147
Query: 828 GLA-YCTDSKSINSSA------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPAD 878
           G+  +  D +  +S+       + +PE       + K D++ FG+++ ++ + GK P +
Sbjct: 148 GMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE 206

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 27/162 (16%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS--EVLRN-LSWERRRKVAIGIAKALR 792
           K + H N+V L  VC+ +K  YLV+E+++   L   E+  N L ++  +K    I   + 
Sbjct: 79  KQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIG 138
Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-------RLSVPGLAYCTDSKSINSSAYVA 845
           F H H   +++  D+ P  ++V       L        L+ PG  Y      + +  Y A
Sbjct: 139 FCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVY---DDEVATRWYRA 192
Query: 846 PE-----TKESKDITEKGDIYGFGLILIDLLTGKS--PADAD 880
           PE      K  K +    D++  G ++ ++  G+   P D+D
Sbjct: 193 PELLVGDVKYGKAV----DVWAIGCLVTEMFMGEPLFPGDSD 230

>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase Length = 362

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 6/145 (4%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNIVR   V  +     +V EY  G EL E + N       +      + +  + + 
Sbjct: 72  LRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYC 131
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-----YCTDSKSINSSAYVAPETKESK 852
            +  V   D+     ++DG   P L++   G +     +     ++ + AY+APE    K
Sbjct: 132 HAMQVCHRDLKLENTLLDGSPAPRLKICAFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKK 191
Query: 853 DITEK-GDIYGFGLILIDLLTGKSP 876
           +   K  D++  G+ L  +L G  P
Sbjct: 192 EYDGKVADVWSCGVTLYVMLVGAYP 216

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K I    ++   F  +     KL  HP +V+L+GVC  +    LV+E++E   LS+ 
Sbjct: 32  VAIKTIREGAMSEEDFIEEAEVMMKL-SHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDY 90
Query: 772 LRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
           LR      + E    + + + + + +L   C   V+  D++    +V G+++  +++S  
Sbjct: 91  LRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLV-GENQV-IKVSDF 145
Query: 828 GLA-YCTDSKSINSSA------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPAD 878
           G+  +  D +  +S+       + +PE       + K D++ FG+++ ++ + GK P +
Sbjct: 146 GMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE 204

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K I    ++   F  +     KL  HP +V+L+GVC  +    LV+E++E   LS+ 
Sbjct: 37  VAIKTIREGAMSEEDFIEEAEVMMKL-SHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDY 95
Query: 772 LRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
           LR      + E    + + + + + +L   C   V+  D++    +V G+++  +++S  
Sbjct: 96  LRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLV-GENQV-IKVSDF 150
Query: 828 GLA-YCTDSKSINSSA------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPAD 878
           G+  +  D +  +S+       + +PE       + K D++ FG+++ ++ + GK P +
Sbjct: 151 GMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE 209

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGI----AKAL 791
           K   HPNIVRL GVC  ++  Y+V E ++G +    LR      R K  + +    A  +
Sbjct: 167 KQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGM 226
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA--------Y 843
            +L   C    +  D++    +V  K+   L++S  G++         +S         +
Sbjct: 227 EYLESKC---CIHRDLAARNCLVTEKNV--LKISDFGMSREEADGVYAASGGLRQVPVKW 281
Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLT-GKSP 876
            APE       + + D++ FG++L +  + G SP
Sbjct: 282 TAPEALNYGRYSSESDVWSFGILLWETFSLGASP 315

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL-SEVLRNLSWERRRKVAI--GIAKALRFL 794
           + HPNI+RL+      +  YL+ EY    EL  E+ ++ +++ +R   I   +A AL + 
Sbjct: 80  LHHPNILRLYNYFYDRRRIYLILEYAPRGELYKELQKSCTFDEQRTATIMEELADALMYC 139
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHL-----RLSVPGLAYCTDSKSINSSAYVAPETK 849
           H      V+  D+ P  +++  K E  +      +  P L   T   +++   Y+ PE  
Sbjct: 140 H---GKKVIHRDIKPENLLLGLKGELKIADFGWSVHAPSLRRKTMCGTLD---YLPPEMI 193
Query: 850 ESKDITEKGDIYGFGLILIDLLTGKSPADA 879
           E +   EK D++  G++  +LL G  P ++
Sbjct: 194 EGRMHNEKVDLWCIGVLCYELLVGNPPFES 223

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
           HP + +L    ++    + V E++ G +L    +  R     R R  A  I  AL FLH 
Sbjct: 83  HPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLH- 141
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKE 850
                ++  D+    V++D   E H +L+  G+         T +    +  Y+APE  +
Sbjct: 142 --DKGIIYRDLKLDNVLLD--HEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQ 197
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADAD 880
                   D +  G++L ++L G +P +A+
Sbjct: 198 EMLYGPAVDWWAMGVLLYEMLCGHAPFEAE 227

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 163/421 (38%), Gaps = 54/421 (12%)
Query: 230 LNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPK--SILGLKSLVSFDLSDNY 287
           +N++DL  N++      SF  L +L++L + Q +  G + +  +  GL SL+   L  N 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ-QTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 288 LSGEIPEEVIQLQNLEILHLFSNNFTGKIPSS--LASMPKLQVLQLWSNQFSGEIPSNLG 345
                      L NLE+L L   N  G + S      +  L++L L  N      P++  
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150
Query: 346 -KQNNLTVIDLSTNFLTGKIPETLCD-SGSLFKLILFSN-SLEGKIPNSLSTCKS---LR 399
                  V+DL+ N +     E L +  G  F L+  S+ +L+      L   K     +
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210
Query: 400 RVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGK 459
              +    LSG    E   +   +F  I+G  +   I    + M S    +    NF  K
Sbjct: 211 NTSITTLDLSGNGFKE--SMAKRFFDAIAGTKIQSLILSNSYNMGS----SFGHTNF--K 262
Query: 460 LPDSFGSDQLE-----NLDLSENRFSGTIPRSFGRLSELMQLKISRNKL----------- 503
            PD+F    LE       DLS+++    +   F   ++L QL +++N++           
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322
Query: 504 ------------FGDIPEEL-SSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQ 550
                        G I   +  +  KL  LDLS N +      S   +P L +L L  NQ
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382
Query: 551 LSGKIPQTLGRVASLVQVNISHNHFHGSLPST---GAFLAINATAVAGNDLCGGDSTSGL 607
           L         R+ SL ++ +  N +  S P       +L  N+    G+  C G   SG 
Sbjct: 383 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG---SGK 439
Query: 608 P 608
           P
Sbjct: 440 P 440

>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant V617f (Mg- Atp-Bound Form) Length = 289

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 112/273 (41%), Gaps = 39/273 (14%)
Query: 694 KGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE 753
           KGV          ++ + ++K +   +   + SF+   S   KL  H ++V  +GVC   
Sbjct: 26  KGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKL-SHKHLVLNYGVCFCG 84
Query: 754 KAAYLVYEYIEGKELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDV 807
               LV E+++   L   L+      N+ W  + +VA  +A A+ FL      +++ G+V
Sbjct: 85  DENILVQEFVKFGSLDTYLKKNKNCINILW--KLEVAKQLAWAMHFLE---ENTLIHGNV 139
Query: 808 SPGKVIVDGKDE------PHLRLSVPGLAYCTDSKSI--NSSAYVAPETKES-KDITEKG 858
               +++  +++      P ++LS PG++     K I      +V PE  E+ K++    
Sbjct: 140 CAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLAT 199
Query: 859 DIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE 918
           D + FG  L ++ +G    D      +S  +     Y D H                  +
Sbjct: 200 DKWSFGTTLWEICSG---GDKPLSALDS--QRKLQFYEDRH-------------QLPAPK 241
Query: 919 IVEIMNLALHCTAGDPTARPCASDVTKTLESCF 951
             E+ NL  +C   +P  RP    + + L S F
Sbjct: 242 AAELANLINNCMDYEPDHRPSFRAIIRDLNSLF 274

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 166 NVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIG 225
           N+ +  +P  I   T  Q   L +NQ+    P     L NL+ +Y   N L+  IP  + 
Sbjct: 21  NIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVF 77
Query: 226 D-LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQN 262
           D LT L  LDL  N+L      +F NL +L +++LY N
Sbjct: 78  DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 177 SNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLV 236
           +  T L      SN+ +  +P+ I   R++  +YL  N  +  +PKE+ +   L  +DL 
Sbjct: 6   TECTCLDTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLS 62
Query: 237 YNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPE 294
            N ++     SF N++ L  L L  N+L    P++  GLKSL    L  N +S  +PE
Sbjct: 63  NNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPE 119

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           V  K I    ++   F  +     KL  HP +V+L+GVC  +    LV+E++E   LS+ 
Sbjct: 34  VAIKTIREGAMSEEDFIEEAEVMMKL-SHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDY 92
Query: 772 LRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
           LR      + E    + + + + + +L      SV+  D++    +V G+++  +++S  
Sbjct: 93  LRTQRGLFAAETLLGMCLDVCEGMAYLE---EASVIHRDLAARNCLV-GENQV-IKVSDF 147
Query: 828 GLA-YCTDSKSINSSA------YVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPAD 878
           G+  +  D +  +S+       + +PE       + K D++ FG+++ ++ + GK P +
Sbjct: 148 GMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE 206

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 37/215 (17%)
Query: 720 NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAA-YLVYEYIEGKELSEVLRN---- 774
           N  T  +F  + S   +L  H N+V+L GV   EK   Y+V EY+    L + LR+    
Sbjct: 39  NDATAQAFLAEASVMTQL-RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRS 97
Query: 775 -LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL---A 830
            L  +   K ++ + +A+ +L      + V  D++   V+V   ++   ++S  GL   A
Sbjct: 98  VLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLV--SEDNVAKVSDFGLTKEA 152
Query: 831 YCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP------------- 876
             T         + APE    K  + K D++ FG++L ++ + G+ P             
Sbjct: 153 SSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRV 212
Query: 877 -----ADADFGVHESIVEWARYCYSDCHLDTWVDP 906
                 DA  G   ++ E  + C+   HLD  + P
Sbjct: 213 EKGYKMDAPDGCPPAVYEVMKNCW---HLDAAMRP 244

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 37/215 (17%)
Query: 720 NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAA-YLVYEYIEGKELSEVLRN---- 774
           N  T  +F  + S   +L  H N+V+L GV   EK   Y+V EY+    L + LR+    
Sbjct: 54  NDATAQAFLAEASVMTQL-RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRS 112
Query: 775 -LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL---A 830
            L  +   K ++ + +A+ +L      + V  D++   V+V   ++   ++S  GL   A
Sbjct: 113 VLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLV--SEDNVAKVSDFGLTKEA 167
Query: 831 YCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSP------------- 876
             T         + APE    K  + K D++ FG++L ++ + G+ P             
Sbjct: 168 SSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRV 227
Query: 877 -----ADADFGVHESIVEWARYCYSDCHLDTWVDP 906
                 DA  G   ++ E  + C+   HLD  + P
Sbjct: 228 EKGYKMDAPDGCPPAVYEVMKNCW---HLDAAMRP 259

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 19/151 (12%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHF 796
           HP+I+ L     S    +LV++ +   EL + L     LS +  R +   + +A+ FLH 
Sbjct: 159 HPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLH- 217
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SKSINSSAYVAPET-KE 850
             + ++V  D+ P  +++D  D   +RLS  G +   +      +   +  Y+APE  K 
Sbjct: 218 --ANNIVHRDLKPENILLD--DNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKC 273
Query: 851 SKDITEKG-----DIYGFGLILIDLLTGKSP 876
           S D T  G     D++  G+IL  LL G  P
Sbjct: 274 SMDETHPGYGKEVDLWACGVILFTLLAGSPP 304

>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY+ G E+   LR +   S    R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+AP    SK  
Sbjct: 159 -SLDLIYRDLKPENLLID--QQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPAIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor Length = 353

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSP 800
           P + +LH   ++    Y V EY+ G +L   ++ +   +        A+    L F  S 
Sbjct: 81  PFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSK 140
Query: 801 SVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKESKDI 854
            ++  D+    V++D   E H++++  G+         T      +  Y+APE    +  
Sbjct: 141 GIIYRDLKLDNVMLDS--EGHIKIADFGMCKENIWDGVTTKXFCGTPDYIAPEIIAYQPY 198
Query: 855 TEKGDIYGFGLILIDLLTGKSPADAD 880
            +  D + FG++L ++L G++P + +
Sbjct: 199 GKSVDWWAFGVLLYEMLAGQAPFEGE 224

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
           HP +  +    ++++  + V EY+ G +L    +        R    A  I   L+FLH 
Sbjct: 77  HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLH- 135
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKS---INSSAYVAPETKE 850
             S  +V  D+    +++D   + H++++  G+       D+K+     +  Y+APE   
Sbjct: 136 --SKGIVYRDLKLDNILLDK--DGHIKIADFGMCKENMLGDAKTNXFCGTPDYIAPEILL 191
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
            +      D + FG++L ++L G+SP
Sbjct: 192 GQKYNHSVDWWSFGVLLYEMLIGQSP 217

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 23/158 (14%)
Query: 733 QFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL-SEVLRNLSWERRRKVAIGIAKAL 791
           Q  K + HPNI++L+     +   YLV E   G EL  E++      R+R   +  A+ +
Sbjct: 84  QLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEII-----SRKRFSEVDAARII 138
Query: 792 R-------FLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAYCTDSK-----SI 838
           R       ++H      +V  D+ P  ++++ K  + ++R+   GL+   ++       I
Sbjct: 139 RQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKI 195
Query: 839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
            ++ Y+APE        EK D++  G+IL  LL+G  P
Sbjct: 196 GTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPP 232

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW---ERRRKVAIGIAKALRFLHFH 797
           P +V+L    +     Y+V EY  G E+   LR +        R  A  I     +LH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFXEPHARFYAAQIVLTFEYLH-- 158
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 159 -SLDLIYRDLKPENLMID--QQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 215
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 216 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P + +L    +     Y+V EY  G E+   LR +   S    R  A  I     +LH  
Sbjct: 102 PFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 160 -SLDLIYRDLKPENLMID--QQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL---SWERRRKVAIGIAKALRFLHFH 797
           P + +L    +     Y+V EY  G E+   LR +   S    R  A  I     +LH  
Sbjct: 102 PFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH-- 159
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDI 854
            S  ++  D+ P  +++D   + +++++  G A     ++     +  Y+APE   SK  
Sbjct: 160 -SLDLIYRDLKPENLMID--QQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGY 216
Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIV 888
            +  D +  G+++ ++  G  P  AD    ++E IV
Sbjct: 217 NKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252

>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 361

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFL 794
           + HPNIVR   V  +     +V EY  G EL E + N    S +  R     +   + + 
Sbjct: 71  LRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYC 130
Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRL-----SVPGLAYCTDSKSINSSAYVAPETK 849
           H   +  V   D+     ++DG   P L++     S   + +     ++ + AY+APE  
Sbjct: 131 H---AMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVL 187
Query: 850 ESKDITEK-GDIYGFGLILIDLLTGKSP 876
             K+   K  D++  G+ L  +L G  P
Sbjct: 188 LKKEYDGKVADVWSCGVTLYVMLVGAYP 215

>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain Length = 332

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 17/104 (16%)
Query: 783 VAIGIAKALRFLH---------------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP 827
           + I IA+A+ FLH               F     V  GD   G V    +DE    +  P
Sbjct: 169 IFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDF--GLVTAMDQDEEEQTVLTP 226
Query: 828 GLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLL 871
             AY T    + +  Y++PE     + + K DI+  GLIL +LL
Sbjct: 227 MPAYATHXGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELL 270

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
           HP +  +    ++++  + V EY+ G +L    +        R    A  I   L+FLH 
Sbjct: 78  HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLH- 136
Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKS---INSSAYVAPETKE 850
             S  +V  D+    +++D   + H++++  G+       D+K+     +  Y+APE   
Sbjct: 137 --SKGIVYRDLKLDNILLDK--DGHIKIADFGMCKENMLGDAKTNEFCGTPDYIAPEILL 192
Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP 876
            +      D + FG++L ++L G+SP
Sbjct: 193 GQKYNHSVDWWSFGVLLYEMLIGQSP 218

>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6 Length = 362

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 6/145 (4%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNIVR   V  +     +V EY  G EL E + N       +      + +  + + 
Sbjct: 72  LRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYC 131
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRL-----SVPGLAYCTDSKSINSSAYVAPETKESK 852
            +  V   D+     ++DG   P L++     S   + +     ++ + AY+APE    K
Sbjct: 132 HAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKK 191
Query: 853 DITEK-GDIYGFGLILIDLLTGKSP 876
           +   K  D++  G+ L  +L G  P
Sbjct: 192 EYDGKVADVWSCGVTLYVMLVGAYP 216

>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3 Length = 361

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 6/145 (4%)
Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           + HPNIVR   V  +     ++ EY  G EL E + N       +      + L  + + 
Sbjct: 73  LRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICNAGRFSEDEARFFFQQLLSGVSYC 132
Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRL-----SVPGLAYCTDSKSINSSAYVAPETKESK 852
            S  +   D+     ++DG   P L++     S   + +     ++ + AY+APE    +
Sbjct: 133 HSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQ 192
Query: 853 DITEK-GDIYGFGLILIDLLTGKSP 876
           +   K  D++  G+ L  +L G  P
Sbjct: 193 EYDGKIADVWSCGVTLYVMLVGAYP 217

>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In A Putative Auto-Inhibition State Length = 340

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 97/206 (47%), Gaps = 24/206 (11%)
Query: 691 RGKKGVSSSYKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV 749
           RG  GV    K+R + +     VK+I   VN+        D+    + +  P  V  +G 
Sbjct: 61  RGAYGVVE--KMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGA 118
Query: 750 CRSEKAAYLVYEYIEG------KELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVV 803
              E   ++  E ++       K++ +  + +  +   K+A+ I KAL   H H   SV+
Sbjct: 119 LFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALE--HLHSKLSVI 176
Query: 804 AGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDS--KSINS--SAYVAPETKESKDITEKG 858
             DV P  V+++   +  +++   G++ Y  DS  K+I++    Y+APE + + ++ +KG
Sbjct: 177 HRDVKPSNVLINALGQ--VKMCDFGISGYLVDSVAKTIDAGCKPYMAPE-RINPELNQKG 233
Query: 859 -----DIYGFGLILIDLLTGKSPADA 879
                DI+  G+ +I+L   + P D+
Sbjct: 234 YSVKSDIWSLGITMIELAILRFPYDS 259

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 22/210 (10%)
Query: 681 SSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIM 739
           SS+  + L   G    ++ YK  +    +   +K++ +D    T S+   ++S   K + 
Sbjct: 3   SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREIS-LMKELK 61
Query: 740 HPNIVRLHGVCRSEKAAYLVYE--------YIEGKELSEVLRNLSWERRRKVAIGIAKAL 791
           H NIVRL+ V  +E    LV+E        Y++ + +    R L     +     + + L
Sbjct: 62  HENIVRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGL 121
Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------TDSKSINSSAYVA 845
            F H      ++  D+ P  ++++ + +  L+L   GLA        T S  + +  Y A
Sbjct: 122 AFCH---ENKILHRDLKPQNLLINKRGQ--LKLGDFGLARAFGIPVNTFSSEVVTLWYRA 176
Query: 846 PET-KESKDITEKGDIYGFGLILIDLLTGK 874
           P+    S+  +   DI+  G IL +++TGK
Sbjct: 177 PDVLMGSRTYSTSIDIWSCGCILAEMITGK 206

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 82/197 (41%), Gaps = 22/197 (11%)
Query: 693 KKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS 752
           +KG    Y ++ L  D   VV +  DV                 L   P + +LH   ++
Sbjct: 40  RKGTEELYAIKILKKD---VVIQDDDVECTMVEK-----RVLALLDKPPFLTQLHSCFQT 91
Query: 753 EKAAYLVYEYIEGKELSEVLRNLSWERRRKV---AIGIAKALRFLHFHCSPSVVAGDVSP 809
               Y V EY+ G +L   ++ +   +  +    A  I+  L FLH      ++  D+  
Sbjct: 92  VDRLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISIGLFFLH---KRGIIYRDLKL 148
Query: 810 GKVIVDGKDEPHLRLSVPGLAY------CTDSKSINSSAYVAPETKESKDITEKGDIYGF 863
             V++D   E H++++  G+         T  +   +  Y+APE    +   +  D + +
Sbjct: 149 DNVMLDS--EGHIKIADFGMCKEHMMDGVTTREFCGTPDYIAPEIIAYQPYGKSVDWWAY 206
Query: 864 GLILIDLLTGKSPADAD 880
           G++L ++L G+ P D +
Sbjct: 207 GVLLYEMLAGQPPFDGE 223

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	966
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-164
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-115
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-73
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-70
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-109
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-108
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-103
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-99
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-98
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-96
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-78
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-90
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-89
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-75
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-83
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-82
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-60
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-69
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-53
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-67
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-67
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-59
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-54
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-59
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-58
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-53
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-49
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-59
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-58
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-50
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-57
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-57
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-56
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-54
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-54
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-53
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-49
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-48
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-46
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-51
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-48
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-48
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-46
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-44
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-41
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-37
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-47
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-44
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-36
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-35
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-33
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-47
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-41
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-40
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-35
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-45
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-45
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-44
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-44
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-45
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-44
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-42
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-42
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-42
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-42
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-41
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-41
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-32
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-30
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-28
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-23
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	2e-40
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-40
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-37
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-36
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-35
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-39
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-35
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-39
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-39
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-39
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-36
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-35
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-31
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-37
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-35
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-30
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-37
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-34
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-36
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-33
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-31
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	4e-35
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-30
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-24
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	5e-34
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-34
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-28
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-28
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-27
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-33
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-30
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-28
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-28
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-27
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-27
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-27
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-23
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-27
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-23
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
3soc_A	322	Activin receptor type-2A; structural genomics cons	4e-26
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-26
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-23
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-24
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-24
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-21
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	6e-24
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	8e-24
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-23
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-09
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	7e-23
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	8e-23
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	3e-22
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	3e-22
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-18
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-10
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	4e-20
3q4u_A	301	Activin receptor type-1; structural genomics conso	7e-20
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-19
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-19
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	7e-19
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	3e-18
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	7e-18
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-18
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
3uqc_A	286	Probable conserved transmembrane protein; structur	1e-17
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	3e-17
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	5e-17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-05
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-12
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-13
3ork_A	311	Serine/threonine protein kinase; structural genomi	4e-16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-15
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	2e-15
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-15
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	8e-14
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	1e-13
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	3e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-10
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	4e-13
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	6e-13
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	1e-12
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	4e-12
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	1e-11
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	1e-11
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-11
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-11
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	3e-11
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	5e-11
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	5e-11
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	6e-11
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	6e-11
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	7e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-05
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	2e-10
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-10
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	2e-10
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	2e-10
3bhy_A	283	Death-associated protein kinase 3; death associate	2e-10
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	3e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-04
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	6e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	8e-10
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	8e-10
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	8e-10
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	9e-10
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	1e-09
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-09
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	1e-09
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-09
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-09
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	2e-09
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	2e-09
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	3e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	6e-09
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	7e-09
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	7e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-08
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	7e-09
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	7e-09
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	7e-09
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	8e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-05
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	1e-08
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-08
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	1e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
2a19_B	284	Interferon-induced, double-stranded RNA-activated	2e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-07
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	2e-08
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	3e-08
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	3e-08
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	4e-08
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	4e-08
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	4e-08
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	5e-08
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	5e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	8e-08
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	9e-08
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	9e-08
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	9e-08
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	1e-07
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	1e-07
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	2e-07
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	2e-07
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	2e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	8e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	9e-05
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	3e-07
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	5e-07
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	7e-07
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	8e-07
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	8e-07
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	8e-07
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	8e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-05
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	1e-06
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	1e-06
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	1e-06
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	1e-06
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	1e-06
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	1e-06
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-06
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	2e-06
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-06
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-06
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	2e-06
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	2e-06
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	2e-06
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	2e-06
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	3e-06
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	4e-06
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	5e-06
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	5e-06
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	6e-06
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	7e-06
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	8e-06
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	9e-06
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	9e-06
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	1e-05
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	1e-05
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	1e-05
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	1e-05
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	1e-05
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-05
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	2e-05
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	2e-05
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	2e-05
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-05
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	2e-05
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-05
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-05
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	3e-05
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	3e-05
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	3e-05
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	4e-05
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	4e-05
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	4e-05
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	4e-05
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	4e-05
3pls_A	298	Macrophage-stimulating protein receptor; protein k	5e-05
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	5e-05
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	5e-05
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	6e-05
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	7e-05
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	7e-05
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	7e-05
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	8e-05
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	8e-05
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	8e-05
2dyl_A	318	Dual specificity mitogen-activated protein kinase	9e-05
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	1e-04
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	1e-04
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	1e-04
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-04
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	1e-04
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	2e-04
4aoj_A	329	High affinity nerve growth factor receptor; transf	2e-04
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	2e-04
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	2e-04
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	2e-04
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	2e-04
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	3e-04
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	3e-04
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	3e-04
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	3e-04
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	3e-04
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	4e-04
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	4e-04
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	4e-04
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	4e-04
3o0g_A	292	Cell division protein kinase 5; kinase activator c	4e-04
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	4e-04
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	4e-04
3niz_A	311	Rhodanese family protein; structural genomics, str	5e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	5e-04
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	6e-04
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	7e-04
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	7e-04
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  571 bits (1474), Expect = 0.0
 Identities = 180/573 (31%), Positives = 284/573 (49%), Gaps = 19/573 (3%)

Query: 55  ISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRF 114
           +      ++  +++S+ N S  I   +     ++ +++S N+LSG+    I + +  L+ 
Sbjct: 194 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE-LKL 251

Query: 115 LNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEI-GSFSGLKVLDLGGNVLVGEIP 173
           LN+S+N F GP+P   L  L+ L L+ N  +G+IP+ + G+   L  LDL GN   G +P
Sbjct: 252 LNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

Query: 174 LSISNITSLQIFTLASNQLIGSIPRE-IGQLRNLKWIYLGYNNLSGEIPKEIGDLT-SLN 231
               + + L+   L+SN   G +P + + ++R LK + L +N  SGE+P+ + +L+ SL 
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371

Query: 232 HLDLVYNNLTGQIPPSFGN--LSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLS 289
            LDL  NN +G I P+      + L+ L+L  N  TG IP ++     LVS  LS NYLS
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431

Query: 290 GEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNN 349
           G IP  +  L  L  L L+ N   G+IP  L  +  L+ L L  N  +GEIPS L    N
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491

Query: 350 LTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLS 409
           L  I LS N LTG+IP+ +    +L  L L +NS  G IP  L  C+SL  + L  N  +
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551

Query: 410 GELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGN--NFSGKLPDSFGS- 466
           G + +   +        I+ N ++G+           +  + AGN   F G   +     
Sbjct: 552 GTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607

Query: 467 DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQ 526
                 +++   + G    +F     +M L +S N L G IP+E+ S   L  L+L +N 
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667

Query: 527 LSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFL 586
           +SG IP  + ++  L  LDLS N+L G+IPQ +  +  L ++++S+N+  G +P  G F 
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727

Query: 587 AINATAVAGND-LCGGDSTSGLPPCKGNKKNQT 618
                    N  LCG      LP C  +  +  
Sbjct: 728 TFPPAKFLNNPGLCG----YPLPRCDPSNADGY 756

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  557 bits (1437), Expect = 0.0
 Identities = 186/596 (31%), Positives = 296/596 (49%), Gaps = 26/596 (4%)

Query: 11  LFLSFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSA 70
              S       E+  L+SFK  + D  N L +W S+   C ++G++C     V +I+LS+
Sbjct: 2   FQASPSQSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTC-RDDKVTSIDLSS 59

Query: 71  KNIS---GKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP 127
           K ++     +SSS+  L  +ES+ LS++ ++G +    F  S SL  L+LS N+ +GPV 
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVT 117

Query: 128 ----IGSLSRLEILDLSNNMLSGKIPEEIG-SFSGLKVLDLGGNVLVGEIPLSI---SNI 179
               +GS S L+ L++S+N L        G   + L+VLDL  N + G   +        
Sbjct: 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177

Query: 180 TSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNN 239
             L+   ++ N++ G +   + +  NL+++ +  NN S  IP  +GD ++L HLD+  N 
Sbjct: 178 GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNK 234

Query: 240 LTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVI-Q 298
           L+G    +    + L+ L +  N+  G IP     LKSL    L++N  +GEIP+ +   
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGA 292

Query: 299 LQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIP-SNLGKQNNLTVIDLST 357
              L  L L  N+F G +P    S   L+ L L SN FSGE+P   L K   L V+DLS 
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352

Query: 358 NFLTGKIPETLCD-SGSLFKLILFSNSLEGKIPNSL--STCKSLRRVRLQNNRLSGELSS 414
           N  +G++PE+L + S SL  L L SN+  G I  +L  +   +L+ + LQNN  +G++  
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412

Query: 415 EFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSD-QLENLD 473
             +    +  L +S N LSG I      ++ L+ L L  N   G++P        LE L 
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472

Query: 474 LSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPA 533
           L  N  +G IP      + L  + +S N+L G+IP+ +   + L  L LSNN  SG+IPA
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

Query: 534 SLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAIN 589
            L +   L  LDL+ N  +G IP  + + +  +  N      +  + + G     +
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  499 bits (1286), Expect = e-164
 Identities = 168/526 (31%), Positives = 262/526 (49%), Gaps = 18/526 (3%)

Query: 68  LSAKNISGKISSSIF-HLPHVESINLSSNQLSGEIPSDIFSSSN--SLRFLNLSNNNFTG 124
           +S+  +      S    L  +E ++LS+N +SG        S     L+ L +S N  +G
Sbjct: 133 VSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 192

Query: 125 PVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQI 184
            V +     LE LD+S+N  S  IP  +G  S L+ LD+ GN L G+   +IS  T L++
Sbjct: 193 DVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251

Query: 185 FTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLTGQ 243
             ++SNQ +G IP     L++L+++ L  N  +GEIP  + G   +L  LDL  N+  G 
Sbjct: 252 LNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 244 IPPSFGNLSNLRYLFLYQNKLTGSIPKSILG-LKSLVSFDLSDNYLSGEIPEEVIQL-QN 301
           +PP FG+ S L  L L  N  +G +P   L  ++ L   DLS N  SGE+PE +  L  +
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 302 LEILHLFSNNFTGKIPSSLASMPK--LQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNF 359
           L  L L SNNF+G I  +L   PK  LQ L L +N F+G+IP  L   + L  + LS N+
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 360 LTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRL 419
           L+G IP +L     L  L L+ N LEG+IP  L   K+L  + L  N L+GE+ S  +  
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489

Query: 420 PLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENR 478
             + ++ +S N L+G I +    + +L +L L+ N+FSG +P   G    L  LDL+ N 
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549

Query: 479 FSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNN--QLSGHIPASLS 536
           F+GTIP +  + S  +    + N + G     + +         + N  +  G     L+
Sbjct: 550 FNGTIPAAMFKQSGKI----AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605

Query: 537 EMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST 582
            +      +++     G    T     S++ +++S+N   G +P  
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  367 bits (945), Expect = e-115
 Identities = 90/582 (15%), Positives = 189/582 (32%), Gaps = 57/582 (9%)

Query: 37  YNFLSNWDSSVTFCKWN---GISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLS 93
               +NW+ +     W    G+S  ++  V  + L     SG++  +I  L  +E + L 
Sbjct: 54  TQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALG 113

Query: 94  SNQLSGEIPSDIFSS---SNSLRFLNLSNNNFTGP----VPIGSLSRLEILDLSNNMLSG 146
           S+                + S         ++        P    S L    ++++    
Sbjct: 114 SHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173

Query: 147 KIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNL 206
            I +          +    N +   +  ++  +T L+ F + ++  +     E  +  N 
Sbjct: 174 SIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS 232

Query: 207 KWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLT- 265
           +     Y         +  +L  L  +++       ++P     L  ++ + +  N+   
Sbjct: 233 E-----YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

Query: 266 -------GSIPKSILGLKSLVSFDLSDNYL-SGEIPEEVIQLQNLEILHLFSNNFTGKIP 317
                            + +    +  N L +  +   + +++ L +L    N   GK+P
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

Query: 318 SSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSG--SLF 375
            +  S  KL  L L  NQ +    +  G    +  +  + N L   IP          + 
Sbjct: 348 -AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMS 405

Query: 376 KLILFSNSLEG-------KIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDIS 428
            +    N +          +  +     ++  + L NN++S      F+    +  +++ 
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465

Query: 429 GNDLSG-------RIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENL---DLSENR 478
           GN L+           E       L  ++L  N  +  L D F +  L  L   DLS N 
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNS 524

Query: 479 FSGTIPRSFGRLSELMQLKI------SRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIP 532
           FS   P      S L    I        N+   + PE ++ C  L  L + +N +   + 
Sbjct: 525 FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VN 582

Query: 533 ASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNH 574
             +   P +  LD+ +N         +          + ++ 
Sbjct: 583 EKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  252 bits (646), Expect = 5e-73
 Identities = 65/471 (13%), Positives = 144/471 (30%), Gaps = 99/471 (21%)

Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVG----EIPLSISNITS 181
           V + S  R+  L L     SG++P+ IG  + L+VL LG +          P  IS   S
Sbjct: 75  VSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 182 LQIFTLASNQLIGSIPREIG--QLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNN 239
            +           +           +L    +  +     I K          +  + NN
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 240 LTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQL 299
           +T  +  +   L+ LR  ++  +             ++                 +   L
Sbjct: 195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWDNL 248

Query: 300 QNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNF 359
           ++L  + +++     K+P+ L ++P++Q++                        +++ N 
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLI------------------------NVACNR 284

Query: 360 LTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRL-SGELSSEFTR 418
                                    + +        + ++ + +  N L +  + +   +
Sbjct: 285 GIS----------------GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 419 LPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSEN 477
           +                          L ML    N   G    +FGS  +L +L+L+ N
Sbjct: 329 M------------------------KKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYN 363

Query: 478 RFSGTIPRSFGRLSELMQLKISRNKLFGDIPE--ELSSCKKLVSLDLSNNQLSGHIPASL 535
           + +       G   ++  L  + NKL   IP   +  S   + ++D S N++      + 
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422

Query: 536 SEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFL 586
                              +  T  +  ++  +N+S+N          +  
Sbjct: 423 DP-----------------LDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  244 bits (626), Expect = 3e-70
 Identities = 64/390 (16%), Positives = 135/390 (34%), Gaps = 43/390 (11%)

Query: 66  IELSAKNISGKISSSIFHLPHVESINLSSNQL--------SGEIPSDIFSSSNSLRFLNL 117
           +E+       K+ + +  LP ++ IN++ N+           +  +D       ++ + +
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK-IQIIYI 312

Query: 118 SNNNF-TGPVP--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPL 174
             NN  T PV   +  + +L +L+   N L G      GS   L  L+L  N +      
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPAN 371

Query: 175 SISNITSLQIFTLASNQLIGSIPR--EIGQLRNLKWIYLGYNNLSG-------EIPKEIG 225
                  ++  + A N+L   IP   +   +  +  I   YN +          +     
Sbjct: 372 FCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 226 DLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTG-------SIPKSILGLKSL 278
              +++ ++L  N ++      F   S L  + L  N LT           ++      L
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 279 VSFDLSDNYLSGEIPEEVI--QLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLW---- 332
            S DL  N L+  + ++     L  L  + L  N+F+   P+   +   L+   +     
Sbjct: 491 TSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD 548

Query: 333 --SNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPN 390
              N+   E P  +    +LT + + +N +   + E +  +  +  L +  N       +
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITPN--ISVLDIKDNPNISIDLS 605

Query: 391 SLSTCKSLRRVRLQNNRLSGELSSEFTRLP 420
            +          L  ++       +   + 
Sbjct: 606 YVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  160 bits (408), Expect = 2e-41
 Identities = 45/219 (20%), Positives = 84/219 (38%), Gaps = 23/219 (10%)

Query: 64  NAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFT 123
           N I          +  + F   +V SINLS+NQ+S   P ++FS+ + L  +NL  N  T
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT 470

Query: 124 G---------PVPIGSLSRLEILDLSNNMLSGKIPEEI--GSFSGLKVLDLGGNVLVGEI 172
                          +   L  +DL  N L+  + ++    +   L  +DL  N    + 
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSF-SKF 528

Query: 173 PLSISNITSLQIFTL------ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGD 226
           P    N ++L+ F +        N+ +   P  I    +L  + +G N++   + ++I  
Sbjct: 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI-- 585

Query: 227 LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLT 265
             +++ LD+  N                    L+ +K  
Sbjct: 586 TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  351 bits (903), Expect = e-109
 Identities = 124/589 (21%), Positives = 219/589 (37%), Gaps = 36/589 (6%)

Query: 56  SCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFL 115
            CQ    +  + L    +S     +     ++  ++L SN +   I ++ F    +L  L
Sbjct: 68  LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITL 126

Query: 116 NLSNNNFTGPVP--IGSLSRLEILDLSNNMLSGKIPEEIGSF--SGLKVLDLGGNVLVGE 171
           +LS+N  +         L  L+ L LSNN +     EE+  F  S LK L+L  N +   
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186

Query: 172 IPLSISNITSLQIFTLASNQLIGSIPREIG---QLRNLKWIYLGYNNLSGEIPKEIGDL- 227
            P     I  L    L + QL  S+  ++       +++ + L  + LS         L 
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246

Query: 228 -TSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDN 286
            T+L  LDL YNNL      SF  L  L Y FL  N +      S+ GL ++   +L  +
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

Query: 287 YLSGEIPEEVIQ---------LQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS 337
           +    I    +          L+ LE L++  N+  G   +    +  L+ L L ++  S
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 338 GEIPSNLG----KQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIP-NSL 392
               +N        + L +++L+ N ++    +     G L  L L  N +  ++     
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426

Query: 393 STCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSG--RIGEQKWEMTSLQMLN 450
              +++  + L  N+      + F  +P +  L +    L            + +L +L+
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486

Query: 451 LAGNNFSGKLPDSFGS-DQLENLDLSENRFS--------GTIPRSFGRLSELMQLKISRN 501
           L+ NN +    D     ++LE LDL  N  +        G        LS L  L +  N
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

Query: 502 KLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGR 561
                  E      +L  +DL  N L+    +  +    L  L+L +N ++    +  G 
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606

Query: 562 V-ASLVQVNISHNHFHGSLPSTGAFLAINATAVAGNDLCGGDSTSGLPP 609
              +L ++++  N F  +  S   F+                     PP
Sbjct: 607 AFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPP 655

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  349 bits (898), Expect = e-108
 Identities = 108/557 (19%), Positives = 202/557 (36%), Gaps = 35/557 (6%)

Query: 60  STHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSN 119
            T++  + L+   +    +++      + S+++  N +S  +  ++      L+ LNL +
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQH 82

Query: 120 NNFTGPVP--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSIS 177
           N  +          + L  L L +N +             L  LDL  N L      +  
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142

Query: 178 NITSLQIFTLASNQLIGSIPREIG--QLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDL 235
            + +LQ   L++N++      E+      +LK + L  N +    P     +  L  L L
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202

Query: 236 VYNNLTGQIPPSFG---NLSNLRYLFLYQNKLTGSIPKSILGLK--SLVSFDLSDNYLSG 290
               L   +          +++R L L  ++L+ +   + LGLK  +L   DLS N L+ 
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262

Query: 291 EIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSN------- 343
              +    L  LE   L  NN       SL  +  ++ L L  +     I          
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322

Query: 344 --LGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLS----TCKS 397
                   L  +++  N + G          +L  L L ++    +   + +        
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

Query: 398 LRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWE-MTSLQMLNLAGNNF 456
           L  + L  N++S   S  F+ L  +  LD+  N++   +  Q+W  + ++  + L+ N +
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 457 SGKLPDSFGS-DQLENLDLSENRFSG--TIPRSFGRLSELMQLKISRNKLFGDIPEELSS 513
                +SF     L+ L L         + P  F  L  L  L +S N +     + L  
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502

Query: 514 CKKLVSLDLSNNQLS--------GHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASL 565
            +KL  LDL +N L+        G     L  +  L  L+L  N       +    +  L
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562

Query: 566 VQVNISHNHFHGSLPST 582
             +++  N+ +    S 
Sbjct: 563 KIIDLGLNNLNTLPASV 579

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  337 bits (866), Expect = e-103
 Identities = 104/498 (20%), Positives = 193/498 (38%), Gaps = 25/498 (5%)

Query: 109 SNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVL 168
           + S    + S+   T  VP    + + +L+L++N L          +S L  LD+G N +
Sbjct: 3   TVSHEVADCSHLKLTQ-VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 169 VGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLT 228
               P     +  L++  L  N+L     +      NL  ++L  N++            
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 229 SLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPK--SILGLKSLVSFDLSDN 286
           +L  LDL +N L+     +   L NL+ L L  NK+     +   I    SL   +LS N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 287 YLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLA---SMPKLQVLQLWSNQFSGEIPSN 343
            +    P     +  L  L L +      +   L    +   ++ L L ++Q S    + 
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 344 LG--KQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRV 401
               K  NLT++DLS N L     ++      L    L  N+++    +SL    ++R +
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 402 RLQNNRLSGELS---------SEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLA 452
            L+ +     +S           F  L  +  L++  ND+ G        + +L+ L+L+
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361

Query: 453 GNNFS-----GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDI 507
            +  S      +   S     L  L+L++N+ S     +F  L  L  L +  N++  ++
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

Query: 508 P-EELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSG--KIPQTLGRVAS 564
             +E    + +  + LS N+       S + +P L +L L    L      P     + +
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

Query: 565 LVQVNISHNHFHGSLPST 582
           L  +++S+N+        
Sbjct: 482 LTILDLSNNNIANINDDM 499

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  281 bits (721), Expect = 5e-83
 Identities = 105/502 (20%), Positives = 183/502 (36%), Gaps = 37/502 (7%)

Query: 66  IELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSN--SLRFLNLSNNNFT 123
           +ELS+  I          +  +  + L++ QL   +   +       S+R L+LSN+  +
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 124 GPVPIG----SLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNI 179
                       + L +LDLS N L+    +       L+   L  N +      S+  +
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 180 TSLQIFTLASNQLIGSI---------PREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSL 230
            +++   L  +    SI               L+ L+ + +  N++ G        L +L
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 231 NHLDLVYNNLTGQIPPS--FGNL--SNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDN 286
            +L L  +  + +   +  F +L  S L  L L +NK++     +   L  L   DL  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 287 YLSGEIPEEVIQ-LQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSG--EIPSN 343
            +  E+  +  + L+N+  ++L  N +     +S A +P LQ L L           PS 
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 344 LGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLE--------GKIPNSLSTC 395
                NLT++DLS N +     + L     L  L L  N+L         G     L   
Sbjct: 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535

Query: 396 KSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNN 455
             L  + L++N         F  L  +  +D+  N+L+           SL+ LNL  N 
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 456 FSGKLPDSFGS--DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDI----PE 509
            +      FG     L  LD+  N F  T       ++ + +   +  +L        P 
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPP 655

Query: 510 ELSSCKKLVSLDLSNNQLSGHI 531
                  +   D S+ + S H 
Sbjct: 656 HYHG-FPVRLFDTSSCKDSAHH 676

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  211 bits (538), Expect = 6e-58
 Identities = 79/346 (22%), Positives = 131/346 (37%), Gaps = 22/346 (6%)

Query: 37  YNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQ 96
            +F     S  +  K +  S Q    +  + +   +I G  S+    L +++ ++LS++ 
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 97  LS-GEIPSDIFSS--SNSLRFLNLSNNNFTGPVP--IGSLSRLEILDLSNNMLSGKIP-E 150
            S   + ++ F S   + L  LNL+ N  +         L  LE+LDL  N +  ++  +
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 151 EIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQL--IGSIPREIGQLRNLKW 208
           E      +  + L  N  +     S + + SLQ   L    L  + S P     LRNL  
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484

Query: 209 IYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLT--------GQIPPSFGNLSNLRYLFLY 260
           + L  NN++      +  L  L  LDL +NNL         G        LS+L  L L 
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 261 QNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSL 320
            N       +    L  L   DL  N L+           +L+ L+L  N  T       
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604

Query: 321 A-SMPKLQVLQLWSNQFSGEIPS-----NLGKQNNLTVIDLSTNFL 360
             +   L  L +  N F     S     N   + +  + +LS+++L
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYL 650

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  108 bits (273), Expect = 1e-24
 Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 1/144 (0%)

Query: 444 TSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNK 502
           T++ +LNL  N        +F    QL +LD+  N  S   P    +L  L  L +  N+
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 503 LFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRV 562
           L     +  + C  L  L L +N +         +   L  LDLS N LS     T  ++
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 563 ASLVQVNISHNHFHGSLPSTGAFL 586
            +L ++ +S+N             
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIF 168

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 5e-07
 Identities = 19/115 (16%), Positives = 42/115 (36%), Gaps = 11/115 (9%)

Query: 56  SCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFL 115
             ++   +  I+L   N++   +S   +   ++S+NL  N ++         +  +L  L
Sbjct: 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614

Query: 116 NLSNNNFTGPVPIGS-------LSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDL 163
           ++  N F       +        +   I +LS++ L    P     + G  V   
Sbjct: 615 DMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPP----HYHGFPVRLF 665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  331 bits (850), Expect = 1e-99
 Identities = 87/585 (14%), Positives = 181/585 (30%), Gaps = 91/585 (15%)

Query: 28  SFKSTVNDPYNFLSNWDSSVTFCKWN---GISCQNSTHVNAIELSAKNISGKISSSIFHL 84
            + S   +      NW+ +     W    G+   N+  V  + L+     G++  +I  L
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQL 346

Query: 85  PHVESINLSSNQLSG------------------------EIPSDIFSSSNSLRFLNLSNN 120
             ++ ++  ++  +                                     L   +L  +
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406

Query: 121 NFTGPVPIGSLSRLEILDLSNNMLSG------KIPEEIGSFSGLKVLDLGGNVLVGEIPL 174
                  +  + +   + L +  +         I + I   + L+++    +    +   
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA 466

Query: 175 SISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLD 234
                   +       +   +       L++L  + L       ++P  + DL  L  L+
Sbjct: 467 -----VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521

Query: 235 LVYNNLTG---------QIPPSFGNLSNLRYLFLYQNKLTGSIPKSILG-LKSLVSFDLS 284
           +  N             ++         ++  ++  N L      + L  +  L   D  
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

Query: 285 DNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSL-ASMPKLQVLQLWSNQFSGEIPSN 343
            N +     E       L  L L  N     IP    A   +++ L    N+    IP+ 
Sbjct: 582 HNKVR--HLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637

Query: 344 LGKQN--NLTVIDLSTNFLTGKIPETLCDSG-----SLFKLILFSNSLEGKIPNSLSTCK 396
              ++   +  +D S N +  +     C        +   + L  N ++       +T  
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697

Query: 397 SLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNF 456
            +  + L NN +        T +P        GN  +            L  ++L  N  
Sbjct: 698 PISTIILSNNLM--------TSIPENSLKPKDGNYKN---------TYLLTTIDLRFNKL 740

Query: 457 SGKLPDSFGSDQLENL---DLSENRFSGTIPRSFGRLSELMQLKISR------NKLFGDI 507
           +  L D F +  L  L   D+S N FS + P      S+L    I        N++    
Sbjct: 741 TS-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798

Query: 508 PEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLS 552
           P  +++C  L+ L + +N +   +   L   P L  LD+++N   
Sbjct: 799 PTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  225 bits (575), Expect = 8e-62
 Identities = 62/397 (15%), Positives = 134/397 (33%), Gaps = 45/397 (11%)

Query: 59  NSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPS--------DIFSSSN 110
           N   +  +EL       ++   ++ LP ++S+N++ N+               D   +  
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 111 SLRFLNLSNNNFTG---PVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNV 167
            ++   +  NN         +  + +L +LD  +N +     E  G+   L  L L  N 
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQ 606

Query: 168 LVGEIPLSI-SNITSLQIFTLASNQLIGSIPR--EIGQLRNLKWIYLGYNNLSGEIPKEI 224
           +  EIP    +    ++    + N+L   IP       +  +  +   YN +     + I
Sbjct: 607 IE-EIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNI 663

Query: 225 GD------LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLT-------GSIPKS 271
                     + + + L YN +       F   S +  + L  N +T            +
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 272 ILGLKSLVSFDLSDNYLSGEIPEEVI--QLQNLEILHLFSNNFTGKIPSSLASMPKLQVL 329
                 L + DL  N L+  + ++     L  L  + +  N F+   P+   +  +L+  
Sbjct: 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781

Query: 330 QL------WSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNS 383
            +        N+   + P+ +    +L  + + +N +  K+ E L     L+ L +  N 
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQ--LYILDIADNP 838

Query: 384 LEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLP 420
                  S+          L  ++       +   + 
Sbjct: 839 NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  208 bits (530), Expect = 7e-56
 Identities = 66/401 (16%), Positives = 131/401 (32%), Gaps = 37/401 (9%)

Query: 212 GYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKS 271
             +    +   ++ +   +  L L      G++P + G L+ L+ L    +  T S    
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366

Query: 272 ILGLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSNNFT-----GKIPSSLASMPK 325
                +    +   + +     +  +   Q L +  L  +          I        K
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLK 426

Query: 326 LQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLE 385
              +   +N+ +  I   + +   L +I  + +  T                        
Sbjct: 427 DTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAKQY 480

Query: 386 GKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSG---------RI 436
                S S  K L  V L N     +L      LP +  L+I+ N             R+
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540

Query: 437 GEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENL---DLSENRFSGTIPRSFGRLSEL 493
            + +     +Q+  +  NN     P S    ++  L   D   N+       +FG   +L
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKL 597

Query: 494 MQLKISRNKLFGDIPEEL-SSCKKLVSLDLSNNQLSGHIP--ASLSEMPVLGQLDLSENQ 550
             LK+  N++  +IPE+  +   ++  L  S+N+L   IP   +   + V+G +D S N+
Sbjct: 598 TDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNK 655

Query: 551 LSGKIPQTLG-----RVASLVQVNISHNHFHGSLPSTGAFL 586
           +  +           +  +   V +S+N          A  
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  123 bits (309), Expect = 1e-28
 Identities = 51/401 (12%), Positives = 119/401 (29%), Gaps = 41/401 (10%)

Query: 201 GQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLY 260
                LK + + Y   S E         +  ++D+        +    G    + Y    
Sbjct: 168 RVTTELKGMKVTYKEDSKEHQNPDN--ANDKYMDIGVATCDSAVWLPAGTYQVVAYTTYS 225

Query: 261 QNKLTGSIPKSILGLKSLVSFDLSDNYLSGE------IPEEVIQLQNLEILHLFSNNFTG 314
           Q+ +  S  ++        SF + DN L+ +      + E    +++ + L        G
Sbjct: 226 QSGIKRSELET--QSVRGESFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDG 283

Query: 315 KIPSSLASMPKLQVLQLW------SNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETL 368
           K     +      +  L        + +  +   +L     +T + L+     G++P+ +
Sbjct: 284 KNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAI 343

Query: 369 CDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEF-TRLPLVYFLDI 427
                L  L   ++S             +      + +R+       F      +   D+
Sbjct: 344 GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403

Query: 428 SGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSF 487
             + ++                            DS  S +   +    NR +  I ++ 
Sbjct: 404 LQDAINR------------------NPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAI 444

Query: 488 GRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLS 547
            RL++L  +  + +    D              +    +   +   S S +  L  ++L 
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 548 ENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAI 588
                 ++P  L  +  L  +NI+ N    +      +  +
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  320 bits (821), Expect = 4e-98
 Identities = 113/535 (21%), Positives = 181/535 (33%), Gaps = 49/535 (9%)

Query: 89  SINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--IGSLSRLEILDLSNNMLSG 146
           +          +IP ++  S    + L+LS N           S   L++LDLS   +  
Sbjct: 11  TYQCMELNFY-KIPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 147 KIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNL 206
                  S S L  L L GN +      + S ++SLQ        L       IG L+ L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 207 KWIYLGYNNL-SGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRY----LFLYQ 261
           K + + +N + S ++P+   +LT+L HLDL  N +          L  +      L L  
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 262 NKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSNNFTGK----- 315
           N +   I         L    L +N+ S  + +  IQ L  LE+  L    F  +     
Sbjct: 187 NPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 316 -IPSSLASMPKLQVLQLWSNQ---FSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDS 371
              S+L  +  L + +        +  +I        N++   L +  +      +    
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN-- 303

Query: 372 GSLFKLILFSNSLE-------------------GKIPNSLSTCKSLRRVRLQNNRLS--G 410
                L L +                       G    S     SL  + L  N LS  G
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 411 ELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSD--Q 468
             S        + +LD+S N +          +  L+ L+   +N       S       
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 469 LENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDI-PEELSSCKKLVSLDLSNNQL 527
           L  LD+S           F  LS L  LK++ N    +  P+  +  + L  LDLS  QL
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 528 SGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST 582
               P + + +  L  L++S N            + SL  ++ S NH   S    
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  314 bits (806), Expect = 6e-96
 Identities = 112/545 (20%), Positives = 192/545 (35%), Gaps = 33/545 (6%)

Query: 60  STHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSN 119
                 ++LS   +    S S F  P ++ ++LS  ++   I    + S + L  L L+ 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTG 85

Query: 120 NNFTGPVP--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVG-EIPLSI 176
           N            LS L+ L      L+      IG    LK L++  N++   ++P   
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 177 SNITSLQIFTLASNQLIGSIPREIGQLRNLK----WIYLGYNNLSGEIPKEIGDLTSLNH 232
           SN+T+L+   L+SN++      ++  L  +      + L  N ++  I         L+ 
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHK 204

Query: 233 LDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSI---PKSILGLKSLVSFDLSDNYL 288
           L L  N  +  +       L+ L    L   +              L+ L +  + +  L
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 289 S------GEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPS 342
           +       +I +    L N+    L S           +     Q L+L + +F      
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTL 322

Query: 343 NLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSL--EGKIPNSLSTCKSLRR 400
            L     LT               +  D  SL  L L  N L  +G    S     SL+ 
Sbjct: 323 KLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 401 VRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKW-EMTSLQMLNLAGNNFSGK 459
           + L  N +   +SS F  L  +  LD   ++L        +  + +L  L+++  +    
Sbjct: 378 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 460 LPDSFGS-DQLENLDLSENRFSGTI-PRSFGRLSELMQLKISRNKLFGDIPEELSSCKKL 517
               F     LE L ++ N F     P  F  L  L  L +S+ +L    P   +S   L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 518 VSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVA-SLVQVNISHNHFH 576
             L++S+N            +  L  LD S N +     Q L     SL  +N++ N F 
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

Query: 577 GSLPS 581
            +   
Sbjct: 557 CTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  265 bits (679), Expect = 6e-78
 Identities = 102/514 (19%), Positives = 179/514 (34%), Gaps = 34/514 (6%)

Query: 58  QNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNL 117
              + +  +     N++   +  I HL  ++ +N++ N +      + FS+  +L  L+L
Sbjct: 97  SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 118 SNNNFTGPVP--IGSLSRLEI----LDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGE 171
           S+N         +  L ++ +    LDLS N ++   P        L  L L  N     
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLN 215

Query: 172 IP-LSISNITSLQIFTLASNQLIGSIPRE---IGQLRNLKWIYLGYNNLS------GEIP 221
           +    I  +  L++  L   +       E      L  L  + +    L+       +I 
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 222 KEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSF 281
                LT+++   LV   +       F      ++L L   K        +  LK L   
Sbjct: 276 DLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL--- 330

Query: 282 DLSDNYLSGEIPEEVIQLQNLEILHLFSN--NFTGKIPSSLASMPKLQVLQLWSNQFSGE 339
             + N       E  + L +LE L L  N  +F G    S      L+ L L  N     
Sbjct: 331 TFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT- 387

Query: 340 IPSNLGKQNNLTVIDLSTNFLTGKIP-ETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSL 398
           + SN      L  +D   + L             +L  L +             +   SL
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 399 RRVRLQNNRLSGELSSE-FTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFS 457
             +++  N        + FT L  + FLD+S   L          ++SLQ+LN++ NNF 
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 458 GKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRL-SELMQLKISRNKLFGDIPEE--LSS 513
                 +   + L+ LD S N    +  +      S L  L +++N        +  L  
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 567

Query: 514 CKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLS 547
            K    L +   ++    P+    MPVL  L+++
Sbjct: 568 IKDQRQLLVEVERMECATPSDKQGMPVL-SLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  196 bits (499), Expect = 3e-53
 Identities = 64/386 (16%), Positives = 118/386 (30%), Gaps = 43/386 (11%)

Query: 213 YNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI 272
             N   +IP  +    S  +LDL +N L      SF +   L+ L L + ++      + 
Sbjct: 16  ELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 273 LGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLW 332
             L  L +  L+ N +          L +L+ L     N        +  +  L+ L + 
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 333 SNQF-SGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSL----FKLILFSNSLEGK 387
            N   S ++P       NL  +DLS+N +       L     +      L L  N +   
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELSSE-FTRLPLVYFLDISGNDLSGRIGEQKWEMTSL 446
            P +      L ++ L+NN  S  +       L  +    +   +               
Sbjct: 193 QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE----------- 240

Query: 447 QMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFS------GTIPRSFGRLSELMQLKISR 500
                   N       +     L NL + E R +        I   F  L+ +    +  
Sbjct: 241 -------GNLEKFDKSALEG--LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 501 NKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLG 560
             +     ++ S       L+L N +        L  +       L+     G    +  
Sbjct: 292 VTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSL-----KRLTFTSNKGGNAFSEV 344

Query: 561 RVASLVQVNISHNHFHGSLPSTGAFL 586
            + SL  +++S N        + +  
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDF 370

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  306 bits (787), Expect = 7e-97
 Identities = 92/311 (29%), Positives = 146/311 (46%), Gaps = 16/311 (5%)

Query: 18  CHGAELELLLSFKSTVNDPYNFLSNWDSSVTFC--KWNGISC---QNSTHVNAIELSAKN 72
           C+  + + LL  K  + +P   LS+W  +   C   W G+ C     +  VN ++LS  N
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 73  ISG--KISSSIFHLPHVESINLSS-NQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP-- 127
           +     I SS+ +LP++  + +   N L G IP  I   +  L +L +++ N +G +P  
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDF 120

Query: 128 IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSL-QIFT 186
           +  +  L  LD S N LSG +P  I S   L  +   GN + G IP S  + + L    T
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180

Query: 187 LASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP 246
           ++ N+L G IP     L NL ++ L  N L G+     G   +   + L  N+L   +  
Sbjct: 181 ISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-G 238

Query: 247 SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILH 306
             G   NL  L L  N++ G++P+ +  LK L S ++S N L GEIP+    LQ  ++  
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSA 297

Query: 307 LFSNNFTGKIP 317
             +N      P
Sbjct: 298 YANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  273 bits (701), Expect = 2e-84
 Identities = 82/279 (29%), Positives = 127/279 (45%), Gaps = 8/279 (2%)

Query: 137 LDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGE--IPLSISNITSLQIFTLAS-NQLI 193
            D  N    G + +       +  LDL G  L     IP S++N+  L    +   N L+
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 194 GSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSN 253
           G IP  I +L  L ++Y+ + N+SG IP  +  + +L  LD  YN L+G +PPS  +L N
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 254 LRYLFLYQNKLTGSIPKSILGLKSLVSF-DLSDNYLSGEIPEEVIQLQNLEILHLFSNNF 312
           L  +    N+++G+IP S      L +   +S N L+G+IP     L NL  + L  N  
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209

Query: 313 TGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSG 372
            G       S    Q + L  N  + ++   +G   NL  +DL  N + G +P+ L    
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 373 SLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNR-LSG 410
            L  L +  N+L G+IP   +  +        NN+ L G
Sbjct: 269 FLHSLNVSFNNLCGEIPQGGN-LQRFDVSAYANNKCLCG 306

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  255 bits (655), Expect = 6e-78
 Identities = 92/354 (25%), Positives = 141/354 (39%), Gaps = 64/354 (18%)

Query: 267 SIPKSILGLKSLVS----FDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTG--KIPSSL 320
            I K +    +L S     D  +    G + +   Q   +  L L   N      IPSSL
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 321 ASMPKLQVLQLWS-NQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLIL 379
           A++P L  L +   N   G IP  + K   L  + ++   ++G IP+ L    +L  L  
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 380 FSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQ 439
             N+L G +P S+S+                                             
Sbjct: 133 SYNALSGTLPPSISSL-------------------------------------------- 148

Query: 440 KWEMTSLQMLNLAGNNFSGKLPDSFG--SDQLENLDLSENRFSGTIPRSFGRLSELMQLK 497
                +L  +   GN  SG +PDS+G  S    ++ +S NR +G IP +F  L+ L  + 
Sbjct: 149 ----PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203

Query: 498 ISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQ 557
           +SRN L GD      S K    + L+ N L+  +   +     L  LDL  N++ G +PQ
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQ 262

Query: 558 TLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGND-LCGGDSTSGLPPC 610
            L ++  L  +N+S N+  G +P  G     + +A A N  LCG      LP C
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS----PLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  104 bits (261), Expect = 2e-24
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 64  NAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFT 123
             ++LS   + G  S       + + I+L+ N L+ ++       S +L  L+L NN   
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIY 257

Query: 124 GPVP--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLS 175
           G +P  +  L  L  L++S N L G+IP+  G+     V     N  +   PL 
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP 310

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  298 bits (766), Expect = 3e-90
 Identities = 110/501 (21%), Positives = 189/501 (37%), Gaps = 18/501 (3%)

Query: 68  LSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTG--P 125
           L+   I      +      ++++ L++N L   +     S   +L+ L       +    
Sbjct: 64  LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDF 122

Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIF 185
           +P+ +   LE L L +N +S     +      LKVLD   N +       +S++      
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 186 TLASNQL-IGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIG--DLTSLNHLDLVYNNLTG 242
           +L  N   I  I          + +  G       I K +    + SL        +   
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 243 QIPPSFGNLS--NLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQ 300
             P  F  L   ++  + L ++        +      L   DL+  +LS E+P  ++ L 
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS 301

Query: 301 NLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSN-LGKQNNLTVIDLSTNF 359
            L+ L L +N F      S ++ P L  L +  N    E+ +  L    NL  +DLS + 
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 360 LT--GKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELS-SEF 416
           +         L +   L  L L  N        +   C  L  + L   RL  + + S F
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 417 TRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS----DQLENL 472
             L L+  L++S + L     +    + +LQ LNL GN+F         S     +LE L
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481

Query: 473 DLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIP 532
            LS    S     +F  L  +  + +S N+L     E LS  K +  L+L++N +S  +P
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILP 540

Query: 533 ASLSEMPVLGQLDLSENQLSG 553
           + L  +     ++L +N L  
Sbjct: 541 SLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  295 bits (758), Expect = 5e-89
 Identities = 111/543 (20%), Positives = 201/543 (37%), Gaps = 23/543 (4%)

Query: 56  SCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFL 115
            C               ++ +I  ++      E +  S N L   I +  FS   +L FL
Sbjct: 7   KCIEKEVNKTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLP-TIQNTTFSRLINLTFL 62

Query: 116 NLSNNNFTGPVP--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIP 173
           +L+             S  RL+ L L+ N L       +     LK L      +     
Sbjct: 63  DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122

Query: 174 LSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNH- 232
           + + N  +L+   L SN +      +      LK +    N +     +++  L    + 
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 233 -LDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI--LGLKSLVSFDLSDNYLS 289
            L+L  N++ G I P   + +  + L     +    I K +    ++SL      D    
Sbjct: 183 SLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

Query: 290 GEIPEEVIQLQ--NLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQ 347
              P     L   ++E ++L  + F     ++      LQ L L +   S E+PS L   
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL 300

Query: 348 NNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKI-PNSLSTCKSLRRVRLQNN 406
           + L  + LS N        +  +  SL  L +  N+   ++    L   ++LR + L ++
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 407 RL--SGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSF 464
            +  S   + +   L  +  L++S N+      E   E   L++L+LA      K   S 
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 465 --GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKL---FGDIPEELSSCKKLVS 519
                 L+ L+LS +    +  + F  L  L  L +  N            L +  +L  
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 520 LDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSL 579
           L LS   LS     + + + ++  +DLS N+L+    + L  +  +  +N++ NH    L
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIIL 539

Query: 580 PST 582
           PS 
Sbjct: 540 PSL 542

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  257 bits (658), Expect = 6e-75
 Identities = 101/500 (20%), Positives = 180/500 (36%), Gaps = 22/500 (4%)

Query: 68  LSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTG--P 125
                IS      + +   +ES+ L SN +S  I       +  L+ L+  NN       
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSK 170

Query: 126 VPIGSLSRLEI--LDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISN--ITS 181
             + SL +     L+L+ N ++G I       +  + L+ GG   +  I   + N  I S
Sbjct: 171 EDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

Query: 182 LQIFTLASNQLIGSIPREIGQLR--NLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNN 239
           L + T          P     L   +++ I L  +             + L  LDL   +
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289

Query: 240 LTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQ- 298
           L+ ++P     LS L+ L L  NK       S     SL    +  N    E+    ++ 
Sbjct: 290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348

Query: 299 LQNLEILHLFSNNFT--GKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLS 356
           L+NL  L L  ++          L ++  LQ L L  N+          +   L ++DL+
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 357 TNFLTGKIPET-LCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSG---EL 412
              L  K  ++   +   L  L L  + L+           +L+ + LQ N       + 
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK 468

Query: 413 SSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENL 472
           ++    L  +  L +S  DLS         +  +  ++L+ N  +    ++    +   L
Sbjct: 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL 528

Query: 473 DLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIP 532
           +L+ N  S  +P     LS+   + + +N L        S+   L     +  +L     
Sbjct: 529 NLASNHISIILPSLLPILSQQRTINLRQNPLDCTC----SNIYFLEWYKENMQKLEDTED 584

Query: 533 ASLSEMPVLGQLDLSENQLS 552
                 P+L  + LS+  LS
Sbjct: 585 TLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  151 bits (383), Expect = 3e-38
 Identities = 52/246 (21%), Positives = 98/246 (39%), Gaps = 9/246 (3%)

Query: 53  NGISCQNSTHVNAIELSAKNISGKISSSIF-HLPHVESINLSSNQLSG-EIPSDIFSSSN 110
             IS  N   +  + +       ++ +    +L ++  ++LS + +   +  +    + +
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

Query: 111 SLRFLNLSNNNFTG--PVPIGSLSRLEILDLSNNMLSGKIPEEI-GSFSGLKVLDLGGNV 167
            L+ LNLS N              +LE+LDL+   L  K  +    +   LKVL+L  ++
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

Query: 168 LVGEIPLSISNITSLQIFTLASNQLIGSIPREIG---QLRNLKWIYLGYNNLSGEIPKEI 224
           L          + +LQ   L  N       ++      L  L+ + L + +LS       
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496

Query: 225 GDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLS 284
             L  +NH+DL +N LT     +  +L  + YL L  N ++  +P  +  L    + +L 
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555

Query: 285 DNYLSG 290
            N L  
Sbjct: 556 QNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  110 bits (276), Expect = 5e-25
 Identities = 37/204 (18%), Positives = 64/204 (31%), Gaps = 6/204 (2%)

Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQ 447
           IP +L    S   +    N L    ++ F+RL  + FLD++   +     +       L 
Sbjct: 27  IPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84

Query: 448 MLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGD 506
            L L  N        +      L++L   +   S            L  L +  N +   
Sbjct: 85  TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

Query: 507 IPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQ--LDLSENQLSGKIPQTLGRVAS 564
              +    +KL  LD  NN +       +S +       L+L+ N ++G I       A 
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAV 203

Query: 565 LVQVNISHNHFHGSLPSTGAFLAI 588
              +N         +        I
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTI 227

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  280 bits (719), Expect = 2e-83
 Identities = 108/538 (20%), Positives = 187/538 (34%), Gaps = 31/538 (5%)

Query: 60  STHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSN 119
            +    I+LS   +    S S  +   ++ ++LS  ++   I    +   + L  L L+ 
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTG 89

Query: 120 NNFTGPVP--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVG-EIPLSI 176
           N      P     L+ LE L      L+      IG    LK L++  N +   ++P   
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 177 SNITSLQIFTLASNQLIGSIPREIGQLRNLKW----IYLGYNNLSGEIPKEIGDLTSLNH 232
           SN+T+L    L+ N +      ++  LR        + +  N +   I  +      L+ 
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHE 208

Query: 233 LDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSIL------GLKSLV--SFDL 283
           L L  N  +  I      NL+ L    L   +        I       GL  +    F L
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 284 SDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSN 343
           +      +   +   L N+  + L   +        +    K Q L +   Q       +
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLD 326

Query: 344 LGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLS--TCKSLRRV 401
           L     L  + L+ N  +  I        SL  L L  N+L      S S     SLR +
Sbjct: 327 L---PFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 402 RLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWE-MTSLQMLNLAGNNFSGKL 460
            L  N     +S+ F  L  +  LD   + L        +  +  L  L+++  N     
Sbjct: 382 DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440

Query: 461 PDSF-GSDQLENLDLSENRFSGTIPRS-FGRLSELMQLKISRNKLFGDIPEELSSCKKLV 518
              F G   L  L ++ N F      + F   + L  L +S+ +L         +  +L 
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500

Query: 519 SLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFH 576
            L++S+N L     +  +++  L  LD S N++            SL   N+++N   
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  278 bits (713), Expect = 1e-82
 Identities = 116/528 (21%), Positives = 198/528 (37%), Gaps = 33/528 (6%)

Query: 75  GKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--IGSLS 132
           G ++  I  +P++ +      +LS ++P DI SS    + ++LS N           + S
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPSS---TKNIDLSFNPLKILKSYSFSNFS 56

Query: 133 RLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQL 192
            L+ LDLS   +     +       L  L L GN +    P S S +TSL+       +L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 193 IGSIPREIGQLRNLKWIYLGYNNLSG-EIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNL 251
                  IGQL  LK + + +N +   ++P    +LT+L H+DL YN +          L
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 252 SNLR----YLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILH 306
                    L +  N +   I         L    L  N+ S  I +  +Q L  L +  
Sbjct: 177 RENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 307 LFSNNFTGKI------PSSLASMPKLQV--LQLWSNQFSGEIPSNLGKQNNLTVIDLSTN 358
           L    F  +       PS +  +  + +   +L       +         N++ + L+  
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 359 FLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTR 418
            +     E +        L +    L+      L     L+ + L  N+ S  +S +   
Sbjct: 296 SIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLP---FLKSLTLTMNKGS--ISFKKVA 348

Query: 419 LPLVYFLDISGNDLSGRIGE--QKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSE 476
           LP + +LD+S N LS             SL+ L+L+ N       +  G ++L++LD   
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408

Query: 477 NRFSGTIPRS-FGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPAS- 534
           +        S F  L +L+ L IS      D          L +L ++ N    +  ++ 
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 535 LSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST 582
            +    L  LDLS+ QL          +  L  +N+SHN+      S 
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  215 bits (549), Expect = 6e-60
 Identities = 84/413 (20%), Positives = 145/413 (35%), Gaps = 27/413 (6%)

Query: 189 SNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSF 248
            +Q +  +P +I    + K I L +N L         + + L  LDL    +      ++
Sbjct: 19  MDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW 76

Query: 249 GNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLF 308
             L +L  L L  N +    P S  GL SL +    +  L+      + QL  L+ L++ 
Sbjct: 77  HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136

Query: 309 SNNFTG-KIPSSLASMPKLQVLQLWSNQFSGEIPSNL----GKQNNLTVIDLSTNFLTGK 363
            N     K+P+  +++  L  + L  N       ++L            +D+S N +   
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-F 195

Query: 364 IPETLCDSGSLFKLILFSNSLEGKIP-NSLSTCKSLRRVRLQNNRLSGELSSE------F 416
           I +       L +L L  N     I    L     L   RL       E + E       
Sbjct: 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255

Query: 417 TRLPLVYF--LDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDL 474
             L  V      ++  +       +   + ++  ++LAG +    L D     + ++L +
Sbjct: 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSI 314

Query: 475 SENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPAS 534
              +           L  L  L ++ NK    I  +  +   L  LDLS N LS     S
Sbjct: 315 IRCQLKQF---PTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 535 LSEM--PVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAF 585
            S++    L  LDLS N     +      +  L  ++  H+     +    AF
Sbjct: 370 YSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLK-RVTEFSAF 420

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  183 bits (467), Expect = 4e-49
 Identities = 73/400 (18%), Positives = 139/400 (34%), Gaps = 33/400 (8%)

Query: 194 GSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSN 253
           GS+   I  + N+         LS ++P +I   +S  ++DL +N L      SF N S 
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 254 LRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFT 313
           L++L L + ++     K+  GL  L +  L+ N +    P     L +LE L        
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 314 GKIPSSLASMPKLQVLQLWSNQFSG-EIPSNLGKQNNLTVIDLSTNFLTGKIPETLCD-- 370
                 +  +  L+ L +  N     ++P+      NL  +DLS N++       L    
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 371 --SGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSE-FTRLPLVYFLDI 427
                   L +  N ++  I +       L  + L+ N  S  +       L  ++   +
Sbjct: 178 ENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 428 SGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSF 487
              +             +L++           + +      ++   L+           F
Sbjct: 237 ILGEFKD--------ERNLEIFEP-------SIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281

Query: 488 GRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLS 547
             L+ +  + ++   +     E++    K  SL +   QL       L     L  L L+
Sbjct: 282 HCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPF---LKSLTLT 336

Query: 548 ENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLA 587
            N+ S  I      + SL  +++S N    S   + + L 
Sbjct: 337 MNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 1e-09
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 58  QNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNL 117
            N+T++  ++LS   +          L  ++ +N+S N L   + S  ++   SL  L+ 
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDC 528

Query: 118 SNNNFTGPVP--IGSLSRLEILDLSNNMLS 145
           S N               L   +L+NN ++
Sbjct: 529 SFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  239 bits (612), Expect = 7e-69
 Identities = 121/561 (21%), Positives = 197/561 (35%), Gaps = 54/561 (9%)

Query: 89  SINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTG--PVPIGSLSRLEILDLSNNMLSG 146
           +          +IP ++  S    + L+LS N           S   L++LDLS   +  
Sbjct: 11  TYQCMELNFY-KIPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 147 KIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNL 206
                  S S L  L L GN +      + S ++SLQ        L       IG L+ L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 207 KWIYLGYNNL-SGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLF----LYQ 261
           K + + +N + S ++P+   +LT+L HLDL  N +          L  +  L     L  
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 262 NKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLF------SNNFTG 314
           N +   I         L    L +N+ S  + +  IQ L  LE+  L         N   
Sbjct: 187 NPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 315 KIPSSLASMPKLQVLQLWSNQ---FSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDS 371
              S+L  +  L + +        +  +I        N++   L +  +  ++ +   + 
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF 304

Query: 372 G--------------------SLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLS-- 409
           G                    SL +L   SN        S     SL  + L  N LS  
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFK 362

Query: 410 GELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSF--GSD 467
           G  S        + +LD+S N +   +      +  L+ L+   +N       S      
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 468 QLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEE-LSSCKKLVSLDLSNNQ 526
            L  LD+S           F  LS L  LK++ N    +   +  +  + L  LDLS  Q
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 527 LSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAF- 585
           L    P + + +  L  L+++ NQL         R+ SL ++ +  N +  S P      
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 541

Query: 586 --LAINATAVAGNDLCGGDST 604
             L  N+    G+  C G   
Sbjct: 542 RWLNKNSQKEQGSAKCSGSGK 562

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  196 bits (499), Expect = 1e-53
 Identities = 88/459 (19%), Positives = 156/459 (33%), Gaps = 41/459 (8%)

Query: 159 KVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSG 218
                       +IP ++    S +   L+ N L             L+ + L    +  
Sbjct: 10  ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 219 EIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSL 278
                   L+ L+ L L  N +      +F  LS+L+ L   +  L       I  LK+L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 279 VSFDLSDNYL-SGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQV----LQLWS 333
              +++ N + S ++PE    L NLE L L SN       + L  + ++ +    L L  
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 334 NQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCD---SGSLFKLILFSNSLEGKI-P 389
           N  +  I     K+  L  + L  NF +  + +T         + +L+L     EG +  
Sbjct: 187 NPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 390 NSLSTCKSLRRVRLQNNRLSG------ELSSEFTRLPLVYFLDISGNDLSG-RIGEQKWE 442
              S  + L  + ++  RL+       ++   F  L  V    +    +   +     + 
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305

Query: 443 MTSLQMLNLAGNNFS-----------------GKLPDSFGSDQLENLDLSENR--FSGTI 483
              L+++N     F                  G          LE LDLS N   F G  
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 484 PRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPAS-LSEMPVLG 542
            +S    + L  L +S N +   +       ++L  LD  ++ L      S    +  L 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 543 QLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPS 581
            LD+S              ++SL  + ++ N F  +   
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  125 bits (316), Expect = 4e-30
 Identities = 49/212 (23%), Positives = 85/212 (40%), Gaps = 14/212 (6%)

Query: 83  HLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFT----GPVPIGSLSRLEILD 138
            L  ++ +  +SN+              SL FL+LS N  +            + L+ LD
Sbjct: 323 KLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 139 LSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSI-SNITSLQIFTLASNQLIGSIP 197
           LS N +   +         L+ LD   + L      S+  ++ +L    ++      +  
Sbjct: 380 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 198 REIGQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLTGQIPPS-FGNLSNLR 255
                L +L+ + +  N+       +I  +L +L  LDL    L  Q+ P+ F +LS+L+
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQ 497

Query: 256 YLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDN 286
            L +  N+L  S+P  I   L SL    L  N
Sbjct: 498 VLNMASNQLK-SVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  125 bits (315), Expect = 5e-30
 Identities = 57/275 (20%), Positives = 103/275 (37%), Gaps = 9/275 (3%)

Query: 1   MANNSILFMFLFLSFCTCHGAELELLLSFKSTVNDPYNFLSNWDS-SVTFCKWNGISCQN 59
           +A        +   F          L+S        +++   W    +  CK+       
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 323

Query: 60  STHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSG-EIPSDIFSSSNSLRFLNLS 118
              +  +  ++       S     LP +E ++LS N LS     S     + SL++L+LS
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 119 NNNFTG-PVPIGSLSRLEILDLSNNMLSGKIPEEI-GSFSGLKVLDLGGNVLVGEIPLSI 176
            N           L +LE LD  ++ L       +  S   L  LD+             
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 177 SNITSLQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLD 234
           + ++SL++  +A N    +   +I  +LRNL ++ L    L  ++       L+SL  L+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLN 500

Query: 235 LVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIP 269
           +  N L       F  L++L+ ++L+ N    S P
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  232 bits (594), Expect = 2e-67
 Identities = 108/481 (22%), Positives = 177/481 (36%), Gaps = 34/481 (7%)

Query: 79  SSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILD 138
            +   L       L    ++  +     +  + +  L            +  L+ L  ++
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQIN 74

Query: 139 LSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPR 198
            SNN L+   P  + + + L  + +  N +    PL  +N+T+L   TL +NQ+    P 
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITDIDP- 129

Query: 199 EIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLF 258
            +  L NL  + L  N +S      +  LTSL  L    N +T   P    NL+ L  L 
Sbjct: 130 -LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLD 183

Query: 259 LYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPS 318
           +  NK++      +  L +L S   ++N +S   P     L NL+ L L  N        
Sbjct: 184 ISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IG 237

Query: 319 SLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLI 378
           +LAS+  L  L L +NQ S   P  L     LT + L  N ++   P  L    +L  L 
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293

Query: 379 LFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGE 438
           L  N LE   P  +S  K+L  + L  N +S    S  + L  +  L    N +S     
Sbjct: 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSDVSSL 349

Query: 439 QKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKI 498
               +T++  L+   N  S  L       ++  L L++  ++         +S    +K 
Sbjct: 350 AN--LTNINWLSAGHNQISD-LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN 406

Query: 499 SRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQT 558
               L    P  +S        D++ N  S               +       SG + Q 
Sbjct: 407 VTGALI--APATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVTQP 463

Query: 559 L 559
           L
Sbjct: 464 L 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  232 bits (593), Expect = 3e-67
 Identities = 105/481 (21%), Positives = 185/481 (38%), Gaps = 37/481 (7%)

Query: 103 SDIFSSSN--SLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKV 160
           + IF+ +         L   N T  V    L ++  L      +     + +   + L  
Sbjct: 15  NQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQ 72

Query: 161 LDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEI 220
           ++   N L    PL   N+T L    + +NQ+    P  +  L NL  + L  N ++   
Sbjct: 73  INFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128

Query: 221 PKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVS 280
           P  + +LT+LN L+L  N ++     +   L++L+ L    N++T   P  +  L +L  
Sbjct: 129 P--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLER 181

Query: 281 FDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEI 340
            D+S N +S      + +L NLE L   +N  +   P  L  +  L  L L  NQ     
Sbjct: 182 LDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-- 235

Query: 341 PSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRR 400
              L    NLT +DL+ N ++   P  L     L +L L +N +    P  L+   +L  
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 291

Query: 401 VRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKL 460
           + L  N+L     S  + L  + +L +  N++S         +T LQ L    N  S   
Sbjct: 292 LELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSS--LTKLQRLFFYNNKVSD-- 345

Query: 461 PDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVS 519
             S  +   +  L    N+ S   P     L+ + QL ++            ++     +
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNT 403

Query: 520 LDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSL 579
           +      L    PA++S+     + D++ N  S    +     +  V +      F G++
Sbjct: 404 VKNVTGALI--APATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTV 460

Query: 580 P 580
            
Sbjct: 461 T 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  115 bits (289), Expect = 5e-27
 Identities = 54/260 (20%), Positives = 93/260 (35%), Gaps = 38/260 (14%)

Query: 61  THVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNN 120
           T++  ++L+   IS    + +  L  +  + L +NQ+S   P    +   +L  L L+ N
Sbjct: 243 TNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP---LAGLTALTNLELNEN 297

Query: 121 NFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNIT 180
                 PI +L  L  L L  N +S   P                          +S++T
Sbjct: 298 QLEDISPISNLKNLTYLTLYFNNISDISP--------------------------VSSLT 331

Query: 181 SLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNL 240
            LQ     +N++  S    +  L N+ W+  G+N +S   P  + +LT +  L L     
Sbjct: 332 KLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387

Query: 241 TGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQ 300
           T        N+S    +      L    P +I    S    D++ N  S    E      
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS-YTNEVSYTFS 444

Query: 301 NLEILHLFSNNFTGKIPSSL 320
               +   +  F+G +   L
Sbjct: 445 QPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.0 bits (185), Expect = 4e-14
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 8/163 (4%)

Query: 59  NSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLS 118
           N  ++  + L   NIS    S +  L  ++ +   +N++S  + S   ++  ++ +L+  
Sbjct: 307 NLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD-VSS--LANLTNINWLSAG 361

Query: 119 NNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISN 178
           +N  +   P+ +L+R+  L L++   +        + S    +      L+   P +IS+
Sbjct: 362 HNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISD 419

Query: 179 ITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIP 221
             S     +  N L                I  G    SG + 
Sbjct: 420 GGSYTEPDITWN-LPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  211 bits (538), Expect = 1e-59
 Identities = 75/499 (15%), Positives = 166/499 (33%), Gaps = 24/499 (4%)

Query: 77  ISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTG--PVPIGSLSRL 134
           I     +    +   ++ + L  +  + +  S+ +++ L+LS N  +      +   ++L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 135 EILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIG 194
           E+L+LS+N+L      ++ S S L+ LDL  N +       +    S++    A+N  I 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN-IS 112

Query: 195 SIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG-QIPPSFGNLSN 253
            +       +  K IYL  N ++     + G  + + +LDL  N +          +   
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 254 LRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFT 313
           L +L L  N +   +   ++    L + DLS N L+  +  E      +  + L +N   
Sbjct: 171 LEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 314 GKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGS 373
             I  +L     L+   L  N F      +     N  V  ++   +     +   +   
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 374 LFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSG----ELSSEFTRLPLVYFLDISG 429
                  +   E           +L+R         G     L  E         +D   
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 430 NDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGR 489
                 I +      +   L         ++ +   +    +  L +      +  +   
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

Query: 490 LSELMQLKISRNKL-FGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSE 548
            S L  L+    +     + ++      +   D+  ++ +     +     + G+ DL+ 
Sbjct: 406 QSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465

Query: 549 NQLSGKIPQTLGRVASLVQ 567
              +  + + + R  +L  
Sbjct: 466 ASANATLQELVVREQNLAS 484

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  195 bits (498), Expect = 3e-54
 Identities = 70/453 (15%), Positives = 144/453 (31%), Gaps = 21/453 (4%)

Query: 128 IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL 187
             + +R +I  ++++ L   +     S   +K LDL GN L       ++  T L++  L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 188 ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS 247
           +SN L      ++  L  L+ + L  N +      E+    S+  L    NN++ ++  S
Sbjct: 66  SSNVL--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCS 117

Query: 248 FGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSG-EIPEEVIQLQNLEILH 306
                  + ++L  NK+T            +   DL  N +      E       LE L+
Sbjct: 118 --RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 307 LFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPE 366
           L  N     +        KL+ L L SN+ +  +         +T I L  N L   I +
Sbjct: 176 LQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 367 TLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLD 426
            L  S +L    L  N           + K+ R   +    +            +     
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFS-KNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 427 ISGNDLSG-----RIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSG 481
                               +     +L+  G+       +     +   +D  + ++  
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 482 TIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVL 541
            I +   R    + L+  +  L   +     +  +L               A+  + P+ 
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQ 410

Query: 542 GQLDLSENQLSGKIPQTLGRVASLVQVNISHNH 574
               + +      + Q   +  ++   ++  + 
Sbjct: 411 LLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  131 bits (332), Expect = 2e-32
 Identities = 54/287 (18%), Positives = 100/287 (34%), Gaps = 40/287 (13%)

Query: 292 IPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLT 351
           I E        +I  +  ++    + S   S   ++ L L  N  S    ++L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 352 VIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGE 411
           +++LS+N L       L    +L  L L +N ++      L    S+  +   NN +   
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI--- 111

Query: 412 LSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS-DQLE 470
                +R+                           + + LA N  +       G   +++
Sbjct: 112 -----SRVSCSRG-------------------QGKKNIYLANNKITMLRDLDEGCRSRVQ 147

Query: 471 NLDLSENRFSG-TIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSG 529
            LDL  N                L  L +  N ++ D+  ++    KL +LDLS+N+L+ 
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA- 204

Query: 530 HIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFH 576
            +         +  + L  N+L   I + L    +L   ++  N FH
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 9e-07
 Identities = 15/71 (21%), Positives = 28/71 (39%)

Query: 507 IPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLV 566
           I E   +  +     ++++ L   + +       + +LDLS N LS      L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 567 QVNISHNHFHG 577
            +N+S N  + 
Sbjct: 62  LLNLSSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 22/198 (11%), Positives = 55/198 (27%), Gaps = 13/198 (6%)

Query: 54  GISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDI---FSSSN 110
           G + +  T        A       +     L  ++    +     G     +     +  
Sbjct: 277 GQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQA 336

Query: 111 SLRFLNLSNNNFTGPVPIGS---LSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNV 167
             R ++     +   V             L+     L  ++     + + L         
Sbjct: 337 RQREIDALKEQYRT-VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

Query: 168 LVGEIPLSISNITSLQIFTLASNQL-IGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGD 226
            + E+  +    + LQ+      +     + ++  Q   ++   +  +  + ++ +E   
Sbjct: 396 QI-ELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET-QLAEENAR 453

Query: 227 LTSLN---HLDLVYNNLT 241
           L  LN    L L   N T
Sbjct: 454 LKKLNGEADLALASANAT 471

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  209 bits (535), Expect = 2e-59
 Identities = 97/505 (19%), Positives = 164/505 (32%), Gaps = 86/505 (17%)

Query: 102 PSDIFSSSNSLRFLNLSNNNFTG-PVPIGSLSRLEILDLSNNMLSGKIPEEIGS------ 154
           P ++  S+  L+     ++N T  PV   ++        + +      P   G       
Sbjct: 5   PRNV--SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 155 -------FSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLK 207
                        L+L    L   +P    ++ SL     + N L   +P     L++L 
Sbjct: 63  SRLRDCLDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLL 117

Query: 208 WIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGS 267
                   LS   P        L +L +  N L     P   N S L+ + +  N L   
Sbjct: 118 VDNNNLKALSDLPP-------LLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLK-K 167

Query: 268 IPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQ 327
           +P     L+ +      +N L  E+P E+  L  L  ++  +N+   K+P    S   L+
Sbjct: 168 LPDLPPSLEFI---AAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLS---LE 218

Query: 328 VLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGK 387
            +   +N         L     LT I    N L   +P+      SL  L +  N L   
Sbjct: 219 SIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLP---PSLEALNVRDNYLT-D 271

Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQ 447
           +P    +   L       + LS    +       +Y+L+ S N++            SL+
Sbjct: 272 LPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEIRSLCD----LPPSLE 320

Query: 448 MLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDI 507
            LN++ N    +LP       LE L  S N  +  +P     L +   L +  N L  + 
Sbjct: 321 ELNVSNNKLI-ELPALPPR--LERLIASFNHLA-EVPELPQNLKQ---LHVEYNPL-REF 372

Query: 508 PEELSS----------------CKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQL 551
           P+   S                 + L  L +  N L    P        +  L ++  ++
Sbjct: 373 PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPES---VEDLRMNSERV 428

Query: 552 SGKIPQTLGRVASLVQVNISHNHFH 576
                        L      H+H H
Sbjct: 429 VDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  205 bits (525), Expect = 4e-58
 Identities = 94/489 (19%), Positives = 174/489 (35%), Gaps = 72/489 (14%)

Query: 76  KISSSIFHLPHVESINLSSNQLSGEIPSDIFS------------SSNSLRFLNLSNNNFT 123
           ++     ++        + ++     P                        L L+N   +
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 124 GPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQ 183
             +P      LE L  S N L+ ++PE   S   L V +     L             L+
Sbjct: 85  -SLP-ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL-------SDLPPLLE 134

Query: 184 IFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQ 243
              +++NQL   +P E+     LK I +  N+L  ++P     L     +    N L   
Sbjct: 135 YLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLE---FIAAGNNQLE-- 186

Query: 244 IPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLE 303
             P   NL  L  ++   N L   +P   L L+S+      +N L      E+  L  L 
Sbjct: 187 ELPELQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILE--ELPELQNLPFLT 240

Query: 304 ILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGK 363
            ++  +N     +P      P L+ L +  N  + ++P       +LT +D+S N  +  
Sbjct: 241 TIYADNNLLK-TLPDLP---PSLEALNVRDNYLT-DLPELPQ---SLTFLDVSENIFS-G 291

Query: 364 IPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVY 423
           + E      +L+ L   SN +   + +      SL  + + NN+L  EL +   RL    
Sbjct: 292 LSELP---PNLYYLNASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPALPPRL---E 340

Query: 424 FLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTI 483
            L  S N L+  + E      +L+ L++  N    + PD      +E+L ++ +     +
Sbjct: 341 RLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPDIPE--SVEDLRMNSH--LAEV 391

Query: 484 PRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQ 543
           P     L +L    +  N L  + P+   S   +  L +++ ++      +      L  
Sbjct: 392 PELPQNLKQL---HVETNPL-REFPDIPES---VEDLRMNSERVVDPYEFAHETTDKLED 444

Query: 544 LDLSENQLS 552
                +   
Sbjct: 445 DVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  190 bits (486), Expect = 7e-53
 Identities = 99/435 (22%), Positives = 158/435 (36%), Gaps = 64/435 (14%)

Query: 148 IPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLR--- 204
           I     S + L+      + L  E+P+   N+ S   +  A ++   + P   G+ R   
Sbjct: 3   INPRNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 205 ----------NLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNL 254
                         + L    LS  +P+    L     L    N+LT ++P    +L +L
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSL 116

Query: 255 RYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTG 314
                    L+   P        L    +S+N L  ++P E+     L+I+ + +N+   
Sbjct: 117 LVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK- 166

Query: 315 KIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSL 374
           K+P      P L+ +   +NQ   E+P  L     LT I    N L  K+P+      SL
Sbjct: 167 KLPDLP---PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLP---LSL 217

Query: 375 FKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSG 434
             ++  +N LE      L     L  +   NN L   L      L  +   D    DL  
Sbjct: 218 ESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPE 274

Query: 435 RIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELM 494
                     SL  L+++ N FS  L +   +  L  L+ S N    ++      L E  
Sbjct: 275 LPQ-------SLTFLDVSENIFS-GLSELPPN--LYYLNASSNEIR-SLCDLPPSLEE-- 321

Query: 495 QLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGK 554
            L +S NKL  ++P       +L  L  S N L+  +P        L QL +  N L  +
Sbjct: 322 -LNVSNNKL-IELPALPP---RLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-E 371

Query: 555 IPQTLGRVASLVQVN 569
            P     V  L   +
Sbjct: 372 FPDIPESVEDLRMNS 386

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  180 bits (459), Expect = 2e-49
 Identities = 86/436 (19%), Positives = 156/436 (35%), Gaps = 81/436 (18%)

Query: 68  LSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP 127
            S  +++ ++      L  +   N +   LS   P         L +L +SNN       
Sbjct: 98  ASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLEKLPE 148

Query: 128 IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL 187
           + + S L+I+D+ NN L  K+P+   S   L+ +  G N            +  L     
Sbjct: 149 LQNSSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNN-----------QLEELP---- 189

Query: 188 ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS 247
                      E+  L  L  IY   N+L  ++P       SL  +    N L     P 
Sbjct: 190 -----------ELQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNILE--ELPE 232

Query: 248 FGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHL 307
             NL  L  ++   N L  ++P     L++L   ++ DNYL+ ++PE    L  L++   
Sbjct: 233 LQNLPFLTTIYADNNLLK-TLPDLPPSLEAL---NVRDNYLT-DLPELPQSLTFLDVSEN 287

Query: 308 FSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPET 367
             +  +   P+       L  L   SN+    +        +L  +++S N L  ++P  
Sbjct: 288 IFSGLSELPPN-------LYYLNASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPAL 335

Query: 368 LCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDI 427
                 L +LI   N L  ++P      K L    ++ N L  E       +  +     
Sbjct: 336 P---PRLERLIASFNHLA-EVPELPQNLKQL---HVEYNPLR-EFPDIPESVEDLR---- 383

Query: 428 SGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSF 487
               ++  + E      +L+ L++  N    + PD   S  +E+L ++  R       + 
Sbjct: 384 ----MNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPES--VEDLRMNSERVVDPYEFAH 436

Query: 488 GRLSELMQLKISRNKL 503
               +L       +  
Sbjct: 437 ETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  179 bits (455), Expect = 1e-48
 Identities = 92/416 (22%), Positives = 156/416 (37%), Gaps = 74/416 (17%)

Query: 196 IPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLS--- 252
           I         L+      +NL+ E+P E  ++ S       ++      PP  G      
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 253 ----------NLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNL 302
                         L L    L+ S+P+    L+SL     S N L+ E+PE    L++L
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSL 116

Query: 303 EILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTG 362
            + +      +   P        L+ L + +NQ   ++P  L   + L +ID+  N L  
Sbjct: 117 LVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK- 166

Query: 363 KIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLV 422
           K+P+      SL  +   +N LE ++P  L     L  +   NN L  +L      L   
Sbjct: 167 KLPDLP---PSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLSL--- 217

Query: 423 YFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGT 482
             +    N L   + E +  +  L  +    N     LPD   S  LE L++ +N  +  
Sbjct: 218 ESIVAGNNILE-ELPELQ-NLPFLTTIYADNNLLK-TLPDLPPS--LEALNVRDNYLT-D 271

Query: 483 IPRSFGRLSELM-----------------QLKISRNKLFGDIPEELSSCKKLVSLDLSNN 525
           +P     L+ L                   L  S N++   + +   S   L  L++SNN
Sbjct: 272 LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI-RSLCDLPPS---LEELNVSNN 327

Query: 526 QLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPS 581
           +L   +PA       L +L  S N L+ ++P+      +L Q+++ +N      P 
Sbjct: 328 KLI-ELPALPPR---LERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPD 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  216 bits (553), Expect = 4e-59
 Identities = 130/576 (22%), Positives = 209/576 (36%), Gaps = 59/576 (10%)

Query: 42  NWDSSVTFCKWNGISC--QNSTHVNAIELSAKNISGKISSSIF-HLPHVESINLSSNQLS 98
           ++D  + F ++  ++   Q       + LS   I   +++S F  L  ++ + L S    
Sbjct: 3   SFDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTP 61

Query: 99  GEIPSDIFSSSNSLRFLNLSNNNFTGPVPIG---SLSRLEILDLSNNMLSGKI--PEEIG 153
             I  + F +  +LR L+L ++     +       L  L  L L    LS  +       
Sbjct: 62  LTIDKEAFRNLPNLRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 154 SFSGLKVLDLGGNVLVG-EIPLSISNITSLQIFTLASNQLIGSIPREI---GQLRNLKWI 209
           +   L  LDL  N +    +  S   + SL+    +SNQ I  +        Q + L + 
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFF 179

Query: 210 YLGYNNLSGEIPKEIGDL------TSLNHLDLVYNNLTGQIPPSFGN------------L 251
            L  N+L   +  + G          L  LD+  N  T  I  +F N             
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239

Query: 252 SNLRYLFLYQNKLTGSIPKSILGLK--SLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLF 308
            ++       + +      +  GL   S+   DLS  ++   +   V + L++L++L+L 
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLA 298

Query: 309 SNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETL 368
            N        +   +  LQVL L  N       SN      +  IDL  N +     +T 
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358

Query: 369 CDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDIS 428
                L  L L  N+L      ++    S+  + L  N+L        T       + +S
Sbjct: 359 KFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINLTAN----LIHLS 409

Query: 429 GNDLSG-RIGEQKWEMTSLQMLNLAGNNFSGKLPDSF--GSDQLENLDLSENRFSGTI-- 483
            N L    I      +  LQ+L L  N FS    D     +  LE L L EN        
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469

Query: 484 ---PRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPV 540
                 F  LS L  L ++ N L    P   S    L  L L++N+L+  +  +      
Sbjct: 470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDL-PAN 527

Query: 541 LGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFH 576
           L  LD+S NQL    P       SL  ++I+HN F 
Sbjct: 528 LEILDISRNQLLAPNPDVF---VSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  168 bits (428), Expect = 3e-43
 Identities = 102/517 (19%), Positives = 182/517 (35%), Gaps = 65/517 (12%)

Query: 56  SCQNSTHVNAIELSAKNISGKISSSIF-HLPHVESINLSSNQLSGEIPSDIFSS--SNSL 112
             +N   +  ++LS   I        F  L  ++SI+ SSNQ+   +           +L
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTL 176

Query: 113 RFLNLSNNNFTGPVPIGSLS--------RLEILDLSNNMLSGKIPEE-IGSFSGLKVLDL 163
            F +L+ N+    V +             LEILD+S N  +  I      + S  +   L
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236

Query: 164 GGNVLVGEIPLSISNIT-------------SLQIFTLASNQLIGSIPREIGQLRNLKWIY 210
                +        NI              S++   L+   +     R    L++LK + 
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296

Query: 211 LGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPK 270
           L YN ++    +    L +L  L+L YN L      +F  L  + Y+ L +N +     +
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356

Query: 271 SILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQ 330
           +   L+ L + DL DN L+      +  + ++  + L  N        +L       ++ 
Sbjct: 357 TFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLT----ANLIH 407

Query: 331 LWSNQFSG-EIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDS-GSLFKLILFSNSLEGKI 388
           L  N+    +I   L +  +L ++ L+ N  +    +       SL +L L  N L+   
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467

Query: 389 PNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQM 448
              L                       F  L  +  L ++ N L+         +T+L+ 
Sbjct: 468 ETELC-------------------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508

Query: 449 LNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIP 508
           L+L  N  +  L  +     LE LD+S N+     P  F  LS L    I+ NK   +  
Sbjct: 509 LSLNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLD---ITHNKFICECE 564

Query: 509 E----ELSSCKKLVSLDLSNNQLSGHIPASLSEMPVL 541
                   +   +       +    + P S S + + 
Sbjct: 565 LSTFINWLNHTNVTIAGPPADIYCVY-PDSFSGVSLF 600

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  210 bits (536), Expect = 1e-58
 Identities = 105/545 (19%), Positives = 204/545 (37%), Gaps = 60/545 (11%)

Query: 111 SLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVG 170
           +    +  + +FT  +P G  + ++ LDLS N ++     ++ + + L+VL L  + +  
Sbjct: 6   ASGVCDGRSRSFTS-IPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 64

Query: 171 EIPLSISNITSLQIFTLASNQLIGSIPRE-IGQLRNLKWIYLGYNNLSG-EIPKEIGDLT 228
               +  ++ SL+   L+ N L  S+     G L +LK++ L  N      +     +LT
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 229 SLNHLDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNY 287
           +L  L +       +I    F  L++L  L +    L     +S+  ++ +    L  + 
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 288 LSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSG--------- 338
            +  +      L ++  L L   N      S L        ++  + + S          
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 339 -EIPSNLGKQNNLTVIDLSTNFLT---GKIPETLCDSG-----SLFKLILFSNSLEGKIP 389
            ++   + + + +   D + N L        + + + G     ++ +L +    L   + 
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 390 NSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQ---KWEMTSL 446
              S  + ++R+ ++N+++     S    L  + FLD+S N +     +    K    SL
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 447 QMLNLAGNNFS--GKLPDSF-GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKL 503
           Q L L+ N+     K  +       L +LD+S N F   +P S     ++  L +S   +
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422

Query: 504 FGDIPEELSSC--KKLVSLDLSNNQLSGHIPASLSE-------------------MPVLG 542
                  + +C  + L  LD+SNN L       L                      PVL 
Sbjct: 423 -----RVVKTCIPQTLEVLDVSNNNLD-SFSLFLPRLQELYISRNKLKTLPDASLFPVLL 476

Query: 543 QLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAF---LAINATAVAGNDLC 599
            + +S NQL         R+ SL ++ +  N +  S P        L  N+    G+  C
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 536

Query: 600 GGDST 604
            G   
Sbjct: 537 SGSGK 541

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  185 bits (472), Expect = 3e-50
 Identities = 79/456 (17%), Positives = 153/456 (33%), Gaps = 44/456 (9%)

Query: 130 SLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLAS 189
           S     + D  +   +  IP  +   + +K LDL  N            IT +       
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFN-----------KITYIG------ 42

Query: 190 NQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLTGQIPPSF 248
                    ++    NL+ + L  + ++  I  +    L SL HLDL  N+L+      F
Sbjct: 43  -------HGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94

Query: 249 GNLSNLRYLFLYQNKLTG-SIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILH 306
           G LS+L+YL L  N      +      L +L +  + +     EI       L +L  L 
Sbjct: 95  GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154

Query: 307 LFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPE 366
           + + +       SL S+  +  L L  ++ +  +       +++  ++L    L      
Sbjct: 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS 214

Query: 367 TLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLD 426
            L        +   +         S +    L R  L+ + +       F    L    D
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGD 268

Query: 427 ISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPR 485
            + ++        K E  +++ L++        L   +   ++++ + +  ++       
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328

Query: 486 SFGRLSELMQLKISRNKL---FGDIPEELSSCKKLVSLDLSNNQLS--GHIPASLSEMPV 540
               L  L  L +S N +   +        +   L +L LS N L         L  +  
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388

Query: 541 LGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFH 576
           L  LD+S N     +P +      +  +N+S     
Sbjct: 389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  146 bits (371), Expect = 3e-37
 Identities = 72/378 (19%), Positives = 136/378 (35%), Gaps = 40/378 (10%)

Query: 58  QNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNL 117
              T +N +E+ A ++    S S+  +  +  + L  ++ +  +        +S+R+L L
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLEL 203

Query: 118 SNNNFTG-------------PVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLG 164
            + N                P+   +     + D S N L  K+   I   S ++  D  
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL-KLLRYILELSEVEFDDCT 262

Query: 165 GNVLVGEIPLSISNI--------TSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNL 216
            N L    P     +         +++   +    L   +      L  +K I +  + +
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

Query: 217 SGEIPKEIGD-LTSLNHLDLVYNNLTGQIPPS---FGNLSNLRYLFLYQNKLT--GSIPK 270
              +P      L SL  LDL  N +  +   +    G   +L+ L L QN L       +
Sbjct: 323 F-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 271 SILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQ 330
            +L LK+L S D+S N     +P+     + +  L+L S      + + +     L+VL 
Sbjct: 382 ILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLD 437

Query: 331 LWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPN 390
           + +N         L     L  + +S N L   +P+       L  + +  N L+     
Sbjct: 438 VSNNNLD-SFSLFL---PRLQELYISRNKLK-TLPDASLFP-VLLVMKISRNQLKSVPDG 491

Query: 391 SLSTCKSLRRVRLQNNRL 408
                 SL+++ L  N  
Sbjct: 492 IFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  134 bits (340), Expect = 3e-33
 Identities = 58/320 (18%), Positives = 121/320 (37%), Gaps = 24/320 (7%)

Query: 3   NNSILFMFLFLSFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTH 62
            ++ L  F F        +     L+F+ +V    +F           + + +   + T 
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 63  VNAIELSAKNISGKISSSIF-HLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNN 121
            N +     + S  +S         +  +++    L     S ++S    ++ + + N+ 
Sbjct: 264 -NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSK 321

Query: 122 FTGPVPIGS---LSRLEILDLSNNMLSGKIPEEIGSFSG---LKVLDLGGNVL--VGEIP 173
               VP      L  LE LDLS N++  +  +          L+ L L  N L  + +  
Sbjct: 322 VFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380

Query: 174 LSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHL 233
             +  + +L    ++ N     +P        ++++ L    +   +   I    +L  L
Sbjct: 381 EILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVL 436

Query: 234 DLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIP 293
           D+  NNL          L  L+ L++ +NKL  ++P + L    L+   +S N L   +P
Sbjct: 437 DVSNNNLD-SFSL---FLPRLQELYISRNKLK-TLPDASL-FPVLLVMKISRNQLK-SVP 489

Query: 294 EEVIQ-LQNLEILHLFSNNF 312
           + +   L +L+ + L +N +
Sbjct: 490 DGIFDRLTSLQKIWLHTNPW 509

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  201 bits (513), Expect = 1e-57
 Identities = 71/346 (20%), Positives = 142/346 (41%), Gaps = 22/346 (6%)

Query: 64  NAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFT 123
             I    +  S     +   L  +  + ++  +++  I         +L +LNL+ N  T
Sbjct: 23  EGIRAVLQKASVTDVVTQEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQIT 79

Query: 124 GPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQ 183
              P+ +L +L  L +  N ++      + + + L+ L L  + +    PL  +N+T + 
Sbjct: 80  DISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISPL--ANLTKMY 135

Query: 184 IFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQ 243
              L +N  +  +   +  +  L ++ +  + +    P  I +LT L  L L YN +   
Sbjct: 136 SLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192

Query: 244 IPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLE 303
            P    +L++L Y   Y N++T   P  +  +  L S  + +N ++   P     L  L 
Sbjct: 193 SP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLA--NLSQLT 246

Query: 304 ILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGK 363
            L + +N  +    +++  + KL++L + SNQ S    S L   + L  + L+ N L  +
Sbjct: 247 WLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNE 302

Query: 364 IPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLS 409
             E +    +L  L L  N +    P  L++   +      N  + 
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  198 bits (507), Expect = 8e-57
 Identities = 78/371 (21%), Positives = 151/371 (40%), Gaps = 30/371 (8%)

Query: 89  SINLSSNQLSGEIPSDIFSSSN--SLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSG 146
           ++      ++      IF  ++        L   + T  V    L  +  L ++   ++ 
Sbjct: 4   TLATLPAPIN-----QIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVAS 58

Query: 147 KIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNL 206
              + I   + L+ L+L GN +    PL  SN+  L    + +N++  +    +  L NL
Sbjct: 59  --IQGIEYLTNLEYLNLNGNQITDISPL--SNLVKLTNLYIGTNKI--TDISALQNLTNL 112

Query: 207 KWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTG 266
           + +YL  +N+S   P  + +LT +  L+L  N+          N++ L YL + ++K+  
Sbjct: 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKD 169

Query: 267 SIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKL 326
             P  I  L  L S  L+ N +    P  +  L +L     + N  T   P  +A+M +L
Sbjct: 170 VTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRL 223

Query: 327 QVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEG 386
             L++ +N+ +    S L   + LT +++ TN ++      + D   L  L + SN +  
Sbjct: 224 NSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD 279

Query: 387 KIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSL 446
              + L+    L  + L NN+L  E       L  +  L +S N ++         ++ +
Sbjct: 280 --ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLAS--LSKM 335

Query: 447 QMLNLAGNNFS 457
              + A     
Sbjct: 336 DSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  197 bits (504), Expect = 2e-56
 Identities = 69/355 (19%), Positives = 139/355 (39%), Gaps = 24/355 (6%)

Query: 79  SSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILD 138
                L       L    ++  +         S+  L ++         I  L+ LE L+
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVASIQGIEYLTNLEYLN 72

Query: 139 LSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPR 198
           L+ N ++   P  + +   L  L +G N +      ++ N+T+L+   L  + +    P 
Sbjct: 73  LNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP- 127

Query: 199 EIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLF 258
            +  L  +  + LG N+        + ++T LN+L +  + +   + P   NL++L  L 
Sbjct: 128 -LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLS 183

Query: 259 LYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPS 318
           L  N++    P  +  L SL  F    N ++   P  V  +  L  L + +N  T    S
Sbjct: 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LS 237

Query: 319 SLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLI 378
            LA++ +L  L++ +NQ S    + +     L ++++ +N ++      L +   L  L 
Sbjct: 238 PLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLF 293

Query: 379 LFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLS 433
           L +N L  +    +    +L  + L  N ++         L  +   D +   + 
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  191 bits (487), Expect = 4e-54
 Identities = 72/397 (18%), Positives = 152/397 (38%), Gaps = 52/397 (13%)

Query: 157 GLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNL 216
           G   L      +    P +  ++       L    +   +     +L ++  + +    +
Sbjct: 1   GAATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 217 SGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLK 276
           +    + I  LT+L +L+L  N +T   P    NL  L  L++  NK+T     ++  L 
Sbjct: 57  AS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLT 110

Query: 277 SLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQF 336
           +L    L+++ +S      +  L  +  L+L +N+      S L++M  L  L +  ++ 
Sbjct: 111 NLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKV 167

Query: 337 SGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCK 396
                + +    +L  + L+ N +    P  L    SL     + N +    P  ++   
Sbjct: 168 KD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMT 221

Query: 397 SLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNF 456
            L  +++ NN+++                D+S   L+         ++ L  L +  N  
Sbjct: 222 RLNSLKIGNNKIT----------------DLSP--LAN--------LSQLTWLEIGTNQI 255

Query: 457 SGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCK 515
           S    ++     +L+ L++  N+ S         LS+L  L ++ N+L  +  E +    
Sbjct: 256 SD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

Query: 516 KLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLS 552
            L +L LS N ++   P  L+ +  +   D +   + 
Sbjct: 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  192 bits (489), Expect = 1e-54
 Identities = 52/318 (16%), Positives = 112/318 (35%), Gaps = 22/318 (6%)

Query: 56  SCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFL 115
              +S+    +              +       + + +    +    +     SN+ +  
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-----SNNPQIE 61

Query: 116 NLSNNNFTG-PVPIGSLSR--LEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEI 172
             +          +   ++     L+L +  L  + P++    S L+ + +    L+ E+
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 173 PLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIG------- 225
           P ++     L+  TLA N L  ++P  I  L  L+ + +       E+P+ +        
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 226 --DLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDL 283
              L +L  L L +  +   +P S  NL NL+ L +  + L+ ++  +I  L  L   DL
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDL 236

Query: 284 SDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSN 343
                    P        L+ L L   +    +P  +  + +L+ L L        +PS 
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 344 LGKQNNLTVIDLSTNFLT 361
           + +     +I +  +   
Sbjct: 297 IAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  187 bits (477), Expect = 6e-53
 Identities = 52/289 (17%), Positives = 110/289 (38%), Gaps = 16/289 (5%)

Query: 67  ELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDI-FSSSNSLRFLNLSNNNFTG- 124
                + +   S+      +   I   + +        +  ++      L L +      
Sbjct: 37  RHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQF 96

Query: 125 PVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQI 184
           P     LS L+ + +    L  ++P+ +  F+GL+ L L  N L   +P SI+++  L+ 
Sbjct: 97  PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154

Query: 185 FTLASNQLIGSIPREIGQ---------LRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDL 235
            ++ +   +  +P  +           L NL+ + L +  +   +P  I +L +L  L +
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI 213

Query: 236 VYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEE 295
             + L+  + P+  +L  L  L L       + P    G   L    L D      +P +
Sbjct: 214 RNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272

Query: 296 VIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNL 344
           + +L  LE L L       ++PS +A +P   ++ +       ++  + 
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  175 bits (447), Expect = 6e-49
 Identities = 60/255 (23%), Positives = 99/255 (38%), Gaps = 20/255 (7%)

Query: 84  LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTG-PVPIGSLSRLEILDLSNN 142
            P   ++ L S  L  + P   F  S+ L+ + +        P  +   + LE L L+ N
Sbjct: 80  QPGRVALELRSVPLP-QFPDQAFRLSH-LQHMTIDAAGLMELPDTMQQFAGLETLTLARN 137

Query: 143 MLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNI---------TSLQIFTLASNQLI 193
            L   +P  I S + L+ L +     + E+P  +++           +LQ   L    + 
Sbjct: 138 PLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

Query: 194 GSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSN 253
            S+P  I  L+NLK + +  + LS  +   I  L  L  LDL         PP FG  + 
Sbjct: 197 -SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254

Query: 254 LRYLFLY-QNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSN-- 310
           L+ L L   + L  ++P  I  L  L   DL        +P  + QL    I+ +  +  
Sbjct: 255 LKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

Query: 311 -NFTGKIPSSLASMP 324
                  P +  + P
Sbjct: 314 AQLDQHRPVARPAEP 328

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  174 bits (443), Expect = 2e-48
 Identities = 64/390 (16%), Positives = 117/390 (30%), Gaps = 79/390 (20%)

Query: 156 SGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNN 215
           SG + L   G+  +      +S                           N +        
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGRA 67

Query: 216 LSGEIPKEIGDLTSLN--HLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSIL 273
           L       + D T      L+L    L  Q P     LS+L+++ +    L   +P ++ 
Sbjct: 68  LK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124

Query: 274 GLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWS 333
               L +  L+ N L   +P  +  L  L  L + +     ++P  LAS           
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST---------- 173

Query: 334 NQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLS 393
                +         NL  + L    +                           +P S++
Sbjct: 174 -----DASGEHQGLVNLQSLRLEWTGIR-------------------------SLPASIA 203

Query: 394 TCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAG 453
             ++L+ ++++N+ LS  L      L                          L+ L+L G
Sbjct: 204 NLQNLKSLKIRNSPLS-ALGPAIHHL------------------------PKLEELDLRG 238

Query: 454 NNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELS 512
                  P  FG    L+ L L +     T+P    RL++L +L +        +P  ++
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298

Query: 513 SCKKLVSLDLSNN---QLSGHIPASLSEMP 539
                  + +  +   QL  H P +    P
Sbjct: 299 QLPANCIILVPPHLQAQLDQHRPVARPAEP 328

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  169 bits (430), Expect = 1e-46
 Identities = 50/363 (13%), Positives = 115/363 (31%), Gaps = 52/363 (14%)

Query: 193 IGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLS 252
           +GS           + +Y   +         +       + D    +          N +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSN 56

Query: 253 NLRYLFLYQNKLTGSIPKSI--LGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSN 310
           N +        L  +    +        V+ +L    L  + P++  +L +L+ + + + 
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114

Query: 311 NFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCD 370
               ++P ++     L+ L L  N     +P+++   N L  + +       ++PE L  
Sbjct: 115 GLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 371 SGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGN 430
           +                         +L+ +RL+   +   L +    L           
Sbjct: 173 T---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANL----------- 205

Query: 431 DLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGR 489
                         +L+ L +  +  S  L  +     +LE LDL         P  FG 
Sbjct: 206 -------------QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251

Query: 490 LSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSEN 549
            + L +L +        +P ++    +L  LDL        +P+ ++++P    + +  +
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

Query: 550 QLS 552
             +
Sbjct: 312 LQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  137 bits (348), Expect = 8e-36
 Identities = 52/329 (15%), Positives = 97/329 (29%), Gaps = 48/329 (14%)

Query: 266 GSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPK 325
           GS            +     +       +    L   +  +    N         A+   
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHD---VLSQWQRHYNADRNRW-HSAWRQANSNN 57

Query: 326 LQVLQLWSNQFSGEIPSNLG--KQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNS 383
            Q+               L    Q     ++L +  L  + P+       L  + + +  
Sbjct: 58  PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 384 LEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEM 443
           L  ++P+++     L  + L  N L   L +    L                        
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASL------------------------ 149

Query: 444 TSLQMLNLAGNNFSGKLPDSFGSD----------QLENLDLSENRFSGTIPRSFGRLSEL 493
             L+ L++       +LP+   S            L++L L       ++P S   L  L
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL 208

Query: 494 MQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSE-NQLS 552
             LKI  + L   +   +    KL  LDL       + P        L +L L + + L 
Sbjct: 209 KSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 553 GKIPQTLGRVASLVQVNISHNHFHGSLPS 581
             +P  + R+  L ++++        LPS
Sbjct: 268 -TLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (278), Expect = 2e-26
 Identities = 42/293 (14%), Positives = 77/293 (26%), Gaps = 52/293 (17%)

Query: 293 PEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTV 352
                     E L+   +         L+   +        ++            NN  +
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNA----DRNRWHSAWRQANSNNPQI 60

Query: 353 IDLSTNFLTGKIPETL--CDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSG 410
              +   L     + L          L L S  L  + P+       L+ + +    L  
Sbjct: 61  ETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM- 117

Query: 411 ELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS-DQL 469
           EL     +                           L+ L LA N     LP S  S ++L
Sbjct: 118 ELPDTMQQF------------------------AGLETLTLARNPLR-ALPASIASLNRL 152

Query: 470 ENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSG 529
             L +        +P                         E      L SL L    +  
Sbjct: 153 RELSIRACPELTELPEPLASTD---------------ASGEHQGLVNLQSLRLEWTGIR- 196

Query: 530 HIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST 582
            +PAS++ +  L  L +  + LS  +   +  +  L ++++       + P  
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPI 248

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  181 bits (461), Expect = 5e-51
 Identities = 62/305 (20%), Positives = 117/305 (38%), Gaps = 19/305 (6%)

Query: 77  ISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTG--PVPIGSLSRL 134
           I     +    +   ++ + L  +  + +  S+ +++ L+LS N  +      +   ++L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 135 EILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIG 194
           E+L+LS+N+L      ++ S S L+ LDL  N +       +    S++    A+N  I 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN-IS 112

Query: 195 SIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG-QIPPSFGNLSN 253
            +    GQ    K IYL  N ++     + G  + + +LDL  N +          +   
Sbjct: 113 RVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 254 LRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFT 313
           L +L L  N +   +   ++    L + DLS N L+  +  E      +  + L +N   
Sbjct: 171 LEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 314 GKIPSSLASMPKLQVLQLWSNQFS-GEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSG 372
             I  +L     L+   L  N F  G +     K   +  +   T        E  C   
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 373 SLFKL 377
           +L   
Sbjct: 287 TLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  174 bits (443), Expect = 1e-48
 Identities = 65/311 (20%), Positives = 118/311 (37%), Gaps = 21/311 (6%)

Query: 58  QNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNL 117
           QN       +++  ++   ++S      +V+ ++LS N LS +I +   +    L  LNL
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNL 65

Query: 118 SNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSIS 177
           S+N     + + SLS L  LDL+NN +      E+     ++ L    N +   +  S  
Sbjct: 66  SSNVLYETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSCSR- 118

Query: 178 NITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSG-EIPKEIGDLTSLNHLDLV 236
                +   LA+N++      + G    ++++ L  N +      +      +L HL+L 
Sbjct: 119 -GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 237 YNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEV 296
           YN +   +       + L+ L L  NKL   +         +    L +N L   I + +
Sbjct: 178 YNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

Query: 297 IQLQNLEILHLFSNNFT-GKIPSSLASMPKLQVLQLWSNQFSGEIPS------NLGKQNN 349
              QNLE   L  N F  G +    +   ++Q +   + +              LG    
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

Query: 350 LTVIDLSTNFL 360
               DL   F 
Sbjct: 294 YCCEDLPAPFA 304

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  173 bits (441), Expect = 2e-48
 Identities = 57/328 (17%), Positives = 122/328 (37%), Gaps = 26/328 (7%)

Query: 103 SDIFSSSNSLRFLNLSNNNFTG--PVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKV 160
            +I  + N  +   +++++          S   ++ LDLS N LS     ++  F+ L++
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 161 LDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEI 220
           L+L  NVL  E    + ++++L+   L +N +     +E+    +++ ++   NN+S  +
Sbjct: 63  LNLSSNVLY-ETL-DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 221 PKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTG-SIPKSILGLKSLV 279
                      ++ L  N +T       G  S ++YL L  N++   +  +      +L 
Sbjct: 115 SCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 280 SFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGE 339
             +L  N++  ++  + +    L+ L L SN     +     S   +  + L +N+    
Sbjct: 173 HLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 340 IPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLR 399
           I   L    NL   DL  N             G+L      +  ++     ++       
Sbjct: 229 IEKALRFSQNLEHFDLRGNGF---------HCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 400 RVRLQNNRLSGELSSEFTRLPLVYFLDI 427
                   L    +     LP  +   +
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPFADRL 307

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  167 bits (424), Expect = 5e-46
 Identities = 70/354 (19%), Positives = 119/354 (33%), Gaps = 44/354 (12%)

Query: 128 IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL 187
             + +R +I  ++++ L   +     S   +K LDL GN L       ++  T L++  L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 188 ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS 247
           +SN  +     ++  L  L+ + L  N +      E+    S+  L    NN++ ++  S
Sbjct: 66  SSNV-LYETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCS 117

Query: 248 FGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSG-EIPEEVIQLQNLEILH 306
                  + ++L  NK+T            +   DL  N +      E       LE L+
Sbjct: 118 --RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 307 LFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPE 366
           L  N     +        KL+ L L SN+ +  +         +T I L  N L   I +
Sbjct: 176 LQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 367 TLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLD 426
            L  S +L    L  N            C +LR    +N R+         +L       
Sbjct: 232 ALRFSQNLEHFDLRGNGF---------HCGTLRDFFSKNQRVQTVAKQTVKKLT------ 276

Query: 427 ISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFS 480
                       Q  E  ++  L   G      LP  F       + L  +   
Sbjct: 277 -----------GQNEEECTVPTLGHYGAYCCEDLPAPFA---DRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  162 bits (413), Expect = 1e-44
 Identities = 59/330 (17%), Positives = 110/330 (33%), Gaps = 17/330 (5%)

Query: 172 IPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLN 231
           I     N    +I  +  + L  ++        N+K + L  N LS     ++   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 232 HLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGE 291
            L+L  N L         +LS LR L L  N +       +L   S+ +   ++N +S  
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-R 113

Query: 292 IPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSG-EIPSNLGKQNNL 350
           +       Q  + ++L +N  T           ++Q L L  N+             + L
Sbjct: 114 VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 351 TVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSG 410
             ++L  NF+   +   +  +  L  L L SN L   +     +   +  + L+NN+L  
Sbjct: 172 EHLNLQYNFIY-DVKGQVVFA-KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 411 ELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLE 470
            +         +   D+ GN        + +   + ++  +A          +     + 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 471 NLDLSENRFSGTIPRSFG-RLSELMQLKIS 499
            L          +P  F  RL  L      
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  152 bits (385), Expect = 8e-41
 Identities = 60/335 (17%), Positives = 120/335 (35%), Gaps = 20/335 (5%)

Query: 195 SIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNL 254
           +I          K   +  ++L   +        ++  LDL  N L+          + L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 255 RYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTG 314
             L L  N L       +  L +L + DL++NY+  E+        ++E LH  +NN + 
Sbjct: 61  ELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQ-ELL----VGPSIETLHAANNNIS- 112

Query: 315 KIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTG-KIPETLCDSGS 373
           ++  S       + + L +N+ +     + G ++ +  +DL  N +      E    S +
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 374 LFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLS 433
           L  L L  N +   +   +     L+ + L +N+L+  +  EF     V ++ +  N L 
Sbjct: 171 LEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 434 GRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSEL 493
             I +      +L+  +L GN F       F S       +++      +         +
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTV 285

Query: 494 MQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLS 528
             L         D+P       +L  + L ++   
Sbjct: 286 PTLGHYGAYCCEDLPA--PFADRL--IALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  140 bits (356), Expect = 6e-37
 Identities = 54/333 (16%), Positives = 99/333 (29%), Gaps = 84/333 (25%)

Query: 220 IPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLV 279
           I +   +        +  ++L   +     +  N++ L L  N L+      +     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 280 SFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGE 339
             +LS N L  E  + +  L  L  L L +N         L   P ++ L   +N  S  
Sbjct: 62  LLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-R 113

Query: 340 IPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLR 399
           +  + G+      I L+ N +T  +                                 ++
Sbjct: 114 VSCSRGQ--GKKNIYLANNKIT-MLR-----------------------DLDEGCRSRVQ 147

Query: 400 RVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGK 459
            + L+ N +                  ++  +L+           +L+ LNL  N     
Sbjct: 148 YLDLKLNEID----------------TVNFAELAAS-------SDTLEHLNLQYNFIY-D 183

Query: 460 LPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVS 519
           +       +L+ LDLS N+ +                          +  E  S   +  
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLA-------------------------FMGPEFQSAAGVTW 218

Query: 520 LDLSNNQLSGHIPASLSEMPVLGQLDLSENQLS 552
           + L NN+L   I  +L     L   DL  N   
Sbjct: 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.4 bits (238), Expect = 2e-21
 Identities = 35/192 (18%), Positives = 68/192 (35%), Gaps = 12/192 (6%)

Query: 396 KSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNN 455
              +  ++ ++ L   L+S       V  LD+SGN LS          T L++LNL+ N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 456 FSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCK 515
              +  D      L  LDL+ N               +  L  + N +   +       +
Sbjct: 70  LY-ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSCSR--GQ 120

Query: 516 KLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSG-KIPQTLGRVASLVQVNISHNH 574
              ++ L+NN+++            +  LDL  N++      +      +L  +N+ +N 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 575 FHGSLPSTGAFL 586
            +  +       
Sbjct: 181 IY-DVKG-QVVF 190

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 483 IPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLG 542
           I       +     K++ + L   +     S   +  LDLS N LS    A L+    L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 543 QLDLSENQLSGKIPQTLGRVASLVQVNISHNH 574
            L+LS N L       L  +++L  +++++N+
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNY 91

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  177 bits (451), Expect = 4e-47
 Identities = 88/431 (20%), Positives = 145/431 (33%), Gaps = 71/431 (16%)

Query: 131 LSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASN 190
            +   +L++  + L+  +P+ + +   +  L +  N L   +P     + +L    ++ N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPELRTL---EVSGN 91

Query: 191 QLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGN 250
           QL  S+P     L  L        +L           + L  L +  N LT  +P     
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT-SLPVLPPG 142

Query: 251 L-----------------SNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIP 293
           L                 S L  L+ Y N+LT S+P    GL+ L    +SDN L+  +P
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLPMLPSGLQEL---SVSDNQLA-SLP 197

Query: 294 EEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVI 353
               +L  L   +   N  T  +P+  +    L+ L +  N+ +  +P        L  +
Sbjct: 198 TLPSELYKLWAYN---NRLT-SLPALPSG---LKELIVSGNRLT-SLPVLPS---ELKEL 246

Query: 354 DLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELS 413
            +S N LT  +P        L  L ++ N L  ++P SL    S   V L+ N LS    
Sbjct: 247 MVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301

Query: 414 SEFTRLPLVYFLD---ISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSG----KLPDSFGS 466
                +          I  +        +   +       L                FG 
Sbjct: 302 QALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQ 361

Query: 467 DQ------LENLDLSENRFSGTIPRSFGRLSE-LMQLKIS---RNKLFGDIPEELSSCKK 516
           +       L    LSE            ++S  L QL      R   F    E  SSC+ 
Sbjct: 362 EDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALRANTFAMATEATSSCED 421

Query: 517 LVSLDLSNNQL 527
            V+  L   + 
Sbjct: 422 RVTFFLHQMKN 432

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  160 bits (407), Expect = 2e-41
 Identities = 78/373 (20%), Positives = 137/373 (36%), Gaps = 72/373 (19%)

Query: 214 NNLSGEIPKEIGD--LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKS 271
           +     + +++          L++  + LT  +P       ++  L +  N LT S+P  
Sbjct: 24  SRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPAL 79

Query: 272 ILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQL 331
              L++L   ++S N L+  +P     L  L I      +    +P+  +    L  L +
Sbjct: 80  PPELRTL---EVSGNQLT-SLPVLPPGLLELSIFSNPLTH----LPALPSG---LCKLWI 128

Query: 332 WSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNS 391
           + NQ +  +P        L  + +S N L   +P        L KL  ++N L   +P  
Sbjct: 129 FGNQLT-SLPVLPP---GLQELSVSDNQLA-SLPALP---SELCKLWAYNNQLT-SLPML 179

Query: 392 LSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNL 451
            S    L+ + + +N+L          LP                       + L  L  
Sbjct: 180 PS---GLQELSVSDNQL--------ASLPT--------------------LPSELYKLWA 208

Query: 452 AGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEEL 511
             N  +  LP       L+ L +S NR + ++P     L ELM   +S N+L   +P   
Sbjct: 209 YNNRLT-SLPALPSG--LKELIVSGNRLT-SLPVLPSELKELM---VSGNRL-TSLPMLP 260

Query: 512 SSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLS---GKIPQTLGRVASLVQV 568
           S    L+SL +  NQL+  +P SL  +     ++L  N LS    +  + +         
Sbjct: 261 SG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGP 316

Query: 569 NISHNHFHGSLPS 581
            I  +    S P 
Sbjct: 317 IIRFDMAGASAPR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  158 bits (401), Expect = 1e-40
 Identities = 80/349 (22%), Positives = 126/349 (36%), Gaps = 70/349 (20%)

Query: 203 LRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQN 262
                 + +G + L+  +P  +     +  L +  NNLT  +P     L   R L +  N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPEL---RTLEVSGN 91

Query: 263 KLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLAS 322
           +LT S+P    GL  L  F     +L             L  L +F N  T  +P     
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-SLPVLP-- 140

Query: 323 MPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSN 382
            P LQ L +  NQ +  +P+       L  +    N LT  +P        L +L +  N
Sbjct: 141 -PGLQELSVSDNQLA-SLPALPS---ELCKLWAYNNQLT-SLPMLP---SGLQELSVSDN 191

Query: 383 SLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWE 442
            L   +P   S    L ++   NNRL        T LP                      
Sbjct: 192 QLA-SLPTLPS---ELYKLWAYNNRL--------TSLP--------------------AL 219

Query: 443 MTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNK 502
            + L+ L ++GN  +  LP      +L+ L +S NR + ++P     L  L    + RN+
Sbjct: 220 PSGLKELIVSGNRLTS-LPVLPS--ELKELMVSGNRLT-SLPMLPSGLLSL---SVYRNQ 272

Query: 503 LFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQL 551
           L   +PE L       +++L  N LS     +L E   +         +
Sbjct: 273 L-TRLPESLIHLSSETTVNLEGNPLSERTLQALRE---ITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  143 bits (361), Expect = 1e-35
 Identities = 61/302 (20%), Positives = 105/302 (34%), Gaps = 37/302 (12%)

Query: 76  KISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLE 135
            +      L  +   +     L              L  L +  N  T  +P      L+
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLPALPSG--------LCKLWIFGNQLTS-LP-VLPPGLQ 144

Query: 136 ILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGS 195
            L +S+N L+  +P        L  L    N L   +P+  S +  L   +++ NQL  S
Sbjct: 145 ELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPSGLQEL---SVSDNQLA-S 195

Query: 196 IPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLR 255
           +P    +L  L   +   N L+  +P        L  L +  N LT  +P      S L+
Sbjct: 196 LPTLPSELYKL---WAYNNRLT-SLPALPS---GLKELIVSGNRLT-SLPVL---PSELK 244

Query: 256 YLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGK 315
            L +  N+LT S+P    GL SL    +  N L+  +PE +I L +   ++L  N  + +
Sbjct: 245 ELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299

Query: 316 IPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLF 375
              +L  +           +F     S   +   L     + ++L          +    
Sbjct: 300 TLQALREITSAPGYSGPIIRFDMAGASAPRETRALH--LAAADWLVPAREGEPAPADRWH 357

Query: 376 KL 377
             
Sbjct: 358 MF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  124 bits (312), Expect = 2e-29
 Identities = 54/261 (20%), Positives = 97/261 (37%), Gaps = 31/261 (11%)

Query: 84  LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNM 143
            P ++ +++S NQL+  +P+        L  L   NN  T  +P+   S L+ L +S+N 
Sbjct: 140 PPGLQELSVSDNQLA-SLPALPSE----LCKLWAYNNQLTS-LPM-LPSGLQELSVSDNQ 192

Query: 144 LSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQL 203
           L+  +P        L  L    N L   +P   S +  L    ++ N+L  S+P    +L
Sbjct: 193 LA-SLPTLPSE---LYKLWAYNNRLT-SLPALPSGLKEL---IVSGNRL-TSLPVLPSEL 243

Query: 204 RNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNK 263
           + L    +  N L+  +P     L     L +  N LT ++P S  +LS+   + L  N 
Sbjct: 244 KEL---MVSGNRLT-SLPMLPSGLL---SLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295

Query: 264 LTGSIPKSILGLKSLVSFD---LSDNYLSGEIPEEVIQLQNLEILHLFSNNFTG----KI 316
           L+    +++  + S   +    +  +      P E   L       L             
Sbjct: 296 LSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADR 355

Query: 317 PSSLASMPKLQVLQLWSNQFS 337
                         L+ ++ S
Sbjct: 356 WHMFGQEDNADAFSLFLDRLS 376

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  167 bits (426), Expect = 2e-45
 Identities = 79/423 (18%), Positives = 150/423 (35%), Gaps = 57/423 (13%)

Query: 100 EIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLK 159
            +  D       +   ++   +        +L+  +I+   N+ +  K+P  +       
Sbjct: 16  NLQYDCVFYDVHI---DMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAAL--LDSF- 68

Query: 160 VLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSG 218
                                 +++  L   Q I  I          ++ +Y+G+N +  
Sbjct: 69  --------------------RQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIR- 106

Query: 219 EIPKEI-GDLTSLNHLDLVYNNLTGQIPPS-FGNLSNLRYLFLYQNKLTGSIPKSIL-GL 275
            +P  +  ++  L  L L  N+L+  +P   F N   L  L +  N L   I        
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQAT 164

Query: 276 KSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQ 335
            SL +  LS N L+  +      + +L   ++  N  +     +LA    ++ L    N 
Sbjct: 165 TSLQNLQLSSNRLT-HVDLS--LIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS 216

Query: 336 FSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTC 395
            +  +   +     LT++ L  N LT      L +   L ++ L  N LE  + +     
Sbjct: 217 IN-VVRGPV--NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 396 KSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNN 455
           + L R+ + NNRL   L+     +P +  LD+S N L   +   + +   L+ L L  N+
Sbjct: 272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329

Query: 456 FSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSS-- 513
                  +     L+NL LS N +     R+      + +  +        I  +L    
Sbjct: 330 IVTLKLSTH--HTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGL 385

Query: 514 -CK 515
            CK
Sbjct: 386 CCK 388

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  167 bits (424), Expect = 3e-45
 Identities = 76/395 (19%), Positives = 149/395 (37%), Gaps = 29/395 (7%)

Query: 172 IPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEI-GDLTSL 230
           I  ++          +           E   L N K +    + +  ++P  +      +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 231 NHLDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYL 288
             L+L    +  +I   +F     ++ L++  N +   +P  +   +  L    L  N L
Sbjct: 72  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 129

Query: 289 SGEIPEEVIQ-LQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQ 347
           S  +P  +      L  L + +NN       +  +   LQ LQL SN+ +  +  +L   
Sbjct: 130 S-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIP- 186

Query: 348 NNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNR 407
            +L   ++S N L+     TL    ++ +L    NS+   +   +     L  ++LQ+N 
Sbjct: 187 -SLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNN 237

Query: 408 LSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS- 466
           L+   ++     P +  +D+S N+L   +     +M  L+ L ++ N     L       
Sbjct: 238 LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 294

Query: 467 DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQ 526
             L+ LDLS N     + R+  +   L  L +  N +   +   LS+   L +L LS+N 
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHND 350

Query: 527 LSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGR 561
              +   +L     + +  + +     KI   L  
Sbjct: 351 WDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  165 bits (419), Expect = 2e-44
 Identities = 76/414 (18%), Positives = 141/414 (34%), Gaps = 51/414 (12%)

Query: 195 SIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS-FGNLSN 253
            I   +        +++           E   L +   +    + +  ++P +   +   
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 70

Query: 254 LRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSNN 311
           +  L L   ++   I         ++    +  N +   +P  V Q +  L +L L  N+
Sbjct: 71  VELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 128

Query: 312 FTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQN-NLTVIDLSTNFLTGKIPETLCD 370
            +        + PKL  L + +N     I  +  +   +L  + LS+N LT  +  +L  
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIP 186

Query: 371 SGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGN 430
             SLF   +  N L      +L+   ++  +   +N ++                 + G 
Sbjct: 187 --SLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN----------------VVRGP 223

Query: 431 DLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRL 490
                          L +L L  NN +           L  +DLS N     +   F ++
Sbjct: 224 VNV-----------ELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 491 SELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQ 550
             L +L IS N+L   +         L  LDLS+N L  H+  +  +   L  L L  N 
Sbjct: 272 QRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329

Query: 551 LSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGNDL-CGGDS 603
           +   +   L    +L  + +SHN +  +      F  +   AV   D  C  D 
Sbjct: 330 IV-TLK--LSTHHTLKNLTLSHNDWDCN-SLRALFRNVARPAVDDADQHCKIDY 379

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  164 bits (418), Expect = 2e-44
 Identities = 74/338 (21%), Positives = 134/338 (39%), Gaps = 27/338 (7%)

Query: 53  NGISCQNSTHVNAIELSAKNISGKISSSIFH-LPHVESINLSSNQLSGEIPSDIFSSSNS 111
            G       +   +      +  K+ +++      VE +NL+  Q+  EI +  F+ +++
Sbjct: 37  FGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHT 94

Query: 112 LRFLNLSNNNFTG--PVPIGSLSRLEILDLSNNMLSGKIPEEI-GSFSGLKVLDLGGNVL 168
           ++ L +  N      P    ++  L +L L  N LS  +P  I  +   L  L +  N L
Sbjct: 95  IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL 153

Query: 169 VGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLT 228
                 +    TSLQ   L+SN+ +  +   +  + +L    + YN LS      +    
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLS-----TLAIPI 205

Query: 229 SLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYL 288
           ++  LD  +N++   +         L  L L  N LT      +L    LV  DLS N L
Sbjct: 206 AVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNEL 260

Query: 289 SGEIPEEV-IQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQ 347
             +I     +++Q LE L++ +N     +      +P L+VL L  N     +  N  + 
Sbjct: 261 E-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 317

Query: 348 NNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLE 385
           + L  + L  N +   +  +     +L  L L  N  +
Sbjct: 318 DRLENLYLDHNSIV-TLKLSTHH--TLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  107 bits (269), Expect = 5e-25
 Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 12/193 (6%)

Query: 72  NISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSL 131
           N+S  + S++     VE ++ S N ++  +   +      L  L L +NN T    + + 
Sbjct: 192 NVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPVNVE---LTILKLQHNNLTDTAWLLNY 247

Query: 132 SRLEILDLSNNMLSGKIPEEI-GSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASN 190
             L  +DLS N L  KI          L+ L +  N LV  + L    I +L++  L+ N
Sbjct: 248 PGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 305

Query: 191 QLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG-QIPPSFG 249
             +  + R   Q   L+ +YL +N++   +   +    +L +L L +N+     +   F 
Sbjct: 306 H-LLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFR 361

Query: 250 NLSNLRYLFLYQN 262
           N++        Q+
Sbjct: 362 NVARPAVDDADQH 374

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  170 bits (433), Expect = 7e-45
 Identities = 86/481 (17%), Positives = 162/481 (33%), Gaps = 56/481 (11%)

Query: 100 EIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLK 159
            +  D       +   ++   +        +L+  +I+   N+ +  K+P          
Sbjct: 22  NLQYDCVFYDVHI---DMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPA--ALLDSF- 74

Query: 160 VLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSG 218
                                 +++  L   Q I  I          ++ +Y+G+N +  
Sbjct: 75  --------------------RQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIR- 112

Query: 219 EIPKEI-GDLTSLNHLDLVYNNLTGQIPPS-FGNLSNLRYLFLYQNKLTGSIPKSIL-GL 275
            +P  +  ++  L  L L  N+L+  +P   F N   L  L +  N L   I        
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQAT 170

Query: 276 KSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQ 335
            SL +  LS N L+  +      + +L   ++  N  +     +LA    ++ L    N 
Sbjct: 171 TSLQNLQLSSNRLT-HVDLS--LIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS 222

Query: 336 FSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTC 395
            +  +   +     LT++ L  N LT      L +   L ++ L  N LE  + +     
Sbjct: 223 IN-VVRGPV--NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKM 277

Query: 396 KSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNN 455
           + L R+ + NNRL   L+     +P +  LD+S N L   +   + +   L+ L L  N+
Sbjct: 278 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335

Query: 456 FSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSS-- 513
                  +  +  L+NL LS N +     R+      + +  +        I  +L    
Sbjct: 336 IVTLKLSTHHT--LKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGL 391

Query: 514 CKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHN 573
           C K       +  L      S+ E     Q   S       +      +     V +  N
Sbjct: 392 CCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGN 451

Query: 574 H 574
            
Sbjct: 452 E 452

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  168 bits (427), Expect = 4e-44
 Identities = 90/540 (16%), Positives = 170/540 (31%), Gaps = 62/540 (11%)

Query: 49  FCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSS 108
            C  + +      +   I++  +++          L + + +   ++ +  ++P+ +  S
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYF--GFEDITLNNQKIVTFKNSTMR-KLPAALLDS 73

Query: 109 SNSLRFLNLSNNNFTG--PVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGN 166
              +  LNL++                ++ L +  N +   +P     F  +        
Sbjct: 74  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPP--HVFQNV-------- 122

Query: 167 VLVGEIPLSISNITSLQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEI- 224
                          L +  L  N  + S+PR I      L  + +  NNL   I  +  
Sbjct: 123 -------------PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTF 167

Query: 225 GDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLS 284
              TSL +L L  N LT  +      + +L +  +  N L+     ++    ++   D S
Sbjct: 168 QATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDAS 219

Query: 285 DNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSN- 343
            N ++  +   V     L IL L  NN T    + L + P L  + L  N+   +I  + 
Sbjct: 220 HNSIN-VVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHP 273

Query: 344 LGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRL 403
             K   L  + +S N L   +        +L  L L  N L   +  +      L  + L
Sbjct: 274 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331

Query: 404 QNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDS 463
            +N +     S    L     L +S ND        +    ++    +   +   K+   
Sbjct: 332 DHNSIVTLKLSTHHTLK---NLTLSHNDWDC--NSLRALFRNVARPAVDDADQHCKIDYQ 386

Query: 464 FGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLS 523
                                 +   + E +Q    R      I    S    +      
Sbjct: 387 LEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGV 446

Query: 524 NNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTG 583
             Q +  + A ++E      L     QL+ +  Q    +  L    I  N     LP  G
Sbjct: 447 PLQGNEQLEAEVNE------LRAEVQQLTNEQIQQEQLLQGL-HAEIDTNLRRYRLPKDG 499

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  162 bits (412), Expect = 4e-42
 Identities = 69/394 (17%), Positives = 131/394 (33%), Gaps = 49/394 (12%)

Query: 187 LASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP 246
                    I   +        +++           E   L +   +    + +  ++P 
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPA 68

Query: 247 S-FGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLE 303
           +   +   +  L L   ++   I         ++    +  N +   +P  V Q +  L 
Sbjct: 69  ALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 126

Query: 304 ILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQN-NLTVIDLSTNFLTG 362
           +L L  N+ +        + PKL  L + +N     I  +  +   +L  + LS+N LT 
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT- 184

Query: 363 KIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLV 422
            +  +L    SLF   +  N L      +L+   ++  +   +N +          +   
Sbjct: 185 HVDLSLIP--SLFHANVSYNLLS-----TLAIPIAVEELDASHNSI--------NVVRGP 229

Query: 423 YFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGT 482
                                  L +L L  NN +           L  +DLS N     
Sbjct: 230 VN-------------------VELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKI 269

Query: 483 IPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLG 542
           +   F ++  L +L IS N+L   +         L  LDLS+N L  H+  +  +   L 
Sbjct: 270 MYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 327

Query: 543 QLDLSENQLSGKIPQTLGRVASLVQVNISHNHFH 576
            L L  N +   +   L    +L  + +SHN + 
Sbjct: 328 NLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  111 bits (278), Expect = 3e-25
 Identities = 58/404 (14%), Positives = 126/404 (31%), Gaps = 39/404 (9%)

Query: 79  SSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILD 138
           S++     VE ++ S N ++  +   +      L  L L +NN T    + +   L  +D
Sbjct: 205 STLAIPIAVEELDASHNSIN-VVRGPVNVE---LTILKLQHNNLTDTAWLLNYPGLVEVD 260

Query: 139 LSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPR 198
           LS N L  KI      F  +                       L+   +++N+ + ++  
Sbjct: 261 LSYNELE-KIMY--HPFVKM---------------------QRLERLYISNNR-LVALNL 295

Query: 199 EIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLF 258
               +  LK + L +N+L   + +       L +L L +N++   +         L+ L 
Sbjct: 296 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLT 351

Query: 259 LYQNKLTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIP 317
           L  N    +  +++   +      D   +       E  +  +  +  +L        + 
Sbjct: 352 LSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALT 411

Query: 318 SSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKL 377
           S +  + + Q     ++  +     +        V       L  ++ E   +   L   
Sbjct: 412 SVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNE 471

Query: 378 ILFSNSLEGKIPNSLST-CKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRI 436
            +    L   +   + T  +  R  +    R S  L+  FT L       +       R 
Sbjct: 472 QIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRET--QARR 529

Query: 437 GEQKWEMTSLQMLNLAGNNFSGKLPDSFGS--DQLENLDLSENR 478
            E   +    + L         +L +      +  +   L   +
Sbjct: 530 TEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQK 573

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  161 bits (410), Expect = 1e-42
 Identities = 82/311 (26%), Positives = 134/311 (43%), Gaps = 21/311 (6%)

Query: 85  PHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGS---LSRLEILDLSN 141
                ++L  N++   +  D F+S   L  L L+ N  +  V  G+   L  L  L L +
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRS 89

Query: 142 NMLSGKIPEEIGSFSG---LKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPR 198
           N L   IP   G F+G   L  LD+  N +V  +     ++ +L+   +  N  +  I  
Sbjct: 90  NRLK-LIPL--GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISH 145

Query: 199 EI-GQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRY 256
                L +L+ + L   NL+  IP E    L  L  L L + N+      SF  L  L+ 
Sbjct: 146 RAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204

Query: 257 LFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSNNFTGK 315
           L +       ++  + L   +L S  ++   L+  +P   ++ L  L  L+L  N  +  
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTI 263

Query: 316 IPSSLASMPKLQVLQLWSNQFSGEIPSN-LGKQNNLTVIDLSTNFLTGKIPETLCDS-GS 373
             S L  + +LQ +QL   Q +  +        N L V+++S N LT  + E++  S G+
Sbjct: 264 EGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGN 321

Query: 374 LFKLILFSNSL 384
           L  LIL SN L
Sbjct: 322 LETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  160 bits (407), Expect = 3e-42
 Identities = 72/349 (20%), Positives = 120/349 (34%), Gaps = 36/349 (10%)

Query: 209 IYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSI 268
           +          +P+ I   T    LDL  N +       F +  +L  L L +N ++   
Sbjct: 16  VLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72

Query: 269 PKSILGLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSNNFTGKIPSSLASMPKLQ 327
           P +   L +L +  L  N L   IP  V   L NL  L +  N     +      +  L+
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131

Query: 328 VLQLWSNQFSGEIPSN-LGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEG 386
            L++  N     I        N+L  + L    LT  IP                     
Sbjct: 132 SLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIP--------------------- 168

Query: 387 KIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSL 446
               +LS    L  +RL++  ++      F RL  +  L+IS       +        +L
Sbjct: 169 --TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226

Query: 447 QMLNLAGNNFSGKLPDSF-GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFG 505
             L++   N +     +      L  L+LS N  S         L  L ++++   +L  
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL-A 285

Query: 506 DIPEE-LSSCKKLVSLDLSNNQLSGHIPASL-SEMPVLGQLDLSENQLS 552
            +          L  L++S NQL+  +  S+   +  L  L L  N L+
Sbjct: 286 VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  111 bits (279), Expect = 8e-26
 Identities = 44/250 (17%), Positives = 95/250 (38%), Gaps = 9/250 (3%)

Query: 339 EIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSL 398
            +P  +       ++DL  N +     +       L +L L  N +    P + +   +L
Sbjct: 25  AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 399 RRVRLQNNRLSGELSSE-FTRLPLVYFLDISGNDLSGRIGEQKWE-MTSLQMLNLAGNNF 456
           R + L++NRL   +    FT L  +  LDIS N +   + +  ++ + +L+ L +  N+ 
Sbjct: 83  RTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDL 140

Query: 457 SGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCK 515
                 +F   + LE L L +   +     +   L  L+ L++    +            
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 516 KLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHF 575
           +L  L++S+      +  +      L  L ++   L+      +  +  L  +N+S+N  
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 576 HGSLPSTGAF 585
             ++      
Sbjct: 261 S-TIEG-SML 268

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.8 bits (127), Expect = 4e-07
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 58  QNSTHVNAIELSAKNISGKISSSIFH-LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLN 116
           ++  ++  + LS   IS  I  S+ H L  ++ I L   QL+  +    F   N LR LN
Sbjct: 245 RHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLN 302

Query: 117 LSNNNFTG--PVPIGSLSRLEILDLSNNMLS 145
           +S N  T        S+  LE L L +N L+
Sbjct: 303 VSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  162 bits (412), Expect = 1e-42
 Identities = 84/479 (17%), Positives = 176/479 (36%), Gaps = 29/479 (6%)

Query: 60  STHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSN 119
           S     + +S   IS   +S I  L  +  + +S N++   +   +F  +  L +L+LS+
Sbjct: 20  SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSH 78

Query: 120 NNFTGPVPIGSLSRLEILDLSNNML-SGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISN 178
           N     +       L+ LDLS N   +  I +E G+ S LK L L    L     L I++
Sbjct: 79  NKLVK-ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 179 ITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYN 238
           +   ++  +           +   L++     L     + +    I D++     +L  +
Sbjct: 138 LNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 239 NLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQ 298
           N+          +        + + L        L   +L + + + N        +++ 
Sbjct: 196 NIK--------CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR--ILQLVW 245

Query: 299 LQNLEILHLFSNNFTGKIPSSLA-----SMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVI 353
              +    + +    G++          S+  L + Q+ S+ F           +N+ + 
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 354 DLSTNFLTGKIPETLCDS-GSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLS--G 410
           + + +     +             L   +N L   +  +      L  + LQ N+L    
Sbjct: 306 NFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364

Query: 411 ELSSEFTRLPLVYFLDISGNDLSGRIGEQKWE-MTSLQMLNLAGNNFSGKLPDSFGSDQL 469
           +++   T++  +  LDIS N +S    +       SL  LN++ N  +  +       ++
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP-RI 423

Query: 470 ENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEE-LSSCKKLVSLDLSNNQL 527
           + LDL  N+   +IP+   +L  L +L ++ N+L   +P+        L  + L  N  
Sbjct: 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  158 bits (400), Expect = 4e-41
 Identities = 97/481 (20%), Positives = 185/481 (38%), Gaps = 29/481 (6%)

Query: 114 FLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIP 173
            ++ S N     VP     +  IL++S N +S     +I S S L++L +  N +     
Sbjct: 4   LVDRSKNGLIH-VPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 174 LSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNL-SGEIPKEIGDLTSLNH 232
                   L+   L+ N+L   I        NLK + L +N   +  I KE G+++ L  
Sbjct: 63  SVFKFNQELEYLDLSHNKL-VKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119

Query: 233 LDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPK---SILGLKSLVSFDLSDNYLS 289
           L L   +L         +L+  + L +                   +SL     ++    
Sbjct: 120 LGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH 179

Query: 290 GEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNN 349
             +   V  + NLE+ ++       K    L+ + KLQ     SN             NN
Sbjct: 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL----------TLNN 229

Query: 350 LTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLS 409
           +     S   +   +  T     S+  + L           S ++ K+L   ++ ++   
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 410 GELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS-DQ 468
              S  +     +   + + +           +++    L+ + N  +  + ++ G   +
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 469 LENLDLSENRFSGTIPRS---FGRLSELMQLKISRNKLFGDIPEEL-SSCKKLVSLDLSN 524
           LE L L  N+    + +      ++  L QL IS+N +  D  +   S  K L+SL++S+
Sbjct: 350 LETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 525 NQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGA 584
           N L+  I   L   P +  LDL  N++   IP+ + ++ +L ++N++ N    S+P  G 
Sbjct: 409 NILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPD-GI 463

Query: 585 F 585
           F
Sbjct: 464 F 464

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  116 bits (291), Expect = 3e-27
 Identities = 63/399 (15%), Positives = 132/399 (33%), Gaps = 51/399 (12%)

Query: 55  ISCQNSTHVNAIELSAKNISGKISSSIF-HLPHVESINLSSNQLSGEIPSDIFSSSNSLR 113
           ISC  + ++  ++LS            F ++  ++ + LS+  L  +      +  N  +
Sbjct: 84  ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE-KSSVLPIAHLNISK 142

Query: 114 FLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEI- 172
            L +    +        L       L     + K    I   S   V +L  + +   + 
Sbjct: 143 VLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202

Query: 173 -------------------------------------PLSISNITSLQIFTLASNQLIGS 195
                                                 L +   T++  F++++ +L G 
Sbjct: 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262

Query: 196 IPREIG-----QLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGN 250
           +           L+ L    +  +             +++N  +   +            
Sbjct: 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322

Query: 251 LSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLS--GEIPEEVIQLQNLEILHLF 308
           +S   +L    N LT ++ ++   L  L +  L  N L    +I E   Q+++L+ L + 
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382

Query: 309 SNNFTGKIPSSL-ASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPET 367
            N+ +        +    L  L + SN  +  I   L     + V+DL +N +   IP+ 
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIK-SIPKQ 439

Query: 368 LCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNN 406
           +    +L +L + SN L+           SL+++ L  N
Sbjct: 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 72.6 bits (178), Expect = 3e-13
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 9/166 (5%)

Query: 56  SCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSG-EIPSDIFSSSNSLRF 114
                +    ++ S   ++  +  +  HL  +E++ L  NQL      +++ +   SL+ 
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378

Query: 115 LNLSNNNFTGPVPIG---SLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGE 171
           L++S N+ +     G       L  L++S+N+L+  I   +     +KVLDL  N +   
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-S 435

Query: 172 IPLSISNITSLQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYNNL 216
           IP  +  + +LQ   +ASNQL  S+P  I  +L +L+ I+L  N  
Sbjct: 436 IPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 7/133 (5%)

Query: 79  SSIFH-LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEIL 137
           + +   +  ++ +++S N +S +      S + SL  LN+S+N  T  +      R+++L
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL 426

Query: 138 DLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSI-SNITSLQIFTLASNQLIGSI 196
           DL +N +   IP+++     L+ L++  N L   +P  I   +TSLQ   L +N    S 
Sbjct: 427 DLHSNKIK-SIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCS- 483

Query: 197 PREIGQLRNLKWI 209
              I  L    W+
Sbjct: 484 CPRIDYLSR--WL 494

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  160 bits (405), Expect = 2e-41
 Identities = 63/337 (18%), Positives = 121/337 (35%), Gaps = 35/337 (10%)

Query: 85  PHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSN---NNFTGPVPIGSLSRLEILDLSN 141
               S N   N +S    +D FS+ +      L     N     +    +++   L L+ 
Sbjct: 10  NFSLSQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNR 68

Query: 142 NMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIG 201
             LS  +P+ +     + VL++  N L+  +P   +++  L       N+L  ++P    
Sbjct: 69  LNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASLEYLD---ACDNRLS-TLPELPA 120

Query: 202 QLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQ 261
            L++L    +  N L+  +P+       L +++   N LT  +P      ++L  L +  
Sbjct: 121 SLKHL---DVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPEL---PTSLEVLSVRN 169

Query: 262 NKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLE----ILHLFSNNFTGKIP 317
           N+LT  +P+    L++L   D+S N L   +P   ++  + E          N  T  IP
Sbjct: 170 NQLT-FLPELPESLEAL---DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIP 223

Query: 318 SSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKL 377
            ++ S+     + L  N  S  I  +L +Q           + +    +       L   
Sbjct: 224 ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADA 283

Query: 378 ILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSS 414
           +           + +S            N  S  L  
Sbjct: 284 VT--AWFPENKQSDVSQIWHAFEHEEHANTFSAFLDR 318

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  132 bits (333), Expect = 3e-32
 Identities = 67/313 (21%), Positives = 120/313 (38%), Gaps = 50/313 (15%)

Query: 267 SIPKSILGLKSLVSFDLSDNYLSG---EIPEEVIQLQNLEILHLFSNNFTGKIPSSLASM 323
           SI   I    SL S +   N +SG   +      + +   +     N     +   L  +
Sbjct: 2   SIMLPINNNFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--I 58

Query: 324 PKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNS 383
            +   LQL     S  +P NL     +TV++++ N L   +PE      SL  L    N 
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELP---ASLEYLDACDNR 111

Query: 384 LEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEM 443
           L   +P   ++ K L    + NN+L+  L      L    +++   N L+  + E     
Sbjct: 112 LS-TLPELPASLKHLD---VDNNQLT-MLPELPALL---EYINADNNQLT-MLPEL---P 159

Query: 444 TSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKL 503
           TSL++L++  N  +  LP+   S  LE LD+S N    ++P    R     +        
Sbjct: 160 TSLEVLSVRNNQLT-FLPELPES--LEALDVSTNLLE-SLPAVPVRNHHSEET------- 208

Query: 504 FGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVA 563
                         +      N+++ HIP ++  +     + L +N LS +I ++L +  
Sbjct: 209 -------------EIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

Query: 564 SLVQVNISHNHFH 576
           +    +    +F 
Sbjct: 255 AQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  126 bits (318), Expect = 2e-30
 Identities = 55/305 (18%), Positives = 110/305 (36%), Gaps = 40/305 (13%)

Query: 61  THVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNN 120
              + ++L+  N+S  +  ++   P +  + ++ N L   +P        SL +L+  +N
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELP----ASLEYLDACDN 110

Query: 121 NFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNIT 180
             +  +P    + L+ LD+ NN L+  +PE       L+ ++   N L   +P      T
Sbjct: 111 RLST-LP-ELPASLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLP---ELPT 160

Query: 181 SLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSL----NHLDLV 236
           SL++ ++ +NQL   +P     L  L    +  N L   +P                   
Sbjct: 161 SLEVLSVRNNQL-TFLPELPESLEAL---DVSTNLLE-SLPAVPVRNHHSEETEIFFRCR 215

Query: 237 YNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEV 296
            N +T  IP +  +L     + L  N L+  I +S+    +   +     Y S    +  
Sbjct: 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ-- 272

Query: 297 IQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLS 356
                    +         + +      +  V Q+W + F  E  +N      L  +  +
Sbjct: 273 --------QNTLHRPLADAVTAWFPENKQSDVSQIW-HAFEHEEHAN-TFSAFLDRLSDT 322

Query: 357 TNFLT 361
            +   
Sbjct: 323 VSARN 327

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  121 bits (304), Expect = 1e-28
 Identities = 64/364 (17%), Positives = 114/364 (31%), Gaps = 62/364 (17%)

Query: 220 IPKEIGDLTSLNHLDLVYNNLTGQ---IPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLK 276
           I   I +  SL+  +  YN ++G       ++            +N+    + + ++   
Sbjct: 3   IMLPINNNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLI--N 59

Query: 277 SLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQF 336
                 L+   LS  +P+ +     + +L +  N     +P   AS   L+ L    N+ 
Sbjct: 60  QFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPAS---LEYLDACDNRL 112

Query: 337 SGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCK 396
           S  +P       +L  +D+  N LT  +PE       L  +   +N L   +P   +   
Sbjct: 113 S-TLPELPA---SLKHLDVDNNQLT-MLPELP---ALLEYINADNNQLT-MLPELPT--- 160

Query: 397 SLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNF 456
           SL  + ++NN+L        T LP                        SL+ L+++ N  
Sbjct: 161 SLEVLSVRNNQL--------TFLPE--------------------LPESLEALDVSTNLL 192

Query: 457 SGKLPDSFGS-----DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEEL 511
              LP          +        ENR +  IP +   L     + +  N L   I E L
Sbjct: 193 ES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250

Query: 512 SSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNIS 571
           S               S       +    L   D             + ++    +    
Sbjct: 251 SQQTAQPDYHGPRIYFSMSDGQQNTLHRPLA--DAVTAWFPENKQSDVSQIWHAFEHEEH 308

Query: 572 HNHF 575
            N F
Sbjct: 309 ANTF 312

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  103 bits (257), Expect = 7e-23
 Identities = 55/306 (17%), Positives = 103/306 (33%), Gaps = 25/306 (8%)

Query: 83  HLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNN 142
               ++ +++ +NQL+  +P         L ++N  NN  T  +P    + LE+L + NN
Sbjct: 118 LPASLKHLDVDNNQLT-MLPELP----ALLEYINADNNQLTM-LP-ELPTSLEVLSVRNN 170

Query: 143 MLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQ----IFTLASNQLIGSIPR 198
            L+  +PE   S   L+ LD+  N+L   +P         +     F    N+ I  IP 
Sbjct: 171 QLT-FLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENR-ITHIPE 224

Query: 199 EIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLF 258
            I  L     I L  N LS  I + +   T+    D     +   +     N  +     
Sbjct: 225 NILSLDPTCTIILEDNPLSSRIRESLSQQTAQ--PDYHGPRIYFSMSDGQQNTLHRPLAD 282

Query: 259 LYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPS 318
                   +    +  +      +   N  S    + +    +      F       + +
Sbjct: 283 AVTAWFPENKQSDVSQIWHAFEHEEHANTFS-AFLDRLSDTVSARNTSGFREQ----VAA 337

Query: 319 SLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLI 378
            L  +     L+  S   + +   +   +  LT  +L    L  +  E L D+     L+
Sbjct: 338 WLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDN-DTGALL 396

Query: 379 LFSNSL 384
                +
Sbjct: 397 SLGREM 402

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  151 bits (383), Expect = 2e-40
 Identities = 67/261 (25%), Positives = 126/261 (48%), Gaps = 38/261 (14%)

Query: 706 ANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG 765
             ++QF      +V  I+             + +H N++RL G C +     LVY Y+  
Sbjct: 69  GGELQFQT----EVEMIS-------------MAVHRNLLRLRGFCMTPTERLLVYPYMAN 111

Query: 766 KELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD 818
             ++  LR        L W +R+++A+G A+ L +LH HC P ++  DV    +++D + 
Sbjct: 112 GSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEF 171

Query: 819 EPHLRLSVPGLAYCTDSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDLL 871
           E    +   GLA   D K  + +        ++APE   +   +EK D++G+G++L++L+
Sbjct: 172 EAV--VGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELI 229

Query: 872 TGKSPADADFGVHES---IVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALH 928
           TG+   D     ++    +++W +    +  L+  VD  ++G+      E+ +++ +AL 
Sbjct: 230 TGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYK--DEEVEQLIQVALL 287

Query: 929 CTAGDPTARPCASDVTKTLES 949
           CT   P  RP  S+V + LE 
Sbjct: 288 CTQSSPMERPKMSEVVRMLEG 308

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  150 bits (380), Expect = 5e-40
 Identities = 66/292 (22%), Positives = 122/292 (41%), Gaps = 29/292 (9%)

Query: 60  STHVNAIELSAKNISGKISSSIF-HLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLS 118
           S     ++L   +IS ++    F  L H+ ++ L +N++S +I    FS    L+ L +S
Sbjct: 53  SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYIS 110

Query: 119 NNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSG---LKVLDLGGNVL-VGEIPL 174
            N+    +P    S L  L + +N +  K+P+  G FSG   +  +++GGN L       
Sbjct: 111 KNHLVE-IPPNLPSSLVELRIHDNRIR-KVPK--GVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 175 SISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHL 233
              +   L    ++  +L   IP+++     L  ++L +N +   I  E     + L  L
Sbjct: 167 GAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRL 222

Query: 234 DLVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEI 292
            L +N +   I   S   L  LR L L  NKL+  +P  +  LK L    L  N ++ ++
Sbjct: 223 GLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KV 279

Query: 293 PEEV-------IQLQNLEILHLFSNNFTGKI--PSSLASMPKLQVLQLWSNQ 335
                      ++      + LF+N        P++   +     +Q  + +
Sbjct: 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  142 bits (361), Expect = 1e-37
 Identities = 63/292 (21%), Positives = 109/292 (37%), Gaps = 33/292 (11%)

Query: 85  PHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIG---SLSRLEILDLSN 141
           P    ++L +N +S E+  D F     L  L L NN  +  +       L +L+ L +S 
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISK 111

Query: 142 NMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQL-IGSIPREI 200
           N L  +IP      S L  L +  N +        S + ++    +  N L         
Sbjct: 112 NHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

Query: 201 GQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP-SFGNLSNLRYLFL 259
                L ++ +    L+  IPK++    +LN L L +N +   I        S L  L L
Sbjct: 169 FDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGL 224

Query: 260 YQNKLTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPS 318
             N++   I    L  L +L    L +N LS  +P  +  L+ L++++L +NN T K+  
Sbjct: 225 GHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGV 281

Query: 319 S-------LASMPKLQVLQLWSNQFS-GEIP----SNLGKQNNLTVIDLSTN 358
           +                + L++N     E+       +    +   I     
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV---TDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  138 bits (350), Expect = 5e-36
 Identities = 76/314 (24%), Positives = 127/314 (40%), Gaps = 29/314 (9%)

Query: 109 SNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSG---LKVLDLGG 165
              LR +  S+      VP        +LDL NN +S ++ +    F G   L  L L  
Sbjct: 32  HCHLRVVQCSDLGLKA-VPKEISPDTTLLDLQNNDIS-ELRK--DDFKGLQHLYALVLVN 87

Query: 166 NVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEI- 224
           N +      + S +  LQ   ++ N L+  IP       +L  + +  N +  ++PK + 
Sbjct: 88  NKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIR-KVPKGVF 143

Query: 225 GDLTSLNHLDLVYNNLT-GQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFD 282
             L ++N +++  N L      P +F  L  L YL + + KLT  IPK +   ++L    
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL--PETLNELH 199

Query: 283 LSDNYLSGEIPEEVIQ-LQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIP 341
           L  N +   I  E +     L  L L  N        SL+ +P L+ L L +N+ S  +P
Sbjct: 200 LDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 342 SNLGKQNNLTVIDLSTNFLTGKIPETLCDSG------SLFKLILFSNSLE-GKIPNSLST 394
           + L     L V+ L TN +T       C  G          + LF+N +   ++  +   
Sbjct: 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317

Query: 395 C-KSLRRVRLQNNR 407
           C      ++  N +
Sbjct: 318 CVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  135 bits (342), Expect = 5e-35
 Identities = 62/335 (18%), Positives = 122/335 (36%), Gaps = 50/335 (14%)

Query: 205 NLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNK 263
           +L+ +      L   +PKEI        LDL  N+++ ++    F  L +L  L L  NK
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNK 89

Query: 264 LTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASM 323
           ++    K+   L+ L    +S N+L  EIP  +    +L  L +  N          + +
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGL 146

Query: 324 PKLQVLQLWSNQF-SGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSN 382
             +  +++  N   +            L  + +S   LT  IP+ L +  +L +L L  N
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPE--TLNELHLDHN 203

Query: 383 SLEGKIP-NSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKW 441
            ++  I    L     L R+ L +N++                  I    LS        
Sbjct: 204 KIQ-AIELEDLLRYSKLYRLGLGHNQIR----------------MIENGSLSF------- 239

Query: 442 EMTSLQMLNLAGNNFSGKLPDSF-GSDQLENLDLSENRFSGTIP-------RSFGRLSEL 493
            + +L+ L+L  N  S ++P        L+ + L  N  +  +            + +  
Sbjct: 240 -LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYY 296

Query: 494 MQLKISRNKL-FGDIPEELSSC-KKLVSLDLSNNQ 526
             + +  N + + ++      C    +++   N +
Sbjct: 297 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (255), Expect = 1e-23
 Identities = 70/304 (23%), Positives = 115/304 (37%), Gaps = 66/304 (21%)

Query: 277 SLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQF 336
            L     SD  L   +P+E+    +  +L L +N+ +         +  L  L L +N+ 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 337 SGEIPSN-LGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTC 395
           S +I          L  + +S N L                          +IP +L   
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLV-------------------------EIPPNLP-- 122

Query: 396 KSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNN 455
            SL  +R+ +NR+                  +     SG        + ++  + + GN 
Sbjct: 123 SSLVELRIHDNRIR----------------KVPKGVFSG--------LRNMNCIEMGGNP 158

Query: 456 --FSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEE-LS 512
              SG  P +F   +L  L +SE + +  IP+       L +L +  NK+   I  E L 
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKI-QAIELEDLL 214

Query: 513 SCKKLVSLDLSNNQLSGHIPA-SLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNIS 571
              KL  L L +NQ+   I   SLS +P L +L L  N+LS ++P  L  +  L  V + 
Sbjct: 215 RYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272

Query: 572 HNHF 575
            N+ 
Sbjct: 273 TNNI 276

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  152 bits (385), Expect = 2e-39
 Identities = 80/457 (17%), Positives = 146/457 (31%), Gaps = 65/457 (14%)

Query: 72  NISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSL 131
            +    + S   L  + S++  ++ ++ ++          L  L  ++NN T  + +   
Sbjct: 29  EMQATDTISEEQLATLTSLDCHNSSIT-DMTG--IEKLTGLTKLICTSNNITT-LDLSQN 84

Query: 132 SRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQ 191
           + L  L   +N L+  +   +   + L  L+   N L     L +S    L     A N 
Sbjct: 85  TNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKL---TKLDVSQNPLLTYLNCARNT 138

Query: 192 LIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNL 251
           L   I   +     L  +    N    ++   +   T L  LD  +N +T ++       
Sbjct: 139 LT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT-ELD--VSQN 190

Query: 252 SNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNN 311
             L  L    N +T  +   +     L   D S N L+ EI   V  L  L       N 
Sbjct: 191 KLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNP 244

Query: 312 FTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDS 371
            T ++  S  ++ KL  L         EI   L     L            ++   +  +
Sbjct: 245 LT-ELDVS--TLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD--VTHN 296

Query: 372 GSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGND 431
             L+ L   +  +  ++   LS    L  + L N  L+               LD+S N 
Sbjct: 297 TQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTE--------------LDVSHN- 338

Query: 432 LSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLS 491
                       T L+ L+    +             L N   +E +   T+P+     +
Sbjct: 339 ------------TKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEGQTI-TMPKETLTNN 384

Query: 492 ELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLS 528
            L  + +S + L                 D + N ++
Sbjct: 385 SL-TIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTIT 420

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  139 bits (352), Expect = 3e-35
 Identities = 81/402 (20%), Positives = 138/402 (34%), Gaps = 40/402 (9%)

Query: 158 LKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLS 217
                     +     +S   + +L      ++  I  +   I +L  L  +    NN++
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSS-ITDMT-GIEKLTGLTKLICTSNNIT 77

Query: 218 GEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKS 277
             +   +   T+L +L    N LT  +      L+ L YL    NKLT  +  S      
Sbjct: 78  -TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLDVS--QNPL 128

Query: 278 LVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS 337
           L   + + N L+ EI   V     L  L    N    K+   +    +L  L    N+ +
Sbjct: 129 LTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183

Query: 338 GEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKS 397
               S       L  ++  TN +T K+   L  +  L  L   SN L  +I   ++    
Sbjct: 184 ELDVSQN---KLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQ 234

Query: 398 LRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFS 457
           L       N L+    S  ++L     L     DL           T L      G    
Sbjct: 235 LTYFDCSVNPLTELDVSTLSKLT---TLHCIQTDLLEIDLTH---NTQLIYFQAEGCRKI 288

Query: 458 GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKL 517
            +L  +  + QL  LD      +  +     +  +L+ L ++  +L  ++   +S   KL
Sbjct: 289 KELDVT-HNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTEL-TELD--VSHNTKL 341

Query: 518 VSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTL 559
            SL   N  +      S+ ++P L     +E Q      +TL
Sbjct: 342 KSLSCVNAHIQD-FS-SVGKIPALNNNFEAEGQTITMPKETL 381

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  115 bits (291), Expect = 2e-27
 Identities = 52/305 (17%), Positives = 101/305 (33%), Gaps = 31/305 (10%)

Query: 67  ELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPV 126
           EL            +     + +++ S N+++ E+     S +  L  LN   NN T  +
Sbjct: 152 ELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT-ELD---VSQNKLLNRLNCDTNNITK-L 206

Query: 127 PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFT 186
            +    +L  LD S+N L+ +I   +   + L   D   N L     L +S ++ L    
Sbjct: 207 DLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPL---TELDVSTLSKLTTLH 260

Query: 187 LASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP 246
                L+  I   +     L +          E+  ++   T L  LD     +T ++  
Sbjct: 261 CIQTDLL-EID--LTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT-ELD- 313

Query: 247 SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILH 306
                  L YL+L   +LT  +   +     L S    + ++  +    V ++  L    
Sbjct: 314 -LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNF 367

Query: 307 LFSNNFTGKIPSSLAS-----MPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLT 361
                       +L +          +L  + N  +  I    G   +     ++   L+
Sbjct: 368 EAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN--IEPGDGGVYDQATNTITWENLS 425

Query: 362 GKIPE 366
              P 
Sbjct: 426 TDNPA 430

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  102 bits (255), Expect = 8e-23
 Identities = 71/344 (20%), Positives = 127/344 (36%), Gaps = 51/344 (14%)

Query: 252 SNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNN 311
            N         ++  +   S   L +L S D  ++ ++ ++   + +L  L  L   SNN
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNN 75

Query: 312 FTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDS 371
            T  +   L+    L  L   SN+ +  +   +     LT ++  TN LT K+  +    
Sbjct: 76  IT-TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLDVSQNP- 127

Query: 372 GSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGND 431
             L  L    N+L  +I   +S    L  +    N+   +L  + T    +  LD S N 
Sbjct: 128 -LLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181

Query: 432 LSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLS 491
           ++     Q      L  LN   NN + KL  +  + QL  LD S N+ +  I      L+
Sbjct: 182 ITELDVSQ---NKLLNRLNCDTNNIT-KLDLN-QNIQLTFLDCSSNKLT-EID--VTPLT 233

Query: 492 ELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPAS----------------- 534
           +L     S N L  ++   +S+  KL +L      L   I  +                 
Sbjct: 234 QLTYFDCSVNPL-TELD--VSTLSKLTTLHCIQTDLL-EIDLTHNTQLIYFQAEGCRKIK 289

Query: 535 ---LSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHF 575
              ++    L  LD     ++ ++   L +   LV + +++   
Sbjct: 290 ELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 92.4 bits (230), Expect = 8e-20
 Identities = 53/282 (18%), Positives = 102/282 (36%), Gaps = 27/282 (9%)

Query: 294 EEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVI 353
            +     N       +         S   +  L  L   ++  +    + + K   LT +
Sbjct: 12  NDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKL 69

Query: 354 DLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELS 413
             ++N +T  +   L  + +L  L   SN L   +   ++    L  +    N+L+    
Sbjct: 70  ICTSNNIT-TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT---K 120

Query: 414 SEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLD 473
            + ++ PL+ +L+ + N L+          T L  L+   N       D     QL  LD
Sbjct: 121 LDVSQNPLLTYLNCARNTLTEIDVSH---NTQLTELDCHLNKKI-TKLDVTPQTQLTTLD 176

Query: 474 LSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPA 533
            S N+ +  +     +   L +L    N +   +   L+   +L  LD S+N+L+  I  
Sbjct: 177 CSFNKIT-ELD--VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID- 228

Query: 534 SLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHF 575
            ++ +  L   D S N L+     TL   + L  ++      
Sbjct: 229 -VTPLTQLTYFDCSVNPLTELDVSTL---SKLTTLHCIQTDL 266

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.7 bits (145), Expect = 3e-09
 Identities = 25/193 (12%), Positives = 58/193 (30%), Gaps = 28/193 (14%)

Query: 66  IELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGP 125
           I   A+         + H   +  ++  +  ++ E+     S +  L +L L+N   T  
Sbjct: 278 IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD---LSQNPKLVYLYLNNTELTE- 332

Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIF 185
           + +   ++L+ L   N  +       +G    L                      ++   
Sbjct: 333 LDVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEG-----------QTITMPKE 379

Query: 186 TLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIP 245
           TL +N L  ++            +    N ++  I    G +       + + NL+   P
Sbjct: 380 TLTNNSLTIAVS--------PDLLDQFGNPMN--IEPGDGGVYDQATNTITWENLSTDNP 429

Query: 246 PSFGNLSNLRYLF 258
                 ++     
Sbjct: 430 AVTYTFTSENGAI 442

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 8/115 (6%)

Query: 460 LPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVS 519
             D F  D   +   +      T   S  +L+ L  L    + +  D+   +     L  
Sbjct: 11  FNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI-TDMT-GIEKLTGLTK 68

Query: 520 LDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNH 574
           L  ++N ++  +   LS+   L  L    N+L+  +   +  +  L  +N   N 
Sbjct: 69  LICTSNNIT-TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNK 117

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  153 bits (389), Expect = 2e-39
 Identities = 87/489 (17%), Positives = 176/489 (35%), Gaps = 57/489 (11%)

Query: 61  THVNAIELSAKNISGKISSSIFH-LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSN 119
               A+ LS  +IS ++       L  +  + LS N++   +   +F  +  L +L++S+
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSH 109

Query: 120 NNFTGPVPIGSLSRLEILDLSNNML-SGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISN 178
           N     +    ++ L  LDLS N      + +E G+ + L  L L          L +  
Sbjct: 110 NRLQN-ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLP 165

Query: 179 ITSLQIFTLASNQLIGSIPR---EIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDL 235
           +  L +  +  + +   I     E  Q+ N   ++L ++  S    +    + +L HL L
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 236 VYNNLTGQIPPSFGNL-------SNLRYLFLYQNKLTGSIPKSILGL---KSLVSFDLSD 285
               L  +                 L  + L   + T      +      + +   ++ +
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 286 NYLSGEIPEEVIQ-----LQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEI 340
             ++  I  E        L++L I H+ +  F     +  +   ++ +  L  +      
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 341 PSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRR 400
                  ++ T ++ + N  T       C +                        K L+ 
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFT-DSVFQGCST-----------------------LKRLQT 381

Query: 401 VRLQNNRLS--GELSSEFTRLPLVYFLDISGNDL-SGRIGEQKWEMTSLQMLNLAGNNFS 457
           + LQ N L    +++     +  +  LD+S N L S           S+ +LNL+ N  +
Sbjct: 382 LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

Query: 458 GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEE-LSSCKK 516
           G +       +++ LDL  NR   +IP+    L  L +L ++ N+L   +P+        
Sbjct: 442 GSVFRCL-PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTS 498

Query: 517 LVSLDLSNN 525
           L  + L +N
Sbjct: 499 LQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  151 bits (384), Expect = 9e-39
 Identities = 103/503 (20%), Positives = 191/503 (37%), Gaps = 61/503 (12%)

Query: 107 SSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGN 166
            S+     ++ SN N T  VP     R + L LS N +S ++       S L        
Sbjct: 28  FSNELESMVDYSNRNLTH-VPKDLPPRTKALSLSQNSIS-ELRM--PDISFL-------- 75

Query: 167 VLVGEIPLSISNITSLQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEIG 225
                        + L++  L+ N++  S+   +    ++L+++ + +N L   I     
Sbjct: 76  -------------SELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHNRLQ-NIS--CC 118

Query: 226 DLTSLNHLDLVYNNLTGQIPPS--FGNLSNLRYLFLYQNKLTGSIPKSILGLK-SLVSFD 282
            + SL HLDL +N+    +P    FGNL+ L +L L   K        +  L  S +  D
Sbjct: 119 PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177

Query: 283 LSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGE-IP 341
           L   ++      E +Q+ N  +LHL  +  +        S+  L  LQL + + + E   
Sbjct: 178 LVSYHIK-GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236

Query: 342 SNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLI---------LFSNSLEGKIP--- 389
             +   + LT      N     I  T   S  LF+           +++ ++  +I    
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296

Query: 390 --NSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQ 447
              S +  KSL    ++N        + ++    +    +S +D            +S  
Sbjct: 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356

Query: 448 MLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKL--- 503
            LN   N F+  +     +  +L+ L L  N       +       +  L+     L   
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSL 415

Query: 504 -FGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRV 562
                    +  + ++ L+LS+N L+G +   L   P +  LDL  N++   IP+ +  +
Sbjct: 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHL 472

Query: 563 ASLVQVNISHNHFHGSLPSTGAF 585
            +L ++N++ N    S+P  G F
Sbjct: 473 QALQELNVASNQLK-SVPD-GVF 493

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  111 bits (280), Expect = 1e-25
 Identities = 62/345 (17%), Positives = 124/345 (35%), Gaps = 25/345 (7%)

Query: 58  QNSTHVNAIELSAKNISGKISSSIFHLPHVE-SINLSSNQLSGEIPSDIFSSSNSLRFLN 116
                   ++L + +I G  + S+         +    N L     +   ++   L+  N
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227

Query: 117 LSNNNF------TGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSF---SGLKVLDLGGNV 167
           +  N+       T    +     L  + L +   + K   ++  F     ++ L++    
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 168 LVGEIPLSI-----SNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPK 222
           +   I         + + SL I  + +   + S          +    L  ++       
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 223 EIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFD 282
                +S   L+   N  T  +      L  L+ L L +N L  +  K  L  K++ S +
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLE 406

Query: 283 LSDNYL----SGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSG 338
             D  L    S          +++ +L+L SN  TG +   L   PK++VL L +N+   
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM- 463

Query: 339 EIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDS-GSLFKLILFSN 382
            IP ++     L  +++++N L   +P+ + D   SL  + L  N
Sbjct: 464 SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  105 bits (263), Expect = 1e-23
 Identities = 63/324 (19%), Positives = 118/324 (36%), Gaps = 33/324 (10%)

Query: 3   NNSILFMFLFLSFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTH 62
            NS+  + + +S       +L              N   N ++      +     +  T 
Sbjct: 205 PNSLFSVQVNMSVNALGHLQL-------------SNIKLNDENCQRLMTFLSELTRGPTL 251

Query: 63  VNAIELSAKNISGKISSSIFHL---PHVESINLSSNQLSGEIPSDIFSSSN----SLRFL 115
           +N + L     + K S  +F       VE +N+ +  ++  I  + F+ S     SL   
Sbjct: 252 LN-VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310

Query: 116 NLSNNNFTGPVPIG--SLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIP 173
           ++ N  F           + + I  LS +           S S    L+   NV    + 
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370

Query: 174 LSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNL----SGEIPKEIGDLTS 229
              S +  LQ   L  N L  +  +     +N+  +     +L    S    +      S
Sbjct: 371 QGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429

Query: 230 LNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLS 289
           +  L+L  N LTG +         ++ L L+ N++  SIPK +  L++L   +++ N L 
Sbjct: 430 ILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486

Query: 290 GEIPEEVIQ-LQNLEILHLFSNNF 312
             +P+ V   L +L+ + L  N +
Sbjct: 487 -SVPDGVFDRLTSLQYIWLHDNPW 509

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  147 bits (374), Expect = 3e-39
 Identities = 79/338 (23%), Positives = 130/338 (38%), Gaps = 74/338 (21%)

Query: 85  PHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGS---LSRLEILDLSN 141
           P    ++L +N+++ EI    F +  +L  L L NN  +  +  G+   L +LE L LS 
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSK 109

Query: 142 NMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIG 201
           N L  ++PE       L+ L +  N            IT ++                  
Sbjct: 110 NQLK-ELPE--KMPKTLQELRVHEN-----------EITKVRKSVFN------------- 142

Query: 202 QLRNLKWIYLGYNNL-SGEIPKEI-GDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFL 259
            L  +  + LG N L S  I       +  L+++ +   N+T  IP   G   +L  L L
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHL 199

Query: 260 YQNKLTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSNNFTGKIP 317
             NK+T  +  + L GL +L    LS N +S  +    +    +L  LHL +N    K+P
Sbjct: 200 DGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVP 256

Query: 318 SSLASMPKLQVLQLWSNQFSGEIPSN-------LGKQNNLTVIDLSTNFLT-GKIPETLC 369
             LA    +QV+ L +N  S  I SN         K+ + + + L +N +   +I     
Sbjct: 257 GGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ---- 311

Query: 370 DSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNR 407
                              P++         V+L N +
Sbjct: 312 -------------------PSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  138 bits (350), Expect = 4e-36
 Identities = 82/352 (23%), Positives = 136/352 (38%), Gaps = 61/352 (17%)

Query: 134 LEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLI 193
           L ++  S+  L  K+P+++       +LDL  N            IT ++          
Sbjct: 33  LRVVQCSDLGLE-KVPKDL--PPDTALLDLQNN-----------KITEIK---------- 68

Query: 194 GSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSN 253
                +   L+NL  + L  N +S   P     L  L  L L  N L  ++P        
Sbjct: 69  ---DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKT 122

Query: 254 LRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYL-SGEIPEEVIQ-LQNLEILHLFSN 310
           L+ L +++N++T  + KS+  GL  ++  +L  N L S  I     Q ++ L  + +   
Sbjct: 123 LQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 311 NFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSN-LGKQNNLTVIDLSTNFLTGKIPETLC 369
           N T  IP  L   P L  L L  N+ + ++ +  L   NNL  + LS N ++     +L 
Sbjct: 182 NIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

Query: 370 DSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISG 429
           ++  L +L L +N L  K+P  L+  K ++ V L NN +S                 I  
Sbjct: 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS----------------AIGS 280

Query: 430 NDLSGRIGEQKWEMTSLQMLNLAGNNFSGKL--PDSF-GSDQLENLDLSENR 478
           ND        K    S   ++L  N        P +F        + L   +
Sbjct: 281 NDFCPPGYNTK--KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  137 bits (346), Expect = 1e-35
 Identities = 72/312 (23%), Positives = 127/312 (40%), Gaps = 27/312 (8%)

Query: 205 NLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNK 263
           +L+ +      L  ++PK++        LDL  N +T +I    F NL NL  L L  NK
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK 87

Query: 264 LTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPS-SLAS 322
           ++   P +   L  L    LS N L  E+PE++   + L+ L +  N  T K+       
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNG 143

Query: 323 MPKLQVLQLWSNQF-SGEIPSN-LGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILF 380
           + ++ V++L +N   S  I +        L+ I ++   +T  IP+ L    SL +L L 
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLD 200

Query: 381 SNSLEGKIP-NSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQ 439
            N +  K+   SL    +L ++ L  N +S   +      P +  L ++ N L  ++   
Sbjct: 201 GNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258

Query: 440 KWEMTSLQMLNLAGNNFSGKLPDSFGSD-------QLENLDLSENRFSGTI--PRSFGRL 490
             +   +Q++ L  NN S    + F              + L  N        P +F  +
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

Query: 491 SELMQLKISRNK 502
                +++   K
Sbjct: 319 YVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  123 bits (311), Expect = 6e-31
 Identities = 49/210 (23%), Positives = 86/210 (40%), Gaps = 21/210 (10%)

Query: 68  LSAKNISGKISSSIF-HLPHVESINLSSNQL-SGEIPSDIFSSSNSLRFLNLSNNNFTGP 125
           +    I+ K+  S+F  L  +  + L +N L S  I +  F     L ++ +++ N T  
Sbjct: 128 VHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185

Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSG---LKVLDLGGNVLVGEIPLSISNITSL 182
           +P G    L  L L  N ++ K+     S  G   L  L L  N +      S++N   L
Sbjct: 186 IPQGLPPSLTELHLDGNKIT-KVDA--ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242

Query: 183 QIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKE-------IGDLTSLNHLDL 235
           +   L +N+L+  +P  +   + ++ +YL  NN+S  I               S + + L
Sbjct: 243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSL 300

Query: 236 VYNNLT-GQIPPS-FGNLSNLRYLFLYQNK 263
             N +   +I PS F  +     + L   K
Sbjct: 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  101 bits (253), Expect = 3e-23
 Identities = 59/303 (19%), Positives = 113/303 (37%), Gaps = 63/303 (20%)

Query: 277 SLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQF 336
            L     SD  L  ++P+++    +  +L L +N  T        ++  L  L L +N+ 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK- 87

Query: 337 SGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCK 396
                        ++ I           P        L +L L  N L+ ++P  +   K
Sbjct: 88  -------------ISKIS----------PGAFAPLVKLERLYLSKNQLK-ELPEKMP--K 121

Query: 397 SLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNF 456
           +L+ +R+  N ++                 +  +  +G        +  + ++ L  N  
Sbjct: 122 TLQELRVHENEIT----------------KVRKSVFNG--------LNQMIVVELGTNPL 157

Query: 457 SGKL--PDSF-GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEE-LS 512
                   +F G  +L  + +++   + TIP+  G    L +L +  NK+   +    L 
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKI-TKVDAASLK 213

Query: 513 SCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISH 572
               L  L LS N +S     SL+  P L +L L+ N+L  K+P  L     +  V + +
Sbjct: 214 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272

Query: 573 NHF 575
           N+ 
Sbjct: 273 NNI 275

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  145 bits (367), Expect = 2e-37
 Identities = 68/261 (26%), Positives = 103/261 (39%), Gaps = 21/261 (8%)

Query: 85  PHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFT--GPVPIGSLSRLEILDLSNN 142
                +  +   LS E+P  I S+    R+LNL  NN           L  LE+L L  N
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIPSN---TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 143 MLSGKIPEEIGSFSG---LKVLDLGGNVLVGEIPLSI-SNITSLQIFTLASNQLIGSIPR 198
            +  +I    G+F+G   L  L+L  N L   IP      ++ L+   L +N  I SIP 
Sbjct: 110 SIR-QIEV--GAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNP-IESIPS 164

Query: 199 EI-GQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRY 256
               ++ +L  + LG       I +     L +L +L+L   N+     P+   L  L  
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEE 222

Query: 257 LFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSNNFTGK 315
           L +  N      P S  GL SL    + ++ +S  I       L +L  L+L  NN +  
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSL 281

Query: 316 IPSSLASMPKLQVLQLWSNQF 336
                  +  L  L L  N +
Sbjct: 282 PHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  139 bits (351), Expect = 3e-35
 Identities = 71/266 (26%), Positives = 124/266 (46%), Gaps = 23/266 (8%)

Query: 57  CQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLN 116
           C  S   + +  + + +S ++   I    +   +NL  N +   I +D F   + L  L 
Sbjct: 50  CSCSNQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQ 105

Query: 117 LSNNNFTGPVPIGS---LSRLEILDLSNNMLSGKIPEEIGSFSG---LKVLDLGGNVLVG 170
           L  N+    + +G+   L+ L  L+L +N L+  IP   G+F     L+ L L  N +  
Sbjct: 106 LGRNSIRQ-IEVGAFNGLASLNTLELFDNWLT-VIPS--GAFEYLSKLRELWLRNNPIE- 160

Query: 171 EIPLSI-SNITSLQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEIGDLT 228
            IP    + + SL    L   + +  I       L NLK++ LG  N+  ++P  +  L 
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLV 218

Query: 229 SLNHLDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNY 287
            L  L++  N+   +I P SF  LS+L+ L++  ++++     +  GL SLV  +L+ N 
Sbjct: 219 GLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277

Query: 288 LSGEIPEEVIQ-LQNLEILHLFSNNF 312
           LS  +P ++   L+ L  LHL  N +
Sbjct: 278 LS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  125 bits (316), Expect = 1e-30
 Identities = 63/260 (24%), Positives = 108/260 (41%), Gaps = 18/260 (6%)

Query: 132 SRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQ 191
           ++   +  +   LS ++P+ I   S  + L+L  N +      +  ++  L++  L  N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 192 LIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLTGQIPP-SF 248
            I  I       L +L  + L  N L+  IP      L+ L  L L  N +   IP  +F
Sbjct: 111 -IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAF 167

Query: 249 GNLSNLRYLFLYQ-NKLTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILH 306
             + +L  L L +  KL   I +    GL +L   +L    +  ++P  +  L  LE L 
Sbjct: 168 NRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELE 224

Query: 307 LFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSN-LGKQNNLTVIDLSTNFLTGKIP 365
           +  N+F    P S   +  L+ L + ++Q S  I  N      +L  ++L+ N L+  +P
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLP 282

Query: 366 ETLCDS-GSLFKLILFSNSL 384
             L      L +L L  N  
Sbjct: 283 HDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  109 bits (274), Expect = 3e-25
 Identities = 54/257 (21%), Positives = 100/257 (38%), Gaps = 11/257 (4%)

Query: 324 PKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNS 383
            +   +       S E+P  +   +N   ++L  N +     +T      L  L L  NS
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 384 LEGKIPNSLSTCKSLRRVRLQNNRLSGELSSE-FTRLPLVYFLDISGNDLSGRIGEQKWE 442
           +      + +   SL  + L +N L+  + S  F  L  +  L +  N +   I    + 
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFN 168

Query: 443 -MTSLQMLNLAGNNFSGKLP-DSF-GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKIS 499
            + SL  L+L        +   +F G   L+ L+L        +P +   L  L +L++S
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMS 226

Query: 500 RNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTL 559
            N      P        L  L + N+Q+S     +   +  L +L+L+ N LS       
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286

Query: 560 GRVASLVQVNISHNHFH 576
             +  LV++++ HN ++
Sbjct: 287 TPLRYLVELHLHHNPWN 303

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  144 bits (365), Expect = 6e-37
 Identities = 84/392 (21%), Positives = 144/392 (36%), Gaps = 42/392 (10%)

Query: 169 VGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGD-L 227
           V E+P   +++  +    L+ N +         +L++L+++ +        I       L
Sbjct: 25  VPELP---AHVNYVD---LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL 78

Query: 228 TSLNHLDLVYNNLTGQIPPS-FGNLSNLRYLFLYQNKLTGS-IPKSIL-GLKSLVSFDLS 284
           +SL  L L YN    Q+    F  L+NL  L L Q  L G+ +  +    L SL    L 
Sbjct: 79  SSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137

Query: 285 DNYLSGEIPEEVIQ-LQNLEILHLFSNNFTGKIPSSLASMPK--LQVLQLWSNQ------ 335
           DN +    P      ++   +L L  N         L +       +L+L S        
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197

Query: 336 --FSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLI-----LFSNSLEGKI 388
                E   N  K  ++T +DLS N     + +   D+ +  K+         N      
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257

Query: 389 PNSLSTCK----------SLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGE 438
             +                ++   L  +++   L S F+    +  L ++ N+++ +I +
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDD 316

Query: 439 QK-WEMTSLQMLNLAGNNFSGKLPDSF-GSDQLENLDLSENRFSGTIPRSFGRLSELMQL 496
              W +T L  LNL+ N         F   D+LE LDLS N       +SF  L  L +L
Sbjct: 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376

Query: 497 KISRNKLFGDIPEE-LSSCKKLVSLDLSNNQL 527
            +  N+L   +P+        L  + L  N  
Sbjct: 377 ALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  137 bits (346), Expect = 1e-34
 Identities = 78/410 (19%), Positives = 138/410 (33%), Gaps = 46/410 (11%)

Query: 61  THVNAIELSAKNISGKISSSIFH-LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSN 119
            HVN ++LS  +I+ +++ + F  L  ++ + +        I ++ F   +SL  L L  
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 120 NNFTGPVPIG---SLSRLEILDLSNNML-SGKIPEEIGSFSG---LKVLDLGGNVLVGEI 172
           N F   +  G    L+ LE+L L+   L    +      F     L++L L  N +    
Sbjct: 89  NQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 173 PLSI-SNITSLQIFTLASNQLIGSIPREI---GQLRNLKWIYLGYNNLSGEIPKEIGDLT 228
           P S   N+    +  L  N+ + SI  E     Q ++   + L    L            
Sbjct: 146 PASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITL------------ 192

Query: 229 SLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYL 288
                D+    L  +   +    +++  L L  N    S+ K      +     +    L
Sbjct: 193 ----QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT--KIQSLIL 246

Query: 289 SGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNL-GKQ 347
           S           +       +  F G   S       ++   L  ++    +  ++    
Sbjct: 247 S-NSYNMGSSFGHTNFKDPDNFTFKGLEASG------VKTCDLSKSKIF-ALLKSVFSHF 298

Query: 348 NNLTVIDLSTNFLTGKIPETLCDS-GSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNN 406
            +L  + L+ N +  KI +        L KL L  N L             L  + L  N
Sbjct: 299 TDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357

Query: 407 RLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNF 456
            +       F  LP +  L +  N L          +TSLQ + L  N +
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  136 bits (344), Expect = 2e-34
 Identities = 72/391 (18%), Positives = 137/391 (35%), Gaps = 40/391 (10%)

Query: 205 NLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNK 263
           ++ ++ L  N+++         L  L  L +        I   +F  LS+L  L L  N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 264 LTGSIPKSIL-GLKSLVSFDLSDNYL-SGEIPEEVIQ-LQNLEILHLFSNNFTGKIPSSL 320
               +      GL +L    L+   L    +     + L +LE+L L  NN     P+S 
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 321 -ASMPKLQVLQLWSNQFSGEIPSNL---GKQNNLTVIDLSTNFLTGKIPETLCDSGSLFK 376
             +M +  VL L  N+    I        +  + T++ LS+  L                
Sbjct: 150 FLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITL---------------- 192

Query: 377 LILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEF-TRLPLVYFLDISGNDLSGR 435
             +    L  +   +     S+  + L  N     ++  F   +       +  ++    
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

Query: 436 IGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQ 495
                         +     F G       +  ++  DLS+++    +   F   ++L Q
Sbjct: 253 GSS----FGHTNFKDPDNFTFKG-----LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ 303

Query: 496 LKISRNKLFGDIPEE-LSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGK 554
           L +++N++   I +        L+ L+LS N L          +  L  LDLS N +   
Sbjct: 304 LTLAQNEI-NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL 362

Query: 555 IPQTLGRVASLVQVNISHNHFHGSLPSTGAF 585
             Q+   + +L ++ +  N    S+P  G F
Sbjct: 363 GDQSFLGLPNLKELALDTNQLK-SVPD-GIF 391

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  138 bits (350), Expect = 2e-36
 Identities = 61/279 (21%), Positives = 102/279 (36%), Gaps = 38/279 (13%)

Query: 88  ESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFT--GPVPIGSLSRLEILDLSNNMLS 145
             I  +S  L+  +P+ I SS      L L +N            L++L  L LS+N LS
Sbjct: 10  TEIRCNSKGLT-SVPTGIPSS---ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 146 GKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRN 205
                   S  G                      TSL+   L+ N +I ++      L  
Sbjct: 66  -FKGCCSQSDFGT---------------------TSLKYLDLSFNGVI-TMSSNFLGLEQ 102

Query: 206 LKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNK 263
           L+ +   ++NL       +   L +L +LD+ + +         F  LS+L  L +  N 
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNS 161

Query: 264 LTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSNNFTGKIPSSLA 321
              +    I   L++L   DLS   L  ++       L +L++L++  NNF         
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 322 SMPKLQVLQLWSNQFSGEIPSNL--GKQNNLTVIDLSTN 358
            +  LQVL    N               ++L  ++L+ N
Sbjct: 221 CLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  128 bits (324), Expect = 7e-33
 Identities = 59/264 (22%), Positives = 102/264 (38%), Gaps = 41/264 (15%)

Query: 60  STHVNAIELSAKNISGKISSSIF-HLPHVESINLSSNQLS-GEIPSDIFSSSNSLRFLNL 117
            +    +EL +  +   +   +F  L  +  ++LSSN LS     S     + SL++L+L
Sbjct: 27  PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 118 SNNNFTG-PVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSG---LKVLDLGGNVLVGEIP 173
           S N           L +LE LD  ++ L  ++ E    F     L  LD+          
Sbjct: 86  SFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEF-SVFLSLRNLIYLDISHT------- 136

Query: 174 LSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNH 232
               +                        L +L+ + +  N+       +I  +L +L  
Sbjct: 137 ----HTRVAFNGIFNG-------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179

Query: 233 LDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYLSG 290
           LDL    L  Q+ P +F +LS+L+ L +  N    S+       L SL   D S N++  
Sbjct: 180 LDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM- 236

Query: 291 EIPEEVIQ--LQNLEILHLFSNNF 312
              ++ +Q    +L  L+L  N+F
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  124 bits (314), Expect = 2e-31
 Identities = 56/251 (22%), Positives = 97/251 (38%), Gaps = 10/251 (3%)

Query: 189 SNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQ--IPP 246
           +++ + S+P  I    +   + L  N L          LT L  L L  N L+ +     
Sbjct: 15  NSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72

Query: 247 SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVI--QLQNLEI 304
           S    ++L+YL L  N +  ++  + LGL+ L   D   + L  ++ E  +   L+NL  
Sbjct: 73  SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIY 130

Query: 305 LHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSN-LGKQNNLTVIDLSTNFLTGK 363
           L +   +           +  L+VL++  N F      +   +  NLT +DLS   L   
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190

Query: 364 IPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLP-LV 422
            P       SL  L +  N+             SL+ +    N +      E    P  +
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250

Query: 423 YFLDISGNDLS 433
            FL+++ ND +
Sbjct: 251 AFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (258), Expect = 4e-24
 Identities = 61/302 (20%), Positives = 106/302 (35%), Gaps = 60/302 (19%)

Query: 209 IYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS-FGNLSNLRYLFLYQNKLT-- 265
           I      L+  +P  I   +S   L+L  N L   +P   F  L+ L  L L  N L+  
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 266 GSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSL-ASMP 324
           G   +S  G  SL   DLS N +   +    + L+ LE L    +N       S+  S+ 
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 325 KLQVLQLWSNQFSGEIPSN-LGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNS 383
            L  L +          +      ++L V+ ++ N                       + 
Sbjct: 127 NLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGN-----------------------SF 162

Query: 384 LEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEM 443
            E  +P+  +  ++L  + L   +L                  +S    +         +
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLE----------------QLSPTAFNS--------L 198

Query: 444 TSLQMLNLAGNNFSGKLPDSF-GSDQLENLDLSENRFSGTIPRSFGRL-SELMQLKISRN 501
           +SLQ+LN++ NNF       +   + L+ LD S N    +  +      S L  L +++N
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

Query: 502 KL 503
             
Sbjct: 259 DF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  100 bits (250), Expect = 5e-23
 Identities = 53/243 (21%), Positives = 89/243 (36%), Gaps = 13/243 (5%)

Query: 349 NLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRL 408
           + T I  ++  LT  +P  +    S  +L L SN L+            L ++ L +N L
Sbjct: 8   SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 409 S--GELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSF-- 464
           S  G  S        + +LD+S N +   +      +  L+ L+   +N       S   
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 465 GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEE-LSSCKKLVSLDLS 523
               L  LD+S           F  LS L  LK++ N    +   +  +  + L  LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 524 NNQLSGHIPA-SLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST 582
             QL   +   + + +  L  L++S N            + SL  ++ S NH   +    
Sbjct: 184 QCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKK- 240

Query: 583 GAF 585
              
Sbjct: 241 QEL 243

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 44/234 (18%), Positives = 87/234 (37%), Gaps = 55/234 (23%)

Query: 58  QNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNL 117
             +T +  ++LS   +   +SS+   L  +E ++   + L       +F S  +L +L++
Sbjct: 75  FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133

Query: 118 SNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSIS 177
           S+ +                               G F+GL                   
Sbjct: 134 SHTHTR-----------------------VAFN--GIFNGL------------------- 149

Query: 178 NITSLQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDL 235
             +SL++  +A N    +   +I  +LRNL ++ L    L  ++       L+SL  L++
Sbjct: 150 --SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNM 206

Query: 236 VYNNLTGQIPPS-FGNLSNLRYLFLYQNKLTGSIPKSILG--LKSLVSFDLSDN 286
            +NN    +    +  L++L+ L    N +  +  K  L     SL   +L+ N
Sbjct: 207 SHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 77  ISSSIFH-LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSL---- 131
           +S + F+ L  ++ +N+S N     + +  +   NSL+ L+ S N+         L    
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFP 247

Query: 132 SRLEILDLSNNMLS 145
           S L  L+L+ N  +
Sbjct: 248 SSLAFLNLTQNDFA 261

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  135 bits (343), Expect = 4e-35
 Identities = 58/230 (25%), Positives = 106/230 (46%), Gaps = 23/230 (10%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL-------RNLSWERRRKVAIGIAKALR 792
           HP++V L G C       L+Y+Y+E   L   L        ++SWE+R ++ IG A+ L 
Sbjct: 94  HPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLH 153

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--YCTDSKSINSSA------YV 844
           +LH   + +++  DV    +++D    P  +++  G++       ++  S+       Y+
Sbjct: 154 YLH---TRAIIHRDVKSINILLDENFVP--KITDFGISKKGTELDQTHLSTVVKGTLGYI 208

Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHE-SIVEWARYCYSDCHLDTW 903
            PE      +TEK D+Y FG++L ++L  +S           ++ EWA   +++  L+  
Sbjct: 209 DPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQI 268

Query: 904 VDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI 953
           VDP +   +      + +  + A+ C A     RP   DV   LE   R+
Sbjct: 269 VDPNLADKIRP--ESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  136 bits (344), Expect = 3e-34
 Identities = 78/267 (29%), Positives = 125/267 (46%), Gaps = 23/267 (8%)

Query: 56  SCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFL 115
            C  S   + +    KN+  ++   I    +   +NL  NQ+   I  + F     L  L
Sbjct: 38  VCSCSNQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEIL 93

Query: 116 NLSNNNFTGPVPIGS---LSRLEILDLSNNMLSGKIPEEIGSFSG---LKVLDLGGNVLV 169
            LS N+    + IG+   L+ L  L+L +N L+  IP   G+F     LK L L  N + 
Sbjct: 94  QLSRNHIRT-IEIGAFNGLANLNTLELFDNRLT-TIPN--GAFVYLSKLKELWLRNNPIE 149

Query: 170 GEIPLSI-SNITSLQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEIGDL 227
             IP    + I SL+   L   + +  I       L NL+++ L   NL  EIP  +  L
Sbjct: 150 -SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPL 206

Query: 228 TSLNHLDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDN 286
             L+ LDL  N+L+  I P SF  L +L+ L++ Q+++      +   L+SLV  +L+ N
Sbjct: 207 IKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

Query: 287 YLSGEIPEEVIQ-LQNLEILHLFSNNF 312
            L+  +P ++   L +LE +HL  N +
Sbjct: 266 NLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  123 bits (311), Expect = 4e-30
 Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 18/260 (6%)

Query: 132 SRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQ 191
           ++   +      L  ++P+ I   +  ++L+L  N +      S  ++  L+I  L+ N 
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 192 LIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLTGQIPP-SF 248
            I +I       L NL  + L  N L+  IP      L+ L  L L  N +   IP  +F
Sbjct: 100 -IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAF 156

Query: 249 GNLSNLRYLFLYQ-NKLTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILH 306
             + +LR L L +  +L+  I +    GL +L   +L+   L  EIP  +  L  L+ L 
Sbjct: 157 NRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELD 213

Query: 307 LFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSN-LGKQNNLTVIDLSTNFLTGKIP 365
           L  N+ +   P S   +  LQ L +  +Q    I  N      +L  I+L+ N LT  +P
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLP 271

Query: 366 ETLCDS-GSLFKLILFSNSL 384
             L      L ++ L  N  
Sbjct: 272 HDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  106 bits (267), Expect = 2e-24
 Identities = 47/258 (18%), Positives = 97/258 (37%), Gaps = 13/258 (5%)

Query: 324 PKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNS 383
            +   +         E+P  +    N  +++L  N +      +      L  L L  N 
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 384 LEGKIPNSLSTCKSLRRVRLQNNRLSGELSSE-FTRLPLVYFLDISGNDLSGRIGEQKWE 442
           +      + +   +L  + L +NRL+  + +  F  L  +  L +  N +   I    + 
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFN 157

Query: 443 -MTSLQMLNLAGNNFSGKLP-DSF-GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKIS 499
            + SL+ L+L        +   +F G   L  L+L+       IP +   L +L +L +S
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLS 215

Query: 500 RNKLFGDIPEE-LSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQT 558
            N L   I          L  L +  +Q+      +   +  L +++L+ N L+      
Sbjct: 216 GNHL-SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274

Query: 559 LGRVASLVQVNISHNHFH 576
              +  L ++++ HN ++
Sbjct: 275 FTPLHHLERIHLHHNPWN 292

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  132 bits (334), Expect = 5e-34
 Identities = 53/226 (23%), Positives = 94/226 (41%), Gaps = 25/226 (11%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN------LSWERRRKVAIGIAKALRF 793
           H N+V L G         LVY Y+    L + L        LSW  R K+A G A  + F
Sbjct: 89  HENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINF 148

Query: 794 LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--YCTDSKSINSSA------YVA 845
           LH       +  D+    +++D       ++S  GLA      ++++ +S       Y+A
Sbjct: 149 LH---ENHHIHRDIKSANILLDEAFTA--KISDFGLARASEKFAQTVMTSRIVGTTAYMA 203

Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDC-HLDTWV 904
           PE    + IT K DIY FG++L++++TG    D      + +++       +   ++ ++
Sbjct: 204 PEALRGE-ITPKSDIYSFGVVLLEIITGLPAVDEHRE-PQLLLDIKEEIEDEEKTIEDYI 261

Query: 905 DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESC 950
           D  +    S     +  + ++A  C       RP    V + L+  
Sbjct: 262 DKKMNDADS---TSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEM 304

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  130 bits (330), Expect = 7e-34
 Identities = 61/255 (23%), Positives = 107/255 (41%), Gaps = 39/255 (15%)

Query: 89  SINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFT--GPVPIGSLSRLEILDLSNNMLSG 146
           + +     L   +P  I ++    + + L  N  +        +   L IL L +N+L+ 
Sbjct: 15  TTSCPQQGLQ-AVPVGIPAA---SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA- 69

Query: 147 KIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREI-GQLRN 205
           +I     +F+GL                       L+   L+ N  + S+       L  
Sbjct: 70  RIDA--AAFTGL---------------------ALLEQLDLSDNAQLRSVDPATFHGLGR 106

Query: 206 LKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNK 263
           L  ++L    L  E+   +   L +L +L L  N L   +P  +F +L NL +LFL+ N+
Sbjct: 107 LHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNR 164

Query: 264 LTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSNNFTGKIPSSLA 321
           ++ S+P+    GL SL    L  N ++  +     + L  L  L+LF+NN +     +LA
Sbjct: 165 IS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

Query: 322 SMPKLQVLQLWSNQF 336
            +  LQ L+L  N +
Sbjct: 223 PLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  113 bits (285), Expect = 8e-28
 Identities = 52/226 (23%), Positives = 80/226 (35%), Gaps = 10/226 (4%)

Query: 209 IYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSI 268
                  L   +P  I    +   + L  N ++     SF    NL  L+L+ N L   I
Sbjct: 16  TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RI 71

Query: 269 PKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSNNFTGKIPS-SLASMPK 325
             +   GL  L   DLSDN     +       L  L  LHL       ++       +  
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAA 130

Query: 326 LQVLQLWSNQFSGEIPSN-LGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSL 384
           LQ L L  N     +P +      NLT + L  N ++           SL +L+L  N +
Sbjct: 131 LQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 385 EGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGN 430
               P++      L  + L  N LS   +     L  + +L ++ N
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  113 bits (284), Expect = 8e-28
 Identities = 59/227 (25%), Positives = 95/227 (41%), Gaps = 38/227 (16%)

Query: 68  LSAKNISGKISSSIFH-LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPV 126
           L    IS  + ++ F    ++  + L SN L+  I +  F+    L  L+LS+N     V
Sbjct: 39  LHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 127 PIG---SLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQ 183
                  L RL  L L    L  ++    G F GL                      +LQ
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQ-ELGP--GLFRGL---------------------AALQ 132

Query: 184 IFTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLT 241
              L  N  + ++P +    L NL  ++L  N +S  +P+     L SL+ L L  N + 
Sbjct: 133 YLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA 190

Query: 242 GQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDN 286
             + P +F +L  L  L+L+ N L+ ++P   L  L++L    L+DN
Sbjct: 191 -HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  112 bits (282), Expect = 1e-27
 Identities = 54/222 (24%), Positives = 89/222 (40%), Gaps = 9/222 (4%)

Query: 189 SNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP-S 247
             Q + ++P  I      + I+L  N +S           +L  L L  N L  +I   +
Sbjct: 19  PQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAA 75

Query: 248 FGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEIL 305
           F  L+ L  L L  N    S+  +   GL  L +  L    L  E+   + + L  L+ L
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYL 134

Query: 306 HLFSNNFTGKIPS-SLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKI 364
           +L  N     +P  +   +  L  L L  N+ S          ++L  + L  N +    
Sbjct: 135 YLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193

Query: 365 PETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNN 406
           P    D G L  L LF+N+L      +L+  ++L+ +RL +N
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 96.2 bits (240), Expect = 6e-22
 Identities = 50/233 (21%), Positives = 90/233 (38%), Gaps = 9/233 (3%)

Query: 348 NNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNR 407
                       L   +P  +    +  ++ L  N +      S   C++L  + L +N 
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 408 LSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWE-MTSLQMLNLAGNNFSGKLPDSF-G 465
           L+   ++ FT L L+  LD+S N     +    +  +  L  L+L         P  F G
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 466 SDQLENLDLSENRFSGTIP-RSFGRLSELMQLKISRNKLFGDIPEE-LSSCKKLVSLDLS 523
              L+ L L +N     +P  +F  L  L  L +  N++   +PE        L  L L 
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLH 185

Query: 524 NNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFH 576
            N+++   P +  ++  L  L L  N LS    + L  + +L  + ++ N + 
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.5 bits (233), Expect = 5e-21
 Identities = 47/205 (22%), Positives = 75/205 (36%), Gaps = 40/205 (19%)

Query: 67  ELSAKNISGKISSSIF-HLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGP 125
            L +  ++ +I ++ F  L  +E ++LS N     +    F     L  L+L        
Sbjct: 62  WLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE- 119

Query: 126 VPIGS---LSRLEILDLSNNMLSGKIPEEIGSFSG---LKVLDLGGNVLVGEIPLSISNI 179
           +  G    L+ L+ L L +N L   +P+   +F     L  L L GN            I
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQ-ALPD--DTFRDLGNLTHLFLHGN-----------RI 165

Query: 180 TSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYN 238
           +S+                    L +L  + L  N ++  +      DL  L  L L  N
Sbjct: 166 SSVPERAFRG-------------LHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFAN 211

Query: 239 NLTGQIPPS-FGNLSNLRYLFLYQN 262
           NL+  +P      L  L+YL L  N
Sbjct: 212 NLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 500 RNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTL 559
             +    +P  + +      + L  N++S    AS      L  L L  N L+       
Sbjct: 19  PQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 560 GRVASLVQVNISHNHFHGSLPSTGAF 585
             +A L Q+++S N    S+     F
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDP-ATF 101

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  130 bits (329), Expect = 4e-33
 Identities = 63/294 (21%), Positives = 115/294 (39%), Gaps = 31/294 (10%)

Query: 84  LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFT--GPVPIGSLSRLEILDLSN 141
                    SS  L+  IPS +  +   ++ L+LSNN  T      +     L+ L L++
Sbjct: 30  CDRNGICKGSSGSLN-SIPSGLTEA---VKSLDLSNNRITYISNSDLQRCVNLQALVLTS 85

Query: 142 NMLSGKIPEEIGSFSG---LKVLDLGGNVLVGEIPLSI-SNITSLQIFTLASNQLIGSIP 197
           N ++  I E   SFS    L+ LDL  N L   +  S    ++SL    L  N    ++ 
Sbjct: 86  NGIN-TIEE--DSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLG 140

Query: 198 REI--GQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLTGQIPPSFGNLSNL 254
                  L  L+ + +G  +   +I ++    LT L  L++  ++L    P S  ++ N+
Sbjct: 141 ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200

Query: 255 RYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYLSG----EIPEEV----IQLQNLEIL 305
            +L L+  +    + +  +    S+   +L D  L      E+        I+      +
Sbjct: 201 SHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259

Query: 306 HLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSN-LGKQNNLTVIDLSTN 358
            +   +   ++   L  +  L  L+   NQ    +P     +  +L  I L TN
Sbjct: 260 KITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  122 bits (307), Expect = 3e-30
 Identities = 56/282 (19%), Positives = 101/282 (35%), Gaps = 44/282 (15%)

Query: 68  LSAKNISGKISSSIFH-LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPV 126
           LS   I+  IS+S      +++++ L+SN ++  I  D FSS  SL  L+LS N  +  +
Sbjct: 59  LSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSN-L 115

Query: 127 PIG---SLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQ 183
                  LS L  L+L  N     + E    FS L                     T LQ
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPYK-TLGET-SLFSHL---------------------TKLQ 152

Query: 184 IFTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLT 241
           I  + +      I R+    L  L+ + +  ++L      +    + +++HL L      
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI 211

Query: 242 GQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSI--------LGLKSLVSFDLSDNYLSGEI 292
             +        S++  L L    L       +        +   +  +  ++D  L  ++
Sbjct: 212 -LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QV 269

Query: 293 PEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSN 334
            + + Q+  L  L    N            +  LQ + L +N
Sbjct: 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  114 bits (288), Expect = 9e-28
 Identities = 59/290 (20%), Positives = 112/290 (38%), Gaps = 28/290 (9%)

Query: 220 IPKEIGDLTSLNHLDLVYNNLTGQIPPS-FGNLSNLRYLFLYQNKLTGSIPKSIL-GLKS 277
           IP  +    ++  LDL  N +T  I  S      NL+ L L  N +  +I +     L S
Sbjct: 46  IPSGL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGS 101

Query: 278 LVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSNNFTGKIPSSL-ASMPKLQVLQLWSNQ 335
           L   DLS NYLS  +     + L +L  L+L  N +     +SL + + KLQ+L++ +  
Sbjct: 102 LEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160

Query: 336 FSGEIPSN-LGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLST 394
              +I          L  +++  + L    P++L    ++  LIL        +   +  
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220

Query: 395 CKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGN 454
             S+  + L++  L    +  F+ L       +              +  + + + +   
Sbjct: 221 TSSVECLELRDTDLD---TFHFSELSTGETNSL-------------IKKFTFRNVKITDE 264

Query: 455 NFSGKLPDSFGSDQLENLDLSENRFSGTIPRS-FGRLSELMQLKISRNKL 503
           +    +        L  L+ S N+   ++P   F RL+ L ++ +  N  
Sbjct: 265 SLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  101 bits (253), Expect = 3e-23
 Identities = 56/289 (19%), Positives = 105/289 (36%), Gaps = 40/289 (13%)

Query: 301 NLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNL-GKQNNLTVIDLSTNF 359
            ++ L L +N  T    S L     LQ L L SN  +  I  +      +L  +DLS N+
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 360 LTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSG-ELSSEFTR 418
           L+  +                         +      SL  + L  N       +S F+ 
Sbjct: 112 LS-NLS-----------------------SSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 147

Query: 419 LPLVYFLDISGNDLSGRIGEQKWE-MTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSE 476
           L  +  L +   D   +I  + +  +T L+ L +  ++     P S  S   + +L L  
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207

Query: 477 NRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSS--------CKKLVSLDLSNNQLS 528
            +    +       S +  L++    L      ELS+             ++ +++  L 
Sbjct: 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267

Query: 529 GHIPASLSEMPVLGQLDLSENQLSGKIPQ-TLGRVASLVQVNISHNHFH 576
             +   L+++  L +L+ S NQL   +P     R+ SL ++ +  N + 
Sbjct: 268 -QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 44/202 (21%), Positives = 85/202 (42%), Gaps = 10/202 (4%)

Query: 381 SNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQK 440
           S SL   IP+ L+   +++ + L NNR++   +S+  R   +  L ++ N ++  I E  
Sbjct: 40  SGSLN-SIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDS 95

Query: 441 -WEMTSLQMLNLAGNNFSGKLPDSF-GSDQLENLDLSENRFSGTIPRS--FGRLSELMQL 496
              + SL+ L+L+ N  S      F     L  L+L  N +  T+  +  F  L++L  L
Sbjct: 96  FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQIL 154

Query: 497 KISRNKLFGDIPEE-LSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKI 555
           ++     F  I  +  +    L  L++  + L  + P SL  +  +  L L   Q    +
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214

Query: 556 PQTLGRVASLVQVNISHNHFHG 577
              +   +S+  + +       
Sbjct: 215 EIFVDVTSSVECLELRDTDLDT 236

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 77  ISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFT 123
           +   +  +  +  +  S NQL   +P  IF    SL+ + L  N + 
Sbjct: 269 VMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  114 bits (287), Expect = 6e-28
 Identities = 59/305 (19%), Positives = 120/305 (39%), Gaps = 45/305 (14%)

Query: 84  LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNM 143
           L +   I    + ++  +     +  + +  L+      T    +  L+ L  L+L +N 
Sbjct: 18  LANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ 74

Query: 144 LSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQL 203
           ++      + + + +  L+L GN         + N++++                    L
Sbjct: 75  ITD--LAPLKNLTKITELELSGN--------PLKNVSAI------------------AGL 106

Query: 204 RNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNK 263
           +++K + L    ++   P  +  L++L  L L  N +T  I P    L+NL+YL +   +
Sbjct: 107 QSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQ 162

Query: 264 LTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASM 323
           ++  +   +  L  L +    DN +S +I   +  L NL  +HL +N  +    S LA+ 
Sbjct: 163 VS-DLT-PLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDV--SPLANT 216

Query: 324 PKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKI-PETLCDSGSLFKLILFSN 382
             L ++ L +   + +        NNL V ++        I P T+ D+G+     L  N
Sbjct: 217 SNLFIVTLTNQTITNQPVF---YNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWN 273

Query: 383 SLEGK 387
                
Sbjct: 274 LTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  111 bits (280), Expect = 4e-27
 Identities = 56/257 (21%), Positives = 109/257 (42%), Gaps = 20/257 (7%)

Query: 61  THVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNN 120
            +   I     N++   + +   L  + +++     ++  I        N+L  L L +N
Sbjct: 19  ANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDN 73

Query: 121 NFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNIT 180
             T   P+ +L+++  L+LS N L  K    I     +K LDL    +    PL  + ++
Sbjct: 74  QITDLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTPL--AGLS 129

Query: 181 SLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNL 240
           +LQ+  L  NQ I +I   +  L NL+++ +G   +S   P  + +L+ L  L    N +
Sbjct: 130 NLQVLYLDLNQ-ITNIS-PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185

Query: 241 TGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQ 300
           +  I P   +L NL  + L  N+++   P  +    +L    L++  ++    + V    
Sbjct: 186 S-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN---QPVFYNN 238

Query: 301 NLEILHLFSNNFTGKIP 317
           NL + ++        I 
Sbjct: 239 NLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  107 bits (270), Expect = 1e-25
 Identities = 67/308 (21%), Positives = 121/308 (39%), Gaps = 20/308 (6%)

Query: 176 ISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDL 235
              + +        + +  ++      L  +  +      ++  I   +  L +L  L+L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLEL 70

Query: 236 VYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEE 295
             N +T  + P   NL+ +  L L  N L      +I GL+S+ + DL+   ++   P  
Sbjct: 71  KDNQIT-DLAP-LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTPLA 126

Query: 296 VIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDL 355
              L NL++L+L  N  T  I S LA +  LQ L + + Q S ++ + L   + LT +  
Sbjct: 127 --GLSNLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQVS-DL-TPLANLSKLTTLKA 180

Query: 356 STNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSE 415
             N ++  I   L    +L ++ L +N +    P  L+   +L  V L N  ++      
Sbjct: 181 DDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT--NQPV 234

Query: 416 FTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLS 475
           F    LV    + G   +        +  +    NL  N  S     S+  +Q      +
Sbjct: 235 FYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNT 294

Query: 476 ENRFSGTI 483
              FSGT+
Sbjct: 295 TVPFSGTV 302

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  105 bits (265), Expect = 5e-25
 Identities = 59/235 (25%), Positives = 95/235 (40%), Gaps = 18/235 (7%)

Query: 127 PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFT 186
           P  +L+    +    + ++           G+  L   G   V  I   +  + +L    
Sbjct: 14  PDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLE 69

Query: 187 LASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP 246
           L  NQ I  +   +  L  +  + L  N L       I  L S+  LDL    +T   P 
Sbjct: 70  LKDNQ-ITDLA-PLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP- 124

Query: 247 SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILH 306
               LSNL+ L+L  N++T +I   + GL +L    + +  +S   P  +  L  L  L 
Sbjct: 125 -LAGLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179

Query: 307 LFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLT 361
              N  +  I S LAS+P L  + L +NQ S    S L   +NL ++ L+   +T
Sbjct: 180 ADDNKIS-DI-SPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 87.4 bits (217), Expect = 7e-19
 Identities = 46/211 (21%), Positives = 88/211 (41%), Gaps = 13/211 (6%)

Query: 79  SSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILD 138
           + + +L  +  + LS N L   + +   +   S++ L+L++   T   P+  LS L++L 
Sbjct: 79  APLKNLTKITELELSGNPLK-NVSA--IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 139 LSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPR 198
           L  N ++  I   +   + L+ L +G   +    PL  +N++ L       N+ I  I  
Sbjct: 136 LDLNQIT-NI-SPLAGLTNLQYLSIGNAQVSDLTPL--ANLSKLTTLKADDNK-ISDIS- 189

Query: 199 EIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLF 258
            +  L NL  ++L  N +S   P  + + ++L  + L    +T Q      NL       
Sbjct: 190 PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NV 245

Query: 259 LYQNKLTGSIPKSILGLKSLVSFDLSDNYLS 289
           +         P +I    +  S +L+ N  S
Sbjct: 246 VKGPSGAPIAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 50/302 (16%), Positives = 102/302 (33%), Gaps = 65/302 (21%)

Query: 250 NLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFS 309
            L+N   +   ++ +T ++ ++   L  + +       ++  I E V  L NL  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKD 72

Query: 310 NNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLC 369
           N  T    + L ++ K+  L+L  N       S +    ++  +DL++  +T   P  L 
Sbjct: 73  NQITD--LAPLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 370 DSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISG 429
              +L  L L  N +   I   L+   +L+ + + N ++S                D++ 
Sbjct: 127 GLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS----------------DLTP 168

Query: 430 NDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGR 489
             L+         ++ L  L    N  S  +        L  + L  N+ S         
Sbjct: 169 --LAN--------LSKLTTLKADDNKIS-DISPLASLPNLIEVHLKNNQIS--------- 208

Query: 490 LSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSEN 549
                           D+   L++   L  + L+N  ++       + + V   +     
Sbjct: 209 ----------------DV-SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

Query: 550 QL 551
             
Sbjct: 252 AP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.0 bits (203), Expect = 5e-17
 Identities = 53/279 (18%), Positives = 103/279 (36%), Gaps = 65/279 (23%)

Query: 274 GLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWS 333
            L + +      + ++  + +    L  +  L  F    T  I   +  +  L  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKD 72

Query: 334 NQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLS 393
           NQ +    + L     +T ++LS N L                           +   ++
Sbjct: 73  NQITD--LAPLKNLTKITELELSGNPLK-------------------------NVSA-IA 104

Query: 394 TCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAG 453
             +S++ + L + +++                D++   L+G        +++LQ+L L  
Sbjct: 105 GLQSIKTLDLTSTQIT----------------DVTP--LAG--------LSNLQVLYLDL 138

Query: 454 NNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSS 513
           N  +  +    G   L+ L +   + S   P     LS+L  LK   NK+  DI   L+S
Sbjct: 139 NQIT-NISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI-SDISP-LAS 193

Query: 514 CKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLS 552
              L+ + L NNQ+S   P  L+    L  + L+   ++
Sbjct: 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 37/174 (21%), Positives = 71/174 (40%), Gaps = 14/174 (8%)

Query: 79  SSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILD 138
           + +  L +++ + L  NQ++  I     +   +L++L++ N   +   P+ +LS+L  L 
Sbjct: 123 TPLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLK 179

Query: 139 LSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPR 198
             +N +S  I   + S   L  + L  N +    PL  +N ++L I TL +  +      
Sbjct: 180 ADDNKIS-DIS-PLASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLTNQTIT----- 230

Query: 199 EIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLS 252
                 N   +    N + G     I   T  ++      NLT  +     N+S
Sbjct: 231 NQPVFYNNNLVVP--NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 468 QLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQL 527
               +   ++  + T+      L  +  L      +   I E +     L+ L+L +NQ+
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV-TTI-EGVQYLNNLIGLELKDNQI 75

Query: 528 SGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNH 574
           +  +   L  +  + +L+LS N L       +  + S+  ++++   
Sbjct: 76  T-DLAP-LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQ 118

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  112 bits (282), Expect = 2e-27
 Identities = 54/234 (23%), Positives = 81/234 (34%), Gaps = 36/234 (15%)

Query: 56  SCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFL 115
                     +    +N++  +   +        ++LS N L              L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQL 60

Query: 116 NLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLS 175
           NL     T     G+L  L  LDLS+N L                           +PL 
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-------------------------SLPLL 95

Query: 176 ISNITSLQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHL 233
              + +L +  ++ N+ + S+P      L  L+ +YL  N L   +P  +      L  L
Sbjct: 96  GQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKL 153

Query: 234 DLVYNNLTGQIPPS-FGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDN 286
            L  NNLT ++P      L NL  L L +N L  +IPK   G   L    L  N
Sbjct: 154 SLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 78.2 bits (193), Expect = 8e-16
 Identities = 50/207 (24%), Positives = 81/207 (39%), Gaps = 14/207 (6%)

Query: 371 SGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGN 430
             S  ++     +L   +P  L        + L  N L     +       +  L++   
Sbjct: 9   VASHLEVNCDKRNL-TALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 431 DLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSF-GSDQLENLDLSENRFSGTIPRS-FG 488
           +L+    +    +  L  L+L+ N     LP        L  LD+S NR + ++P     
Sbjct: 66  ELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALR 121

Query: 489 RLSELMQLKISRNKLFGDIPEEL-SSCKKLVSLDLSNNQLSGHIPASL-SEMPVLGQLDL 546
            L EL +L +  N+L   +P  L +   KL  L L+NN L+  +PA L + +  L  L L
Sbjct: 122 GLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLL 179

Query: 547 SENQLSGKIPQTLGRVASLVQVNISHN 573
            EN L   IP+       L    +  N
Sbjct: 180 QENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 44/231 (19%), Positives = 76/231 (32%), Gaps = 30/231 (12%)

Query: 247 SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILH 306
               +++   +   +  LT ++P  +                            +  ILH
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--------------------------DTTILH 37

Query: 307 LFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPE 366
           L  N       ++L    +L  L L   + + ++    G    L  +DLS N L   +P 
Sbjct: 38  LSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLPL 94

Query: 367 TLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLD 426
                 +L  L +  N L      +L     L+ + L+ N L        T  P +  L 
Sbjct: 95  LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154

Query: 427 ISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSEN 477
           ++ N+L+         + +L  L L  N+        FGS  L    L  N
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 51/210 (24%), Positives = 72/210 (34%), Gaps = 22/210 (10%)

Query: 324 PKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNS 383
                +       +  +P +L K  + T++ LS N L      TL     L +L L    
Sbjct: 10  ASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 384 LEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQK--- 440
           L  K+     T   L  + L +N+L   L      LP +  LD+S N L           
Sbjct: 67  LT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL------TSLPL 117

Query: 441 ---WEMTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRS-FGRLSELMQ 495
                +  LQ L L GN      P       +LE L L+ N  +  +P      L  L  
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDT 176

Query: 496 LKISRNKLFGDIPEELSSCKKLVSLDLSNN 525
           L +  N L   IP+       L    L  N
Sbjct: 177 LLLQENSL-YTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 9/143 (6%)

Query: 444 TSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKL 503
            S   +N    N +  LP     D    L LSEN        +    + L QL + R +L
Sbjct: 10  ASHLEVNCDKRNLT-ALPPDLPKD-TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 504 FGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQ-TLGRV 562
              +  +  +   L +LDLS+NQL   +P     +P L  LD+S N+L+  +P   L  +
Sbjct: 68  -TKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGL 123

Query: 563 ASLVQVNISHNHFHGSLPSTGAF 585
             L ++ +  N    +LP  G  
Sbjct: 124 GELQELYLKGNELK-TLPP-GLL 144

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  110 bits (277), Expect = 7e-27
 Identities = 58/229 (25%), Positives = 94/229 (41%), Gaps = 21/229 (9%)

Query: 118 SNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSG---LKVLDLGGNVLVGEIPL 174
              NF   +P       + LDLS N L   +     SF     L+VLDL    +   I  
Sbjct: 15  MELNFYK-IPDNLPFSTKNLDLSFNPLR-HLGS--YSFFSFPELQVLDLSRCEI-QTIED 69

Query: 175 SI-SNITSLQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLN 231
               +++ L    L  N +  S+       L +L+ +     NL+  +     G L +L 
Sbjct: 70  GAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLK 127

Query: 232 HLDLVYNNLTG-QIPPSFGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSL----VSFDLSD 285
            L++ +N +   ++P  F NL+NL +L L  NK+  SI  + L  L  +    +S DLS 
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 286 NYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSN 334
           N ++  I     +   L+ L L +N            +  LQ + L +N
Sbjct: 187 NPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 99.3 bits (248), Expect = 4e-23
 Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 22/201 (10%)

Query: 76  KISSSIFH-LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIG---SL 131
            + S  F   P ++ ++LS  ++   I    + S + L  L L+ N     + +G    L
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGL 99

Query: 132 SRLEILDLSNNMLSGKIPEEIGSFSG---LKVLDLGGNVL-VGEIPLSISNITSLQIFTL 187
           S L+ L      L+  +            LK L++  N++   ++P   SN+T+L+   L
Sbjct: 100 SSLQKLVAVETNLA-SLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 188 ASNQLIGSIPREI-GQLRNLKWI----YLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG 242
           +SN+ I SI       L  +  +     L  N ++  I         L  L L  N L  
Sbjct: 157 SSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK- 213

Query: 243 QIPP-SFGNLSNLRYLFLYQN 262
            +P   F  L++L+ ++L+ N
Sbjct: 214 SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 92.0 bits (229), Expect = 1e-20
 Identities = 47/222 (21%), Positives = 81/222 (36%), Gaps = 18/222 (8%)

Query: 219 EIPKEIGDLTSLNHLDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSIL-GLK 276
           +IP  +    S  +LDL +N L   +   SF +   L+ L L + ++  +I       L 
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLS 76

Query: 277 SLVSFDLSDNYLSGEIPEEVI-QLQNLEILHLFSNNFTGKIPSSLAS-MPKLQVLQLWSN 334
            L +  L+ N +   +       L +L+ L     N    + +     +  L+ L +  N
Sbjct: 77  HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN 134

Query: 335 QF-SGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDS-----GSLFKLILFSNSLEGKI 388
              S ++P       NL  +DLS+N +   I  T              L L  N +   I
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FI 192

Query: 389 PNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGN 430
                    L+ + L  N+L       F RL  +  + +  N
Sbjct: 193 QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.5 bits (194), Expect = 5e-16
 Identities = 63/298 (21%), Positives = 99/298 (33%), Gaps = 59/298 (19%)

Query: 319 SLASMPK-----LQVLQLWSNQFSGEIPSN-LGKQNNLTVIDLSTNFLTGKIPETLCDS- 371
           +   +P       + L L  N     + S        L V+DLS   +   I +    S 
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSL 75

Query: 372 GSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGND 431
             L  LIL  N ++     + S   SL+++      L          L            
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL--------ASLENFPIGH----- 122

Query: 432 LSGRIGEQKWEMTSLQMLNLAGNNF-SGKLPDSF-GSDQLENLDLSENRFSGTIPRSFGR 489
                      + +L+ LN+A N   S KLP+ F     LE+LDLS N+           
Sbjct: 123 -----------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 490 LSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSEN 549
           L ++  L +S                    LDLS N ++  I     +   L +L L  N
Sbjct: 172 LHQMPLLNLS--------------------LDLSLNPMN-FIQPGAFKEIRLKELALDTN 210

Query: 550 QLSGKIPQTLGRVASLVQVNISHNHFH---GSLPSTGAFLAINATAVAGNDLCGGDST 604
           QL         R+ SL ++ +  N +      +     +L  N+    G+  C G   
Sbjct: 211 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGK 268

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score =  111 bits (278), Expect = 9e-27
 Identities = 58/291 (19%), Positives = 97/291 (33%), Gaps = 43/291 (14%)

Query: 39  FLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHL---PHVESINLSSN 95
            L   D+     ++  I    S  +  + + A  I  +I      +     ++ + L + 
Sbjct: 48  LLKRVDTEADLGQFTDII--KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL 105

Query: 96  QLSGEIPSDIFSSSN-SLRFLNLSNNNFTGP------VPIGSLSRLEILDLSNNMLSGKI 148
           +++G  P  +  ++   L  LNL N ++         +       L++L ++        
Sbjct: 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS 165

Query: 149 PEEIGSFSGLKVLDLGGNVLVGEIPLSIS----NITSLQIFTLASNQLIGSIPREIGQLR 204
            E++  F  L  LDL  N  +GE  L  +       +LQ+  L +  +            
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM------------ 213

Query: 205 NLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNK 263
                       SG           L  LDL +N+L       S    S L  L L    
Sbjct: 214 ---------ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264

Query: 264 LTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTG 314
           L   +PK +     L   DLS N L    P    +L  +  L L  N F  
Sbjct: 265 LK-QVPKGL--PAKLSVLDLSYNRLD-RNPSP-DELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score =  101 bits (252), Expect = 2e-23
 Identities = 62/293 (21%), Positives = 103/293 (35%), Gaps = 36/293 (12%)

Query: 274 GLKSLVSFDLS-DNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLA---SMPKLQVL 329
           G +SL       D         ++I+  +L+ L + +     +I         +  LQ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 330 QLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIP 389
            L + + +G  P  L +     +  L+   ++                    ++   ++ 
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVS----------------WATRDAWLAELQ 144

Query: 390 NSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGE----QKWEMTS 445
             L     L+ + +           +    P +  LD+S N   G  G        +  +
Sbjct: 145 QWLKP--GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

Query: 446 LQMLNLAGNNF---SGKLPDSFGS-DQLENLDLSENRFSGTIPR-SFGRLSELMQLKISR 500
           LQ+L L        SG       +  QL+ LDLS N         S    S+L  L +S 
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 501 NKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSG 553
             L   +P+ L +  KL  LDLS N+L    P S  E+P +G L L  N    
Sbjct: 263 TGL-KQVPKGLPA--KLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 97.7 bits (243), Expect = 3e-22
 Identities = 54/304 (17%), Positives = 86/304 (28%), Gaps = 44/304 (14%)

Query: 171 EIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPK---EIGDL 227
           ++ L     +   +      +       +I +  +LK + +    +   I      +  +
Sbjct: 35  DVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGI 94

Query: 228 TSLNHLDLVYNNLTGQIPPSFGNLS--NLRYLFLYQNKLTGSIPK----SILGLKSLVSF 281
           + L  L L    +TG  PP     +  +L  L L                      L   
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154

Query: 282 DLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLA----SMPKLQVLQLWSNQF- 336
            ++  +      E+V     L  L L  N   G+     A      P LQVL L +    
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 337 --SGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLST 394
             SG   +    +  L  +DLS N L        C                         
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC-----------------------DW 251

Query: 395 CKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGN 454
              L  + L    L         +L     LD+S N L         E+  +  L+L GN
Sbjct: 252 PSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDR--NPSPDELPQVGNLSLKGN 306

Query: 455 NFSG 458
            F  
Sbjct: 307 PFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.1 bits (213), Expect = 3e-18
 Identities = 44/236 (18%), Positives = 77/236 (32%), Gaps = 22/236 (9%)

Query: 366 ETLCDSGSLFKLILFSN-SLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRL----P 420
           E      SL  L+   +   +      +    SL+R+ ++  R+   +     R+     
Sbjct: 37  ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISG 96

Query: 421 LVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSD-------QLENLD 473
           L   L +   +++G       E T   +  L   N S    D++ ++        L+ L 
Sbjct: 97  LQE-LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 474 LSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSC----KKLVSLDLSNNQ--- 526
           +++                L  L +S N   G+     + C      L  L L N     
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 527 LSGHIPASLSEMPVLGQLDLSENQLSGKIP-QTLGRVASLVQVNISHNHFHGSLPS 581
            SG   A  +    L  LDLS N L       +    + L  +N+S       +P 
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 39/218 (17%), Positives = 70/218 (32%), Gaps = 39/218 (17%)

Query: 11  LFLSFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSA 70
           L L      G     LL      +     L N   +        +       +  + ++ 
Sbjct: 100 LTLENLEVTGTAPPPLLEATGP-DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 71  KNISGKISSSIFHLPHVESINLSSNQLSGEIP---------------------------- 102
            +        +   P + +++LS N   GE                              
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 103 --SDIFSSSNSLRFLNLSNNNFTGPVPIGS---LSRLEILDLSNNMLSGKIPEEIGSFSG 157
             S + ++   L+ L+LS+N+        S    S+L  L+LS   L  ++P+ +   + 
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAK 275

Query: 158 LKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGS 195
           L VLDL  N L    P S   +  +   +L  N  + S
Sbjct: 276 LSVLDLSYNRL-DRNP-SPDELPQVGNLSLKGNPFLDS 311

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  109 bits (274), Expect = 4e-26
 Identities = 46/242 (19%), Positives = 87/242 (35%), Gaps = 35/242 (14%)

Query: 740 HPNIVRLHGVCR----SEKAAYLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRF 793
           H NI++  G  +     +   +L+  + E   LS+ L+   +SW     +A  +A+ L +
Sbjct: 77  HENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAY 136

Query: 794 LH-------FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--YCTDSKSINSSA-- 842
           LH           P++   D+    V++         ++  GLA  +     + ++    
Sbjct: 137 LHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTA--CIADFGLALKFEAGKSAGDTHGQV 194

Query: 843 ----YVAPE-----TKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHE-SIVEWAR 892
               Y+APE         +D   + D+Y  GL+L +L +  + AD     +     E   
Sbjct: 195 GTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIG 254

Query: 893 YCYSDCHLDTWV-----DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTL 947
              S   +   V      P +R +       +  +      C   D  AR  A  V + +
Sbjct: 255 QHPSLEDMQEVVVHKKKRPVLRDYWQKHAG-MAMLCETIEECWDHDAEARLSAGCVGERI 313

Query: 948 ES 949
             
Sbjct: 314 TQ 315

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  109 bits (275), Expect = 4e-26
 Identities = 60/339 (17%), Positives = 112/339 (33%), Gaps = 50/339 (14%)

Query: 88  ESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGS---LSRLEILDLSNNML 144
                  ++++ EIPSD+  +      L          +  G+      LE +++S N +
Sbjct: 12  RVFLCQESKVT-EIPSDLPRN---AIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDV 66

Query: 145 SGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLR 204
              I      FS L  L         EI +  +N     +  +               L 
Sbjct: 67  LEVIEA--DVFSNLPKLH--------EIRIEKAN----NLLYINPEAFQN--------LP 104

Query: 205 NLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLTGQIPP-SFGNLS-NLRYLFLYQ 261
           NL+++ +    +   +P            LD+  N     I   SF  LS     L+L +
Sbjct: 105 NLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163

Query: 262 NKLTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSNNFTGKIPSS 319
           N +   I  S   G +        +N L  E+P +V        IL +            
Sbjct: 164 NGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG 221

Query: 320 LASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLIL 379
           L ++ KL+    ++ +   ++P+ L K   L    L+            C   +  + I 
Sbjct: 222 LENLKKLRARSTYNLK---KLPT-LEKLVALMEASLTYPS-------HCCAFANWRRQIS 270

Query: 380 FSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTR 418
             + +  K          + + R Q + L+ +  S ++R
Sbjct: 271 ELHPICNK-SILRQEVDYMTQARGQRSSLAEDNESSYSR 308

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  101 bits (252), Expect = 5e-23
 Identities = 46/234 (19%), Positives = 84/234 (35%), Gaps = 23/234 (9%)

Query: 66  IELSAKNISGKISSSIFH-LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTG 124
           +      +   I    F     +E I +S N +   I +D+FS+   L  + +   N   
Sbjct: 35  LRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93

Query: 125 PVPIG---SLSRLEILDLSNNMLSGKIPEEIGSFSG---LKVLDLGGNVLVGEIP-LSIS 177
            +      +L  L+ L +SN  +   +P+            +LD+  N+ +  I   S  
Sbjct: 94  YINPEAFQNLPNLQYLLISNTGIK-HLPD--VHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 178 NITS-LQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLD 234
            ++    I  L  N  I  I        +  +      NNL  E+P ++    +    LD
Sbjct: 151 GLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILD 208

Query: 235 LVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNY 287
           +    +   +P     NL  LR    Y  K    +P ++  L +L+   L+   
Sbjct: 209 ISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 81.8 bits (202), Expect = 1e-16
 Identities = 50/301 (16%), Positives = 77/301 (25%), Gaps = 58/301 (19%)

Query: 229 SLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNY 287
           S        + +T +IP       N   L     KL   I K    G   L   ++S N 
Sbjct: 10  SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQND 65

Query: 288 LSGEIPEEVIQ-LQNLEILHLFSNNFTGKIPSS-LASMPKLQVLQLWSNQFSGEIPSNLG 345
           +   I  +V   L  L  + +   N    I      ++P LQ L + +      +P    
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHK 124

Query: 346 KQN-NLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQ 404
             +    ++D+  N     I        S   L                       + L 
Sbjct: 125 IHSLQKVLLDIQDNINIHTIER-----NSFVGL-----------------SFESVILWLN 162

Query: 405 NNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSF 464
            N +    +S F    L        N+L                  L  + F G      
Sbjct: 163 KNGIQEIHNSAFNGTQLDELNLSDNNNLE----------------ELPNDVFHG-ASG-- 203

Query: 465 GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSN 524
                  LD+S  R           L +L        K        L     L+   L+ 
Sbjct: 204 ----PVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT----LEKLVALMEASLTY 255

Query: 525 N 525
            
Sbjct: 256 P 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.9 bits (171), Expect = 8e-13
 Identities = 49/241 (20%), Positives = 90/241 (37%), Gaps = 17/241 (7%)

Query: 349 NLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRL 408
           +  V     + +T +IP  L    +  +L      L      + S    L ++ +  N +
Sbjct: 10  SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 409 SGELSSE-FTRLPLVYFLDIS-GNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDS--F 464
              + ++ F+ LP ++ + I   N+L     E    + +LQ L ++       LPD    
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKI 125

Query: 465 GSDQLENLDLSENRFSGTIP-RSFGRLS-ELMQLKISRNKLFGDIPEE-LSSCKKLVSLD 521
            S Q   LD+ +N    TI   SF  LS E + L +++N +  +I     +  +      
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNL 184

Query: 522 LSNNQLSGHIPA-SLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLP 580
             NN L   +P            LD+S  ++       L  +  L   +  +      LP
Sbjct: 185 SDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP 240

Query: 581 S 581
           +
Sbjct: 241 T 241

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.8 bits (163), Expect = 9e-12
 Identities = 41/205 (20%), Positives = 69/205 (33%), Gaps = 13/205 (6%)

Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWE-MTSL 446
           IP+ L    +   +R    +L       F+    +  ++IS ND+   I    +  +  L
Sbjct: 24  IPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 447 QMLNLAGNNFSGKLPDSF--GSDQLENLDLSENRFSGTIPR-SFGRLSELMQLKISRNKL 503
             + +   N    +          L+ L +S       +P        + + L I  N  
Sbjct: 82  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNIN 140

Query: 504 FGDIPEELSS--CKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSE-NQLSGKIPQTLG 560
              I          + V L L+ N +   I  S      L +L+LS+ N L         
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 561 RVASLVQVNISHNHFHGSLPSTGAF 585
             +  V ++IS    H SLPS    
Sbjct: 200 GASGPVILDISRTRIH-SLPS-YGL 222

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 24/145 (16%), Positives = 53/145 (36%), Gaps = 9/145 (6%)

Query: 445 SLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLF 504
           S ++     +  + ++P     +    L     +       +F    +L +++IS+N + 
Sbjct: 10  SNRVFLCQESKVT-EIPSDLPRN-AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 505 GDIPEE-LSSCKKLVSLDLSN-NQLSGHIPAS-LSEMPVLGQLDLSENQLSGKIPQ-TLG 560
             I  +  S+  KL  + +   N L  +I       +P L  L +S   +   +P     
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKI 125

Query: 561 RVASLVQVNISHNHFHGSLPSTGAF 585
                V ++I  N    ++    +F
Sbjct: 126 HSLQKVLLDIQDNINIHTIER-NSF 149

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  111 bits (278), Expect = 2e-25
 Identities = 65/345 (18%), Positives = 108/345 (31%), Gaps = 71/345 (20%)

Query: 88  ESINLSSNQLSGEIPSDIFSSSN--SLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLS 145
                 S  +       IF           NL   + T  V    L+ ++ +  +N+ + 
Sbjct: 2   GETITVSTPIK-----QIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK 56

Query: 146 GKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRN 205
             + + I     +  L L GN         +++I  L                    L+N
Sbjct: 57  -SV-QGIQYLPNVTKLFLNGN--------KLTDIKPL------------------TNLKN 88

Query: 206 LKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLT 265
           L W++L  N +  ++   + DL  L  L L +N ++  I     +L  L  L+L  NK+T
Sbjct: 89  LGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT 144

Query: 266 GSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPK 325
                 I  L  L                       L+ L L  N  +  I   LA + K
Sbjct: 145 -----DITVLSRLT---------------------KLDTLSLEDNQIS-DI-VPLAGLTK 176

Query: 326 LQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLE 385
           LQ L L  N  S ++   L    NL V++L +     K      +      +     SL 
Sbjct: 177 LQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

Query: 386 GKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGN 430
              P  +S      +  ++ +         F     V        
Sbjct: 235 --TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  110 bits (276), Expect = 4e-25
 Identities = 57/271 (21%), Positives = 104/271 (38%), Gaps = 40/271 (14%)

Query: 84  LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNM 143
                  NL    ++  +     +  NS+  +  +N++      I  L  +  L L+ N 
Sbjct: 20  FAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK 76

Query: 144 LSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQL 203
           L+  I + + +   L  L L  N         I +++SL+                   L
Sbjct: 77  LT-DI-KPLTNLKNLGWLFLDEN--------KIKDLSSLK------------------DL 108

Query: 204 RNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNK 263
           + LK + L +N +S +I   +  L  L  L L  N +T  I      L+ L  L L  N+
Sbjct: 109 KKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQ 164

Query: 264 LTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASM 323
           ++  I   + GL  L +  LS N++S ++   +  L+NL++L LFS     K  +  +++
Sbjct: 165 IS-DIV-PLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNL 220

Query: 324 PKLQVLQLWSNQFSGEIP-SNLGKQNNLTVI 353
                ++            S+ G      V 
Sbjct: 221 VVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 251

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 99.0 bits (246), Expect = 1e-21
 Identities = 51/301 (16%), Positives = 103/301 (34%), Gaps = 45/301 (14%)

Query: 61  THVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDI--FSSSNSLRFLNLS 118
                  L  K+++   + +   L  ++ I  +++ +       +       ++  L L+
Sbjct: 21  AETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI-----KSVQGIQYLPNVTKLFLN 73

Query: 119 NNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISN 178
            N  T   P+ +L  L  L L  N +   +   +     LK L L  N         IS+
Sbjct: 74  GNKLTDIKPLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHN--------GISD 123

Query: 179 ITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYN 238
           I  L                    L  L+ +YLG N ++      +  LT L+ L L  N
Sbjct: 124 INGLV------------------HLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDN 163

Query: 239 NLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQ 298
            ++  I P    L+ L+ L+L +N ++  + +++ GLK+L   +L       +       
Sbjct: 164 QIS-DIVP-LAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSN 219

Query: 299 LQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTN 358
           L     +     +     P  ++     +   +  +        +      +T+      
Sbjct: 220 LVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

Query: 359 F 359
           F
Sbjct: 278 F 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 86.7 bits (214), Expect = 1e-17
 Identities = 61/345 (17%), Positives = 114/345 (33%), Gaps = 91/345 (26%)

Query: 230 LNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLS 289
           +     V   +  QI P     +      L +  +T ++ ++   L S+     +++ + 
Sbjct: 1   MGETITVSTPIK-QIFP-DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 290 GEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNN 349
             + + +  L N+  L L  N  T  I   L ++  L  L L  N+   ++ S+L     
Sbjct: 57  -SV-QGIQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKIK-DL-SSLKDLKK 110

Query: 350 LTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLS 409
           L  + L  N ++                      + G     L     L  + L NN+++
Sbjct: 111 LKSLSLEHNGIS---------------------DING-----LVHLPQLESLYLGNNKIT 144

Query: 410 GELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQL 469
                           DI+   LS         +T L  L+L  N  S  +    G  +L
Sbjct: 145 ----------------DITV--LSR--------LTKLDTLSLEDNQIS-DIVPLAGLTKL 177

Query: 470 ENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSG 529
           +NL LS+N                    IS      D+   L+  K L  L+L + +   
Sbjct: 178 QNLYLSKN-------------------HIS------DL-RALAGLKNLDVLELFSQECLN 211

Query: 530 HIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNH 574
                 S + V   +  ++  L    P+ +       + N+  + 
Sbjct: 212 KPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHL 254

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.6 bits (193), Expect = 4e-15
 Identities = 46/235 (19%), Positives = 92/235 (39%), Gaps = 15/235 (6%)

Query: 342 SNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRV 401
                       +L    +T     T  +  S+ ++I  ++ ++  +   +    ++ ++
Sbjct: 15  FPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKL 70

Query: 402 RLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLP 461
            L  N+L+       T L  + +L +  N +   +   K ++  L+ L+L  N  S  + 
Sbjct: 71  FLNGNKLTDI--KPLTNLKNLGWLFLDENKIK-DLSSLK-DLKKLKSLSLEHNGIS-DIN 125

Query: 462 DSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLD 521
                 QLE+L L  N+ +        RL++L  L +  N++  DI   L+   KL +L 
Sbjct: 126 GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI-SDI-VPLAGLTKLQNLY 181

Query: 522 LSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFH 576
           LS N +S  + A L+ +  L  L+L   +   K       +     V  +     
Sbjct: 182 LSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.3 bits (174), Expect = 8e-13
 Identities = 41/248 (16%), Positives = 77/248 (31%), Gaps = 35/248 (14%)

Query: 79  SSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILD 138
           SS+  L  ++S++L  N +S +I          L  L L NN  T    +  L++L+ L 
Sbjct: 103 SSLKDLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKITDITVLSRLTKLDTLS 159

Query: 139 LSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPR 198
           L +N        +I     L                  + +T LQ   L+ N  I  +  
Sbjct: 160 LEDN--------QISDIVPL------------------AGLTKLQNLYLSKNH-ISDLR- 191

Query: 199 EIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG----QIPPSFGNLSNL 254
            +  L+NL  + L       +      +L   N +     +L           +   +  
Sbjct: 192 ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 251

Query: 255 RYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTG 314
            +L  + N+++    + +   K+   F         E+      +    I          
Sbjct: 252 WHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRI 311

Query: 315 KIPSSLAS 322
             P     
Sbjct: 312 TAPKPPTK 319

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score =  101 bits (253), Expect = 2e-24
 Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 7/167 (4%)

Query: 173 PLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNH 232
            ++ + + SL   TLA+   +  +   I    N+K + +   + +      I  L++L  
Sbjct: 37  NITEAQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLER 92

Query: 233 LDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEI 292
           L ++  ++T    P+   L++L  L +  +    SI   I  L  + S DLS N    +I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 293 PEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGE 339
              +  L  L+ L++  +         +   PKL  L  +S    G+
Sbjct: 153 -MPLKTLPELKSLNIQFDGVH-DY-RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 95.8 bits (239), Expect = 1e-22
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 35/228 (15%)

Query: 87  VESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSG 146
            E   L ++Q +  IP   F +  +         + T  +    ++ L  + L+N  ++ 
Sbjct: 3   AEQTGLKASQDNVNIPDSTFKAYLNGLL----GQSSTANITEAQMNSLTYITLANINVT- 57

Query: 147 KIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNL 206
            +   I     +K L +             +N   +                    L NL
Sbjct: 58  DL-TGIEYAHNIKDLTINNI--------HATNYNPI------------------SGLSNL 90

Query: 207 KWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTG 266
           + + +   +++ +    +  LTSL  LD+ ++     I      L  +  + L  N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 267 SIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTG 314
            I   +  L  L S ++  + +       +     L  L+ FS    G
Sbjct: 151 DI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 95.0 bits (237), Expect = 2e-22
 Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 7/164 (4%)

Query: 199 EIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLF 258
              Q+ +L +I L   N++ ++   I    ++  L +   + T    P    LSNL  L 
Sbjct: 39  TEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATN-YNP-ISGLSNLERLR 94

Query: 259 LYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPS 318
           +    +T     ++ GL SL   D+S +     I  ++  L  +  + L  N     I  
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M 153

Query: 319 SLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTG 362
            L ++P+L+ L +  +         +     L  +   +  + G
Sbjct: 154 PLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 93.1 bits (232), Expect = 1e-21
 Identities = 32/174 (18%), Positives = 71/174 (40%), Gaps = 12/174 (6%)

Query: 71  KNISGKISSSIFHLPHVESINLSSNQLSGEIPSDI--FSSSNSLRFLNLSNNNFTGPVPI 128
           ++ +  I+ +   +  +  I L++  ++     D+     +++++ L ++N + T   PI
Sbjct: 32  QSSTANITEA--QMNSLTYITLANINVT-----DLTGIEYAHNIKDLTINNIHATNYNPI 84

Query: 129 GSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLA 188
             LS LE L +    ++      +   + L +LD+  +     I   I+ +  +    L+
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 189 SNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG 242
            N  I  I   +  L  LK + + ++ +       I D   LN L      + G
Sbjct: 145 YNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.8 bits (195), Expect = 8e-17
 Identities = 32/207 (15%), Positives = 62/207 (29%), Gaps = 31/207 (14%)

Query: 205 NLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKL 264
             K    G    S         + SL ++ L   N+T  +        N++ L +     
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHA 78

Query: 265 TGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMP 324
           T     +   +  L                      NLE L +   + T     +L+ + 
Sbjct: 79  T-----NYNPISGLS---------------------NLERLRIMGKDVTSDKIPNLSGLT 112

Query: 325 KLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSL 384
            L +L +  +     I + +     +  IDLS N     I   L     L  L +  + +
Sbjct: 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGV 171

Query: 385 EGKIPNSLSTCKSLRRVRLQNNRLSGE 411
                  +     L ++   +  + G+
Sbjct: 172 HDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 28/182 (15%), Positives = 68/182 (37%), Gaps = 32/182 (17%)

Query: 373 SLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDL 432
           SL  + L + ++   +   +    +++ + + N   +                + +   +
Sbjct: 45  SLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHAT----------------NYNP--I 84

Query: 433 SGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLS 491
           SG        +++L+ L + G + +     +      L  LD+S +    +I      L 
Sbjct: 85  SG--------LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 492 ELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQL 551
           ++  + +S N    DI   L +  +L SL++  + +  +    + + P L QL      +
Sbjct: 137 KVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

Query: 552 SG 553
            G
Sbjct: 194 GG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 14/138 (10%)

Query: 442 EMTSLQMLNLAGNNFS-----GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQL 496
           +M SL  + LA  N +                +++L ++    +   P     LS L +L
Sbjct: 42  QMNSLTYITLANINVTDLTGIEYAH------NIKDLTINNIHATNYNP--ISGLSNLERL 93

Query: 497 KISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIP 556
           +I    +  D    LS    L  LD+S++     I   ++ +P +  +DLS N     I 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI- 152

Query: 557 QTLGRVASLVQVNISHNH 574
             L  +  L  +NI  + 
Sbjct: 153 MPLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 6e-09
 Identities = 17/102 (16%), Positives = 43/102 (42%), Gaps = 4/102 (3%)

Query: 66  IELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNF-TG 124
           + +  K+++     ++  L  +  +++S +     I + I ++   +  ++LS N   T 
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITD 151

Query: 125 PVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGN 166
            +P+ +L  L+ L++  + +       I  F  L  L     
Sbjct: 152 IMPLKTLPELKSLNIQFDGVH-DY-RGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 17/115 (14%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 467 DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQ 526
              +         S T   +  +++ L  + ++   +  D+   +     +  L ++N  
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINV-TDL-TGIEYAHNIKDLTINNIH 77

Query: 527 LSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPS 581
            + + P  +S +  L +L +    ++      L  + SL  ++ISH+    S+ +
Sbjct: 78  ATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  101 bits (254), Expect = 3e-24
 Identities = 44/218 (20%), Positives = 85/218 (38%), Gaps = 16/218 (7%)

Query: 175 SISNI-TSLQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLN 231
            I ++  S Q   L     + +IP      L N+  IY+  +    ++      +L+ + 
Sbjct: 25  RIPSLPPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83

Query: 232 HLDLVYNNLTGQIPPS-FGNLSNLRYLFLYQNKLTGSIP--KSILGLKSLVSFDLSDNYL 288
           H+++        I P     L  L++L ++   L    P    +         +++DN  
Sbjct: 84  HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPY 142

Query: 289 SGEIPEEVIQ-LQN-LEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNL-- 344
              IP    Q L N    L L++N FT  +     +  KL  + L  N++   I  +   
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201

Query: 345 GKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSN 382
           G  +  +++D+S   +T  +P    +   L +LI  + 
Sbjct: 202 GVYSGPSLLDVSQTSVT-ALPSKGLE--HLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 92.0 bits (229), Expect = 5e-21
 Identities = 37/196 (18%), Positives = 73/196 (37%), Gaps = 14/196 (7%)

Query: 77  ISSSIFH-LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIG---SLS 132
           I S  F  LP++  I +S +    ++ S  F + + +  + + N      +       L 
Sbjct: 46  IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105

Query: 133 RLEILDLSNNMLSGKIPEE--IGSFSGLKVLDLGGNVLVGEIPL-SISNITS-LQIFTLA 188
            L+ L + N  L    P+   + S     +L++  N  +  IP+ +   + +      L 
Sbjct: 106 LLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164

Query: 189 SNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEI--GDLTSLNHLDLVYNNLTGQIPP 246
           +N    S+         L  +YL  N     I K+   G  +  + LD+   ++T  +P 
Sbjct: 165 NNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS 222

Query: 247 -SFGNLSNLRYLFLYQ 261
               +L  L     + 
Sbjct: 223 KGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 71.2 bits (175), Expect = 9e-14
 Identities = 39/277 (14%), Positives = 85/277 (30%), Gaps = 61/277 (22%)

Query: 228 TSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDN 286
                  +   ++  +IP       + + L L +  L  +IP      L ++    +S +
Sbjct: 11  HQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSID 65

Query: 287 YLSGEIPEEV-IQLQNLEILHLFSNNFTGKIPSS-LASMPKLQVLQLWSNQFSGEIP--S 342
               ++       L  +  + + +      I    L  +P L+ L +++       P  +
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLT 124

Query: 343 NLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVR 402
            +   +   +++++ N     IP       +   L                 C     ++
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPV-----NAFQGL-----------------CNETLTLK 162

Query: 403 LQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLP- 461
           L NN  +                 + G   +G         T L  + L  N +   +  
Sbjct: 163 LYNNGFT----------------SVQGYAFNG---------TKLDAVYLNKNKYLTVIDK 197

Query: 462 DSFG--SDQLENLDLSENRFSGTIPRSFGRLSELMQL 496
           D+FG        LD+S+   +    +    L EL+  
Sbjct: 198 DAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 32/250 (12%), Positives = 83/250 (33%), Gaps = 59/250 (23%)

Query: 301 NLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNL-GKQNNLTVIDLSTNF 359
           + + L L   +       + +++P +  + +  +    ++ S+     + +T I++    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 360 LTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRL 419
               I                        P++L     L+ + + N  L           
Sbjct: 92  NLTYID-----------------------PDALKELPLLKFLGIFNTGL--------KMF 120

Query: 420 PLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLP-DSFG--SDQLENLDLSE 476
           P +  +                      +L +  N +   +P ++F    ++   L L  
Sbjct: 121 PDLTKVY---------------STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165

Query: 477 NRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEE----LSSCKKLVSLDLSNNQLSGHIP 532
           N F+ ++       ++L  + +++NK    I ++    + S      LD+S   ++  +P
Sbjct: 166 NGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS--GPSLLDVSQTSVT-ALP 221

Query: 533 A-SLSEMPVL 541
           +  L  +  L
Sbjct: 222 SKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 39/214 (18%), Positives = 81/214 (37%), Gaps = 15/214 (7%)

Query: 348 NNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNR 407
           +      ++   +  +IP       S   L L    L     ++ S   ++ R+ +  + 
Sbjct: 11  HQEEDFRVTCKDIQ-RIPSLPP---STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 408 LSGELSSE-FTRLPLVYFLDISGNDLSGRIGEQK-WEMTSLQMLNLAGNNFSGKLPDS-- 463
              +L S  F  L  V  ++I        I      E+  L+ L +         PD   
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTK 125

Query: 464 -FGSDQLENLDLSENRFSGTIP-RSFGRL-SELMQLKISRNKLFGDIPEELSSCKKLVSL 520
            + +D    L++++N +  +IP  +F  L +E + LK+  N     +     +  KL ++
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAV 184

Query: 521 DLSNNQLSGHIPA-SLSEMP-VLGQLDLSENQLS 552
            L+ N+    I   +   +      LD+S+  ++
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  102 bits (257), Expect = 4e-24
 Identities = 62/261 (23%), Positives = 108/261 (41%), Gaps = 17/261 (6%)

Query: 103 SDIFSSSN--SLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKV 160
             IFS          NL   + T  V    L+ ++ +  +N+ +   + + I     +  
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTK 72

Query: 161 LDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEI 220
           L L GN L    PL  +N+ +L    L  N+ +  +   +  L+ LK + L +N +S +I
Sbjct: 73  LFLNGNKLTDIKPL--ANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSLEHNGIS-DI 127

Query: 221 PKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVS 280
              +  L  L  L L  N +T  I      L+ L  L L  N+++  I   + GL  L +
Sbjct: 128 N-GLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQN 182

Query: 281 FDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSG-E 339
             LS N++S ++   +  L+NL++L LFS     K  +  +++     ++         E
Sbjct: 183 LYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE 240

Query: 340 IPSNLGKQNNLTVIDLSTNFL 360
           I S+ G      V      F 
Sbjct: 241 IISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 48/255 (18%), Positives = 92/255 (36%), Gaps = 43/255 (16%)

Query: 61  THVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDI--FSSSNSLRFLNLS 118
                  L  K+++   + +   L  ++ I  +++ +       +       ++  L L+
Sbjct: 24  AETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI-----KSVQGIQYLPNVTKLFLN 76

Query: 119 NNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISN 178
            N  T   P+ +L  L  L L  N +   +   +     LK L L  N         IS+
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHN--------GISD 126

Query: 179 ITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYN 238
           I  L                    L  L+ +YLG N ++      +  LT L+ L L  N
Sbjct: 127 INGLV------------------HLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDN 166

Query: 239 NLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQ 298
            ++  I P    L+ L+ L+L +N ++  + +++ GLK+L   +L       +       
Sbjct: 167 QIS-DIVP-LAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSN 222

Query: 299 LQNLEILHLFSNNFT 313
           L     +     +  
Sbjct: 223 LVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.1 bits (211), Expect = 3e-18
 Identities = 52/231 (22%), Positives = 96/231 (41%), Gaps = 19/231 (8%)

Query: 61  THVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSN--SLRFLNLS 118
             ++ I  +  +I   +   I +LP+V  + L+ N+L     +DI   +N  +L +L L 
Sbjct: 46  NSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKL-----TDIKPLANLKNLGWLFLD 98

Query: 119 NNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISN 178
            N       +  L +L+ L L +N +S  I   +     L+ L LG N +  +I   +S 
Sbjct: 99  ENKVKDLSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT-DIT-VLSR 154

Query: 179 ITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYN 238
           +T L   +L  NQ I  I   +  L  L+ +YL  N++S ++ + +  L +L+ L+L   
Sbjct: 155 LTKLDTLSLEDNQ-ISDIV-PLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQ 210

Query: 239 NLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLS 289
               +      NL     +      L    P+ I         ++  +   
Sbjct: 211 ECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 52/278 (18%), Positives = 98/278 (35%), Gaps = 63/278 (22%)

Query: 274 GLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWS 333
                +  +L    ++  + +   +L +++ +   +++    +   +  +P +  L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77

Query: 334 NQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLS 393
           N+ + +I   L    NL  + L  N +   +  +L D   L  L L  N +   I   L 
Sbjct: 78  NKLT-DI-KPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DING-LV 131

Query: 394 TCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAG 453
               L  + L NN+++                DI+   LS         +T L  L+L  
Sbjct: 132 HLPQLESLYLGNNKIT----------------DITV--LSR--------LTKLDTLSLED 165

Query: 454 NNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSS 513
           N  S  +    G  +L+NL LS+N                    IS      D+   L+ 
Sbjct: 166 NQIS-DIVPLAGLTKLQNLYLSKN-------------------HIS------DL-RALAG 198

Query: 514 CKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQL 551
            K L  L+L + +         S + V   +  ++  L
Sbjct: 199 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.7 bits (171), Expect = 5e-13
 Identities = 46/225 (20%), Positives = 91/225 (40%), Gaps = 15/225 (6%)

Query: 349 NLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRL 408
                +L    +T     T  +  S+ ++I  ++ ++  +   +    ++ ++ L  N+L
Sbjct: 25  ETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKL 80

Query: 409 SGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQ 468
           +         L  + +L +  N +   +   K ++  L+ L+L  N  S  +       Q
Sbjct: 81  TDI--KPLANLKNLGWLFLDENKVK-DLSSLK-DLKKLKSLSLEHNGIS-DINGLVHLPQ 135

Query: 469 LENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLS 528
           LE+L L  N+   T      RL++L  L +  N++  DI   L+   KL +L LS N +S
Sbjct: 136 LESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHIS 191

Query: 529 GHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHN 573
             + A L+ +  L  L+L   +   K       +     V  +  
Sbjct: 192 -DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.1 bits (154), Expect = 8e-11
 Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 15/199 (7%)

Query: 376 KLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGR 435
           + I     ++ +I +         +  L+   ++         L  +  +  + +D+   
Sbjct: 6   ETITVPTPIK-QIFS-DDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV 61

Query: 436 IGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQ 495
            G Q   + ++  L L GN  +  +        L  L L EN+           L +L  
Sbjct: 62  QGIQY--LPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKS 116

Query: 496 LKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKI 555
           L +  N +  DI   L    +L SL L NN+++      LS +  L  L L +NQ+S  I
Sbjct: 117 LSLEHNGI-SDI-NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DI 171

Query: 556 PQTLGRVASLVQVNISHNH 574
              L  +  L  + +S NH
Sbjct: 172 VP-LAGLTKLQNLYLSKNH 189

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 3/118 (2%)

Query: 79  SSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILD 138
           + +  L  +++++L  NQ+S +I     +    L+ L LS N+ +    +  L  L++L+
Sbjct: 150 TVLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 206

Query: 139 LSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSI 196
           L +     K      +      +      LV    +S               +    +
Sbjct: 207 LFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 264

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  101 bits (254), Expect = 6e-24
 Identities = 54/258 (20%), Positives = 98/258 (37%), Gaps = 43/258 (16%)

Query: 713 VKKI----IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL 768
           VK       +  + T  +   +   F  L  HPNI+ L GVC  E    LV E+  G  L
Sbjct: 35  VKAARHDPDEDISQTIENVRQEAKLFAML-KHPNIIALRGVCLKEPNLCLVMEFARGGPL 93

Query: 769 SEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSV 826
           + VL    +  +     A+ IA+ + +LH      ++  D+    +++  K E     + 
Sbjct: 94  NRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNK 153

Query: 827 P------GLA---YCTDSKS-INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
                  GLA   + T   S   + A++APE   +   ++  D++ +G++L +LLTG+ P
Sbjct: 154 ILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVP 213

Query: 877 ADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV-----SSIQNEIVEIMNLALHCTA 931
                             +                +     S+      ++M     C  
Sbjct: 214 ------------------FRGIDGLAVAYGVAMNKLALPIPSTCPEPFAKLME---DCWN 252

Query: 932 GDPTARPCASDVTKTLES 949
            DP +RP  +++   L +
Sbjct: 253 PDPHSRPSFTNILDQLTT 270

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  101 bits (254), Expect = 8e-24
 Identities = 61/318 (19%), Positives = 116/318 (36%), Gaps = 66/318 (20%)

Query: 657 EDGIWEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSS-YKVRSLANDMQFVVKK 715
           +  +  +          +  ++ I              G     +K R + +     +K 
Sbjct: 10  KSRLPTLAD------NEIEYEKQIGK------------GGFGLVHKGRLVKDKSVVAIKS 51

Query: 716 IIDVNTITTSSFWPDVSQFGK--LIM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELS 769
           +I  ++   +       +F +   IM    HPNIV+L+G+        +V E++   +L 
Sbjct: 52  LILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMH--NPPRMVMEFVPCGDLY 109

Query: 770 EVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRL 824
             L +    + W  + ++ + IA  + ++  + +P +V  D+    + +   DE   +  
Sbjct: 110 HRLLDKAHPIKWSVKLRLMLDIALGIEYMQ-NQNPPIVHRDLRSPNIFLQSLDENAPVCA 168

Query: 825 SVP--GLAYCTDSKSINSSA----YVAPE--TKESKDITEKGDIYGFGLILIDLLTGKSP 876
            V   GL+      S++       ++APE    E +  TEK D Y F +IL  +LTG+ P
Sbjct: 169 KVADFGLS-QQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGP 227

Query: 877 ADADFGVHESIVEWARYCYSDCHLDTWVD-----PFIRGHVSSIQNEIVEIMNLALHCTA 931
                        +  Y Y        +      P I          +  ++     C +
Sbjct: 228 -------------FDEYSYGKIKFINMIREEGLRPTIPEDCPP---RLRNVIE---LCWS 268

Query: 932 GDPTARPCASDVTKTLES 949
           GDP  RP  S + K L  
Sbjct: 269 GDPKKRPHFSYIVKELSE 286

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  104 bits (261), Expect = 1e-23
 Identities = 88/472 (18%), Positives = 145/472 (30%), Gaps = 82/472 (17%)

Query: 158 LKVLDLGGNVLVGE-IPLSISNITSLQIFTLASNQL----IGSIPREIGQLRNLKWIYLG 212
           ++ LD+    L        +  +   Q+  L    L       I   +     L  + L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 213 YNNLSGEIPKEIGDL-----TSLNHLDLVYNNLTGQ----IPPSFGNLSNLRYLFLYQNK 263
            N L       +          +  L L    LTG     +  +   L  L+ L L  N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 264 LTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGK----IPSS 319
           L  +      GL+ L    L                  LE L L   + +      + S 
Sbjct: 125 LGDA------GLQLLCEGLLDPQC-------------RLEKLQLEYCSLSAASCEPLASV 165

Query: 320 LASMPKLQVLQLWSNQFSGEIPSNLGK-----QNNLTVIDLSTNFLTGK----IPETLCD 370
           L + P  + L + +N  +      L +        L  + L +  +T      +   +  
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225

Query: 371 SGSLFKLILFSNSLEGK-----IPNSLSTCKSLRRVRLQNNRLSGE----LSSEFTRLPL 421
             SL +L L SN L         P  L     LR + +    ++ +    L         
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285

Query: 422 VYFLDISGNDLSG----RIGEQ-KWEMTSLQMLNLAGNNFSGKLPDSFGS-----DQLEN 471
           +  L ++GN+L       + E        L+ L +   +F+      F S       L  
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345

Query: 472 LDLSENRFSGTIPRSFGRL-----SELMQLKISRNKL----FGDIPEELSSCKKLVSLDL 522
           L +S NR      R   +      S L  L ++   +       +   L +   L  LDL
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405

Query: 523 SNNQLSGHIPASLSEM-----PVLGQLDLSENQLSGKIPQTLGRVASLVQVN 569
           SNN L       L E       +L QL L +   S ++   L    +L +  
Sbjct: 406 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL---QALEKDK 454

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 94.6 bits (236), Expect = 2e-20
 Identities = 79/455 (17%), Positives = 148/455 (32%), Gaps = 92/455 (20%)

Query: 57  CQNSTHVNAIELSAKNISGK----ISSSIFHLPHVESINLSSNQLSGE----IPSDIFSS 108
                    + L    ++      ISS++   P +  +NL SN+L       +   + + 
Sbjct: 24  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83

Query: 109 SNSLRFLNLSNNNFT--GPVPIGSL----SRLEILDLSNNMLSGKIPEEIGSFSGLKVLD 162
           S  ++ L+L N   T  G   + S       L+ L LS+N+L           +GL++L 
Sbjct: 84  SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD---------AGLQLL- 133

Query: 163 LGGNVLVGEIPLSISNITSLQIFTLASNQL----IGSIPREIGQLRNLKWIYLGYNNLSG 218
                        +     L+   L    L       +   +    + K + +  N+++ 
Sbjct: 134 ---------CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184

Query: 219 EIPKEIGDL-----TSLNHLDLVYNNLTGQ----IPPSFGNLSNLRYLFLYQNKLTGSIP 269
              + +          L  L L    +T      +     + ++LR L L  NKL     
Sbjct: 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244

Query: 270 KSIL-----GLKSLVSFDLSDNYLSGE----IPEEVIQLQNLEILHLFSNNFTGKIPSSL 320
             +          L +  + +  ++ +    +   +   ++L+ L L  N    +    L
Sbjct: 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304

Query: 321 ASM-----PKLQVLQLWSNQFSGE----IPSNLGKQNNLTVIDLSTNFLTGKIPETLCDS 371
                    +L+ L + S  F+        S L +   L  + +S N L         D+
Sbjct: 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE--------DA 356

Query: 372 GSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGE----LSSEFTRLPLVYFLDI 427
           G    +      L    P S      LR + L +  +S      L++       +  LD+
Sbjct: 357 G----VRELCQGL--GQPGS-----VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405

Query: 428 SGNDLSGRIGEQKWEM-----TSLQMLNLAGNNFS 457
           S N L      Q  E        L+ L L    +S
Sbjct: 406 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 43/265 (16%), Positives = 84/265 (31%), Gaps = 61/265 (23%)

Query: 349 NLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRL 408
           ++  +D+    L+      L                       L  C+ +R   L +  L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPL--------------------LQQCQVVR---LDDCGL 40

Query: 409 SGE----LSSEFTRLPLVYFLDISGNDLSGR----IGEQ-KWEMTSLQMLNLAGNNFSGK 459
           +      +SS     P +  L++  N+L       + +  +     +Q L+L     +G 
Sbjct: 41  TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100

Query: 460 ----LPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQ--------LKISRNKL--- 503
               L  +  +   L+ L LS+N            L E +         L++    L   
Sbjct: 101 GCGVLSSTLRTLPTLQELHLSDNLLG---DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157

Query: 504 -FGDIPEELSSCKKLVSLDLSNNQLSG----HIPASLSEMPV-LGQLDLSENQLSGKIPQ 557
               +   L +      L +SNN ++      +   L + P  L  L L    ++    +
Sbjct: 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217

Query: 558 TLGRV----ASLVQVNISHNHFHGS 578
            L  +    ASL ++ +  N     
Sbjct: 218 DLCGIVASKASLRELALGSNKLGDV 242

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 99.3 bits (248), Expect = 3e-23
 Identities = 63/209 (30%), Positives = 103/209 (49%), Gaps = 24/209 (11%)

Query: 89  SINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIG---SLSRLEILDLSNNMLS 145
           S++ SS +L+  IPS+I +     + L+L +N  +  +P      L++L +L L++N L 
Sbjct: 20  SVDCSSKKLT-AIPSNIPAD---TKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQ 74

Query: 146 GKIPEEIGSFSG---LKVLDLGGNVLVGEIPLSI-SNITSLQIFTLASNQLIGSIPREI- 200
             +P   G F     L+ L +  N L   +P+ +   + +L    L  NQ + S+P  + 
Sbjct: 75  -TLPA--GIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVF 129

Query: 201 GQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTGQIPPS-FGNLSNLRYLF 258
             L  L ++ LGYN L   +PK + D LTSL  L L  N L  ++P   F  L+ L+ L 
Sbjct: 130 DSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLK 187

Query: 259 LYQNKLTGSIPKSIL-GLKSLVSFDLSDN 286
           L  N+L   +P+     L+ L    L +N
Sbjct: 188 LDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 95.0 bits (237), Expect = 1e-21
 Identities = 63/268 (23%), Positives = 110/268 (41%), Gaps = 56/268 (20%)

Query: 94  SNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIG 153
           +  L  +    + S +N+   ++ S+   T  +P    +  + LDL +N LS  +P    
Sbjct: 1   NEAL-CKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIPADTKKLDLQSNKLS-SLPS--K 55

Query: 154 SFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREI-GQLRNLKWIYLG 212
           +F  L                     T L++  L  N+L  ++P  I  +L+NL+ +++ 
Sbjct: 56  AFHRL---------------------TKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVT 93

Query: 213 YNNLSGEIPKEIGD-LTSLNHLDLVYNNLTGQIPPS-FGNLSNLRYLFLYQNKLTGSIPK 270
            N L   +P  + D L +L  L L  N L   +PP  F +L+ L YL L  N+L  S+PK
Sbjct: 94  DNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPK 150

Query: 271 SILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQ 330
            +        FD               +L +L+ L L++N        +   + +L+ L+
Sbjct: 151 GV--------FD---------------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187

Query: 331 LWSNQFSGEIPSNLGKQNNLTVIDLSTN 358
           L +NQ              L ++ L  N
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 93.5 bits (233), Expect = 3e-21
 Identities = 53/193 (27%), Positives = 80/193 (41%), Gaps = 34/193 (17%)

Query: 76  KISSSIFH-LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIG---SL 131
            + S  FH L  +  + L+ N+L   +P+ IF    +L  L +++N     +PIG    L
Sbjct: 51  SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQL 108

Query: 132 SRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQ 191
             L  L L  N L   +P     F  L                     T L   +L  N+
Sbjct: 109 VNLAELRLDRNQLK-SLPP--RVFDSL---------------------TKLTYLSLGYNE 144

Query: 192 LIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTGQIPPSFG 249
           L  S+P+ +  +L +LK + L  N L   +P+   D LT L  L L  N L      +F 
Sbjct: 145 L-QSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202

Query: 250 NLSNLRYLFLYQN 262
           +L  L+ L L +N
Sbjct: 203 SLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 47/227 (20%), Positives = 77/227 (33%), Gaps = 51/227 (22%)

Query: 301 NLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNL-GKQNNLTVIDLSTNF 359
           + + L L SN  +     +   + KL++L L  N+    +P+ +  +  NL  + ++ N 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 360 LTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRL 419
           L                      +L   + + L    +L  +RL  N+L       F  L
Sbjct: 97  LQ---------------------ALPIGVFDQLV---NLAELRLDRNQLKSLPPRVFDSL 132

Query: 420 PLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENR 478
                                   T L  L+L  N         F     L+ L L  N+
Sbjct: 133 ------------------------TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168

Query: 479 FSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNN 525
                  +F +L+EL  LK+  N+L         S +KL  L L  N
Sbjct: 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.6 bits (145), Expect = 9e-10
 Identities = 52/240 (21%), Positives = 82/240 (34%), Gaps = 60/240 (25%)

Query: 319 SLASMPK-----LQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGS 373
            L ++P       + L L SN+ S        +   L ++ L+ N L             
Sbjct: 27  KLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ------------ 74

Query: 374 LFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLS 433
                    +L   I   L    +L  + + +N+L       F +L              
Sbjct: 75  ---------TLPAGIFKELK---NLETLWVTDNKLQALPIGVFDQL-------------- 108

Query: 434 GRIGEQKWEMTSLQMLNLAGNNFSGKLPDS-FGS-DQLENLDLSENRFSGTIP-RSFGRL 490
                      +L  L L  N     LP   F S  +L  L L  N    ++P   F +L
Sbjct: 109 ----------VNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKL 156

Query: 491 SELMQLKISRNKLFGDIPEEL-SSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSEN 549
           + L +L++  N+L   +PE       +L +L L NNQL      +   +  L  L L EN
Sbjct: 157 TSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 52/226 (23%), Positives = 85/226 (37%), Gaps = 27/226 (11%)

Query: 361 TGKIPETLCD-SGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRL 419
             K    +C  + +   +   S  L   IP+++      +++ LQ+N+LS   S  F RL
Sbjct: 4   LCKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIPA--DTKKLDLQSNKLSSLPSKAFHRL 60

Query: 420 PLVYFLDISGNDLS--------GRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSD--QL 469
             +  L ++ N L                  + +L+ L +  N     LP         L
Sbjct: 61  TKLRLLYLNDNKLQTLPAGIFKE--------LKNLETLWVTDNKLQ-ALPIGVFDQLVNL 111

Query: 470 ENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEEL-SSCKKLVSLDLSNNQLS 528
             L L  N+     PR F  L++L  L +  N+L   +P+ +      L  L L NNQL 
Sbjct: 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLK 170

Query: 529 GHIPASL-SEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHN 573
             +P     ++  L  L L  NQL          +  L  + +  N
Sbjct: 171 -RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 99.3 bits (248), Expect = 7e-23
 Identities = 60/285 (21%), Positives = 109/285 (38%), Gaps = 61/285 (21%)

Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM----HPNIVRLHGVCRSEKA 755
            KV         V+K++I  +  T  +F  +V      +M    HPN+++  GV   +K 
Sbjct: 27  IKVTHRETGEVMVMKELIRFDEETQRTFLKEVK-----VMRCLEHPNVLKFIGVLYKDKR 81

Query: 756 AYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLH----FHC---SP---- 800
              + EYI+G  L  ++++      W +R   A  IA  + +LH     H    S     
Sbjct: 82  LNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLV 141

Query: 801 ----SVVAGD--VSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDI 854
               +VV  D  ++  +++VD K +P    S+           + +  ++APE    +  
Sbjct: 142 RENKNVVVADFGLA--RLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSY 199

Query: 855 TEKGDIYGFGLILIDLLTGK------SPADADFGVHESIVEWAR-YCYSDCHLDTWVDPF 907
            EK D++ FG++L +++          P   DFG+  ++  +   YC  +C         
Sbjct: 200 DEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGL--NVRGFLDRYCPPNCPP------- 250

Query: 908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR 952
                            + + C   DP  RP    +   LE+   
Sbjct: 251 -------------SFFPITVRCCDLDPEKRPSFVKLEHWLETLRM 282

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 99.3 bits (248), Expect = 8e-23
 Identities = 56/246 (22%), Positives = 108/246 (43%), Gaps = 30/246 (12%)

Query: 713 VKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL 772
           +K+I   +     +F  ++ Q  ++  HPNIV+L+G C       LV EY EG  L  VL
Sbjct: 36  IKQIESESER--KAFIVELRQLSRVN-HPNIVKLYGACL--NPVCLVMEYAEGGSLYNVL 90

Query: 773 RN------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSV 826
                    +        +  ++ + +LH     +++  D+ P  +++       L++  
Sbjct: 91  HGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGG-TVLKICD 149

Query: 827 PGLA---YCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV 883
            G A       + +  S+A++APE  E  + +EK D++ +G+IL +++T + P D + G 
Sbjct: 150 FGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFD-EIGG 208

Query: 884 HESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
               + WA   ++         P I     ++   I  +M     C + DP+ RP   ++
Sbjct: 209 PAFRIMWA--VHNGTRP-----PLI----KNLPKPIESLMT---RCWSKDPSQRPSMEEI 254

Query: 944 TKTLES 949
            K +  
Sbjct: 255 VKIMTH 260

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 96.9 bits (242), Expect = 3e-22
 Identities = 54/257 (21%), Positives = 99/257 (38%), Gaps = 45/257 (17%)

Query: 712 VVKKII--DVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL--VYEYIEGKE 767
           VVK +   D +T  +  F  +  +      HPN++ + G C+S  A +   +  ++    
Sbjct: 37  VVKVLKVRDWSTRKSRDFNEECPRLRIFS-HPNVLPVLGACQSPPAPHPTLITHWMPYGS 95

Query: 768 LSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL 822
           L  VL       +   +  K A+ +A+ + FLH    P +    ++   V++D       
Sbjct: 96  LYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH-TLEPLIPRHALNSRSVMIDEDM--TA 152

Query: 823 RLSVPGLAYCTDSKS-INSSAYVAPE---TKESKDITEKGDIYGFGLILIDLLTGK---- 874
           R+S+  + +   S   + + A+VAPE    K         D++ F ++L +L+T +    
Sbjct: 153 RISMADVKFSFQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFA 212

Query: 875 --SPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAG 932
             S  +    V    +E  R             P I   +S     + ++M     C   
Sbjct: 213 DLSNMEIGMKV---ALEGLR-------------PTIPPGISP---HVSKLMK---ICMNE 250

Query: 933 DPTARPCASDVTKTLES 949
           DP  RP    +   LE 
Sbjct: 251 DPAKRPKFDMIVPILEK 267

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 98.0 bits (244), Expect = 3e-22
 Identities = 38/250 (15%), Positives = 71/250 (28%), Gaps = 40/250 (16%)

Query: 740 HPNIVRLHGVCRSEKAA-----YLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALR 792
           H NI R         A       LV EY     L + L      W    ++A  + + L 
Sbjct: 66  HDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLA 125

Query: 793 FLH------FHCSPSVVAGDVSPGKVIVDGKDEPHL------RLSVPGLAYCTDSKSINS 840
           +LH       H  P++   D++   V+V       +                   +   +
Sbjct: 126 YLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAA 185

Query: 841 SA------YVAPE-------TKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESI 887
            +      Y+APE        ++ +   ++ D+Y  GLI  ++    +       V E  
Sbjct: 186 ISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQ 245

Query: 888 VEWARYCYSDCHLDTWVD--------PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPC 939
           + +     +    +            P            +  +      C   D  AR  
Sbjct: 246 MAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLT 305

Query: 940 ASDVTKTLES 949
           A    + +  
Sbjct: 306 AQXAEERMAE 315

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 96.1 bits (239), Expect = 2e-21
 Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 37/205 (18%)

Query: 135 EILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIG 194
            IL  S   L   +P+ +   S   +LDL  N        ++S + +    T        
Sbjct: 21  NILSCSKQQLP-NVPQSL--PSYTALLDLSHN--------NLSRLRAEWTPT-------- 61

Query: 195 SIPREIGQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLTGQIPP-SFGNLS 252
                  +L NL  + L +N+L+  I  E    + +L +LDL  N+L   +    F +L 
Sbjct: 62  -------RLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQ 112

Query: 253 NLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQ----LQNLEILHL 307
            L  L LY N +   + ++    +  L    LS N +S   P E+I+    L  L +L L
Sbjct: 113 ALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDL 170

Query: 308 FSNNFTGKIPSSLASMPKLQVLQLW 332
            SN       + L  +P      L+
Sbjct: 171 SSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 85.3 bits (211), Expect = 7e-18
 Identities = 43/184 (23%), Positives = 65/184 (35%), Gaps = 35/184 (19%)

Query: 85  PHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGS---LSRLEILDLSN 141
            +   ++LS N LS        +   +L  L LS+N+    +   +   +  L  LDLS+
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSS 97

Query: 142 NMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREI- 200
           N L   + E    FS L                      +L++  L +N  I  + R   
Sbjct: 98  NHLH-TLDE--FLFSDL---------------------QALEVLLLYNNH-IVVVDRNAF 132

Query: 201 GQLRNLKWIYLGYNNLSGEIPKEI----GDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRY 256
             +  L+ +YL  N +S   P E+      L  L  LDL  N L          L     
Sbjct: 133 EDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

Query: 257 LFLY 260
             LY
Sbjct: 192 NGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.3 bits (180), Expect = 7e-14
 Identities = 47/197 (23%), Positives = 75/197 (38%), Gaps = 35/197 (17%)

Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQ 447
           +P SL +      + L +N LS  L +E+T   L                      T+L 
Sbjct: 33  VPQSLPS--YTALLDLSHNNLS-RLRAEWTPTRL----------------------TNLH 67

Query: 448 MLNLAGNNFSGKLPDSF-GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGD 506
            L L+ N+ +    ++F     L  LDLS N         F  L  L  L +  N +   
Sbjct: 68  SLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI-VV 126

Query: 507 IPEE-LSSCKKLVSLDLSNNQLSGHIPA----SLSEMPVLGQLDLSENQLSGKIPQTLGR 561
           +         +L  L LS NQ+S   P       +++P L  LDLS N+L       L +
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185

Query: 562 VASLVQ--VNISHNHFH 576
           + + V+  + + +N   
Sbjct: 186 LPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 15/151 (9%)

Query: 444 TSLQMLNLAGNNFSGKLPDSF--GSDQLENLDLSENRFSGTIPR-SFGRLSELMQLKISR 500
           +   +L+L+ NN S    +        L +L LS N  +  I   +F  +  L  L +S 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 501 NKLFGDIPEE-LSSCKKLVSLDLSNNQLSGHIPA-SLSEMPVLGQLDLSENQLSGKIP-- 556
           N L   + E   S  + L  L L NN +   +   +  +M  L +L LS+NQ+S + P  
Sbjct: 98  NHL-HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVE 154

Query: 557 --QTLGRVASLVQVNISHNHFHGSLPSTGAF 585
             +   ++  L+ +++S N     LP     
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLK-KLPL-TDL 183

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 29/185 (15%)

Query: 301 NLEILHLFSNNFTGKIPS--SLASMPKLQVLQLWSNQFSGEIPSN-LGKQNNLTVIDLST 357
              +L L  NN + ++ +  +   +  L  L L  N  +  I S       NL  +DLS+
Sbjct: 40  YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 358 NFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFT 417
           N L         D  +L  L+L++N +     N+      L+++ L  N++        +
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI--------S 149

Query: 418 RLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFG---SDQLENLDL 474
           R P+    D +              +  L +L+L+ N              +     L L
Sbjct: 150 RFPVELIKDGNK-------------LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

Query: 475 SENRF 479
             N  
Sbjct: 197 HNNPL 201

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 91.2 bits (227), Expect = 4e-20
 Identities = 52/256 (20%), Positives = 100/256 (39%), Gaps = 44/256 (17%)

Query: 713 VKKII--DVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE 770
           VK ++  D +    + F  +V+   +L  HPNIV   G         +V EY+    L  
Sbjct: 65  VKILMEQDFHAERVNEFLREVAIMKRL-RHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYR 123

Query: 771 VLRN------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRL 824
           +L        L   RR  +A  +AK + +LH + +P +V  ++    ++VD   +  +++
Sbjct: 124 LLHKSGAREQLDERRRLSMAYDVAKGMNYLH-NRNPPIVHRNLKSPNLLVD--KKYTVKV 180

Query: 825 SVPGLA------YCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPAD 878
              GL+      + +   +  +  ++APE    +   EK D+Y FG+IL +L T + P  
Sbjct: 181 CDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQP-- 238

Query: 879 ADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV-----SSIQNEIVEIMNLALHCTAGD 933
                           + + +    V              ++  ++  I+     C   +
Sbjct: 239 ----------------WGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAAIIE---GCWTNE 279

Query: 934 PTARPCASDVTKTLES 949
           P  RP  + +   L  
Sbjct: 280 PWKRPSFATIMDLLRP 295

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 90.5 bits (225), Expect = 7e-20
 Identities = 46/247 (18%), Positives = 86/247 (34%), Gaps = 45/247 (18%)

Query: 740 HPNIVRLHGVCRSEKAA----YLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRF 793
           H NI+       + + +    +L+  Y E   L + L+   L      ++ + IA  L  
Sbjct: 61  HENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAH 120

Query: 794 LH-----FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSINSSA-- 842
           LH         P++   D+    ++V         ++  GLA      T+   + ++   
Sbjct: 121 LHIEIFGTQGKPAIAHRDLKSKNILVK--KNGQCCIADLGLAVMHSQSTNQLDVGNNPRV 178

Query: 843 ----YVAPE------TKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWAR 892
               Y+APE        +  D  ++ DI+ FGL+L ++            V +    +  
Sbjct: 179 GTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNG---IVEDYKPPFYD 235

Query: 893 YCYSDCHLDTWVD--------PFIRGHVSSIQ--NEIVEIMNLALHCTAGDPTARPCASD 942
              +D   +            P I     S      + ++M     C   +P+AR  A  
Sbjct: 236 VVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMK---ECWYQNPSARLTALR 292

Query: 943 VTKTLES 949
           + KTL  
Sbjct: 293 IKKTLTK 299

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 88.2 bits (219), Expect = 2e-19
 Identities = 53/272 (19%), Positives = 91/272 (33%), Gaps = 52/272 (19%)

Query: 88  ESINLSSNQLSGEIPSDIFSSSN--SLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLS 145
           ESI      ++      +F      +    NL   + T  V    LS ++  +  N+ + 
Sbjct: 1   ESI-QRPTPIN-----QVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ 54

Query: 146 GKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRN 205
             +   +  F+ LK L L  N         IS+++ L+                   L  
Sbjct: 55  -SL-AGMQFFTNLKELHLSHN--------QISDLSPLK------------------DLTK 86

Query: 206 LKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLT 265
           L+ + +  N L   +         L+ L L  N L      S  +L NL  L +  NKL 
Sbjct: 87  LEELSVNRNRLK-NL--NGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK 141

Query: 266 GSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPK 325
            SI   +  L  L   DL  N ++      + +L+ +  + L       +    +   P+
Sbjct: 142 -SIV-MLGFLSKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDLTGQKCVNE---PVKYQPE 194

Query: 326 LQVL----QLWSNQFSGEIPSNLGKQNNLTVI 353
           L +            S    SN G   +  V+
Sbjct: 195 LYITNTVKDPDGRWISPYYISNGGSYVDGCVL 226

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 83.9 bits (208), Expect = 6e-18
 Identities = 50/286 (17%), Positives = 97/286 (33%), Gaps = 45/286 (15%)

Query: 200 IGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFL 259
              L N     LG  +++  +     +L+ + + +   +N+   +       +NL+ L L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHL 70

Query: 260 YQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSS 319
             N+++  +   +  L  L    ++ N L   +    I    L  L L +N        S
Sbjct: 71  SHNQIS-DL-SPLKDLTKLEELSVNRNRLK-NL--NGIPSACLSRLFLDNNELRD--TDS 123

Query: 320 LASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLIL 379
           L  +  L++L + +N+    I   LG  + L V+DL  N +T                  
Sbjct: 124 LIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEIT------------------ 163

Query: 380 FSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQ 439
              +  G     L+  K +  + L   +     +      P +Y  +    D  GR    
Sbjct: 164 ---NTGG-----LTRLKKVNWIDLTGQKCV---NEPVKYQPELYITNTV-KDPDGRWISP 211

Query: 440 KW--EMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTI 483
            +     S     +           S+   +  N+  +E  F GT+
Sbjct: 212 YYISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEAIFDGTV 257

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 42/233 (18%), Positives = 77/233 (33%), Gaps = 41/233 (17%)

Query: 79  SSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILD 138
                L +    NL    ++  +        + ++  N  N+N      +   + L+ L 
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELH 69

Query: 139 LSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPR 198
           LS+N +S  +   +   + L+ L +  N         + N+  +                
Sbjct: 70  LSHNQIS-DL-SPLKDLTKLEELSVNRN--------RLKNLNGI---------------- 103

Query: 199 EIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLF 258
                  L  ++L  N L       +  L +L  L +  N L   I    G LS L  L 
Sbjct: 104 ---PSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLD 156

Query: 259 LYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNN 311
           L+ N++T +    +  LK +   DL+         E V     L I +   + 
Sbjct: 157 LHGNEIT-NT-GGLTRLKKVNWIDLTGQKCV---NEPVKYQPELYITNTVKDP 204

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 45/256 (17%), Positives = 93/256 (36%), Gaps = 17/256 (6%)

Query: 61  THVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNN 120
            +     L  ++++  + S    L  V++ N  ++ +   +         +L+ L+LS+N
Sbjct: 19  ANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQ-SLAG--MQFFTNLKELHLSHN 73

Query: 121 NFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNIT 180
             +   P+  L++LE L ++ N L   +       + L  L L  N L     L   ++ 
Sbjct: 74  QISDLSPLKDLTKLEELSVNRNRLK-NL--NGIPSACLSRLFLDNNELRDTDSL--IHLK 128

Query: 181 SLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNL 240
           +L+I ++ +N+ + SI   +G L  L+ + L  N ++      +  L  +N +DL     
Sbjct: 129 NLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDLTGQKC 184

Query: 241 TGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQ 300
             +       L     +     +     P  I    S V   +          E   +  
Sbjct: 185 VNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWELPV-YTDEVSYKFS 241

Query: 301 NLEILHLFSNNFTGKI 316
               +      F G +
Sbjct: 242 EYINVGETEAIFDGTV 257

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.7 bits (153), Expect = 9e-11
 Identities = 31/211 (14%), Positives = 64/211 (30%), Gaps = 38/211 (18%)

Query: 318 SSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKL 377
                +       L     +     +  + + +   +   + +   +   +    +L +L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKEL 68

Query: 378 ILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIG 437
            L  N +   +   L     L  + +  NRL                 +++G        
Sbjct: 69  HLSHNQIS-DLSP-LKDLTKLEELSVNRNRLK----------------NLNGI------- 103

Query: 438 EQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLK 497
                   L  L L  N              LE L +  N+   +I    G LS+L  L 
Sbjct: 104 ----PSACLSRLFLDNNELR-DTDSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLD 156

Query: 498 ISRNKLFGDIPEELSSCKKLVSLDLSNNQLS 528
           +  N++  +    L+  KK+  +DL+  +  
Sbjct: 157 LHGNEI-TNT-GGLTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 39/198 (19%), Positives = 76/198 (38%), Gaps = 16/198 (8%)

Query: 376 KLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGR 435
           + I     +  ++        +  +  L    ++         L  V   +   +++   
Sbjct: 1   ESIQRPTPIN-QVFP-DPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSL 56

Query: 436 IGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQ 495
            G Q    T+L+ L+L+ N  S  L       +LE L ++ NR       +    + L +
Sbjct: 57  AGMQF--FTNLKELHLSHNQIS-DLSPLKDLTKLEELSVNRNRLKNL---NGIPSACLSR 110

Query: 496 LKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKI 555
           L +  N+L  D  + L   K L  L + NN+L   I   L  +  L  LDL  N+++   
Sbjct: 111 LFLDNNELR-DT-DSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNTG 166

Query: 556 PQTLGRVASLVQVNISHN 573
              L R+  +  ++++  
Sbjct: 167 G--LTRLKKVNWIDLTGQ 182

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 89.8 bits (223), Expect = 2e-19
 Identities = 50/247 (20%), Positives = 84/247 (34%), Gaps = 45/247 (18%)

Query: 740 HPNIVRLHGVCRSEKAA----YLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRF 793
           H NI+           +    YL+ +Y E   L + L++  L  +   K+A      L  
Sbjct: 90  HENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCH 149

Query: 794 LH-----FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSINSSA-- 842
           LH         P++   D+    ++V         ++  GLA      T+   I  +   
Sbjct: 150 LHTEIFSTQGKPAIAHRDLKSKNILVK--KNGTCCIADLGLAVKFISDTNEVDIPPNTRV 207

Query: 843 ----YVAPE------TKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWAR 892
               Y+ PE       +         D+Y FGLIL ++            V E  + +  
Sbjct: 208 GTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVS---GGIVEEYQLPYHD 264

Query: 893 YCYSDCHLDTWVD--------PFIRGHVSSIQ--NEIVEIMNLALHCTAGDPTARPCASD 942
              SD   +   +        P      SS +   ++ ++M     C A +P +R  A  
Sbjct: 265 LVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMT---ECWAHNPASRLTALR 321

Query: 943 VTKTLES 949
           V KTL  
Sbjct: 322 VKKTLAK 328

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 87.3 bits (217), Expect = 7e-19
 Identities = 51/224 (22%), Positives = 85/224 (37%), Gaps = 29/224 (12%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHF 796
           H NIV +  V   +   YLV EYIEG  LSE + +   LS +        I   ++  H 
Sbjct: 70  HQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHD 129

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS-------AYVAPETK 849
                +V  D+ P  +++D      L++   G+A      S+  +        Y +PE  
Sbjct: 130 M---RIVHRDIKPQNILID--SNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQA 184

Query: 850 ESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR 909
           + +   E  DIY  G++L ++L G+ P + +     + V  A       H+   V     
Sbjct: 185 KGEATDECTDIYSIGIVLYEMLVGEPPFNGE-----TAVSIA---IK--HIQDSVPNVTT 234

Query: 910 GHVSSIQNEIVEIMNLALHCTAGDPTARP-CASDVTKTLESCFR 952
                I   +  ++   L  T  D   R     ++   L S   
Sbjct: 235 DVRKDIPQSLSNVI---LRATEKDKANRYKTIQEMKDDLSSVLH 275

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 86.4 bits (214), Expect = 3e-18
 Identities = 49/247 (19%), Positives = 85/247 (34%), Gaps = 45/247 (18%)

Query: 740 HPNIVRLHGVCRSEKAA----YLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRF 793
           H NI+        +       +LV +Y E   L + L    ++ E   K+A+  A  L  
Sbjct: 95  HENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAH 154

Query: 794 LH-----FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSINSSA-- 842
           LH         P++   D+    ++V         ++  GLA      TD+  I  +   
Sbjct: 155 LHMEIVGTQGKPAIAHRDLKSKNILVK--KNGTCCIADLGLAVRHDSATDTIDIAPNHRV 212

Query: 843 ----YVAPE------TKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWAR 892
               Y+APE        +  +  ++ DIY  GL+  ++    S         +  + +  
Sbjct: 213 GTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGG---IHEDYQLPYYD 269

Query: 893 YCYSDCHLDTWVD--------PFIRGHVSSIQ--NEIVEIMNLALHCTAGDPTARPCASD 942
              SD  ++            P I     S +    + +IM     C   +  AR  A  
Sbjct: 270 LVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMR---ECWYANGAARLTALR 326

Query: 943 VTKTLES 949
           + KTL  
Sbjct: 327 IKKTLSQ 333

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 83.9 bits (208), Expect = 8e-18
 Identities = 63/207 (30%), Positives = 96/207 (46%), Gaps = 21/207 (10%)

Query: 88  ESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGK 147
              NL    ++ +  +   +  NS+  +  +N++      I  L  +  L L  N L   
Sbjct: 22  IKANLKKKSVT-DAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH-- 76

Query: 148 IPEEIGSFSGL---KVLDLGGNVLVGEIPLSI-SNITSLQIFTLASNQLIGSIPREI-GQ 202
              +I +   L     L L GN L   +P  +   +T+L+   L  NQL  S+P  +  +
Sbjct: 77  ---DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDK 131

Query: 203 LRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTGQIPPS-FGNLSNLRYLFLY 260
           L NL ++ L +N L   +PK + D LT+L  LDL YN L   +P   F  L+ L+ L LY
Sbjct: 132 LTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLY 189

Query: 261 QNKLTGSIPKSIL-GLKSLVSFDLSDN 286
           QN+L  S+P  +   L SL    L DN
Sbjct: 190 QNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 23/164 (14%)

Query: 397 SLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNF 456
              +  L+   ++   +     L  +  +  + +D+    G Q   + +++ L L GN  
Sbjct: 20  ETIKANLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQY--LPNVRYLALGGNKL 75

Query: 457 SGKLP--DSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLF---GDIPEEL 511
              +          L  L L+ N+        F +L+ L +L +  N+L      + ++L
Sbjct: 76  H-DISALKELT--NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132

Query: 512 SSCKKLVSLDLSNNQLSGHIPA----SLSEMPVLGQLDLSENQL 551
           +    L  L+L++NQL   +P      L+    L +LDLS NQL
Sbjct: 133 T---NLTYLNLAHNQLQS-LPKGVFDKLTN---LTELDLSYNQL 169

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 19/183 (10%)

Query: 376 KLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGR 435
           K  L   S+            S+ ++   N+ +          LP V +L + GN L   
Sbjct: 23  KANLKKKSVT-DAVTQNEL-NSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLH-D 77

Query: 436 IGEQKWEMTSLQMLNLAGNNFSGKLPDSF--GSDQLENLDLSENRFSGTIPRSFGRLSEL 493
           I   K E+T+L  L L GN     LP+        L+ L L EN+        F +L+ L
Sbjct: 78  ISALK-ELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135

Query: 494 MQLKISRNKLFGDIPEEL-SSCKKLVSLDLSNNQLSGHIPA----SLSEMPVLGQLDLSE 548
             L ++ N+L   +P+ +      L  LDLS NQL   +P      L++   L  L L +
Sbjct: 136 TYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQ---LKDLRLYQ 190

Query: 549 NQL 551
           NQL
Sbjct: 191 NQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 47/224 (20%), Positives = 78/224 (34%), Gaps = 54/224 (24%)

Query: 319 SLASMP-----KLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGK--IPETLCDS 371
                P     +     L     +  +  N  + N++  I  + + +     I       
Sbjct: 9   IKQIFPDDAFAETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQYL---- 62

Query: 372 GSLFKLILFSNSLEGKIP--NSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISG 429
            ++  L L  N L   I     L+   +L  + L  N+L    +  F +L          
Sbjct: 63  PNVRYLALGGNKLH-DISALKELT---NLTYLILTGNQLQSLPNGVFDKL---------- 108

Query: 430 NDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDS-FGS-DQLENLDLSENRFSGTIPRSF 487
                         T+L+ L L  N     LPD  F     L  L+L+ N+        F
Sbjct: 109 --------------TNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF 153

Query: 488 GRLSELMQLKISRNKLFGDIPE----ELSSCKKLVSLDLSNNQL 527
            +L+ L +L +S N+L   +PE    +L+   +L  L L  NQL
Sbjct: 154 DKLTNLTELDLSYNQL-QSLPEGVFDKLT---QLKDLRLYQNQL 193

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 82.0 bits (203), Expect = 1e-17
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 8/145 (5%)

Query: 195 SIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP-SFGNLSN 253
            IP  + +   +  I L  N +    P        L  +DL  N ++ ++ P +F  L +
Sbjct: 25  EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS 81

Query: 254 LRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSNN 311
           L  L LY NK+T  +PKS+  GL SL    L+ N ++  +  +  Q L NL +L L+ N 
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNK 139

Query: 312 FTGKIPSSLASMPKLQVLQLWSNQF 336
                  + + +  +Q + L  N F
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 36/175 (20%)

Query: 93  SSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIG---SLSRLEILDLSNNMLSGKIP 149
               L+ EIP+++  +   +R   L  N     +P G      +L  +DLSNN +S ++ 
Sbjct: 19  RGKGLT-EIPTNLPETITEIR---LEQNTIKV-IPPGAFSPYKKLRRIDLSNNQIS-ELA 72

Query: 150 EEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREI-GQLRNLKW 208
               +F GL                      SL    L  N++   +P+ +   L +L+ 
Sbjct: 73  P--DAFQGL---------------------RSLNSLVLYGNKI-TELPKSLFEGLFSLQL 108

Query: 209 IYLGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQN 262
           + L  N ++  +  +    L +LN L L  N L      +F  L  ++ + L QN
Sbjct: 109 LLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 67.8 bits (166), Expect = 9e-13
 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 6/129 (4%)

Query: 233 LDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYLSG 290
           + L  N +   IPP +F     LR + L  N+++  +      GL+SL S  L  N ++ 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 291 EIPEEVIQ-LQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNN 349
           E+P+ + + L +L++L L +N        +   +  L +L L+ N+              
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 350 LTVIDLSTN 358
           +  + L+ N
Sbjct: 154 IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 34/160 (21%)

Query: 61  THVNAIELSAKNISGKISSSIFH-LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSN 119
             +  I L    I   I    F     +  I+LS+NQ+S E+  D F    SL  L L  
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89

Query: 120 NNFTGPVPIG---SLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSI 176
           N  T  +P      L  L++L L+ N ++  +     +F  L                  
Sbjct: 90  NKITE-LPKSLFEGLFSLQLLLLNANKIN-CLRV--DAFQDL------------------ 127

Query: 177 SNITSLQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYNN 215
               +L + +L  N+L  +I +     LR ++ ++L   N
Sbjct: 128 ---HNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHL-AQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 444 TSLQMLNLAGNNFSGKLPDSF-GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNK 502
            ++  + L  N      P +F    +L  +DLS N+ S   P +F  L  L  L +  NK
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 503 LFGDIPEEL-SSCKKLVSLDLSNNQLSGHIPA-SLSEMPVLGQLDLSENQLSGKIPQTLG 560
           +  ++P+ L      L  L L+ N+++  +   +  ++  L  L L +N+L      T  
Sbjct: 92  I-TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 561 RVASLVQVNISHNHFH 576
            + ++  ++++ N F 
Sbjct: 150 PLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 29/164 (17%)

Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQ 447
           IP +L    ++  +RL+ N +       F+                            L+
Sbjct: 26  IPTNLPE--TITEIRLEQNTIKVIPPGAFSPY------------------------KKLR 59

Query: 448 MLNLAGNNFSGKLPDSF-GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGD 506
            ++L+ N  S   PD+F G   L +L L  N+ +      F  L  L  L ++ NK+   
Sbjct: 60  RIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI-NC 118

Query: 507 IPEEL-SSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSEN 549
           +  +       L  L L +N+L      + S +  +  + L++N
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 15/148 (10%)

Query: 319 SLASMPK-----LQVLQLWSNQFSGEIPSN-LGKQNNLTVIDLSTNFLTGKIPETLCDS- 371
            L  +P      +  ++L  N     IP         L  IDLS N ++ ++        
Sbjct: 22  GLTEIPTNLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGL 79

Query: 372 GSLFKLILFSN---SLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDIS 428
            SL  L+L+ N    L   +   L    SL+ + L  N+++      F  L  +  L + 
Sbjct: 80  RSLNSLVLYGNKITELPKSLFEGLF---SLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136

Query: 429 GNDLSGRIGEQKWEMTSLQMLNLAGNNF 456
            N L          + ++Q ++LA N F
Sbjct: 137 DNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 27/152 (17%)

Query: 376 KLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGR 435
           ++ L  N+++   P + S  K LRR+ L NN++S      F  L                
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL---------------- 79

Query: 436 IGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPR-SFGRLSEL 493
                    SL  L L GN  +      F     L+ L L+ N+ +  +   +F  L  L
Sbjct: 80  --------RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNL 130

Query: 494 MQLKISRNKLFGDIPEELSSCKKLVSLDLSNN 525
             L +  NKL        S  + + ++ L+ N
Sbjct: 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 28/117 (23%)

Query: 470 ENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSG 529
             + L +N      P +F                           KKL  +DLSNNQ+S 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPY------------------------KKLRRIDLSNNQIS- 69

Query: 530 HIPA-SLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAF 585
            +   +   +  L  L L  N+++         + SL  + ++ N  +  L    AF
Sbjct: 70  ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRV-DAF 124

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 83.3 bits (206), Expect = 1e-17
 Identities = 38/202 (18%), Positives = 54/202 (26%), Gaps = 42/202 (20%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN-LSWERRRKVAIGIAKALRFLHFHC 798
            P + R+  V  +     +V E+I G  L EV     S     +    +A A    H   
Sbjct: 90  KPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRA- 148

Query: 799 SPSVVAGDVSPGKVIV--DGKDEPHLRLSVPGLAYCTDSKSINSSAYVAPETKESKDITE 856
              V      P +V V  DG     + L+ P                +     +      
Sbjct: 149 --GVALSIDHPSRVRVSIDG----DVVLAYPA--------------TMPDANPQD----- 183

Query: 857 KGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ 916
             DI G G  L  LL  + P         S +  A                       I 
Sbjct: 184 --DIRGIGASLYALLVNRWPLPEA--GVRSGLAPAER-----DTAGQPIE-PADIDRDIP 233

Query: 917 NEIVEIMNLALHCTAGDPTARP 938
            +I     +A     GD   R 
Sbjct: 234 FQISA---VAARSVQGDGGIRS 252

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 82.7 bits (205), Expect = 3e-17
 Identities = 46/265 (17%), Positives = 94/265 (35%), Gaps = 52/265 (19%)

Query: 713 VKKII--DVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE 770
           VK +           +F  +V    K   H NI+   G   + +   +V ++ EG  L  
Sbjct: 51  VKMLNVTAPTPQQLQAFKNEVGVLRKT-RHVNILLFMGYSTAPQL-AIVTQWCEGSSLYH 108

Query: 771 VLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSV 826
            L         ++   +A   A+ + +LH   + S++  D+    + +   ++  +++  
Sbjct: 109 HLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLH--EDNTVKIGD 163

Query: 827 PGLA----YCTDSKSINSSA----YVAPE---TKESKDITEKGDIYGFGLILIDLLTGK- 874
            GLA      + S      +    ++APE    ++S   + + D+Y FG++L +L+TG+ 
Sbjct: 164 FGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQL 223

Query: 875 -----SPADADFGV--HESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLAL 927
                +  D    +    S+        S+C                    +  +M    
Sbjct: 224 PYSNINNRDQIIEMVGRGSLSPDLSKVRSNCP-----------------KRMKRLM---A 263

Query: 928 HCTAGDPTARPCASDVTKTLESCFR 952
            C       RP    +   +E   R
Sbjct: 264 ECLKKKRDERPSFPRILAEIEELAR 288

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 82.3 bits (204), Expect = 5e-17
 Identities = 45/210 (21%), Positives = 73/210 (34%), Gaps = 32/210 (15%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHF 796
            P++V +H     +   Y+    I G +L+ +LR    L+  R   +   I  AL   H 
Sbjct: 93  EPHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHA 152

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN-------SSAYVAPETK 849
                    DV P  ++V    +    L   G+A  T  + +        +  Y+APE  
Sbjct: 153 A---GATHRDVKPENILVS--ADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERF 207

Query: 850 ESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESI-VEWARYCYSDCHLDTWVDPFI 908
                T + DIY    +L + LTG  P   D      + V  A       H++  + P  
Sbjct: 208 SESHATYRADIYALTCVLYECLTGSPPYQGD-----QLSVMGA-------HINQAI-PRP 254

Query: 909 RGHVSSIQNEIVEIMNLALHCTAGDPTARP 938
                 I      ++       A +P  R 
Sbjct: 255 STVRPGIPVAFDAVI---ARGMAKNPEDRY 281

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 79.7 bits (197), Expect = 6e-17
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 9/146 (6%)

Query: 195 SIPREIGQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLTGQIPP-SFGNLS 252
            IP  I Q      + L  N  +      I   L  L  ++   N +T  I   +F   S
Sbjct: 25  KIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGAS 81

Query: 253 NLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSN 310
            +  + L  N+L  ++   +  GL+SL +  L  N ++  +  +    L ++ +L L+ N
Sbjct: 82  GVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDN 139

Query: 311 NFTGKIPSSLASMPKLQVLQLWSNQF 336
             T   P +  ++  L  L L +N F
Sbjct: 140 QITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 70.8 bits (174), Expect = 7e-14
 Identities = 38/181 (20%), Positives = 66/181 (36%), Gaps = 52/181 (28%)

Query: 85  PHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNML 144
            +   + L++N+ +    + IF     LR +N SNN  T                     
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT--------------------- 70

Query: 145 SGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREI-GQL 203
              I E  G+F G                      + +    L SN+L  ++  ++   L
Sbjct: 71  --DIEE--GAFEGA---------------------SGVNEILLTSNRLE-NVQHKMFKGL 104

Query: 204 RNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTGQIPP-SFGNLSNLRYLFLYQ 261
            +LK + L  N ++  +  +    L+S+  L L  N +T  + P +F  L +L  L L  
Sbjct: 105 ESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLA 162

Query: 262 N 262
           N
Sbjct: 163 N 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 34/181 (18%), Positives = 69/181 (38%), Gaps = 43/181 (23%)

Query: 50  CKWNGISCQN----------STHVNAIELSAKNISGKISSSIFH-LPHVESINLSSNQLS 98
           C+   + C N            +   + L+    +   ++ IF  LP +  IN S+N+++
Sbjct: 11  CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT 70

Query: 99  GEIPSDIFSSSNSLRFLNLSNNNFTGPVPIG---SLSRLEILDLSNNMLSGKIPEEIGSF 155
            +I    F  ++ +  + L++N     V       L  L+ L L +N ++  +     SF
Sbjct: 71  -DIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRIT-CVGN--DSF 125

Query: 156 SGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYN 214
            GL                     +S+++ +L  NQ+  ++       L +L  + L   
Sbjct: 126 IGL---------------------SSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNL-LA 162

Query: 215 N 215
           N
Sbjct: 163 N 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 17/148 (11%)

Query: 219 EIPKEIGDLTSLNHLDLVYNNLTGQIPPS--FGNLSNLRYLFLYQNKLTGSIPKSIL-GL 275
           +IP+ I        L L  N  T  +  +  F  L  LR +    NK+T  I +    G 
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGA 80

Query: 276 KSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSN 334
             +    L+ N L   +  ++ + L++L+ L L SN  T     S   +  +++L L+ N
Sbjct: 81  SGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139

Query: 335 QFSGEIP----SNLGKQNNLTVIDLSTN 358
           Q +  +       L     L+ ++L  N
Sbjct: 140 QIT-TVAPGAFDTLHS---LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 6/137 (4%)

Query: 444 TSLQMLNLAGNNFSGKLPDSF--GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRN 501
                L L  N F+            QL  ++ S N+ +     +F   S + ++ ++ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 502 KLFGDIPEEL-SSCKKLVSLDLSNNQLSGHIPA-SLSEMPVLGQLDLSENQLSGKIPQTL 559
           +L  ++  ++    + L +L L +N+++  +   S   +  +  L L +NQ++   P   
Sbjct: 92  RL-ENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149

Query: 560 GRVASLVQVNISHNHFH 576
             + SL  +N+  N F+
Sbjct: 150 DTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 33/167 (19%), Positives = 56/167 (33%), Gaps = 32/167 (19%)

Query: 339 EIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSG--SLFKLILFSNSLEGKIPNSLSTCK 396
           +IP ++ +      + L+ N  T  +  T        L K+   +N +      +     
Sbjct: 25  KIPEHIPQ--YTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS 81

Query: 397 SLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNF 456
            +  + L +NRL       F  L                         SL+ L L  N  
Sbjct: 82  GVNEILLTSNRLENVQHKMFKGL------------------------ESLKTLMLRSNRI 117

Query: 457 SGKLPDSF-GSDQLENLDLSENRFSGTIPR-SFGRLSELMQLKISRN 501
           +    DSF G   +  L L +N+ + T+   +F  L  L  L +  N
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 82.9 bits (204), Expect = 2e-16
 Identities = 46/236 (19%), Positives = 80/236 (33%), Gaps = 10/236 (4%)

Query: 331 LWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPN 390
           +           +      L   +LS    T  +   L     L +L   +      I  
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL 390

Query: 391 SLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLN 450
            +     L   +      S   + +  R   +  L    +         K E   +++L+
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR---SKFLLENSVLKMEYADVRVLH 447

Query: 451 LAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEE 510
           LA  + +  L        + +LDLS NR    +P +   L  L  L+ S N L  ++   
Sbjct: 448 LAHKDLT-VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG- 503

Query: 511 LSSCKKLVSLDLSNNQLSGH-IPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASL 565
           +++  +L  L L NN+L        L   P L  L+L  N L  +      R+A +
Sbjct: 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 75.2 bits (184), Expect = 5e-14
 Identities = 33/212 (15%), Positives = 68/212 (32%), Gaps = 15/212 (7%)

Query: 76  KISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLE 135
           +   S+     ++S   S  +L    P + +     +  +   +        +   S L+
Sbjct: 353 RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 412

Query: 136 ILDLSN--------NMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL 187
            +D           +    +       ++ ++VL L    L   +   +  +  +    L
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQLLLVTHLDL 470

Query: 188 ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG-QIPP 246
           + N+L  ++P  +  LR L+ +    N L   +   + +L  L  L L  N L       
Sbjct: 471 SHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQ 527

Query: 247 SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSL 278
              +   L  L L  N L          L  +
Sbjct: 528 PLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 74.0 bits (181), Expect = 1e-13
 Identities = 48/307 (15%), Positives = 97/307 (31%), Gaps = 17/307 (5%)

Query: 276 KSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQ 335
              V     +  LS      +     +  L L  +     +                 + 
Sbjct: 245 LCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDL 304

Query: 336 FSGEIPSNLGKQNNLTVIDLST-----NFLTGKIPETLCDSGSLFKLILFSNSLE--GKI 388
            +  +   L +     +   S        L  +      DS +  +L     S+E    +
Sbjct: 305 PAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVL 364

Query: 389 PNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIG-EQKWEMTSLQ 447
            + L +CK L+ +  +N      +      L  + +   +    S     +         
Sbjct: 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424

Query: 448 MLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDI 507
           + +      S    +      +  L L+      T+     +L  +  L +S N+L   +
Sbjct: 425 LRSKFLLENSVLKMEYA---DVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-AL 478

Query: 508 PEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSG-KIPQTLGRVASLV 566
           P  L++ + L  L  S+N L  ++   ++ +P L +L L  N+L      Q L     LV
Sbjct: 479 PPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536

Query: 567 QVNISHN 573
            +N+  N
Sbjct: 537 LLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 71.3 bits (174), Expect = 8e-13
 Identities = 41/251 (16%), Positives = 77/251 (30%), Gaps = 24/251 (9%)

Query: 189 SNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSF 248
                  I       +    +            ++      L   +L     T  +    
Sbjct: 314 PQHTFRVIWTGSDSQKECVLLKDRPECW----CRDSATDEQLFRCELSVEKST-VLQSEL 368

Query: 249 GNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHL- 307
            +   L+ L         +I   +  L  L+    +  Y S         L+ ++ +   
Sbjct: 369 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS--------TLKAVDPMRAA 420

Query: 308 ----FSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGK 363
                 + F  +          ++VL L     +  +  +L +   +T +DLS N L   
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-A 477

Query: 364 IPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSG-ELSSEFTRLPLV 422
           +P  L     L  L    N+LE  +   ++    L+ + L NNRL            P +
Sbjct: 478 LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 423 YFLDISGNDLS 433
             L++ GN L 
Sbjct: 536 VLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 71.3 bits (174), Expect = 8e-13
 Identities = 55/349 (15%), Positives = 109/349 (31%), Gaps = 23/349 (6%)

Query: 206 LKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLT 265
            +W+              +    +   +        G    +   + +   L +      
Sbjct: 232 HRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPD 291

Query: 266 GSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPK 325
           G    S + L  L +  L+D               + +   L  +        S A+  +
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDS-ATDEQ 350

Query: 326 LQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKI---PETLCDSGSLFKLILFSN 382
           L   +L   + S  + S L     L  ++    +    I      L       + + + +
Sbjct: 351 LFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 383 SLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWE 442
           +L+   P   +    LR   L  N +     ++         L ++  DL+     ++  
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR------VLHLAHKDLTVLCHLEQ-- 461

Query: 443 MTSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRN 501
           +  +  L+L+ N     LP +  +   LE L  S+N     +      L  L +L +  N
Sbjct: 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN 518

Query: 502 KLFGDIPE--ELSSCKKLVSLDLSNNQLS---GHIPASLSEMPVLGQLD 545
           +L         L SC +LV L+L  N L    G        +P +  + 
Sbjct: 519 RL-QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.6 bits (172), Expect = 1e-12
 Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 11/158 (6%)

Query: 35  DPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSS 94
           DP       D    F   N +       V  + L+ K+++  +   +  L  V  ++LS 
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSH 472

Query: 95  NQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSG-KIPEEIG 153
           N+L   +P  + ++   L  L  S+N       + +L RL+ L L NN L      + + 
Sbjct: 473 NRLR-ALPPAL-AALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLV 530

Query: 154 SFSGLKVLDLGGNVLVGEIPLSISNITSL-----QIFT 186
           S   L +L+L GN L  +       +  +      I T
Sbjct: 531 SCPRLVLLNLQGNSLC-QEEGIQERLAEMLPSVSSILT 567

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 45/277 (16%), Positives = 92/277 (33%), Gaps = 59/277 (21%)

Query: 713 VKKII--DVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE 770
           ++ I     N     +F  +V  + +   H N+V   G C S     ++    +G+ L  
Sbjct: 60  IRLIDIERDNEDQLKAFKREVMAYRQT-RHENVVLFMGACMSPPHLAIITSLCKGRTLYS 118

Query: 771 VLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-------- 818
           V+R+    L   + R++A  I K + +LH   +  ++  D+    V  D           
Sbjct: 119 VVRDAKIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYDNGKVVITDFGL 175

Query: 819 ---EPHLRLSVPGLAYCTDSKSINSSAYVAPE---------TKESKDITEKGDIYGFGLI 866
                 L+           +  +    ++APE          ++    ++  D++  G I
Sbjct: 176 FSISGVLQAGRREDKLRIQNGWL---CHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTI 232

Query: 867 LIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVD-----PFIRGHVSSIQNEIVE 921
             +L   + P           + W             +         +  +     EI +
Sbjct: 233 WYELHAREWPFK---TQPAEAIIWQ------------MGTGMKPNLSQIGMGK---EISD 274

Query: 922 IMNLALHCTAGDPTARPCASDVTKTLESCFRISSCVS 958
           I+   L C A +   RP  + +   LE   + +  +S
Sbjct: 275 IL---LFCWAFEQEERPTFTKLMDMLEKLPKRNRRLS 308

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 58/332 (17%), Positives = 105/332 (31%), Gaps = 62/332 (18%)

Query: 77  ISSSIFHLPHVESINLSSNQLSGE----IPSDIFSSSNSLRFLNLSNNNFTGPVPIG--- 129
           + + +     V+ I LS N +  E    + S+  +S   L     S+             
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWL-SENIASKKDLEIAEFSDIFTGRVKDEIPEA 82

Query: 130 ---------SLSRLEILDLSNNMLSGKIPEEIGSF----SGLKVLDLGGNVLVGEIPLSI 176
                       +L  + LS+N       E +  F    + L+ L L  N          
Sbjct: 83  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN---------- 132

Query: 177 SNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGE----IPKEIGDLTSLNH 232
             +       +A      ++ ++      L+ I  G N L         K       L+ 
Sbjct: 133 -GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191

Query: 233 LDLVYNNLTGQ-----IPPSFGNLSNLRYLFLYQNKLTG----SIPKSILGLKSLVSFDL 283
           + +V N +  +     +         L+ L L  N  T     ++  ++    +L    L
Sbjct: 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251

Query: 284 SDNYLSGE----IPEEVIQLQN--LEILHLFSNNFTGKIPSSLAS-----MPKLQVLQLW 332
           +D  LS      + +   +L+N  L+ L L  N        +L +     MP L  L+L 
Sbjct: 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311

Query: 333 SNQFS------GEIPSNLGKQNNLTVIDLSTN 358
            N+FS       EI      +    + +L   
Sbjct: 312 GNRFSEEDDVVDEIREVFSTRGRGELDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 76.7 bits (189), Expect = 8e-15
 Identities = 52/327 (15%), Positives = 102/327 (31%), Gaps = 64/327 (19%)

Query: 204 RNLKWIYLGYNNLSGE----IPKEIGDLTSLNHLDLVYNNLTGQ----IPPSFGNLSNLR 255
            +++   L  + ++ E    +   + +  S+  + L  N +  +    +  +  +  +L 
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 256 YLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGK 315
                         +    L+ L+              + +++   L  + L  N F   
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLL--------------QALLKCPKLHTVRLSDNAFGPT 109

Query: 316 ----IPSSLASMPKLQVLQLWSNQFSGE-------------IPSNLGKQNNLTVIDLSTN 358
               +   L+    L+ L L +N    +             +         L  I    N
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169

Query: 359 FLTGK----IPETLCDSGSLFKLILFSNSL-----EGKIPNSLSTCKSLRRVRLQNNRLS 409
            L         +T      L  + +  N +     E  +   L+ C+ L+ + LQ+N  +
Sbjct: 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

Query: 410 GE----LSSEFTRLPLVYFLDISGNDLSGR----IGE--QKWEMTSLQMLNLAGNNFSGK 459
                 L+      P +  L ++   LS R    + +   K E   LQ L L  N     
Sbjct: 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289

Query: 460 ----LPDSFGS--DQLENLDLSENRFS 480
               L          L  L+L+ NRFS
Sbjct: 290 AVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 73.6 bits (181), Expect = 7e-14
 Identities = 56/367 (15%), Positives = 114/367 (31%), Gaps = 69/367 (18%)

Query: 111 SLRFLNLSNNNFT--GPVPIGSL----SRLEILDLSNNMLSGK----IPEEIGSFSGLKV 160
           S+   +L  +  T      + ++      ++ + LS N +  +    + E I S   L++
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 161 LDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEI 220
            +                   ++     + +L+      + +   L  + L  N      
Sbjct: 65  AEFSDI-----------FTGRVKDEIPEALRLLLQ---ALLKCPKLHTVRLSDNAFGPTA 110

Query: 221 PKEIGDL----TSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLK 276
            + + D     T L HL L  N L    P +   ++      L +     ++ K      
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLG---PQAGAKIARA----LQEL----AVNKKAKNAP 159

Query: 277 SLVSFDLSDNYLSGE----IPEEVIQLQNLEILHLFSNNFTGK-----IPSSLASMPKLQ 327
            L S     N L         +     + L  + +  N    +     +   LA   +L+
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219

Query: 328 VLQLWSNQFSGE----IPSNLGKQNNLTVIDLSTNFLTGK----IPETL--CDSGSLFKL 377
           VL L  N F+      +   L    NL  + L+   L+ +    + +     ++  L  L
Sbjct: 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279

Query: 378 ILFSNSLEGK----IPNSLST-CKSLRRVRLQNNRLS------GELSSEFTRLPLVYFLD 426
            L  N +E      +   +      L  + L  NR S       E+   F+        +
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339

Query: 427 ISGNDLS 433
           +   +  
Sbjct: 340 LDDMEEL 346

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 73.2 bits (180), Expect = 8e-14
 Identities = 53/327 (16%), Positives = 101/327 (30%), Gaps = 70/327 (21%)

Query: 302 LEILHLFSNNFTGK----IPSSLASMPKLQVLQLWSNQFSGE----IPSNLGKQNNLTVI 353
           +E   L  +  T +    + + L     ++ + L  N    E    +  N+  + +L + 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 354 DLSTNFLTGKIPET----------LCDSGSLFKLILFSNSLEGK----IPNSLSTCKSLR 399
           + S  F      E           L     L  + L  N+        + + LS    L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 400 RVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSG-----RIGEQKWEMTSLQMLNLAGN 454
            + L NN L                   +G  ++       + ++      L+ +    N
Sbjct: 126 HLYLHNNGLG----------------PQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169

Query: 455 NFSGK----LPDSFGSDQ-LENLDLSENRF-----SGTIPRSFGRLSELMQLKISRNKLF 504
                       +F S + L  + + +N          +        EL  L +  N  F
Sbjct: 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-F 228

Query: 505 GD-----IPEELSSCKKLVSLDLSNNQLSG----HIPASLSEM--PVLGQLDLSENQLSG 553
                  +   L S   L  L L++  LS      +  + S++    L  L L  N++  
Sbjct: 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288

Query: 554 KIPQTLGRV-----ASLVQVNISHNHF 575
              +TL  V       L+ + ++ N F
Sbjct: 289 DAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 61/366 (16%), Positives = 109/366 (29%), Gaps = 83/366 (22%)

Query: 249 GNLSNLRYLFLYQNKLTG----SIPKSILGLKSLVSFDLSDNYLSGE----IPEEVIQLQ 300
              S +    L  + +T     S+   +L   S+    LS N +  E    + E +   +
Sbjct: 2   ARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 301 NLEILHLFSNNFTGKIP-----------SSLASMPKLQVLQLWSNQFSGE----IPSNLG 345
           +LEI    S+ FTG++             +L   PKL  ++L  N F       +   L 
Sbjct: 61  DLEIAEF-SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 346 KQNNLTVIDLSTNFLT-------------GKIPETLCDSGSLFKLILFSNSLEGK----I 388
           K   L  + L  N L                + +   ++  L  +I   N LE       
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 389 PNSLSTCKSLRRVRLQNNRLSGE-----LSSEFTRLPLVYFLDISGNDLSGR----IGEQ 439
             +  + + L  V++  N +  E     L         +  LD+  N  +      +   
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239

Query: 440 KWEMTSLQMLNLAGNNFS-------GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSE 492
                +L+ L L     S               +  L+ L L  N        +   L  
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE---LDAVRTLKT 296

Query: 493 LMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLS------GHIPASLSEMPVLGQLDL 546
           ++                      L+ L+L+ N+ S        I    S        +L
Sbjct: 297 VID----------------EKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340

Query: 547 SENQLS 552
            + +  
Sbjct: 341 DDMEEL 346

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 79.2 bits (196), Expect = 4e-16
 Identities = 45/218 (20%), Positives = 86/218 (39%), Gaps = 41/218 (18%)

Query: 740 HPNIVRLHGV----CRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALR 792
           HP IV ++        +    Y+V EY++G  L +++     ++ +R  +V     +AL 
Sbjct: 71  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALN 130

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLAYCTDSKS---------INSS 841
           F H +    ++  DV P  +++         + V   G+A                I ++
Sbjct: 131 FSHQN---GIIHRDVKPANIMIS----ATNAVKVMDFGIARAIADSGNSVTQTAAVIGTA 183

Query: 842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLD 901
            Y++PE      +  + D+Y  G +L ++LTG+ P   D  V  S+       Y   H+ 
Sbjct: 184 QYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPV--SVA------YQ--HVR 233

Query: 902 TWVDPFIRGHVSSIQNEI-VEIMNLALHCTAGDPTARP 938
               P      S+    +  ++  + L   A +P  R 
Sbjct: 234 EDPIP-----PSARHEGLSADLDAVVLKALAKNPENRY 266

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 50/165 (30%), Positives = 69/165 (41%), Gaps = 9/165 (5%)

Query: 177 SNI-TSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLD 234
           S I    +   L S  L          L  L W+ L YN L   +   + D LT L  L 
Sbjct: 31  SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLG 89

Query: 235 LVYNNLTGQIPPS-FGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYLSGEI 292
           L  N L   +P   F +L+ L  L+L  N+L  S+P  +   L  L    L+ N L   I
Sbjct: 90  LANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SI 146

Query: 293 PEEVI-QLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQF 336
           P     +L NL+ L L +N        +   + KLQ + L+ NQF
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 76.7 bits (189), Expect = 1e-15
 Identities = 51/180 (28%), Positives = 70/180 (38%), Gaps = 33/180 (18%)

Query: 88  ESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIG---SLSRLEILDLSNNML 144
           E ++L S  L+  +    F     L +LNL  N     +  G    L+ L  L L+NN L
Sbjct: 38  EKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQL 95

Query: 145 SGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREI-GQL 203
           +  +P   G F  L                     T L    L  NQL  S+P  +  +L
Sbjct: 96  A-SLPL--GVFDHL---------------------TQLDKLYLGGNQL-KSLPSGVFDRL 130

Query: 204 RNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQN 262
             LK + L  N L   IP    D LT+L  L L  N L      +F  L  L+ + L+ N
Sbjct: 131 TKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 12/168 (7%)

Query: 220 IPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSL 278
           +P  I        LDL    L      +F  L+ L +L L  N+L  ++   +   L  L
Sbjct: 29  VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTEL 85

Query: 279 VSFDLSDNYLSGEIPEEV-IQLQNLEILHLFSNNFTGKIPSSL-ASMPKLQVLQLWSNQF 336
            +  L++N L+  +P  V   L  L+ L+L  N     +PS +   + KL+ L+L +NQ 
Sbjct: 86  GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL 143

Query: 337 SGEIPSNL-GKQNNLTVIDLSTNFLTGKIPETLCDS-GSLFKLILFSN 382
              IP+    K  NL  + LSTN L   +P    D  G L  + LF N
Sbjct: 144 Q-SIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 5/155 (3%)

Query: 399 RRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSG 458
            ++ LQ+  L+    + F  L  + +L++  N L         ++T L  L LA N  + 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 459 KLPDS-FGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEEL-SSCK 515
            LP   F    QL+ L L  N+        F RL++L +L+++ N+L   IP        
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLT 155

Query: 516 KLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQ 550
            L +L LS NQL      +   +  L  + L  NQ
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 8/119 (6%)

Query: 470 ENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEEL-SSCKKLVSLDLSNNQLS 528
           E LDL     +     +F  L++L  L +  N+L   +   +     +L +L L+NNQL+
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA 96

Query: 529 GHIPASLSEMPV-LGQLDLSENQLSGKIPQTL-GRVASLVQVNISHNHFHGSLPSTGAF 585
             +P  + +    L +L L  NQL   +P  +  R+  L ++ ++ N    S+P  GAF
Sbjct: 97  S-LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIP-AGAF 151

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 80.7 bits (199), Expect = 1e-15
 Identities = 48/224 (21%), Positives = 76/224 (33%), Gaps = 44/224 (19%)

Query: 740 HPNIVRL-----HGVCRSEKAAYLVYEYIEGKELSEVLRN-LSWERRRKVAIGIAKALRF 793
           HP+IV++     H     +   Y+V EY+ G+ L       L         + I  AL +
Sbjct: 138 HPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSY 197

Query: 794 LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--INSSAYVAPETKES 851
           LH   S  +V  D+ P  +++    E  L+L   G     +S      +  + APE   +
Sbjct: 198 LH---SIGLVYNDLKPENIML---TEEQLKLIDLGAVSRINSFGYLYGTPGFQAPEIVRT 251

Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADADF--GVHESIVEWARYCYSDCHLDTWVDPFIR 909
              T   DIY  G  L  L       +  +  G+ E                   DP ++
Sbjct: 252 G-PTVATDIYTVGRTLAALTLDLPTRNGRYVDGLPED------------------DPVLK 292

Query: 910 GHVSSIQNEIVEIMNLALHCTAGDPTARP-CASDVTKTLESCFR 952
            + S           L       DP  R   A +++  L    R
Sbjct: 293 TYDS------YG--RLLRRAIDPDPRQRFTTAEEMSAQLTGVLR 328

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 77.3 bits (191), Expect = 2e-15
 Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 12/152 (7%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALR 792
             + HPNI+R++      K  YL+ E+    EL + L+       +R       +A AL 
Sbjct: 69  SHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALH 128

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS----AYVAPET 848
           + H      V+  D+ P  +++  K    L+++  G +    S    +      Y+ PE 
Sbjct: 129 YCHER---KVIHRDIKPENLLMGYKG--ELKIADFGWSVHAPSLRRRTMCGTLDYLPPEM 183

Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
            E K   EK D++  G++  + L G  P D+ 
Sbjct: 184 IEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSP 215

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 12/152 (7%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALR 792
             + HPNI+RL+G        YL+ EY     +   L+       +R       +A AL 
Sbjct: 64  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALS 123

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS----AYVAPET 848
           + H      V+  D+ P  +++       L+++  G +    S           Y+ PE 
Sbjct: 124 YCHSK---RVIHRDIKPENLLLGSAG--ELKIADFGWSVHAPSSRRTDLCGTLDYLPPEM 178

Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
            E +   EK D++  G++  + L GK P +A+
Sbjct: 179 IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN 210

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 73.1 bits (179), Expect = 8e-14
 Identities = 23/179 (12%), Positives = 50/179 (27%), Gaps = 28/179 (15%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL--------RNLSWERRRKVAIGI 787
           K  M    ++ +     +  + LV E      L   +        + +        A+ +
Sbjct: 122 KPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRM 181

Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIV---------DGKDEPHLRLSVPGLAYCTD---- 834
              +  +H      ++ GD+ P   I+         +      L L   G +        
Sbjct: 182 LYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPK 238

Query: 835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVE 889
               +    +S +   E   +K    + D +G    +  +L G      + G       
Sbjct: 239 GTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECKPEG 297

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 14/154 (9%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALR 792
           + + H ++V  HG        ++V E    + L E+ +    L+    R     I    +
Sbjct: 70  RSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQ 129

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN------SSAYVAP 846
           +LH +    V+  D+  G + ++   E  +++   GLA   +           +  Y+AP
Sbjct: 130 YLHRNR---VIHRDLKLGNLFLNEDLE--VKIGDFGLATKVEYDGERKKVLCGTPNYIAP 184

Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           E    K  + + D++  G I+  LL GK P +  
Sbjct: 185 EVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS 218

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 70.3 bits (173), Expect = 3e-13
 Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 15/155 (9%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKAL 791
             + HP+I+ L+         YLV E     E++  L+N     S    R     I   +
Sbjct: 66  CQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGM 125

Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN------SSAYVA 845
            +LH H    ++  D++   +++       ++++  GLA               +  Y++
Sbjct: 126 LYLHSHG---ILHRDLTLSNLLLTRNMN--IKIADFGLATQLKMPHEKHYTLCGTPNYIS 180

Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           PE         + D++  G +   LL G+ P D D
Sbjct: 181 PEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTD 215

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 71.3 bits (174), Expect = 3e-13
 Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 189 SNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKE-IGDLTSLNHLDLVYNNLTGQIPP- 246
           +          +    NL  +Y+        +    +  L  L +L +V + L   + P 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 247 SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYL 288
           +F     L  L L  N L  S+    +   SL    LS N L
Sbjct: 75  AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 67.1 bits (163), Expect = 7e-12
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 4/102 (3%)

Query: 214 NNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSI 272
            + + +    +    +L  L +        +       L  LR L + ++ L   +    
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDA 75

Query: 273 L-GLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFT 313
                 L   +LS N L   +  + +Q  +L+ L L  N   
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.4 bits (143), Expect = 2e-09
 Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 9/117 (7%)

Query: 56  SCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFL 115
               S+ +      A +        +    ++  + + + Q    +          LR L
Sbjct: 6   CPHGSSGLRCTRDGALDSL----HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 116 NLSNNNFTGPVPIGS---LSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLV 169
            +  +     V   +     RL  L+LS N L   +  +      L+ L L GN L 
Sbjct: 62  TIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 461 PDSF-GSDQLENLDLSENRFSGTIPR-SFGRLSELMQLKISRNKLFGDIPEE-LSSCKKL 517
                G++ L  L +   +    +       L EL  L I ++ L   +  +      +L
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPRL 82

Query: 518 VSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQL 551
             L+LS N L   +     +   L +L LS N L
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 2/101 (1%)

Query: 262 NKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQ-LQNLEILHLFSNNFTGKIPSSL 320
                     + G ++L    + +      +    ++ L  L  L +  +      P + 
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 321 ASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLT 361
              P+L  L L  N     +     +  +L  + LS N L 
Sbjct: 77  HFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 7e-06
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 501 NKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPA-SLSEMPVLGQLDLSENQLSGKIPQTL 559
                D    L   + L  L + N Q   H+    L  +  L  L + ++ L    P   
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 560 GRVASLVQVNISHNHFHGSLP 580
                L ++N+S N    SL 
Sbjct: 77  HFTPRLSRLNLSFNALE-SLS 96

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 8e-06
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 443 MTSLQMLNLAGNNFSGKLPD-SFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISR 500
             +L  L +        L         +L NL + ++      P +F     L +L +S 
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 501 NKLFGDIPEELSSCKKLVSLDLSNNQL 527
           N L   +  +      L  L LS N L
Sbjct: 90  NALES-LSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 339 EIPSNLGKQNNLTVIDLSTNFLTGKIP-ETLCDSGSLFKLILFSNSLEGKIPNSLSTCKS 397
           +   +L    NLT + +        +    L   G L  L +  + L    P++      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 398 LRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDL 432
           L R+ L  N L          L L   L +SGN L
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQE-LVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 2/94 (2%)

Query: 364 IPETLCDSGSLFKLILFSNSLEGKIPN-SLSTCKSLRRVRLQNNRLSGELSSEFTRLPLV 422
               L  + +L +L + +      +    L     LR + +  + L       F   P +
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 423 YFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNF 456
             L++S N L   +  +  +  SLQ L L+GN  
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 63/341 (18%), Positives = 110/341 (32%), Gaps = 57/341 (16%)

Query: 77  ISSSIFHLPHVESINLSSNQLSGEIPSDIF----SSSNSLRFLNLSNNNFT--GPVPIGS 130
           +         V S++LS N L      ++     ++  S+  LNLS N+        +  
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 131 L-----SRLEILDLSNNMLSGKIPEEIGSF-----SGLKVLDLGGNVL--VGEIPLS--- 175
           +     + +  L+LS N LS K  +E+          + VLDLG N              
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 176 ISNITSLQIFTLASNQLIGSIPREIGQL-----RNLKWIYLGYNNLSGEIPKEIGDL--- 227
            +   S+    L  N L      E+ Q+      N+  + L  NNL+ +   E+      
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 228 --TSLNHLDLVYNNLTGQIPPSFG-----NLSNLRYLFLYQNKLTGS----IPKSILGLK 276
              S+  LDL  N L  +             +++  L L  N L G     +      LK
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253

Query: 277 SLVSFDLSDNYLSGEIPEEVIQL-------QNLEILHLFSNNFTGKIPSSLASM-----P 324
            L +  L  + +     E+   L       Q + ++              ++++      
Sbjct: 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSG 313

Query: 325 KLQVLQLWSN-----QFSGEIPSNLGKQNNLTVIDLSTNFL 360
           K  V  L +      Q       +L   + L     +   L
Sbjct: 314 KADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 60/359 (16%), Positives = 111/359 (30%), Gaps = 72/359 (20%)

Query: 103 SDIFSSSNSLRFLNLSNNNFT--GPVPIGSL-----SRLEILDLSNNMLSGKIPEEIGSF 155
            +  S  + +  L+LS NN      V +        + +  L+LS N L  K  +E+   
Sbjct: 15  EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI 74

Query: 156 -----SGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIY 210
                + +  L+L GN L  +    +          LA+                +  + 
Sbjct: 75  LAAIPANVTSLNLSGNFLSYKSSDELVKT-------LAAIP------------FTITVLD 115

Query: 211 LGYNNLSGEIPKEIGDL-----TSLNHLDLVYNNLTGQIPPSFGNL-----SNLRYLFLY 260
           LG+N+ S +   E          S+  L+L  N+L  +       +     +N+  L L 
Sbjct: 116 LGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175

Query: 261 QNKLTGSIPKSILGL-----KSLVSFDLSDNYLSGEIPEEVIQL-----QNLEILHLFSN 310
            N L       +         S+ S DLS N L  +   E+  +      ++  L+L  N
Sbjct: 176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235

Query: 311 NFTGK----IPSSLASMPKLQVLQLWSNQFSG-------EIPSNLGKQNNLTVIDLSTNF 359
              G     +     S+  LQ + L  +            + +       + ++D +   
Sbjct: 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295

Query: 360 LTGKIPETLCDS-----GSLFKLILFSNSL-----EGKIPNSLSTCKSLRRVRLQNNRL 408
           +       + +      G      L +  L            L+    LR        L
Sbjct: 296 IHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 62/338 (18%), Positives = 110/338 (32%), Gaps = 57/338 (16%)

Query: 250 NLSNLRYLFLYQNKLTGSIPKSIL-GLK----SLVSFDLSDNYLSGEIPEEVIQL----- 299
               +  L L  N L       ++        S+ S +LS N L  +  +E++Q+     
Sbjct: 20  IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 300 QNLEILHLFSNNFTGKIPSSLASMPK-----LQVLQLWSNQFSGE----IPSNLGKQN-N 349
            N+  L+L  N  + K    L          + VL L  N FS +              +
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 350 LTVIDLSTNFLTGKIPETLCDS-----GSLFKLILFSNSLEGK----IPNSL-STCKSLR 399
           +T ++L  N L  K  + L         ++  L L  N+L  K    +   L S   S+ 
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199

Query: 400 RVRLQNNRLSGE----LSSEFTRLP-LVYFLDISGNDLSG----RIGEQKWEMTSLQMLN 450
            + L  N L  +    L+  F+ +P  V  L++  N L G     +   K  +  LQ + 
Sbjct: 200 SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259

Query: 451 LAGNNFSGKLPDSFGS--------DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNK 502
           L  +       +   +         ++  +D +      +       L   +  K     
Sbjct: 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPS 319

Query: 503 LFG----------DIPEELSSCKKLVSLDLSNNQLSGH 530
           L               E+L+   +L     +   L  H
Sbjct: 320 LLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLEH 357

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 52/317 (16%), Positives = 99/317 (31%), Gaps = 61/317 (19%)

Query: 300 QNLEILHLFSNNFTGKIPSSLASM-----PKLQVLQLWSNQFSGE----IPSNLGKQN-N 349
             +  L L  NN        L          +  L L  N    +    +   L     N
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 350 LTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLS 409
           +T ++LS NFL+                     +L        +   ++  + L  N  S
Sbjct: 82  VTSLNLSGNFLS--------YKS----SDELVKTLA-------AIPFTITVLDLGWNDFS 122

Query: 410 GE----LSSEFTRLPL-VYFLDISGNDLSGRIGEQ-----KWEMTSLQMLNLAGNNFSGK 459
            +        F+ LP  +  L++ GNDL  +  ++          ++  LNL GNN + K
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182

Query: 460 ----LPDSFGSD--QLENLDLSENRFSGTIPRSFGRL-----SELMQLKISRNKLFGD-- 506
               L     S    + +LDLS N            +     + ++ L +  N L G   
Sbjct: 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242

Query: 507 --IPEELSSCKKLVSLDLSNNQLSG-------HIPASLSEMPVLGQLDLSENQLSGKIPQ 557
             +     S K L ++ L  + +          + A+   +  +  +D +  ++      
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302

Query: 558 TLGRVASLVQVNISHNH 574
            +  +   +        
Sbjct: 303 PISNLIRELSGKADVPS 319

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 70.4 bits (173), Expect = 4e-13
 Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 14/154 (9%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALR 792
           + + H ++V  HG        ++V E    + L E+ +    L+    R     I    +
Sbjct: 96  RSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQ 155

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN------SSAYVAP 846
           +LH +    V+  D+  G + ++   E  +++   GLA   +           +  Y+AP
Sbjct: 156 YLHRNR---VIHRDLKLGNLFLNEDLE--VKIGDFGLATKVEYDGERKKVLCGTPNYIAP 210

Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           E    K  + + D++  G I+  LL GK P +  
Sbjct: 211 EVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS 244

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 70.5 bits (173), Expect = 6e-13
 Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN-----------LSWERRRKVA 784
             I +   +   G+  +    Y++YEY+E   + +               +  +  + + 
Sbjct: 98  TDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCII 157

Query: 785 IGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS--- 841
             +  +  ++H     ++   DV P  +++D      ++LS  G +     K I  S   
Sbjct: 158 KSVLNSFSYIHNEK--NICHRDVKPSNILMDKNG--RVKLSDFGESEYMVDKKIKGSRGT 213

Query: 842 -AYVAPETKESKDIT--EKGDIYGFGLILIDLLTGKSPADADFGVHE 885
             ++ PE   ++      K DI+  G+ L  +     P      + E
Sbjct: 214 YEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVE 260

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 70.2 bits (172), Expect = 1e-12
 Identities = 36/227 (15%), Positives = 67/227 (29%), Gaps = 37/227 (16%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKAL 791
           +   HPN++R     +  +  Y+  E      L E +              +       L
Sbjct: 73  ESDEHPNVIRYFCTEKDRQFQYIAIELCAA-TLQEYVEQKDFAHLGLEPITLLQQTTSGL 131

Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDE---PHLRLSVPGLA---------YCTDSKSIN 839
             LH     ++V  D+ P  +++   +        +S  GL          +   S    
Sbjct: 132 AHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPG 188

Query: 840 SSAYVAPE---TKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYS 896
           +  ++APE       ++ T   DI+  G +   +++  S         ++ +        
Sbjct: 189 TEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILLGACSLD 248

Query: 897 DCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
             H +   D                   L     A DP  RP A  V
Sbjct: 249 CLHPEKHEDV--------------IARELIEKMIAMDPQKRPSAKHV 281

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 46/223 (20%), Positives = 77/223 (34%), Gaps = 47/223 (21%)

Query: 740 HPNIVRLHG----VCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALR 792
           HPNIVR +       + +K   LV E +    L   L+    +  +  R     I K L+
Sbjct: 84  HPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQ 143

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA----YVAPET 848
           FLH   +P ++  D+    + + G     +++   GLA    +    +      ++APE 
Sbjct: 144 FLH-TRTPPIIHRDLKCDNIFITGPTG-SVKIGDLGLATLKRASFAKAVIGTPEFMAPEM 201

Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCH--------- 899
            E K   E  D+Y FG+ ++++ T + P                  YS+C          
Sbjct: 202 YEEKY-DESVDVYAFGMCMLEMATSEYP------------------YSECQNAAQIYRRV 242

Query: 900 LDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASD 942
                             EI+E       C   +   R    D
Sbjct: 243 TSGVKPASFDKVAIPEVKEIIE------GCIRQNKDERYSIKD 279

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 69.1 bits (169), Expect = 4e-12
 Identities = 38/175 (21%), Positives = 71/175 (40%), Gaps = 19/175 (10%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK---- 789
            M    HP +V LH     +    ++YE++ G EL E + +   +     A+   +    
Sbjct: 207 TMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCK 266

Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA----YV 844
            L  +H +   + V  D+ P  ++   K    L+L   GL  +    +S+  +     + 
Sbjct: 267 GLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFA 323

Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSD 897
           APE  E K +    D++  G++   LL+G SP   + D     ++     +   D
Sbjct: 324 APEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKS-CDWNMDD 377

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 195 SIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP-SFGNLSN 253
            +P+ I   R++  +YL  N  +  +PKE+ +   L  +DL  N ++  +   SF N++ 
Sbjct: 24  VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQ 79

Query: 254 LRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVI-QLQNLEILHLFSN 310
           L  L L  N+L   IP     GLKSL    L  N +S  +PE     L  L  L + +N
Sbjct: 80  LLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 17/127 (13%)

Query: 177 SNI-TSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLD 234
             I   +    L  NQ    +P+E+   ++L  I L  N +S  +  +    +T L  L 
Sbjct: 27  KGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLI 84

Query: 235 LVYNNLTGQIPP-SFGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDN------ 286
           L YN L   IPP +F  L +LR L L+ N ++  +P+     L +L    +  N      
Sbjct: 85  LSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYCDC 142

Query: 287 ---YLSG 290
              +LS 
Sbjct: 143 NMQWLSD 149

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 33/143 (23%)

Query: 100 EIPSDIFSSSNSLRFLNLSNNNFTG-PVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGL 158
            +P  I      L    L  N FT  P  + +   L ++DLSNN +S  +     SFS +
Sbjct: 24  VLPKGIPRDVTELY---LDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSN--QSFSNM 77

Query: 159 KVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLS 217
                                T L    L+ N+L   IP      L++L+ + L  N++S
Sbjct: 78  ---------------------TQLLTLILSYNRL-RCIPPRTFDGLKSLRLLSLHGNDIS 115

Query: 218 GEIPKEIGD-LTSLNHLDLVYNN 239
             +P+   + L++L+HL +   N
Sbjct: 116 -VVPEGAFNDLSALSHLAI-GAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 11/90 (12%)

Query: 83  HLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIG---SLSRLEILDL 139
           +  H+  I+LS+N++S  + +  FS+   L  L LS N     +P      L  L +L L
Sbjct: 52  NYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSLRLLSL 109

Query: 140 SNNMLSGKIPEEIGSFSGLKVLD---LGGN 166
             N +S  +PE  G+F+ L  L    +G N
Sbjct: 110 HGNDIS-VVPE--GAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 29/133 (21%)

Query: 252 SNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNN 311
            ++  L+L  N+ T  +PK +   K L   DLS+N           ++  L         
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNN-----------RISTLS-------- 70

Query: 312 FTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNL-GKQNNLTVIDLSTNFLTGKIPETLCD 370
                  S ++M +L  L L  N+    IP        +L ++ L  N ++  +PE   +
Sbjct: 71  -----NQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFN 123

Query: 371 S-GSLFKLILFSN 382
              +L  L + +N
Sbjct: 124 DLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 444 TSLQMLNLAGNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNK 502
             +  L L GN F+  +P    +   L  +DLS NR S    +SF  +++L+ L +S N+
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89

Query: 503 LFGDIPEEL-SSCKKLVSLDLSNNQLS 528
           L   IP       K L  L L  N +S
Sbjct: 90  L-RCIPPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 11/88 (12%)

Query: 470 ENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEEL-SSCKKLVSLDLSNNQLS 528
             L L  N+F+  +P+       L  + +S N++   +  +  S+  +L++L LS N+L 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRLR 91

Query: 529 GHIPA----SLSEMPVLGQLDLSENQLS 552
             IP      L     L  L L  N +S
Sbjct: 92  C-IPPRTFDGLKS---LRLLSLHGNDIS 115

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 65.1 bits (159), Expect = 7e-12
 Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSI-SNITSLQI 184
           VP G  +  +IL L +N ++   P    S   LK L LG N L   +P+ +  ++T L +
Sbjct: 34  VPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTV 92

Query: 185 FTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQ 243
             L +NQL   +P  +  +L +LK +++  N L+ E+P+ I  LT L HL L  N L   
Sbjct: 93  LDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI 150

Query: 244 IPPSFGNLSNLRYLFLYQN 262
              +F  LS+L + +L+ N
Sbjct: 151 PHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 33/156 (21%)

Query: 88  ESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIG---SLSRLEILDLSNNML 144
           + + L  NQ++ ++   +F S  +L+ L L +N     +P+G   SL++L +LDL  N L
Sbjct: 43  QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQL 100

Query: 145 SGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLR 204
           +  +P     F  L                       L+   +  N+L   +PR I +L 
Sbjct: 101 T-VLPS--AVFDRL---------------------VHLKELFMCCNKL-TELPRGIERLT 135

Query: 205 NLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLVYNN 239
           +L  + L  N L   IP    D L+SL H  L + N
Sbjct: 136 HLTHLALDQNQLKS-IPHGAFDRLSSLTHAYL-FGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 29/157 (18%)

Query: 228 TSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNY 287
           T+   L L  N +T   P  F +L NL+ L+L  N+L  ++P  +        FD     
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGV--------FD----- 85

Query: 288 LSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSL-ASMPKLQVLQLWSNQFSGEIPSNLGK 346
                      L  L +L L +N  T  +PS++   +  L+ L +  N+ + E+P  + +
Sbjct: 86  ----------SLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER 133

Query: 347 QNNLTVIDLSTNFLTGKIPETLCDS-GSLFKLILFSN 382
             +LT + L  N L   IP    D   SL    LF N
Sbjct: 134 LTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 17/123 (13%)

Query: 470 ENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLF---GDIPEELSSCKKLVSLDLSNNQ 526
           + L L +N+ +   P  F  L  L +L +  N+L      + + L    +L  LDL  NQ
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL---TQLTVLDLGTNQ 99

Query: 527 LSGHIPA----SLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST 582
           L+  +P+     L     L +L +  N+L+ ++P+ + R+  L  + +  N    S+P  
Sbjct: 100 LTV-LPSAVFDRLVH---LKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPH- 152

Query: 583 GAF 585
           GAF
Sbjct: 153 GAF 155

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 20/138 (14%)

Query: 399 RRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWE------MTSLQMLNLA 452
           + + L +N+++      F  L  +  L +  N L                +T L +L+L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL------GALPVGVFDSLTQLTVLDLG 96

Query: 453 GNNFSGKLP----DSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIP 508
            N  +  LP    D      L+ L +  N+ +  +PR   RL+ L  L + +N+L     
Sbjct: 97  TNQLT-VLPSAVFDRLV--HLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152

Query: 509 EELSSCKKLVSLDLSNNQ 526
                   L    L  N 
Sbjct: 153 GAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 8/107 (7%)

Query: 425 LDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLP----DSFGSDQLENLDLSENRFS 480
           L +  N ++         + +L+ L L  N     LP    DS    QL  LDL  N+ +
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLT--QLTVLDLGTNQLT 101

Query: 481 GTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQL 527
                 F RL  L +L +  NKL  ++P  +     L  L L  NQL
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQL 147

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 35/181 (19%), Positives = 75/181 (41%), Gaps = 22/181 (12%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSW-ERRRKVAIG-IAK 789
           IM    HP ++ LH     +    L+ E++ G EL +     +    E      +    +
Sbjct: 101 IMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACE 160

Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA----YV 844
            L+ +H H   S+V  D+ P  ++ + K    +++   GLA      + +  +     + 
Sbjct: 161 GLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFA 217

Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDT 902
           APE  + + +    D++  G++   LL+G SP   + D    +++     + + +   D 
Sbjct: 218 APEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKR-CDWEFDE---DA 273

Query: 903 W 903
           +
Sbjct: 274 F 274

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 65.7 bits (161), Expect = 1e-11
 Identities = 44/231 (19%), Positives = 84/231 (36%), Gaps = 28/231 (12%)

Query: 691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGK--LIM----HPNIV 744
            G+  +    K R  +  +++  K  I       S       +  +   I+    H N++
Sbjct: 22  SGQFAIV--KKCREKSTGLEYAAK-FIKKRQSRASRRGVSREEIEREVSILRQVLHHNVI 78

Query: 745 RLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWERR-RKVAIGIAKALRFLHFHCSPS 801
            LH V  +     L+ E + G EL +    +    E         I   + +LH      
Sbjct: 79  TLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTK---K 135

Query: 802 VVAGDVSPGKVIVDGKDEPHLRLSVP--GLA-YCTDSKSINSSA----YVAPETKESKDI 854
           +   D+ P  +++  K+ P   + +   GLA    D     +      +VAPE    + +
Sbjct: 136 IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPL 195

Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTW 903
             + D++  G+I   LL+G SP   D       +I     Y + +   + +
Sbjct: 196 GLEADMWSIGVITYILLSGASPFLGDTKQETLANITS-VSYDFDE---EFF 242

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 39/246 (15%), Positives = 75/246 (30%), Gaps = 54/246 (21%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEG---------KELSEVLRNLSWERRRKVAIG 786
           +   HPN++R +    +++  Y+  E                 E L+         +   
Sbjct: 64  ESDDHPNVIRYYCSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQ 123

Query: 787 IAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP-----------GLA----- 830
           IA  +  LH      ++  D+ P  ++V                        GL      
Sbjct: 124 IASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDS 180

Query: 831 ----YCTDSKSI-NSSAYVAPE-------TKESKDITEKGDIYGFGLILIDLLT-GKSPA 877
               + T+  +   +S + APE        +  + +T   DI+  G +   +L+ GK P 
Sbjct: 181 GQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPF 240

Query: 878 DADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
              +    +I+    +   +              + +      E  +L       DP  R
Sbjct: 241 GDKYSRESNIIR-GIFSLDEMKCLHDR------SLIA------EATDLISQMIDHDPLKR 287

Query: 938 PCASDV 943
           P A  V
Sbjct: 288 PTAMKV 293

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 66.6 bits (163), Expect = 2e-11
 Identities = 51/258 (19%), Positives = 100/258 (38%), Gaps = 35/258 (13%)

Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVS---QFGKLIMHPNIVRLHGVCRSEKAA 756
              +      +  VK +I    +   +    +    Q  K + HPNI++L+     +   
Sbjct: 43  ILCKDKITGQECAVK-VISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYF 101

Query: 757 YLVYEYIEGKELSEVLRNLSW--ERR-RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
           YLV E   G EL + + +     E    ++   +   + ++H +    +V  D+ P  ++
Sbjct: 102 YLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLL 158

Query: 814 VDGKDE-PHLRLSVPGLA-YCTDSKSINSSA----YVAPETKESKDITEKGDIYGFGLIL 867
           ++ K +  ++R+   GL+ +   SK +        Y+APE        EK D++  G+IL
Sbjct: 159 LESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLH-GTYDEKCDVWSTGVIL 217

Query: 868 IDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNL 925
             LL+G  P     ++ + + + +  +Y +       W        VS          +L
Sbjct: 218 YILLSGCPPFNGANEYDILKKVEK-GKYTFEL---PQW------KKVSE------SAKDL 261

Query: 926 ALHCTAGDPTARPCASDV 943
                   P+ R  A D 
Sbjct: 262 IRKMLTYVPSMRISARDA 279

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 65.9 bits (161), Expect = 3e-11
 Identities = 53/267 (19%), Positives = 100/267 (37%), Gaps = 43/267 (16%)

Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL--------IM----HPNIVRLH 747
              +      +  +K I             + +             ++    HPNI++L 
Sbjct: 53  LLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLF 112

Query: 748 GVCRSEKAAYLVYEYIEGKELSEVLRNLSW--ERR-RKVAIGIAKALRFLHFHCSPSVVA 804
            V   +K  YLV E+ EG EL E + N     E     +   I   + +LH H   ++V 
Sbjct: 113 DVFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKH---NIVH 169

Query: 805 GDVSPGKVIVDGKDEP-HLRLSVPGLA-YCTDSKSINSSA----YVAPETKESKDITEKG 858
            D+ P  ++++ K+   ++++   GL+ + +    +        Y+APE  + K   EK 
Sbjct: 170 RDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLK-KKYNEKC 228

Query: 859 DIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ 916
           D++  G+I+  LL G  P     D  + + + +  +Y +     + W       ++S   
Sbjct: 229 DVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEK-GKYYFDF---NDWK------NISD-- 276

Query: 917 NEIVEIMNLALHCTAGDPTARPCASDV 943
               E   L       D   R  A + 
Sbjct: 277 ----EAKELIKLMLTYDYNKRCTAEEA 299

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 65.1 bits (159), Expect = 5e-11
 Identities = 54/261 (20%), Positives = 105/261 (40%), Gaps = 42/261 (16%)

Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGK--LIM----HPNIVRLHGVCRSE 753
              R     ++  +K II   +++TS      S+  +   ++    HPNI++L+     +
Sbjct: 54  LLCRDKVTHVERAIK-IIRKTSVSTS----SNSKLLEEVAVLKLLDHPNIMKLYDFFEDK 108

Query: 754 KAAYLVYEYIEGKELSEVLRNLSW--ERR-RKVAIGIAKALRFLHFHCSPSVVAGDVSPG 810
           +  YLV E  +G EL + + +     E     +   +   + +LH H   ++V  D+ P 
Sbjct: 109 RNYYLVMECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPE 165

Query: 811 KVIVDGKDE-PHLRLSVPGLA-YCTDSKSIN----SSAYVAPETKESKDITEKGDIYGFG 864
            ++++ K++   +++   GL+    + K +     ++ Y+APE    K   EK D++  G
Sbjct: 166 NLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIG 224

Query: 865 LILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEI 922
           +IL  LL G  P     D  +   + +  +Y +       W       +VS         
Sbjct: 225 VILFILLAGYPPFGGQTDQEILRKVEK-GKYTFDS---PEWK------NVSE------GA 268

Query: 923 MNLALHCTAGDPTARPCASDV 943
            +L       D   R  A   
Sbjct: 269 KDLIKQMLQFDSQRRISAQQA 289

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 64.2 bits (157), Expect = 5e-11
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 14/154 (9%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALR 792
           K++ HPNIV+L  V  +EK  YL+ EY  G E+ + L     +  +  R     I  A++
Sbjct: 69  KILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQ 128

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL-AYCTDSKSIN----SSAYVAPE 847
           + H      +V  D+    +++D     +++++  G     T    ++    +  Y APE
Sbjct: 129 YCHQKR---IVHRDLKAENLLLDADM--NIKIADFGFSNEFTVGGKLDAFCGAPPYAAPE 183

Query: 848 TKESKDIT-EKGDIYGFGLILIDLLTGKSPADAD 880
             + K     + D++  G+IL  L++G  P D  
Sbjct: 184 LFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQ 217

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 63.8 bits (156), Expect = 6e-11
 Identities = 39/175 (22%), Positives = 76/175 (43%), Gaps = 19/175 (10%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSW-ERR-RKVAIGIAK 789
           I+    H NI+ LH    S +   +++E+I G ++ E          ER        + +
Sbjct: 54  ILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCE 113

Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA----YV 844
           AL+FLH H   ++   D+ P  +I   +    +++   G A       +         Y 
Sbjct: 114 ALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYY 170

Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSD 897
           APE  +   ++   D++  G ++  LL+G +P  A+ +  + E+I+  A Y + +
Sbjct: 171 APEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMN-AEYTFDE 224

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 65.5 bits (159), Expect = 6e-11
 Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 736 KLIMHPNIVRLHGVCRSEK------AAYLVYEYIEGKELSEVLR------NLSWERRRKV 783
           K + HPN+V    V    +         L  EY EG +L + L        L     R +
Sbjct: 67  KKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTL 126

Query: 784 AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTDSKSINSSA 842
              I+ ALR+LH +    ++  D+ P  +++    +    ++   G A   D   + +  
Sbjct: 127 LSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEF 183

Query: 843 -----YVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
                Y+APE  E K  T   D + FG +  + +TG  P   +
Sbjct: 184 VGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPN 226

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 63.9 bits (156), Expect = 7e-11
 Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 26/222 (11%)

Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGK--LIM----HPNIVRLHGVCRSE 753
            K R  +  +++  K  I       S       +  +   I+    HPNI+ LH V  + 
Sbjct: 29  KKCREKSTGLEYAAK-FIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENR 87

Query: 754 KAAYLVYEYIEGKELSE--VLRNLSWERR-RKVAIGIAKALRFLHFHCSPSVVAGDVSPG 810
               L+ E + G EL +    +    E         I   + +LH      +   D+ P 
Sbjct: 88  TDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPE 144

Query: 811 KVIVDGKDEPHLRLSVP--GLA-YCTDSKSINSSA----YVAPETKESKDITEKGDIYGF 863
            +++  K+ P   + +   GLA    D     +      +VAPE    + +  + D++  
Sbjct: 145 NIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSI 204

Query: 864 GLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTW 903
           G+I   LL+G SP   D       +I     Y + +   + +
Sbjct: 205 GVITYILLSGASPFLGDTKQETLANITA-VSYDFDE---EFF 242

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 48/141 (34%), Positives = 69/141 (48%), Gaps = 8/141 (5%)

Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISN-ITSLQI 184
           VP G  ++   LDL  N L           + L  L LGGN L   +P  + N +TSL  
Sbjct: 22  VPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTY 80

Query: 185 FTLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTG 242
             L++NQL  S+P  +  +L  LK + L  N L   +P  + D LT L  L L  N L  
Sbjct: 81  LNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS 138

Query: 243 QIPP-SFGNLSNLRYLFLYQN 262
            +P   F  L++L+Y++L+ N
Sbjct: 139 -VPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 30/158 (18%)

Query: 228 TSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNY 287
               +LDL  N+L       F  L++L  L+L  NKL  S+P  +        F+     
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGV--------FN----- 73

Query: 288 LSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSL-ASMPKLQVLQLWSNQFSGEIPSNL-G 345
                     +L +L  L+L +N     +P+ +   + +L+ L L +NQ    +P  +  
Sbjct: 74  ----------KLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFD 121

Query: 346 KQNNLTVIDLSTNFLTGKIPETLCDS-GSLFKLILFSN 382
           K   L  + L  N L   +P+ + D   SL  + L  N
Sbjct: 122 KLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 33/149 (22%)

Query: 72  NISGKISSSIFH-LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIG- 129
           N    + + +F  L  +  + L  N+L   +P+ +F+   SL +LNLS N     +P G 
Sbjct: 38  NSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS-LPNGV 95

Query: 130 --SLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL 187
              L++L+ L L+ N L   +P+  G F  L                     T L+   L
Sbjct: 96  FDKLTQLKELALNTNQLQ-SLPD--GVFDKL---------------------TQLKDLRL 131

Query: 188 ASNQLIGSIPREI-GQLRNLKWIYLGYNN 215
             NQL  S+P  +  +L +L++I+L ++N
Sbjct: 132 YQNQL-KSVPDGVFDRLTSLQYIWL-HDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 6/144 (4%)

Query: 195 SIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNL 254
           S+P  I       ++ L  N+L         +LTSL  L L  N L       F  L++L
Sbjct: 21  SVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78

Query: 255 RYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVI-QLQNLEILHLFSNNF 312
            YL L  N+L  S+P  +   L  L    L+ N L   +P+ V  +L  L+ L L+ N  
Sbjct: 79  TYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136

Query: 313 TGKIPSSLASMPKLQVLQLWSNQF 336
                     +  LQ + L  N +
Sbjct: 137 KSVPDGVFDRLTSLQYIWLHDNPW 160

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 11/114 (9%)

Query: 444 TSLQMLNLAGNNFSGKLPDSF-GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNK 502
                L+L  N+        F     L  L L  N+        F +L+ L  L +S N+
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 503 LFGDIPEEL-SSCKKLVSLDLSNNQLSGHIPA----SLSEMPVLGQLDLSENQL 551
           L   +P  +     +L  L L+ NQL   +P      L++   L  L L +NQL
Sbjct: 88  L-QSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQ---LKDLRLYQNQL 136

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 18/158 (11%)

Query: 736 KLIMHPNIVRLHGV--CRSEKAAYLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKAL 791
           K + HPN+V+L  V    +E   Y+V+E +    + EV     LS ++ R     + K +
Sbjct: 91  KKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGI 150

Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL-AYCTD-----SKSINSSAYVA 845
            +LH+     ++  D+ P  ++V      H++++  G+           S ++ + A++A
Sbjct: 151 EYLHYQ---KIIHRDIKPSNLLVGEDG--HIKIADFGVSNEFKGSDALLSNTVGTPAFMA 205

Query: 846 PE--TKESKDIT-EKGDIYGFGLILIDLLTGKSPADAD 880
           PE  ++  K  + +  D++  G+ L   + G+ P   +
Sbjct: 206 PESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDE 243

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 46/231 (19%), Positives = 87/231 (37%), Gaps = 28/231 (12%)

Query: 691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGK--LIM----HPNIV 744
            G+  V    K R  +  +Q+  K  I      +S          +   I+    HPN++
Sbjct: 21  SGQFAVV--KKCREKSTGLQYAAK-FIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVI 77

Query: 745 RLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWERR-RKVAIGIAKALRFLHFHCSPS 801
            LH V  ++    L+ E + G EL +    +    E    +    I   + +LH      
Sbjct: 78  TLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL---Q 134

Query: 802 VVAGDVSPGKVIVDGKDEPHLRLSVP--GLA-YCTDSKSINSSA----YVAPETKESKDI 854
           +   D+ P  +++  ++ P  R+ +   GLA          +      +VAPE    + +
Sbjct: 135 IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPL 194

Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTW 903
             + D++  G+I   LL+G SP   D       ++     Y + D   + +
Sbjct: 195 GLEADMWSIGVITYILLSGASPFLGDTKQETLANVSA-VNYEFED---EYF 241

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 63.2 bits (153), Expect = 2e-10
 Identities = 25/236 (10%), Positives = 64/236 (27%), Gaps = 52/236 (22%)

Query: 735 GKLIMHPNIVRLHGVCRSEKAA--YLVYEYIEG------KELSEVLRN---LSWERRRKV 783
            K      ++R+    R       + +Y  ++       + L         L    R ++
Sbjct: 157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQL 216

Query: 784 AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS-- 841
            + + + L  LH +    +V   + P  +++D      + L+         + +++    
Sbjct: 217 TLQVIRLLASLHHYG---LVHTYLRPVDIVLD--QRGGVFLTGFEHLVRDGASAVSPIGR 271

Query: 842 -----AYVAPETKESKD-----ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWA 891
                   A             +T   D +  GL +  +     P        ++ +  +
Sbjct: 272 GFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLP----NT-DDAALGGS 326

Query: 892 RYCYSDC-HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT 946
            + +  C ++   V   + G                          R       +T
Sbjct: 327 EWIFRSCKNIPQPVRALLEG------------------FLRYPKEDRLLPLQAMET 364

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 31/224 (13%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           G+ G S    V  L +   + +K+I+            +     +L  HPNI+RL   C 
Sbjct: 38  GEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREA-DMHRLFNHPNILRLVAYCL 96

Query: 752 SEKAA----YLVYEYIEGKELSEVLRNLSWERRR-------KVAIGIAKALRFLHFHCSP 800
            E+ A    +L+  + +   L   +  L  +           + +GI + L  +H   + 
Sbjct: 97  RERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH---AK 153

Query: 801 SVVAGDVSPGKVIVDGKDEPHL---------RLSVPG---LAYCTDSKSINSSA-YVAPE 847
                D+ P  +++  + +P L          + V G        D  +   +  Y APE
Sbjct: 154 GYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPE 213

Query: 848 ---TKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIV 888
               +    I E+ D++  G +L  ++ G+ P D  F   +S+ 
Sbjct: 214 LFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVA 257

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 28/231 (12%)

Query: 691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGK--LIM----HPNIV 744
            G+  +    K R      ++  K  I    +++S       +  +   I+    HPNI+
Sbjct: 15  SGQFAIV--RKCRQKGTGKEYAAK-FIKKRRLSSSRRGVSREEIEREVNILREIRHPNII 71

Query: 745 RLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWERR-RKVAIGIAKALRFLHFHCSPS 801
            LH +  ++    L+ E + G EL +    +    E    +    I   + +LH      
Sbjct: 72  TLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSK---R 128

Query: 802 VVAGDVSPGKVIVDGKDEPHLRLSVP--GLA-YCTDSKSINSSA----YVAPETKESKDI 854
           +   D+ P  +++  K+ P+ R+ +   G+A          +      +VAPE    + +
Sbjct: 129 IAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPL 188

Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTW 903
             + D++  G+I   LL+G SP   +       +I     Y + +   + +
Sbjct: 189 GLEADMWSIGVITYILLSGASPFLGETKQETLTNISA-VNYDFDE---EYF 235

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 38/181 (20%), Positives = 78/181 (43%), Gaps = 22/181 (12%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSW-ERR-RKVAIGIAK 789
           +M    H N+++L+    S+    LV EY++G EL +  +  + +  E         I +
Sbjct: 139 VMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICE 198

Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA----YV 844
            +R +H      ++  D+ P  ++   +D   +++   GLA      + +  +     ++
Sbjct: 199 GIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTPEFL 255

Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDT 902
           APE      ++   D++  G+I   LL+G SP   D D     +I+   R+   D   + 
Sbjct: 256 APEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILA-CRWDLED---EE 311

Query: 903 W 903
           +
Sbjct: 312 F 312

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 9/120 (7%)

Query: 195 SIPREIGQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTGQIPPS-FGNLS 252
            IPR+I    +   + L  N L       +   L  L  L+L  N LTG I P+ F   S
Sbjct: 22  EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGAS 78

Query: 253 NLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVI-QLQNLEILHLFSN 310
           +++ L L +NK+   I   +  GL  L + +L DN +S  +       L +L  L+L SN
Sbjct: 79  HIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 26/132 (19%), Positives = 41/132 (31%), Gaps = 31/132 (23%)

Query: 88  ESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIG---SLSRLEILDLSNNML 144
             + L+ N+L       +F     L  L L  N  TG +        S ++ L L  N +
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKI 90

Query: 145 SGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREI-GQL 203
             +I      F GL                       L+   L  NQ+   +       L
Sbjct: 91  K-EISN--KMFLGL---------------------HQLKTLNLYDNQI-SCVMPGSFEHL 125

Query: 204 RNLKWIYLGYNN 215
            +L  + L  +N
Sbjct: 126 NSLTSLNL-ASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 83  HLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIG---SLSRLEILDL 139
            LPH+  + L  NQL+  I  + F  ++ ++ L L  N     +       L +L+ L+L
Sbjct: 52  RLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLNL 109

Query: 140 SNNMLSGKIPEEIGSFSGLKVL 161
            +N +S  +    GSF  L  L
Sbjct: 110 YDNQISC-VMP--GSFEHLNSL 128

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 444 TSLQMLNLAGNNFSGKLPDSFGSDQLENL---DLSENRFSGTIPRSFGRLSELMQLKISR 500
                L L  N    ++       +L +L   +L  N+ +G  P +F   S + +L++  
Sbjct: 29  LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87

Query: 501 NKLFGDIPEEL-SSCKKLVSLDLSNNQLS 528
           NK+  +I  ++     +L +L+L +NQ+S
Sbjct: 88  NKI-KEISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 11/89 (12%)

Query: 470 ENLDLSENRFSGTIPR-SFGRLSELMQLKISRNKLFGDIPEEL-SSCKKLVSLDLSNNQL 527
             L L++N          FGRL  L++L++ RN+L   I          +  L L  N++
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENKI 90

Query: 528 SGHIPA----SLSEMPVLGQLDLSENQLS 552
              I       L +   L  L+L +NQ+S
Sbjct: 91  K-EISNKMFLGLHQ---LKTLNLYDNQIS 115

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 60.8 bits (148), Expect = 6e-10
 Identities = 53/280 (18%), Positives = 103/280 (36%), Gaps = 49/280 (17%)

Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHGVCRSEKAA 756
           Y+   L + +   +KK+  +  +  +    D  +   L+    HPN+++ +     +   
Sbjct: 49  YRAACLLDGVPVALKKV-QIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNEL 107

Query: 757 YLVYEYIEGKELSEVLRNLSWERRR-------KVAIGIAKALRFLHFHCSPSVVAGDVSP 809
            +V E  +  +LS ++++   ++R        K  + +  AL  +H   S  V+  D+ P
Sbjct: 108 NIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKP 164

Query: 810 GKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA-----------YVAPETKESKDITEKG 858
             V +       ++L   GL      +  +S             Y++PE         K 
Sbjct: 165 ANVFITATG--VVKLGDLGLG-----RFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKS 217

Query: 859 DIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE 918
           DI+  G +L ++   +SP   D     S+ +  +    D        P    H S     
Sbjct: 218 DIWSLGCLLYEMAALQSPFYGDKMNLYSLCK--KIEQCDY------PPLPSDHYSE---- 265

Query: 919 IVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISSCVS 958
             E+  L   C   DP  RP  + V    +   R+ +C +
Sbjct: 266 --ELRQLVNMCINPDPEKRPDVTYV---YDVAKRMHACTA 300

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 7e-10
 Identities = 75/507 (14%), Positives = 146/507 (28%), Gaps = 135/507 (26%)

Query: 50  CKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGE-IPSDIFSS 108
           C    + C+    +  + L   N    +   +  L +    N +S       I   I S 
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 109 SNSLRFLNLSNNNFTGPVPIGSLSRLEILD-LSNNMLSGKIPEEIGSFS-GLKVL----- 161
              LR L L +  +           L +L  + N        +   +F+   K+L     
Sbjct: 231 QAELRRL-LKSKPY----ENC----LLVLLNVQN-------AKAWNAFNLSCKILLTTRF 274

Query: 162 ----DLGGNVLVGEIPLSISNIT-----SLQIFTLASNQLIGSIPREIGQLRNLKWIYLG 212
               D         I L   ++T        +     +     +PRE+      +     
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR----- 329

Query: 213 YNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI 272
              LS  I + I D   L   D                  N +++    +KLT  I  S 
Sbjct: 330 ---LSI-IAESIRD--GLATWD------------------NWKHVNC--DKLTTIIESS- 362

Query: 273 LGLKSLVSFDLSDNYLSGEI-PEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQ- 330
             L  L   +    +    + P                      IP+         +L  
Sbjct: 363 --LNVLEPAEYRKMFDRLSVFPPSA------------------HIPT--------ILLSL 394

Query: 331 LWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPN 390
           +W +    ++   + K +  ++++      T  IP    +             L+ K+ N
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-------------LKVKLEN 441

Query: 391 SLSTCKSLRRVRLQNNRLSGELSSEFTRLPLV--YFLDISGNDLSGRIGEQKWEMTSLQM 448
                 +L R  + +  +     S+    P +  YF    G+ L      ++  +  +  
Sbjct: 442 E----YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497

Query: 449 LNLAGNNF-------SGKLPDSFGS--DQLENLDLSENRFSGTIPRSFGRLSELMQ--LK 497
           L+     F            ++ GS  + L+ L   +       P+    ++ ++    K
Sbjct: 498 LDF---RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554

Query: 498 ISRNKLFGDIPEELSSCKKLVSLDLSN 524
           I  N +        S    L+ + L  
Sbjct: 555 IEENLI-------CSKYTDLLRIALMA 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 1e-07
 Identities = 70/432 (16%), Positives = 126/432 (29%), Gaps = 132/432 (30%)

Query: 183 QIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKE-IGDLTSLNHLDLVYNNLT 241
            I +      I      +     L W  L       E+ ++ + ++  +N     Y  L 
Sbjct: 44  SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE---EMVQKFVEEVLRIN-----YKFLM 95

Query: 242 GQIPPSFGNLSNLRYLFLYQ-NKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQ 300
             I       S +  +++ Q ++L           K  VS             +  ++L+
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA---KYNVS-----------RLQPYLKLR 141

Query: 301 NLEILHLFSNNF--------TGKIPSSLASMPKLQVLQLWS--NQFSGEIP-SNLGKQNN 349
              +L L             +GK  + +A    L V   +    +   +I   NL   N 
Sbjct: 142 QA-LLELRPAKNVLIDGVLGSGK--TWVA----LDVCLSYKVQCKMDFKIFWLNLKNCN- 193

Query: 350 LTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKI-PNSLSTCKSLRRVRLQNNRL 408
                          PET+     L  L      L  +I PN  S       ++L+ + +
Sbjct: 194 --------------SPETV-----LEML----QKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 409 SGELSSEFTRLP-----LVYFLDISGNDLSGRIGEQKWEMTSLQMLN------------- 450
             EL       P     LV  L     ++            +    N             
Sbjct: 231 QAELRRLLKSKPYENCLLV--LL----NV--------QNAKAWNAFNLSCKILLTTRFKQ 276

Query: 451 ----LAGNN----FSGKLPDSFGSDQLENL----------DLSENRFSGTIPRSFGRLSE 492
               L+              +   D++++L          DL       T PR    ++E
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAE 335

Query: 493 LMQLKISRNKLFGDIPEELSSCKKLVS-LDLSNNQLSGHIPASLSEMPVLGQLDLSENQL 551
            ++  ++    +  +     +C KL + ++ S N L    PA   +M       LS    
Sbjct: 336 SIRDGLATWDNWKHV-----NCDKLTTIIESSLNVLE---PAEYRKM----FDRLSVFPP 383

Query: 552 SGKIP-QTLGRV 562
           S  IP   L  +
Sbjct: 384 SAHIPTILLSLI 395

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 8e-07
 Identities = 100/682 (14%), Positives = 192/682 (28%), Gaps = 212/682 (31%)

Query: 286 NYLSGEIPEEVIQLQNLEILHLFSNNFTGKIP-SSLASMPKLQVLQLWSNQFSGEIPSNL 344
           +++  E  E   Q Q  +IL +F + F        +  MPK  +L         EI   +
Sbjct: 5   HHMDFETGE--HQYQYKDILSVFEDAFVDNFDCKDVQDMPK-SILS------KEEIDHII 55

Query: 345 GKQNNLTVIDLSTNFLTGKIPETLCDSGS-----LFKLILFSN--------SLEGKIPNS 391
             ++ ++            +  TL            + +L  N          E + P+ 
Sbjct: 56  MSKDAVSGTLR--------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107

Query: 392 LSTCKSLRRVRLQNNRLSGELSSEF--TRLPLVYFL--------DISGNDLSGRIGEQKW 441
           ++     +R RL N+    ++ +++  +RL     L              + G +G  K 
Sbjct: 108 MTRMYIEQRDRLYND---NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK- 163

Query: 442 EMTSLQMLNLAGNNFSGKLPD-----SFGS--------DQLENL-------DLSENRFSG 481
             T + +          K+       +  +        + L+ L         S +  S 
Sbjct: 164 --TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 482 TIPRSF----GRLSELMQLKISRNKLF--GDI--PEELS----SCKKLV-SLDLSN-NQL 527
            I          L  L++ K   N L    ++   +  +    SCK L+ +      + L
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 528 SGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPS---TGA 584
           S      +S       L   E             +   +            LP    T  
Sbjct: 282 SAATTTHISLDHHSMTLTPDE---------VKSLLLKYLDCRPQ------DLPREVLTTN 326

Query: 585 FLAINATAVAGNDLCGGDSTSGLPPCKGNKKNQTWWL--VVACFLAVL-------IMLAL 635
              +   ++    +  G +T         K      L  ++   L VL       +   L
Sbjct: 327 PRRL---SIIAESIRDGLATW-----DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 636 AAF----AITVIRGKKILELKRVENEDGIW------EVQFFNSK-VGKSLTIDEIISSTT 684
           + F     I       +L L        IW      +V    +K    SL          
Sbjct: 379 SVFPPSAHIPT----ILLSL--------IWFDVIKSDVMVVVNKLHKYSL---------- 416

Query: 685 EENLTSRGKKGVSSSY----KVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQ------F 734
              +  + K+   S      +++    +   + + I+D   I  +    D+        F
Sbjct: 417 ---VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 735 GKLIMHPNIVRLH--GVCRSEKAA-----YLVYEYIEGKELSEVLRN--LSWERRRKVAI 785
              I H      H   +   E+       +L + ++E K     +R+   +W        
Sbjct: 474 YSHIGH------HLKNIEHPERMTLFRMVFLDFRFLEQK-----IRHDSTAWNASG---- 518

Query: 786 GIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYVA 845
            I   L+ L F+               I D   +    ++    A       I  +   +
Sbjct: 519 SILNTLQQLKFY------------KPYICDNDPKYERLVN----AILDFLPKIEENLICS 562

Query: 846 PETKESKDI------TEKGDIY 861
             T    D+       E   I+
Sbjct: 563 KYT----DLLRIALMAEDEAIF 580

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 8e-06
 Identities = 51/329 (15%), Positives = 97/329 (29%), Gaps = 71/329 (21%)

Query: 646 KKILELKR---VENEDGIWEVQFFNSKVGKSLTIDEIISSTTEEN--------LTSRGKK 694
           K IL +     V+N D   +VQ     +     ID II S    +        L S+ ++
Sbjct: 19  KDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77

Query: 695 GVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK 754
            V   +    L  + +F++  I       +      + Q  +L     +   + V R + 
Sbjct: 78  MV-QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136

Query: 755 AAYLVYEYIEGKELSEVLRNLSWERRRKVAI----GIAKALRFLHFHCSPSVVAGDV--- 807
                       +L + L  L     + V I    G  K           + VA DV   
Sbjct: 137 Y----------LKLRQALLEL--RPAKNVLIDGVLGSGK-----------TWVALDVCLS 173

Query: 808 ------SPGKVI---VDGKDEPHLRL-------SVPGLAYCTDSKSINSSAYVAPETKES 851
                    K+    +   + P   L             + + S   ++        +  
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 852 KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH 911
                K   Y   L+++  +      +A F +   I+   R       +  ++      H
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKILLTTR----FKQVTDFLSAATTTH 288

Query: 912 VSSIQN-------EIVEIMNLALHCTAGD 933
           +S   +       E+  ++   L C   D
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-05
 Identities = 73/517 (14%), Positives = 151/517 (29%), Gaps = 159/517 (30%)

Query: 440 KWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKIS 499
           K+ M+ ++      +     +      +Q + L      F+     +  RL   ++L   
Sbjct: 92  KFLMSPIKTEQRQPS-----MMTRMYIEQRDRLYNDNQVFA---KYNVSRLQPYLKL--- 140

Query: 500 RNKLFGDIPEE------LSSCKK--LVSLDLSNNQLSGHIPAS---LSEMPVLGQLDLSE 548
           R  L    P +      +    K  +      + ++   +      L+    L   +  E
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPE 196

Query: 549 NQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGNDLCGGDSTSGLP 608
             L  ++ Q L          I  N    S  S+   L I++       L     +    
Sbjct: 197 TVL--EMLQKL-------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL---KSKPYE 244

Query: 609 PCKGNKKNQTWWLVVACFLAVLIML-------ALAAFAITVIRGKKILELKRVENEDGIW 661
            C                   L++L       A  AF ++     KIL   R      + 
Sbjct: 245 NC-------------------LLVLLNVQNAKAWNAFNLSC----KILLTTR---FKQV- 277

Query: 662 EVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSY---KVRSLANDMQFVVKKIID 718
              F ++     +++D    + T + +     K +   Y   + + L  ++         
Sbjct: 278 -TDFLSAATTTHISLDHHSMTLTPDEV-----KSLLLKYLDCRPQDLPREV----LTTN- 326

Query: 719 VNTITTSSFWP-DVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV----LR 773
                     P  +S   + I         G+   +      ++++   +L+ +    L 
Sbjct: 327 ----------PRRLSIIAESIRD-------GLATWDN-----WKHVNCDKLTTIIESSLN 364

Query: 774 NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVS-PGKVIV---DGKDEPHLRLSVPGL 829
            L     RK          F       SV       P  ++        +  + + V  L
Sbjct: 365 VLEPAEYRK---------MFDRL----SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 830 AYCTDSKS-INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIV 888
                  S +          K+ K+ T          I ++L   K   + ++ +H SIV
Sbjct: 412 H----KYSLVE---------KQPKEST-----ISIPSIYLEL---KVKLENEYALHRSIV 450

Query: 889 E----WARYCYSDC---HLDTWVDPFIRGHVSSIQNE 918
           +       +   D    +LD +    I  H+ +I++ 
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 60.0 bits (146), Expect = 8e-10
 Identities = 63/270 (23%), Positives = 107/270 (39%), Gaps = 53/270 (19%)

Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVS--QFGKLIMHPNIVRLHG--VCRSEKA 755
            K+R  ++    V K++ D  ++T +     VS     + + HPNIVR +   + R+   
Sbjct: 23  QKIRRKSDGKILVWKEL-DYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTT 81

Query: 756 AYLVYEYIEGKELSEVLRNLSWERRR-------KVAIGIAKALRFLH--FHCSPSVVAGD 806
            Y+V EY EG +L+ V+   + ER+        +V   +  AL+  H       +V+  D
Sbjct: 82  LYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRD 141

Query: 807 VSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA-----------YVAPETKESKDIT 855
           + P  V +DGK   +++L   GL     ++ +N              Y++PE        
Sbjct: 142 LKPANVFLDGKQ--NVKLGDFGL-----ARILNHDTSFAKTFVGTPYYMSPEQMNRMSYN 194

Query: 856 EKGDIYGFGLILIDLLTGKSPADAD--FGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS 913
           EK DI+  G +L +L     P  A     +   I E  ++              I    S
Sbjct: 195 EKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIRE-GKF------------RRIPYRYS 241

Query: 914 SIQNEIVEIMNLALHCTAGDPTARPCASDV 943
              NEI+  M   L+        RP   ++
Sbjct: 242 DELNEIITRM---LNL---KDYHRPSVEEI 265

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 59.9 bits (146), Expect = 8e-10
 Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 19/167 (11%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL-------SEVLRNLSWERRRKVAIGIA 788
           K + HPNI+++  V       Y+V E  EG EL           + LS     ++   + 
Sbjct: 75  KSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMM 134

Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLA-YCTDSKSINSSA---- 842
            AL + H      VV  D+ P  ++         +++   GLA      +   ++A    
Sbjct: 135 NALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGTAL 191

Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESI 887
           Y+APE  + +D+T K DI+  G+++  LLTG  P    +   V +  
Sbjct: 192 YMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKA 237

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 60.8 bits (147), Expect = 8e-10
 Identities = 28/231 (12%), Positives = 57/231 (24%), Gaps = 36/231 (15%)

Query: 735 GKLIMHPNIVRLHGVCRSEKAA--YLVYEYIEGKELSEVLRNL----------SWERRRK 782
             +   P   +L         A   L+       +L  +   L                 
Sbjct: 140 VAVQSQPPFAQLSPGQDDYAVANYLLLMPAASV-DLELLFSTLDFVYVFRGDEGILALHI 198

Query: 783 VAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--INS 840
           +   + +    L    S  +V G  +P  + +       L L      +   ++    + 
Sbjct: 199 LTAQLIRLAANLQ---SKGLVHGHFTPDNLFIMPDG--RLMLGDVSALWKVGTRGPASSV 253

Query: 841 SAYVAPE---TKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVE--WARYCY 895
               AP       +   T   + +  GL +  +     P    FG+    ++  W R   
Sbjct: 254 PVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLP----FGLVTPGIKGSWKRPSL 309

Query: 896 SDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT 946
                D+         +         +  L       D   R    +  +T
Sbjct: 310 RVPGTDSLAFGSCT-PLPD------FVKTLIGRFLNFDRRRRLLPLEAMET 353

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 61.2 bits (149), Expect = 9e-10
 Identities = 47/261 (18%), Positives = 101/261 (38%), Gaps = 42/261 (16%)

Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGK--LIM----HPNIVRLHGVCRSE 753
            K +      ++ VK +I+  +        D S   +   ++    HPNI++L  +    
Sbjct: 39  LKCKDRITQQEYAVK-VINKASAKNK----DTSTILREVELLKKLDHPNIMKLFEILEDS 93

Query: 754 KAAYLVYEYIEGKELSEVLRNLSW--ERR-RKVAIGIAKALRFLHFHCSPSVVAGDVSPG 810
            + Y+V E   G EL + +       E    ++   +   + ++H H   ++V  D+ P 
Sbjct: 94  SSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPE 150

Query: 811 KVIVDGKDEP-HLRLSVPGLA-YCTDSKSINSSA----YVAPETKESKDITEKGDIYGFG 864
            ++++ K++   +++   GL+     +  +        Y+APE        EK D++  G
Sbjct: 151 NILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLR-GTYDEKCDVWSAG 209

Query: 865 LILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEI 922
           +IL  LL+G  P     ++ + + +    +Y +       W        +S       + 
Sbjct: 210 VILYILLSGTPPFYGKNEYDILKRVET-GKYAFDL---PQW------RTISD------DA 253

Query: 923 MNLALHCTAGDPTARPCASDV 943
            +L        P+ R  A+  
Sbjct: 254 KDLIRKMLTFHPSLRITATQC 274

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 59.9 bits (146), Expect = 1e-09
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 12/154 (7%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWERR-RKVAIGIAKALR 792
           + + HPNIVRLH   + E   YLV++ + G EL E  V R    E         I +++ 
Sbjct: 60  RKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIA 119

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLA-YCTDSKSINSSA----YVAP 846
           + H +    +V  ++ P  +++  K +   ++L+  GLA    DS++ +  A    Y++P
Sbjct: 120 YCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSP 176

Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           E  +    ++  DI+  G+IL  LL G  P   +
Sbjct: 177 EVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE 210

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 28/235 (11%), Positives = 68/235 (28%), Gaps = 51/235 (21%)

Query: 736 KLIMHPNIVRLHGVCRSEKAA--YLVYEYIE------GKELSEVLRN---LSWERRRKVA 784
           K      ++R+    R       + +Y  ++      G+ L         L    R ++ 
Sbjct: 153 KDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLT 212

Query: 785 IGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK--SINSSA 842
           + + + L  LH +    +V   + P  +++D +    + L+         ++  S  S  
Sbjct: 213 LQVIRLLASLHHY---GLVHTYLRPVDIVLDQRG--GVFLTGFEHLVRDGARVVSSVSRG 267

Query: 843 YVAPET-----------KESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWA 891
           +  PE                 +T   D +  GL++  +     P        ++ +  +
Sbjct: 268 FEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLP----IT-KDAALGGS 322

Query: 892 RYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT 946
            + +  C            ++         +  L           R       +T
Sbjct: 323 EWIFRSCK-----------NIPQ------PVRALLEGFLRYPKEDRLLPLQAMET 360

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 37/178 (20%), Positives = 75/178 (42%), Gaps = 22/178 (12%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKEL-----SEVLRNLSWERR-RKVAIGIAKALRF 793
            P ++ LH V  +     L+ EY  G E+      E+   +S E    ++   I + + +
Sbjct: 88  CPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVS-ENDVIRLIKQILEGVYY 146

Query: 794 LHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLA-YCTDSKSINSSA----YVAPE 847
           LH +   ++V  D+ P  +++        +++   G++     +  +        Y+APE
Sbjct: 147 LHQN---NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPE 203

Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTW 903
                 IT   D++  G+I   LLT  SP   + +   + +I +     YS+   +T+
Sbjct: 204 ILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQ-VNVDYSE---ETF 257

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 26/164 (15%)

Query: 736 KLIMHPNIVRLHGV--CRSEKAAYLVYEYIEGKELSEVL------RNLSWERRRKVAIGI 787
           K + H NIV+L  +    + +   L+ E+     L  VL        L       V   +
Sbjct: 62  KKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDV 121

Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLA-YCTDSKSINSS--- 841
              +  L  +    +V  ++ PG ++    ++      +   G A    D +   S    
Sbjct: 122 VGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGT 178

Query: 842 -AYVAPE--------TKESKDITEKGDIYGFGLILIDLLTGKSP 876
             Y+ P+            K      D++  G+      TG  P
Sbjct: 179 EEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLP 222

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 37/213 (17%), Positives = 78/213 (36%), Gaps = 33/213 (15%)

Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVC-------RS 752
           Y+ + + +  ++ +K+++        +   +V    KL  HPNIV+             +
Sbjct: 45  YEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDT 104

Query: 753 EKAAYLVYEYIEGKELSEVLRNLSWERR------RKVAIGIAKALRFLHFHCSPSVVAGD 806
            +A +L+   +   +L E L+ +            K+     +A++ +H    P ++  D
Sbjct: 105 GQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMH-RQKPPIIHRD 163

Query: 807 VSPGKVIVDGK---------------DEPHLRLSVPGLAYCTDSKSINSS-AYVAPE--- 847
           +    +++  +                 P    S    A   +  + N++  Y  PE   
Sbjct: 164 LKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIID 223

Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
              +  I EK DI+  G IL  L   + P +  
Sbjct: 224 LYSNFPIGEKQDIWALGCILYLLCFRQHPFEDG 256

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 31/206 (15%)

Query: 695 GVSSSYKVRSLANDM---QFVVKKIIDVNTITTSSFWPDVS---QFGKLIMHPNIVRLHG 748
           GV +  KV+ +         V  KI++   I +      +    Q  KL  HP+I++L+ 
Sbjct: 20  GVGTFGKVK-IGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQ 78

Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAG 805
           V  +    ++V EY+ G EL + +     +     R++   I  A+ + H H    VV  
Sbjct: 79  VISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRH---MVVHR 135

Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLA--YCTDSK---SINSSAYVAPETKESKDITEKG-- 858
           D+ P  V++D     + +++  GL+           S  S  Y APE      I+ +   
Sbjct: 136 DLKPENVLLDAHM--NAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEV-----ISGRLYA 188

Query: 859 ----DIYGFGLILIDLLTGKSPADAD 880
               DI+  G+IL  LL G  P D +
Sbjct: 189 GPEVDIWSCGVILYALLCGTLPFDDE 214

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 22/157 (14%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALR 792
           + + HPNIVR   V  +     ++ EY  G EL E + N    S +  R     +   + 
Sbjct: 71  RSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICNAGRFSEDEARFFFQQLLSGVS 130

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--YCTDSK---SINSSAYVAPE 847
           + H      +   D+     ++DG   P L++   G +      S+   ++ + AY+APE
Sbjct: 131 YCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPE 187

Query: 848 TKESKDITEKG------DIYGFGLILIDLLTGKSPAD 878
                 +  +       D++  G+ L  +L G  P +
Sbjct: 188 V-----LLRQEYDGKIADVWSCGVTLYVMLVGAYPFE 219

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 49/265 (18%), Positives = 104/265 (39%), Gaps = 52/265 (19%)

Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHGVCRSEKAA 756
             V+S  +  Q+V+K+I +++ +++     +  +   ++    HPNIV+         + 
Sbjct: 41  ILVKSTEDGRQYVIKEI-NISRMSSKE-REESRREVAVLANMKHPNIVQYRESFEENGSL 98

Query: 757 YLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGK 811
           Y+V +Y EG +L + +          ++     + I  AL+ +H      ++  D+    
Sbjct: 99  YIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQN 155

Query: 812 VIVDGKDEPHLRLSVPGLAYCTDSKSINSSA-----------YVAPETKESKDITEKGDI 860
           + +       ++L   G+A     + +NS+            Y++PE  E+K    K DI
Sbjct: 156 IFLTKDG--TVQLGDFGIA-----RVLNSTVELARACIGTPYYLSPEICENKPYNNKSDI 208

Query: 861 YGFGLILIDLLTGKSPADAD--FGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE 918
           +  G +L +L T K   +A     +   I+    +            P +  H S     
Sbjct: 209 WALGCVLYELCTLKHAFEAGSMKNLVLKIIS-GSF------------PPVSLHYSY---- 251

Query: 919 IVEIMNLALHCTAGDPTARPCASDV 943
             ++ +L       +P  RP  + +
Sbjct: 252 --DLRSLVSQLFKRNPRDRPSVNSI 274

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 10/146 (6%)

Query: 189 SNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSF 248
           + +LI     +       + + L    +   I      L   + +D   N +  ++   F
Sbjct: 5   TAELIEQAA-QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG-F 60

Query: 249 GNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLS--GEIPEEVIQLQNLEILH 306
             L  L+ L +  N++          L  L    L++N L   G++ + +  L++L  L 
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLC 119

Query: 307 LFSNNFTGKI---PSSLASMPKLQVL 329
           +  N  T K       +  +P+++VL
Sbjct: 120 ILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 6/115 (5%)

Query: 246 PSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEIL 305
             + N    R L L   K+   I      L    + D SDN +  ++ +    L+ L+ L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTL 69

Query: 306 HLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS--GEIPSNLGKQNNLTVIDLSTN 358
            + +N           ++P L  L L +N     G++   L    +LT + +  N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 21/126 (16%), Positives = 54/126 (42%), Gaps = 7/126 (5%)

Query: 67  ELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPV 126
           +L+A+ I  + ++   +      ++L   ++   +  ++ ++ +    ++ S+N      
Sbjct: 3   KLTAELI--EQAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKLD 58

Query: 127 PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVL--VGEIPLSISNITSLQI 184
               L RL+ L ++NN +         +   L  L L  N L  +G++   ++++ SL  
Sbjct: 59  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTY 117

Query: 185 FTLASN 190
             +  N
Sbjct: 118 LCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 5/127 (3%)

Query: 448 MLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDI 507
           M+ L       +      + +   LDL   +    I      L +   +  S N++   +
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI-RKL 57

Query: 508 PEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSG-KIPQTLGRVASLV 566
            +     ++L +L ++NN++          +P L +L L+ N L        L  + SL 
Sbjct: 58  -DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 567 QVNISHN 573
            + I  N
Sbjct: 117 YLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 12/118 (10%)

Query: 342 SNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRV 401
           +          +DL    +   I E L  +   F  I FS++   K+       + L+ +
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTL 69

Query: 402 RLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQK-----WEMTSLQMLNLAGN 454
            + NNR+          LP +  L ++ N     + E         + SL  L +  N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNN----SLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 19/134 (14%)

Query: 352 VIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGE 411
           ++ L+   +  +  +   ++    +L L    +   I N  +T      +   +N +  +
Sbjct: 1   MVKLTAELIE-QAAQ-YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-K 56

Query: 412 LSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFS--------GKLPDS 463
           L   F  L  +  L ++ N +          +  L  L L  N+            L   
Sbjct: 57  LDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK-- 113

Query: 464 FGSDQLENLDLSEN 477
                L  L +  N
Sbjct: 114 ----SLTYLCILRN 123

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 57.9 bits (140), Expect = 6e-09
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 26/164 (15%)

Query: 736 KLIMHPNIVRLHGV--CRSEKAAYLVYEYIEGKELSEVL------RNLSWERRRKVAIGI 787
           K + H NIV+L  +    + +   L+ E+     L  VL        L       V   +
Sbjct: 62  KKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDV 121

Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLA-YCTDSKSINSS--- 841
              +  L  +    +V  ++ PG ++    ++      +   G A    D +   S    
Sbjct: 122 VGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGT 178

Query: 842 -AYVAPE--------TKESKDITEKGDIYGFGLILIDLLTGKSP 876
             Y+ P+            K      D++  G+      TG  P
Sbjct: 179 EEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLP 222

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 57.7 bits (140), Expect = 7e-09
 Identities = 51/260 (19%), Positives = 95/260 (36%), Gaps = 36/260 (13%)

Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVC----RSEKA 755
            +        +  +K + D           +V    +    P+IV +  V       ++ 
Sbjct: 46  LECFHRRTGQKCALKLLYDSPKARQ-----EVDHHWQASGGPHIVCILDVYENMHHGKRC 100

Query: 756 AYLVYEYIEGKELSE--VLRNLSW--ERR-RKVAIGIAKALRFLHFHCSPSVVAGDVSPG 810
             ++ E +EG EL      R      ER   ++   I  A++FLH H   ++   DV P 
Sbjct: 101 LLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPE 157

Query: 811 KVIVDGKDE-PHLRLSVPGLAYCTDSKSINSSA----YVAPETKESKDITEKGDIYGFGL 865
            ++   K++   L+L+  G A  T   ++ +      YVAPE    +   +  D++  G+
Sbjct: 158 NLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGV 217

Query: 866 ILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIM 923
           I+  LL G  P  ++    +   +    R          W        VS    +++ ++
Sbjct: 218 IMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEW------SEVSEDAKQLIRLL 271

Query: 924 NLALHCTAGDPTARPCASDV 943
              L     DPT R   +  
Sbjct: 272 ---LKT---DPTERLTITQF 285

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 57.7 bits (140), Expect = 7e-09
 Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 27/198 (13%)

Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGK--LIM----HPNIVRLHGVCRSE 753
            +  +     QF VK I+DV   T+S          +   I     HP+IV L     S+
Sbjct: 41  RRCINRETGQQFAVK-IVDVAKFTSSPG-LSTEDLKREASICHMLKHPHIVELLETYSSD 98

Query: 754 KAAYLVYEYIEGKEL-------SEVLRNLSWERR-RKVAIGIAKALRFLHFHCSPSVVAG 805
              Y+V+E+++G +L       ++     S E         I +ALR+ H +   +++  
Sbjct: 99  GMLYMVFEFMDGADLCFEIVKRADAGFVYS-EAVASHYMRQILEALRYCHDN---NIIHR 154

Query: 806 DVSPGKVIVDGKDEPH-LRLSVPGLA-YCTDSKSINSSA-----YVAPETKESKDITEKG 858
           DV P  V++  K+    ++L   G+A    +S  +         ++APE  + +   +  
Sbjct: 155 DVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPV 214

Query: 859 DIYGFGLILIDLLTGKSP 876
           D++G G+IL  LL+G  P
Sbjct: 215 DVWGCGVILFILLSGCLP 232

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 58.8 bits (142), Expect = 7e-09
 Identities = 77/535 (14%), Positives = 160/535 (29%), Gaps = 82/535 (15%)

Query: 22  ELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSI 81
           E+E     K  + + Y  +S       F K   +  +   H     L      G +   I
Sbjct: 39  EIERWCRRKVFIGNCY-AVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWI 97

Query: 82  FHL----PHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSN-NNFT--GPVPIGS-LSR 133
             +      +E I L    ++ +    I  S  + + L LS+   F+  G   I +    
Sbjct: 98  EAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRN 157

Query: 134 LEILDLSNNMLSGKIPEEIGSFS----GLKVLDLGGNVLVGEIPLSISNITSLQIFTLAS 189
           L+ LDL  + +       +  F      L  L++             S ++   +  L +
Sbjct: 158 LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA---------SEVSFSALERLVT 208

Query: 190 NQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVY------NNLTGQ 243
                          NLK + L       ++   +     L  L           ++   
Sbjct: 209 R------------CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG 256

Query: 244 IPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQ-LQNL 302
           +  +      LR L  + + +   +P        L + +LS   +      +++     L
Sbjct: 257 LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKL 316

Query: 303 EILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTG 362
           + L +        +    ++   L+ L++        +           ++ +S      
Sbjct: 317 QRLWVLDYIEDAGLEVLASTCKDLRELRV--FPSEPFVMEPNVALTEQGLVSVSMGCP-- 372

Query: 363 KIPETLCDSGSLFKLILFSNSLEGKIPNSLST-CKSLRRVRLQNNRLSGELSSEFTRLPL 421
                      L  ++ F   +      +++    ++ R RL    +  +     T  P 
Sbjct: 373 ----------KLESVLYFCRQMTNAALITIARNRPNMTRFRLCI--IEPKAPDYLTLEP- 419

Query: 422 VYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPD------SFGSDQLENLDLS 475
              LDI    +             L+ L+L     SG L D         + ++E L ++
Sbjct: 420 ---LDIGFGAIVEH-------CKDLRRLSL-----SGLLTDKVFEYIGTYAKKMEMLSVA 464

Query: 476 ENRFSGTIPRSFGR-LSELMQLKISRNKLFGD-IPEELSSCKKLVSLDLSNNQLS 528
               S             L +L+I         +    S  + + SL +S+  +S
Sbjct: 465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 78/544 (14%), Positives = 160/544 (29%), Gaps = 99/544 (18%)

Query: 50  CK-WNGISCQNSTHVNAIELSAKNISGKISSSIFH-LPHVESINLSSNQLSGEIPSDIFS 107
           CK W  I            +   N      +++    P V S+ L             F+
Sbjct: 34  CKSWYEIERWCRRK-----VFIGNCYAVSPATVIRRFPKVRSVELKGKPH--------FA 80

Query: 108 SSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIG-SFSGLKVLDLGGN 166
             N +                 S + LE + L   +++    E I  SF   KVL L   
Sbjct: 81  DFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS- 139

Query: 167 VLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGD 226
                        ++  +  +A+              RNLK + L  +++       +  
Sbjct: 140 ---------CEGFSTDGLAAIAAT------------CRNLKELDLRESDVDDVSGHWLSH 178

Query: 227 LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFL--YQNKLTGSIPKSIL-GLKSLVSFDL 283
                                    ++L  L +    ++++ S  + ++    +L S  L
Sbjct: 179 FPD--------------------TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218

Query: 284 SDNYLSGEIPEEVIQLQNLEILHLFS------NNFTGKIPSSLASMPKLQVLQLWSNQFS 337
           +      ++   + +   LE L           +    +  +L+   +L+ L  + +   
Sbjct: 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278

Query: 338 GEIPSNLGKQNNLTVIDLSTNFLTGK-IPETLCDSGSLFKLILFSNSLEGKIPNSLSTCK 396
             +P+     + LT ++LS   +    + + LC    L +L +     +  +    STCK
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK 338

Query: 397 SLRRVRLQN-NRLSGELSSEFTRLPLVYF---------LDISGNDLSGR----IGEQKWE 442
            LR +R+        E +   T   LV           +      ++      I      
Sbjct: 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN--- 395

Query: 443 MTSLQMLNLAGNNFSGKLPDSF------------GSDQLENLDLSENRFSGTIPRSFGRL 490
             ++    L           +                 L  L LS               
Sbjct: 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYA 455

Query: 491 SELMQLKISRNKLFGD-IPEELSSCKKLVSLDLSNNQLSG-HIPASLSEMPVLGQLDLSE 548
            ++  L ++        +   LS C  L  L++ +       + A+ S++  +  L +S 
Sbjct: 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

Query: 549 NQLS 552
             +S
Sbjct: 516 CSVS 519

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 57.2 bits (139), Expect = 7e-09
 Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 13/154 (8%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWERR-RKVAIGIAKALR 792
           K + HPNI+RL+         YLV E   G EL E  V + +  E    ++   +  A+ 
Sbjct: 61  KSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVA 120

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLA-YCTDSKSINSSA----YVAP 846
           + H     +V   D+ P   +         L+L   GLA      K + +      YV+P
Sbjct: 121 YCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSP 177

Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           +  E      + D +  G+++  LL G  P  A 
Sbjct: 178 QVLE-GLYGPECDEWSAGVMMYVLLCGYPPFSAP 210

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 43/237 (18%), Positives = 82/237 (34%), Gaps = 43/237 (18%)

Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKL-----IM--------HPNIVRLHGVCRSEKAAYL 758
           V  K+I  N +     W  +S          ++        HP ++RL     +++   L
Sbjct: 59  VAIKVIPRNRVLG---WSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEGFML 115

Query: 759 VYEY-IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV 814
           V E  +  ++L + +     L     R     +  A++  H      VV  D+    +++
Sbjct: 116 VLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILI 172

Query: 815 DGKDEPHLRLSVPGL-AYCTDSK---SINSSAYVAPETKESKDITEKG------DIYGFG 864
           D +     +L   G  A   D        +  Y  PE      I+          ++  G
Sbjct: 173 DLRRG-CAKLIDFGSGALLHDEPYTDFDGTRVYSPPEW-----ISRHQYHALPATVWSLG 226

Query: 865 LILIDLLTGKSPADADFGVHESIVEWARYCYSDC-HLDTW---VDPFIRGHVSSIQN 917
           ++L D++ G  P + D  + E+ + +  +   DC  L        P  R  +  I  
Sbjct: 227 ILLYDMVCGDIPFERDQEILEAELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILL 283

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 57.7 bits (140), Expect = 7e-09
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 14/165 (8%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWERR-RKVAIGIAKALR 792
           + + HPNIVRLH   + E   YLV++ + G EL E  V R    E         I +++ 
Sbjct: 83  RKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIA 142

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLA-YCTDSKSINSSA----YVAP 846
           + H +    +V  ++ P  +++  K +   ++L+  GLA    DS++ +  A    Y++P
Sbjct: 143 YCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSP 199

Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
           E  +    ++  DI+  G+IL  LL G  P   +    ++  I  
Sbjct: 200 EVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKA 244

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 57.0 bits (138), Expect = 8e-09
 Identities = 54/287 (18%), Positives = 100/287 (34%), Gaps = 58/287 (20%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVC 750
           G+ G    ++ ++  +D  + +K+I +    +       +V    KL  HP IVR     
Sbjct: 14  GRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKL-EHPGIVRYFNAW 72

Query: 751 RSEKAA------------YLVYEYIEGKELSEVL--RNLSWERRRKVAIG----IAKALR 792
             +               Y+  +    + L + +  R    ER R V +     IA+A+ 
Sbjct: 73  LEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVE 132

Query: 793 FLHFHCSPSVVAGDVSPGKVIVD----------------GKDEPHLRLSVPGLAYCTDSK 836
           FLH   S  ++  D+ P  +                    +DE    +  P  AY   + 
Sbjct: 133 FLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTG 189

Query: 837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYS 896
            + +  Y++PE       + K DI+  GLIL +LL    P         ++ +     + 
Sbjct: 190 QVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERVRTLTDVRNLKF- 245

Query: 897 DCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
                    P +       +  +V+ M       +  P  RP A ++
Sbjct: 246 ---------PPLFTQKYPCEYVMVQDM------LSPSPMERPEAINI 277

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 57.3 bits (137), Expect = 1e-08
 Identities = 35/207 (16%), Positives = 76/207 (36%), Gaps = 24/207 (11%)

Query: 189 SNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEI--GDLTSL--NHLDLVYNNLTGQI 244
            + +   I     +  + + ++ G  +   +    I   DL+ +      L    + G  
Sbjct: 124 CSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183

Query: 245 PPSFGNLS--NLRYLFLYQNKLTGSIPKSILG-----LKSLVSFDLSDNYLSGEIPEEVI 297
             S G     NL+ L +    L  S+ + ILG     L+ LV +   ++Y          
Sbjct: 184 NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243

Query: 298 QL------QNLEILHLFSNNFTGKIPSSLAS---MPKLQVLQLWSNQFSGE----IPSNL 344
            L       NL+ L +        +         +P+L+ + + +   + E    +  ++
Sbjct: 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV 303

Query: 345 GKQNNLTVIDLSTNFLTGKIPETLCDS 371
            K  +L  I++  N+L+ ++ + L  S
Sbjct: 304 DKIKHLKFINMKYNYLSDEMKKELQKS 330

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.3 bits (119), Expect = 2e-06
 Identities = 18/132 (13%), Positives = 43/132 (32%), Gaps = 18/132 (13%)

Query: 462 DSFGSDQLENLDLSENRFSGTIPRSFG--RLSELMQLKI---SRNKLFGDIPEELS---- 512
                  L++L++       ++        L  L +L +     +  F            
Sbjct: 188 GKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247

Query: 513 --SCKKLVSLDLSNNQLSGHIPASLSEMPVLGQL---DLSENQLSGK----IPQTLGRVA 563
                 L  L + + +    +     E  +L QL   D+S   L+ +    +   + ++ 
Sbjct: 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK 307

Query: 564 SLVQVNISHNHF 575
            L  +N+ +N+ 
Sbjct: 308 HLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.4 bits (114), Expect = 8e-06
 Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 83  HLPHVESINLSSNQLSGEIPSDIFSSS--NSLRFLNLSNNNFT--GPVPI----GSLSRL 134
             P+++ + +   +    +      S     L  +++S    T  G   +      +  L
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309

Query: 135 EILDLSNNMLSGKIPEEIGS 154
           + +++  N LS ++ +E+  
Sbjct: 310 KFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 2e-05
 Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 17/106 (16%)

Query: 83  HLPHVESINL---SSNQLSGEIPSDI---FSSSN--SLRFLNLSNNNFTGPVPIG----- 129
            LP++E + L     +       +     FS     +L++L + +      V        
Sbjct: 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD 276

Query: 130 SLSRLEILDLSNNMLSGK----IPEEIGSFSGLKVLDLGGNVLVGE 171
            L +LE +D+S  +L+ +    + + +     LK +++  N L  E
Sbjct: 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 5e-05
 Identities = 35/217 (16%), Positives = 73/217 (33%), Gaps = 33/217 (15%)

Query: 380 FSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQ 439
            S   +  +   L     L  +++   + +  LS      P +  L+I    L   + E 
Sbjct: 156 ISWIEQVDLSPVLDAMPLLNNLKI---KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVED 212

Query: 440 --KWEMTSLQMLNLAGNNFSGKLPDSFGSD-----------QLENLDLSENRFSGTIPRS 486
               ++ +L+ L L          D   +             L+ L + +      +   
Sbjct: 213 ILGSDLPNLEKLVLYVGV-EDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271

Query: 487 FGR---LSELMQLKISRNKLFGD-----IPEELSSCKKLVSLDLSNNQLSGHIPASLSEM 538
           F     L +L  + IS   L  D     + + +   K L  +++  N LS  +   L + 
Sbjct: 272 FLESDILPQLETMDISAGVL-TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330

Query: 539 -PVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNH 574
            P+   +D+S++Q              + ++   H+H
Sbjct: 331 LPMK--IDVSDSQ----EYDDDYSYPMITELEHHHHH 361

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 45/265 (16%), Positives = 80/265 (30%), Gaps = 53/265 (20%)

Query: 700 YKVRSLANDMQFVVKKII--DVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAY 757
           +KVRS  +   + VK+ +         +    +V    K+  HP  VRL          Y
Sbjct: 74  FKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILY 133

Query: 758 LVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI 813
           L  E      L +        L   +          AL  LH   S  +V  DV P  + 
Sbjct: 134 LQTELCGP-SLQQHCEAWGASLPEAQVWGYLRDTLLALAHLH---SQGLVHLDVKPANIF 189

Query: 814 VDGKDEPHLRLSVPGLAYCTD---SKSINSSA----------YVAPETKESKDITEKGDI 860
           +  +     +L         D      + ++           Y+APE  +        D+
Sbjct: 190 LGPRG--RCKL--------GDFGLLVELGTAGAGEVQEGDPRYMAPELLQGS-YGTAADV 238

Query: 861 YGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIV 920
           +  GL ++++           G  + + +                P     +SS      
Sbjct: 239 FSLGLTILEVACNMELPHGGEGWQQ-LRQ------GYLP------PEFTAGLSS------ 279

Query: 921 EIMNLALHCTAGDPTARPCASDVTK 945
           E+ ++ +     DP  R  A  +  
Sbjct: 280 ELRSVLVMMLEPDPKLRATAEALLA 304

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 56.8 bits (138), Expect = 1e-08
 Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 13/162 (8%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWERR-RKVAIGIAKALR 792
           K I H NIV L  +  S    YLV + + G EL +  + R +  E+    V   +  A++
Sbjct: 61  KKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVK 120

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTDSKSINSSA----YVAPE 847
           +LH +    +V  D+ P  ++    +E   + ++  GL+    +  ++++     YVAPE
Sbjct: 121 YLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPE 177

Query: 848 TKESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESI 887
               K  ++  D +  G+I   LL G  P   + +  + E I
Sbjct: 178 VLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKI 219

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 10/139 (7%)

Query: 294 EEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVI 353
               + + +E LH        K+ ++L+++   + L L +N    +I S+L    NL ++
Sbjct: 20  VVATEAEKVE-LHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRIL 75

Query: 354 DLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLS--GE 411
            L  N +  KI      + +L +L +  N +   +   +    +LR + + NN+++  GE
Sbjct: 76  SLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGE 132

Query: 412 LSSEFTRLPLVYFLDISGN 430
           +      L  +  L ++GN
Sbjct: 133 IDK-LAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 38/184 (20%), Positives = 64/184 (34%), Gaps = 56/184 (30%)

Query: 376 KLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGR 435
           +L      +E K+  +LST K+ + + L  N +                  IS   LSG 
Sbjct: 29  ELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE----------------KISS--LSG- 68

Query: 436 IGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQ 495
                  M +L++L+L  N           +D LE L +S N+ +               
Sbjct: 69  -------MENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA--------------- 106

Query: 496 LKISRNKLFGDIPEELSSCKKLVSLDLSNNQLS--GHIPASLSEMPVLGQLDLSENQLSG 553
             +            +     L  L +SNN+++  G I   L+ +  L  L L+ N L  
Sbjct: 107 -SL----------SGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYN 154

Query: 554 KIPQ 557
              +
Sbjct: 155 DYKE 158

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 20/94 (21%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 83  HLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNN 142
            + ++  ++L  N +  +I  ++ + +++L  L +S N       I  L  L +L +SNN
Sbjct: 68  GMENLRILSLGRNLIK-KI-ENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNN 125

Query: 143 MLSG-KIPEEIGSFSGLKVLDLGGNVLVGEIPLS 175
            ++     +++ +   L+ L L GN L  +   +
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 39/213 (18%), Positives = 70/213 (32%), Gaps = 67/213 (31%)

Query: 130 SLSRLEILDLSNNMLS-GKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLA 188
             +  E ++L   +    K+   + +    K L L  N        +I  I+SL      
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN--------NIEKISSLS----- 67

Query: 189 SNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSF 248
                         + NL+ + LG N +  +I        +L  L + YN +        
Sbjct: 68  -------------GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA------- 106

Query: 249 GNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLS--GEIPEEVIQLQNLEILH 306
            +LS +                    L +L    +S+N ++  GEI +++  L  LE L 
Sbjct: 107 -SLSGIE------------------KLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLL 146

Query: 307 LFSNNFTGKIPSS----------LASMPKLQVL 329
           L  N        +          +  +P L+ L
Sbjct: 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 33/157 (21%), Positives = 67/157 (42%), Gaps = 16/157 (10%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWERR-RKVAIGIAKALR 792
           K + HP I+++       +  Y+V E +EG EL +  V      E   +     +  A++
Sbjct: 195 KKLNHPCIIKIKNFF-DAEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQ 253

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEP-HLRLSVPGLAYCTDSKSI-----NSSAYVAP 846
           +LH +    ++  D+ P  V++  ++E   ++++  G +      S+      +  Y+AP
Sbjct: 254 YLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAP 310

Query: 847 E---TKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           E   +  +       D +  G+IL   L+G  P    
Sbjct: 311 EVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH 347

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 49/269 (18%), Positives = 94/269 (34%), Gaps = 18/269 (6%)

Query: 50  CK-WNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSS 108
           CK W  ++   S     ++L+ KN+   ++  +        I     +   + P     S
Sbjct: 36  CKRWYRLASDESLWQT-LDLTGKNLHPDVTGRLLSQ---GVIAFRCPRSFMDQPLAEHFS 91

Query: 109 SNSLRFLNLSNNNFT---GPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGG 165
              ++ ++LSN+          +   S+L+ L L    LS  I   +   S L  L+L G
Sbjct: 92  PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151

Query: 166 NVLVGEIPLS--ISNITSLQIFTLASNQLIG--SIPREIGQL-RNLKWIYLG--YNNLSG 218
                E  L   +S+ + L    L+         +   +  +   +  + L     NL  
Sbjct: 152 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 211

Query: 219 EIPKEIGD-LTSLNHLDLVY-NNLTGQIPPSFGNLSNLRYLFLYQ-NKLTGSIPKSILGL 275
                +     +L HLDL     L       F  L+ L++L L +   +       +  +
Sbjct: 212 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271

Query: 276 KSLVSFDLSDNYLSGEIPEEVIQLQNLEI 304
            +L +  +      G +      L +L+I
Sbjct: 272 PTLKTLQVFGIVPDGTLQLLKEALPHLQI 300

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 34/170 (20%), Positives = 66/170 (38%), Gaps = 17/170 (10%)

Query: 392 LSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISG----NDLS-GRIGEQKWEMTSL 446
           LS C  L+ + L+  RLS  + +   +   +  L++SG    ++ +   +       + L
Sbjct: 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS---CSRL 170

Query: 447 QMLNLAG----NNFSGKLPDSFGSDQLENLDLSENRFS---GTIPRSFGRLSELMQLKIS 499
             LNL+          ++  +  S+ +  L+LS  R +     +     R   L+ L +S
Sbjct: 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230

Query: 500 RNKLFGDIP-EELSSCKKLVSLDLSN-NQLSGHIPASLSEMPVLGQLDLS 547
            + +  +   +E      L  L LS    +       L E+P L  L + 
Sbjct: 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 44/270 (16%), Positives = 91/270 (33%), Gaps = 58/270 (21%)

Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHG----------- 748
           +K +   +   +V+K++             +V    KL  H NIV  +G           
Sbjct: 28  FKAKHRIDGKTYVIKRV----KYNNEKAEREVKALAKL-DHVNIVHYNGCWDGFDYDPET 82

Query: 749 -----VCRSEKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHC 798
                     K  ++  E+ +   L + +       L      ++   I K + ++H   
Sbjct: 83  SSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH--- 139

Query: 799 SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA-----YVAPETKESKD 853
           S  ++  D+ P  + +       +++   GL     +    + +     Y++PE   S+D
Sbjct: 140 SKKLINRDLKPSNIFLVDTK--QVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQD 197

Query: 854 ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS 913
             ++ D+Y  GLIL +LL     A         +                 D  I     
Sbjct: 198 YGKEVDLYALGLILAELLHVCDTAFETSKFFTDL----------------RDGIISDIFD 241

Query: 914 SIQNEIVEIMNLALHCTAGDPTARPCASDV 943
             +  +++ + L+       P  RP  S++
Sbjct: 242 KKEKTLLQKL-LSK-----KPEDRPNTSEI 265

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 57/389 (14%), Positives = 113/389 (29%), Gaps = 76/389 (19%)

Query: 166 NVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIG 225
             ++ ++   I N+ +L+       +L     + +     L  ++  Y   +     E+ 
Sbjct: 12  RAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEV- 70

Query: 226 DLTSLNHLDLVYNNLTGQIPPSFG-----NLSNLRYLFLYQNKLTGSIPKSIL-GLKSLV 279
            L+SL  L+L    +T                 L  + L   +L  +  +++L       
Sbjct: 71  -LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129

Query: 280 SFDLSDNYLSGEIPE---EVIQLQN--LEILHLFSNNFTGK----IPSSLASMPKLQVLQ 330
              L  N L  E  +   +++      +  L L +N  T      +   LA    +  L 
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS 189

Query: 331 LWSNQFSGE----IPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEG 386
           L       E    + + L +   L  ++++ N           D+ +L            
Sbjct: 190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG--------DTAALA----------- 230

Query: 387 KIPNSLSTCKSLRRVRLQNNRLS-------GELSSEFTRLPLVYFLDISGNDLSGRIGEQ 439
            +  +     SL  + L  N LS        +L         V      G  +S      
Sbjct: 231 -LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS------ 283

Query: 440 KWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKIS 499
             E  S+ +  +  N  S          +L   DL ++R +   P    +L         
Sbjct: 284 --EYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQL--------- 332

Query: 500 RNKLFGDIPEELSSCKKLVSLDLSNNQLS 528
                      L    ++ +L        
Sbjct: 333 -----------LRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 48/333 (14%), Positives = 98/333 (29%), Gaps = 61/333 (18%)

Query: 84  LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIG----------SLSR 133
           LP  E ++        +         +SLR LNL+    T   P+               
Sbjct: 46  LPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMT---PVKCTVVAAVLGSGRHA 102

Query: 134 LEILDLSNNMLSGKIPEEIGS-FSGLKVLDLGGNVL--VGEIPLS---ISNITSLQIFTL 187
           L+ ++L++  L       +   F   + L L  N L       L    + +   +    L
Sbjct: 103 LDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRL 162

Query: 188 ASNQL----IGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDL----TSLNHLDLVYNN 239
           ++N L    +  +   +    ++  + L +  L  E  + +         L  L++ YN 
Sbjct: 163 SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222

Query: 240 LTGQIPPSFGNL----SNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEE 295
                  +         +L  L LY N+L+        G + L            ++   
Sbjct: 223 AGDTAALALARAAREHPSLELLHLYFNELSSE------GRQVL-----------RDLGGA 265

Query: 296 VIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDL 355
                 + +        +      L+ +   + L  W           + +   L + DL
Sbjct: 266 AEGGARVVVSLTEGTAVSEYWSVILSEV--QRNLNSWDRA-------RVQRHLELLLRDL 316

Query: 356 STNFLT----GKIPETLCDSGSLFKLILFSNSL 384
             +        +  + L   G +  L+    S 
Sbjct: 317 EDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.0 bits (125), Expect = 6e-07
 Identities = 60/377 (15%), Positives = 106/377 (28%), Gaps = 78/377 (20%)

Query: 238 NNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVI 297
             +  Q+     NL  L      + KL     + +   + L        + +     EV 
Sbjct: 12  RAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEV- 70

Query: 298 QLQNLEILHLFSNNFTGKIPSSLASM-----PKLQVLQLWSNQFSGEIPSNLGKQN-NLT 351
            L +L  L+L     T    + +A++       L  + L S Q        L        
Sbjct: 71  -LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129

Query: 352 VIDLSTNFLTGKIPETLCD-----SGSLFKLILFSNSLEGK----IPNSLSTCKSLRRVR 402
            + L  N L  +  + L D        +  L L +N L       +   L+   S+  + 
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS 189

Query: 403 LQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGK--- 459
           L +  L                 D     L+ ++         LQ LN+A N        
Sbjct: 190 LLHTGLG----------------DEGLELLAAQLDRN----RQLQELNVAYNGAGDTAAL 229

Query: 460 -LPDSFGSDQ-LENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKL 517
            L  +      LE L L  N  S       GR            ++  D+        ++
Sbjct: 230 ALARAAREHPSLELLHLYFNELSSE-----GR------------QVLRDLGGAAEGGARV 272

Query: 518 VSLDLSNNQLSGHIPASLSEM---------------PVLGQLDLSENQLSGKIPQTLGRV 562
           V        +S +    LSE+                 L   DL +++ +   P    ++
Sbjct: 273 VVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQL 332

Query: 563 ----ASLVQVNISHNHF 575
                 +  +       
Sbjct: 333 LRVEGEVRALLEQLGSS 349

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 15/163 (9%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWERR-RKVAIGIAKALR 792
           K + HPNI++L  +     + Y+V E   G EL +  + R    E    ++   +   + 
Sbjct: 76  KKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGIT 135

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLA-YCTDSKSINSSA----YVAP 846
           ++H H   ++V  D+ P  ++++ K++   +++   GL+     +  +        Y+AP
Sbjct: 136 YMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAP 192

Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESI 887
           E        EK D++  G+IL  LL+G  P     ++ + + +
Sbjct: 193 EVLR-GTYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRV 234

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 46/275 (16%), Positives = 92/275 (33%), Gaps = 52/275 (18%)

Query: 700 YKVRSLANDMQFVVKKII--DVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAY 757
           +K     +   + +K+       ++   +   +V     L  H ++VR       +    
Sbjct: 28  FKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHML 87

Query: 758 LVYEYIEGKELSEVLRNLSWERR-------RKVAIGIAKALRFLHFHCSPSVVAGDVSPG 810
           +  EY  G  L++ +               + + + + + LR++H   S S+V  D+ P 
Sbjct: 88  IQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIKPS 144

Query: 811 KVIVDGKDEPHLRLSVPGLAYCTDSKSI-----------NSSA--------YVAPE-TKE 850
            + +     P+             +K +            SS         ++A E  +E
Sbjct: 145 NIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQE 204

Query: 851 SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG 910
           +     K DI+   L ++     +         HE I +          L     P I  
Sbjct: 205 NYTHLPKADIFALALTVVCAAGAEPLPRNGDQWHE-IRQ--------GRL-----PRIPQ 250

Query: 911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK 945
            +S    E++++M   +H    DP  RP A  + K
Sbjct: 251 VLSQEFTELLKVM---IHP---DPERRPSAMALVK 279

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 58  QNSTHVNAIELS-AKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLN 116
           +  + V  + L  +++  GK+         +E ++  +  L+  I        N L+ L 
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLE 70

Query: 117 LSNNNFTG--PVPIGSLSRLEILDLSNNMLSG-KIPEEIGSFSGLKVLDLGGN 166
           LS+N  +G   V       L  L+LS N +      E +     LK LDL   
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 7/130 (5%)

Query: 205 NLKWIYL-GYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNK 263
           ++K + L    +  G++     +   L  L  +   LT  I  +   L+ L+ L L  N+
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELSDNR 75

Query: 264 LTGSIPKSILGLKSLVSFDLSDNYLSG-EIPEEVIQLQNLEILHLFSNNFTGKI---PSS 319
           ++G +        +L   +LS N +      E + +L+NL+ L LF+   T       + 
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENV 135

Query: 320 LASMPKLQVL 329
              +P+L  L
Sbjct: 136 FKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.2 bits (123), Expect = 9e-08
 Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 30/139 (21%)

Query: 130 SLSRLEILDLSNNMLS-GKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLA 188
           + S ++ L L N+  + GK+      F  L+ L                 +TS+      
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-----------GLTSIANL--- 60

Query: 189 SNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLT--GQIPP 246
                        +L  LK + L  N +SG +        +L HL+L  N +     I P
Sbjct: 61  ------------PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP 108

Query: 247 SFGNLSNLRYLFLYQNKLT 265
               L NL+ L L+  ++T
Sbjct: 109 -LKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 3/107 (2%)

Query: 86  HVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLS 145
            V+ + L +++ +      +      L FL+  N   T    +  L++L+ L+LS+N +S
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVS 77

Query: 146 GKIPEEIGSFSGLKVLDLGGNVL--VGEIPLSISNITSLQIFTLASN 190
           G +         L  L+L GN +  +  I   +  + +L+   L + 
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 467 DQLENLDLSENRFS-GTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNN 525
             ++ L L  +R + G +        EL  L      L   I   L    KL  L+LS+N
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSI-ANLPKLNKLKKLELSDN 74

Query: 526 QLSGHIPASLSEMPVLGQLDLSENQLSG-KIPQTLGRVASLVQVNISHN 573
           ++SG +     + P L  L+LS N++      + L ++ +L  +++ + 
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 108 SSNSLRFLNLSNNNFTGPVPIG---SLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLG 164
           + + ++ L L N+        G       LE L   N  L+  I   +   + LK L+L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 165 GNVLVGEIPLSISNITSLQIFTLASNQL--IGSIPREIGQLRNLKWIYLGYN 214
            N + G + +      +L    L+ N++  + +I   + +L NLK + L   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 16/105 (15%)

Query: 381 SNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQK 440
           S S EGK+       + L  +   N  L+  +++   +L  +  L++S N +SG +    
Sbjct: 27  SRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLEVLA 84

Query: 441 WEMTSLQMLNLAGNNFS--------GKLPDSFGSDQLENLDLSEN 477
            +  +L  LNL+GN            KL        L++LDL   
Sbjct: 85  EKCPNLTHLNLSGNKIKDLSTIEPLKKLE------NLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 489 RLSELMQLKISRNKL-FGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLS 547
             S++ +L +  ++   G +       ++L  L   N  L+  I A+L ++  L +L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 548 ENQLSGKIPQTLGRVASLVQVNISHNHF 575
           +N++SG +     +  +L  +N+S N  
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 348 NNLTVIDLSTNFLT-GKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNN 406
           +++  + L  +    GK+     +   L  L   +  L   I N L     L+++ L +N
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDN 74

Query: 407 RLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKW--EMTSLQMLNLAGN 454
           R+SG L     + P +  L++SGN +   +   +   ++ +L+ L+L   
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 290 GEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNN 349
           G++     + + LE L   +   T  I ++L  + KL+ L+L  N+ SG +     K  N
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89

Query: 350 LTVIDLSTNFLTG-KIPETLCDSGSLFKLILFSN 382
           LT ++LS N +      E L    +L  L LF+ 
Sbjct: 90  LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 45/287 (15%), Positives = 96/287 (33%), Gaps = 55/287 (19%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV-- 749
           G+       K R+  +   + +K  I       S+   +V     L  H  +VR +    
Sbjct: 15  GQGAFGQVVKARNALDSRYYAIK-KIRHTEEKLSTILSEVMLLASL-NHQYVVRYYAAWL 72

Query: 750 -----------CRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFL 794
                       + +   ++  EY E   L +++ +       +   ++   I +AL ++
Sbjct: 73  ERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYI 132

Query: 795 H---------------FHCSPSVVAGD--VSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS 837
           H                  S +V  GD  ++  K +    D   L       +    + +
Sbjct: 133 HSQGIIHRDLKPMNIFIDESRNVKIGDFGLA--KNVHRSLDILKLDSQNLPGSSDNLTSA 190

Query: 838 INSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYS 896
           I ++ YVA E  +      EK D+Y  G+I  +++   S       + + +       + 
Sbjct: 191 IGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRS-VSIEF- 248

Query: 897 DCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
                    P    +   ++ +I+ ++ +       DP  RP A  +
Sbjct: 249 --------PPDFDDNKMKVEKKIIRLL-IDH-----DPNKRPGARTL 281

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 55.3 bits (134), Expect = 3e-08
 Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 18/163 (11%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHF 796
           HP  V+L+   + ++  Y    Y +  EL + +R          R     I  AL +LH 
Sbjct: 89  HPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH- 147

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA--------YVAPET 848
                ++  D+ P  ++++  ++ H++++  G A     +S  + A        YV+PE 
Sbjct: 148 --GKGIIHRDLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPEL 203

Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
              K   +  D++  G I+  L+ G  P  A  ++ + + I++
Sbjct: 204 LTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK 246

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 31/186 (16%), Positives = 65/186 (34%), Gaps = 25/186 (13%)

Query: 712 VVKKIIDVNTITTSSFWPDVSQFG---------KLIMHPNIVRLHGVCRSEKAAYLVYE- 761
           VV K I    +     W +  + G           + H NI+++  +  ++    LV E 
Sbjct: 52  VVVKFIKKEKVLEDC-WIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQGFFQLVMEK 110

Query: 762 YIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD 818
           +  G +L   +     L       +   +  A+ +L       ++  D+    +++    
Sbjct: 111 HGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKD---IIHRDIKDENIVIAEDF 167

Query: 819 EPHLRLSVPGL-AYCTDSKSIN----SSAYVAPETKESKD-ITEKGDIYGFGLILIDLLT 872
              ++L   G  AY    K       +  Y APE          + +++  G+ L  L+ 
Sbjct: 168 --TIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVF 225

Query: 873 GKSPAD 878
            ++P  
Sbjct: 226 EENPFC 231

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 45/235 (19%), Positives = 86/235 (36%), Gaps = 41/235 (17%)

Query: 712 VVKKIIDVNTITTSSFWPDVSQFGKL-----IM------HPNIVRLHGVCRSEKAAYLVY 760
           V  K ++ + I+    W ++    ++     ++         ++RL        +  L+ 
Sbjct: 71  VAIKHVEKDRISD---WGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLIL 127

Query: 761 EYIEGK-ELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDG 816
           E  E   +L + +     L  E  R     + +A+R  H      V+  D+    +++D 
Sbjct: 128 ERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILID- 183

Query: 817 KDEPHLRLSVPGL-AYCTDSK---SINSSAYVAPETKESKDITEKG------DIYGFGLI 866
            +   L+L   G  A   D+       +  Y  PE      I           ++  G++
Sbjct: 184 LNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEW-----IRYHRYHGRSAAVWSLGIL 238

Query: 867 LIDLLTGKSPADADFGVHESIVEWARYCYSDC-HLDTW---VDPFIRGHVSSIQN 917
           L D++ G  P + D  +    V + +   S+C HL  W   + P  R     IQN
Sbjct: 239 LYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQN 293

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 13/151 (8%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWERR-RKVAIGIAKALR 792
               HPNIV+LH V   +   +LV E + G EL E    +    E     +   +  A+ 
Sbjct: 61  LCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKKKHFSETEASYIMRKLVSAVS 120

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLA--YCTDSKSINSSA----YVA 845
            +H      VV  D+ P  ++   +++   +++   G A     D++ + +      Y A
Sbjct: 121 HMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAA 177

Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE        E  D++  G+IL  +L+G+ P
Sbjct: 178 PELLNQNGYDESCDLWSLGVILYTMLSGQVP 208

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 22/201 (10%)

Query: 695 GVSSSYKVRSLANDM---QFVVKKIIDVNTITTSSFWPDVS---QFGKLIMHPNIVRLHG 748
           G  S  KV+ LA      Q V  K I    +  S     V     + KL+ HP+I++L+ 
Sbjct: 18  GEGSFGKVK-LATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYD 76

Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAG 805
           V  +     +V EY  G EL + +     ++ +  R+    I  A+ + H H    +V  
Sbjct: 77  VITTPTDIVMVIEYAGG-ELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRH---KIVHR 132

Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLA--YCTDSK---SINSSAYVAPETKESKDIT-EKGD 859
           D+ P  +++D     +++++  GL+      +    S  S  Y APE    K     + D
Sbjct: 133 DLKPENLLLDDNL--NVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEVD 190

Query: 860 IYGFGLILIDLLTGKSPADAD 880
           ++  G++L  +L G+ P D +
Sbjct: 191 VWSCGIVLYVMLVGRLPFDDE 211

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 54.5 bits (132), Expect = 5e-08
 Identities = 36/160 (22%), Positives = 68/160 (42%), Gaps = 27/160 (16%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALR 792
           K++ H N+V+ +G  R     YL  EY  G EL + +     +     ++    +   + 
Sbjct: 60  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVV 119

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN--------SSAYV 844
           +LH      +   D+ P  +++D +D  +L++S  GLA      +          +  YV
Sbjct: 120 YLHGI---GITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMCGTLPYV 174

Query: 845 APETKESKDITEKG------DIYGFGLILIDLLTGKSPAD 878
           APE      +  +       D++  G++L  +L G+ P D
Sbjct: 175 APEL-----LKRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 39/139 (28%), Positives = 57/139 (41%), Gaps = 28/139 (20%)

Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIF 185
           VP G  S    L+L +N L   +P   G F  L                     T L   
Sbjct: 22  VPTGIPSSATRLELESNKLQ-SLPH--GVFDKL---------------------TQLTKL 57

Query: 186 TLASNQLIGSIPREI-GQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTGQ 243
           +L+ NQ+  S+P  +  +L  L  +YL  N L   +P  + D LT L  L L  N L   
Sbjct: 58  SLSQNQI-QSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSV 115

Query: 244 IPPSFGNLSNLRYLFLYQN 262
               F  L++L+ ++L+ N
Sbjct: 116 PDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 32/132 (24%)

Query: 88  ESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIG---SLSRLEILDLSNNML 144
             + L SN+L   +P  +F     L  L+LS N     +P G    L++L IL L  N L
Sbjct: 31  TRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKL 88

Query: 145 SGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREI-GQL 203
              +P   G F  L                     T L+   L +NQL  S+P  I  +L
Sbjct: 89  Q-SLPN--GVFDKL---------------------TQLKELALDTNQL-KSVPDGIFDRL 123

Query: 204 RNLKWIYLGYNN 215
            +L+ I+L + N
Sbjct: 124 TSLQKIWL-HTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 4/110 (3%)

Query: 228 TSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDN 286
           +S   L+L  N L       F  L+ L  L L QN++  S+P  +   L  L    L +N
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHEN 86

Query: 287 YLSGEIPEEVI-QLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQ 335
            L   +P  V  +L  L+ L L +N            +  LQ + L +N 
Sbjct: 87  KLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.1 bits (125), Expect = 7e-08
 Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 222 KEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSF 281
           +    +  L  LD   +N  G+I        NL +L L    L  S+  ++  L  L   
Sbjct: 21  RTPAAVRELV-LDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKL 76

Query: 282 DLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTG-KIPSSLASMPKLQVLQLWSN 334
           +LS+N + G +     +L NL  L+L  N          L  +  L+ L L++ 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 7/113 (6%)

Query: 58  QNSTHVNAIELS-AKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLN 116
           +    V  + L   K+  GKI        ++E ++L +  L   +          L+ L 
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV--SNLPKLPKLKKLE 77

Query: 117 LSNNNFTG--PVPIGSLSRLEILDLSNNMLSG-KIPEEIGSFSGLKVLDLGGN 166
           LS N   G   +    L  L  L+LS N L      E +     LK LDL   
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 87  VESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSG 146
           V  + L + + +      + +   +L FL+L N        +  L +L+ L+LS N + G
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFG 85

Query: 147 KIPEEIGSFSGLKVLDLGGNVL--VGEIPLSISNITSLQIFTLASNQL 192
            +         L  L+L GN L  +  +   +  +  L+   L + ++
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%)

Query: 424 FLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTI 483
            LD   ++  G+I     E  +L+ L+L        + +     +L+ L+LSENR  G +
Sbjct: 30  VLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSENRIFGGL 87

Query: 484 PRSFGRLSELMQLKISRNKL--FGDIPEELSSCKKLVSLDLSNNQLS 528
                +L  L  L +S NKL     + E L   + L SLDL N +++
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 13/141 (9%)

Query: 154 SFSGLKVLDLGGNVL-VGEIPLSISNITSLQIFTLASNQL--IGSIPREIGQLRNLKWIY 210
           + + ++ L L       G+I    +   +L+  +L +  L  + ++P+    L  LK + 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK----LPKLKKLE 77

Query: 211 LGYNNLSGEIPKEIGDLTSLNHLDLVYNNLT--GQIPPSFGNLSNLRYLFLYQN---KLT 265
           L  N + G +      L +L HL+L  N L     + P    L  L+ L L+      L 
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNCEVTNLN 136

Query: 266 GSIPKSILGLKSLVSFDLSDN 286
                    L  L   D  D 
Sbjct: 137 DYRESVFKLLPQLTYLDGYDR 157

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 11/135 (8%)

Query: 108 SSNSLRFLNLSNNNFTGPVPIG---SLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLG 164
           +  ++R L L N         G       LE L L N  L   +   +     LK L+L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79

Query: 165 GNVLVGEIPLSISNITSLQIFTLASNQL--IGSIPREIGQLRNLKWIYLGYN---NLSGE 219
            N + G + +    + +L    L+ N+L  I ++   + +L  LK + L      NL+  
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVTNLNDY 138

Query: 220 IPKEIGDLTSLNHLD 234
                  L  L +LD
Sbjct: 139 RESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 4/111 (3%)

Query: 465 GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSN 524
           GS     +D+          R+   + EL  L   ++   G I    +    L  L L N
Sbjct: 1   GSSGSSGMDMKRRIHLELRNRTPAAVREL-VLDNCKSND-GKIEGLTAEFVNLEFLSLIN 58

Query: 525 NQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHF 575
             L   + ++L ++P L +L+LSEN++ G +     ++ +L  +N+S N  
Sbjct: 59  VGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 17/114 (14%)

Query: 373 SLFKLIL-FSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGND 431
           ++ +L+L    S +GKI    +   +L  + L N  L   +S+   +LP +  L++S N 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENR 82

Query: 432 LSGRIGEQKWEMTSLQMLNLAGNNFS--------GKLPDSFGSDQLENLDLSEN 477
           + G +     ++ +L  LNL+GN            KL        L++LDL   
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE------CLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 4/108 (3%)

Query: 468 QLENLDLSENRFS-GTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQ 526
            +  L L   + + G I         L  L +    L   +   L    KL  L+LS N+
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISV-SNLPKLPKLKKLELSENR 82

Query: 527 LSGHIPASLSEMPVLGQLDLSENQLSG-KIPQTLGRVASLVQVNISHN 573
           + G +     ++P L  L+LS N+L      + L ++  L  +++ + 
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 6/112 (5%)

Query: 250 NLSNLRYLFLYQNKLT-GSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLF 308
             + +R L L   K   G I        +L    L +  L   +   + +L  L+ L L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79

Query: 309 SNNFTGKIPSSLASMPKLQVLQLWSNQFS--GEIPSNLGKQNNLTVIDLSTN 358
            N   G +      +P L  L L  N+      +   L K   L  +DL   
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 290 GEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNN 349
           G+I     +  NLE L L  N     + S+L  +PKL+ L+L  N+  G +     K  N
Sbjct: 39  GKIEGLTAEFVNLEFLSL-INVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96

Query: 350 LTVIDLSTNFLT 361
           LT ++LS N L 
Sbjct: 97  LTHLNLSGNKLK 108

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 54.6 bits (132), Expect = 8e-08
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAK 789
           I+    HPNIVRL GVC  ++  Y+V E ++G +    LR     L  +   ++    A 
Sbjct: 165 ILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAA 224

Query: 790 ALRFLH 795
            + +L 
Sbjct: 225 GMEYLE 230

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 54.2 bits (131), Expect = 9e-08
 Identities = 36/160 (22%), Positives = 68/160 (42%), Gaps = 27/160 (16%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALR 792
           K++ H N+V+ +G  R     YL  EY  G EL + +     +     ++    +   + 
Sbjct: 60  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVV 119

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN--------SSAYV 844
           +LH      +   D+ P  +++D +D  +L++S  GLA      +          +  YV
Sbjct: 120 YLHGI---GITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMCGTLPYV 174

Query: 845 APETKESKDITEKG------DIYGFGLILIDLLTGKSPAD 878
           APE      +  +       D++  G++L  +L G+ P D
Sbjct: 175 APEL-----LKRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 53.8 bits (130), Expect = 9e-08
 Identities = 38/171 (22%), Positives = 77/171 (45%), Gaps = 23/171 (13%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLR-NLSWERR-RKVAIGIAKAL 791
           K+  HPNI++L     +    +LV++ ++  EL +    +  LS E+  RK+   + + +
Sbjct: 79  KVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLS-EKETRKIMRALLEVI 137

Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA----YVAP 846
             LH     ++V  D+ P  +++D  D+ +++L+  G +      + +        Y+AP
Sbjct: 138 CALHKL---NIVHRDLKPENILLD--DDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAP 192

Query: 847 ET-KESKDITEKG-----DIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
           E  + S +    G     D++  G+I+  LL G  P        +   I+ 
Sbjct: 193 EIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMS 243

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 54.6 bits (132), Expect = 9e-08
 Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 15/164 (9%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWERR-RKVAIGIAKALR 792
           +L+ HPNIVRLH     E   YL+++ + G EL E  V R    E         I +A+ 
Sbjct: 65  RLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVL 124

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLA-YCTDSKSINSSA-----YVA 845
             H      VV  ++ P  +++  K +   ++L+  GLA      +           Y++
Sbjct: 125 HCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLS 181

Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESI 887
           PE        +  D++  G+IL  LL G  P   +    +++ I
Sbjct: 182 PEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQI 225

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 27/183 (14%)

Query: 715 KIIDVNTITTSSFWPDVS---QFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEV 771
           KI++   I +      +    Q  KL  HP+I++L+ V  +    ++V EY+ G EL + 
Sbjct: 47  KILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDY 106

Query: 772 LRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPG 828
           +     L  +  R++   I   + + H H    VV  D+ P  V++D     + +++  G
Sbjct: 107 ICKNGRLDEKESRRLFQQILSGVDYCHRHM---VVHRDLKPENVLLDAHM--NAKIADFG 161

Query: 829 LA--YCTDSK---SINSSAYVAPETKESKDITEKG------DIYGFGLILIDLLTGKSPA 877
           L+           S  S  Y APE      I+ +       DI+  G+IL  LL G  P 
Sbjct: 162 LSNMMSDGEFLRTSCGSPNYAAPEV-----ISGRLYAGPEVDIWSSGVILYALLCGTLPF 216

Query: 878 DAD 880
           D D
Sbjct: 217 DDD 219

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 12/150 (8%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWERR-RKVAIGIAKALR 792
             + HPNI++L  +  +     LV E + G EL +  V +    ER        I +A+ 
Sbjct: 103 LRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVA 162

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLA-YCTDSKSINSSA----YVAP 846
           +LH +    +V  D+ P  ++         L+++  GL+        + +      Y AP
Sbjct: 163 YLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAP 219

Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           E         + D++  G+I   LL G  P
Sbjct: 220 EILRGCAYGPEVDMWSVGIITYILLCGFEP 249

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 37/211 (17%), Positives = 61/211 (28%), Gaps = 60/211 (28%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWERR------------- 780
           K + HPNI RL+ V   E+   LV E   G  L +   +       +             
Sbjct: 83  KKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPC 142

Query: 781 ----------------------------RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKV 812
                                         +   I  AL +LH      +   D+ P   
Sbjct: 143 PECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQ---GICHRDIKPENF 199

Query: 813 IVDGKDEPHLRLSVPGLAYCTDSKSIN----------SSAYVAPE--TKESKDITEKGDI 860
           +        ++L   GL+      +            +  +VAPE     ++    K D 
Sbjct: 200 LFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDA 259

Query: 861 YGFGLILIDLLTGKSP--ADADFGVHESIVE 889
           +  G++L  LL G  P     D      ++ 
Sbjct: 260 WSAGVLLHLLLMGAVPFPGVNDADTISQVLN 290

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 55/225 (24%), Positives = 86/225 (38%), Gaps = 37/225 (16%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERR-RKVAIGIAKAL 791
           +   HPNI+ L  V    K  Y+V E ++G EL + +   +  S ER    V   I K +
Sbjct: 71  RYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQKFFS-EREASAVLFTITKTV 129

Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP--GLA-YCTDSKSINSSA-----Y 843
            +LH      VV  D+ P  ++   +      + +   G A        +  +      +
Sbjct: 130 EYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANF 186

Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLTGKSP-----ADADFGVHESIVEWARYCYSDC 898
           VAPE  E +      DI+  G++L  +LTG +P      D    +   I    ++  S  
Sbjct: 187 VAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGS-GKFSLSG- 244

Query: 899 HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
               W        VS    ++V  M   LH    DP  R  A+ V
Sbjct: 245 --GYW------NSVSDTAKDLVSKM---LHV---DPHQRLTAALV 275

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 177 SNI-TSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLD 234
           + I T  Q   L +NQ+    P     L NL+ +Y   N L+  IP  + D LT L  LD
Sbjct: 29  AGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLD 87

Query: 235 LVYNNLTGQIPP-SFGNLSNLRYLFLYQN 262
           L  N+L   IP  +F NL +L +++LY N
Sbjct: 88  LNDNHLKS-IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 220 IPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILG-LKSL 278
           +P  I   T    L L  N +T   P  F +L NL+ L+   NKLT +IP  +   L  L
Sbjct: 27  VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQL 83

Query: 279 VSFDLSDNYLSGEIPEEVI-QLQNLEILHLFSN 310
              DL+DN+L   IP      L++L  ++L++N
Sbjct: 84  TQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 11/95 (11%)

Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSF---SGLKVLDLGGNVLVGEIPLSI-SNITS 181
           VP G  +  + L L+NN ++ K+    G F     L+ L    N L   IP  +   +T 
Sbjct: 27  VPAGIPTDKQRLWLNNNQIT-KLEP--GVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQ 82

Query: 182 LQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYNN 215
           L    L  N L  SIPR     L++L  IYL YNN
Sbjct: 83  LTQLDLNDNHL-KSIPRGAFDNLKSLTHIYL-YNN 115

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 177 SNI-TSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGD-LTSLNHLD 234
           + I T+ Q+  L  NQ+    P    +L  L  + L  N L+  +P  + D LT L  L 
Sbjct: 26  TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLS 84

Query: 235 LVYNNLTGQIPP-SFGNLSNLRYLFLYQN 262
           L  N L   IP  +F NL +L +++L  N
Sbjct: 85  LNDNQLKS-IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 220 IPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILG-LKSL 278
           +P  I   T+   L L  N +T   P  F  L+ L  L L  N+LT  +P  +   L  L
Sbjct: 24  VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQL 80

Query: 279 VSFDLSDNYLSGEIPEEVI-QLQNLEILHLFSN 310
               L+DN L   IP      L++L  + L +N
Sbjct: 81  TQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 11/95 (11%)

Query: 126 VPIGSLSRLEILDLSNNMLSGKIPEEIGSF---SGLKVLDLGGNVLVGEIPLSI-SNITS 181
           VP G  +  ++L L +N ++ K+    G F   + L  LDL  N L   +P  +   +T 
Sbjct: 24  VPTGIPTTTQVLYLYDNQIT-KLEP--GVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQ 79

Query: 182 LQIFTLASNQLIGSIPREI-GQLRNLKWIYLGYNN 215
           L   +L  NQL  SIPR     L++L  I+L  NN
Sbjct: 80  LTQLSLNDNQL-KSIPRGAFDNLKSLTHIWL-LNN 112

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 21/161 (13%)

Query: 736 KLIMHPNIVRLHGVCRSE--KAAYLVYEYIEG--KELSE--VLRNLSWERRRKVAIGIAK 789
           + + H N+++L  V  +E  +  Y+V EY     +E+ +    +     +       +  
Sbjct: 61  RRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLID 120

Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN--------SS 841
            L +LH      +V  D+ PG +++       L++S  G+A      + +        S 
Sbjct: 121 GLEYLHSQ---GIVHKDIKPGNLLLTTGG--TLKISALGVAEALHPFAADDTCRTSQGSP 175

Query: 842 AYVAPETKESKDITE--KGDIYGFGLILIDLLTGKSPADAD 880
           A+  PE     D     K DI+  G+ L ++ TG  P + D
Sbjct: 176 AFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGD 216

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 53/319 (16%), Positives = 112/319 (35%), Gaps = 54/319 (16%)

Query: 667 NSKVGKSLTIDEIISSTTEENLTSRGKKGVSSS---YKVRSLANDMQFVVKKIIDVNTIT 723
             ++   LT  + +    +++     + G  +    +KV    +    + +K+I +    
Sbjct: 14  RKRLEAFLTQKQKVGELKDDDFEKISELGAGNGGVVFKVSHKPSG-LVMARKLIHLE--- 69

Query: 724 TSSFWPDVSQFGKLIM---------HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN 774
                   +   ++I           P IV  +G   S+    +  E+++G  L +VL+ 
Sbjct: 70  -----IKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKK 124

Query: 775 ---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-RLSVPGLA 830
              +  +   KV+I + K L +L       ++  DV P  ++V+ + E  L    V G  
Sbjct: 125 AGRIPEQILGKVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQL 182

Query: 831 YCTDSKS-INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP-----ADADFGVH 884
             + + S + + +Y++PE  +    + + DI+  GL L+++  G+ P     A     + 
Sbjct: 183 IDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMF 242

Query: 885 ESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALH---------------- 928
              VE                    G  S     I E+++  ++                
Sbjct: 243 GCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQ 302

Query: 929 -----CTAGDPTARPCASD 942
                C   +P  R     
Sbjct: 303 DFVNKCLIKNPAERADLKQ 321

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 42/215 (19%), Positives = 81/215 (37%), Gaps = 46/215 (21%)

Query: 694 KGVSSS-YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFG------KLIMHPN--IV 744
            G SS  ++V +     Q    K +++           +  +         +   +  I+
Sbjct: 38  SGGSSKVFQVLNEKK--QIYAIKYVNLEEADNQ----TLDSYRNEIAYLNKLQQHSDKII 91

Query: 745 RLHGVCRSEKAAYLVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPS 801
           RL+    +++  Y+V E     +L+  L+   ++    R+     + +A+  +H H    
Sbjct: 92  RLYDYEITDQYIYMVMEC-GNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQH---G 147

Query: 802 VVAGDVSPGK-VIVDGKDEPHLRLSVPGLAYCTDSKSINSSA--------YVAPE----- 847
           +V  D+ P   +IVDG     L+L   G+A      + +           Y+ PE     
Sbjct: 148 IVHSDLKPANFLIVDGM----LKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDM 203

Query: 848 ------TKESKDITEKGDIYGFGLILIDLLTGKSP 876
                  K    I+ K D++  G IL  +  GK+P
Sbjct: 204 SSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTP 238

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 51.1 bits (123), Expect = 8e-07
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAK 789
           IM    HPNI+RL GV    + A +V EY+E   L   LR      +  +   +  G+  
Sbjct: 103 IMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGA 162

Query: 790 ALRFL 794
            +R+L
Sbjct: 163 GMRYL 167

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 51.8 bits (124), Expect = 8e-07
 Identities = 39/151 (25%), Positives = 59/151 (39%), Gaps = 25/151 (16%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHF 796
            P IV +     +      + + + G +L   L      S    R  A  I   L  +H 
Sbjct: 251 CPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHN 310

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA----YVAPETKESK 852
                VV  D+ P  +++D  +  H+R+S  GLA     K  ++S     Y+APE     
Sbjct: 311 R---FVVYRDLKPANILLD--EHGHVRISDLGLACDFSKKKPHASVGTHGYMAPE----- 360

Query: 853 DITEKGDIYG-------FGLILIDLLTGKSP 876
            + +KG  Y         G +L  LL G SP
Sbjct: 361 -VLQKGVAYDSSADWFSLGCMLFKLLRGHSP 390

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 51.3 bits (123), Expect = 8e-07
 Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 30/190 (15%)

Query: 715 KIIDVNTITTSSFWPDVSQFG---------KLIMHPNIVRLHGVCRSEKAAYLVYEYIEG 765
           KI++V     S    +  +           ++  HP+I+ L     S    +LV++ +  
Sbjct: 125 KIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRK 184

Query: 766 KELSE--VLR-NLSWERR-RKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPH 821
            EL +    +  LS E+  R +   + +A+ FLH +   ++V  D+ P  +++D  D   
Sbjct: 185 GELFDYLTEKVALS-EKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLD--DNMQ 238

Query: 822 LRLSVPGLA-YCTDSKSINSSA----YVAPET-KESKDITEKG-----DIYGFGLILIDL 870
           +RLS  G + +    + +        Y+APE  K S D T  G     D++  G+IL  L
Sbjct: 239 IRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTL 298

Query: 871 LTGKSPADAD 880
           L G  P    
Sbjct: 299 LAGSPPFWHR 308

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 50.7 bits (122), Expect = 8e-07
 Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 39/166 (23%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAK 789
           +M    H ++V  +GVC       LV E+++   L   L+     ++   + +VA  +A 
Sbjct: 65  MMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAA 124

Query: 790 ALRFL---HFHCSPSVVAGD-------VSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN 839
           A+ FL           + G+       +   +    G + P ++LS PG+     S ++ 
Sbjct: 125 AMHFLEENTL------IHGNVCAKNILLIREEDRKTG-NPPFIKLSDPGI-----SITVL 172

Query: 840 SSAY-------VAPET-KESKDITEKGDIYGFGLILIDLLT-GKSP 876
                      V PE  +  K++    D + FG  L ++ + G  P
Sbjct: 173 PKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKP 218

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.9 bits (124), Expect = 9e-07
 Identities = 68/481 (14%), Positives = 147/481 (30%), Gaps = 66/481 (13%)

Query: 113 RFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVL--VG 170
           RF NL +    G  P  ++  L   +    +    + E   +   LK +     ++  + 
Sbjct: 71  RFPNLRSLKLKG-KPRAAMFNLIPENWGGYVTPW-VTEISNNLRQLKSVHFRRMIVSDLD 128

Query: 171 EIPLSISNITSLQIFTLASNQLIG--SIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDL- 227
              L+ +    L+   L          +   +   R +K + +  ++ S +  K + +L 
Sbjct: 129 LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188

Query: 228 ---TSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLS 284
              TSL  L+               +  +L  +                  +SLVS  + 
Sbjct: 189 QHNTSLEVLNFYMTEFAKI------SPKDLETIAR--------------NCRSLVSVKVG 228

Query: 285 DNYLS--GEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPS 342
           D  +       +    L+      L  +    +   +L    KL  L L     +  +P 
Sbjct: 229 DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPI 287

Query: 343 NLGKQNNLTVIDLS-TNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRV 401
                  +  +DL      T      +    +L  L   +   +  +      CK L+R+
Sbjct: 288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347

Query: 402 RLQNNRLSGELSSEFTRL------------PLVYFLDISGNDLSGR----IGEQKWEMTS 445
           R++       +  E   +              + ++ +  +D++      IG     +  
Sbjct: 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407

Query: 446 LQMLNLAGNNFSGKLPDSFGSD-------QLENLDLSENRFSGTIPRSFGRLSE----LM 494
            +++ L        LP   G         +L        +   T       + +    + 
Sbjct: 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD-LGLSYIGQYSPNVR 466

Query: 495 QLKISRNKLFGD--IPEELSSCKKLVSLDLSNNQLSGH-IPASLSEMPVLGQLDLSENQL 551
            + +       D  + E    C  L  L++     S   I A+++++P L  L +   + 
Sbjct: 467 WMLLGYVGE-SDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525

Query: 552 S 552
           S
Sbjct: 526 S 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.7 bits (108), Expect = 7e-05
 Identities = 47/362 (12%), Positives = 99/362 (27%), Gaps = 56/362 (15%)

Query: 13  LSFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKN 72
           +        EL       + + +      N D  +     N +  +    +    +    
Sbjct: 225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284

Query: 73  ISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLS 132
           +             +  ++L    L  E    +     +L  L   N             
Sbjct: 285 MPILFP----FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV------------ 328

Query: 133 RLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQL 192
              I D    +L+    +       LK L +        +      ++   +  LA    
Sbjct: 329 ---IGDRGLEVLAQYCKQ-------LKRLRIERGADEQGMEDEEGLVSQRGLIALAQG-- 376

Query: 193 IGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIG----DLTSLNHLDLVYNNLTGQIPPSF 248
                      + L+++ +  ++++ E  + IG    +L     + L        +P   
Sbjct: 377 ----------CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426

Query: 249 G------NLSNLRYLFLYQN--KLTGSIPKSIL-GLKSLVSFDLSDNYLSGEIPEEVIQ- 298
           G          LR    Y     LT      I     ++    L     S E   E  + 
Sbjct: 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG 486

Query: 299 LQNLEILHLFSNNFTGKIPSSLA-SMPKLQVLQLWSNQFSGEIPSNLGKQN---NLTVID 354
             NL+ L +    F+ +  ++    +P L+ L +   + S      +       N+ +I 
Sbjct: 487 CPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546

Query: 355 LS 356
             
Sbjct: 547 SR 548

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 23/165 (13%)

Query: 738 IMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFL 794
           +  P +V+L    +     Y+V EY+ G E+   LR     S    R  A  I     +L
Sbjct: 98  VNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYL 157

Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA--------YVAP 846
           H      ++  D+ P  +++D   + +++++  G A     K +             +AP
Sbjct: 158 HSL---DLIYRDLKPENLLID--QQGYIQVTDFGFA-----KRVKGRTWTLCGTPEALAP 207

Query: 847 ETKESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
           E   SK   +  D +  G+++ ++  G  P  AD    ++E IV 
Sbjct: 208 EIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVS 252

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 23/153 (15%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEG---KELSEVLRNLSWERRRKVAIGIAKALR 792
           K + H N+V L  VC+ +K  YLV+E+++     +L      L ++  +K    I   + 
Sbjct: 79  KQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIG 138

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYV------AP 846
           F H H   +++  D+ P  ++V       ++L   G A    +        V      AP
Sbjct: 139 FCHSH---NIIHRDIKPENILVSQSGV--VKLCDFGFARTLAAPGEVYDDEVATRWYRAP 193

Query: 847 E-----TKESKDITEKGDIYGFGLILIDLLTGK 874
           E      K  K +    D++  G ++ ++  G+
Sbjct: 194 ELLVGDVKYGKAV----DVWAIGCLVTEMFMGE 222

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 42/215 (19%), Positives = 80/215 (37%), Gaps = 46/215 (21%)

Query: 694 KGVSSS-YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFG------KLIMHPN--IV 744
            G SS  ++V +     Q    K +++           +  +         +   +  I+
Sbjct: 19  SGGSSKVFQVLNEKK--QIYAIKYVNLEEADNQ----TLDSYRNEIAYLNKLQQHSDKII 72

Query: 745 RLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPS 801
           RL+    +++  Y+V E     +L+  L+    +    R+     + +A+  +H H    
Sbjct: 73  RLYDYEITDQYIYMVMECGNI-DLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQH---G 128

Query: 802 VVAGDVSPGK-VIVDGKDEPHLRLSVPGLAYCTDSKSINSSA--------YVAPE----- 847
           +V  D+ P   +IVDG     L+L   G+A      + +           Y+ PE     
Sbjct: 129 IVHSDLKPANFLIVDGM----LKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDM 184

Query: 848 ------TKESKDITEKGDIYGFGLILIDLLTGKSP 876
                  K    I+ K D++  G IL  +  GK+P
Sbjct: 185 SSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTP 219

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 43/193 (22%), Positives = 78/193 (40%), Gaps = 25/193 (12%)

Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVC----RSEKA 755
            ++ +     +F +K + D           +V    +    P+IVR+  V        K 
Sbjct: 79  LQIFNKRTQEKFALKMLQDCPKARR-----EVELHWRASQCPHIVRIVDVYENLYAGRKC 133

Query: 756 AYLVYEYIEGKEL-----SEVLRNLSWERR-RKVAIGIAKALRFLHFHCSPSVVAGDVSP 809
             +V E ++G EL         +  + ER   ++   I +A+++LH     ++   DV P
Sbjct: 134 LLIVMECLDGGELFSRIQDRGDQAFT-EREASEIMKSIGEAIQYLHSI---NIAHRDVKP 189

Query: 810 GKVIVDGKDE-PHLRLSVPGLA-YCTDSKSINSSA----YVAPETKESKDITEKGDIYGF 863
             ++   K     L+L+  G A   T   S+ +      YVAPE    +   +  D++  
Sbjct: 190 ENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSL 249

Query: 864 GLILIDLLTGKSP 876
           G+I+  LL G  P
Sbjct: 250 GVIMYILLCGYPP 262

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 20/152 (13%)

Query: 736 KLIMHPNIVRLHGVCRSEKAA------YLVYEYIEGKELSEVLR-NLSWERRRKVAIGIA 788
           K + H NI+ L  V   +K+       Y+V E ++   L +V++  L  ER   +   + 
Sbjct: 79  KCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMD-ANLCQVIQMELDHERMSYLLYQML 137

Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYV---- 844
             ++ LH   S  ++  D+ P  ++V    +  L++   GLA    + S   + YV    
Sbjct: 138 CGIKHLH---SAGIIHRDLKPSNIVVK--SDCTLKILDFGLARTAGT-SFMMTPYVVTRY 191

Query: 845 --APETKESKDITEKGDIYGFGLILIDLLTGK 874
             APE        E  DI+  G I+ +++ G 
Sbjct: 192 YRAPEVILGMGYKENVDIWSVGCIMGEMIKGG 223

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAK 789
           IM    H NI+RL GV    K   ++ EY+E   L + LR      S  +   +  GIA 
Sbjct: 99  IMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAA 158

Query: 790 ALRFL 794
            +++L
Sbjct: 159 GMKYL 163

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 33/166 (19%)

Query: 736 KLIMHPN--IVRLHGVCRSEKAAYLVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKA 790
             +   +  I+RL+    +++  Y+V E     +L+  L+   ++    R+     + +A
Sbjct: 109 NKLQQHSDKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLKKKKSIDPWERKSYWKNMLEA 167

Query: 791 LRFLHFHCSPSVVAGDVSPGK-VIVDGKDEPHLRLSVPGLA--YCTDSKSIN------SS 841
           +  +H H    +V  D+ P   +IVDG     L+L   G+A     D+ S+       + 
Sbjct: 168 VHTIHQH---GIVHSDLKPANFLIVDGM----LKLIDFGIANQMQPDTTSVVKDSQVGAV 220

Query: 842 AYVAPE-----------TKESKDITEKGDIYGFGLILIDLLTGKSP 876
            Y+ PE            K    I+ K D++  G IL  +  GK+P
Sbjct: 221 NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTP 266

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 45/222 (20%), Positives = 68/222 (30%), Gaps = 71/222 (31%)

Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV 759
               +L    ++ VK I        S  + +V    +   H N++ L      E   YLV
Sbjct: 30  QTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLV 89

Query: 760 YEYIEGKEL---------------SEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVV- 803
           +E + G  +               S V+++            +A AL FLH      +  
Sbjct: 90  FEKMRGGSILSHIHKRRHFNELEASVVVQD------------VASALDFLHNK---GIAH 134

Query: 804 ------------AGDVSPGKVI-----------VDGKDEPHLRLSVP-GLAYCTDSKSIN 839
                          VSP K+             D        L  P G A         
Sbjct: 135 RDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAE-------- 186

Query: 840 SSAYVAPETKESKDITEKG-----DIYGFGLILIDLLTGKSP 876
              Y+APE  E+            D++  G+IL  LL+G  P
Sbjct: 187 ---YMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPP 225

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 53/249 (21%), Positives = 102/249 (40%), Gaps = 67/249 (26%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIA 788
           +M    HPN+V+L GVC  E   Y++ E++    L + LR      +S      +A  I+
Sbjct: 269 VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQIS 328

Query: 789 KALRFL---HF-HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYV 844
            A+ +L   +F H        +++    +V   +   ++++  GL+     + +    Y 
Sbjct: 329 SAMEYLEKKNFIHR-------NLAARNCLVG--ENHLVKVADFGLS-----RLMTGDTYT 374

Query: 845 ------------APETKESKDITEKGDIYGFGLILIDLLT-GKSP----ADADFGVHESI 887
                       APE+      + K D++ FG++L ++ T G SP      +   V+E +
Sbjct: 375 AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ--VYELL 432

Query: 888 VEWAR-YCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT 946
            +  R      C       P           ++ E+M     C   +P+ RP  +++ + 
Sbjct: 433 EKDYRMERPEGC-------P----------EKVYELM---RACWQWNPSDRPSFAEIHQA 472

Query: 947 LESCFRISS 955
            E+ F+ SS
Sbjct: 473 FETMFQESS 481

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAK 789
            M    HP +V+ +GVC  E   Y+V EYI    L   LR+    L   +  ++   + +
Sbjct: 56  TMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCE 115

Query: 790 ALRFL 794
            + FL
Sbjct: 116 GMAFL 120

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 16/157 (10%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSE--VLRNLSWERR-RKVAIGIAKALR 792
           K + HP I+++     +E   Y+V E +EG EL +  V      E   +     +  A++
Sbjct: 70  KKLNHPCIIKIKNFFDAED-YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQ 128

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEP-HLRLSVPGLA-YCTDSKSINSSA----YVAP 846
           +LH +    ++  D+ P  V++  ++E   ++++  G +    ++  + +      Y+AP
Sbjct: 129 YLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAP 185

Query: 847 E---TKESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
           E   +  +       D +  G+IL   L+G  P    
Sbjct: 186 EVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH 222

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAK 789
           IM    HPNI+RL GV    K   +V EY+E   L   LR      +  +   +  GIA 
Sbjct: 99  IMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIAS 158

Query: 790 ALRFL 794
            +++L
Sbjct: 159 GMKYL 163

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEG---KELSEVLRNLSWERRRKVAIGIAKALR 792
           K + HPN+V L  V R ++  +LV+EY +     EL    R +     + +     +A+ 
Sbjct: 57  KQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVN 116

Query: 793 FLHFH 797
           F H H
Sbjct: 117 FCHKH 121

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 16/69 (23%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKV--------AI 785
           +M    HP +V+L+GVC  +    LV E++E   LS+ LR     +R            +
Sbjct: 56  VMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLR----TQRGLFAAETLLGMCL 111

Query: 786 GIAKALRFL 794
            + + + +L
Sbjct: 112 DVCEGMAYL 120

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 16/69 (23%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKV--------AI 785
           +M    H  +V+L+GVC  ++  +++ EY+    L   LR    E R +           
Sbjct: 72  VMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLR----EMRHRFQTQQLLEMCK 127

Query: 786 GIAKALRFL 794
            + +A+ +L
Sbjct: 128 DVCEAMEYL 136

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAK 789
           +M    +P++ RL G+C       L+ + +    L + +R    N+  +      + IAK
Sbjct: 70  VMASVDNPHVCRLLGIC-LTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 128

Query: 790 ALRFL 794
            + +L
Sbjct: 129 GMNYL 133

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 49.4 bits (118), Expect = 5e-06
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 15/151 (9%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL-----SEVLRNLSWERRRKVAIGIAKA 790
           + +    +V L     ++ A  LV   + G +L               R    A  I   
Sbjct: 239 EKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCG 298

Query: 791 LRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINSSA----YVA 845
           L  LH      +V  D+ P  +++D  D  H+R+S  GLA +  + ++I        Y+A
Sbjct: 299 LEDLHRE---RIVYRDLKPENILLD--DHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMA 353

Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE  +++  T   D +  G +L +++ G+SP
Sbjct: 354 PEVVKNERYTFSPDWWALGCLLYEMIAGQSP 384

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAK 789
           IM    +P IVRL GVC   +A  LV E   G  L + L      +      ++   ++ 
Sbjct: 63  IMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSM 121

Query: 790 ALRFL 794
            +++L
Sbjct: 122 GMKYL 126

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 48.0 bits (115), Expect = 6e-06
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKA 790
           K I HPN+V+L GVC  E   Y++ E++    L + LR      +S      +A  I+ A
Sbjct: 64  KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSA 123

Query: 791 LRFL 794
           + +L
Sbjct: 124 MEYL 127

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 48.0 bits (115), Expect = 7e-06
 Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 22/153 (14%)

Query: 737 LIMHPNIVRLHGVCR--SEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFL 794
           L   PNI+ L  + +    +   LV+E++   +  ++ + L+    R     I KAL + 
Sbjct: 87  LRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYC 146

Query: 795 HFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYV------APE- 847
           H   S  ++  DV P  V++D +    LRL   GLA          +  V       PE 
Sbjct: 147 H---SMGIMHRDVKPHNVMIDHEHR-KLRLIDWGLAEFYHPGQ-EYNVRVASRYFKGPEL 201

Query: 848 ----TKESKDITEKGDIYGFGLILIDLLTGKSP 876
                     +    D++  G +L  ++  K P
Sbjct: 202 LVDYQMYDYSL----DMWSLGCMLASMIFRKEP 230

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 47.6 bits (114), Expect = 8e-06
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAK 789
           IM    HP+IV+L G+   E+  +++ E     EL   L      L        ++ I K
Sbjct: 66  IMKNLDHPHIVKLIGII-EEEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICK 124

Query: 790 ALRFL 794
           A+ +L
Sbjct: 125 AMAYL 129

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 48.2 bits (115), Expect = 9e-06
 Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 60/241 (24%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFL 794
           H  +V+L+ V  SE+  Y+V EY+    L + L+      L   +   +A  IA  + ++
Sbjct: 238 HEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 296

Query: 795 ---HF-HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYV------ 844
              ++ H        D+    ++V   +    +++  GLA     + I  + Y       
Sbjct: 297 ERMNYVHR-------DLRAANILVG--ENLVCKVADFGLA-----RLIEDNEYTARQGAK 342

Query: 845 ------APETKESKDITEKGDIYGFGLILIDLLT-GKSP--ADADFGVHESIVEWAR-YC 894
                 APE       T K D++ FG++L +L T G+ P     +  V + +    R  C
Sbjct: 343 FPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 402

Query: 895 YSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS 954
             +C       P            + ++M     C   +P  RP    +   LE  F  +
Sbjct: 403 PPEC-------P----------ESLHDLM---CQCWRKEPEERPTFEYLQAFLEDYFTST 442

Query: 955 S 955
            
Sbjct: 443 E 443

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 47.8 bits (114), Expect = 9e-06
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 18/151 (11%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHF 796
            P IV L+G  R      +  E +EG  L ++++    L  +R         + L +LH 
Sbjct: 109 SPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLH- 167

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA-----------YVA 845
             +  ++ GDV    V++   D     L   G A C     +  S            ++A
Sbjct: 168 --TRRILHGDVKADNVLLS-SDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMA 224

Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE    K    K DI+    +++ +L G  P
Sbjct: 225 PEVVMGKPCDAKVDIWSSCCMMLHMLNGCHP 255

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 20/152 (13%)

Query: 736 KLIMHPNIVRLHGVCRSEKAA------YLVYEYIEGKELSEVLR-NLSWERRRKVAIGIA 788
           K + H NI+ L  V   +K        YLV E ++   L +V++  L  ER   +   + 
Sbjct: 116 KCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMD-ANLCQVIQMELDHERMSYLLYQML 174

Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYV---- 844
             ++ LH   S  ++  D+ P  ++V       L++   GLA    +  + +  YV    
Sbjct: 175 CGIKHLH---SAGIIHRDLKPSNIVVKSDCT--LKILDFGLARTAGTSFMMTP-YVVTRY 228

Query: 845 --APETKESKDITEKGDIYGFGLILIDLLTGK 874
             APE        E  DI+  G I+ +++  K
Sbjct: 229 YRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 260

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAK 789
            M    HP+IV+L GV  +E   +++ E     EL   L+     L        A  ++ 
Sbjct: 69  TMRQFDHPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLST 127

Query: 790 ALRFL 794
           AL +L
Sbjct: 128 ALAYL 132

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 8/64 (12%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKA 790
           +M    +P IVR+ G+C   ++  LV E  E   L++ L+   ++  +   ++   ++  
Sbjct: 71  VMQQLDNPYIVRMIGIC-EAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMG 129

Query: 791 LRFL 794
           +++L
Sbjct: 130 MKYL 133

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAK 789
            M    HP+IV+L GV  +E   +++ E     EL   L+     L        A  ++ 
Sbjct: 444 TMRQFDHPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLST 502

Query: 790 ALRFL 794
           AL +L
Sbjct: 503 ALAYL 507

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 23/151 (15%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERR------RKVAIGIAKALRF 793
           HP +  L    ++      V EY  G EL     +LS ER       R     I  AL +
Sbjct: 207 HPFLTALKYSFQTHDRLCFVMEYANGGEL---FFHLSRERVFSEDRARFYGAEIVSALDY 263

Query: 794 LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA--------YVA 845
           LH     +VV  D+    +++D   + H++++  GL  C +     ++         Y+A
Sbjct: 264 LHSEK--NVVYRDLKLENLMLDK--DGHIKITDFGL--CKEGIKDGATMKTFCGTPEYLA 317

Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           PE  E  D     D +G G+++ +++ G+ P
Sbjct: 318 PEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 348

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAK 789
           IM    +P IVRL GVC   +A  LV E   G  L + L      +      ++   ++ 
Sbjct: 389 IMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSM 447

Query: 790 ALRFL 794
            +++L
Sbjct: 448 GMKYL 452

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAK 789
            M    H N++RL+GV        +V E      L + LR            + A+ +A+
Sbjct: 74  AMHSLDHRNLIRLYGVV-LTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAE 132

Query: 790 ALRFL 794
            + +L
Sbjct: 133 GMGYL 137

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 15/70 (21%)

Query: 737 LIM----HPNIVRLHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRR-------KVA 784
           +IM    HPN++ L G+C RSE +  +V  Y++  +L   +RN   E             
Sbjct: 78  IIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRN---ETHNPTVKDLIGFG 134

Query: 785 IGIAKALRFL 794
           + +AK +++L
Sbjct: 135 LQVAKGMKYL 144

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAK 789
           +M    +P++ RL G+C       L+ + +    L + +R    N+  +      + IAK
Sbjct: 70  VMASVDNPHVCRLLGIC-LTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 128

Query: 790 ALRFL 794
            + +L
Sbjct: 129 GMNYL 133

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 10/69 (14%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----------LSWERRRKVAI 785
               H NIVR  GV       +++ E + G +L   LR           L+      VA 
Sbjct: 88  SKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 147

Query: 786 GIAKALRFL 794
            IA   ++L
Sbjct: 148 DIACGCQYL 156

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLH 795
           K     ++VRL GV    +   ++ E +   +L   LR+L         +      + + 
Sbjct: 83  KEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQ 142

Query: 796 FHCSPSVVAGDVSPG 810
                   AG+++ G
Sbjct: 143 M-------AGEIADG 150

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 60/241 (24%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFL 794
           H  +V+L+ V  SE+  Y+V EY+    L + L+      L   +   +A  IA  + ++
Sbjct: 321 HEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 379

Query: 795 ---HF-HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYV------ 844
              ++ H        D+    ++V   +    +++  GLA     + I  + Y       
Sbjct: 380 ERMNYVHR-------DLRAANILVG--ENLVCKVADFGLA-----RLIEDNEYTARQGAK 425

Query: 845 ------APETKESKDITEKGDIYGFGLILIDLLT-GKSP--ADADFGVHESIVEWAR-YC 894
                 APE       T K D++ FG++L +L T G+ P     +  V + +    R  C
Sbjct: 426 FPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 485

Query: 895 YSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS 954
             +C       P            + ++M     C   +P  RP    +   LE  F  +
Sbjct: 486 PPEC-------P----------ESLHDLM---CQCWRKEPEERPTFEYLQAFLEDYFTST 525

Query: 955 S 955
            
Sbjct: 526 E 526

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 18/154 (11%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL-------SEVLRNLSWERRRKVAIGIA 788
             +    IV L     ++    LV   + G ++        E        R       I 
Sbjct: 240 AKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIV 299

Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--YCTDSKSINSSA---- 842
             L  LH     +++  D+ P  V++D  D+ ++R+S  GLA             A    
Sbjct: 300 SGLEHLHQR---NIIYRDLKPENVLLD--DDGNVRISDLGLAVELKAGQTKTKGYAGTPG 354

Query: 843 YVAPETKESKDITEKGDIYGFGLILIDLLTGKSP 876
           ++APE    ++     D +  G+ L +++  + P
Sbjct: 355 FMAPELLLGEEYDFSVDYFALGVTLYEMIAARGP 388

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 736 KLIMHPNIVRLHGVC-RSEKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAK 789
             + H N+V+L GV    +   Y+V EY+    L + LR+     L  +   K ++ + +
Sbjct: 69  TQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCE 128

Query: 790 ALRFL 794
           A+ +L
Sbjct: 129 AMEYL 133

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 10/69 (14%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRR----------KVAI 785
               H NIVR  GV       +++ E + G +L   LR       +           VA 
Sbjct: 129 SKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 188

Query: 786 GIAKALRFL 794
            IA   ++L
Sbjct: 189 DIACGCQYL 197

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 10/66 (15%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIA 788
           +M    H  +VRL+ V  +++  Y++ EY+E   L + L+      L+  +   +A  IA
Sbjct: 61  LMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIA 119

Query: 789 KALRFL 794
           + + F+
Sbjct: 120 EGMAFI 125

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 10/68 (14%)

Query: 738 IM----HPNIVRLHGVCRSEKAA--YLVYEYIEGKELSEVLRN----LSWERRRKVAIGI 787
           I+    H NIV+  G+C  +      L+ E++    L E L      ++ +++ K A+ I
Sbjct: 76  ILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQI 135

Query: 788 AKALRFLH 795
            K + +L 
Sbjct: 136 CKGMDYLG 143

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 736 KLIMHPNIVRLHGVCRSEKAA--YLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKAL 791
           + + H +I++  G C    AA   LV EY+    L + L    +   +    A  I + +
Sbjct: 88  RTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGM 147

Query: 792 RFLH 795
            +LH
Sbjct: 148 AYLH 151

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEG--KELSEVLRNLSWERRRKVAIGIAKALRFLHFH 797
           H NI+ L  V       +L++EY E   K+  +   ++S    +     +   + F H  
Sbjct: 92  HRNIIELKSVIHHNHRLHLIFEYAENDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSR 151

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS 776
           +     HPN+V L GV   ++   +++ Y    +L E L   S
Sbjct: 65  LRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRS 107

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 737 LIM----HPNIVRLHGVC-RSEKAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGI 787
           +IM    HPN++ L G+C RSE +  +V  Y++  +L   +R    N + +      + +
Sbjct: 142 IIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQV 201

Query: 788 AKALRFL 794
           AK ++FL
Sbjct: 202 AKGMKFL 208

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 12/67 (17%), Positives = 31/67 (46%), Gaps = 11/67 (16%)

Query: 736 KLIMHPNIVRLHGVC-RSEKAAYLVYEYIEGKELSEVLRNLSWERRR-------KVAIGI 787
           + + HPN++ L G+    E   +++  Y+   +L + +R+    +R           + +
Sbjct: 77  RGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRS---PQRNPTVKDLISFGLQV 133

Query: 788 AKALRFL 794
           A+ + +L
Sbjct: 134 ARGMEYL 140

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 738 IM----HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAK 789
            +    H +IVRL G+C    +  LV +Y+    L + +R     L  +      + IAK
Sbjct: 68  AIGSLDHAHIVRLLGLC-PGSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAK 126

Query: 790 ALRFL 794
            + +L
Sbjct: 127 GMYYL 131

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 46/230 (20%), Positives = 82/230 (35%), Gaps = 44/230 (19%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL--RNLSWERRRKVAIG----IAK 789
                 N V        +   Y+  +    + L + +  R    +R   V +     IA+
Sbjct: 116 DPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAE 175

Query: 790 ALRFLHFHCSPSVVAGDVSP----------------GKVIVDGKDEPHLRLSVPGLAYCT 833
           A+ FLH   S  ++  D+ P                G V    +DE    +  P  AY T
Sbjct: 176 AVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYAT 232

Query: 834 DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARY 893
            +  + +  Y++PE     + + K DI+  GLIL +LL   S       +   +    ++
Sbjct: 233 HTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRIITDVRN-LKF 291

Query: 894 CYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
                       P +       ++ +V+ M       +  PT RP A+D+
Sbjct: 292 ------------PLLFTQKYPQEHMMVQDM------LSPSPTERPEATDI 323

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 10/67 (14%)

Query: 738 IM----HPNIVRLHGVC-RSEKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGI 787
           +M    H N+V+L GV    +   Y+V EY+    L + LR+     L  +   K ++ +
Sbjct: 239 VMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDV 298

Query: 788 AKALRFL 794
            +A+ +L
Sbjct: 299 CEAMEYL 305

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 44.9 bits (107), Expect = 7e-05
 Identities = 12/41 (29%), Positives = 23/41 (56%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS 776
             + H +IV+ +GVC       +V+EY++  +L++ LR   
Sbjct: 72  TNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHG 112

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 14/107 (13%)

Query: 700 YKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVC----RSEKA 755
            ++ +     +F +K + D           +V    +    P+IVR+  V        K 
Sbjct: 35  LQIFNKRTQEKFALKMLQDCPKARR-----EVELHWRASQCPHIVRIVDVYENLYAGRKC 89

Query: 756 AYLVYEYIEGKELSE--VLRNLSW--ERR-RKVAIGIAKALRFLHFH 797
             +V E ++G EL      R      ER   ++   I +A+++LH  
Sbjct: 90  LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI 136

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 26/169 (15%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFH 797
            P +V+L    + ++  Y+V EY+ G +L  ++ N  +  +  R     +  AL  +H  
Sbjct: 128 SPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSM 187

Query: 798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA-------YVAPETKE 850
                +  DV P  +++D     HL+L+  G     + + +           Y++PE  +
Sbjct: 188 ---GFIHRDVKPDNMLLD--KSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLK 242

Query: 851 SKDITEKGDIYG-------FGLILIDLLTGKSP--ADADFGVHESIVEW 890
           S+        YG        G+ L ++L G +P  AD+  G +  I+  
Sbjct: 243 SQGGDGY---YGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNH 288

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 44.9 bits (107), Expect = 8e-05
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN 774
           K + HP++++L+G C  +    L+ EY +   L   LR 
Sbjct: 81  KQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRE 119

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 738 IM----HPNIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGI 787
           I+    H NIV+  GVC S   +   L+ EY+    L + L+     +   +  +    I
Sbjct: 64  ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQI 123

Query: 788 AKALRFLH 795
            K + +L 
Sbjct: 124 CKGMEYLG 131

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 738 IM----HPNIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGI 787
           I+    H NIV+  GVC S   +   L+ EY+    L + L+     +   +  +    I
Sbjct: 95  ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQI 154

Query: 788 AKALRFLH 795
            K + +L 
Sbjct: 155 CKGMEYLG 162

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 47/244 (19%), Positives = 88/244 (36%), Gaps = 53/244 (21%)

Query: 666 FNSKVGKSLTIDEIISSTTEENLTSRGK--KGVSSS-YKVRSLANDMQFVVKKIIDVNTI 722
            + K    LTI          +L + G+   G     +K+R        +  K +  +  
Sbjct: 5   SSGKQTGYLTIGGQRYQAEINDLENLGEMGSGTCGQVWKMRFRKTG-HVIAVKQMRRS-- 61

Query: 723 TTSSFWPDVSQFGKLIM----------HPNIVRLHGVCRSEKAAYLVYEYIEG---KELS 769
                  +  +  +++M           P IV+  G   +    ++  E +     K   
Sbjct: 62  ------GNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELMGTCAEKLKK 115

Query: 770 EVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL 829
            +   +      K+ + I KAL +L       V+  DV P  +++D + +  L       
Sbjct: 116 RMQGPIPERILGKMTVAIVKALYYL--KEKHGVIHRDVKPSNILLDERGQIKL------- 166

Query: 830 AYC--------TDSKSINSSA----YVAPETKESKDITEKG-----DIYGFGLILIDLLT 872
             C         D K+ + SA    Y+APE  +  D T+       D++  G+ L++L T
Sbjct: 167 --CDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELAT 224

Query: 873 GKSP 876
           G+ P
Sbjct: 225 GQFP 228

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 732 SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN 774
            + G    HPNI+ L G C      YL  EY     L + LR 
Sbjct: 80  CKLGH---HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRK 119

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 44.4 bits (106), Expect = 1e-04
 Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 29/170 (17%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALR 792
            ++ HP I+R+ G  +  +  +++ +YIEG EL  +LR          +  A  +  AL 
Sbjct: 61  SIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALE 120

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---SKSINSSA------- 842
           +LH      ++  D+ P  +++D     H+++        TD   +K +           
Sbjct: 121 YLHSK---DIIYRDLKPENILLD--KNGHIKI--------TDFGFAKYVPDVTYTLCGTP 167

Query: 843 -YVAPETKESKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVE 889
            Y+APE   +K   +  D + FG+++ ++L G +P         +E I+ 
Sbjct: 168 DYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILN 217

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 31/161 (19%)

Query: 740 HPNIVRLHGVCRSEKAA--------------YLVYEYIEGKELSEVLR--NLSWERRRKV 783
           H NIV++  +     +               Y+V EY+E  +L+ VL    L  E  R  
Sbjct: 67  HDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYME-TDLANVLEQGPLLEEHARLF 125

Query: 784 AIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA- 842
              + + L+++H   S +V+  D+ P  + ++ +D   L++   GLA   D    +    
Sbjct: 126 MYQLLRGLKYIH---SANVLHRDLKPANLFINTED-LVLKIGDFGLARIMDPHYSHKGHL 181

Query: 843 --YV------APE-TKESKDITEKGDIYGFGLILIDLLTGK 874
              +      +P       + T+  D++  G I  ++LTGK
Sbjct: 182 SEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGK 222

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKA 790
           K + H  +V+LH V  +++  Y++ E++    L + L++         +    +  IA+ 
Sbjct: 238 KTLQHDKLVKLHAVV-TKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEG 296

Query: 791 LRFL 794
           + F+
Sbjct: 297 MAFI 300

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 732 SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS 776
              GK   H NI+ L G C  +   Y++ EY     L E LR   
Sbjct: 141 KMIGK---HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARR 182

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLH 795
           H NIV LH +  +EK+  LV+EY++ K+L + L +    ++    +     + + L + H
Sbjct: 59  HANIVTLHDIIHTEKSLTLVFEYLD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCH 117

Query: 796 FH 797
             
Sbjct: 118 RQ 119

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS 776
            ++ H +IVR  GVC   +   +V+EY+   +L+  LR+  
Sbjct: 98  TMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHG 138

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 738 IM----HPNIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGI 787
           I+       IV+  GV      ++  LV EY+    L + L+     L   R    +  I
Sbjct: 77  ILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQI 136

Query: 788 AKALRFLH 795
            K + +L 
Sbjct: 137 CKGMEYLG 144

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 21/153 (13%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLH 795
              I  LH   + +   YLV +Y  G +L  +L      L  E  R     +  A+  +H
Sbjct: 133 SKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVH 192

Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--YCTDSKSINSSA-----YVAPET 848
                  V  D+ P  +++D     H+RL+  G       D    +S A     Y++PE 
Sbjct: 193 QL---HYVHRDIKPDNILMD--MNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEI 247

Query: 849 KESKDITEKG-----DIYGFGLILIDLLTGKSP 876
            ++ +  +       D +  G+ + ++L G++P
Sbjct: 248 LQAMEGGKGRYGPECDWWSLGVCMYEMLYGETP 280

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 23/153 (15%)

Query: 736 KLIMHPNIVRLHGVCRSEKAA------YLVYEYIEGKELSEVLR-NLSWERRRKVAIGIA 788
           K + H N++ L  V     +       YLV  +++  +L +++    S E+ + +   + 
Sbjct: 78  KHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQKIMGLKFSEEKIQYLVYQML 136

Query: 789 KALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYV---- 844
           K L+++H   S  VV  D+ PG + V+  ++  L++   GLA   D+     + YV    
Sbjct: 137 KGLKYIH---SAGVVHRDLKPGNLAVN--EDCELKILDFGLARHADA---EMTGYVVTRW 188

Query: 845 --APETK-ESKDITEKGDIYGFGLILIDLLTGK 874
             APE         +  DI+  G I+ ++LTGK
Sbjct: 189 YRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGK 221

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLS 776
               +PNIV+L GVC   K   L++EY+   +L+E LR++S
Sbjct: 105 AEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMS 145

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 732 SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN 774
              GK   H NI+ L G C  +   Y++ EY     L E LR 
Sbjct: 95  KMIGK---HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRA 134

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 43.9 bits (103), Expect = 3e-04
 Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 18/152 (11%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELS---EVLRNLSWERRRKVAIGIAKALRFLHF 796
            P + +LH   ++    Y V EY+ G +L    + +           A  IA  L FL  
Sbjct: 401 PPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQS 460

Query: 797 HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA--------YVAPET 848
                ++  D+    V++D   E H++++  G+  C ++     +         Y+APE 
Sbjct: 461 K---GIIYRDLKLDNVMLDS--EGHIKIADFGM--CKENIWDGVTTKTFCGTPDYIAPEI 513

Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSPADAD 880
              +   +  D + FG++L ++L G++P + +
Sbjct: 514 IAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE 545

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 24/154 (15%)

Query: 736 KLIMHPNIVRLHGVCRSEKAA------YLVYEYIEGKELSEVLRN--LSWERRRKVAIGI 787
           K + H N++ L  V   ++        YLV  ++   +L +++++  L  +R + +   +
Sbjct: 79  KHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMG-TDLGKLMKHEKLGEDRIQFLVYQM 137

Query: 788 AKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYV--- 844
            K LR++H   +  ++  D+ PG + V+  ++  L++   GLA   DS     + YV   
Sbjct: 138 LKGLRYIH---AAGIIHRDLKPGNLAVN--EDCELKILDFGLARQADS---EMTGYVVTR 189

Query: 845 ---APETK-ESKDITEKGDIYGFGLILIDLLTGK 874
              APE        T+  DI+  G I+ +++TGK
Sbjct: 190 WYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGK 223

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 38/171 (22%), Positives = 64/171 (37%), Gaps = 25/171 (14%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLH 795
              I +LH   + E   YLV EY  G +L  +L      +  E  R     I  A+  +H
Sbjct: 120 RRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVH 179

Query: 796 FHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA-------YVAPET 848
                  V  D+ P  +++D     H+RL+  G      +     S        Y++PE 
Sbjct: 180 RL---GYVHRDIKPDNILLD--RCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEI 234

Query: 849 KESKDITEKGDIYG-------FGLILIDLLTGKSP--ADADFGVHESIVEW 890
            ++         YG        G+   ++  G++P  AD+    +  IV +
Sbjct: 235 LQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHY 285

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLH 795
           H NIV+L+ V  ++K   LV+E+++ ++L ++L      L     +   + +   + + H
Sbjct: 59  HSNIVKLYDVIHTKKRLVLVFEHLD-QDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH 117

Query: 796 FH 797
             
Sbjct: 118 DR 119

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 732 SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN 774
           S  G    H NIV L G C       ++ EY    +L   LR 
Sbjct: 81  SYLGN---HMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRR 120

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 732 SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN 774
           S  G+   H NIV L G C       ++ EY    +L   LR 
Sbjct: 104 SHLGQ---HENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRR 143

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 42.5 bits (101), Expect = 4e-04
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFL 794
           HPNIV+L  V  +E   YLV+E++  ++L + +       +     +     + + L F 
Sbjct: 61  HPNIVKLLDVIHTENKLYLVFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119

Query: 795 HFH 797
           H H
Sbjct: 120 HSH 122

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 732 SQFGKLIMHPNIVRLHGVC-RSEKAAYLVYEYIEGKELSEVLRN 774
              G    H N+V L G C +      ++ E+ +   LS  LR+
Sbjct: 85  IHIGH---HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRS 125

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 42.5 bits (101), Expect = 4e-04
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLH 795
           H NIVRLH V  S+K   LV+E+ + ++L +   +    L  E  +     + K L F H
Sbjct: 60  HKNIVRLHDVLHSDKKLTLVFEFCD-QDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCH 118

Query: 796 FH 797
             
Sbjct: 119 SR 120

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEY--------IEGKELSEVLRNLSWERRRKVAIGIAKAL 791
           H NIVRL+ V  +E    LV+E+        ++ + +    R L     +     + + L
Sbjct: 62  HENIVRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGL 121

Query: 792 RFLHFH 797
            F H +
Sbjct: 122 AFCHEN 127

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 732 SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN 774
           +Q G    H NIV L G C      YL++EY    +L   LR+
Sbjct: 103 TQLGS---HENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRS 142

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 42.5 bits (101), Expect = 5e-04
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLH 795
           HPNIV L  V  SE+   LV+E++E K+L +VL      L   + +     + + +   H
Sbjct: 78  HPNIVSLIDVIHSERCLTLVFEFME-KDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCH 136

Query: 796 FH 797
            H
Sbjct: 137 QH 138

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 10/90 (11%)

Query: 83  HLPHVESINLSSNQLSG-EIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLS--RLEILDL 139
           ++P + S+NLS+N+L   +  S I   + +L+ LNLS N       +  +   +LE L L
Sbjct: 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 227

Query: 140 SNNMLSGKIPEE-------IGSFSGLKVLD 162
             N L     ++          F  L  LD
Sbjct: 228 DGNSLCDTFRDQSTYISAIRERFPKLLRLD 257

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 732 SQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN 774
              GK   H NI+ L G C  +   Y++ EY     L E L+ 
Sbjct: 129 KMIGK---HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQA 168

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 14/73 (19%)

Query: 736 KLIMHPNIVRLHGVC-----RSEKAAYLVYEYIEGKELSEVLRNLSWERRRKV------- 783
           K   HPN++RL GVC     +      ++  +++  +L   L     E   K        
Sbjct: 91  KDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLL 150

Query: 784 --AIGIAKALRFL 794
              + IA  + +L
Sbjct: 151 KFMVDIALGMEYL 163

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 15/74 (20%)

Query: 736 KLIMHPNIVRLHGVC------RSEKAAYLVYEYIEGKELSEVLRNLSWERRR-------- 781
           K   HP++ +L GV              ++  +++  +L   L                 
Sbjct: 80  KEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTL 139

Query: 782 -KVAIGIAKALRFL 794
            +  + IA  + +L
Sbjct: 140 VRFMVDIACGMEYL 153

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 26/153 (16%)

Query: 740 HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAK--------AL 791
           HP +V L    + E+  ++V + + G +L   L+     +         K        AL
Sbjct: 74  HPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQ-----QNVHFKEETVKLFICELVMAL 128

Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA-YCTDSKSINS----SAYVAP 846
            +L    +  ++  D+ P  +++D  +  H+ ++   +A        I +      Y+AP
Sbjct: 129 DYLQ---NQRIIHRDMKPDNILLD--EHGHVHITDFNIAAMLPRETQITTMAGTKPYMAP 183

Query: 847 ETKESKDITEKG---DIYGFGLILIDLLTGKSP 876
           E   S+         D +  G+   +LL G+ P
Sbjct: 184 EMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRP 216

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	966
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.98
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.98
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.98
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.98
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.98
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.97
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.97
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.37
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.31
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.18
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.14
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.06
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.06
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.03
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.94
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.72
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.71
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.68
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.64
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.62
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.59
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.57
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.51
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.35
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.09
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.99
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	97.89
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.88
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	97.87
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	97.82
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.48
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	97.23
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.07
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.07
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.99
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.98
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.68
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	96.57
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.34
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.33
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	96.02
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.93
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	95.87
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.03
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	94.02
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	93.75
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	93.46
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	93.0
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	92.65
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	92.3
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	91.88
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	89.73
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	89.26
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	88.46
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	88.09
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	86.54
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	83.49
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	80.43

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.5e-81  Score=776.59  Aligned_cols=584  Identities=36%  Similarity=0.589  Sum_probs=460.4

Q ss_pred             CCcHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCcccc---cc---------------
Q 002105           17 TCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGK---IS---------------   78 (966)
Q Consensus        17 ~~~~~~~~~Ll~~k~~~~~~~~~l~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~~~---~~---------------   78 (966)
                      .+.++|++||++||+++.||. .+++|+.++|||+|+||+|+ .++|+.|||++++++|.   ++               
T Consensus         8 ~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~   85 (768)
T 3rgz_A            8 QSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLS   85 (768)
T ss_dssp             CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECT
T ss_pred             cCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccCCc
Confidence            456789999999999999988 89999877899999999998 67999999999998886   43               


Q ss_pred             --------ccccCCCCCCEEEcCCCCCccccCh-hhhhcCCCCcEEECCCCCCCCCCC----------------------
Q 002105           79 --------SSIFHLPHVESINLSSNQLSGEIPS-DIFSSSNSLRFLNLSNNNFTGPVP----------------------  127 (966)
Q Consensus        79 --------~~~~~l~~L~~L~Ls~N~l~g~ip~-~~~~~l~~L~~L~Ls~N~l~~~~~----------------------  127 (966)
                              +.+..+++|++|||++|.++|.+|. ..+..+++|++|+|++|.+++..|                      
T Consensus        86 ~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  165 (768)
T 3rgz_A           86 NSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG  165 (768)
T ss_dssp             TSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEE
T ss_pred             CCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCC
Confidence                    4677888899999999998887776 123445777777777766654333                      


Q ss_pred             ------------------------------CCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCC
Q 002105          128 ------------------------------IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSIS  177 (966)
Q Consensus       128 ------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  177 (966)
                                                    ...+++|++|+|++|.+++.+|. ++++++|++|+|++|.+++.+|..++
T Consensus       166 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~  244 (768)
T 3rgz_A          166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS  244 (768)
T ss_dssp             ETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTT
T ss_pred             cCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHh
Confidence                                          12334444444445555544444 55555555555555555555555555


Q ss_pred             CCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCC-CCCCEEEeecccccccCCcCCCCCCccce
Q 002105          178 NITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDL-TSLNHLDLVYNNLTGQIPPSFGNLSNLRY  256 (966)
Q Consensus       178 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  256 (966)
                      ++++|++|++++|.+++.+|..  .+++|++|++++|.+++.+|..+..+ ++|++|++++|++++.+|..|+++++|++
T Consensus       245 ~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  322 (768)
T 3rgz_A          245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES  322 (768)
T ss_dssp             TCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCE
T ss_pred             cCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccE
Confidence            5555555555555555544443  45555555666665555666666554 67777777777777667777777777777


Q ss_pred             EeccccccCCCCChh-hhcCCCCCEEEccCCcCcccCchhhcCCC-CCceecccCCCCCCCCCCCCCC--CCCccEEEcc
Q 002105          257 LFLYQNKLTGSIPKS-ILGLKSLVSFDLSDNYLSGEIPEEVIQLQ-NLEILHLFSNNFTGKIPSSLAS--MPKLQVLQLW  332 (966)
Q Consensus       257 L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~--l~~L~~L~L~  332 (966)
                      |++++|++++.+|.. +..+++|++|++++|.+++.+|..+..++ +|+.|++++|.+++.+|..+..  +++|++|+++
T Consensus       323 L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~  402 (768)
T 3rgz_A          323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ  402 (768)
T ss_dssp             EECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred             EECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence            777777776666654 66777777777777777766777666665 6777777777777666666655  6778888888


Q ss_pred             CCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcC
Q 002105          333 SNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGEL  412 (966)
Q Consensus       333 ~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  412 (966)
                      +|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|++|++++|++++.+
T Consensus       403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  482 (768)
T 3rgz_A          403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI  482 (768)
T ss_dssp             SSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             CCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCccCCC-CcCcccccccccccccccccCCCc-----
Q 002105          413 SSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPD-SFGSDQLENLDLSENRFSGTIPRS-----  486 (966)
Q Consensus       413 ~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~L~~L~Ls~N~l~~~~p~~-----  486 (966)
                      |..+..+++|++|++++|++++.+|..+..+++|++|+|++|+++|.+|. +..+++|+.|++++|+++|.+|..     
T Consensus       483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~  562 (768)
T 3rgz_A          483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS  562 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred             CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence            88888888888888888888888888888888888888888888888887 456788888888888888776653     


Q ss_pred             -----------------------------------------------------------------ccCcCCCCEEEccCC
Q 002105          487 -----------------------------------------------------------------FGRLSELMQLKISRN  501 (966)
Q Consensus       487 -----------------------------------------------------------------~~~l~~L~~L~Ls~N  501 (966)
                                                                                       +..+++|+.|||++|
T Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N  642 (768)
T 3rgz_A          563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN  642 (768)
T ss_dssp             TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred             chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence                                                                             444678999999999


Q ss_pred             ccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCcccccCCC
Q 002105          502 KLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPS  581 (966)
Q Consensus       502 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~ip~  581 (966)
                      +++|.+|.+++.+++|+.|+|++|+++|.+|..++.+++|+.||||+|+++|.+|..++.+++|++||+++|+++|.||.
T Consensus       643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCccccccCC-CCCCC--CCCC
Q 002105          582 TGAFLAINATAVAGN-DLCGG--DSTS  605 (966)
Q Consensus       582 ~~~~~~~~~~~~~gn-~lcg~--~~~~  605 (966)
                      .+++.+++..+|.|| ++||.  .+|.
T Consensus       723 ~~~~~~~~~~~~~gN~~Lcg~~l~~C~  749 (768)
T 3rgz_A          723 MGQFETFPPAKFLNNPGLCGYPLPRCD  749 (768)
T ss_dssp             SSSGGGSCGGGGCSCTEEESTTSCCCC
T ss_pred             chhhccCCHHHhcCCchhcCCCCcCCC
Confidence            999999999999999 89997  3454

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.4e-65  Score=634.57  Aligned_cols=517  Identities=34%  Similarity=0.507  Sum_probs=419.4

Q ss_pred             CCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCC----CCCCCCCcEEeCCCCCCCCcCCCCc-CCCCC
Q 002105           83 HLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP----IGSLSRLEILDLSNNMLSGKIPEEI-GSFSG  157 (966)
Q Consensus        83 ~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~  157 (966)
                      +|++|+.++++.|.+. .+|.. +..+++|++|||++|.++|.+|    ++.+++|++|||++|.+++.+|..+ .++++
T Consensus        75 ~L~~L~~l~~~~~~~~-~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  152 (768)
T 3rgz_A           75 SLTGLESLFLSNSHIN-GSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS  152 (768)
T ss_dssp             TCTTCCEEECTTSCEE-ECCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred             ccCcccccCCcCCCcC-CCchh-hccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCC
Confidence            4667777777777665 35554 5667999999999999998544    5889999999999999988777665 56666


Q ss_pred             cCEEEccCCCCcccCCcC-------------------------CCCCCCCCEEEccCCCCcccCCcccccCCcceEEEcc
Q 002105          158 LKVLDLGGNVLVGEIPLS-------------------------ISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLG  212 (966)
Q Consensus       158 L~~L~L~~N~l~~~~p~~-------------------------~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  212 (966)
                      |++|+|++|.+++..|..                         +.++++|++|++++|.+++.+|. ++++++|++|+++
T Consensus       153 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls  231 (768)
T 3rgz_A          153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS  231 (768)
T ss_dssp             CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECC
T ss_pred             CCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECc
Confidence            666666666655443322                         24556666666666666665555 6666666666666


Q ss_pred             CCCCCCCCCcCccCCCCCCEEEeeccc----------------------ccccCCcCCCCC-CccceEeccccccCCCCC
Q 002105          213 YNNLSGEIPKEIGDLTSLNHLDLVYNN----------------------LTGQIPPSFGNL-SNLRYLFLYQNKLTGSIP  269 (966)
Q Consensus       213 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~----------------------l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p  269 (966)
                      +|.+++.+|..++++++|++|++++|.                      +++.+|..+..+ ++|++|++++|++++.+|
T Consensus       232 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p  311 (768)
T 3rgz_A          232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP  311 (768)
T ss_dssp             SSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred             CCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence            666666556555555555555555554                      444566666554 777777777777777777


Q ss_pred             hhhhcCCCCCEEEccCCcCcccCchh-hcCCCCCceecccCCCCCCCCCCCCCCCC-CccEEEccCCcCcccCCccccC-
Q 002105          270 KSILGLKSLVSFDLSDNYLSGEIPEE-VIQLQNLEILHLFSNNFTGKIPSSLASMP-KLQVLQLWSNQFSGEIPSNLGK-  346 (966)
Q Consensus       270 ~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~-  346 (966)
                      ..+.++++|++|++++|.++|.+|.. +..+++|++|++++|.+++.+|..+..++ +|+.|++++|.+++.+|..+.. 
T Consensus       312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~  391 (768)
T 3rgz_A          312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN  391 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred             hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence            77777777888888888777777765 77777888888888888777777777776 7888888888888777777766 


Q ss_pred             -CCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEE
Q 002105          347 -QNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFL  425 (966)
Q Consensus       347 -~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  425 (966)
                       +++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|++|++++|++.+.+|..+..+++|++|
T Consensus       392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  471 (768)
T 3rgz_A          392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL  471 (768)
T ss_dssp             TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence             7789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCccCcchhccCCCcEecCCCCcCCccCCC-CcCcccccccccccccccccCCCcccCcCCCCEEEccCCccC
Q 002105          426 DISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPD-SFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLF  504 (966)
Q Consensus       426 dLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  504 (966)
                      ++++|++++.+|..+..+++|++|+|++|++++.+|. +..+++|++|+|++|+++|.+|..++.+++|+.|++++|+++
T Consensus       472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            9999999999999999999999999999999999998 457799999999999999999999999999999999999999


Q ss_pred             CCChhhcc----------------------------------------------------------------------cc
Q 002105          505 GDIPEELS----------------------------------------------------------------------SC  514 (966)
Q Consensus       505 ~~~p~~~~----------------------------------------------------------------------~l  514 (966)
                      |.+|..+.                                                                      .+
T Consensus       552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l  631 (768)
T 3rgz_A          552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN  631 (768)
T ss_dssp             SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred             CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence            88886543                                                                      35


Q ss_pred             ccccccccCCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCcccccCCCC-CccCCCccccc
Q 002105          515 KKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST-GAFLAINATAV  593 (966)
Q Consensus       515 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~~  593 (966)
                      ++|++|||++|+++|.+|..++.++.|+.|||++|+++|.+|..+++++.|+.||+++|+++|.+|.. +.+..+....+
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  711 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL  711 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence            67899999999999999999999999999999999999999999999999999999999999999965 44556677778


Q ss_pred             cCCCCCCCC
Q 002105          594 AGNDLCGGD  602 (966)
Q Consensus       594 ~gn~lcg~~  602 (966)
                      .+|.+.|..
T Consensus       712 s~N~l~g~i  720 (768)
T 3rgz_A          712 SNNNLSGPI  720 (768)
T ss_dssp             CSSEEEEEC
T ss_pred             cCCcccccC
Confidence            888877753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.2e-57  Score=559.97  Aligned_cols=535  Identities=21%  Similarity=0.191  Sum_probs=455.4

Q ss_pred             CEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCC--CCCCCCCcEEeC
Q 002105           62 HVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--IGSLSRLEILDL  139 (966)
Q Consensus        62 ~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L  139 (966)
                      +++.|+|++|++++..+.+|.++++|++|||++|.+.+ +++..+..+++|++|+|++|.+++..+  ++.+++|++|+|
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            78999999999999888889999999999999999985 555667778999999999999997443  789999999999


Q ss_pred             CCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccc--cCCcceEEEccCCCCC
Q 002105          140 SNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIG--QLRNLKWIYLGYNNLS  217 (966)
Q Consensus       140 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~N~l~  217 (966)
                      ++|++++..|..|+++++|++|+|++|.+.+..|..++++++|++|++++|.+++..+..+.  .+++|++|++++|.++
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            99999988888999999999999999999999999999999999999999999987777664  4589999999999999


Q ss_pred             CCCCcCccCC---------------------------CCCCEEEeecccccccCCcCCCCCCc--cceEeccccccCCCC
Q 002105          218 GEIPKEIGDL---------------------------TSLNHLDLVYNNLTGQIPPSFGNLSN--LRYLFLYQNKLTGSI  268 (966)
Q Consensus       218 ~~~p~~l~~l---------------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~L~~n~l~~~~  268 (966)
                      +..|..+..+                           ++|++|++++|.+++..|.+|.+++.  |++|++++|++++..
T Consensus       185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  264 (680)
T 1ziw_A          185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG  264 (680)
T ss_dssp             CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred             ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence            8888776654                           56788888888898888888988865  999999999999888


Q ss_pred             ChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCC-----CCCC----CCCCCCCccEEEccCCcCccc
Q 002105          269 PKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTG-----KIPS----SLASMPKLQVLQLWSNQFSGE  339 (966)
Q Consensus       269 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----~~p~----~l~~l~~L~~L~L~~N~l~~~  339 (966)
                      |..|..+++|++|++++|.+++..|..+..+++|+.|++++|...+     .+|.    .+..+++|++|++++|.+++.
T Consensus       265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~  344 (680)
T 1ziw_A          265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI  344 (680)
T ss_dssp             TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence            8889999999999999999999888899999999999998876554     2332    678899999999999999988


Q ss_pred             CCccccCCCCCcEEEccCCccccc--CCCCccC--CCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCC-h
Q 002105          340 IPSNLGKQNNLTVIDLSTNFLTGK--IPETLCD--SGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELS-S  414 (966)
Q Consensus       340 ~p~~~~~~~~L~~L~Ls~N~l~~~--~p~~~~~--~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~  414 (966)
                      .+..|..+++|+.|++++|.+++.  .+..|..  ..+|+.|++++|++++..|..|..+++|+.|++++|++.+.+| .
T Consensus       345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  424 (680)
T 1ziw_A          345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ  424 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred             ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence            888899999999999999876432  2233332  2578999999999998888899999999999999999987665 6


Q ss_pred             hhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCC--ccCCC-CcCcccccccccccccccccCCCcccCcC
Q 002105          415 EFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFS--GKLPD-SFGSDQLENLDLSENRFSGTIPRSFGRLS  491 (966)
Q Consensus       415 ~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~-~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~  491 (966)
                      .|..+++|++|++++|++.+..+..+..+++|+.|++++|.++  +.+|. +..+++|+.|++++|++++..|..|..++
T Consensus       425 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~  504 (680)
T 1ziw_A          425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE  504 (680)
T ss_dssp             GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc
Confidence            8889999999999999998888888888999999999999887  45666 45678899999999999988888899999


Q ss_pred             CCCEEEccCCccCCCCh--------hhccccccccccccCCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCC
Q 002105          492 ELMQLKISRNKLFGDIP--------EELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVA  563 (966)
Q Consensus       492 ~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~  563 (966)
                      +|+.|+|++|++++..+        ..+.++++|+.|+|++|+++...+..|..+++|+.|||++|++++..+..|..++
T Consensus       505 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  584 (680)
T 1ziw_A          505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV  584 (680)
T ss_dssp             TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCC
Confidence            99999999999876422        2378889999999999999854445788999999999999999987777788899


Q ss_pred             CCCeeeCcCCcccccCCCCC--ccCCCccccccCCC
Q 002105          564 SLVQVNISHNHFHGSLPSTG--AFLAINATAVAGND  597 (966)
Q Consensus       564 ~L~~l~ls~N~l~g~ip~~~--~~~~~~~~~~~gn~  597 (966)
                      +|+.|++++|++++..|..-  .+..+....+.+|.
T Consensus       585 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP  620 (680)
T ss_dssp             TCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred             CCCEEECCCCcCCccChhHhcccccccCEEEccCCC
Confidence            99999999999988766421  34556666777774

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3e-56  Score=547.51  Aligned_cols=520  Identities=22%  Similarity=0.254  Sum_probs=465.9

Q ss_pred             CCEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCC--CCCCCCCCcEEe
Q 002105           61 THVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPV--PIGSLSRLEILD  138 (966)
Q Consensus        61 ~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~  138 (966)
                      ++++.|+|++|.+++..+.+|.++++|++|+|++|.++ .+|...|..+++|++|+|++|.+++..  .++.+++|++|+
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  127 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD  127 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred             CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence            47899999999999999999999999999999999998 788888888899999999999998754  378999999999


Q ss_pred             CCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCC--CCCCCCEEEccCCCCcccCCcccccC-------------
Q 002105          139 LSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSIS--NITSLQIFTLASNQLIGSIPREIGQL-------------  203 (966)
Q Consensus       139 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l-------------  203 (966)
                      |++|.+++..|..++++++|++|++++|.+++..+..+.  .+++|++|++++|.+++..|..+..+             
T Consensus       128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l  207 (680)
T 1ziw_A          128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL  207 (680)
T ss_dssp             CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred             CCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc
Confidence            999999999999999999999999999999987776554  56899999999999998888777654             


Q ss_pred             --------------CcceEEEccCCCCCCCCCcCccCCCC--CCEEEeecccccccCCcCCCCCCccceEeccccccCCC
Q 002105          204 --------------RNLKWIYLGYNNLSGEIPKEIGDLTS--LNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGS  267 (966)
Q Consensus       204 --------------~~L~~L~L~~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  267 (966)
                                    ++|+.|++++|.+++..|..|..++.  |++|++++|++++..|..|+++++|++|++++|++++.
T Consensus       208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  287 (680)
T 1ziw_A          208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL  287 (680)
T ss_dssp             HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE
T ss_pred             ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc
Confidence                          45778888889998888899988865  99999999999998899999999999999999999999


Q ss_pred             CChhhhcCCCCCEEEccCCcCcc-----cCch----hhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcc
Q 002105          268 IPKSILGLKSLVSFDLSDNYLSG-----EIPE----EVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSG  338 (966)
Q Consensus       268 ~p~~l~~l~~L~~L~Ls~N~l~~-----~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  338 (966)
                      .|..+.++++|++|++++|...+     .+|.    .+..+++|+.|++++|.+++..+..|.++++|++|++++|.+.+
T Consensus       288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~  367 (680)
T 1ziw_A          288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL  367 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCC
T ss_pred             ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhh
Confidence            99999999999999999876554     2333    67889999999999999999989999999999999999998643


Q ss_pred             cC--CccccC--CCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCC-CccccCccCceeeccccccCCcCC
Q 002105          339 EI--PSNLGK--QNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIP-NSLSTCKSLRRVRLQNNRLSGELS  413 (966)
Q Consensus       339 ~~--p~~~~~--~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~  413 (966)
                      ..  +..|..  .++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+| ..|.++++|++|++++|++.+..+
T Consensus       368 ~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  447 (680)
T 1ziw_A          368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR  447 (680)
T ss_dssp             CEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT
T ss_pred             hhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh
Confidence            22  223332  3589999999999999999999999999999999999998776 689999999999999999999999


Q ss_pred             hhhcCCCcccEEcccCCCCC--CccCcchhccCCCcEecCCCCcCCccCCC-CcCcccccccccccccccccCC------
Q 002105          414 SEFTRLPLVYFLDISGNDLS--GRIGEQKWEMTSLQMLNLAGNNFSGKLPD-SFGSDQLENLDLSENRFSGTIP------  484 (966)
Q Consensus       414 ~~~~~l~~L~~LdLs~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~L~~L~Ls~N~l~~~~p------  484 (966)
                      ..|..+++|+.|++++|.+.  +.+|..+..+++|+.|+|++|++++..|. +.++++|++|++++|++++..+      
T Consensus       448 ~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  527 (680)
T 1ziw_A          448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG  527 (680)
T ss_dssp             TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS
T ss_pred             hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC
Confidence            99999999999999999987  57888899999999999999999988777 4578999999999999986532      


Q ss_pred             --CcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccc-c
Q 002105          485 --RSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLG-R  561 (966)
Q Consensus       485 --~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~-~  561 (966)
                        ..|..+++|+.|+|++|+++...+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..+. .
T Consensus       528 ~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  607 (680)
T 1ziw_A          528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA  607 (680)
T ss_dssp             CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHH
T ss_pred             cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccc
Confidence              2478999999999999999966566799999999999999999987778889999999999999999999888887 7


Q ss_pred             CCCCCeeeCcCCcccccCCC
Q 002105          562 VASLVQVNISHNHFHGSLPS  581 (966)
Q Consensus       562 l~~L~~l~ls~N~l~g~ip~  581 (966)
                      +++|+.+++++|++.+.++.
T Consensus       608 ~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          608 FRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             HTTCSEEECTTCCCCBCCCC
T ss_pred             ccccCEEEccCCCcccCCcc
Confidence            89999999999999998875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.9e-56  Score=541.86  Aligned_cols=512  Identities=20%  Similarity=0.209  Sum_probs=343.6

Q ss_pred             EEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCC--CCCCCCCcEEeCC
Q 002105           63 VNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--IGSLSRLEILDLS  140 (966)
Q Consensus        63 v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls  140 (966)
                      ++.|||++|.+++..+.+|.++++|++|+|++|++.+ +++..|..+++|++|+|++|++++..|  ++.+++|++|+|+
T Consensus        35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             CcEEEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            4445555555554444445555555555555555442 323333444555555555555443222  3444555555555


Q ss_pred             CCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcce--EEEccCCCCCC
Q 002105          141 NNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLK--WIYLGYNNLSG  218 (966)
Q Consensus       141 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~L~~N~l~~  218 (966)
                      +|.+++..|..++.+++|++|+|++|.+.+..+..+..+++|++|++++|.+++..|..++.+++|+  .|++++|.+++
T Consensus       114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~  193 (606)
T 3t6q_A          114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG  193 (606)
T ss_dssp             TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred             ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence            5555444344444555555555555544442222222344555555555554444444444444444  44445555444


Q ss_pred             CCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccC-----CCCChhhhcCC--CCCEEEccCCcCccc
Q 002105          219 EIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLT-----GSIPKSILGLK--SLVSFDLSDNYLSGE  291 (966)
Q Consensus       219 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~--~L~~L~Ls~N~l~~~  291 (966)
                      ..|..+.. .+|++|++++|.   .++..+..+.++....+..+.+.     ...+..+.++.  +|+.|++++|.+++.
T Consensus       194 ~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~  269 (606)
T 3t6q_A          194 IEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI  269 (606)
T ss_dssp             ECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred             cChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence            33333322 344445544443   11222222222222222111111     11223333333  688888888888877


Q ss_pred             CchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCC-ccC
Q 002105          292 IPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPET-LCD  370 (966)
Q Consensus       292 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~-~~~  370 (966)
                      .+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|.. +..
T Consensus       270 ~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (606)
T 3t6q_A          270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN  348 (606)
T ss_dssp             CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred             CHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence            7777888888888888888888 67778888888889999888888877888888888889999888888766654 778


Q ss_pred             CCCccEEEccCCCCCCCC--CCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcc-hhccCCCc
Q 002105          371 SGSLFKLILFSNSLEGKI--PNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQ-KWEMTSLQ  447 (966)
Q Consensus       371 ~~~L~~L~l~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~-~~~l~~L~  447 (966)
                      +++|+.|++++|.+++..  |..+..+++|++|++++|++.+..|..|..+++|++|++++|++++..+.. +..+++|+
T Consensus       349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  428 (606)
T 3t6q_A          349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK  428 (606)
T ss_dssp             CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred             cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence            888888888888888765  777888888899999988888888888888888899999888888776544 77788888


Q ss_pred             EecCCCCcCCccCCCC-cCccccccccccccccccc---CCCcccCcCCCCEEEccCCccCCCChhhccccccccccccC
Q 002105          448 MLNLAGNNFSGKLPDS-FGSDQLENLDLSENRFSGT---IPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLS  523 (966)
Q Consensus       448 ~L~Ls~N~l~~~~p~~-~~~~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  523 (966)
                      +|++++|.+++..|.. ..+++|++|++++|++++.   .+..+..+++|+.|++++|++++..|..|..+++|+.|+|+
T Consensus       429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  508 (606)
T 3t6q_A          429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS  508 (606)
T ss_dssp             EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECC
Confidence            9999988888877774 4678888889998888763   33568888889999999998888888888888899999999


Q ss_pred             CceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCcccccCCC
Q 002105          524 NNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPS  581 (966)
Q Consensus       524 ~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~ip~  581 (966)
                      +|++++.+|..+..++.| .|+|++|++++.+|..+..+++|+.+++++|++.+.++.
T Consensus       509 ~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             SSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             CCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            999888888888888888 899999999888888888888888999999988876653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.7e-56  Score=556.09  Aligned_cols=518  Identities=25%  Similarity=0.245  Sum_probs=453.1

Q ss_pred             CcccceeeCCCCCEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCC--
Q 002105           50 CKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--  127 (966)
Q Consensus        50 c~w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~--  127 (966)
                      |.|..|-+ -..+++.|||++|.|++..+.+|.++++|++|||++|.+.+.|+++.|..+++|++|+|++|.+++..|  
T Consensus        14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~   92 (844)
T 3j0a_A           14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA   92 (844)
T ss_dssp             CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred             CCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence            56777777 456899999999999999999999999999999999988878988888999999999999999987544  


Q ss_pred             CCCCCCCcEEeCCCCCCCCcCCCC--cCCCCCcCEEEccCCCCcccCC-cCCCCCCCCCEEEccCCCCcccCCcccccC-
Q 002105          128 IGSLSRLEILDLSNNMLSGKIPEE--IGSFSGLKVLDLGGNVLVGEIP-LSISNITSLQIFTLASNQLIGSIPREIGQL-  203 (966)
Q Consensus       128 ~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-  203 (966)
                      ++.+++|++|+|++|.+++.+|..  +.++++|++|+|++|.+.+..+ ..|+++++|++|++++|.+++..|..++.+ 
T Consensus        93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~  172 (844)
T 3j0a_A           93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ  172 (844)
T ss_dssp             SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred             ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence            689999999999999999877665  9999999999999999987655 579999999999999999999999999888 


Q ss_pred             -CcceEEEccCCCCCCCCCcCccCCCC------CCEEEeecccccccCCcCCCCC---CccceEecccc---------cc
Q 002105          204 -RNLKWIYLGYNNLSGEIPKEIGDLTS------LNHLDLVYNNLTGQIPPSFGNL---SNLRYLFLYQN---------KL  264 (966)
Q Consensus       204 -~~L~~L~L~~N~l~~~~p~~l~~l~~------L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~n---------~l  264 (966)
                       ++|+.|+++.|.+.+..|..++.+.+      |++|++++|.+++..|..+...   ++++.|.++.+         .+
T Consensus       173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l  252 (844)
T 3j0a_A          173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI  252 (844)
T ss_dssp             HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred             CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence             89999999999999988888777765      9999999999998888776543   56788887633         33


Q ss_pred             CCCCChhhhcC--CCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCc
Q 002105          265 TGSIPKSILGL--KSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPS  342 (966)
Q Consensus       265 ~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~  342 (966)
                      .+..+..|.++  ++|+.|++++|.+.+..|..+..+++|+.|+|++|++++..|..|.++++|++|+|++|.+++..|.
T Consensus       253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  332 (844)
T 3j0a_A          253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS  332 (844)
T ss_dssp             TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred             CCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH
Confidence            33334445554  7899999999999998899999999999999999999998899999999999999999999988899


Q ss_pred             cccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcc
Q 002105          343 NLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLV  422 (966)
Q Consensus       343 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  422 (966)
                      .|..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++.     ..+++|+.|++++|+++.. |..   ...+
T Consensus       333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l-~~~---~~~l  403 (844)
T 3j0a_A          333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTL-PKI---NLTA  403 (844)
T ss_dssp             SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCC-CCC---CTTC
T ss_pred             HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccc-ccc---cccc
Confidence            999999999999999999988888999999999999999999853     3378999999999999844 432   5678


Q ss_pred             cEEcccCCCCCCccC-cchhccCCCcEecCCCCcCCccCCC--CcCccccccccccccccc-----ccCCCcccCcCCCC
Q 002105          423 YFLDISGNDLSGRIG-EQKWEMTSLQMLNLAGNNFSGKLPD--SFGSDQLENLDLSENRFS-----GTIPRSFGRLSELM  494 (966)
Q Consensus       423 ~~LdLs~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~  494 (966)
                      +.|++++|++++... ..+..+++|+.|+|++|++++..+.  ....++|+.|+|++|.++     +..|..|..+++|+
T Consensus       404 ~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~  483 (844)
T 3j0a_A          404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ  483 (844)
T ss_dssp             CEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEE
T ss_pred             ceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccccc
Confidence            999999999997533 2345789999999999999977655  345689999999999997     45567789999999


Q ss_pred             EEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCc
Q 002105          495 QLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNH  574 (966)
Q Consensus       495 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~  574 (966)
                      .|+|++|++++.+|..|.++++|+.|+|++|+|++..|..+.  ++|+.|||++|++++.+|..|.   +|+.+++++|+
T Consensus       484 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np  558 (844)
T 3j0a_A          484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNK  558 (844)
T ss_dssp             CCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEEC
T ss_pred             EEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCC
Confidence            999999999999999999999999999999999988777776  8999999999999999998764   78999999999


Q ss_pred             ccccCCCC
Q 002105          575 FHGSLPST  582 (966)
Q Consensus       575 l~g~ip~~  582 (966)
                      +.|.++..
T Consensus       559 ~~C~c~~~  566 (844)
T 3j0a_A          559 FICECELS  566 (844)
T ss_dssp             CCCSSSCC
T ss_pred             cccccccH
Confidence            99988754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.4e-58  Score=554.05  Aligned_cols=496  Identities=19%  Similarity=0.297  Sum_probs=316.0

Q ss_pred             HHHHHHHHHHhhcCCCCC--------CCCCCCCCCCCCCcc---cceeeCCCCCEEEEEcCCCCccccccccccCCCCCC
Q 002105           20 GAELELLLSFKSTVNDPY--------NFLSNWDSSVTFCKW---NGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVE   88 (966)
Q Consensus        20 ~~~~~~Ll~~k~~~~~~~--------~~l~~w~~~~~~c~w---~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~   88 (966)
                      ..|++||.+|+.++.++.        ....+|+.+.+||.|   .||+|+..+||+.|+|++++++|.+|+++++|++|+
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~  108 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELE  108 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCC
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccce
Confidence            368999999999986442        123489988899999   999999888999999999999999999999999999


Q ss_pred             EEEcCCCCC------cc------ccChhhhhcCCCCcEEECCCCCCCCCCCC--C-CCCCCcEEeCCCCCCCCcCCCCcC
Q 002105           89 SINLSSNQL------SG------EIPSDIFSSSNSLRFLNLSNNNFTGPVPI--G-SLSRLEILDLSNNMLSGKIPEEIG  153 (966)
Q Consensus        89 ~L~Ls~N~l------~g------~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~--~-~l~~L~~L~Ls~N~l~~~~p~~~~  153 (966)
                      +|||++|.+      .|      .+|...   +..|+ +++++|.+.+..|.  . .+..+..+++....+..      .
T Consensus       109 ~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~------~  178 (636)
T 4eco_A          109 VLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK------S  178 (636)
T ss_dssp             EEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC------C
T ss_pred             EEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc------c
Confidence            999999976      34      566655   35566 77777777764442  1 12223333333222211      0


Q ss_pred             CCCCcCEEEcc--CCCCcccCCcCCCCCCCCCEEEccCCCCccc-----------------CCcccc--cCCcceEEEcc
Q 002105          154 SFSGLKVLDLG--GNVLVGEIPLSISNITSLQIFTLASNQLIGS-----------------IPREIG--QLRNLKWIYLG  212 (966)
Q Consensus       154 ~l~~L~~L~L~--~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~L~  212 (966)
                      ....++.+.+.  .|.++| +|..|+++++|++|+|++|.+++.                 +|..++  ++++|++|+|+
T Consensus       179 ~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~  257 (636)
T 4eco_A          179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY  257 (636)
T ss_dssp             CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred             cccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence            11112222222  345555 555555555555555555555553                 566655  66666666666


Q ss_pred             CCCCCCCCCcCccCCCCCCEEEeeccc-ccc-cCCcCCCCC------CccceEeccccccCCCCCh--hhhcCCCCCEEE
Q 002105          213 YNNLSGEIPKEIGDLTSLNHLDLVYNN-LTG-QIPPSFGNL------SNLRYLFLYQNKLTGSIPK--SILGLKSLVSFD  282 (966)
Q Consensus       213 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~  282 (966)
                      +|.+.+.+|..|+++++|++|++++|+ +++ .+|..++++      ++|++|++++|+++ .+|.  .+.++++|++|+
T Consensus       258 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~  336 (636)
T 4eco_A          258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLE  336 (636)
T ss_dssp             CCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEE
T ss_pred             CCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEe
Confidence            666666666666666666666666665 555 555555554      56666666666665 5555  566666666666


Q ss_pred             ccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCC-ccEEEccCCcCcccCCccccCCC--CCcEEEccCCc
Q 002105          283 LSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPK-LQVLQLWSNQFSGEIPSNLGKQN--NLTVIDLSTNF  359 (966)
Q Consensus       283 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~L~~N~l~~~~p~~~~~~~--~L~~L~Ls~N~  359 (966)
                      +++|.++|.+| .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+....  +|+.|++++|.
T Consensus       337 L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~  413 (636)
T 4eco_A          337 CLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNE  413 (636)
T ss_dssp             CCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred             CcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCc
Confidence            66666666666 5666666666666666666 55555666666 666666666665 5555555443  56666666666


Q ss_pred             ccccCCCCcc-------CCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCC-------cccEE
Q 002105          360 LTGKIPETLC-------DSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLP-------LVYFL  425 (966)
Q Consensus       360 l~~~~p~~~~-------~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------~L~~L  425 (966)
                      +++.+|..+.       .+.+|+.|++++|+++...+..+..+++|++|+|++|+++...+..+....       +|++|
T Consensus       414 l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L  493 (636)
T 4eco_A          414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSI  493 (636)
T ss_dssp             TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEE
T ss_pred             CCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEE
Confidence            6666666655       555666666666666633333344567777777777777633333333332       77777


Q ss_pred             cccCCCCCCccCcchh--ccCCCcEecCCCCcCCccCCC-CcCcccccccccccccccccCCCcccCcCCCCEEEccCCc
Q 002105          426 DISGNDLSGRIGEQKW--EMTSLQMLNLAGNNFSGKLPD-SFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNK  502 (966)
Q Consensus       426 dLs~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~-~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  502 (966)
                      +|++|+++ .+|..+.  .+++|+.|+|++|++++ +|. +..+++|+.|+|++|+                  ++++|+
T Consensus       494 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~------------------~ls~N~  553 (636)
T 4eco_A          494 DLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR------------------DAQGNR  553 (636)
T ss_dssp             ECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB------------------CTTCCB
T ss_pred             ECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc------------------ccccCc
Confidence            77777777 4555554  66677777766666665 343 4445555555555544                  345677


Q ss_pred             cCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCCcCcc
Q 002105          503 LFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSG  553 (966)
Q Consensus       503 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g  553 (966)
                      +.+.+|..+..+++|+.|+|++|++ +.+|..+.  ++|+.|||++|++..
T Consensus       554 l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          554 TLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             ccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence            7777777777777777777777777 56776655  678888888886654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.1e-56  Score=552.66  Aligned_cols=514  Identities=18%  Similarity=0.251  Sum_probs=295.7

Q ss_pred             CCcHHHHHHHHHHhhcCCCCCCCCCCCCCCC-----CC--Ccc------------cceeeCCCCCEEEEEcCCCCccccc
Q 002105           17 TCHGAELELLLSFKSTVNDPYNFLSNWDSSV-----TF--CKW------------NGISCQNSTHVNAIELSAKNISGKI   77 (966)
Q Consensus        17 ~~~~~~~~~Ll~~k~~~~~~~~~l~~w~~~~-----~~--c~w------------~gv~c~~~~~v~~L~L~~~~l~~~~   77 (966)
                      ++..+|++||++||+++.+|     +|+.+.     +|  |.|            .||+|+..++|+.|+|++++++|.+
T Consensus       265 ~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i  339 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV  339 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred             ccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence            35568999999999999877     786443     55  999            9999998789999999999999999


Q ss_pred             cccccCCCCCCEEEc-CCCCCccccChhhhhcCCCCc--------E------EEC-CCCCCCC-------------CCCC
Q 002105           78 SSSIFHLPHVESINL-SSNQLSGEIPSDIFSSSNSLR--------F------LNL-SNNNFTG-------------PVPI  128 (966)
Q Consensus        78 ~~~~~~l~~L~~L~L-s~N~l~g~ip~~~~~~l~~L~--------~------L~L-s~N~l~~-------------~~~~  128 (966)
                      |+++++|++|++||| ++|.++|..|.........+.        .      ++. ....+.+             ++..
T Consensus       340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~  419 (876)
T 4ecn_A          340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK  419 (876)
T ss_dssp             CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred             chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence            999999999999999 999998875432110000000        0      000 0000000             0001


Q ss_pred             CCCCCCcEEeCCC--CCCCCcCCCCcCCCCCcCEEEccCCCCcc-cCCcCCCCCCCCCEEEccCCCCcccCCcccc--cC
Q 002105          129 GSLSRLEILDLSN--NMLSGKIPEEIGSFSGLKVLDLGGNVLVG-EIPLSISNITSLQIFTLASNQLIGSIPREIG--QL  203 (966)
Q Consensus       129 ~~l~~L~~L~Ls~--N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l  203 (966)
                      .....++.+.+..  |++++ +|..|+++++|++|+|++|.+++ .+|..+..        .+.|.+.+.+|..++  ++
T Consensus       420 ~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~--------~s~n~~~g~iP~~l~f~~L  490 (876)
T 4ecn_A          420 DSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED--------ANSDYAKQYENEELSWSNL  490 (876)
T ss_dssp             CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC--------TTSHHHHHHTTSCCCGGGC
T ss_pred             ccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccc--------cccccccccCChhhhhccC
Confidence            1112222222322  45554 45555555555555555555554 12211111        011222234555554  55


Q ss_pred             CcceEEEccCCCCCCCCCcCccCCCCCCEEEeeccc-ccc-cCCcCCCCCC-------ccceEeccccccCCCCCh--hh
Q 002105          204 RNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNN-LTG-QIPPSFGNLS-------NLRYLFLYQNKLTGSIPK--SI  272 (966)
Q Consensus       204 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l~-------~L~~L~L~~n~l~~~~p~--~l  272 (966)
                      ++|++|+|++|.+.+.+|..|+++++|++|+|++|+ +++ .+|..+++++       +|++|+|++|+++ .+|.  .+
T Consensus       491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l  569 (876)
T 4ecn_A          491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL  569 (876)
T ss_dssp             TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH
T ss_pred             CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh
Confidence            555555555555555555555555555555555554 554 4444433333       5555555555554 4444  45


Q ss_pred             hcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCC-ccEEEccCCcCcccCCccccCCCC--
Q 002105          273 LGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPK-LQVLQLWSNQFSGEIPSNLGKQNN--  349 (966)
Q Consensus       273 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~L~~N~l~~~~p~~~~~~~~--  349 (966)
                      .++++|+.|+|++|.++ .+| .+..+++|+.|+|++|.++ .+|..+..+++ |+.|+|++|.++ .+|..+..+..  
T Consensus       570 ~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~  645 (876)
T 4ecn_A          570 QKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYV  645 (876)
T ss_dssp             TTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSC
T ss_pred             hcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCC
Confidence            55555555555555554 444 4444455555555555544 44444444444 555555555544 34444433322  


Q ss_pred             CcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccc--cCccCceeeccccccCCcCChhhcCCCcccEEcc
Q 002105          350 LTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLS--TCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDI  427 (966)
Q Consensus       350 L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdL  427 (966)
                      |+.|+|++|.+++.+|...                     ..+.  .+++|+.|+|++|+++...+..+..+++|+.|+|
T Consensus       646 L~~L~Ls~N~l~g~ip~l~---------------------~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~L  704 (876)
T 4ecn_A          646 MGSVDFSYNKIGSEGRNIS---------------------CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL  704 (876)
T ss_dssp             EEEEECCSSCTTTTSSSCS---------------------SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEEC
T ss_pred             CCEEECcCCcCCCccccch---------------------hhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEEC
Confidence            4444444444444333211                     1111  2336667777777776444444456677777777


Q ss_pred             cCCCCCCccCcchhc--------cCCCcEecCCCCcCCccCCC-Cc--CcccccccccccccccccCCCcccCcCCCCEE
Q 002105          428 SGNDLSGRIGEQKWE--------MTSLQMLNLAGNNFSGKLPD-SF--GSDQLENLDLSENRFSGTIPRSFGRLSELMQL  496 (966)
Q Consensus       428 s~N~l~~~~~~~~~~--------l~~L~~L~Ls~N~l~~~~p~-~~--~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  496 (966)
                      ++|+++ .+|.....        +++|+.|+|++|+++ .+|. ++  .+++|+.|+|++|++++ +|..+..+++|+.|
T Consensus       705 s~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L  781 (876)
T 4ecn_A          705 SNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF  781 (876)
T ss_dssp             CSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred             CCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence            777776 33333322        237888888888877 4454 44  66788888888888876 67778888888888


Q ss_pred             EccC------CccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeC
Q 002105          497 KISR------NKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNI  570 (966)
Q Consensus       497 ~Ls~------N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~l  570 (966)
                      +|++      |++.+.+|..+..+++|+.|+|++|++ +.+|..+.  ++|+.|||++|++....+..+.....+..+.+
T Consensus       782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L  858 (876)
T 4ecn_A          782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVL  858 (876)
T ss_dssp             ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEE
T ss_pred             ECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheee
Confidence            8876      666677777777777777777777777 56666654  46777777777776655555544444455555


Q ss_pred             cCCccc
Q 002105          571 SHNHFH  576 (966)
Q Consensus       571 s~N~l~  576 (966)
                      .+|.+.
T Consensus       859 ~~n~~~  864 (876)
T 4ecn_A          859 LYDKTQ  864 (876)
T ss_dssp             ECCTTS
T ss_pred             cCCCcc
Confidence            555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.6e-55  Score=530.63  Aligned_cols=489  Identities=22%  Similarity=0.240  Sum_probs=401.9

Q ss_pred             CCEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCC--CCCCCCCCCCcEEe
Q 002105           61 THVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTG--PVPIGSLSRLEILD  138 (966)
Q Consensus        61 ~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~l~~L~~L~  138 (966)
                      ++++.|+|++|.+++..+.+|.++++|++|+|++|++.+ +++..+..+++|++|+|++|.+++  +.+++.+++|++|+
T Consensus        57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~  135 (606)
T 3t6q_A           57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY  135 (606)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE-ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred             ccceEEECCCCccceeChhhccCccccCeeeCCCCcccc-cChhhhcccccccEeeccccCcccCCcchhccCCcccEEE
Confidence            478999999999999989999999999999999999995 544567778999999999999997  56789999999999


Q ss_pred             CCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCC--EEEccCCCCcccCCcccccCCcceEEEccCCCC
Q 002105          139 LSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQ--IFTLASNQLIGSIPREIGQLRNLKWIYLGYNNL  216 (966)
Q Consensus       139 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l  216 (966)
                      |++|.+++..+..+..+++|++|++++|.+.+..|..|+.+++|+  .|++++|.+.+..|..+. ..+|++|++++|. 
T Consensus       136 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~-  213 (606)
T 3t6q_A          136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ-  213 (606)
T ss_dssp             CCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS-
T ss_pred             CCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCch-
Confidence            999999985545555699999999999999988888899999999  999999999987777665 4689999999986 


Q ss_pred             CCCCCcCccCCCCCCEEEeecccccc-----cCCcCCCCCC--ccceEeccccccCCCCChhhhcCCCCCEEEccCCcCc
Q 002105          217 SGEIPKEIGDLTSLNHLDLVYNNLTG-----QIPPSFGNLS--NLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLS  289 (966)
Q Consensus       217 ~~~~p~~l~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~--~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  289 (966)
                        .++..+..+..+....+..+.+..     ..+..|..+.  +|++|++++|.+++..+..|..+++|++|++++|.++
T Consensus       214 --~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  291 (606)
T 3t6q_A          214 --NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS  291 (606)
T ss_dssp             --CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred             --hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence              344445555555544444333221     1122333333  6788888888888777777888888888888888887


Q ss_pred             ccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCcc-ccCCCCCcEEEccCCcccccC--CC
Q 002105          290 GEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSN-LGKQNNLTVIDLSTNFLTGKI--PE  366 (966)
Q Consensus       290 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~L~~L~Ls~N~l~~~~--p~  366 (966)
                       .+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.+|.. +..+++|+.|++++|.+++..  |.
T Consensus       292 -~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  370 (606)
T 3t6q_A          292 -ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL  370 (606)
T ss_dssp             -CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred             -CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence             66777888888888888888888777777888888888888888887666553 778888888888888887765  67


Q ss_pred             CccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCCh-hhcCCCcccEEcccCCCCCCccCcchhccCC
Q 002105          367 TLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSS-EFTRLPLVYFLDISGNDLSGRIGEQKWEMTS  445 (966)
Q Consensus       367 ~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~  445 (966)
                      .+..+++|+.|++++|++.+..|..+..+++|++|++++|++.+..+. .+..+++|++|++++|.+++..+..+..+++
T Consensus       371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  450 (606)
T 3t6q_A          371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA  450 (606)
T ss_dssp             TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred             hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence            778888888888888888888888888888888888888888877654 4788888888888888888888888888888


Q ss_pred             CcEecCCCCcCCcc-CC--C-CcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccc
Q 002105          446 LQMLNLAGNNFSGK-LP--D-SFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLD  521 (966)
Q Consensus       446 L~~L~Ls~N~l~~~-~p--~-~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  521 (966)
                      |++|++++|++++. +|  . +..+++|++|++++|++++..|..|..+++|+.|+|++|++++..|..+..+++| .|+
T Consensus       451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~  529 (606)
T 3t6q_A          451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN  529 (606)
T ss_dssp             CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred             CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence            88888888888763 22  2 4466889999999999998889999999999999999999999999999999999 999


Q ss_pred             cCCceeccccCccCCCCCCCcEEeCCCCcCcccCC
Q 002105          522 LSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIP  556 (966)
Q Consensus       522 Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p  556 (966)
                      |++|++++.+|..+..+++|+.|++++|++++..+
T Consensus       530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999998888888999999999999999987655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.8e-55  Score=527.69  Aligned_cols=510  Identities=21%  Similarity=0.204  Sum_probs=416.5

Q ss_pred             CEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCC--CCCCCCCcEEeC
Q 002105           62 HVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--IGSLSRLEILDL  139 (966)
Q Consensus        62 ~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L  139 (966)
                      +++.|+|++|.+++..+.+|.++++|++|+|++|+++ .+++..|..+++|++|+|++|.+++..|  ++.+++|++|+|
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            5778888888888777777888888888888888887 4555556667888888888888876433  577888888888


Q ss_pred             CCCCCCCcCCCCcCCCCCcCEEEccCCCCcc-cCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcce----EEEccCC
Q 002105          140 SNNMLSGKIPEEIGSFSGLKVLDLGGNVLVG-EIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLK----WIYLGYN  214 (966)
Q Consensus       140 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L~~N  214 (966)
                      ++|.+++..+..++++++|++|+|++|.+.+ .+|..|+++++|++|++++|++++..|..++.+++|+    +|++++|
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n  191 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN  191 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence            8888877666778888888888888888765 5677788888888888888888877777777766654    6888888


Q ss_pred             CCCCCCCcCccCCCCCCEEEeeccccc-ccCCcCCCCCCccceEeccccccCC------CCChhhhcCC--CCCEEEc-c
Q 002105          215 NLSGEIPKEIGDLTSLNHLDLVYNNLT-GQIPPSFGNLSNLRYLFLYQNKLTG------SIPKSILGLK--SLVSFDL-S  284 (966)
Q Consensus       215 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~------~~p~~l~~l~--~L~~L~L-s  284 (966)
                      .+++..+..+... +|++|++++|.+. +.+|..++++++|+.+++..+.+.+      ..+..+.++.  +++.+++ .
T Consensus       192 ~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  270 (606)
T 3vq2_A          192 PIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY  270 (606)
T ss_dssp             CCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred             CcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence            8775554444444 7888888888776 3456667777778777776554432      1112222222  3556666 7


Q ss_pred             CCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccC
Q 002105          285 DNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKI  364 (966)
Q Consensus       285 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~  364 (966)
                      .|.+.+.+|. +..+++|+.|++++|.+.. +| .+..+++|+.|++++|.+ +.+| .+ .+++|+.|++++|...+.+
T Consensus       271 ~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~  344 (606)
T 3vq2_A          271 TNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF  344 (606)
T ss_dssp             CTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC
T ss_pred             cccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch
Confidence            7888888877 8899999999999999974 55 788999999999999999 6788 45 8999999999999766544


Q ss_pred             CCCccCCCCccEEEccCCCCCCC--CCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccC-cchh
Q 002105          365 PETLCDSGSLFKLILFSNSLEGK--IPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIG-EQKW  441 (966)
Q Consensus       365 p~~~~~~~~L~~L~l~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~-~~~~  441 (966)
                        .+..+++|+.|++++|++++.  +|..+..+++|++|++++|.+.+ +|..|..+++|+.|++++|++.+..+ ..+.
T Consensus       345 --~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  421 (606)
T 3vq2_A          345 --KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL  421 (606)
T ss_dssp             --CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred             --hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh
Confidence              567889999999999999876  47888999999999999999986 45788999999999999999998887 6788


Q ss_pred             ccCCCcEecCCCCcCCccCCC-CcCcccccccccccccccc-cCCCcccCcCCCCEEEccCCccCCCChhhccccccccc
Q 002105          442 EMTSLQMLNLAGNNFSGKLPD-SFGSDQLENLDLSENRFSG-TIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVS  519 (966)
Q Consensus       442 ~l~~L~~L~Ls~N~l~~~~p~-~~~~~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  519 (966)
                      .+++|++|++++|.+++..|. +..+++|++|++++|.+++ .+|..|..+++|+.|+|++|++++..|..+..+++|+.
T Consensus       422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  501 (606)
T 3vq2_A          422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL  501 (606)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence            999999999999999998887 4577999999999999998 47899999999999999999999999999999999999


Q ss_pred             cccCCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCC-CCCeeeCcCCcccccCCCCC
Q 002105          520 LDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVA-SLVQVNISHNHFHGSLPSTG  583 (966)
Q Consensus       520 L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~-~L~~l~ls~N~l~g~ip~~~  583 (966)
                      |+|++|++++.+|..+..+++|+.|||++|+++ .+|..+..++ +|+++++++|++.+.++...
T Consensus       502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~  565 (606)
T 3vq2_A          502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQK  565 (606)
T ss_dssp             EECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred             EECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHH
Confidence            999999999999999999999999999999999 6777798887 59999999999999887543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.1e-53  Score=517.47  Aligned_cols=485  Identities=21%  Similarity=0.247  Sum_probs=424.8

Q ss_pred             CCCEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCC--CCCCCCCCCcEE
Q 002105           60 STHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGP--VPIGSLSRLEIL  137 (966)
Q Consensus        60 ~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L  137 (966)
                      .++++.|+|++|.+++..+.+|.++++|++|+|++|.+++ +++..|..+++|++|+|++|.+++.  .+++.+++|++|
T Consensus        55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  133 (606)
T 3vq2_A           55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL  133 (606)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC-CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred             CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc-cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence            3489999999999999889999999999999999999984 5455677789999999999999863  457999999999


Q ss_pred             eCCCCCCCC-cCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCC----EEEccCCCCcccCCcccccCCcceEEEcc
Q 002105          138 DLSNNMLSG-KIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQ----IFTLASNQLIGSIPREIGQLRNLKWIYLG  212 (966)
Q Consensus       138 ~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  212 (966)
                      +|++|.+++ .+|..++++++|++|+|++|.+.+..|..|+.+++|+    +|++++|.+++..+..+... +|++|+++
T Consensus       134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~  212 (606)
T 3vq2_A          134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLR  212 (606)
T ss_dssp             ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEE
T ss_pred             eCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeecc
Confidence            999999986 6799999999999999999999998888888777665    89999999997666655544 99999999


Q ss_pred             CCCCC-CCCCcCccCCCCCCEEEeeccccccc------CCcCCCCCC--ccceEec-cccccCCCCChhhhcCCCCCEEE
Q 002105          213 YNNLS-GEIPKEIGDLTSLNHLDLVYNNLTGQ------IPPSFGNLS--NLRYLFL-YQNKLTGSIPKSILGLKSLVSFD  282 (966)
Q Consensus       213 ~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~------~p~~~~~l~--~L~~L~L-~~n~l~~~~p~~l~~l~~L~~L~  282 (966)
                      +|.++ +..|..+.+++.|+.+++..+.+.+.      .+..+..+.  +++.+++ ..|.+.+.+|. +..+++|+.|+
T Consensus       213 ~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~  291 (606)
T 3vq2_A          213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMS  291 (606)
T ss_dssp             SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEE
T ss_pred             CCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEE
Confidence            99987 45677789999999999987665431      112222332  4667777 67788887777 99999999999


Q ss_pred             ccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccc
Q 002105          283 LSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTG  362 (966)
Q Consensus       283 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~  362 (966)
                      +++|.+. .+| .+..+++|+.|++++|.+ +.+|. + .+++|+.|++++|...+.+  .+..+++|+.|++++|.+++
T Consensus       292 l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~  364 (606)
T 3vq2_A          292 LAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF  364 (606)
T ss_dssp             EESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred             ecCccch-hhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence            9999996 455 888999999999999999 67884 5 8999999999999766554  67789999999999999987


Q ss_pred             c--CCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCC-hhhcCCCcccEEcccCCCCCCccCcc
Q 002105          363 K--IPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELS-SEFTRLPLVYFLDISGNDLSGRIGEQ  439 (966)
Q Consensus       363 ~--~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~LdLs~N~l~~~~~~~  439 (966)
                      .  +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.+..+ ..|..+++|++|++++|.+++..|..
T Consensus       365 ~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  443 (606)
T 3vq2_A          365 SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI  443 (606)
T ss_dssp             EEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred             CcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh
Confidence            6  48888999999999999999886 56889999999999999999999988 78999999999999999999999999


Q ss_pred             hhccCCCcEecCCCCcCCcc-CCC-CcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccc
Q 002105          440 KWEMTSLQMLNLAGNNFSGK-LPD-SFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKL  517 (966)
Q Consensus       440 ~~~l~~L~~L~Ls~N~l~~~-~p~-~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  517 (966)
                      +..+++|++|++++|.+++. +|. +..+++|++|++++|++++..|..|..+++|+.|+|++|++++.+|..+..+++|
T Consensus       444 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  523 (606)
T 3vq2_A          444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL  523 (606)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred             hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence            99999999999999999984 666 4578999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCceeccccCccCCCCC-CCcEEeCCCCcCcccCC
Q 002105          518 VSLDLSNNQLSGHIPASLSEMP-VLGQLDLSENQLSGKIP  556 (966)
Q Consensus       518 ~~L~Ls~N~l~~~~p~~l~~l~-~L~~LdLs~N~l~g~~p  556 (966)
                      +.|+|++|+++ .+|..+..++ +|+.|++++|++.+..+
T Consensus       524 ~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          524 STLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            99999999999 6777798887 69999999999997655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-52  Score=523.12  Aligned_cols=514  Identities=21%  Similarity=0.208  Sum_probs=446.2

Q ss_pred             EEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCC---CCCCCCCCcEEeCCC
Q 002105           65 AIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPV---PIGSLSRLEILDLSN  141 (966)
Q Consensus        65 ~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~l~~L~~L~Ls~  141 (966)
                      ..|.++++++.. |.   -.++|++|||++|.|++ +++..|..+++|++|+|++|.+.+.+   .++++++|++|+|++
T Consensus         8 ~~dcs~~~L~~v-P~---lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            8 IAFYRFCNLTQV-PQ---VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEESCCCSSCC-CS---SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             EEEccCCCCCCC-CC---CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            346667788754 43   45789999999999984 55556788899999999999777644   368999999999999


Q ss_pred             CCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcC--CCCCCCCCEEEccCCCCcccCC-cccccCCcceEEEccCCCCCC
Q 002105          142 NMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLS--ISNITSLQIFTLASNQLIGSIP-REIGQLRNLKWIYLGYNNLSG  218 (966)
Q Consensus       142 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~  218 (966)
                      |.+++..|+.|+++++|++|+|++|.+.+.+|..  |.++++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            9999999999999999999999999999877765  9999999999999999988755 579999999999999999999


Q ss_pred             CCCcCccCC--CCCCEEEeecccccccCCcCCCCCCc------cceEeccccccCCCCChhhhcC---CCCCEEEccCC-
Q 002105          219 EIPKEIGDL--TSLNHLDLVYNNLTGQIPPSFGNLSN------LRYLFLYQNKLTGSIPKSILGL---KSLVSFDLSDN-  286 (966)
Q Consensus       219 ~~p~~l~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~Ls~N-  286 (966)
                      ..|..+..+  ++|+.|+++.|.+.+..|..++.+++      |++|++++|.+++..+..+...   ..++.|.++.+ 
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~  242 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI  242 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred             eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence            999999888  89999999999999988888877766      9999999999998888877654   57888888733 


Q ss_pred             --------cCcccCchhhcCC--CCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEcc
Q 002105          287 --------YLSGEIPEEVIQL--QNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLS  356 (966)
Q Consensus       287 --------~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls  356 (966)
                              .+.+..+..+..+  ++|+.|++++|.+.+..|..+..+++|+.|+|++|++++..|..|..+++|+.|+|+
T Consensus       243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls  322 (844)
T 3j0a_A          243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS  322 (844)
T ss_dssp             CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred             ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence                    3333344455554  689999999999999889999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCcc
Q 002105          357 TNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRI  436 (966)
Q Consensus       357 ~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~  436 (966)
                      +|.+++..|..+..+++|+.|++++|++.+..+..|..+++|++|+|++|.+++..     .+++|+.|++++|+++.. 
T Consensus       323 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l-  396 (844)
T 3j0a_A          323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTL-  396 (844)
T ss_dssp             SCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCC-
T ss_pred             CCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcccc-
Confidence            99999999999999999999999999999988889999999999999999998643     388999999999999854 


Q ss_pred             CcchhccCCCcEecCCCCcCCccCCC--CcCcccccccccccccccccCCC-cccCcCCCCEEEccCCccC-----CCCh
Q 002105          437 GEQKWEMTSLQMLNLAGNNFSGKLPD--SFGSDQLENLDLSENRFSGTIPR-SFGRLSELMQLKISRNKLF-----GDIP  508 (966)
Q Consensus       437 ~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~-----~~~p  508 (966)
                      |..   ..+++.|++++|++++....  ...+++|+.|+|++|++++..+. .+..+++|+.|+|++|.+.     +..|
T Consensus       397 ~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~  473 (844)
T 3j0a_A          397 PKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW  473 (844)
T ss_dssp             CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS
T ss_pred             ccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccch
Confidence            432   56899999999999975332  33778999999999999976554 4667899999999999997     4556


Q ss_pred             hhccccccccccccCCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCcccccCCCCCccCCC
Q 002105          509 EELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAI  588 (966)
Q Consensus       509 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~  588 (966)
                      ..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..|..+.  ++|+.||+++|++++.+|..  +..+
T Consensus       474 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L  549 (844)
T 3j0a_A          474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSL  549 (844)
T ss_dssp             SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSC
T ss_pred             hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCc
Confidence            7789999999999999999999999999999999999999999998887776  89999999999999998854  4456


Q ss_pred             ccccccCC
Q 002105          589 NATAVAGN  596 (966)
Q Consensus       589 ~~~~~~gn  596 (966)
                      ....+.+|
T Consensus       550 ~~l~l~~N  557 (844)
T 3j0a_A          550 SVLDITHN  557 (844)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEecCC
Confidence            66666676

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-49  Score=475.64  Aligned_cols=486  Identities=22%  Similarity=0.217  Sum_probs=423.9

Q ss_pred             CCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCC--CCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEcc
Q 002105           87 VESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPV--PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLG  164 (966)
Q Consensus        87 L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  164 (966)
                      .+.++-++.+++ .||..+.   +++++|+|++|.+++..  .+..+++|++|||++|++++..|..|.++++|++|+|+
T Consensus         9 ~~~~~c~~~~l~-~ip~~l~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~   84 (570)
T 2z63_A            9 NITYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT   84 (570)
T ss_dssp             TTEEECCSSCCS-SCCSSSC---SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CcEEEeCCCCcc-ccCCCcc---ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc
Confidence            466888888887 7887542   68999999999998743  46899999999999999999888999999999999999


Q ss_pred             CCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCC-CCCcCccCCCCCCEEEeeccccccc
Q 002105          165 GNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSG-EIPKEIGDLTSLNHLDLVYNNLTGQ  243 (966)
Q Consensus       165 ~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~  243 (966)
                      +|.+.+..|..|+++++|++|++++|++++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|++++.
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A           85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred             CCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence            999998888999999999999999999998776679999999999999999987 5799999999999999999999988


Q ss_pred             CCcCCCCCCcc----ceEeccccccCCCCChhhhcCCCCCEEEccCCcCcc-cCchhhcCCCC-----------------
Q 002105          244 IPPSFGNLSNL----RYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSG-EIPEEVIQLQN-----------------  301 (966)
Q Consensus       244 ~p~~~~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~-----------------  301 (966)
                      .|..++.+++|    ++|++++|.+++..|..+..+ +|+.|++++|.... .++..+..+++                 
T Consensus       165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l  243 (570)
T 2z63_A          165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL  243 (570)
T ss_dssp             CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSC
T ss_pred             cHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhh
Confidence            88889989888    899999999998888877765 79999999885332 12222222222                 


Q ss_pred             ---------------CceecccCC-CCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCC
Q 002105          302 ---------------LEILHLFSN-NFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIP  365 (966)
Q Consensus       302 ---------------L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p  365 (966)
                                     ++.++++++ .+.+..|..+..+++|+.|++++|.+. .+|..+..+ +|+.|++++|.+. .+|
T Consensus       244 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~  320 (570)
T 2z63_A          244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFP  320 (570)
T ss_dssp             EECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCC
T ss_pred             hhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccC
Confidence                           344555555 667778888999999999999999998 578888888 9999999999998 556


Q ss_pred             CCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcC--ChhhcCCCcccEEcccCCCCCCccCcchhcc
Q 002105          366 ETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGEL--SSEFTRLPLVYFLDISGNDLSGRIGEQKWEM  443 (966)
Q Consensus       366 ~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l  443 (966)
                      .  ..+++|+.|++++|.+.+..+.  ..+++|++|++++|++++..  +..+..+++|++|++++|.+.+..+. +..+
T Consensus       321 ~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l  395 (570)
T 2z63_A          321 T--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGL  395 (570)
T ss_dssp             B--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETC
T ss_pred             c--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-cccc
Confidence            5  4678899999999999887765  78899999999999998765  77889999999999999999876655 8889


Q ss_pred             CCCcEecCCCCcCCccCCC--CcCcccccccccccccccccCCCcccCcCCCCEEEccCCccC-CCChhhcccccccccc
Q 002105          444 TSLQMLNLAGNNFSGKLPD--SFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLF-GDIPEELSSCKKLVSL  520 (966)
Q Consensus       444 ~~L~~L~Ls~N~l~~~~p~--~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L  520 (966)
                      ++|+.|++++|.+++..|.  +..+++|++|++++|.+++..|..|..+++|+.|++++|++. +.+|..+..+++|+.|
T Consensus       396 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  475 (570)
T 2z63_A          396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  475 (570)
T ss_dssp             TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence            9999999999999987763  457789999999999999999999999999999999999998 6789999999999999


Q ss_pred             ccCCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCcccccCCCCCcc
Q 002105          521 DLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAF  585 (966)
Q Consensus       521 ~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~ip~~~~~  585 (966)
                      +|++|++++..|..+..+++|+.|++++|++++..|..+..+++|+.+++++|+++|.+|....+
T Consensus       476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             ECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence            99999999999999999999999999999999998888999999999999999999999876543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1e-49  Score=476.86  Aligned_cols=490  Identities=21%  Similarity=0.236  Sum_probs=355.9

Q ss_pred             CCcccceeeCCCCCEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCC-
Q 002105           49 FCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP-  127 (966)
Q Consensus        49 ~c~w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~-  127 (966)
                      .|.|.|+ |+         .++++++ .+|+.+.  ++|++|||++|++++ +++..|..+++|++|+|++|++++..| 
T Consensus         3 ~C~~~~~-c~---------~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~   68 (549)
T 2z81_A            3 SCDASGV-CD---------GRSRSFT-SIPSGLT--AAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRINTIEGD   68 (549)
T ss_dssp             EECTTSE-EE---------CTTSCCS-SCCSCCC--TTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred             cCCCCce-EE---------CCCCccc-cccccCC--CCccEEECcCCccCc-cChhhhhcCCcccEEECCCCCcCccChh
Confidence            5999998 84         3456666 4555553  789999999999984 544556777999999999999887543 


Q ss_pred             -CCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcc-cCCcCCCCCCCCCEEEccCCCCcccCC-cccccCC
Q 002105          128 -IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVG-EIPLSISNITSLQIFTLASNQLIGSIP-REIGQLR  204 (966)
Q Consensus       128 -~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~  204 (966)
                       ++.+++|++|||++|++++..|..|+.+++|++|+|++|.+.+ ..|..++++++|++|++++|.+.+.+| ..+.+++
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence             6888899999999999988777778899999999999998876 456788889999999999888544454 5788888


Q ss_pred             cceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcC-CCCCCccceEeccccccCCCC--C-hhhhcCCCCCE
Q 002105          205 NLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPS-FGNLSNLRYLFLYQNKLTGSI--P-KSILGLKSLVS  280 (966)
Q Consensus       205 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~--p-~~l~~l~~L~~  280 (966)
                      +|++|++++|.+++..|..++.+++|++|+++.|.+.. +|.. +..+++|++|++++|++++..  | .....+++|+.
T Consensus       149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~  227 (549)
T 2z81_A          149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK  227 (549)
T ss_dssp             EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred             ccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence            99999999998888888888888889999998888763 3333 356888889999888887642  1 22345678888


Q ss_pred             EEccCCcCcccCchhh----cCCCCCceecccCCCCCCCC------CCCCCCCCCccEEEccCCcCcccCCccccCCCCC
Q 002105          281 FDLSDNYLSGEIPEEV----IQLQNLEILHLFSNNFTGKI------PSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNL  350 (966)
Q Consensus       281 L~Ls~N~l~~~~p~~~----~~l~~L~~L~L~~N~l~~~~------p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L  350 (966)
                      |++++|.+++..+..+    ..+++|+.+++++|.+.+..      ...+..+++|+.|++.++.+....  .+.     
T Consensus       228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~-----  300 (549)
T 2z81_A          228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY--LFY-----  300 (549)
T ss_dssp             EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG--GSC-----
T ss_pred             eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh--hcc-----
Confidence            8888888876554433    45677888888887766531      122344556666666655443210  000     


Q ss_pred             cEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCcc-ccCccCceeeccccccCCcCCh---hhcCCCcccEEc
Q 002105          351 TVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSL-STCKSLRRVRLQNNRLSGELSS---EFTRLPLVYFLD  426 (966)
Q Consensus       351 ~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~Ld  426 (966)
                                  .++..+...++|+.|++++|.++ .+|..+ ..+++|++|++++|++.+.+|.   .+..+++|++|+
T Consensus       301 ------------~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~  367 (549)
T 2z81_A          301 ------------DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV  367 (549)
T ss_dssp             ------------CCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEE
T ss_pred             ------------cchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEE
Confidence                        01111122345566666666654 344444 4577777777777777765543   356677777777


Q ss_pred             ccCCCCCCccC--cchhccCCCcEecCCCCcCCccCCCCcCcccccccccccccccccCCCcccCcCCCCEEEccCCccC
Q 002105          427 ISGNDLSGRIG--EQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLF  504 (966)
Q Consensus       427 Ls~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  504 (966)
                      +++|++++..+  ..+..+++|++|++++|++++..+.+..+++|++|++++|++++ +|..+  .++|+.|+|++|+++
T Consensus       368 Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~  444 (549)
T 2z81_A          368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLD  444 (549)
T ss_dssp             CTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCS
T ss_pred             ccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChh
Confidence            77777776532  44667777888888888777433334556778888888888763 34333  258899999999988


Q ss_pred             CCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCcccccCCCC
Q 002105          505 GDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST  582 (966)
Q Consensus       505 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~ip~~  582 (966)
                      +.+    ..+++|++|+|++|+|+ .+|. ...+++|+.|||++|++++.+|..+..+++|+.|++++|++.|.+|..
T Consensus       445 ~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  516 (549)
T 2z81_A          445 SFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  516 (549)
T ss_dssp             CCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred             hhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence            753    57889999999999998 6776 467899999999999999999988999999999999999999988743

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.7e-49  Score=473.45  Aligned_cols=486  Identities=22%  Similarity=0.244  Sum_probs=403.3

Q ss_pred             CEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCC--CCCCCCCCcEEeC
Q 002105           62 HVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPV--PIGSLSRLEILDL  139 (966)
Q Consensus        62 ~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~L  139 (966)
                      +++.|||++|.+++..+.+|..+++|++|||++|+++ .+++..|..+++|++|+|++|++++..  .++.+++|++|++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            6788888888888877778888888888888888887 566667777788888888888887643  3678888888888


Q ss_pred             CCCCCCCcCCCCcCCCCCcCEEEccCCCCcc-cCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcc----eEEEccCC
Q 002105          140 SNNMLSGKIPEEIGSFSGLKVLDLGGNVLVG-EIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNL----KWIYLGYN  214 (966)
Q Consensus       140 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~L~~N  214 (966)
                      ++|++++..+..++.+++|++|+|++|.+.+ .+|..|+++++|++|++++|++++..|..++.+++|    +.|++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            8888887666678888888888888888876 468888888888888888888888777788888887    78888888


Q ss_pred             CCCCCCCcCccCCCCCCEEEeecccccc-cCCcCCCCCCccceEeccccccC------CCCChhhhcCCC--CCEEEccC
Q 002105          215 NLSGEIPKEIGDLTSLNHLDLVYNNLTG-QIPPSFGNLSNLRYLFLYQNKLT------GSIPKSILGLKS--LVSFDLSD  285 (966)
Q Consensus       215 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~------~~~p~~l~~l~~--L~~L~Ls~  285 (966)
                      .+++..|..+..+ +|+.|++++|.... .++..+..+++++.+.+....+.      ......+..+.+  ++.+++++
T Consensus       188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  266 (570)
T 2z63_A          188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  266 (570)
T ss_dssp             CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred             CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence            8887777777665 78888888874432 23445566666666655443322      112223333333  56777777


Q ss_pred             C-cCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccC
Q 002105          286 N-YLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKI  364 (966)
Q Consensus       286 N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~  364 (966)
                      + .+.+..|..+..+++|+.|++++|.++ .+|..+..+ +|+.|++++|.+. .+|.  ..+++|+.|++++|.+.+..
T Consensus       267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~  341 (570)
T 2z63_A          267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF  341 (570)
T ss_dssp             TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC
T ss_pred             chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc
Confidence            7 777888889999999999999999998 578888888 9999999999998 5665  57889999999999998777


Q ss_pred             CCCccCCCCccEEEccCCCCCCCC--CCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccC-cchh
Q 002105          365 PETLCDSGSLFKLILFSNSLEGKI--PNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIG-EQKW  441 (966)
Q Consensus       365 p~~~~~~~~L~~L~l~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~-~~~~  441 (966)
                      +.  ..+++|+.|++++|++++..  |..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+.
T Consensus       342 ~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~  418 (570)
T 2z63_A          342 SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL  418 (570)
T ss_dssp             CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred             cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhh
Confidence            66  67889999999999998654  67788999999999999999987666 9999999999999999998766 5678


Q ss_pred             ccCCCcEecCCCCcCCccCCCC-cCccccccccccccccc-ccCCCcccCcCCCCEEEccCCccCCCChhhccccccccc
Q 002105          442 EMTSLQMLNLAGNNFSGKLPDS-FGSDQLENLDLSENRFS-GTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVS  519 (966)
Q Consensus       442 ~l~~L~~L~Ls~N~l~~~~p~~-~~~~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  519 (966)
                      .+++|++|++++|.+.+..|.. .++++|++|++++|.++ +.+|..+..+++|+.|+|++|++++..|..+..+++|+.
T Consensus       419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  498 (570)
T 2z63_A          419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  498 (570)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence            8999999999999999988874 46899999999999998 689999999999999999999999999999999999999


Q ss_pred             cccCCceeccccCccCCCCCCCcEEeCCCCcCcccCCc
Q 002105          520 LDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQ  557 (966)
Q Consensus       520 L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~  557 (966)
                      |+|++|++++..|..+..+++|+.|++++|++++..|.
T Consensus       499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            99999999999888999999999999999999998774

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.4e-50  Score=488.62  Aligned_cols=448  Identities=22%  Similarity=0.324  Sum_probs=308.6

Q ss_pred             CCcEEECCCCCCCCCCC--CCCCCCCcEEeCCCCCC------CC------cCCCCcCCCCCcCEEEccCCCCcccCCcCC
Q 002105          111 SLRFLNLSNNNFTGPVP--IGSLSRLEILDLSNNML------SG------KIPEEIGSFSGLKVLDLGGNVLVGEIPLSI  176 (966)
Q Consensus       111 ~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l------~~------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  176 (966)
                      +++.|+|++|.++|.+|  ++.|++|++|||++|.+      .+      .+|...  +..|+ +++++|.+.+.+|..+
T Consensus        82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~  158 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDF  158 (636)
T ss_dssp             CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGS
T ss_pred             CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhH
Confidence            56667777776666444  46666666666666654      11      222222  34455 5556665555555544


Q ss_pred             CCC-CCCCEEEccCCCCcccCCcccccCCcceEEEcc--CCCCCCCCCcCccCCCCCCEEEeeccccccc----------
Q 002105          177 SNI-TSLQIFTLASNQLIGSIPREIGQLRNLKWIYLG--YNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQ----------  243 (966)
Q Consensus       177 ~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~--~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~----------  243 (966)
                      ..+ ..+..+++....+..      .....++.+.+.  .|.+++ +|..++++++|++|+|++|.+++.          
T Consensus       159 ~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  231 (636)
T 4eco_A          159 SDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN  231 (636)
T ss_dssp             CHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred             HHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccc
Confidence            411 111111111111000      001112222222  456666 666677777777777777776664          


Q ss_pred             -------CCcCCC--CCCccceEeccccccCCCCChhhhcCCCCCEEEccCCc-Ccc-cCchhhcCC------CCCceec
Q 002105          244 -------IPPSFG--NLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNY-LSG-EIPEEVIQL------QNLEILH  306 (966)
Q Consensus       244 -------~p~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l------~~L~~L~  306 (966)
                             +|..++  ++++|++|+|++|++.+.+|..++++++|++|++++|. ++| .+|..+..+      ++|+.|+
T Consensus       232 ~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~  311 (636)
T 4eco_A          232 SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY  311 (636)
T ss_dssp             SHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred             cchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE
Confidence                   677766  77777777777777777777777777777777777776 666 666666655      6777777


Q ss_pred             ccCCCCCCCCCC--CCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCC-ccEEEccCCC
Q 002105          307 LFSNNFTGKIPS--SLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGS-LFKLILFSNS  383 (966)
Q Consensus       307 L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~-L~~L~l~~N~  383 (966)
                      +++|+++ .+|.  .++++++|+.|++++|+++|.+| .++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|+
T Consensus       312 L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~  388 (636)
T 4eco_A          312 IGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK  388 (636)
T ss_dssp             CCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC
T ss_pred             CCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc
Confidence            7777777 5666  67777777777777777777777 6777777777777777777 66666777777 7777777777


Q ss_pred             CCCCCCCccccCc--cCceeeccccccCCcCChhhc-------CCCcccEEcccCCCCCCccCcchhccCCCcEecCCCC
Q 002105          384 LEGKIPNSLSTCK--SLRRVRLQNNRLSGELSSEFT-------RLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGN  454 (966)
Q Consensus       384 l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N  454 (966)
                      ++ .+|..+..++  +|++|++++|++++.+|..|.       .+++|++|++++|+++...+..+..+++|++|+|++|
T Consensus       389 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N  467 (636)
T 4eco_A          389 LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN  467 (636)
T ss_dssp             CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred             Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence            77 5666666544  777777777777777777776       6777888888888887544444455788888888888


Q ss_pred             cCCccCCC-CcCc--------ccccccccccccccccCCCccc--CcCCCCEEEccCCccCCCChhhcccccccccccc-
Q 002105          455 NFSGKLPD-SFGS--------DQLENLDLSENRFSGTIPRSFG--RLSELMQLKISRNKLFGDIPEELSSCKKLVSLDL-  522 (966)
Q Consensus       455 ~l~~~~p~-~~~~--------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-  522 (966)
                      +++ .+|. .+..        ++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+| 
T Consensus       468 ~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls  544 (636)
T 4eco_A          468 MLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR  544 (636)
T ss_dssp             CCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred             CCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence            887 4444 4432        27888899998888 6777776  88899999999999987 8888888999999988 


Q ss_pred             -----CCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCccccc
Q 002105          523 -----SNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGS  578 (966)
Q Consensus       523 -----s~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~  578 (966)
                           ++|++.+.+|..++.+++|+.|+|++|++ +.+|..+.  ++|+.|++++|++...
T Consensus       545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence                 56889999999999999999999999999 78898876  7999999999988743

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.3e-49  Score=470.72  Aligned_cols=474  Identities=20%  Similarity=0.208  Sum_probs=310.8

Q ss_pred             CEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCC
Q 002105           88 ESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNV  167 (966)
Q Consensus        88 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  167 (966)
                      .+.|.++|.++ .||..++   ++|++|+|++|+++                      +..|..|.++++|++|+|++|.
T Consensus         8 ~~c~~~~~~l~-~ip~~~~---~~L~~L~Ls~n~l~----------------------~~~~~~~~~l~~L~~L~Ls~n~   61 (549)
T 2z81_A            8 GVCDGRSRSFT-SIPSGLT---AAMKSLDLSFNKIT----------------------YIGHGDLRACANLQVLILKSSR   61 (549)
T ss_dssp             SEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC----------------------EECSSTTSSCTTCCEEECTTSC
T ss_pred             ceEECCCCccc-cccccCC---CCccEEECcCCccC----------------------ccChhhhhcCCcccEEECCCCC
Confidence            34566677776 5665443   44555555555554                      4444444445555555555555


Q ss_pred             CcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCC-CCCcCccCCCCCCEEEeecccccccCC-
Q 002105          168 LVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSG-EIPKEIGDLTSLNHLDLVYNNLTGQIP-  245 (966)
Q Consensus       168 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p-  245 (966)
                      +.+..|..|+++++|++|++++|++++..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| 
T Consensus        62 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~  141 (549)
T 2z81_A           62 INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR  141 (549)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred             cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH
Confidence            444444445555555555555555544444445555555555555555543 234445555555555555555322222 


Q ss_pred             cCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchh-hcCCCCCceecccCCCCCCCC--C-CCCC
Q 002105          246 PSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEE-VIQLQNLEILHLFSNNFTGKI--P-SSLA  321 (966)
Q Consensus       246 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~--p-~~l~  321 (966)
                      ..|.++++|++|++++|++++..|..+..+++|++|+++.|.+.. +|.. +..+++|+.|++++|++++..  | ....
T Consensus       142 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  220 (549)
T 2z81_A          142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDE  220 (549)
T ss_dssp             TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCC
T ss_pred             hhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhh
Confidence            345555555555555555555555555555555555555555442 2222 234556666666666655431  1 1223


Q ss_pred             CCCCccEEEccCCcCcccCC----ccccCCCCCcEEEccCCcccccC------CCCccCCCCccEEEccCCCCCCC----
Q 002105          322 SMPKLQVLQLWSNQFSGEIP----SNLGKQNNLTVIDLSTNFLTGKI------PETLCDSGSLFKLILFSNSLEGK----  387 (966)
Q Consensus       322 ~l~~L~~L~L~~N~l~~~~p----~~~~~~~~L~~L~Ls~N~l~~~~------p~~~~~~~~L~~L~l~~N~l~~~----  387 (966)
                      .+++|+.|++++|.+++..+    ..+..+.+|+.+++++|.+.+..      ...+..+++++.|.+.++.+...    
T Consensus       221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~  300 (549)
T 2z81_A          221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY  300 (549)
T ss_dssp             CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSC
T ss_pred             hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcc
Confidence            46677777777777765433    23455677778888877776531      12345667788888888766432    


Q ss_pred             -CCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCc---chhccCCCcEecCCCCcCCccCC--
Q 002105          388 -IPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGE---QKWEMTSLQMLNLAGNNFSGKLP--  461 (966)
Q Consensus       388 -~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p--  461 (966)
                       ++..+..+.+|+.|++++|++.......+..+++|++|++++|++++.+|.   .+..+++|++|+|++|++++..+  
T Consensus       301 ~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  380 (549)
T 2z81_A          301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG  380 (549)
T ss_dssp             CCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHH
T ss_pred             cchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccch
Confidence             222234467899999999999844434446899999999999999987643   36788999999999999987543  


Q ss_pred             C-CcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCC
Q 002105          462 D-SFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPV  540 (966)
Q Consensus       462 ~-~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  540 (966)
                      . +..+++|++|++++|+++ .+|..+..+++|+.|++++|++++ +|..+  .++|++|+|++|++++.+    ..+++
T Consensus       381 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~  452 (549)
T 2z81_A          381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPR  452 (549)
T ss_dssp             HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTT
T ss_pred             hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCCh
Confidence            2 456789999999999999 688899999999999999999974 44443  268999999999999753    57899


Q ss_pred             CcEEeCCCCcCcccCCcccccCCCCCeeeCcCCcccccCCCC-CccCCCccccccCCCC
Q 002105          541 LGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPST-GAFLAINATAVAGNDL  598 (966)
Q Consensus       541 L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~l  598 (966)
                      |+.|+|++|+++ .+|. ...+++|+.|++++|++++.+|.. ..+..+....+.+|.+
T Consensus       453 L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          453 LQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             CCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred             hcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence            999999999999 6776 578999999999999999987753 4556667777888854

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=9.9e-49  Score=431.33  Aligned_cols=241  Identities=19%  Similarity=0.323  Sum_probs=192.2

Q ss_pred             ccCCCCCccEEEEEEEe-----cCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          689 TSRGKKGVSSSYKVRSL-----ANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~-----~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ..+|+|+||.||+|+..     .++..||||++........++|.+|++.+.+ ++|||||+++|+|.+++..|||||||
T Consensus        47 ~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~-l~HpnIV~l~g~~~~~~~~~lV~Ey~  125 (329)
T 4aoj_A           47 WELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTM-LQHQHIVRFFGVCTEGRPLLMVFEYM  125 (329)
T ss_dssp             EEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTT-CCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             EEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHh-CCCCCCCcEEEEEEECCEEEEEEEcC
Confidence            35799999999999863     3578999999976655556779999998888 69999999999999999999999999


Q ss_pred             CCCCHHHHHHc------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEe
Q 002105          764 EGKELSEVLRN------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS  825 (966)
Q Consensus       764 ~~g~L~~~l~~------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~  825 (966)
                      ++|+|.++++.                  ++|.++.+|+.|||+||+|||   +.+||||||||+|||+|++  ..+|++
T Consensus       126 ~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~--~~~Ki~  200 (329)
T 4aoj_A          126 RHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQG--LVVKIG  200 (329)
T ss_dssp             TTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETT--TEEEEC
T ss_pred             CCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHhhEEECCC--CcEEEc
Confidence            99999999852                  789999999999999999999   4589999999999999965  467999


Q ss_pred             ccccceec--------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhc
Q 002105          826 VPGLAYCT--------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYS  896 (966)
Q Consensus       826 ~~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~  896 (966)
                      |||++...        .....||+.|||||++.+..|+.|+|||||||++|||+| |+.||....  ...+.+.+..   
T Consensus       201 DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~--~~~~~~~i~~---  275 (329)
T 4aoj_A          201 DFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS--NTEAIDCITQ---  275 (329)
T ss_dssp             CCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC--HHHHHHHHHH---
T ss_pred             ccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCC--HHHHHHHHHc---
Confidence            99998642        123568999999999999999999999999999999999 899997532  1222222221   


Q ss_pred             cCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          897 DCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       897 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      +..      +..+..++      .++.+++.+||+.||++||||+||+++|+.+.+
T Consensus       276 g~~------~~~p~~~~------~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~  319 (329)
T 4aoj_A          276 GRE------LERPRACP------PEVYAIMRGCWQREPQQRHSIKDVHARLQALAQ  319 (329)
T ss_dssp             TCC------CCCCTTCC------HHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             CCC------CCCccccc------HHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhh
Confidence            111      11111222      356778899999999999999999999999444

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=5e-49  Score=427.71  Aligned_cols=242  Identities=19%  Similarity=0.346  Sum_probs=194.3

Q ss_pred             ccCCCCCccEEEEEEEe-----cCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          689 TSRGKKGVSSSYKVRSL-----ANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~-----~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ..+|+|+||.||+|+..     .++..||||++........++|.+|+..+.+ ++|||||+++|+|.+++..|||||||
T Consensus        19 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~-l~HpnIV~l~g~~~~~~~~~lV~Ey~   97 (299)
T 4asz_A           19 RELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTN-LQHEHIVKFYGVCVEGDPLIMVFEYM   97 (299)
T ss_dssp             EEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTT-CCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             eEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHh-CCCCCCccEEEEEeeCCEEEEEEEcC
Confidence            45799999999999864     3578899999976655556779999998888 69999999999999999999999999


Q ss_pred             CCCCHHHHHH----------------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecc
Q 002105          764 EGKELSEVLR----------------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP  827 (966)
Q Consensus       764 ~~g~L~~~l~----------------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~  827 (966)
                      ++|+|.++|+                .++|.++.+|+.|||+||+|||   +.+||||||||+|||+|++.  .+|++||
T Consensus        98 ~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~--~~Ki~DF  172 (299)
T 4asz_A           98 KHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENL--LVKIGDF  172 (299)
T ss_dssp             TTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGG--CEEECCC
T ss_pred             CCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccCHhhEEECCCC--cEEECCc
Confidence            9999999995                3899999999999999999999   45899999999999999764  5799999


Q ss_pred             ccceec--------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccC
Q 002105          828 GLAYCT--------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDC  898 (966)
Q Consensus       828 ~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  898 (966)
                      |++...        .....||+.|||||++.+..|+.|+|||||||++|||+| |+.||.+..  ...+...+.   .+.
T Consensus       173 Gla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~--~~~~~~~i~---~~~  247 (299)
T 4asz_A          173 GMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS--NNEVIECIT---QGR  247 (299)
T ss_dssp             SCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC--HHHHHHHHH---HTC
T ss_pred             ccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC--HHHHHHHHH---cCC
Confidence            998532        223468999999999999999999999999999999999 899997532  222222222   111


Q ss_pred             cccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          899 HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       899 ~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      ..      ..+..++      .++.+++.+||+.||++||||+||++.|+++.+.
T Consensus       248 ~~------~~p~~~~------~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~  290 (299)
T 4asz_A          248 VL------QRPRTCP------QEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA  290 (299)
T ss_dssp             CC------CCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CC------CCCccch------HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence            11      1111222      3567788999999999999999999999994443

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.7e-48  Score=425.42  Aligned_cols=240  Identities=22%  Similarity=0.335  Sum_probs=192.7

Q ss_pred             ccccCCCCCccEEEEEEEe-----cCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSL-----ANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~-----~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      ....+|+|+||.||+|+..     .+++.||||++..... ...++|.+|+..+.+ ++|||||+++|+|.+++..+|||
T Consensus        30 ~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~-l~HpNIV~l~g~~~~~~~~~lV~  108 (308)
T 4gt4_A           30 FMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRAR-LQHPNVVCLLGVVTKDQPLSMIF  108 (308)
T ss_dssp             EEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHH-CCCTTBCCEEEEECSSSSCEEEE
T ss_pred             EeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHh-CCCCCCCCcceEEEECCEEEEEE
Confidence            3456899999999999853     3568899999865432 234568899988888 69999999999999999999999


Q ss_pred             EccCCCCHHHHHH-------------------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCce
Q 002105          761 EYIEGKELSEVLR-------------------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPH  821 (966)
Q Consensus       761 Ey~~~g~L~~~l~-------------------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~  821 (966)
                      |||++|+|.++|+                   .++|.++.+|+.|||+||+|||   +.+||||||||+|||+|++.  .
T Consensus       109 Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~--~  183 (308)
T 4gt4_A          109 SYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYDKL--N  183 (308)
T ss_dssp             ECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGG--C
T ss_pred             EcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEECCCC--C
Confidence            9999999999994                   2899999999999999999999   45899999999999999765  4


Q ss_pred             EEEeccccceec--------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHH
Q 002105          822 LRLSVPGLAYCT--------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWAR  892 (966)
Q Consensus       822 ~~~~~~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~  892 (966)
                      +|++|||++...        .....||+.|||||++.++.|+.|+|||||||++|||+| |+.||.+..  ...+.+.+.
T Consensus       184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~--~~~~~~~i~  261 (308)
T 4gt4_A          184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS--NQDVVEMIR  261 (308)
T ss_dssp             EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC--HHHHHHHHH
T ss_pred             EEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCC--HHHHHHHHH
Confidence            789999998542        233578999999999999999999999999999999999 899997542  222223322


Q ss_pred             HhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          893 YCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       893 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                         .+...     | .+..++      .++.+++.+||+.||++||||+||+++|++
T Consensus       262 ---~~~~~-----~-~p~~~~------~~~~~li~~C~~~dP~~RPs~~ei~~~L~a  303 (308)
T 4gt4_A          262 ---NRQVL-----P-CPDDCP------AWVYALMIECWNEFPSRRPRFKDIHSRLRA  303 (308)
T ss_dssp             ---TTCCC-----C-CCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred             ---cCCCC-----C-Ccccch------HHHHHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence               11111     1 111222      356788899999999999999999999997

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.3e-47  Score=468.37  Aligned_cols=437  Identities=22%  Similarity=0.282  Sum_probs=345.1

Q ss_pred             CCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEc-cCCCCcccCCcCCCCCC-CCCE-----E---------E-ccCCCCcc
Q 002105          132 SRLEILDLSNNMLSGKIPEEIGSFSGLKVLDL-GGNVLVGEIPLSISNIT-SLQI-----F---------T-LASNQLIG  194 (966)
Q Consensus       132 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~~N~l~~~~p~~~~~l~-~L~~-----L---------~-L~~n~l~~  194 (966)
                      .+++.|+|++|.+.|.+|+++++|++|++|+| ++|.++|..|....... .+..     +         + .....+.+
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46888888888888888888888888888888 77777766442211110 0000     0         0 00000000


Q ss_pred             c-----------CCcccccCCcceEEEccC--CCCCCCCCcCccCCCCCCEEEeecccccc-----------------cC
Q 002105          195 S-----------IPREIGQLRNLKWIYLGY--NNLSGEIPKEIGDLTSLNHLDLVYNNLTG-----------------QI  244 (966)
Q Consensus       195 ~-----------~p~~l~~l~~L~~L~L~~--N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-----------------~~  244 (966)
                      .           .+........++.+.++.  |.+++ +|..|+++++|++|+|++|++++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence            0           010111122333344433  67776 77778888888888888888877                 48


Q ss_pred             CcCCC--CCCccceEeccccccCCCCChhhhcCCCCCEEEccCCc-Ccc-cCchhhcCCC-------CCceecccCCCCC
Q 002105          245 PPSFG--NLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNY-LSG-EIPEEVIQLQ-------NLEILHLFSNNFT  313 (966)
Q Consensus       245 p~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l~-------~L~~L~L~~N~l~  313 (966)
                      |..++  ++++|++|+|++|.+.+.+|..+.++++|+.|+|++|+ ++| .+|..+..++       +|+.|++++|.++
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            88877  89999999999999888999989999999999999998 888 7887776655       8999999999998


Q ss_pred             CCCCC--CCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCC-ccEEEccCCCCCCCCCC
Q 002105          314 GKIPS--SLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGS-LFKLILFSNSLEGKIPN  390 (966)
Q Consensus       314 ~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~-L~~L~l~~N~l~~~~p~  390 (966)
                       .+|.  .++++++|+.|+|++|+++ .+| .++.+++|+.|+|++|.++ .+|..+..+++ |+.|++++|+++ .+|.
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~  636 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN  636 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence             7888  8899999999999999998 778 8888999999999999998 78888888888 999999999988 7888


Q ss_pred             ccccCcc--CceeeccccccCCcCChhh---c--CCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCccCCCC
Q 002105          391 SLSTCKS--LRRVRLQNNRLSGELSSEF---T--RLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDS  463 (966)
Q Consensus       391 ~~~~l~~--L~~L~L~~N~l~~~~~~~~---~--~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  463 (966)
                      .+..++.  |+.|+|++|++.+.+|...   .  .+++|+.|+|++|+++...+..+..+++|+.|+|++|+++...+..
T Consensus       637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~  716 (876)
T 4ecn_A          637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS  716 (876)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTS
T ss_pred             hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHH
Confidence            8877654  9999999999998776432   2  3458999999999999544444457899999999999999433335


Q ss_pred             cCc--------ccccccccccccccccCCCccc--CcCCCCEEEccCCccCCCChhhccccccccccccCC------cee
Q 002105          464 FGS--------DQLENLDLSENRFSGTIPRSFG--RLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSN------NQL  527 (966)
Q Consensus       464 ~~~--------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l  527 (966)
                      +..        ++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|++      |++
T Consensus       717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l  794 (876)
T 4ecn_A          717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI  794 (876)
T ss_dssp             SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred             hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence            543        28999999999999 7888887  99999999999999998 899999999999999976      889


Q ss_pred             ccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCcccccC
Q 002105          528 SGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSL  579 (966)
Q Consensus       528 ~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~i  579 (966)
                      .+.+|..+..+++|+.|+|++|++ +.+|..+.  ++|+.||+++|++...-
T Consensus       795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID  843 (876)
T ss_dssp             CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred             cccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence            999999999999999999999999 78998876  69999999999987543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=8e-48  Score=457.20  Aligned_cols=451  Identities=22%  Similarity=0.255  Sum_probs=282.6

Q ss_pred             CEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCC--CCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccC
Q 002105           88 ESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGG  165 (966)
Q Consensus        88 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  165 (966)
                      ++||+++|+++ .||..++   ++|++|+|++|.+++..|  +..+++|++|+|++|++++..|+.|+++++|++|+|++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            57888888887 6776554   677777777777776443  46677777777777777766677777777777777777


Q ss_pred             CCCcccCCcCCCCCCCCCEEEccCCCCcc-cCCcccccCCcceEEEccCCCCCCCCCcCccCCCCC--CEEEeecccc--
Q 002105          166 NVLVGEIPLSISNITSLQIFTLASNQLIG-SIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSL--NHLDLVYNNL--  240 (966)
Q Consensus       166 N~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L--~~L~Ls~N~l--  240 (966)
                      |.++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|.+++   ..+..+++|  ++|++++|.+  
T Consensus        79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG  152 (520)
T ss_dssp             SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred             Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence            7776 45544  66777777777777665 356667777777777777776654   345555556  6677777666  


Q ss_pred             cccCCcCCCCCC-ccceEeccccccCCCCCh-hhhcCCCCCEEEccCCc-------CcccCchhhcCCCCCceecccCCC
Q 002105          241 TGQIPPSFGNLS-NLRYLFLYQNKLTGSIPK-SILGLKSLVSFDLSDNY-------LSGEIPEEVIQLQNLEILHLFSNN  311 (966)
Q Consensus       241 ~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~-------l~~~~p~~~~~l~~L~~L~L~~N~  311 (966)
                      .+..|..+..+. +...+++++|++.+.++. .+.++++|+.|++++|.       +.+.+| .+..+++|+.|++++|.
T Consensus       153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~  231 (520)
T 2z7x_B          153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE  231 (520)
T ss_dssp             SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred             cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence            556666665554 233445555555544433 34555566666666554       444333 44455555555555544


Q ss_pred             CCCCCCCCCCCCCCccEEEccCCcCcccCCcccc---CCCCCcEEEccCCcccccCCCCc-----cCCCCccEEEccCCC
Q 002105          312 FTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLG---KQNNLTVIDLSTNFLTGKIPETL-----CDSGSLFKLILFSNS  383 (966)
Q Consensus       312 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~---~~~~L~~L~Ls~N~l~~~~p~~~-----~~~~~L~~L~l~~N~  383 (966)
                      ++                        +..+..+.   ..++|+.|++++|.++|.+|..+     ..+++|+.+++++|.
T Consensus       232 l~------------------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~  287 (520)
T 2z7x_B          232 TT------------------------WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV  287 (520)
T ss_dssp             EE------------------------HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC
T ss_pred             cC------------------------HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc
Confidence            43                        22111110   12344455555555544444444     444555555555555


Q ss_pred             CCCCCC-CccccC---ccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCc-
Q 002105          384 LEGKIP-NSLSTC---KSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSG-  458 (966)
Q Consensus       384 l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-  458 (966)
                      +  .+| ..+..+   .+|+.|++++|.+.+...  +..+++|++|++++|++++.+|..+..+++|++|+|++|++++ 
T Consensus       288 ~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  363 (520)
T 2z7x_B          288 F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL  363 (520)
T ss_dssp             C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH
T ss_pred             e--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc
Confidence            5  233 222222   345566666655543221  1455566666666666666555556666666666666666664 


Q ss_pred             -cCCC-CcCcccccccccccccccccCCC-cccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccC
Q 002105          459 -KLPD-SFGSDQLENLDLSENRFSGTIPR-SFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASL  535 (966)
Q Consensus       459 -~~p~-~~~~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  535 (966)
                       .+|. +..+++|++|++++|.+++.+|. .+..+++|+.|++++|++++.+|..+.  ++|+.|+|++|+++ .+|..+
T Consensus       364 ~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~  440 (520)
T 2z7x_B          364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQV  440 (520)
T ss_dssp             HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGG
T ss_pred             ccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhh
Confidence             2333 33456677777777777664444 477778888888888888877777664  68888888888888 778877


Q ss_pred             CCCCCCcEEeCCCCcCcccCCcc-cccCCCCCeeeCcCCcccccCCC
Q 002105          536 SEMPVLGQLDLSENQLSGKIPQT-LGRVASLVQVNISHNHFHGSLPS  581 (966)
Q Consensus       536 ~~l~~L~~LdLs~N~l~g~~p~~-l~~l~~L~~l~ls~N~l~g~ip~  581 (966)
                      ..+++|+.|+|++|++++ +|.. +..+++|+.|++++|+++|.++.
T Consensus       441 ~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          441 VKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             GGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             hcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence            788889999999999884 5554 88888999999999999887653

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-47  Score=414.09  Aligned_cols=243  Identities=20%  Similarity=0.300  Sum_probs=186.9

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ...+|+||||.||+|+. .  ..||||++....  ....++|.+|+..+.+ ++|||||+++|+|.+ +..|||||||+|
T Consensus        41 ~~~iG~G~fG~Vy~~~~-~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~-l~HpNIV~l~g~~~~-~~~~iVmEy~~g  115 (307)
T 3omv_A           41 STRIGSGSFGTVYKGKW-H--GDVAVKILKVVDPTPEQFQAFRNEVAVLRK-TRHVNILLFMGYMTK-DNLAIVTQWCEG  115 (307)
T ss_dssp             EEECCCCSSSEEEEEES-S--SEEEEEECCCSSCCHHHHHHHHHHHHHHTT-CCCTTBCCEEEEECS-SSCEEEEECCSS
T ss_pred             eeEEeeCCCcEEEEEEE-C--CcEEEEEEEecCCCHHHHHHHHHHHHHHHh-CCCCCEeeEEEEEEC-CeEEEEEEcCCC
Confidence            44589999999999985 2  358999875332  2234568899988888 699999999999865 568999999999


Q ss_pred             CCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec--------
Q 002105          766 KELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT--------  833 (966)
Q Consensus       766 g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~--------  833 (966)
                      |+|.++|+    .++|.++.+|+.|||+||+|||   +.+||||||||+|||+|++  ..+|++|||++...        
T Consensus       116 GsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~--~~~Ki~DFGla~~~~~~~~~~~  190 (307)
T 3omv_A          116 SSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEG--LTVKIGDFGLATVKSRWSGSQQ  190 (307)
T ss_dssp             CBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETT--EEEEECCCSSCBC---------
T ss_pred             CCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCccCHHHEEECCC--CcEEEeeccCceecccCCccee
Confidence            99999995    3899999999999999999999   4589999999999999965  46799999998642        


Q ss_pred             CCCCcCCcccccccccCC---CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          834 DSKSINSSAYVAPETKES---KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       834 ~~~~~~~~~y~aPE~~~~---~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                      ....+||+.|||||++.+   +.|+.|+|||||||++|||+||+.||.+... ...+...+....        ..|.+..
T Consensus       191 ~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~-~~~~~~~~~~~~--------~~p~~~~  261 (307)
T 3omv_A          191 VEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINN-RDQIIFMVGRGY--------ASPDLSK  261 (307)
T ss_dssp             ---CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC-HHHHHHHHHTTC--------CCCCSTT
T ss_pred             ecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCCh-HHHHHHHHhcCC--------CCCCccc
Confidence            123579999999999853   4689999999999999999999999975322 222212221111        1121111


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      ...   ....++.+++.+||+.||++||||+||++.||. ++.
T Consensus       262 ~~~---~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~-l~~  300 (307)
T 3omv_A          262 LYK---NCPKAMKRLVADCVKKVKEERPLFPQILSSIEL-LQH  300 (307)
T ss_dssp             SCT---TSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHH-HHT
T ss_pred             ccc---cchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHH-Hhc
Confidence            111   112356678899999999999999999999987 554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-46  Score=447.00  Aligned_cols=452  Identities=21%  Similarity=0.227  Sum_probs=348.1

Q ss_pred             EEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCC--CCCCCCCcEEeCCC
Q 002105           64 NAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--IGSLSRLEILDLSN  141 (966)
Q Consensus        64 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~  141 (966)
                      +.+|+++|+++ .+|..+.  ++|++|||++|.+. .+++..|..+++|++|+|++|++++..|  ++.+++|++|||++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            46899999999 4677666  89999999999998 5776777888999999999999997544  78999999999999


Q ss_pred             CCCCCcCCCCcCCCCCcCEEEccCCCCcc-cCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcc--eEEEccCCCC--
Q 002105          142 NMLSGKIPEEIGSFSGLKVLDLGGNVLVG-EIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNL--KWIYLGYNNL--  216 (966)
Q Consensus       142 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~~N~l--  216 (966)
                      |+++ .+|..  .+++|++|+|++|.+++ .+|..|+++++|++|++++|.+++   ..+..+++|  ++|++++|.+  
T Consensus        79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG  152 (520)
T ss_dssp             SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred             Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence            9998 46666  89999999999999987 578999999999999999999986   457778888  9999999999  


Q ss_pred             CCCCCcCccCCC-CCCEEEeecccccccCCc-CCCCCCccceEeccccc-------cCCCCChhhhcCCCCCEEEccCCc
Q 002105          217 SGEIPKEIGDLT-SLNHLDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNK-------LTGSIPKSILGLKSLVSFDLSDNY  287 (966)
Q Consensus       217 ~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~n~-------l~~~~p~~l~~l~~L~~L~Ls~N~  287 (966)
                      .+..|..+..+. ....+++++|++.+.++. .+.++++|+.|++++|.       +.+.+| .+..+++|+.|++++|.
T Consensus       153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~  231 (520)
T 2z7x_B          153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE  231 (520)
T ss_dssp             SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred             cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence            888898888876 344677888988876654 67889999999999997       666555 78899999999999999


Q ss_pred             CcccCchhhc---CCCCCceecccCCCCCCCCCCCC-----CCCCCccEEEccCCcCcccCC-ccccCC---CCCcEEEc
Q 002105          288 LSGEIPEEVI---QLQNLEILHLFSNNFTGKIPSSL-----ASMPKLQVLQLWSNQFSGEIP-SNLGKQ---NNLTVIDL  355 (966)
Q Consensus       288 l~~~~p~~~~---~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~~p-~~~~~~---~~L~~L~L  355 (966)
                      +++..+..+.   ..++|+.|++++|.++|.+|..+     +.+++|+.+++++|.+  .+| ..+..+   .+|+.|++
T Consensus       232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l  309 (520)
T 2z7x_B          232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTV  309 (520)
T ss_dssp             EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEE
T ss_pred             cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEc
Confidence            8865443322   24689999999999999999888     8899999999999988  455 344433   57888888


Q ss_pred             cCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCC--cCChhhcCCCcccEEcccCCCCC
Q 002105          356 STNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSG--ELSSEFTRLPLVYFLDISGNDLS  433 (966)
Q Consensus       356 s~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~LdLs~N~l~  433 (966)
                      ++|.+.+..  .+..+++|++|++++|++++.+|..+..+++|++|++++|++++  .+|..+..+++|++||+++|+++
T Consensus       310 ~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~  387 (520)
T 2z7x_B          310 SGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS  387 (520)
T ss_dssp             ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred             CCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence            888876422  11345556666666666665555555555556665555555554  33344555555555555555554


Q ss_pred             CccCcchhccCCCcEecCCCCcCCccCCCCcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccc
Q 002105          434 GRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSS  513 (966)
Q Consensus       434 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  513 (966)
                      +.+|..                      .+..+++|++|++++|++++.+|..+.  ++|+.|+|++|+++ .+|..+..
T Consensus       388 ~~l~~~----------------------~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~  442 (520)
T 2z7x_B          388 YDEKKG----------------------DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK  442 (520)
T ss_dssp             CCGGGC----------------------SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG
T ss_pred             cccccc----------------------hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc
Confidence            422221                      022345666666666666666665554  68888999999888 77887779


Q ss_pred             cccccccccCCceeccccCcc-CCCCCCCcEEeCCCCcCcccCC
Q 002105          514 CKKLVSLDLSNNQLSGHIPAS-LSEMPVLGQLDLSENQLSGKIP  556 (966)
Q Consensus       514 l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~LdLs~N~l~g~~p  556 (966)
                      +++|+.|+|++|+++ .+|.. +..+++|+.|++++|++++..+
T Consensus       443 l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          443 LEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            999999999999998 45654 8889999999999999987654

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=3.7e-47  Score=415.93  Aligned_cols=249  Identities=20%  Similarity=0.294  Sum_probs=185.7

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchH--HHHHHHHhhcCCCceeEEeeEEecCC----eeEEEEEcc
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFW--PDVSQFGKLIMHPNIVRLHGVCRSEK----AAYLVYEYI  763 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~--~e~~~~~~~~~H~niv~l~g~~~~~~----~~~lv~Ey~  763 (966)
                      .+|+||||.||+|+.  +|+.||||++....   .+++.  .|+..+.+ ++|||||+++|+|.+++    .+|||||||
T Consensus        10 ~iG~G~fG~Vy~~~~--~g~~VAvK~l~~~~---~~~~~~e~Ei~~~~~-l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~   83 (303)
T 3hmm_A           10 SIGKGRFGEVWRGKW--RGEEVAVKIFSSRE---ERSWFREAEIYQTVM-LRHENILGFIAADNKDNGTWTQLWLVSDYH   83 (303)
T ss_dssp             EEEECSSSEEEEEEE--TTEEEEEEEECGGG---HHHHHHHHHHHTSTT-CCCTTBCCEEEEEEEECSSSEEEEEEEECC
T ss_pred             EEeeCCCeEEEEEEE--CCEEEEEEEECccc---hhhHHHHHHHHHHhc-CCCCCCCcEEEEEEecCCCceEEEEEecCC
Confidence            479999999999986  68999999985432   22333  34444445 69999999999998754    579999999


Q ss_pred             CCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhc-----CCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          764 EGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFH-----CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       764 ~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~-----~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      +||+|.++|+  .++|..+.+++.|+|+||+|||+.     +.++||||||||+|||+|.++  .+|++|||++....  
T Consensus        84 ~~gsL~~~l~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~--~~Ki~DFGla~~~~~~  161 (303)
T 3hmm_A           84 EHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNG--TCCIADLGLAVRHDSA  161 (303)
T ss_dssp             TTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTS--CEEECCCTTCEEEETT
T ss_pred             CCCcHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCC--CEEEEeCCCCccccCC
Confidence            9999999997  489999999999999999999965     256999999999999999765  47899999986421  


Q ss_pred             --------CCCcCCcccccccccCCC------CCCCcchHHHHHHHHHHHHcCCCCCCCCCC----------chhhHHHH
Q 002105          835 --------SKSINSSAYVAPETKESK------DITEKGDIYGFGLILIDLLTGKSPADADFG----------VHESIVEW  890 (966)
Q Consensus       835 --------~~~~~~~~y~aPE~~~~~------~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~----------~~~~~~~~  890 (966)
                              ...+||+.|||||++.+.      .|+.|+|||||||++|||+||++|+.....          ......++
T Consensus       162 ~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~  241 (303)
T 3hmm_A          162 TDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEM  241 (303)
T ss_dssp             TTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHH
T ss_pred             CCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHH
Confidence                    124699999999998754      477899999999999999999887643211          01111111


Q ss_pred             HHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          891 ARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       891 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      .......     -.+|.++.... ..+....+.+++.+||+.||++||||+||+++|+++.+
T Consensus       242 ~~~~~~~-----~~rp~~p~~~~-~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~  297 (303)
T 3hmm_A          242 RKVVCEQ-----KLRPNIPNRWQ-SCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ  297 (303)
T ss_dssp             HHHHTTS-----CCCCCCCGGGG-SSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHhcc-----cCCCCCCcccc-chHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHH
Confidence            1111111     12333322211 12445677889999999999999999999999998443

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=1.6e-46  Score=412.63  Aligned_cols=240  Identities=17%  Similarity=0.297  Sum_probs=195.3

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ++.+..+|+|+||.||+|++..+|+.||||++........+.+.+|+..+.+ ++|||||+++++|.+++.+|||||||+
T Consensus        76 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~-l~HpnIV~l~~~~~~~~~~~ivmEy~~  154 (346)
T 4fih_A           76 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRD-YQHENVVEMYNSYLVGDELWVVMEFLE  154 (346)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHH-CCCTTBCCEEEEEEETTEEEEEECCCT
T ss_pred             cEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHh-CCCCCCCcEEEEEEECCEEEEEEeCCC
Confidence            3456678999999999999999999999999976555556678889888877 799999999999999999999999999


Q ss_pred             CCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CCC
Q 002105          765 GKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DSK  836 (966)
Q Consensus       765 ~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~~  836 (966)
                      ||+|.++++  .+++.+...++.||+.||+|||   +.+||||||||+|||++.++  .+|++|||++...      ...
T Consensus       155 gg~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g--~vKl~DFGla~~~~~~~~~~~~  229 (346)
T 4fih_A          155 GGALTDIVTHTRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDG--RVKLSDFGFCAQVSKEVPRRKS  229 (346)
T ss_dssp             TEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTC--CEEECCCTTCEECCSSSCCBCC
T ss_pred             CCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEECCCC--CEEEecCcCceecCCCCCcccc
Confidence            999999996  4899999999999999999999   55899999999999999664  5899999998653      234


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchH
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ  916 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  916 (966)
                      .+||+.|||||++.+..|+.++||||+||++|||+||+.||.+... .+ +...+....         .|.+. ......
T Consensus       230 ~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-~~-~~~~i~~~~---------~~~~~-~~~~~s  297 (346)
T 4fih_A          230 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP-LK-AMKMIRDNL---------PPRLK-NLHKVS  297 (346)
T ss_dssp             CCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-HH-HHHHHHHSS---------CCCCS-CGGGSC
T ss_pred             cccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH-HH-HHHHHHcCC---------CCCCC-ccccCC
Confidence            5899999999999999999999999999999999999999975421 11 112221110         11110 001111


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          917 NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       917 ~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +   ++.+++.+|++.||++|||++|+++
T Consensus       298 ~---~~~dli~~~L~~dP~~R~ta~e~l~  323 (346)
T 4fih_A          298 P---SLKGFLDRLLVRDPAQRATAAELLK  323 (346)
T ss_dssp             H---HHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             H---HHHHHHHHHcCCChhHCcCHHHHhc
Confidence            2   4567788999999999999999875

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=2.4e-46  Score=410.13  Aligned_cols=242  Identities=18%  Similarity=0.227  Sum_probs=193.8

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|+|+||.||+|++..+|+.||||++...     ..+.+|+..+.+ ++|||||++++++.+++.+|||||||+||
T Consensus        62 ~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~-----~~~~~E~~il~~-l~HpnIV~l~~~~~~~~~~~ivmEy~~gg  135 (336)
T 4g3f_A           62 HQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLE-----VFRVEELVACAG-LSSPRIVPLYGAVREGPWVNIFMELLEGG  135 (336)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEETT-----TCCTHHHHTTTT-CCCTTBCCEEEEEEETTEEEEEECCCTTC
T ss_pred             eCcEeccCCCeEEEEEEECCCCCEEEEEEECHH-----HhHHHHHHHHHh-CCCCCCCcEEEEEEECCEEEEEEeccCCC
Confidence            344579999999999999999999999998542     223467766666 79999999999999999999999999999


Q ss_pred             CHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---------
Q 002105          767 ELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---------  834 (966)
Q Consensus       767 ~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---------  834 (966)
                      +|.++++   .+++.+...++.||+.||+|||   +.+||||||||+|||++.++ .++|++|||++....         
T Consensus       136 ~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g-~~vKl~DFGla~~~~~~~~~~~~~  211 (336)
T 4g3f_A          136 SLGQLIKQMGCLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDG-SRAALCDFGHALCLQPDGLGKSLL  211 (336)
T ss_dssp             BHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTS-CCEEECCCTTCEEC----------
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEeCCC-CEEEEeeCCCCeEccCCCccccee
Confidence            9999996   4899999999999999999999   56999999999999998654 258999999986421         


Q ss_pred             --CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 --SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 --~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                        ...+||+.|||||++.+..|+.++|||||||++|||+||+.||.+.... +........   ....     +.+...+
T Consensus       212 ~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~-~~~~~i~~~---~~~~-----~~~~~~~  282 (336)
T 4g3f_A          212 TGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRG-PLCLKIASE---PPPI-----REIPPSC  282 (336)
T ss_dssp             --CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCS-CCHHHHHHS---CCGG-----GGSCTTS
T ss_pred             cCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHH-HHHHHHHcC---CCCc-----hhcCccC
Confidence              2247999999999999999999999999999999999999999764322 222111110   0000     0111222


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      +   +   ++.+++.+||+.||++|||+.|+++.|+..+..
T Consensus       283 s---~---~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~  317 (336)
T 4g3f_A          283 A---P---LTAQAIQEGLRKEPVHRASAMELRRKVGKALQE  317 (336)
T ss_dssp             C---H---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             C---H---HHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhh
Confidence            2   2   456677899999999999999999999875543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2e-45  Score=447.60  Aligned_cols=509  Identities=22%  Similarity=0.212  Sum_probs=353.8

Q ss_pred             CEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCC--CCCCCCCcEEeC
Q 002105           62 HVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--IGSLSRLEILDL  139 (966)
Q Consensus        62 ~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L  139 (966)
                      .++.|||++|.|++..+.+|.++++|++|||++|+|+ .||+++|..+++|++|+|++|+|++..+  +..+++|++|+|
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            4677777777777666667777777777777777776 5666667777777777777777765322  567777777777


Q ss_pred             CCCCCCCcCCCCcCCCCCcCEEEccCCCCcc-cCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcce----EEEccCC
Q 002105          140 SNNMLSGKIPEEIGSFSGLKVLDLGGNVLVG-EIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLK----WIYLGYN  214 (966)
Q Consensus       140 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L~~N  214 (966)
                      ++|++++..+..|+++++|++|+|++|.+.+ .+|..++++++|++|++++|++++..|..+..+++++    .++++.|
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            7777776666667777777777777777754 3566677777777777777777776666666554433    5667777


Q ss_pred             CCCCCCCcCccCCCCCCEEEeeccccccc-CCcCCCCCCccceEeccccc------cCCCCChhhhcCCCCCEEEccCCc
Q 002105          215 NLSGEIPKEIGDLTSLNHLDLVYNNLTGQ-IPPSFGNLSNLRYLFLYQNK------LTGSIPKSILGLKSLVSFDLSDNY  287 (966)
Q Consensus       215 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~n~------l~~~~p~~l~~l~~L~~L~Ls~N~  287 (966)
                      .+....+..+ ....++.+++..|..... .+..+..+..++...+..+.      +.......+..+..+...++..+.
T Consensus       212 ~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~  290 (635)
T 4g8a_A          212 PMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  290 (635)
T ss_dssp             CCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred             cccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence            7664433333 333456677766654422 22334455555555543322      222233344455555555554333


Q ss_pred             Cc---ccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccC
Q 002105          288 LS---GEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKI  364 (966)
Q Consensus       288 l~---~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~  364 (966)
                      ..   ...+..+..+.+++.+.+.+|.+....  .+.....|+.|++.+|.+.+..+   ..+..|+.++++.|.+....
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~~  365 (635)
T 4g8a_A          291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAF  365 (635)
T ss_dssp             CCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCBC
T ss_pred             hcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCCc
Confidence            22   123344555667777777777665432  24455677888888887765433   24566777888887765433


Q ss_pred             CCCccCCCCccEEEccCCCCCC--CCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccC-cchh
Q 002105          365 PETLCDSGSLFKLILFSNSLEG--KIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIG-EQKW  441 (966)
Q Consensus       365 p~~~~~~~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~-~~~~  441 (966)
                        ....+++|+.+++++|.+..  ..+..+..+.+|+.+++..|.+... +..+..++.|+.++++.|......+ ..+.
T Consensus       366 --~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~  442 (635)
T 4g8a_A          366 --SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFL  442 (635)
T ss_dssp             --CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTT
T ss_pred             --ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhccccccccccccc
Confidence              33467788888888887753  3455566777888888888877653 4456778888888888877665544 4466


Q ss_pred             ccCCCcEecCCCCcCCccCCCC-cCcccccccccccccc-cccCCCcccCcCCCCEEEccCCccCCCChhhccccccccc
Q 002105          442 EMTSLQMLNLAGNNFSGKLPDS-FGSDQLENLDLSENRF-SGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVS  519 (966)
Q Consensus       442 ~l~~L~~L~Ls~N~l~~~~p~~-~~~~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  519 (966)
                      .+.+++.++++.|.+.+..|.. ...+.|+.|++++|.+ .+..|..|..+++|++|+|++|++++.+|..|.++++|++
T Consensus       443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~  522 (635)
T 4g8a_A          443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  522 (635)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence            7888888888888888877774 4567888889988874 4457788888999999999999998888888999999999


Q ss_pred             cccCCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccC-CCCCeeeCcCCcccccCC
Q 002105          520 LDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRV-ASLVQVNISHNHFHGSLP  580 (966)
Q Consensus       520 L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l-~~L~~l~ls~N~l~g~ip  580 (966)
                      |+|++|+|++..|..|+.+++|++|||++|+|++..|..+..+ ++|+.|++++|+|++.+.
T Consensus       523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            9999999988888888889999999999999998888888887 678999999999887654

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=1.3e-46  Score=405.53  Aligned_cols=237  Identities=21%  Similarity=0.309  Sum_probs=185.7

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEec----CCeeEEEEEcc
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS----EKAAYLVYEYI  763 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~----~~~~~lv~Ey~  763 (966)
                      .+|+||||.||+|++..++..||||++....  ....+.|.+|+..+.+ ++|||||+++|+|.+    ++.+|||||||
T Consensus        33 ~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~-l~HpnIV~~~~~~~~~~~~~~~~~lvmEy~  111 (290)
T 3fpq_A           33 EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKG-LQHPNIVRFYDSWESTVKGKKCIVLVTELM  111 (290)
T ss_dssp             EEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHT-CCCTTBCCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHh-CCCCCCCcEEEEEeeccCCCcEEEEEEeCC
Confidence            4799999999999998999999999996542  2234568888888888 699999999999865    35689999999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----CC
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----SK  836 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----~~  836 (966)
                      +||+|.++++   .+++.....++.||+.||+|||+. .++||||||||+|||+++. ...+|++|||++....    ..
T Consensus       112 ~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~-~~~IiHRDlKp~NILl~~~-~g~vKl~DFGla~~~~~~~~~~  189 (290)
T 3fpq_A          112 TSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGP-TGSVKIGDLGLATLKRASFAKA  189 (290)
T ss_dssp             CSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCCCCCGGGEEESST-TSCEEECCTTGGGGCCTTSBEE
T ss_pred             CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEecccChhheeEECC-CCCEEEEeCcCCEeCCCCccCC
Confidence            9999999996   489999999999999999999954 3459999999999999842 2458999999986432    23


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchH
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ  916 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  916 (966)
                      .+||+.|||||++.+ +|+.++|||||||++|||+||+.||..... ...+...+   ... ..    .+......+   
T Consensus       190 ~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~-~~~~~~~i---~~~-~~----~~~~~~~~~---  256 (290)
T 3fpq_A          190 VIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN-AAQIYRRV---TSG-VK----PASFDKVAI---  256 (290)
T ss_dssp             SCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS-HHHHHHHH---TTT-CC----CGGGGGCCC---
T ss_pred             cccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCc-HHHHHHHH---HcC-CC----CCCCCccCC---
Confidence            579999999998865 699999999999999999999999965322 11111111   111 11    111111111   


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          917 NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       917 ~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         .++.+++.+||+.||++|||++|+++
T Consensus       257 ---~~~~~li~~~L~~dP~~R~s~~e~l~  282 (290)
T 3fpq_A          257 ---PEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             ---HHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ---HHHHHHHHHHccCChhHCcCHHHHhc
Confidence               24667888999999999999999865

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=4.6e-46  Score=409.71  Aligned_cols=238  Identities=21%  Similarity=0.337  Sum_probs=186.9

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      +..+..+|+||||.||+|++..+|+.||||++....  ....+.|.+|+..+.+ ++|||||++++++.+++..||||||
T Consensus        26 Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~-l~HpnIV~~~~~~~~~~~~yiVmEy  104 (350)
T 4b9d_A           26 YVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLAN-MKHPNIVQYRESFEENGSLYIVMDY  104 (350)
T ss_dssp             EEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHH-CCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             eEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHH-CCCCCCCcEEEEEEECCEEEEEEeC
Confidence            456677899999999999999999999999986432  2233567888888877 6999999999999999999999999


Q ss_pred             cCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---
Q 002105          763 IEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       763 ~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---  834 (966)
                      |+||+|.++|+.     +++.+...++.||+.||+|||   +.+||||||||+|||++.++  .+|++|||++....   
T Consensus       105 ~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g--~vKl~DFGla~~~~~~~  179 (350)
T 4b9d_A          105 CEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDG--TVQLGDFGIARVLNSTV  179 (350)
T ss_dssp             CTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTC--CEEECSTTEESCCCHHH
T ss_pred             CCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCC--CEEEcccccceeecCCc
Confidence            999999999952     588889999999999999999   55999999999999999664  58999999986532   


Q ss_pred             ---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCC
Q 002105          835 ---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH  911 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  911 (966)
                         ...+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.. ..+.+ .   ......     . |.+...
T Consensus       180 ~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~-~~~~~-~---~i~~~~-----~-~~~~~~  248 (350)
T 4b9d_A          180 ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGS-MKNLV-L---KIISGS-----F-PPVSLH  248 (350)
T ss_dssp             HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS-HHHHH-H---HHHHTC-----C-CCCCTT
T ss_pred             ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC-HHHHH-H---HHHcCC-----C-CCCCcc
Confidence               23469999999999999999999999999999999999999997642 11211 1   111111     1 111122


Q ss_pred             CcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          912 VSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       912 ~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ++   +   ++.+++.+||+.||++|||++|+++
T Consensus       249 ~s---~---~~~~li~~~L~~dP~~R~s~~e~l~  276 (350)
T 4b9d_A          249 YS---Y---DLRSLVSQLFKRNPRDRPSVNSILE  276 (350)
T ss_dssp             SC---H---HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CC---H---HHHHHHHHHccCChhHCcCHHHHhc
Confidence            22   2   4567788999999999999999874

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=3.6e-46  Score=414.14  Aligned_cols=247  Identities=20%  Similarity=0.295  Sum_probs=194.7

Q ss_pred             cccccCCCCCccEEEEEEEecCC-----cEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecC-CeeEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLAND-----MQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE-KAAYL  758 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~-----~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~-~~~~l  758 (966)
                      .....+|+|+||.||+|+....+     +.||||++..... ...++|.+|+..+.++-+|||||+++|+|.++ +.+||
T Consensus        67 ~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~~~i  146 (353)
T 4ase_A           67 KLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMV  146 (353)
T ss_dssp             EEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEE
T ss_pred             EEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCCEEEE
Confidence            34456799999999999975433     5799999865432 23456889999998854569999999999764 57899


Q ss_pred             EEEccCCCCHHHHHHc-------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC
Q 002105          759 VYEYIEGKELSEVLRN-------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE  819 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~~-------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~  819 (966)
                      |||||++|+|.++|+.                   ++|.++..++.|||+||+|||   +.+||||||||+|||++++. 
T Consensus       147 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~-  222 (353)
T 4ase_A          147 IVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKN-  222 (353)
T ss_dssp             EEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGG-
T ss_pred             EEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---hCCeecCccCccceeeCCCC-
Confidence            9999999999999963                   789999999999999999999   55899999999999999764 


Q ss_pred             ceEEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHH
Q 002105          820 PHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEW  890 (966)
Q Consensus       820 ~~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~  890 (966)
                       .+|++|||++....        ....||+.|||||++.+..|+.|+|||||||++|||+| |+.||.+.... +.+...
T Consensus       223 -~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~-~~~~~~  300 (353)
T 4ase_A          223 -VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-EEFCRR  300 (353)
T ss_dssp             -CEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS-HHHHHH
T ss_pred             -CEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHH-HHHHHH
Confidence             57999999986421        23467899999999999999999999999999999998 99999754222 222222


Q ss_pred             HHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          891 ARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       891 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      +..   +..      +..+..++      .++.+++.+||+.||++||||+||++.|+++++.
T Consensus       301 i~~---g~~------~~~p~~~~------~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~  348 (353)
T 4ase_A          301 LKE---GTR------MRAPDYTT------PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  348 (353)
T ss_dssp             HHH---TCC------CCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHc---CCC------CCCCccCC------HHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHH
Confidence            221   111      11111222      2567788899999999999999999999986653

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=2.5e-45  Score=413.06  Aligned_cols=240  Identities=17%  Similarity=0.305  Sum_probs=195.6

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ++.+..+|+|+||.||+|++..+|+.||||++........+.+.+|+..+.+ ++|||||+++++|.+++.+|||||||+
T Consensus       153 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~-l~HpnIV~l~~~~~~~~~~~iVmEy~~  231 (423)
T 4fie_A          153 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRD-YQHENVVEMYNSYLVGDELWVVMEFLE  231 (423)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHH-CCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred             cEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHh-CCCCCCCceEEEEEECCEEEEEEeCCC
Confidence            4566778999999999999999999999999976555555668888888877 799999999999999999999999999


Q ss_pred             CCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CC
Q 002105          765 GKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SK  836 (966)
Q Consensus       765 ~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~  836 (966)
                      ||+|.++++  .+++.+...++.||+.||+|||   +.+||||||||+|||++.++  .+|++|||++....      ..
T Consensus       232 gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g--~vKl~DFGla~~~~~~~~~~~~  306 (423)
T 4fie_A          232 GGALTDIVTHTRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDG--RVKLSDFGFCAQVSKEVPRRKS  306 (423)
T ss_dssp             TEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTC--CEEECCCTTCEECCSSCCCBCC
T ss_pred             CCcHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCC--CEEEecCccceECCCCCccccc
Confidence            999999996  4899999999999999999999   45899999999999999654  58999999986522      34


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchH
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ  916 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  916 (966)
                      .+||+.|||||++.+..|+.++||||+||++|||++|+.||.+... .+ +...+..   .      ..+.+.. .....
T Consensus       307 ~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-~~-~~~~i~~---~------~~~~~~~-~~~~s  374 (423)
T 4fie_A          307 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP-LK-AMKMIRD---N------LPPRLKN-LHKVS  374 (423)
T ss_dssp             CEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-HH-HHHHHHH---S------CCCCCSC-TTSSC
T ss_pred             cccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH-HH-HHHHHHc---C------CCCCCcc-cccCC
Confidence            5799999999999999999999999999999999999999975421 11 1122211   1      0111110 01112


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          917 NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       917 ~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +   ++.+++.+|++.||++|||++|+++
T Consensus       375 ~---~~~dli~~~L~~dP~~R~ta~ell~  400 (423)
T 4fie_A          375 P---SLKGFLDRLLVRDPAQRATAAELLK  400 (423)
T ss_dssp             H---HHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             H---HHHHHHHHHcCCChhHCcCHHHHhc
Confidence            2   4566778999999999999999875

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=3.8e-45  Score=395.71  Aligned_cols=236  Identities=18%  Similarity=0.247  Sum_probs=191.1

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ++....+|+|+||.||+|++..+|+.||||++....   ....+.+.+|+..+.+ ++|||||++++++++++..|||||
T Consensus        34 y~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~-l~HpnIv~l~~~~~~~~~~yivmE  112 (311)
T 4aw0_A           34 FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR-LDHPFFVKLYFTFQDDEKLYFGLS  112 (311)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTT-CCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             cEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHh-CCCCCCCeEEEEEEeCCEEEEEEe
Confidence            455567899999999999999999999999986432   2223457788877777 799999999999999999999999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      ||+||+|.++++   .+++.+...++.||+.||+|||   +.+||||||||+|||++.++  .+|++|||++....    
T Consensus       113 y~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlKPeNILl~~~g--~vKl~DFGla~~~~~~~~  187 (311)
T 4aw0_A          113 YAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDM--HIQITDFGTAKVLSPESK  187 (311)
T ss_dssp             CCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTS--CEEECCCTTCEECCTTTT
T ss_pred             cCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEEcCCC--CEEEEEcCCceecCCCCC
Confidence            999999999996   4899999999999999999999   55999999999999998654  58999999987521    


Q ss_pred             ----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                          ...+||+.|||||++.+..|+.++||||+||++|||+||+.||.+..  ...+.+.+.   .. .      +.+..
T Consensus       188 ~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~--~~~~~~~i~---~~-~------~~~p~  255 (311)
T 4aw0_A          188 QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN--EGLIFAKII---KL-E------YDFPE  255 (311)
T ss_dssp             CCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHH---HT-C------CCCCT
T ss_pred             cccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHH---cC-C------CCCCc
Confidence                23579999999999999999999999999999999999999997642  111212111   11 1      11111


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVT  944 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~  944 (966)
                      ..+   +   ++.+++.+|++.||++|||++|+.
T Consensus       256 ~~s---~---~~~dli~~lL~~dp~~R~t~~e~~  283 (311)
T 4aw0_A          256 KFF---P---KARDLVEKLLVLDATKRLGCEEME  283 (311)
T ss_dssp             TCC---H---HHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred             ccC---H---HHHHHHHHHccCCHhHCcChHHHc
Confidence            222   2   456778899999999999999874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.5e-44  Score=429.71  Aligned_cols=454  Identities=20%  Similarity=0.231  Sum_probs=305.2

Q ss_pred             CCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCC--CCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEE
Q 002105           85 PHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPV--PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLD  162 (966)
Q Consensus        85 ~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  162 (966)
                      ...+++|+++|+++ .||..++   ++|++|+|++|.+++..  .+..+++|++|+|++|++++..|+.|..+++|++|+
T Consensus        31 ~~~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           31 ELESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             --CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            34588999999998 5887654   78888888888888754  367888888888888888887788888888888888


Q ss_pred             ccCCCCcccCCcCCCCCCCCCEEEccCCCCcc-cCCcccccCCcceEEEccCCCCCCCCCcCccCCCCC--CEEEeeccc
Q 002105          163 LGGNVLVGEIPLSISNITSLQIFTLASNQLIG-SIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSL--NHLDLVYNN  239 (966)
Q Consensus       163 L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L--~~L~Ls~N~  239 (966)
                      |++|.++ .+|..  .+++|++|++++|++++ .+|..|+++++|++|++++|.+++.   .+..+++|  ++|++++|.
T Consensus       107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred             CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence            8888887 56655  78888888888888876 3467888888888888888887753   34555555  888888888


Q ss_pred             c--cccCCcCCCCCC--ccceEeccccccCCCCCh-hhhcCCCCCEEEccCCc-----CcccCchhhcCCCCCceecccC
Q 002105          240 L--TGQIPPSFGNLS--NLRYLFLYQNKLTGSIPK-SILGLKSLVSFDLSDNY-----LSGEIPEEVIQLQNLEILHLFS  309 (966)
Q Consensus       240 l--~~~~p~~~~~l~--~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~-----l~~~~p~~~~~l~~L~~L~L~~  309 (966)
                      +  ++..|..+..+.  .+ .++++.|.+.+.++. .+..+++|+.|++++|.     +.+ ....+..+++|+.|++.+
T Consensus       181 l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          181 YHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             CCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEE
T ss_pred             ccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecC
Confidence            8  777777776654  23 456777777665554 35567778888887774     221 123455666666666666


Q ss_pred             CCCCCCC----CCCCCCCCCccEEEccCCcCcccCCccc-----cCCCCCcEEEccCCcccccCCCCccCCCCccEEEcc
Q 002105          310 NNFTGKI----PSSLASMPKLQVLQLWSNQFSGEIPSNL-----GKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILF  380 (966)
Q Consensus       310 N~l~~~~----p~~l~~l~~L~~L~L~~N~l~~~~p~~~-----~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~  380 (966)
                      +.+.+..    +..+ ..++|++|++++|.++|.+|..+     ..++.|+.++++.|.+  .+|.              
T Consensus       259 ~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~--------------  321 (562)
T 3a79_B          259 IETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSK--------------  321 (562)
T ss_dssp             EEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCH--------------
T ss_pred             CcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecCh--------------
Confidence            5544211    1111 12356666666666665555554     4444444444444443  2221              


Q ss_pred             CCCCCCCCCCcccc---CccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCC
Q 002105          381 SNSLEGKIPNSLST---CKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFS  457 (966)
Q Consensus       381 ~N~l~~~~p~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  457 (966)
                               ..+..   ..+|+.|++++|.+.....  ...+++|++|++++|++++.+|..+..+++|++|+|++|+++
T Consensus       322 ---------~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  390 (562)
T 3a79_B          322 ---------EALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK  390 (562)
T ss_dssp             ---------HHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC
T ss_pred             ---------hhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC
Confidence                     11111   1345555555555432211  134555666666666666555555566666666666666666


Q ss_pred             ccC--CC-CcCcccccccccccccccccCCC-cccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCc
Q 002105          458 GKL--PD-SFGSDQLENLDLSENRFSGTIPR-SFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPA  533 (966)
Q Consensus       458 ~~~--p~-~~~~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  533 (966)
                      +..  |. +..+++|++|++++|++++.+|. .+..+++|+.|++++|++++.+|..+.  ++|+.|+|++|+++ .+|.
T Consensus       391 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~  467 (562)
T 3a79_B          391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPK  467 (562)
T ss_dssp             BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCT
T ss_pred             CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccCh
Confidence            422  22 33556677777777777764444 477788888888888888877776654  68889999999888 6777


Q ss_pred             cCCCCCCCcEEeCCCCcCcccCCcc-cccCCCCCeeeCcCCcccccCCCC
Q 002105          534 SLSEMPVLGQLDLSENQLSGKIPQT-LGRVASLVQVNISHNHFHGSLPST  582 (966)
Q Consensus       534 ~l~~l~~L~~LdLs~N~l~g~~p~~-l~~l~~L~~l~ls~N~l~g~ip~~  582 (966)
                      .+..+++|+.|+|++|++++ +|.. +..+++|+.+++++|++.|.+|..
T Consensus       468 ~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~  516 (562)
T 3a79_B          468 DVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGI  516 (562)
T ss_dssp             TTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred             hhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence            77788999999999999984 5554 888899999999999998877643

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=3.8e-44  Score=382.82  Aligned_cols=236  Identities=19%  Similarity=0.252  Sum_probs=179.4

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      +.....+|+|+||.||+|+...+|+.||||++.....   ...+.+.+|+..+.+ ++|||||++++++.+++..|+|||
T Consensus        15 Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~-l~HpnIv~~~~~~~~~~~~~ivmE   93 (275)
T 3hyh_A           15 YQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRL-LRHPHIIKLYDVIKSKDEIIMVIE   93 (275)
T ss_dssp             CEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHH-CCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             eEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHH-CCCCCCCeEEEEEEECCEEEEEEe
Confidence            4455668999999999999989999999999864322   223457788888877 799999999999999999999999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-----
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-----  833 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-----  833 (966)
                      || +|+|.+++.   .+++.+...++.||+.||+|||   +.+||||||||+|||++++.  .+|++|||++...     
T Consensus        94 y~-~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiKP~NILl~~~~--~vkl~DFGla~~~~~~~~  167 (275)
T 3hyh_A           94 YA-GNELFDYIVQRDKMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHL--NVKIADFGLSNIMTDGNF  167 (275)
T ss_dssp             CC-CEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTC--CEEECCSSCC--------
T ss_pred             CC-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCChHHeEECCCC--CEEEeecCCCeecCCCCc
Confidence            99 689999986   4899999999999999999999   45899999999999998654  5899999998642     


Q ss_pred             CCCCcCCcccccccccCCCCC-CCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          834 DSKSINSSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       834 ~~~~~~~~~y~aPE~~~~~~~-~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                      ....+||+.|||||++.+..| +.++||||+||++|||+||+.||.+..  ...+.+.+.   .. .      +.+....
T Consensus       168 ~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~--~~~~~~~i~---~~-~------~~~p~~~  235 (275)
T 3hyh_A          168 LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDES--IPVLFKNIS---NG-V------YTLPKFL  235 (275)
T ss_dssp             -------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHH---HT-C------CCCCTTS
T ss_pred             cCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCC--HHHHHHHHH---cC-C------CCCCCCC
Confidence            234579999999999998886 579999999999999999999997542  111111111   11 1      1111122


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +   +   ++.+++.+|++.||++|||++|+++
T Consensus       236 s---~---~~~~li~~~L~~dP~~R~s~~eil~  262 (275)
T 3hyh_A          236 S---P---GAAGLIKRMLIVNPLNRISIHEIMQ  262 (275)
T ss_dssp             C---H---HHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             C---H---HHHHHHHHHccCChhHCcCHHHHHc
Confidence            2   2   4566788999999999999999876

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.5e-42  Score=422.21  Aligned_cols=516  Identities=22%  Similarity=0.178  Sum_probs=417.4

Q ss_pred             CCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCC--CCCCCCCcEEeCCCCCCCCc
Q 002105           70 AKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--IGSLSRLEILDLSNNMLSGK  147 (966)
Q Consensus        70 ~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~  147 (966)
                      +.+++ .+|+.+.  +.+++|||++|+|+ .||+..|..+++|++|||++|+|++..+  +.++++|++|+|++|+|++.
T Consensus        40 ~~~l~-~vP~~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l  115 (635)
T 4g8a_A           40 ELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL  115 (635)
T ss_dssp             TSCCS-SCCSSSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCCcC-ccCCCCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence            34455 3454442  47999999999998 7888888999999999999999997443  78999999999999999988


Q ss_pred             CCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcc-cCCcccccCCcceEEEccCCCCCCCCCcCccC
Q 002105          148 IPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIG-SIPREIGQLRNLKWIYLGYNNLSGEIPKEIGD  226 (966)
Q Consensus       148 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  226 (966)
                      .+..|.++++|++|+|++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+++..|..+..
T Consensus       116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~  195 (635)
T 4g8a_A          116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV  195 (635)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred             CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccc
Confidence            88889999999999999999998877889999999999999999976 46888999999999999999999888888876


Q ss_pred             CCCC----CEEEeecccccccCCcCCCCCCccceEeccccccCCC-CChhhhcCCCCCEEEccCCc------CcccCchh
Q 002105          227 LTSL----NHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGS-IPKSILGLKSLVSFDLSDNY------LSGEIPEE  295 (966)
Q Consensus       227 l~~L----~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~------l~~~~p~~  295 (966)
                      +.++    ..++++.|.+....+..+. ...++.+++.+|..... .+..+.++..++...+..+.      +.......
T Consensus       196 L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~  274 (635)
T 4g8a_A          196 LHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA  274 (635)
T ss_dssp             HHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred             hhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence            6554    4788999999876555544 45678899988865432 23457778888777664332      22223344


Q ss_pred             hcCCCCCceecccCCCCCC---CCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCC
Q 002105          296 VIQLQNLEILHLFSNNFTG---KIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSG  372 (966)
Q Consensus       296 ~~~l~~L~~L~L~~N~l~~---~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~  372 (966)
                      +..+..+....+..+....   ..+..+..+.+++.+.+.+|.+...  ..+....+++.|++++|.+.+..+.   .+.
T Consensus       275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~  349 (635)
T 4g8a_A          275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLK  349 (635)
T ss_dssp             TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCT
T ss_pred             cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc---cch
Confidence            4455566666555443322   2344566778899999999988654  3456678899999999999865543   456


Q ss_pred             CccEEEccCCCCCCCCCCccccCccCceeeccccccCC--cCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEec
Q 002105          373 SLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSG--ELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLN  450 (966)
Q Consensus       373 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~  450 (966)
                      .|..+.+..|.+....  ....+++|+.|++++|.+..  ..+..+..+.+|++++++.|.+... +..+..+++|+.++
T Consensus       350 ~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~  426 (635)
T 4g8a_A          350 SLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLD  426 (635)
T ss_dssp             TCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEE
T ss_pred             hhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchh
Confidence            7889999999876543  35678999999999999864  4567778899999999999988754 45577899999999


Q ss_pred             CCCCcCCccCCC--CcCcccccccccccccccccCCCcccCcCCCCEEEccCCcc-CCCChhhccccccccccccCCcee
Q 002105          451 LAGNNFSGKLPD--SFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKL-FGDIPEELSSCKKLVSLDLSNNQL  527 (966)
Q Consensus       451 Ls~N~l~~~~p~--~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l  527 (966)
                      ++.|+.....+.  +..+.+++.+++++|.+.+..|..+..++.|+.|+|++|++ .+.+|..|..+++|++|+|++|+|
T Consensus       427 l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L  506 (635)
T 4g8a_A          427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL  506 (635)
T ss_dssp             CTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             hhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCcc
Confidence            999988776654  44678999999999999999999999999999999999985 446788999999999999999999


Q ss_pred             ccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCcccccCCCCCc-c-CCCccccccCCCC
Q 002105          528 SGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGA-F-LAINATAVAGNDL  598 (966)
Q Consensus       528 ~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~ip~~~~-~-~~~~~~~~~gn~l  598 (966)
                      ++.+|..|+++++|+.|+|++|+|++..|..|..+++|+.||+++|++++.+|..-. + ..+......+|.+
T Consensus       507 ~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~  579 (635)
T 4g8a_A          507 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  579 (635)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred             CCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence            999999999999999999999999999999999999999999999999998886422 2 3455566778844

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.7e-43  Score=422.04  Aligned_cols=450  Identities=20%  Similarity=0.254  Sum_probs=332.1

Q ss_pred             EEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCC--CCCCCCCcEEeCCC
Q 002105           64 NAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--IGSLSRLEILDLSN  141 (966)
Q Consensus        64 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~  141 (966)
                      +.+|++++++++ +|..+.  ++|++|||++|.+. .+|+..|..+++|++|+|++|++++..|  ++.+++|++|||++
T Consensus        34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            678999999996 666654  89999999999998 5777778888999999999999997544  78999999999999


Q ss_pred             CCCCCcCCCCcCCCCCcCEEEccCCCCcc-cCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcc--eEEEccCCCC--
Q 002105          142 NMLSGKIPEEIGSFSGLKVLDLGGNVLVG-EIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNL--KWIYLGYNNL--  216 (966)
Q Consensus       142 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~~N~l--  216 (966)
                      |+++ .+|..  .+++|++|+|++|.+.+ .+|..|+++++|++|++++|++++.   .+..+++|  ++|++++|.+  
T Consensus       110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~  183 (562)
T 3a79_B          110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI  183 (562)
T ss_dssp             SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred             CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence            9998 56666  89999999999999987 4578999999999999999999863   45555555  9999999999  


Q ss_pred             CCCCCcCccCCC-CCCEEEeecccccccCCc-CCCCCCccceEeccccc-----cCCCCChhhhcCCCCCEEEccCCcCc
Q 002105          217 SGEIPKEIGDLT-SLNHLDLVYNNLTGQIPP-SFGNLSNLRYLFLYQNK-----LTGSIPKSILGLKSLVSFDLSDNYLS  289 (966)
Q Consensus       217 ~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~n~-----l~~~~p~~l~~l~~L~~L~Ls~N~l~  289 (966)
                      ++..|..+..+. ..-.++++.|.+.+.++. .+.++++|+.|++++|+     +.+ ....+..+++|+.|+++++.++
T Consensus       184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~  262 (562)
T 3a79_B          184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETT  262 (562)
T ss_dssp             CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEEC
T ss_pred             cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCc
Confidence            888888888765 122568889988876654 46789999999999985     222 2345778899999999988876


Q ss_pred             ccCchh---hcCCCCCceecccCCCCCCCCCCCC-----CCCCCccEEEccCCcCcccCCc-ccc---CCCCCcEEEccC
Q 002105          290 GEIPEE---VIQLQNLEILHLFSNNFTGKIPSSL-----ASMPKLQVLQLWSNQFSGEIPS-NLG---KQNNLTVIDLST  357 (966)
Q Consensus       290 ~~~p~~---~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~~p~-~~~---~~~~L~~L~Ls~  357 (966)
                      +.....   .....+|++|++++|.++|.+|..+     ..++.|+.+++..|.+  .+|. .+.   ...+|+.|++++
T Consensus       263 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~  340 (562)
T 3a79_B          263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISD  340 (562)
T ss_dssp             HHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEES
T ss_pred             HHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccC
Confidence            532211   1234599999999999999999887     7888888888888877  4552 222   235788999998


Q ss_pred             CcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCc--CChhhcCCCcccEEcccCCCCCCc
Q 002105          358 NFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGE--LSSEFTRLPLVYFLDISGNDLSGR  435 (966)
Q Consensus       358 N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~LdLs~N~l~~~  435 (966)
                      |.+.....  ...+++|+.|++++|++++.+|..+..+++|++|++++|++++.  +|..|..+++              
T Consensus       341 n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~--------------  404 (562)
T 3a79_B          341 TPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS--------------  404 (562)
T ss_dssp             SCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT--------------
T ss_pred             CCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC--------------
Confidence            88753211  13455566666666666555555555555555555555555542  2233444444              


Q ss_pred             cCcchhccCCCcEecCCCCcCCccCCC--CcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccc
Q 002105          436 IGEQKWEMTSLQMLNLAGNNFSGKLPD--SFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSS  513 (966)
Q Consensus       436 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  513 (966)
                                |++|++++|++++.+|.  +..+++|++|++++|++++.+|..+.  ++|+.|+|++|+++ .+|..+..
T Consensus       405 ----------L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~  471 (562)
T 3a79_B          405 ----------LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTH  471 (562)
T ss_dssp             ----------CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTS
T ss_pred             ----------CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcC
Confidence                      45555555555443332  22345666666666666665555544  57888888888887 56766668


Q ss_pred             cccccccccCCceeccccCcc-CCCCCCCcEEeCCCCcCcccCC
Q 002105          514 CKKLVSLDLSNNQLSGHIPAS-LSEMPVLGQLDLSENQLSGKIP  556 (966)
Q Consensus       514 l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~LdLs~N~l~g~~p  556 (966)
                      +++|++|+|++|+++ .+|.. +..+++|+.|++++|++++..|
T Consensus       472 l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          472 LQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             SCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            888888888888888 45554 8888888999999998887655

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=2.8e-44  Score=389.17  Aligned_cols=232  Identities=22%  Similarity=0.317  Sum_probs=180.5

Q ss_pred             ccccccCCCCCccEEEEEEEe---cCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSL---ANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~---~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      ++.+..+|+|+||.||+|+..   .+++.||||++....  ......+.+|+..+.+ ++|||||++++++.+++..|||
T Consensus        26 Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~-l~HpnIv~l~~~~~~~~~~~iv  104 (304)
T 3ubd_A           26 FELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVE-VNHPFIVKLHYAFQTEGKLYLI  104 (304)
T ss_dssp             EEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCC-CCCTTEECEEEEEEETTEEEEE
T ss_pred             cEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHH-CCCCCCCeEEEEEEECCEEEEE
Confidence            456667899999999999874   356789999986432  2233457778777766 7999999999999999999999


Q ss_pred             EEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec---
Q 002105          760 YEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT---  833 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~---  833 (966)
                      ||||+||+|.++++   .+++.+...++.||+.||+|||   +.+||||||||+|||++.++  .+|++|||++...   
T Consensus       105 mEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g--~vKl~DFGla~~~~~~  179 (304)
T 3ubd_A          105 LDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEG--HIKLTDFGLSKESIDH  179 (304)
T ss_dssp             ECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTS--CEEEESSEEEEC----
T ss_pred             EEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHeEEcCCC--CEEecccccceeccCC
Confidence            99999999999996   3899999999999999999999   55899999999999999654  5899999998642   


Q ss_pred             ---CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          834 ---DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       834 ---~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                         ....+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.. ..+.. ..+.   .. .      +.+..
T Consensus       180 ~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~-~~~~~-~~i~---~~-~------~~~p~  247 (304)
T 3ubd_A          180 EKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKD-RKETM-TMIL---KA-K------LGMPQ  247 (304)
T ss_dssp             -CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHH-HHHH---HC-C------CCCCT
T ss_pred             CccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcC-HHHHH-HHHH---cC-C------CCCCC
Confidence               234579999999999999999999999999999999999999997642 11111 1111   11 1      11111


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCA  940 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~  940 (966)
                      ..+   +   ++.+++.+|++.||++|||+
T Consensus       248 ~~s---~---~~~~li~~~L~~dP~~R~ta  271 (304)
T 3ubd_A          248 FLS---P---EAQSLLRMLFKRNPANRLGA  271 (304)
T ss_dssp             TSC---H---HHHHHHHHHTCSSGGGSTTC
T ss_pred             cCC---H---HHHHHHHHHcccCHHHCCCC
Confidence            222   2   45677889999999999995

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=9.4e-44  Score=386.95  Aligned_cols=236  Identities=20%  Similarity=0.362  Sum_probs=178.1

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCC---------
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK---------  754 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~---------  754 (966)
                      ++.+..+|+||||.||+|+...+|+.||||++..... ...+.+.+|+..+.+ ++|||||++++++.+.+         
T Consensus         7 y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~-l~HpnIV~~~~~~~~~~~~~~~~~~~   85 (299)
T 4g31_A            7 FEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAK-LEHPGIVRYFNAWLEKNTTEKLQPSS   85 (299)
T ss_dssp             EEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTT-CCCTTBCCEEEEEEEEC---------
T ss_pred             CEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHh-CCCCCCCeEEEEEEecCccccccccC
Confidence            3455678999999999999989999999999864432 234567888888887 69999999999987544         


Q ss_pred             ---eeEEEEEccCCCCHHHHHHc------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEe
Q 002105          755 ---AAYLVYEYIEGKELSEVLRN------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS  825 (966)
Q Consensus       755 ---~~~lv~Ey~~~g~L~~~l~~------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~  825 (966)
                         ..|+|||||++|+|.++++.      .++.....++.||++||+|||   +.+||||||||+|||++.++  .+|++
T Consensus        86 ~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH---~~~IiHRDlKp~NILl~~~~--~vKl~  160 (299)
T 4g31_A           86 PKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDD--VVKVG  160 (299)
T ss_dssp             -CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTC--CEEEC
T ss_pred             CCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH---HCcCccccCcHHHeEECCCC--cEEEc
Confidence               37999999999999999963      567778899999999999999   45899999999999999765  57999


Q ss_pred             ccccceecC------------------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhH
Q 002105          826 VPGLAYCTD------------------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESI  887 (966)
Q Consensus       826 ~~~~~~~~~------------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~  887 (966)
                      |||++....                  ...+||+.|||||++.+..|+.++|||||||++|||++   ||...   .+..
T Consensus       161 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~---~~~~  234 (299)
T 4g31_A          161 DFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQ---MERV  234 (299)
T ss_dssp             CCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSH---HHHH
T ss_pred             cCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCc---cHHH
Confidence            999986421                  12469999999999999999999999999999999997   76532   1111


Q ss_pred             HHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          888 VEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       888 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       ..... .....    ..|.       ..+...+..+++.+|++.||++|||+.|+++
T Consensus       235 -~~~~~-~~~~~----~p~~-------~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  279 (299)
T 4g31_A          235 -RTLTD-VRNLK----FPPL-------FTQKYPCEYVMVQDMLSPSPMERPEAINIIE  279 (299)
T ss_dssp             -HHHHH-HHTTC----CCHH-------HHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -HHHHH-HhcCC----CCCC-------CcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence             11111 01111    1111       1122234556888999999999999999876

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=8e-42  Score=377.17  Aligned_cols=290  Identities=31%  Similarity=0.532  Sum_probs=208.0

Q ss_pred             CCcHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCc--ccceeeCCC---CCEEEEEcCCCCccc--cccccccCCCCCCE
Q 002105           17 TCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCK--WNGISCQNS---THVNAIELSAKNISG--KISSSIFHLPHVES   89 (966)
Q Consensus        17 ~~~~~~~~~Ll~~k~~~~~~~~~l~~w~~~~~~c~--w~gv~c~~~---~~v~~L~L~~~~l~~--~~~~~~~~l~~L~~   89 (966)
                      .|+++|++||++||+++.+|. .+++|..+.+||.  |.||+|+..   .+|+.|+|++++++|  .+|+++.++++|++
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~   80 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence            599999999999999998886 7899987779998  999999865   599999999999999  89999999999999


Q ss_pred             EEcCC-CCCccccChhhhhcCCCCcEEECCCCCCCCCCC--CCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCC
Q 002105           90 INLSS-NQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGN  166 (966)
Q Consensus        90 L~Ls~-N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  166 (966)
                      |+|++ |.+.+.+|..+ ..+++|++|+|++|.+++..|  ++.+++|++|+|++|.+++.+|..+..+++|++|+|++|
T Consensus        81 L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  159 (313)
T 1ogq_A           81 LYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             eeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence            99995 99998888765 445777777777777765444  466666777777777666666666666666666666666


Q ss_pred             CCcccCCcCCCCCC-CCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCC
Q 002105          167 VLVGEIPLSISNIT-SLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIP  245 (966)
Q Consensus       167 ~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  245 (966)
                      .+++.+|..+++++ +|++|++++|++++.+|..++.++ |++|++++|.+++..|..|..+++|++|++++|.+++.+|
T Consensus       160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  238 (313)
T 1ogq_A          160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG  238 (313)
T ss_dssp             CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred             cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC
Confidence            66666666666665 666666666666666666666665 6666666666666566666666666666666666655444


Q ss_pred             cCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCC
Q 002105          246 PSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNN  311 (966)
Q Consensus       246 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  311 (966)
                      . +..+++|++|++++|++++.+|..+..+++|++|++++|.++|.+|.. ..+++|+.|++++|.
T Consensus       239 ~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          239 K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             G-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             c-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            3 555566666666666666556666666666666666666666555544 455555555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.5e-41  Score=389.75  Aligned_cols=266  Identities=23%  Similarity=0.258  Sum_probs=115.0

Q ss_pred             CCCcEEECCCCCCCCCCC--CCCCCCCcEEeCCCCCCCCcCCCCcCCCCCc-------------CEEEccCCCCcccCCc
Q 002105          110 NSLRFLNLSNNNFTGPVP--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGL-------------KVLDLGGNVLVGEIPL  174 (966)
Q Consensus       110 ~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------------~~L~L~~N~l~~~~p~  174 (966)
                      ++|++|++++|.+ +.+|  ++++++|++|++++|.+.|.+|..++++.+|             ++|++++|.+++ +|.
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~   88 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence            5666666666666 4444  4666666666666666666666666666554             555555555443 222


Q ss_pred             CCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCcc
Q 002105          175 SISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNL  254 (966)
Q Consensus       175 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  254 (966)
                      .   .++|++|++++|.+++ +|..   +++|++|++++|.+++ +|..   .++|++|++++|++++ +| .|+++++|
T Consensus        89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L  155 (454)
T 1jl5_A           89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL  155 (454)
T ss_dssp             C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred             C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence            1   2445555555555554 3332   2445555555555543 2211   1345555555555553 34 35555555


Q ss_pred             ceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCC
Q 002105          255 RYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSN  334 (966)
Q Consensus       255 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  334 (966)
                      ++|++++|++++ +|..+   .+|++|++++|.+++ +| .+..+++|+.|++++|.+++ +|...   ++|++|++++|
T Consensus       156 ~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n  225 (454)
T 1jl5_A          156 KIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNN  225 (454)
T ss_dssp             CEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSS
T ss_pred             CEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCC
Confidence            555555555543 33221   345555555555543 23 34455555555555555543 22211   34555555555


Q ss_pred             cCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCC
Q 002105          335 QFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSG  410 (966)
Q Consensus       335 ~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  410 (966)
                      .++ .+| .++.+++|+.|++++|.+++ +|..   ..+|+.|++++|++++ +|..   +++|++|++++|++++
T Consensus       226 ~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          226 ILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred             cCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence            544 333 24445555555555555443 2221   1344444444444443 2221   1344444444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2e-40  Score=386.67  Aligned_cols=363  Identities=20%  Similarity=0.209  Sum_probs=244.1

Q ss_pred             CCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCC---CCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEE
Q 002105           85 PHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP---IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVL  161 (966)
Q Consensus        85 ~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  161 (966)
                      ++|++|||++|.+++ +++..+..+++|++|+|++|.+.+.++   +..+++|++|+|++|.+++..|..|+++++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCE-ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCc-CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence            678999999999884 544556667888888888888875432   5778888888888888888788888888888888


Q ss_pred             EccCCCCcccCCcC--CCCCCCCCEEEccCCCCcccCCcc-cccCCcceEEEccCCCCCCCCCcCccCC--CCCCEEEee
Q 002105          162 DLGGNVLVGEIPLS--ISNITSLQIFTLASNQLIGSIPRE-IGQLRNLKWIYLGYNNLSGEIPKEIGDL--TSLNHLDLV  236 (966)
Q Consensus       162 ~L~~N~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l--~~L~~L~Ls  236 (966)
                      +|++|.+.+.+|..  |.++++|++|++++|++++..|.. +.++++|++|++++|.+++..|..+..+  .+|+.|+++
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS  188 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence            88888887755544  788888888888888888776765 7788888888888888887777777665  577788888


Q ss_pred             cccccccCCcCC--------CCCCccceEeccccccCCCCChhhhcC---CCCCEEEccCCcCcccCchhhcCCCCCcee
Q 002105          237 YNNLTGQIPPSF--------GNLSNLRYLFLYQNKLTGSIPKSILGL---KSLVSFDLSDNYLSGEIPEEVIQLQNLEIL  305 (966)
Q Consensus       237 ~N~l~~~~p~~~--------~~l~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  305 (966)
                      +|.+.+..+..+        ..+++|++|++++|++++..|..+...   ++|+.|++++|.+.+...            
T Consensus       189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------  256 (455)
T 3v47_A          189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF------------  256 (455)
T ss_dssp             TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT------------
T ss_pred             cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc------------
Confidence            887775444332        245667777777777666666555443   566666666665443211            


Q ss_pred             cccCCCCCCCCCCCCCC--CCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCC
Q 002105          306 HLFSNNFTGKIPSSLAS--MPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNS  383 (966)
Q Consensus       306 ~L~~N~l~~~~p~~l~~--l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~  383 (966)
                        ..+.+.+..+..+..  .++|+.|++++|.+.+..|..+..+++|+.|+|++|.+++..|..|..+++|+.|++++|.
T Consensus       257 --~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  334 (455)
T 3v47_A          257 --GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF  334 (455)
T ss_dssp             --TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             --chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc
Confidence              111122112222222  2466666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCccCCC
Q 002105          384 LEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPD  462 (966)
Q Consensus       384 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  462 (966)
                      +++..|..+..+++|++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|.
T Consensus       335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            6655566666666666666666666666666666666666666666666655555555566666666666666655553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.8e-40  Score=384.70  Aligned_cols=418  Identities=22%  Similarity=0.265  Sum_probs=250.4

Q ss_pred             CEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCC
Q 002105           62 HVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSN  141 (966)
Q Consensus        62 ~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~  141 (966)
                      +++.|++++|++ |.+|++++++++|++|++++|.+.|.+|..+.. +++|+++++++|..         .+|++|++++
T Consensus        12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~-l~~L~~l~l~~c~~---------~~l~~L~l~~   80 (454)
T 1jl5_A           12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGE-QREMAVSRLRDCLD---------RQAHELELNN   80 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTTSCC-CHHHHHHHHHHHHH---------HTCSEEECTT
T ss_pred             cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccccc-chhcchhhhhhhhc---------cCCCEEEecC
Confidence            455566666666 566666666666666666666666556554322 24444444443321         3579999999


Q ss_pred             CCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCC
Q 002105          142 NMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIP  221 (966)
Q Consensus       142 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  221 (966)
                      |.+++ +|..   .++|++|++++|.+++ +|..   +++|++|++++|++++ +|..   .++|++|++++|.+++ +|
T Consensus        81 ~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp  147 (454)
T 1jl5_A           81 LGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP  147 (454)
T ss_dssp             SCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC
T ss_pred             Ccccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc
Confidence            99986 4542   4789999999999987 6653   4889999999999986 3322   2689999999999986 77


Q ss_pred             cCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCC
Q 002105          222 KEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQN  301 (966)
Q Consensus       222 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  301 (966)
                       +++++++|++|++++|++++ +|..+   .+|++|++++|++++ +| .+.++++|++|++++|.+++ +|..   .++
T Consensus       148 -~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~  216 (454)
T 1jl5_A          148 -ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLS  216 (454)
T ss_dssp             -CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTT
T ss_pred             -ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCc
Confidence             69999999999999999986 66654   589999999999987 56 68999999999999999986 4433   258


Q ss_pred             CceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccC
Q 002105          302 LEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFS  381 (966)
Q Consensus       302 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~  381 (966)
                      |+.|++++|.++ .+|. ++.+++|++|++++|++++ +|..   .++|+.|++++|.+++ +|..   .++|+.|++++
T Consensus       217 L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~  286 (454)
T 1jl5_A          217 LESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSE  286 (454)
T ss_dssp             CCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred             ccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcC
Confidence            999999999998 5774 8999999999999999986 5543   4789999999999997 5554   37899999999


Q ss_pred             CCCCCCCCCccccCccCceeeccccccCCcCChhhcCC-CcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCccC
Q 002105          382 NSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRL-PLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKL  460 (966)
Q Consensus       382 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  460 (966)
                      |++++. |..   .++|+.|++++|++++..     .+ ++|++|++++|++++ +|..   ++                
T Consensus       287 N~l~~l-~~~---~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---~~----------------  337 (454)
T 1jl5_A          287 NIFSGL-SEL---PPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL---PP----------------  337 (454)
T ss_dssp             SCCSEE-SCC---CTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC---CT----------------
T ss_pred             CccCcc-cCc---CCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-cccc---CC----------------
Confidence            999872 211   157788888888776521     22 355555555555554 2221   23                


Q ss_pred             CCCcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCC--CChhhccccccccccccCCceeccccCccCCCC
Q 002105          461 PDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFG--DIPEELSSCKKLVSLDLSNNQLSGHIPASLSEM  538 (966)
Q Consensus       461 p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  538 (966)
                             +|++|++++|++++ +|.   .+++|+.|++++|++++  .+|..+..+        +.|.+.|.+|..   +
T Consensus       338 -------~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~  395 (454)
T 1jl5_A          338 -------RLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---P  395 (454)
T ss_dssp             -------TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC------------
T ss_pred             -------cCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---c
Confidence                   45555555555542 333   24566666666666665  455544332        335566666653   3


Q ss_pred             CCCcEEeCCCCcCcc--cCCcccccCCCCCeeeCcCCcccccCCC
Q 002105          539 PVLGQLDLSENQLSG--KIPQTLGRVASLVQVNISHNHFHGSLPS  581 (966)
Q Consensus       539 ~~L~~LdLs~N~l~g--~~p~~l~~l~~L~~l~ls~N~l~g~ip~  581 (966)
                      ++|+.||+++|++++  .+|.+      ++.|.+.+|.+.+.+|.
T Consensus       396 ~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~  434 (454)
T 1jl5_A          396 QNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEF  434 (454)
T ss_dssp             ---------------------------------------------
T ss_pred             CcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcccc
Confidence            567777777777776  56644      34455677777766553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.6e-40  Score=385.73  Aligned_cols=383  Identities=22%  Similarity=0.211  Sum_probs=274.7

Q ss_pred             CEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccC-CcCCCCCCccceEeccc
Q 002105          183 QIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQI-PPSFGNLSNLRYLFLYQ  261 (966)
Q Consensus       183 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~  261 (966)
                      +.++.+++.++ .+|. +  .++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ |..|.++++|++|+|++
T Consensus        13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            34566666655 3444 2  256777777777777666777777777777777777766444 45567777777777777


Q ss_pred             cccCCCCChhhhcCCCCCEEEccCCcCcccCchh--hcCCCCCceecccCCCCCCCCCCC-CCCCCCccEEEccCCcCcc
Q 002105          262 NKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEE--VIQLQNLEILHLFSNNFTGKIPSS-LASMPKLQVLQLWSNQFSG  338 (966)
Q Consensus       262 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~  338 (966)
                      |++++..|..|.++++|++|++++|.+++..|..  +..+++|++|++++|.+++..|.. +.++++|++|++++|.+++
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            7777666677777777777777777776644443  666666666666666666655554 5666666666666666666


Q ss_pred             cCCccccCC--CCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhh
Q 002105          339 EIPSNLGKQ--NNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEF  416 (966)
Q Consensus       339 ~~p~~~~~~--~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~  416 (966)
                      ..|..+..+  .+|+.|++++|.+.+..+..+..                .....+..+++|++|++++|++++..|..+
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  232 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------------EKCGNPFKNTSITTLDLSGNGFKESMAKRF  232 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred             cChhhhhccccccccccccccCcccccchhhccc----------------cccccccccceeeeEecCCCcccccchhhh
Confidence            655555544  45666666666655433322110                000012234556666666666665555544


Q ss_pred             cCC---CcccEEcccCCCCCC----------ccCcchhc--cCCCcEecCCCCcCCccCCCC-cCccccccccccccccc
Q 002105          417 TRL---PLVYFLDISGNDLSG----------RIGEQKWE--MTSLQMLNLAGNNFSGKLPDS-FGSDQLENLDLSENRFS  480 (966)
Q Consensus       417 ~~l---~~L~~LdLs~N~l~~----------~~~~~~~~--l~~L~~L~Ls~N~l~~~~p~~-~~~~~L~~L~Ls~N~l~  480 (966)
                      ..+   ++++.|++++|.+.+          ..+..+..  .++|+.|++++|.+++..|.. ..+++|++|++++|+++
T Consensus       233 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  312 (455)
T 3v47_A          233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN  312 (455)
T ss_dssp             HHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             hccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc
Confidence            332   566666666654433          22222222  368999999999999988884 46789999999999999


Q ss_pred             ccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccc
Q 002105          481 GTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLG  560 (966)
Q Consensus       481 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~  560 (966)
                      +..|..|..+++|+.|+|++|++.+..|..+..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+.
T Consensus       313 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  392 (455)
T 3v47_A          313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD  392 (455)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888889


Q ss_pred             cCCCCCeeeCcCCcccccCCCCCcc
Q 002105          561 RVASLVQVNISHNHFHGSLPSTGAF  585 (966)
Q Consensus       561 ~l~~L~~l~ls~N~l~g~ip~~~~~  585 (966)
                      .+++|+.|++++|+++|.+|....+
T Consensus       393 ~l~~L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          393 RLTSLQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             TCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             cCCcccEEEccCCCcccCCCcchHH
Confidence            9999999999999999999965443

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=2.4e-40  Score=370.02  Aligned_cols=191  Identities=20%  Similarity=0.288  Sum_probs=162.5

Q ss_pred             ccccccCCCCCccEEEEEEEe---cCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSL---ANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~---~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      +.....+|+|+||.||+|+..   .+++.||+|++....  ....+.+|+..+.++.+|||||++++++.+++..|+|||
T Consensus        23 Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~lvmE  100 (361)
T 4f9c_A           23 FKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMP  100 (361)
T ss_dssp             CEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEEEEE
T ss_pred             EEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEEEEEe
Confidence            344556899999999999874   356789999986543  234567888888775579999999999999999999999


Q ss_pred             ccCCCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-------
Q 002105          762 YIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------  834 (966)
Q Consensus       762 y~~~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-------  834 (966)
                      ||+||+|.++++.+++.+...++.|++.||+|||   +.+||||||||+|||++.+ ...+|++|||++....       
T Consensus       101 ~~~g~~L~~~~~~l~~~~~~~~~~qll~al~ylH---~~gIiHRDiKPeNiLl~~~-~~~~kl~DFGla~~~~~~~~~~~  176 (361)
T 4f9c_A          101 YLEHESFLDILNSLSFQEVREYMLNLFKALKRIH---QFGIVHRDVKPSNFLYNRR-LKKYALVDFGLAQGTHDTKIELL  176 (361)
T ss_dssp             CCCCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETT-TTEEEECCCTTCEECTTCSCGGG
T ss_pred             CCCcccHHHHHcCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCCHHHeEEeCC-CCeEEECcCCCCcccCCcccccc
Confidence            9999999999999999999999999999999999   5599999999999999864 2478999999985321       


Q ss_pred             ---------------------------CCCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCC
Q 002105          835 ---------------------------SKSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADF  881 (966)
Q Consensus       835 ---------------------------~~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~  881 (966)
                                                 ...+||+.|||||++.+. .|+.++||||+||++|||+||+.||....
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~  251 (361)
T 4f9c_A          177 KFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKAS  251 (361)
T ss_dssp             GGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCS
T ss_pred             ccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCC
Confidence                                       123699999999998775 58999999999999999999999996543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.7e-39  Score=375.11  Aligned_cols=363  Identities=20%  Similarity=0.215  Sum_probs=227.2

Q ss_pred             ccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCC
Q 002105           75 GKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGS  154 (966)
Q Consensus        75 ~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  154 (966)
                      +..+.++.++++|++|||++|.+++ +| . +..+++|++|+|++|++++. |++.+++|++|+|++|.+++. |  ++.
T Consensus        32 ~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~l~~~-~--~~~  104 (457)
T 3bz5_A           32 ATDTISEEQLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNL-D--VTP  104 (457)
T ss_dssp             TTSEEEHHHHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred             cccccChhHcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeE-ccccCCCCCEEECcCCCCcee-e--cCC
Confidence            3444567778888899999888884 55 2 55668888888888888863 678888888888888888864 3  778


Q ss_pred             CCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEE
Q 002105          155 FSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLD  234 (966)
Q Consensus       155 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  234 (966)
                      +++|++|++++|.+++ +|  ++++++|++|++++|++++.   .++.+++|++|++++|...+.+  .++.+++|++|+
T Consensus       105 l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~  176 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD  176 (457)
T ss_dssp             CTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred             CCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence            8888888888888876 33  77888888888888888763   2677778888888887655554  467777777777


Q ss_pred             eecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCC
Q 002105          235 LVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTG  314 (966)
Q Consensus       235 Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  314 (966)
                      +++|++++ +|  ++.+++|++|++++|++++.   .+..+++|+.|++++|++++ +|  +..+++|+.|++++|++++
T Consensus       177 ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          177 CSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             CCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence            77777775 34  66777777777777777654   26666777777777777765 34  5566666666666666665


Q ss_pred             CCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCcccc
Q 002105          315 KIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLST  394 (966)
Q Consensus       315 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~  394 (966)
                      ..   ++.+++|+.|+++.|              +|+.|++++|.+.+.+|  +                        ..
T Consensus       248 ~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~------------------------~~  284 (457)
T 3bz5_A          248 LD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--A------------------------EG  284 (457)
T ss_dssp             CC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--C------------------------TT
T ss_pred             cC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--c------------------------cc
Confidence            43   334555666655543              23445555555544443  2                        23


Q ss_pred             CccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCccCCCCcCccccccccc
Q 002105          395 CKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDL  474 (966)
Q Consensus       395 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~L  474 (966)
                      +++|+.|++++|.+.+.+|.   ..+.|+.|++++|             ++|+.|++++|++++. + +..+++|+.|++
T Consensus       285 l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~-l~~l~~L~~L~l  346 (457)
T 3bz5_A          285 CRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D-VSHNTKLKSLSC  346 (457)
T ss_dssp             CTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C-CTTCTTCSEEEC
T ss_pred             cccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c-cccCCcCcEEEC
Confidence            44444444444444444332   2233333333333             2444455555555442 1 334444555555


Q ss_pred             ccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccC
Q 002105          475 SENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASL  535 (966)
Q Consensus       475 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  535 (966)
                      ++|++++        ++.|..|++++|+++|.     ..+..|..+++++|+++|.+|..+
T Consensus       347 ~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          347 VNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             CSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             CCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence            5555543        12333444555555543     244556666666666666666544

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=9.2e-40  Score=369.14  Aligned_cols=252  Identities=18%  Similarity=0.232  Sum_probs=186.1

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEec------CCee
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS------EKAA  756 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~------~~~~  756 (966)
                      ++.+..+|+|+||.||+|++..+|+.||||++.....  ...+.+.+|+..+.+ ++|||||++++++..      .+.+
T Consensus        56 Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~-l~HpnIv~l~~~~~~~~~~~~~~~~  134 (398)
T 4b99_A           56 YEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKH-FKHDNIIAIKDILRPTVPYGEFKSV  134 (398)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHH-CCCTTBCCEEEECCCSSCTTTCCCE
T ss_pred             eEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHh-cCCCCcceEeeeeecccccccCCEE
Confidence            4455678999999999999999999999999864322  223457788888877 799999999998764      3678


Q ss_pred             EEEEEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec
Q 002105          757 YLVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT  833 (966)
Q Consensus       757 ~lv~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~  833 (966)
                      |||||||+ |+|.+++.   .+++.....++.||+.||+|||   +.+||||||||+|||++.++  .+|++|||++...
T Consensus       135 ~ivmE~~~-g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NIl~~~~~--~~Ki~DFGla~~~  208 (398)
T 4b99_A          135 YVVLDLME-SDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMH---SAQVIHRDLKPSNLLVNENC--ELKIGDFGMARGL  208 (398)
T ss_dssp             EEEEECCS-EEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTC--CEEECCCTTCBCC
T ss_pred             EEEEeCCC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCcCcCCCcCccccccCCCC--CEEEeecceeeec
Confidence            99999996 78999996   4899999999999999999999   55999999999999999654  5799999998532


Q ss_pred             ----------CCCCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccc
Q 002105          834 ----------DSKSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDT  902 (966)
Q Consensus       834 ----------~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  902 (966)
                                ....+||+.|||||++.+. .|+.++||||+||++|||+||+.||.+... .+.+...... ........
T Consensus       209 ~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~-~~~l~~I~~~-~g~p~~~~  286 (398)
T 4b99_A          209 CTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNY-VHQLQLIMMV-LGTPSPAV  286 (398)
T ss_dssp             -------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSH-HHHHHHHHHH-HCCCCGGG
T ss_pred             ccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCH-HHHHHHHHHh-cCCCChHH
Confidence                      1245899999999998775 569999999999999999999999976422 1211111111 10000000


Q ss_pred             c--cc--------ccccCCCcchHH-----HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          903 W--VD--------PFIRGHVSSIQN-----EIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       903 ~--~d--------~~~~~~~~~~~~-----~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +  +.        ..+....+...+     .-.++.+++.+|++.||++|||++|+++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  344 (398)
T 4b99_A          287 IQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR  344 (398)
T ss_dssp             TC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             hhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence            0  00        000000000000     0135667889999999999999999875

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=6e-40  Score=389.12  Aligned_cols=243  Identities=20%  Similarity=0.325  Sum_probs=195.9

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ++....+|+|+||.||+|+...+|+.||+|++........+.+.+|+..+.+ ++|||||++++++.+++.+|||||||+
T Consensus       159 Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~-l~hpnIv~l~~~~~~~~~~~iv~E~~~  237 (573)
T 3uto_A          159 YDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSV-LRHPTLVNLHDAFEDDNEMVMIYEFMS  237 (573)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHH-TCCTTBCCEEEEEECSSEEEEEEECCC
T ss_pred             cEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHh-CCCCCCCeEEEEEEECCEEEEEEeecC
Confidence            3445567999999999999999999999999876554445567788888777 799999999999999999999999999


Q ss_pred             CCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-----
Q 002105          765 GKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----  835 (966)
Q Consensus       765 ~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-----  835 (966)
                      ||+|.+++.    .+++.+...++.||+.||+|||   +.+|+||||||+|||++.+....+|++|||++.....     
T Consensus       238 gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~~  314 (573)
T 3uto_A          238 GGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVK  314 (573)
T ss_dssp             CCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEEE
T ss_pred             CCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCCcee
Confidence            999999994    3789999999999999999999   5599999999999999977667899999999876432     


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ..+||+.|||||++.+..|+.++||||+||++|||++|+.||.+... .+.. ..+...  ...    +++......+  
T Consensus       315 ~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~-~~~~-~~i~~~--~~~----~~~~~~~~~s--  384 (573)
T 3uto_A          315 VTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEND-DETL-RNVKSC--DWN----MDDSAFSGIS--  384 (573)
T ss_dssp             EECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH-HHHH-HHHHTT--CCC----CCSGGGTTSC--
T ss_pred             eeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH-HHHH-HHHHhC--CCC----CCcccccCCC--
Confidence            23799999999999999999999999999999999999999976421 1111 211110  000    1111111222  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       +   ++.+++.+|++.||++|||+.|+++
T Consensus       385 -~---~~~dli~~~L~~dp~~R~t~~e~l~  410 (573)
T 3uto_A          385 -E---DGKDFIRKLLLADPNTRMTIHQALE  410 (573)
T ss_dssp             -H---HHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             -H---HHHHHHHHHccCChhHCcCHHHHhc
Confidence             2   4567788999999999999999875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.4e-38  Score=369.22  Aligned_cols=354  Identities=21%  Similarity=0.195  Sum_probs=182.1

Q ss_pred             CCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceE
Q 002105          129 GSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKW  208 (966)
Q Consensus       129 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  208 (966)
                      +.+++|++||+++|.+++. | .++.+++|++|+|++|.+++. |  ++.+++|++|++++|.+++. |  ++++++|++
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~  110 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTY  110 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred             hHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence            3344455555555555432 3 345555555555555555442 2  45555555555555555442 2  455555555


Q ss_pred             EEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcC
Q 002105          209 IYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYL  288 (966)
Q Consensus       209 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  288 (966)
                      |++++|.+++ +|  ++.+++|++|++++|++++. +  ++++++|++|++++|+..+.+  .+..+++|++|++++|.+
T Consensus       111 L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l  182 (457)
T 3bz5_A          111 LNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI  182 (457)
T ss_dssp             EECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence            5555555554 22  55555555555555555542 2  555556666666665443333  245556666666666666


Q ss_pred             cccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCc
Q 002105          289 SGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETL  368 (966)
Q Consensus       289 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~  368 (966)
                      ++ +|  +..+++|+.|++++|.+++.   .++.+++|+.|++++|++++ +|  ++.+++|+.|++++|.+++..   +
T Consensus       183 ~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~  250 (457)
T 3bz5_A          183 TE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---V  250 (457)
T ss_dssp             CC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---C
T ss_pred             ce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---H
Confidence            54 23  45556666666666666543   25566666666666666665 34  556666666666666666532   2


Q ss_pred             cCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcE
Q 002105          369 CDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQM  448 (966)
Q Consensus       369 ~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~  448 (966)
                      ..+++|+.|++++|              +|+.|++++|.+.+.+|  +..+++|+.|++++|.+.+.+|.   ...+|+.
T Consensus       251 ~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~  311 (457)
T 3bz5_A          251 STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITE  311 (457)
T ss_dssp             TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSC
T ss_pred             HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceE
Confidence            23344555555443              24455566666555554  34555666666666655555442   2334444


Q ss_pred             ecCCCCcCCccCCCCcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceec
Q 002105          449 LNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLS  528 (966)
Q Consensus       449 L~Ls~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  528 (966)
                      |++++|            ++|++|++++|++++. +  ++.+++|+.|++++|++++        ++.|..|++++|.++
T Consensus       312 L~l~~~------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~  368 (457)
T 3bz5_A          312 LDLSQN------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFE  368 (457)
T ss_dssp             CCCTTC------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEE
T ss_pred             echhhc------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEE
Confidence            444433            2445555555555542 1  4455555555555555543        133444445555554


Q ss_pred             cccCccCCCCCCCcEEeCCCCcCcccCCc
Q 002105          529 GHIPASLSEMPVLGQLDLSENQLSGKIPQ  557 (966)
Q Consensus       529 ~~~p~~l~~l~~L~~LdLs~N~l~g~~p~  557 (966)
                      |.     +.+..|..+++++|+++|.+|.
T Consensus       369 g~-----~~~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          369 AE-----GQTITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             EE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred             ec-----ceeeecCccccccCcEEEEcCh
Confidence            43     1222334444444444444443

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=1.8e-39  Score=380.98  Aligned_cols=239  Identities=21%  Similarity=0.226  Sum_probs=183.7

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccc-hHHHH--HHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSS-FWPDV--SQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~-~~~e~--~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      ++.+..+|+|+||.||+|+...+|..||+|++.....  ..... ...|.  ..+.+.++|||||++++++.+++.+|||
T Consensus       191 f~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~lylV  270 (689)
T 3v5w_A          191 FSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFI  270 (689)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEE
T ss_pred             eEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEEEE
Confidence            3555678999999999999999999999999864321  11112 22332  2233336899999999999999999999


Q ss_pred             EEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec---
Q 002105          760 YEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT---  833 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~---  833 (966)
                      ||||+||+|.++|+   .+++.....++.||+.||+|||   +.+||||||||+|||+|.+  .++|++|||++...   
T Consensus       271 mEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH---~~gIiHRDLKPeNILld~~--G~vKL~DFGlA~~~~~~  345 (689)
T 3v5w_A          271 LDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEH--GHVRISDLGLACDFSKK  345 (689)
T ss_dssp             ECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTT--SCEEECCCTTCEECSSC
T ss_pred             EecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHeEEeCC--CCEEecccceeeecCCC
Confidence            99999999999996   3899999999999999999999   6699999999999999965  46899999998653   


Q ss_pred             -CCCCcCCcccccccccC-CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc-hhhHHHHHHHhhccCcccccccccccC
Q 002105          834 -DSKSINSSAYVAPETKE-SKDITEKGDIYGFGLILIDLLTGKSPADADFGV-HESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       834 -~~~~~~~~~y~aPE~~~-~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                       ....+||+.|||||++. +..|+.++||||+||++|||+||+.||.+.... ...+....   ...       .+.+..
T Consensus       346 ~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i---~~~-------~~~~p~  415 (689)
T 3v5w_A          346 KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMT---LTM-------AVELPD  415 (689)
T ss_dssp             CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHH---HHC-------CCCCCT
T ss_pred             CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhh---cCC-------CCCCCc
Confidence             23468999999999986 457999999999999999999999999754221 11111111   110       111111


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCC-----HHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPC-----ASDVT  944 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt-----~~~v~  944 (966)
                      ..+   +   ++.+++.+|++.||++|++     ++||.
T Consensus       416 ~~S---~---~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~  448 (689)
T 3v5w_A          416 SFS---P---ELRSLLEGLLQRDVNRRLGCLGRGAQEVK  448 (689)
T ss_dssp             TSC---H---HHHHHHHHHTCSCGGGCTTCSSSTHHHHT
T ss_pred             cCC---H---HHHHHHHHHccCCHhHCCCCCCCCHHHHh
Confidence            222   2   4567788999999999998     56664

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=5.2e-39  Score=356.57  Aligned_cols=260  Identities=23%  Similarity=0.418  Sum_probs=210.5

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .....+|+|++|.||+|+. .++..||||++........+.+.+|+..+.+ ++|||||+++++|.+++..++||||+++
T Consensus        42 ~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~~  119 (321)
T 2qkw_B           42 DHKFLIGHGVFGKVYKGVL-RDGAKVALKRRTPESSQGIEEFETEIETLSF-CRHPHLVSLIGFCDERNEMILIYKYMEN  119 (321)
T ss_dssp             SCCCCSCBCSSSEEEEEEC-TTCCEEEEEECCSCCSSHHHHHHHHHHGGGS-CCCTTBCCEEEECCCTTCCEEEEECCTT
T ss_pred             CccceeecCCCeeEEEEEE-CCCCEEEEEEecccChHHHHHHHHHHHHHHh-CCCCCEeeEEEEEcCCCeEEEEEEcCCC
Confidence            4455679999999999996 6789999998766544445567888877777 6999999999999999999999999999


Q ss_pred             CCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          766 KELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       766 g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      |+|.+++.       .++|..+..++.|+++||+|||.   .+|+||||||+||+++.+.  .++++|||.+....    
T Consensus       120 ~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~ivH~dlkp~Nil~~~~~--~~kl~Dfg~~~~~~~~~~  194 (321)
T 2qkw_B          120 GNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHT---RAIIHRDVKSINILLDENF--VPKITDFGISKKGTELDQ  194 (321)
T ss_dssp             CBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCSTTEEECTTC--CEEECCCTTCEECSSSSC
T ss_pred             CcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcC---CCeecCCCCHHHEEECCCC--CEEEeecccccccccccc
Confidence            99999985       38899999999999999999994   5999999999999998654  57899999876421    


Q ss_pred             ----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc-hhhHHHHHHHhhccCccccccccccc
Q 002105          835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV-HESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                          ....||+.|+|||++.+..++.++|||||||++|||+||+.||...... .....+|.............+++...
T Consensus       195 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (321)
T 2qkw_B          195 THLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLA  274 (321)
T ss_dssp             CCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCT
T ss_pred             cccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhc
Confidence                1234788999999998889999999999999999999999999754332 22233565544444444455666554


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS  954 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~  954 (966)
                      ....  .+...++.+++.+||+.||++|||++||++.|+..++..
T Consensus       275 ~~~~--~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~~  317 (321)
T 2qkw_B          275 DKIR--PESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQ  317 (321)
T ss_dssp             TCSC--HHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred             cccC--HHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhcc
Confidence            4333  456677889999999999999999999999999966543

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=8.1e-39  Score=355.83  Aligned_cols=272  Identities=28%  Similarity=0.526  Sum_probs=218.2

Q ss_pred             ccccHHHHHhhcc-ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeE
Q 002105          672 KSLTIDEIISSTT-EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGV  749 (966)
Q Consensus       672 ~~~~~~~~~~~~~-~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~  749 (966)
                      ..++.+++....+ +.....+|+|++|.||+|+. .+|..||||++...... ....+.+|+..+.+ ++|||||+++++
T Consensus        18 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~   95 (326)
T 3uim_A           18 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRL-ADGTLVAVKRLKEERTQGGELQFQTEVEMISM-AVHRNLLRLRGF   95 (326)
T ss_dssp             EECCTHHHHTTTTSSCSTTEEECCSSSEEEEECC-SSSCCEEEEECCC-----CCCHHHHHHHGGGT-CCCTTBCCCCEE
T ss_pred             ceecHHHHHHHhhccccceeEecCCCcEEEEEEe-cCCCEEEEEEeccccCchHHHHHHHHHHHHHh-ccCCCccceEEE
Confidence            4567777766554 45556689999999999985 67899999998654322 33457788877777 799999999999


Q ss_pred             EecCCeeEEEEEccCCCCHHHHHHc-------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceE
Q 002105          750 CRSEKAAYLVYEYIEGKELSEVLRN-------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL  822 (966)
Q Consensus       750 ~~~~~~~~lv~Ey~~~g~L~~~l~~-------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~  822 (966)
                      |..++..++||||+++|+|.++++.       ++|..+..++.|++.||+|||..+.++|+||||||+||+++.+.  .+
T Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~--~~  173 (326)
T 3uim_A           96 CMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEF--EA  173 (326)
T ss_dssp             ECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTC--CE
T ss_pred             EecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCC--CE
Confidence            9999999999999999999999973       89999999999999999999977677999999999999999654  57


Q ss_pred             EEeccccceecC-------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC---CCchhhHHHHHH
Q 002105          823 RLSVPGLAYCTD-------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD---FGVHESIVEWAR  892 (966)
Q Consensus       823 ~~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~---~~~~~~~~~~~~  892 (966)
                      +++|||.+....       ....||+.|+|||++.+..++.++|||||||++|||+||+.||+..   ........+|..
T Consensus       174 kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~  253 (326)
T 3uim_A          174 VVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVK  253 (326)
T ss_dssp             EECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHT
T ss_pred             EeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHH
Confidence            899999986432       2235899999999998888999999999999999999999998621   111223446666


Q ss_pred             HhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          893 YCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       893 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      ............++.......  .++..++.+++.+|++.||++|||++||+++|+.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~  308 (326)
T 3uim_A          254 GLLKEKKLEALVDVDLQGNYK--DEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG  308 (326)
T ss_dssp             TTTSSCCSTTSSCTTCTTSCC--HHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHT
T ss_pred             HHhhchhhhhhcChhhccccC--HHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcC
Confidence            555555555555555544433  5667788999999999999999999999999987

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.8e-37  Score=359.70  Aligned_cols=344  Identities=26%  Similarity=0.336  Sum_probs=165.4

Q ss_pred             CCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccC
Q 002105          110 NSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLAS  189 (966)
Q Consensus       110 ~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  189 (966)
                      ++|+.|++++|.+.....+..+++|++|||++|.+++..|  +.++++|++|++++|.+.+..|  ++++++|++|++++
T Consensus        46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~  121 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN  121 (466)
T ss_dssp             HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             ccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCC
Confidence            4566666666666543234555666666666666654332  5566666666666665554433  55555555555555


Q ss_pred             CCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCC
Q 002105          190 NQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIP  269 (966)
Q Consensus       190 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  269 (966)
                      |.+++..+  +.++++|++|++++|.+++ ++ .++.+++|++|+++ |.+.+..  .+.++++|++|++++|.+++.  
T Consensus       122 n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--  192 (466)
T 1o6v_A          122 NQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--  192 (466)
T ss_dssp             SCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--
T ss_pred             CCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--
Confidence            55554322  4555555555555555543 22 24455555555553 2232211  144445555555555544432  


Q ss_pred             hhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCC
Q 002105          270 KSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNN  349 (966)
Q Consensus       270 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~  349 (966)
                      ..+..+++|++|++++|.++                        +..|  ++.+++|+.|++++|.+++.  ..+..+++
T Consensus       193 ~~l~~l~~L~~L~l~~n~l~------------------------~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~  244 (466)
T 1o6v_A          193 SVLAKLTNLESLIATNNQIS------------------------DITP--LGILTNLDELSLNGNQLKDI--GTLASLTN  244 (466)
T ss_dssp             GGGGGCTTCSEEECCSSCCC------------------------CCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred             hhhccCCCCCEEEecCCccc------------------------cccc--ccccCCCCEEECCCCCcccc--hhhhcCCC
Confidence            22444444444444444444                        3322  33344444444444444431  23444445


Q ss_pred             CcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccC
Q 002105          350 LTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISG  429 (966)
Q Consensus       350 L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~  429 (966)
                      |+.|++++|.+++..|  +..+++|+.|++++|.+++..+  +..+++|+.|++++|++.+..+  +..+++|+.|++++
T Consensus       245 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~  318 (466)
T 1o6v_A          245 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF  318 (466)
T ss_dssp             CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCS
T ss_pred             CCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcC
Confidence            5555555555443322  3333444444444444443222  4444555555555555544333  44455555555555


Q ss_pred             CCCCCccCcchhccCCCcEecCCCCcCCccCCCCcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChh
Q 002105          430 NDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPE  509 (966)
Q Consensus       430 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  509 (966)
                      |++++..|  +..+++|+.|++++|++++.                         ..+..+++|+.|++++|++++..| 
T Consensus       319 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-------------------------~~l~~l~~L~~L~l~~n~l~~~~~-  370 (466)
T 1o6v_A          319 NNISDISP--VSSLTKLQRLFFYNNKVSDV-------------------------SSLANLTNINWLSAGHNQISDLTP-  370 (466)
T ss_dssp             SCCSCCGG--GGGCTTCCEEECCSSCCCCC-------------------------GGGTTCTTCCEEECCSSCCCBCGG-
T ss_pred             CcCCCchh--hccCccCCEeECCCCccCCc-------------------------hhhccCCCCCEEeCCCCccCccch-
Confidence            55554433  33444445554444444432                         234444455555555555544444 


Q ss_pred             hccccccccccccCCceecc
Q 002105          510 ELSSCKKLVSLDLSNNQLSG  529 (966)
Q Consensus       510 ~~~~l~~L~~L~Ls~N~l~~  529 (966)
                       +..+++|+.|++++|.+++
T Consensus       371 -~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          371 -LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             -GTTCTTCCEEECCCEEEEC
T ss_pred             -hhcCCCCCEEeccCCcccC
Confidence             4445555555555555544

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=4.9e-38  Score=346.88  Aligned_cols=238  Identities=21%  Similarity=0.396  Sum_probs=194.6

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|+|++|.||+|++..++..||+|++........+.|.+|+..+.+ ++|||||++++++.+++..++||||+++|
T Consensus        14 ~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~~~lv~e~~~~~   92 (310)
T 3s95_A           14 HGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRC-LEHPNVLKFIGVLYKDKRLNFITEYIKGG   92 (310)
T ss_dssp             EEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTT-CCCTTBCCEEEEEEETTEEEEEEECCTTC
T ss_pred             ccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHh-CCCcCcccEEEEEecCCeeEEEEEecCCC
Confidence            34457899999999999988999999999866555556678888888877 69999999999999999999999999999


Q ss_pred             CHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-------
Q 002105          767 ELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-------  835 (966)
Q Consensus       767 ~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-------  835 (966)
                      +|.++++.    ++|.++..++.|+++||+|||   +.+|+||||||+||+++.+.  .++++|||.+.....       
T Consensus        93 ~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nil~~~~~--~~kl~Dfg~~~~~~~~~~~~~~  167 (310)
T 3s95_A           93 TLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENK--NVVVADFGLARLMVDEKTQPEG  167 (310)
T ss_dssp             BHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEECTTS--CEEECCCTTCEECC--------
T ss_pred             cHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCcCeEEECCCC--CEEEeecccceecccccccccc
Confidence            99999964    899999999999999999999   45899999999999999654  478999998854211       


Q ss_pred             -------------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchh----hHHHHHHHhhccC
Q 002105          836 -------------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHE----SIVEWARYCYSDC  898 (966)
Q Consensus       836 -------------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~----~~~~~~~~~~~~~  898 (966)
                                   ...||+.|+|||++.+..++.++|||||||++|||++|..|+........    ......       
T Consensus       168 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~-------  240 (310)
T 3s95_A          168 LRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFL-------  240 (310)
T ss_dssp             ------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHH-------
T ss_pred             cccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccc-------
Confidence                         34689999999999999999999999999999999999999865322111    111111       


Q ss_pred             cccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          899 HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       899 ~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                            ++.....++      .++.+++.+||+.||++|||++|+++.|++
T Consensus       241 ------~~~~~~~~~------~~l~~li~~~l~~dP~~Rps~~~l~~~L~~  279 (310)
T 3s95_A          241 ------DRYCPPNCP------PSFFPITVRCCDLDPEKRPSFVKLEHWLET  279 (310)
T ss_dssp             ------HHTCCTTCC------TTHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             ------cccCCCCCC------HHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence                  111111122      146678889999999999999999999998

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=1.5e-37  Score=340.65  Aligned_cols=239  Identities=17%  Similarity=0.271  Sum_probs=190.7

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .....+|+|++|.||+|+...++..||||++........+.+.+|+..+.+ ++|||||++++++..++..++||||+++
T Consensus        23 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~~~lv~e~~~~  101 (297)
T 3fxz_A           23 TRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRE-NKNPNIVNYLDSYLVGDELWVVMEYLAG  101 (297)
T ss_dssp             CCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHH-CCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred             eeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhc-CCCCCCCeEeEEEEECCEEEEEEECCCC
Confidence            445567999999999999989999999999876554455567778777777 7999999999999999999999999999


Q ss_pred             CCHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CCC
Q 002105          766 KELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SKS  837 (966)
Q Consensus       766 g~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~~  837 (966)
                      |+|.++++.  +++.....++.|++.||+|||.   .+|+||||||+||+++.+.  .++++|||++....      ...
T Consensus       102 ~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~Nil~~~~~--~~kl~Dfg~~~~~~~~~~~~~~~  176 (297)
T 3fxz_A          102 GSLTDVVTETCMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDG--SVKLTDFGFCAQITPEQSKRSTM  176 (297)
T ss_dssp             CBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTC--CEEECCCTTCEECCSTTCCBCCC
T ss_pred             CCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEECCCC--CEEEeeCCCceecCCcccccCCc
Confidence            999999974  8999999999999999999994   5899999999999998664  57899999875422      234


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      .||+.|+|||++.+..++.++|||||||++|||+||+.||..... ..........    ... ....   ....+    
T Consensus       177 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~~~~~~~~----~~~-~~~~---~~~~~----  243 (297)
T 3fxz_A          177 VGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP-LRALYLIATN----GTP-ELQN---PEKLS----  243 (297)
T ss_dssp             CSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-HHHHHHHHHH----CSC-CCSC---GGGSC----
T ss_pred             cCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHhC----CCC-CCCC---ccccC----
Confidence            689999999999999999999999999999999999999975321 1111111111    000 0000   11111    


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                        .++.+++.+|++.||++|||++|+++
T Consensus       244 --~~~~~li~~~l~~dp~~Rps~~ell~  269 (297)
T 3fxz_A          244 --AIFRDFLNRCLEMDVEKRGSAKELLQ  269 (297)
T ss_dssp             --HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             --HHHHHHHHHHccCChhHCcCHHHHhh
Confidence              24567788999999999999999976

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=2.2e-37  Score=343.10  Aligned_cols=254  Identities=16%  Similarity=0.257  Sum_probs=198.6

Q ss_pred             ccccHHHHHhhcc-----------ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCC
Q 002105          672 KSLTIDEIISSTT-----------EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMH  740 (966)
Q Consensus       672 ~~~~~~~~~~~~~-----------~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H  740 (966)
                      ..++.+++..++.           ......+|+|++|.||+|+...+|..||||++........+.+.+|+..+.+ ++|
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~h  101 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRD-YQH  101 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTT-CCC
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHh-CCC
Confidence            4567777766553           1334467999999999999977999999999876555455567888888877 699


Q ss_pred             CceeEEeeEEecCCeeEEEEEccCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC
Q 002105          741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD  818 (966)
Q Consensus       741 ~niv~l~g~~~~~~~~~lv~Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~  818 (966)
                      ||||+++++|..++..++||||+++|+|.++++  .++|..+..++.|+++||+|||.   .+|+||||||+||+++.+.
T Consensus       102 ~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~  178 (321)
T 2c30_A          102 FNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHA---QGVIHRDIKSDSILLTLDG  178 (321)
T ss_dssp             TTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTC
T ss_pred             CCcceEEEEEEECCEEEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCC
Confidence            999999999999999999999999999999997  48999999999999999999994   5899999999999999654


Q ss_pred             CceEEEeccccceecC------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHH
Q 002105          819 EPHLRLSVPGLAYCTD------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWAR  892 (966)
Q Consensus       819 ~~~~~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~  892 (966)
                        .++++|||++....      ....||+.|+|||++.+..++.++|||||||++|||+||+.||....  .........
T Consensus       179 --~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~--~~~~~~~~~  254 (321)
T 2c30_A          179 --RVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDS--PVQAMKRLR  254 (321)
T ss_dssp             --CEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC--HHHHHHHHH
T ss_pred             --cEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHh
Confidence              57899999875422      23478999999999999999999999999999999999999987532  111112111


Q ss_pred             HhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          893 YCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       893 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      .   .      ..|.... ..   ....++.+++.+|++.||++|||++||++.
T Consensus       255 ~---~------~~~~~~~-~~---~~~~~l~~li~~~l~~dp~~Rps~~ell~h  295 (321)
T 2c30_A          255 D---S------PPPKLKN-SH---KVSPVLRDFLERMLVRDPQERATAQELLDH  295 (321)
T ss_dssp             H---S------SCCCCTT-GG---GSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             c---C------CCCCcCc-cc---cCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            1   1      1111100 00   011245677889999999999999999863

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2e-36  Score=353.59  Aligned_cols=347  Identities=27%  Similarity=0.384  Sum_probs=270.9

Q ss_pred             cCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEE
Q 002105           82 FHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVL  161 (966)
Q Consensus        82 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  161 (966)
                      ..+++|+.|++++|.+. .+|.  +..+++|++|+|++|.+++..+++.+++|++|++++|.+++..+  +..+++|++|
T Consensus        43 ~~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             hHhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            34678999999999998 5774  56679999999999999987778999999999999999997655  9999999999


Q ss_pred             EccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeeccccc
Q 002105          162 DLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLT  241 (966)
Q Consensus       162 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  241 (966)
                      ++++|.+.+..+  +.++++|++|++++|.+.+ ++ .++.+++|++|+++ |.+.+.  ..+.++++|++|++++|.++
T Consensus       118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC
Confidence            999999987544  8999999999999999886 33 58999999999997 555543  23899999999999999998


Q ss_pred             ccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCC
Q 002105          242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLA  321 (966)
Q Consensus       242 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~  321 (966)
                      +.  ..+.++++|++|++++|++++..|  +..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+  +.
T Consensus       191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~  262 (466)
T 1o6v_A          191 DI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS  262 (466)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             CC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence            53  458899999999999999987655  78899999999999999864  467888999999999999887655  78


Q ss_pred             CCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCcee
Q 002105          322 SMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRV  401 (966)
Q Consensus       322 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L  401 (966)
                      .+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|++++..|  +..+++|++|
T Consensus       263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  336 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL  336 (466)
T ss_dssp             TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred             cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence            88899999999998886543  7778888888888888876443  5556666666666666665544  4556666666


Q ss_pred             eccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCc
Q 002105          402 RLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSG  458 (966)
Q Consensus       402 ~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  458 (966)
                      ++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|.+++
T Consensus       337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            6666666554  245555555555555555555444  4445555555555555443

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=4.3e-37  Score=338.75  Aligned_cols=246  Identities=21%  Similarity=0.340  Sum_probs=187.5

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .....+|+|++|.||+|+.  .|..||||++.....  ...+++.+|+..+.+ ++|||||++++++..++..++||||+
T Consensus        40 ~i~~~lG~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~~~lv~e~~  116 (309)
T 3p86_A           40 NIKEKIGAGSFGTVHRAEW--HGSDVAVKILMEQDFHAERVNEFLREVAIMKR-LRHPNIVLFMGAVTQPPNLSIVTEYL  116 (309)
T ss_dssp             EEEEEEEECSSEEEEEEEE--TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHH-CCCTTBCCEEEEECSTTCCEEEEECC
T ss_pred             eeeeEeecCCCeEEEEEEE--CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHh-CCCCCEeeEEEEEEECCceEEEEecC
Confidence            4455679999999999975  688999999865432  223457788888877 69999999999999999999999999


Q ss_pred             CCCCHHHHHHc------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----
Q 002105          764 EGKELSEVLRN------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----  833 (966)
Q Consensus       764 ~~g~L~~~l~~------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----  833 (966)
                      ++|+|.++++.      +++..+..++.|+++||+|||.. .++|+||||||+||+++.+.  .++++|||++...    
T Consensus       117 ~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~~~ivH~Dikp~NIll~~~~--~~kL~Dfg~a~~~~~~~  193 (309)
T 3p86_A          117 SRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR-NPPIVHRNLKSPNLLVDKKY--TVKVCDFGLSRLKASTF  193 (309)
T ss_dssp             TTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS-SSCCCCTTCCGGGEEECTTC--CEEECCCC---------
T ss_pred             CCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC-CCCEECCCCChhhEEEeCCC--cEEECCCCCCccccccc
Confidence            99999999963      89999999999999999999944 22399999999999999654  5788999987532    


Q ss_pred             --CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCC
Q 002105          834 --DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH  911 (966)
Q Consensus       834 --~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  911 (966)
                        .....||+.|+|||++.+..++.++|||||||++|||+||+.||....  .......+..  ....      +.+...
T Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~--~~~~~~~~~~--~~~~------~~~~~~  263 (309)
T 3p86_A          194 LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLN--PAQVVAAVGF--KCKR------LEIPRN  263 (309)
T ss_dssp             --------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSC--HHHHHHHHHH--SCCC------CCCCTT
T ss_pred             cccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHh--cCCC------CCCCcc
Confidence              223468999999999999999999999999999999999999997532  1111121111  1100      111112


Q ss_pred             CcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          912 VSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       912 ~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      .+      .++.+++.+||+.||++|||++||++.|+..++.
T Consensus       264 ~~------~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~  299 (309)
T 3p86_A          264 LN------PQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKS  299 (309)
T ss_dssp             SC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-
T ss_pred             CC------HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            22      2466788899999999999999999999996654

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=1.8e-37  Score=344.16  Aligned_cols=255  Identities=20%  Similarity=0.266  Sum_probs=189.7

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCC----eeEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK----AAYLVY  760 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~----~~~lv~  760 (966)
                      +.....+|+|+||.||+|+.  .+..||||++.... .....+..|+..+.+ ++|||||++++++..+.    ..++||
T Consensus        26 y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~-~~~~~~~~E~~~l~~-l~hpniv~~~~~~~~~~~~~~~~~lv~  101 (322)
T 3soc_A           26 LQLLEVKARGRFGCVWKAQL--LNEYVAVKIFPIQD-KQSWQNEYEVYSLPG-MKHENILQFIGAEKRGTSVDVDLWLIT  101 (322)
T ss_dssp             EEEEEEEECSTTCEEEEEEE--TTEEEEEEEECGGG-HHHHHHHHHHHTSTT-CCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             chhhheecccCceEEEEEEE--CCCEEEEEEeecCc-hHHHHHHHHHHHHhc-CCCCCchhhcceeccCCCCCceEEEEE
Confidence            34455679999999999986  47899999985432 222334556666666 69999999999998744    479999


Q ss_pred             EccCCCCHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhc-------CCCCeEeecCCCCcEEEcCCCCceEEEeccccce
Q 002105          761 EYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFH-------CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY  831 (966)
Q Consensus       761 Ey~~~g~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~-------~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~  831 (966)
                      ||+++|+|.++++.  ++|..+..++.|+++||+|||..       +.++|+||||||+||+++.+.  .++++|||.+.
T Consensus       102 e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~--~~kL~DFg~a~  179 (322)
T 3soc_A          102 AFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNL--TACIADFGLAL  179 (322)
T ss_dssp             ECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTC--CEEECCCTTCE
T ss_pred             ecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCC--eEEEccCCccc
Confidence            99999999999974  89999999999999999999943       123999999999999998654  57899999985


Q ss_pred             ecC--------CCCcCCcccccccccCC-----CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchh-----------hH
Q 002105          832 CTD--------SKSINSSAYVAPETKES-----KDITEKGDIYGFGLILIDLLTGKSPADADFGVHE-----------SI  887 (966)
Q Consensus       832 ~~~--------~~~~~~~~y~aPE~~~~-----~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~-----------~~  887 (966)
                      ...        ....||+.|+|||++.+     ..++.++|||||||++|||+||+.||.+......           ..
T Consensus       180 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~  259 (322)
T 3soc_A          180 KFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSL  259 (322)
T ss_dssp             EECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCH
T ss_pred             ccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCch
Confidence            421        22468999999999876     3566789999999999999999999975432110           11


Q ss_pred             HHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 002105          888 VEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCF  951 (966)
Q Consensus       888 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~  951 (966)
                      .++........     ..|.+..... ......++.+++.+||+.||++|||++||+++|+++.
T Consensus       260 ~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~  317 (322)
T 3soc_A          260 EDMQEVVVHKK-----KRPVLRDYWQ-KHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQ  317 (322)
T ss_dssp             HHHHHHHTTSC-----CCCCCCGGGG-SSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhccc-----CCCCcccccc-ccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            11111111111     1122211111 1234556888999999999999999999999999843

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=1.4e-36  Score=334.81  Aligned_cols=265  Identities=25%  Similarity=0.431  Sum_probs=205.1

Q ss_pred             ccccHHHHHhhcccccc-------ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc----cccchHHHHHHHHhhcCC
Q 002105          672 KSLTIDEIISSTTEENL-------TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI----TTSSFWPDVSQFGKLIMH  740 (966)
Q Consensus       672 ~~~~~~~~~~~~~~~~~-------~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~----~~~~~~~e~~~~~~~~~H  740 (966)
                      ..|+++++..++.....       ..+|+|++|.||+|+.  ++..||||++......    ..+.+.+|+..+.+ ++|
T Consensus        13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~-l~h   89 (307)
T 2nru_A           13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAK-CQH   89 (307)
T ss_dssp             EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHH-CCC
T ss_pred             CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHh-cCC
Confidence            56788888887754221       3478999999999985  6889999998654322    23456778877777 699


Q ss_pred             CceeEEeeEEecCCeeEEEEEccCCCCHHHHHH------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEE
Q 002105          741 PNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV  814 (966)
Q Consensus       741 ~niv~l~g~~~~~~~~~lv~Ey~~~g~L~~~l~------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill  814 (966)
                      ||||++++++.+++..++||||+++|+|.+++.      .++|..+..++.|++.||+|||   ..+|+||||||+||++
T Consensus        90 ~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nili  166 (307)
T 2nru_A           90 ENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILL  166 (307)
T ss_dssp             TTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEE
T ss_pred             CCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecCCCCHHHEEE
Confidence            999999999999999999999999999999996      2899999999999999999999   4589999999999999


Q ss_pred             cCCCCceEEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhh
Q 002105          815 DGKDEPHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHES  886 (966)
Q Consensus       815 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~  886 (966)
                      +.+.  .++++|||.+....        ....||+.|+|||...+ .++.++|||||||++|||+||+.||...... ..
T Consensus       167 ~~~~--~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-~~  242 (307)
T 2nru_A          167 DEAF--TAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREP-QL  242 (307)
T ss_dssp             CTTC--CEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSS-SB
T ss_pred             cCCC--cEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcch-HH
Confidence            8654  57899999876432        23468999999998865 5899999999999999999999999754322 11


Q ss_pred             HHHHHHHhhc-cCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          887 IVEWARYCYS-DCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       887 ~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      ...+...... ......++++.+...   ......++.+++.+||+.||.+|||++||++.|++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~  303 (307)
T 2nru_A          243 LLDIKEEIEDEEKTIEDYIDKKMNDA---DSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQE  303 (307)
T ss_dssp             TTHHHHHHHTTSCCHHHHSCSSCSCC---CHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhcccccccc---chHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHH
Confidence            1122222111 122223344433221   13455678889999999999999999999999998

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=1.2e-36  Score=343.76  Aligned_cols=245  Identities=19%  Similarity=0.316  Sum_probs=191.5

Q ss_pred             cccccCCCCCccEEEEEEEe-------cCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeE
Q 002105          686 ENLTSRGKKGVSSSYKVRSL-------ANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAY  757 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~-------~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~  757 (966)
                      .....+|+|+||.||+|+..       .++..||||++..... ...+.+.+|+..+.++.+|||||+++++|..++..|
T Consensus        84 ~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~  163 (370)
T 2psq_A           84 TLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLY  163 (370)
T ss_dssp             EEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSSSCE
T ss_pred             EeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCCCEE
Confidence            33456799999999999875       2445799998864322 223457888888877338999999999999999999


Q ss_pred             EEEEccCCCCHHHHHHc-------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC
Q 002105          758 LVYEYIEGKELSEVLRN-------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD  818 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~~-------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~  818 (966)
                      +||||+++|+|.++++.                   ++|.++..++.||++||+|||   ..+|+||||||+|||++.++
T Consensus       164 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~  240 (370)
T 2psq_A          164 VIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENN  240 (370)
T ss_dssp             EEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTC
T ss_pred             EEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchhhEEECCCC
Confidence            99999999999999963                   689999999999999999999   45899999999999998654


Q ss_pred             CceEEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHH
Q 002105          819 EPHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVE  889 (966)
Q Consensus       819 ~~~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~  889 (966)
                        .++++|||++....        ....+|+.|+|||++.+..++.++|||||||++|||+| |+.||.+..  ...+..
T Consensus       241 --~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~--~~~~~~  316 (370)
T 2psq_A          241 --VMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP--VEELFK  316 (370)
T ss_dssp             --CEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHH
T ss_pred             --CEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCC--HHHHHH
Confidence              57899999986422        22346788999999999999999999999999999999 999987532  222222


Q ss_pred             HHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          890 WARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       890 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      ....   ...      +.....++      .++.+++.+||+.||++|||+.|+++.|++++.
T Consensus       317 ~~~~---~~~------~~~~~~~~------~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~  364 (370)
T 2psq_A          317 LLKE---GHR------MDKPANCT------NELYMMMRDCWHAVPSQRPTFKQLVEDLDRILT  364 (370)
T ss_dssp             HHHT---TCC------CCCCTTSC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHhc---CCC------CCCCCCCC------HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            2211   110      11111122      256678889999999999999999999998654

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=6.1e-37  Score=340.21  Aligned_cols=247  Identities=21%  Similarity=0.306  Sum_probs=192.9

Q ss_pred             cccccCCCCCccEEEEEEEecCCc---EEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDM---QFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~---~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      .....+|+|++|.||+|+...++.   .||||++.... ....+.|.+|+..+.+ ++|||||++++++.+++..|+|||
T Consensus        52 ~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e  130 (325)
T 3kul_A           52 HIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQ-FDHPNIIRLEGVVTRGRLAMIVTE  130 (325)
T ss_dssp             EEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTT-CCCTTBCCEEEEECGGGCCEEEEE
T ss_pred             EEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHh-CCCCCCCcEEEEEEeCCccEEEee
Confidence            444567999999999999875544   59999986542 2234567888888877 699999999999999999999999


Q ss_pred             ccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---
Q 002105          762 YIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       762 y~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---  834 (966)
                      |+++|+|.++++    .+++..+..++.|++.||+|||   ..+|+||||||+||+++.+.  .++++|||++....   
T Consensus       131 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~--~~kl~Dfg~a~~~~~~~  205 (325)
T 3kul_A          131 YMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSNL--VCKVSDFGLSRVLEDDP  205 (325)
T ss_dssp             CCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTC--CEEECCCSSCEECC---
T ss_pred             CCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEECCCC--CEEECCCCcccccccCc
Confidence            999999999995    4899999999999999999999   45899999999999998654  57899999886432   


Q ss_pred             ------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCccccccccc
Q 002105          835 ------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF  907 (966)
Q Consensus       835 ------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  907 (966)
                            ....+|+.|+|||++.+..++.++|||||||++|||+| |+.||....  ...+.+.+.   ....      +.
T Consensus       206 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~--~~~~~~~~~---~~~~------~~  274 (325)
T 3kul_A          206 DAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMT--NRDVISSVE---EGYR------LP  274 (325)
T ss_dssp             -CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSC--HHHHHHHHH---TTCC------CC
T ss_pred             cceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCC--HHHHHHHHH---cCCC------CC
Confidence                  12245678999999998899999999999999999999 999986532  111112111   1111      00


Q ss_pred             ccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 002105          908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISS  955 (966)
Q Consensus       908 ~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~~  955 (966)
                      ....++      .++.+++.+||+.||++|||++||+++|+++++...
T Consensus       275 ~~~~~~------~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~  316 (325)
T 3kul_A          275 APMGCP------HALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPE  316 (325)
T ss_dssp             CCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC
T ss_pred             CCCCcC------HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCcc
Confidence            111122      256678889999999999999999999999666543

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=1.2e-36  Score=341.66  Aligned_cols=242  Identities=21%  Similarity=0.309  Sum_probs=191.0

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc------ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT------TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~------~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      .....+|+|+||.||+++...+|..||+|.+.......      .+.+.+|+..+.+ ++|||||++++++.+++..|+|
T Consensus        15 ~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~-l~hpnIv~l~~~~~~~~~~~lv   93 (361)
T 2yab_A           15 DIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQ-VLHPNIITLHDVYENRTDVVLI   93 (361)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTT-CCCTTBCCEEEEEECSSEEEEE
T ss_pred             EEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHh-CCCcCCCcEEEEEEeCCEEEEE
Confidence            34456789999999999998899999999987543321      2356788877777 6999999999999999999999


Q ss_pred             EEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC--ceEEEeccccceecC
Q 002105          760 YEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE--PHLRLSVPGLAYCTD  834 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~--~~~~~~~~~~~~~~~  834 (966)
                      |||+++|+|.+++.   .+++.....++.||+.||+|||.   .+|+||||||+||+++.+..  ..++++|||++....
T Consensus        94 ~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~  170 (361)
T 2yab_A           94 LELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE  170 (361)
T ss_dssp             EECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECC
T ss_pred             EEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcC
Confidence            99999999999996   38999999999999999999994   59999999999999986553  368999999986532


Q ss_pred             -----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccccc
Q 002105          835 -----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       835 -----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                           ....||+.|+|||++.+..++.++|||||||++|||++|+.||.+... .+.. ..+.   . ... . .++...
T Consensus       171 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~-~~~~-~~i~---~-~~~-~-~~~~~~  242 (361)
T 2yab_A          171 DGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK-QETL-ANIT---A-VSY-D-FDEEFF  242 (361)
T ss_dssp             TTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH-HHHH-HHHH---T-TCC-C-CCHHHH
T ss_pred             CCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH-HHHH-HHHH---h-cCC-C-CCchhc
Confidence                 235689999999999999999999999999999999999999976421 1111 1111   1 000 0 111111


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ...+      .++.+++.+|++.||++|||+.|+++
T Consensus       243 ~~~s------~~~~~li~~~L~~dP~~R~t~~e~l~  272 (361)
T 2yab_A          243 SQTS------ELAKDFIRKLLVKETRKRLTIQEALR  272 (361)
T ss_dssp             TTSC------HHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             cCCC------HHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            1122      24567788999999999999999874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=349.10  Aligned_cols=303  Identities=20%  Similarity=0.187  Sum_probs=198.0

Q ss_pred             CCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEc
Q 002105          132 SRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYL  211 (966)
Q Consensus       132 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  211 (966)
                      .+|++|||++|++++..|..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            34555555555555555556666666666666666666555666666666666666666666544445566666666666


Q ss_pred             cCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCccc
Q 002105          212 GYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGE  291 (966)
Q Consensus       212 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  291 (966)
                      ++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|++++..+..+.++++|+.|++++|.+.+.
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            66666666666666666677777777666666666666777777777777776655555666677777777777777666


Q ss_pred             CchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCC
Q 002105          292 IPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDS  371 (966)
Q Consensus       292 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~  371 (966)
                      .+..+..+++|+.|++++|.+.+.+|.......+|+.|++++|.+++..+..+..+++|+.|+|++|.+++..+..|..+
T Consensus       192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (477)
T 2id5_A          192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL  271 (477)
T ss_dssp             CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred             ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence            66666666777777777666666666555555577777777777764433456667777777777777776666666666


Q ss_pred             CCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCC
Q 002105          372 GSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSG  434 (966)
Q Consensus       372 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~  434 (966)
                      ++|+.|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|.+..
T Consensus       272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence            666666666666666666666666677777777777666666666666666666666666654

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=4.6e-37  Score=347.07  Aligned_cols=247  Identities=19%  Similarity=0.299  Sum_probs=192.7

Q ss_pred             cccccCCCCCccEEEEEEE-----ecCCcEEEEEEEecc-CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRS-----LANDMQFVVKKIIDV-NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~-----~~~~~~vavk~~~~~-~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      .....+|+|+||.||+|+.     ..++..||||++... .......+.+|+..+.+ ++|||||++++++..++..++|
T Consensus        74 ~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~hpnIv~~~~~~~~~~~~~lv  152 (367)
T 3l9p_A           74 TLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISK-FNHQNIVRCIGVSLQSLPRFIL  152 (367)
T ss_dssp             EEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHH-CCCTTBCCEEEEECSSSSCEEE
T ss_pred             EEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHh-CCCCCCCeEEEEEecCCCCEEE
Confidence            4455689999999999994     456778999998543 22233457788887777 6999999999999999999999


Q ss_pred             EEccCCCCHHHHHHc----------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC-CceEEEeccc
Q 002105          760 YEYIEGKELSEVLRN----------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPG  828 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~----------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~-~~~~~~~~~~  828 (966)
                      ||||++|+|.++++.          +++.++..++.||++||+|||   +.+|+||||||+|||++.++ ...++++|||
T Consensus       153 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG  229 (367)
T 3l9p_A          153 LELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFG  229 (367)
T ss_dssp             EECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECCCH
T ss_pred             EEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEEecCCCCceEEECCCc
Confidence            999999999999963          889999999999999999999   45899999999999998543 3457899999


Q ss_pred             ccee--------cCCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCc
Q 002105          829 LAYC--------TDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCH  899 (966)
Q Consensus       829 ~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~  899 (966)
                      ++..        ......+|+.|+|||++.+..++.++|||||||++|||+| |+.||....  ...+.+.+.   ....
T Consensus       230 ~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~--~~~~~~~i~---~~~~  304 (367)
T 3l9p_A          230 MARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKS--NQEVLEFVT---SGGR  304 (367)
T ss_dssp             HHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--HHHHHHHHH---TTCC
T ss_pred             cccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHH---cCCC
Confidence            8853        1122457889999999988899999999999999999998 999987542  222222221   1111


Q ss_pred             ccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          900 LDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       900 ~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      .      ......+      .++.+++.+||+.||++|||+.||++.|+.+...
T Consensus       305 ~------~~~~~~~------~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~  346 (367)
T 3l9p_A          305 M------DPPKNCP------GPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD  346 (367)
T ss_dssp             C------CCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             C------CCCccCC------HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence            0      0111121      2466788899999999999999999999985543

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=1.9e-37  Score=338.48  Aligned_cols=251  Identities=20%  Similarity=0.336  Sum_probs=189.7

Q ss_pred             ccccCCCCCccEEEEEEEecCC-------cEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLAND-------MQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~-------~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      ....+|+|++|.||+|+...++       ..||+|++........+.+.+|+..+.+ ++|||||++++++..++..++|
T Consensus        12 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv   90 (289)
T 4fvq_A           12 FNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSK-LSHKHLVLNYGVCVCGDENILV   90 (289)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHT-SCCTTBCCEEEEECCTTCCEEE
T ss_pred             eeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHh-CCCCCEeEEEEEEEeCCCCEEE
Confidence            3445789999999999987766       4699998866554555668888888877 6999999999999999999999


Q ss_pred             EEccCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCc------eEEEecccc
Q 002105          760 YEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEP------HLRLSVPGL  829 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~------~~~~~~~~~  829 (966)
                      |||+++|+|.++++.    +++..+..++.|++.||+|||   +.+|+||||||+||+++.+...      .++++|||.
T Consensus        91 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~  167 (289)
T 4fvq_A           91 QEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLE---ENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGI  167 (289)
T ss_dssp             EECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCS
T ss_pred             EECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcCcceEEEecCCcccccccceeeeccCcc
Confidence            999999999999963    899999999999999999999   4589999999999999876542      278999998


Q ss_pred             ceecCC--CCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccc
Q 002105          830 AYCTDS--KSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDP  906 (966)
Q Consensus       830 ~~~~~~--~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  906 (966)
                      +.....  ...+|+.|+|||++.+ ..++.++|||||||++|||+||..|+.......... ....   ....    .. 
T Consensus       168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~-~~~~---~~~~----~~-  238 (289)
T 4fvq_A          168 SITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKL-QFYE---DRHQ----LP-  238 (289)
T ss_dssp             CTTTSCHHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHH-HHHH---TTCC----CC-
T ss_pred             cccccCccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHH-HHhh---ccCC----CC-
Confidence            754322  2347889999999887 778999999999999999999665543322211111 1111   1100    11 


Q ss_pred             cccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCCcCCC
Q 002105          907 FIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISSCVSG  959 (966)
Q Consensus       907 ~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~~~~~~  959 (966)
                         ...+      .++.+++.+||+.||++|||++|+++.|++++.+...+.+
T Consensus       239 ---~~~~------~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~~~~~~  282 (289)
T 4fvq_A          239 ---APKA------AELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDLVPRG  282 (289)
T ss_dssp             ---CCSS------CTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC--------
T ss_pred             ---CCCC------HHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCCCCCC
Confidence               1111      1356678899999999999999999999996665444333

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=343.67  Aligned_cols=239  Identities=20%  Similarity=0.251  Sum_probs=187.1

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCH
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL  768 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L  768 (966)
                      ..+|+|++|.||+|+...+|..||+|++........+.+.+|+..+.+ ++|||||+++++|.+++..++||||+++|+|
T Consensus        95 ~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L  173 (373)
T 2x4f_A           95 EILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQ-LDHANLIQLYDAFESKNDIVLVMEYVDGGEL  173 (373)
T ss_dssp             EECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTT-CCCTTBCCEEEEEECSSEEEEEEECCTTCEE
T ss_pred             eEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHh-CCCCCCCeEEEEEEECCEEEEEEeCCCCCcH
Confidence            457999999999999988999999999876544455678888888877 6999999999999999999999999999999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----CCCcC
Q 002105          769 SEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SKSIN  839 (966)
Q Consensus       769 ~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----~~~~~  839 (966)
                      .+++.    .+++..+..++.||++||+|||   +.+|+||||||+|||++.+....++++|||++....     ....|
T Consensus       174 ~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~g  250 (373)
T 2x4f_A          174 FDRIIDESYNLTELDTILFMKQICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFG  250 (373)
T ss_dssp             HHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBCCCCCS
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccccccccC
Confidence            99885    4899999999999999999999   458999999999999965455678999999986532     23468


Q ss_pred             CcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHH
Q 002105          840 SSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEI  919 (966)
Q Consensus       840 ~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  919 (966)
                      |+.|+|||++.+..++.++|||||||++|||+||+.||.+... .+.+.......+.       ..+......+      
T Consensus       251 t~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~-~~~~~~i~~~~~~-------~~~~~~~~~~------  316 (373)
T 2x4f_A          251 TPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDND-AETLNNILACRWD-------LEDEEFQDIS------  316 (373)
T ss_dssp             SCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSH-HHHHHHHHHTCCC-------SCSGGGTTSC------
T ss_pred             CCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHhccCC-------CChhhhccCC------
Confidence            9999999999999999999999999999999999999975421 2222122111110       1111111121      


Q ss_pred             HHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          920 VEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       920 ~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .++.+++.+|++.||++|||+.|+++
T Consensus       317 ~~~~~li~~~L~~dp~~Rps~~e~l~  342 (373)
T 2x4f_A          317 EEAKEFISKLLIKEKSWRISASEALK  342 (373)
T ss_dssp             HHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            25667888999999999999999985

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=1.3e-36  Score=333.79  Aligned_cols=251  Identities=21%  Similarity=0.312  Sum_probs=185.9

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhh-cCCCceeEEeeEEec----CCeeEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL-IMHPNIVRLHGVCRS----EKAAYLVY  760 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~-~~H~niv~l~g~~~~----~~~~~lv~  760 (966)
                      .....+|+|++|.||+|+.  ++..||||++...   ....+..|.+.+... ++|||||++++++..    .+..++||
T Consensus        11 ~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~   85 (301)
T 3q4u_A           11 TLLECVGKGRYGEVWRGSW--QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLIT   85 (301)
T ss_dssp             EEEEEEEECSSEEEEEEEE--TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeeccCCCcEEEEEEE--CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEeh
Confidence            4455678999999999986  7889999988543   223344554444332 689999999999754    34689999


Q ss_pred             EccCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcC-----CCCeEeecCCCCcEEEcCCCCceEEEeccccceec
Q 002105          761 EYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHC-----SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT  833 (966)
Q Consensus       761 Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~-----~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~  833 (966)
                      ||+++|+|.++++  .+++..+.+++.|++.||+|||...     +.+|+||||||+||+++.+.  .++++|||++...
T Consensus        86 e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~--~~kl~Dfg~a~~~  163 (301)
T 3q4u_A           86 HYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNG--QCCIADLGLAVMH  163 (301)
T ss_dssp             CCCTTCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTS--CEEECCCTTCEEE
T ss_pred             hhccCCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCC--CEEEeeCCCeeec
Confidence            9999999999997  4899999999999999999999322     56999999999999999654  5789999987532


Q ss_pred             ----------CCCCcCCcccccccccCCC------CCCCcchHHHHHHHHHHHHcC----------CCCCCCCCCchhhH
Q 002105          834 ----------DSKSINSSAYVAPETKESK------DITEKGDIYGFGLILIDLLTG----------KSPADADFGVHESI  887 (966)
Q Consensus       834 ----------~~~~~~~~~y~aPE~~~~~------~~~~~~Dv~S~Gv~l~el~tg----------~~p~~~~~~~~~~~  887 (966)
                                .....||+.|+|||++.+.      .++.++|||||||++|||+||          +.||..........
T Consensus       164 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~  243 (301)
T 3q4u_A          164 SQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSF  243 (301)
T ss_dssp             ETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCH
T ss_pred             ccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcch
Confidence                      1223789999999998876      455799999999999999999          88876543222222


Q ss_pred             HHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          888 VEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       888 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      ............     .+.+..... ......++.+++.+||+.||++|||+.||+++|++
T Consensus       244 ~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~  299 (301)
T 3q4u_A          244 EDMRKVVCVDQQ-----RPNIPNRWF-SDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTK  299 (301)
T ss_dssp             HHHHHHHTTSCC-----CCCCCGGGG-GSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHH
T ss_pred             hhhhHHHhccCC-----CCCCChhhc-cCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhc
Confidence            111111111111     111111100 12345578889999999999999999999999987

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=4.6e-37  Score=347.54  Aligned_cols=246  Identities=20%  Similarity=0.308  Sum_probs=184.8

Q ss_pred             cccccCCCCCccEEEEEEEe---cCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSL---ANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~---~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      .....+|+|++|.||+|+..   .++..||||++.... ....++|.+|+..+.+ ++|||||+++|+|.+++..++|||
T Consensus        48 ~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~lv~e  126 (373)
T 2qol_A           48 SIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQ-FDHPNIIRLEGVVTKSKPVMIVTE  126 (373)
T ss_dssp             CCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTT-CCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             eeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHh-CCCCCCCeEEEEEeeCCceEEEEe
Confidence            44456789999999999875   357789999886432 2234568888888877 699999999999999999999999


Q ss_pred             ccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC--
Q 002105          762 YIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS--  835 (966)
Q Consensus       762 y~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~--  835 (966)
                      |+++|+|.++++    .++|.++..++.||++||+|||.   .+|+||||||+||+++.+.  .++++|||++.....  
T Consensus       127 ~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~--~~kl~Dfg~a~~~~~~~  201 (373)
T 2qol_A          127 YMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNILINSNL--VCKVSDFGLGRVLEDDP  201 (373)
T ss_dssp             CCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTC--CEEECCC----------
T ss_pred             CCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEEcCCC--CEEECcCccccccccCC
Confidence            999999999996    38999999999999999999994   5899999999999998654  578999998764221  


Q ss_pred             -------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCccccccccc
Q 002105          836 -------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF  907 (966)
Q Consensus       836 -------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  907 (966)
                             ...+++.|+|||++.+..++.++|||||||++|||++ |+.||....  ...+.+.+..   ...     .| 
T Consensus       202 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~--~~~~~~~i~~---~~~-----~~-  270 (373)
T 2qol_A          202 EAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMS--NQDVIKAVDE---GYR-----LP-  270 (373)
T ss_dssp             ------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCC--HHHHHHHHHT---TEE-----CC-
T ss_pred             ccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHc---CCC-----CC-
Confidence                   1234668999999999999999999999999999998 999986531  1222122211   100     00 


Q ss_pred             ccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 002105          908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS  954 (966)
Q Consensus       908 ~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~  954 (966)
                      .....      ..++.+++.+||+.||++||+|.||+++|+++++..
T Consensus       271 ~~~~~------~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~  311 (373)
T 2qol_A          271 PPMDC------PAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNP  311 (373)
T ss_dssp             CCTTC------BHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCG
T ss_pred             CCccc------cHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhCc
Confidence            01111      235677889999999999999999999999966543

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=1.2e-36  Score=343.66  Aligned_cols=256  Identities=16%  Similarity=0.219  Sum_probs=189.2

Q ss_pred             ccccccCCCCCccEEEEEEEecC-----CcEEEEEEEeccCcc-----------cccchHHHHHHHHhhcCCCceeEEee
Q 002105          685 EENLTSRGKKGVSSSYKVRSLAN-----DMQFVVKKIIDVNTI-----------TTSSFWPDVSQFGKLIMHPNIVRLHG  748 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~-----~~~vavk~~~~~~~~-----------~~~~~~~e~~~~~~~~~H~niv~l~g  748 (966)
                      +.....+|+|+||.||+|.+..+     +..||||.+......           ....+..|+..+.+ ++|||||++++
T Consensus        37 y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~-l~h~~iv~~~~  115 (364)
T 3op5_A           37 WKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRK-LKYLGVPKYWG  115 (364)
T ss_dssp             EEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTT-CSCCCSCCEEE
T ss_pred             EEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhh-ccCCCCCeEEe
Confidence            44556689999999999988543     478999988654321           01112233333334 68999999999


Q ss_pred             EEecC----CeeEEEEEccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCc
Q 002105          749 VCRSE----KAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEP  820 (966)
Q Consensus       749 ~~~~~----~~~~lv~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~  820 (966)
                      ++...    ...|+||||+ +|+|.++++    .++|..+..++.||+.||+|||.   .+|+||||||+|||++.+...
T Consensus       116 ~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~---~~iiHrDlkp~Nill~~~~~~  191 (364)
T 3op5_A          116 SGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHE---HEYVHGDIKASNLLLNYKNPD  191 (364)
T ss_dssp             EEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEESSCTT
T ss_pred             eeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH---CCeEEecCCHHHEEEecCCCC
Confidence            99764    4589999999 999999995    38999999999999999999994   599999999999999954556


Q ss_pred             eEEEeccccceecC-------------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhH
Q 002105          821 HLRLSVPGLAYCTD-------------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESI  887 (966)
Q Consensus       821 ~~~~~~~~~~~~~~-------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~  887 (966)
                      .++++|||++....             ....||+.|||||++.+..++.++|||||||++|||+||+.||..........
T Consensus       192 ~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~  271 (364)
T 3op5_A          192 QVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYV  271 (364)
T ss_dssp             CEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHH
T ss_pred             eEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHH
Confidence            78999999985421             22348999999999999999999999999999999999999997543322221


Q ss_pred             HHHHHHhhccCccccccccccc-CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          888 VEWARYCYSDCHLDTWVDPFIR-GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       888 ~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                       .+....... ....++++.+. ...+      .++.+++..||+.||++||++++|++.|+++++.
T Consensus       272 -~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~  330 (364)
T 3op5_A          272 -RDSKIRYRE-NIASLMDKCFPAANAP------GEIAKYMETVKLLDYTEKPLYENLRDILLQGLKA  330 (364)
T ss_dssp             -HHHHHHHHH-CHHHHHHHHSCTTCCC------HHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHhhh-hHHHHHHHhcccccCH------HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence             222211111 11112222221 1111      3566788899999999999999999999987664

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=2.7e-37  Score=342.80  Aligned_cols=237  Identities=22%  Similarity=0.322  Sum_probs=188.5

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      +.....+|+|++|.||+|++..+|..||||++....  ....+.+.+|+..+.+ ++|||||++++++..++..|+||||
T Consensus        17 y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~-l~hpnIv~l~~~~~~~~~~~lv~e~   95 (328)
T 3fe3_A           17 YRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKI-LNHPNIVKLFEVIETEKTLYLIMEY   95 (328)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHH-CCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             EEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHh-CCCCCEeeEEEEEEECCEEEEEEEC
Confidence            344556799999999999998999999999986542  2223456788877777 7999999999999999999999999


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      +++|+|.+++.   .+++.....++.|+++||+|||   +.+|+||||||+||+++.+.  .++++|||++....     
T Consensus        96 ~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~NIll~~~~--~~kl~DFG~a~~~~~~~~~  170 (328)
T 3fe3_A           96 ASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADM--NIKIADFGFSNEFTVGGKL  170 (328)
T ss_dssp             CTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTS--CEEECSTTCCGGGSSSCGG
T ss_pred             CCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCCHHHEEEcCCC--CEEEeeccCceecCCCCcc
Confidence            99999999985   4899999999999999999999   45899999999999998654  57899999885422     


Q ss_pred             CCCcCCcccccccccCCCCCC-CcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          835 SKSINSSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~-~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      ....||+.|+|||++.+..++ .++||||+||++|||+||+.||.+..  ...+.+.+   ... ..      .+....+
T Consensus       171 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~--~~~~~~~i---~~~-~~------~~p~~~s  238 (328)
T 3fe3_A          171 DAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQN--LKELRERV---LRG-KY------RIPFYMS  238 (328)
T ss_dssp             GTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHH---HHC-CC------CCCTTSC
T ss_pred             ccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCC--HHHHHHHH---HhC-CC------CCCCCCC
Confidence            335789999999999888875 79999999999999999999997542  11111111   111 00      0111111


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                            .++.+++.+|++.||++|||++|+++
T Consensus       239 ------~~~~~li~~~L~~dP~~R~t~~eil~  264 (328)
T 3fe3_A          239 ------TDCENLLKRFLVLNPIKRGTLEQIMK  264 (328)
T ss_dssp             ------HHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred             ------HHHHHHHHHHCCCChhHCcCHHHHhc
Confidence                  24567788999999999999999875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.4e-36  Score=351.36  Aligned_cols=321  Identities=22%  Similarity=0.195  Sum_probs=278.3

Q ss_pred             cEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCC
Q 002105          135 EILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYN  214 (966)
Q Consensus       135 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N  214 (966)
                      +.++.+++.++ .+|..+.  ++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            56778888887 4666553  68999999999999988899999999999999999999988999999999999999999


Q ss_pred             CCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCch
Q 002105          215 NLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPE  294 (966)
Q Consensus       215 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  294 (966)
                      .+++..+..|.++++|++|+|++|++.+..|..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+.
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            99876667789999999999999999998899999999999999999999988888999999999999999999987777


Q ss_pred             hhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCc
Q 002105          295 EVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSL  374 (966)
Q Consensus       295 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L  374 (966)
                      .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.......+|+.|++++|.+++..+..+..+++|
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  250 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL  250 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred             HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence            88999999999999999998888889999999999999998888888777777789999999998886554567778888


Q ss_pred             cEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCC
Q 002105          375 FKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGN  454 (966)
Q Consensus       375 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N  454 (966)
                      +.|++++|.+++..+..|..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|+|++|
T Consensus       251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence            88888888888777777888888888888888888887888888888888888888888776666777777777777777


Q ss_pred             cCCc
Q 002105          455 NFSG  458 (966)
Q Consensus       455 ~l~~  458 (966)
                      .+..
T Consensus       331 ~l~c  334 (477)
T 2id5_A          331 PLAC  334 (477)
T ss_dssp             CEEC
T ss_pred             CccC
Confidence            7764

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.3e-36  Score=336.82  Aligned_cols=240  Identities=19%  Similarity=0.256  Sum_probs=189.9

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|+|++|.||+++...++..||+|.+... ......+.+|+..+.+ ++|||||++++++.+++..++|||||++|
T Consensus         9 ~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~-l~hpnIv~~~~~~~~~~~~~lv~e~~~g~   86 (321)
T 1tki_A            9 IAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNI-ARHRNILHLHESFESMEELVMIFEFISGL   86 (321)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-THHHHHHHHHHHHHHH-SCCTTBCCEEEEEEETTEEEEEECCCCCC
T ss_pred             eeeEEecCCCeEEEEEEECCCCcEEEEEEEecC-cccHHHHHHHHHHHHh-CCCCCCCeEeEEEecCCEEEEEEEeCCCC
Confidence            344578999999999999888999999987533 2233456778877776 79999999999999999999999999999


Q ss_pred             CHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-----CC
Q 002105          767 ELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----KS  837 (966)
Q Consensus       767 ~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-----~~  837 (966)
                      +|.+++.    .+++.++..++.|++.||+|||   ..+|+||||||+||+++.+....++++|||.+.....     ..
T Consensus        87 ~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~  163 (321)
T 1tki_A           87 DIFERINTSAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLL  163 (321)
T ss_dssp             BHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEE
T ss_pred             CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCccccc
Confidence            9999996    3889999999999999999999   4599999999999999975567789999999865432     23


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      .||+.|+|||++.+..++.++|||||||++|||+||+.||..... .+.. +.+.   ... ..  .++......+    
T Consensus       164 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-~~~~-~~i~---~~~-~~--~~~~~~~~~s----  231 (321)
T 1tki_A          164 FTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN-QQII-ENIM---NAE-YT--FDEEAFKEIS----  231 (321)
T ss_dssp             ESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH-HHHH-HHHH---HTC-CC--CCHHHHTTSC----
T ss_pred             cCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH-HHHH-HHHH---cCC-CC--CChhhhccCC----
Confidence            589999999999998899999999999999999999999975421 1111 1111   110 00  1110111111    


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                        .++.+++.+|++.||++|||+.|+++
T Consensus       232 --~~~~~li~~~L~~dp~~Rpt~~e~l~  257 (321)
T 1tki_A          232 --IEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             --HHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             --HHHHHHHHHHcCCChhHCcCHHHHhc
Confidence              35667888999999999999999986

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=6.5e-37  Score=347.26  Aligned_cols=242  Identities=22%  Similarity=0.333  Sum_probs=192.4

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .....+|+|++|.||+|+...++..||||++.... ....++|.+|+..+.+ ++|||||+++|+|..++..|+|||||+
T Consensus       117 ~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~hpniv~~~~~~~~~~~~~lv~e~~~  195 (377)
T 3cbl_A          117 VLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQ-YSHPNIVRLIGVCTQKQPIYIVMELVQ  195 (377)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTT-CCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             EEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHh-CCCCCEEEEEEEEecCCCcEEEEEcCC
Confidence            34456799999999999997789999999876432 2233568888888877 699999999999999999999999999


Q ss_pred             CCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-----
Q 002105          765 GKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----  835 (966)
Q Consensus       765 ~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-----  835 (966)
                      +|+|.++++    .+++..+..++.|||+||+|||   +.+|+||||||+|||++.+.  .++++|||++.....     
T Consensus       196 ~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nil~~~~~--~~kl~DfG~s~~~~~~~~~~  270 (377)
T 3cbl_A          196 GGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKN--VLKISDFGMSREEADGVYAA  270 (377)
T ss_dssp             TCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTC--CEEECCGGGCEECTTSEEEC
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccCHHHEEEcCCC--cEEECcCCCceecCCCceee
Confidence            999999996    3899999999999999999999   45899999999999998654  578999998864321     


Q ss_pred             ---CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCC
Q 002105          836 ---KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH  911 (966)
Q Consensus       836 ---~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  911 (966)
                         ...+++.|+|||.+.+..++.++|||||||++|||+| |+.||....  ...+.+.+..   ....      .....
T Consensus       271 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~--~~~~~~~~~~---~~~~------~~~~~  339 (377)
T 3cbl_A          271 SGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLS--NQQTREFVEK---GGRL------PCPEL  339 (377)
T ss_dssp             CSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSC--HHHHHHHHHT---TCCC------CCCTT
T ss_pred             cCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHc---CCCC------CCCCC
Confidence               1124567999999988889999999999999999999 999986531  1222222211   1111      01111


Q ss_pred             CcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 002105          912 VSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESC  950 (966)
Q Consensus       912 ~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~  950 (966)
                      ++      .++.+++.+||+.||++|||+++|+++|+++
T Consensus       340 ~~------~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  372 (377)
T 3cbl_A          340 CP------DAVFRLMEQCWAYEPGQRPSFSTIYQELQSI  372 (377)
T ss_dssp             CC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CC------HHHHHHHHHHcCCCchhCcCHHHHHHHHHHH
Confidence            22      2566788899999999999999999999984

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=3e-36  Score=338.33  Aligned_cols=241  Identities=23%  Similarity=0.317  Sum_probs=189.3

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC-----cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-----TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-----~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      .....+|+|++|.||+|+...+|..||||++....     ....+.+.+|+..+.+ ++|||||++++++.+++..|+||
T Consensus        27 ~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~hpnIv~~~~~~~~~~~~~lv~  105 (351)
T 3c0i_A           27 ELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHM-LKHPHIVELLETYSSDGMLYMVF  105 (351)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHH-CCCTTBCCEEEEEEETTEEEEEE
T ss_pred             EEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHh-CCCCCCCcEEEEEEeCCEEEEEE
Confidence            44556789999999999998899999999985321     1233457788877777 69999999999999999999999


Q ss_pred             EccCCCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC-CceEEEecccccee
Q 002105          761 EYIEGKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAYC  832 (966)
Q Consensus       761 Ey~~~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~-~~~~~~~~~~~~~~  832 (966)
                      |||++|+|.+++.       .+++..+..++.||+.||+|||   +.+|+||||||+||+++.+. ...++++|||++..
T Consensus       106 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~  182 (351)
T 3c0i_A          106 EFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQ  182 (351)
T ss_dssp             ECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEE
T ss_pred             eCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChHHeEEecCCCCCcEEEecCcceeE
Confidence            9999999988874       2789999999999999999999   45899999999999998653 35589999999865


Q ss_pred             cC------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccc
Q 002105          833 TD------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDP  906 (966)
Q Consensus       833 ~~------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  906 (966)
                      ..      ....||+.|+|||++.+..++.++|||||||++|||+||+.||.+.   .+...+...   .. ...  .++
T Consensus       183 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~---~~~~~~~i~---~~-~~~--~~~  253 (351)
T 3c0i_A          183 LGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGT---KERLFEGII---KG-KYK--MNP  253 (351)
T ss_dssp             CCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSS---HHHHHHHHH---HT-CCC--CCH
T ss_pred             ecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCc---HHHHHHHHH---cC-CCC--CCc
Confidence            32      2346899999999999999999999999999999999999999753   121111111   11 000  111


Q ss_pred             cccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          907 FIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       907 ~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ......+      .++.+++.+|++.||++|||+.|+++
T Consensus       254 ~~~~~~s------~~~~~li~~~L~~dP~~R~s~~e~l~  286 (351)
T 3c0i_A          254 RQWSHIS------ESAKDLVRRMLMLDPAERITVYEALN  286 (351)
T ss_dssp             HHHTTSC------HHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cccccCC------HHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            1111121      25667888999999999999999874

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=8.8e-36  Score=326.72  Aligned_cols=251  Identities=13%  Similarity=0.127  Sum_probs=197.2

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .....+|+|++|.||+|+...++..||||++....  ..+.+.+|+..+.++.+||||+++++++..+...++||||+ +
T Consensus        13 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~   89 (298)
T 1csn_A           13 KVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-G   89 (298)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-C
T ss_pred             EEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec-C
Confidence            34455788999999999998899999999885432  34568888888888558999999999999999999999999 9


Q ss_pred             CCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC---ceEEEeccccceecC----
Q 002105          766 KELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE---PHLRLSVPGLAYCTD----  834 (966)
Q Consensus       766 g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~---~~~~~~~~~~~~~~~----  834 (966)
                      |+|.++++    .+++..+..++.||++||+|||   +.+|+||||||+||+++.+..   ..++++|||.+....    
T Consensus        90 ~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~  166 (298)
T 1csn_A           90 PSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVT  166 (298)
T ss_dssp             CBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTT
T ss_pred             CCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccc
Confidence            99999997    3899999999999999999999   569999999999999986432   348999999986422    


Q ss_pred             ---------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc-hhhHHHHHHHhhccCcccccc
Q 002105          835 ---------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV-HESIVEWARYCYSDCHLDTWV  904 (966)
Q Consensus       835 ---------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  904 (966)
                               ....||+.|+|||++.+..++.++|||||||++|||+||+.||...... .......+.........    
T Consensus       167 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~----  242 (298)
T 1csn_A          167 KQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPL----  242 (298)
T ss_dssp             CCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCH----
T ss_pred             cccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccH----
Confidence                     2345899999999999999999999999999999999999999764322 11111111111000000    


Q ss_pred             cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          905 DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       905 d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                       +.....++      .++.+++.+||+.||++||++++|++.|+++++.
T Consensus       243 -~~~~~~~~------~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~  284 (298)
T 1csn_A          243 -RELCAGFP------EEFYKYMHYARNLAFDATPDYDYLQGLFSKVLER  284 (298)
T ss_dssp             -HHHTTTSC------HHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             -HHHHhhCc------HHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHh
Confidence             00111122      3566788899999999999999999999996654

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.4e-36  Score=335.53  Aligned_cols=241  Identities=22%  Similarity=0.320  Sum_probs=190.4

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc------cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI------TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~------~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      ....+|+|++|.||+|+...+|..||+|.+......      ..+.+.+|+..+.+ ++|||||++++++.+++..++||
T Consensus        15 ~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~~~lv~   93 (326)
T 2y0a_A           15 TGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKE-IQHPNVITLHEVYENKTDVILIL   93 (326)
T ss_dssp             EEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHH-CCCTTBCCEEEEEECSSEEEEEE
T ss_pred             eceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHh-CCCCCCCcEEEEEEeCCEEEEEE
Confidence            345578999999999999889999999998654322      23457788888777 69999999999999999999999


Q ss_pred             EccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC--CceEEEeccccceecC-
Q 002105          761 EYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD--EPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       761 Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~--~~~~~~~~~~~~~~~~-  834 (966)
                      ||+++|+|.+++..   +++..+..++.||+.||+|||   +.+|+||||||+||+++.+.  ...++++|||++.... 
T Consensus        94 e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~  170 (326)
T 2y0a_A           94 ELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF  170 (326)
T ss_dssp             ECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCT
T ss_pred             EcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCC
Confidence            99999999999963   899999999999999999999   45899999999999998754  2368999999986532 


Q ss_pred             ----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                          ....||+.|+|||++.+..++.++|||||||++|||+||+.||.+... .+.. .....  ....    ..+....
T Consensus       171 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-~~~~-~~~~~--~~~~----~~~~~~~  242 (326)
T 2y0a_A          171 GNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK-QETL-ANVSA--VNYE----FEDEYFS  242 (326)
T ss_dssp             TSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH-HHHH-HHHHH--TCCC----CCHHHHT
T ss_pred             CCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH-HHHH-HHHHh--cCCC----cCccccc
Confidence                234689999999999999999999999999999999999999975421 1111 11111  0000    0000111


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ..+      .++.+++.+|++.||++|||+.|+++
T Consensus       243 ~~~------~~~~~li~~~L~~dP~~Rpt~~e~l~  271 (326)
T 2y0a_A          243 NTS------ALAKDFIRRLLVKDPKKRMTIQDSLQ  271 (326)
T ss_dssp             TSC------HHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             cCC------HHHHHHHHHHccCChhhCCCHHHHhc
Confidence            111      24667888999999999999999975

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=2e-36  Score=331.21  Aligned_cols=250  Identities=24%  Similarity=0.378  Sum_probs=193.2

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc---ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|++|.||++++..++..||+|++.......   .+.+.+|+..+.+ ++|||||++++++.+++..|+||||
T Consensus        14 ~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-l~hp~iv~~~~~~~~~~~~~lv~e~   92 (294)
T 4eqm_A           14 KIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQ-LSHQNIVSMIDVDEEDDCYYLVMEY   92 (294)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTT-CCBTTBCCEEEEEECSSEEEEEEEC
T ss_pred             EEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhc-CCCCCCceEEEeeeeCCeEEEEEeC
Confidence            34556789999999999998899999999985433222   2456778877777 6999999999999999999999999


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      +++|+|.++++   .+++..+..++.|++.||+|||   +.+|+||||||+||+++.+.  .+++.|||.+....     
T Consensus        93 ~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~--~~kl~Dfg~~~~~~~~~~~  167 (294)
T 4eqm_A           93 IEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNK--TLKIFDFGIAKALSETSLT  167 (294)
T ss_dssp             CCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTS--CEEECCCSSSTTC------
T ss_pred             CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCC--CEEEEeCCCcccccccccc
Confidence            99999999996   3899999999999999999999   45899999999999998664  57899999875321     


Q ss_pred             --CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 --SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 --~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                        ....||+.|+|||++.+..++.++|||||||++|||+||+.||.+.... .    .......... .. ..+......
T Consensus       168 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~-~----~~~~~~~~~~-~~-~~~~~~~~~  240 (294)
T 4eqm_A          168 QTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAV-S----IAIKHIQDSV-PN-VTTDVRKDI  240 (294)
T ss_dssp             -------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHH-H----HHHHHHSSCC-CC-HHHHSCTTS
T ss_pred             ccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH-H----HHHHHhhccC-CC-cchhcccCC
Confidence              2246899999999999999999999999999999999999999754211 1    1111111111 00 111111122


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCC-CHHHHHHHHHHhhccC
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARP-CASDVTKTLESCFRIS  954 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RP-t~~~v~~~L~~~~~~~  954 (966)
                      +      .++.+++.+|++.||++|| +++++.+.|++++...
T Consensus       241 ~------~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~  277 (294)
T 4eqm_A          241 P------QSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHEN  277 (294)
T ss_dssp             C------HHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSS
T ss_pred             C------HHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhc
Confidence            2      2466778899999999999 8999999999865544

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=5.4e-36  Score=326.58  Aligned_cols=246  Identities=26%  Similarity=0.398  Sum_probs=189.3

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccc-------cchHHHHHHHHhhcCCCceeEEeeEEecCCeeEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITT-------SSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL  758 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~-------~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~l  758 (966)
                      .....+|+|++|.||+|+...++..||||++........       +.+.+|+..+.+ ++|||||++++++.+..  ++
T Consensus        22 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~--~l   98 (287)
T 4f0f_A           22 EYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSN-LNHPNIVKLYGLMHNPP--RM   98 (287)
T ss_dssp             EEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTT-CCCTTBCCEEEEETTTT--EE
T ss_pred             eehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHh-CCCCCchhhheeecCCC--eE
Confidence            345567999999999999988999999998864432221       457778887777 69999999999997665  79


Q ss_pred             EEEccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC---ceEEEeccccce
Q 002105          759 VYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE---PHLRLSVPGLAY  831 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~---~~~~~~~~~~~~  831 (966)
                      ||||+++|+|.+++.    .+++..+..++.|++.||+|||.. .++|+||||||+||+++.+..   ..++++|||.+.
T Consensus        99 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~  177 (287)
T 4f0f_A           99 VMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQ  177 (287)
T ss_dssp             EEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTS-SSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCB
T ss_pred             EEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhC-CCCeecCCCCcceEEEeccCCCCceeEEeCCCCccc
Confidence            999999999999884    389999999999999999999944 223999999999999986442   347899999886


Q ss_pred             ecC---CCCcCCccccccccc--CCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccc
Q 002105          832 CTD---SKSINSSAYVAPETK--ESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDP  906 (966)
Q Consensus       832 ~~~---~~~~~~~~y~aPE~~--~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  906 (966)
                      ...   ....||+.|+|||++  ....++.++|||||||++|||+||+.||...............   ...     ..+
T Consensus       178 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~---~~~-----~~~  249 (287)
T 4f0f_A          178 QSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIR---EEG-----LRP  249 (287)
T ss_dssp             CCSSCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHH---HSC-----CCC
T ss_pred             cccccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHh---ccC-----CCC
Confidence            432   234689999999998  4556789999999999999999999999754322221111111   111     112


Q ss_pred             cccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          907 FIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       907 ~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      .+....+      .++.+++.+||+.||++|||++||+++|++
T Consensus       250 ~~~~~~~------~~l~~li~~~l~~dp~~Rps~~~ll~~L~~  286 (287)
T 4f0f_A          250 TIPEDCP------PRLRNVIELCWSGDPKKRPHFSYIVKELSE  286 (287)
T ss_dssp             CCCTTSC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred             CCCcccC------HHHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence            2222222      256678889999999999999999999986

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=1.2e-36  Score=344.77  Aligned_cols=243  Identities=19%  Similarity=0.293  Sum_probs=193.6

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      +.....+|+|++|.||+|+...+|..||+|.+..........+.+|+..+.+ ++|||||++++++.+++..++||||++
T Consensus        53 y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~-l~hpnIv~~~~~~~~~~~~~lv~E~~~  131 (387)
T 1kob_A           53 YDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQ-LHHPKLINLHDAFEDKYEMVLILEFLS  131 (387)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTT-CCSTTBCCEEEEEECSSEEEEEEECCC
T ss_pred             eEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHh-CCCcCCCeEEEEEEeCCEEEEEEEcCC
Confidence            3445567999999999999988999999998865544444567788887777 699999999999999999999999999


Q ss_pred             CCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-----
Q 002105          765 GKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----  835 (966)
Q Consensus       765 ~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-----  835 (966)
                      +|+|.+++.    .+++.....++.||+.||+|||   +.+|+||||||+||+++.+....++++|||++.....     
T Consensus       132 gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~  208 (387)
T 1kob_A          132 GGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVK  208 (387)
T ss_dssp             CCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEE
T ss_pred             CCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccchHHeEEecCCCCceEEEecccceecCCCccee
Confidence            999999985    4789999999999999999999   4589999999999999876666789999999875432     


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...||+.|+|||++.+..++.++|||||||++|||+||+.||.+... .+.. ..+...    ...  .++......+  
T Consensus       209 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~-~~~~-~~i~~~----~~~--~~~~~~~~~s--  278 (387)
T 1kob_A          209 VTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD-LETL-QNVKRC----DWE--FDEDAFSSVS--  278 (387)
T ss_dssp             EECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH-HHHH-HHHHHC----CCC--CCSSTTTTSC--
T ss_pred             eeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCH-HHHH-HHHHhC----CCC--CCccccccCC--
Confidence            23689999999999999999999999999999999999999975421 1111 111110    000  1111111122  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                          .++.+++.+|++.||++|||+.|+++
T Consensus       279 ----~~~~~li~~~L~~dP~~Rpt~~ell~  304 (387)
T 1kob_A          279 ----PEAKDFIKNLLQKEPRKRLTVHDALE  304 (387)
T ss_dssp             ----HHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             ----HHHHHHHHHHcCCChhHCcCHHHHhh
Confidence                24667888999999999999999975

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=3.5e-36  Score=335.08  Aligned_cols=249  Identities=13%  Similarity=0.114  Sum_probs=195.4

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .....+|+|++|.||+|+...++..||||.+....  ..+.+..|+..+.++-+||||+++++++..++..++||||+ +
T Consensus        12 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~-~   88 (330)
T 2izr_A           12 RVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS--RAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL-G   88 (330)
T ss_dssp             EEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC--SSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC-C
T ss_pred             EEEEEeeccCCceEEEEEECCCCcEEEEEEecccc--chHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC-C
Confidence            44556799999999999998899999999876442  34568889888887439999999999999999999999999 9


Q ss_pred             CCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC---ceEEEeccccceecC----
Q 002105          766 KELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE---PHLRLSVPGLAYCTD----  834 (966)
Q Consensus       766 g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~---~~~~~~~~~~~~~~~----  834 (966)
                      |+|.++++    .+++..+..++.|++.||+|||.   .+|+||||||+||+++.+..   ..++++|||++....    
T Consensus        89 ~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~  165 (330)
T 2izr_A           89 PSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHS---KNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPET  165 (330)
T ss_dssp             CBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTT
T ss_pred             CCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCC
Confidence            99999986    48999999999999999999994   58999999999999986543   238999999986421    


Q ss_pred             ---------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc--hhhHHHHHHHhhccCccccc
Q 002105          835 ---------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV--HESIVEWARYCYSDCHLDTW  903 (966)
Q Consensus       835 ---------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~  903 (966)
                               ....||+.|+|||++.+..++.++|||||||++|||+||+.||......  .+....+....... .    
T Consensus       166 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~-~----  240 (330)
T 2izr_A          166 KKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRAT-P----  240 (330)
T ss_dssp             CCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHS-C----
T ss_pred             CccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccC-C----
Confidence                     2346899999999999999999999999999999999999999764221  11111111110000 0    


Q ss_pred             ccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          904 VDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       904 ~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                       .+.....       ..++.+++..||+.||.+||++++|.+.|++.++.
T Consensus       241 -~~~~~~~-------~p~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~  282 (330)
T 2izr_A          241 -IEVLCEN-------FPEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR  282 (330)
T ss_dssp             -HHHHTTT-------CHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             -HHHHhcc-------ChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence             0000000       11677788899999999999999999999986543

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=5.3e-36  Score=333.37  Aligned_cols=237  Identities=23%  Similarity=0.283  Sum_probs=188.0

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ......+|+|++|.||+|+...+|+.||+|.+....   ......+.+|+..+.+ ++|||||++++++..++..|+|||
T Consensus         7 y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~l~~~~~~~~~~~lv~E   85 (337)
T 1o6l_A            7 FDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN-TRHPFLTALKYAFQTHDRLCFVME   85 (337)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHS-CCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             eEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHh-CCCCcCcceEEEEEeCCEEEEEEe
Confidence            344556799999999999998899999999986532   2223446777777776 699999999999999999999999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-----
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-----  833 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-----  833 (966)
                      |++||+|.+++.   .+++.....++.||+.||+|||   +.+|+||||||+|||++.++  +++++|||++...     
T Consensus        86 ~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g--~vkL~DFG~a~~~~~~~~  160 (337)
T 1o6l_A           86 YANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDG--HIKITDFGLCKEGISDGA  160 (337)
T ss_dssp             CCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTS--CEEECCCTTCBCSCCTTC
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCCHHHEEECCCC--CEEEeeccchhhcccCCC
Confidence            999999999986   3899999999999999999999   45899999999999998654  6899999988642     


Q ss_pred             -CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          834 -DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       834 -~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                       ....+||+.|+|||++.+..++.++|||||||++|||+||+.||....  ...+.+.+.   .. .      +.+....
T Consensus       161 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~--~~~~~~~i~---~~-~------~~~p~~~  228 (337)
T 1o6l_A          161 TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD--HERLFELIL---ME-E------IRFPRTL  228 (337)
T ss_dssp             CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHH---HC-C------CCCCTTS
T ss_pred             cccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCC--HHHHHHHHH---cC-C------CCCCCCC
Confidence             223468999999999999999999999999999999999999997531  111111111   11 0      0111112


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARP-----CASDVTK  945 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RP-----t~~~v~~  945 (966)
                      +      .++.+++.+|++.||++||     +++||++
T Consensus       229 s------~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~  260 (337)
T 1o6l_A          229 S------PEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             C------HHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             C------HHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence            2      2456677899999999999     8888864

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.6e-36  Score=330.50  Aligned_cols=243  Identities=24%  Similarity=0.407  Sum_probs=185.8

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|+|++|.||+++.  .+..||||++...  ...+.|.+|+..+.+ ++|||||+++|++.+  ..++||||+++|
T Consensus        12 ~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~--~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~--~~~lv~e~~~~~   84 (307)
T 2eva_A           12 VEEVVGRGAFGVVCKAKW--RAKDVAIKQIESE--SERKAFIVELRQLSR-VNHPNIVKLYGACLN--PVCLVMEYAEGG   84 (307)
T ss_dssp             EEEEEECCSSSEEEEEEE--TTEEEEEEECSST--THHHHHHHHHHHHHH-CCCTTBCCEEEBCTT--TTEEEEECCTTC
T ss_pred             eeeEeecCCCceEEEEEE--CCeeEEEEEecCh--hHHHHHHHHHHHHhc-CCCCCcCeEEEEEcC--CcEEEEEcCCCC
Confidence            344578999999999986  5788999987532  234568888888888 699999999999874  479999999999


Q ss_pred             CHHHHHHc------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---CCC
Q 002105          767 ELSEVLRN------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---SKS  837 (966)
Q Consensus       767 ~L~~~l~~------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---~~~  837 (966)
                      +|.++++.      +++.....++.|+++||+|||+.+..+|+||||||+||+++.+. ..++++|||.+....   ...
T Consensus        85 ~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~-~~~kl~Dfg~~~~~~~~~~~~  163 (307)
T 2eva_A           85 SLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGG-TVLKICDFGTACDIQTHMTNN  163 (307)
T ss_dssp             BHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTT-TEEEECCCCC-----------
T ss_pred             CHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCC-CEEEEcccccccccccccccC
Confidence            99999973      67899999999999999999965447999999999999998654 347899999875432   234


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      .||+.|+|||++.+..++.++|||||||++|||+||+.||.........+ .|...  ...      .+......+    
T Consensus       164 ~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~-~~~~~--~~~------~~~~~~~~~----  230 (307)
T 2eva_A          164 KGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRI-MWAVH--NGT------RPPLIKNLP----  230 (307)
T ss_dssp             -CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHH-HHHHH--TTC------CCCCBTTCC----
T ss_pred             CCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHH-HHHHh--cCC------CCCcccccC----
Confidence            68999999999999999999999999999999999999997542222211 12111  111      111111222    


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                        .++.+++.+||+.||++|||++||++.|+.+.+
T Consensus       231 --~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~  263 (307)
T 2eva_A          231 --KPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMR  263 (307)
T ss_dssp             --HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGG
T ss_pred             --HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence              246678889999999999999999999998544

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=7.8e-36  Score=338.11  Aligned_cols=239  Identities=21%  Similarity=0.303  Sum_probs=185.8

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ......+|+|++|.||+|+...++..||+|++.....   ...+.+..|...+.+..+|||||++++++.+++..|+|||
T Consensus        54 y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV~E  133 (396)
T 4dc2_A           54 FDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIE  133 (396)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEE
T ss_pred             cEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEEEE
Confidence            4556678999999999999988999999999875422   2234467777777776689999999999999999999999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee------
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------  832 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~------  832 (966)
                      ||++|+|..+++   .+++..+..++.||+.||+|||   +.+||||||||+|||++.++  +++++|||++..      
T Consensus       134 ~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g--~ikL~DFGla~~~~~~~~  208 (396)
T 4dc2_A          134 YVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEG--HIKLTDYGMCKEGLRPGD  208 (396)
T ss_dssp             CCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTS--CEEECCCTTCBCCCCTTC
T ss_pred             cCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEECCCC--CEEEeecceeeecccCCC
Confidence            999999999986   4899999999999999999999   45899999999999999654  589999999864      


Q ss_pred             cCCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCch---hhHHHHHHHhhccCccccccccccc
Q 002105          833 TDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVH---ESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       833 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                      .....+||+.|+|||++.+..|+.++|||||||++|||+||+.||.......   ....++.........      +.+.
T Consensus       209 ~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~------~~~p  282 (396)
T 4dc2_A          209 TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQ------IRIP  282 (396)
T ss_dssp             CBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCC------CCCC
T ss_pred             ccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccc------cCCC
Confidence            1234578999999999999999999999999999999999999996431110   000011111111111      1111


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCH
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCA  940 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~  940 (966)
                      ...+      .++.+++.+|++.||++||++
T Consensus       283 ~~~s------~~~~~li~~lL~~dP~~R~~~  307 (396)
T 4dc2_A          283 RSLS------VKAASVLKSFLNKDPKERLGC  307 (396)
T ss_dssp             TTSC------HHHHHHHHHHTCSCTTTSTTC
T ss_pred             CcCC------HHHHHHHHHHhcCCHhHcCCC
Confidence            1122      245677889999999999996

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=1.4e-36  Score=332.66  Aligned_cols=249  Identities=18%  Similarity=0.253  Sum_probs=189.6

Q ss_pred             cccccCCCCCccEEEEEE----EecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecC--CeeEEE
Q 002105          686 ENLTSRGKKGVSSSYKVR----SLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--KAAYLV  759 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~----~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--~~~~lv  759 (966)
                      .....+|+|++|.||+++    ...++..||||++........+.+.+|+..+.+ ++|||||+++++|...  ...++|
T Consensus        13 ~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~~lv   91 (295)
T 3ugc_A           13 KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKS-LQHDNIVKYKGVCYSAGRRNLKLI   91 (295)
T ss_dssp             EEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHT-CCCTTBCCEEEEECHHHHTSCEEE
T ss_pred             hhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHh-CCCCCEeeEEEEEecCCCCceEEE
Confidence            445567999999999998    456788999999875544445568888888888 6999999999999653  568999


Q ss_pred             EEccCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-
Q 002105          760 YEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-  834 (966)
                      |||+++|+|.++++.    +++..+..++.|++.||+|||   +.+|+||||||+||+++.+  ..++++|||.+.... 
T Consensus        92 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~--~~~kl~Dfg~~~~~~~  166 (295)
T 3ugc_A           92 MEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENE--NRVKIGDFGLTKVLPQ  166 (295)
T ss_dssp             EECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEET--TEEEECCCCSCC----
T ss_pred             EEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHhhEEEcCC--CeEEEccCcccccccC
Confidence            999999999999963    899999999999999999999   4599999999999999865  467899999886421 


Q ss_pred             --------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc----------hhhHHHHHHHhhc
Q 002105          835 --------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV----------HESIVEWARYCYS  896 (966)
Q Consensus       835 --------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~----------~~~~~~~~~~~~~  896 (966)
                              ....+++.|+|||.+.+..++.++|||||||++|||+||..|+......          .............
T Consensus       167 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (295)
T 3ugc_A          167 DKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLK  246 (295)
T ss_dssp             ---------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHH
T ss_pred             CcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHh
Confidence                    1234566799999999899999999999999999999999997532100          0000001111111


Q ss_pred             cCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 002105          897 DCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCF  951 (966)
Q Consensus       897 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~  951 (966)
                      ...     .+.....+      ..++.+++.+||+.||++|||++||+++|+++.
T Consensus       247 ~~~-----~~~~~~~~------~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~  290 (295)
T 3ugc_A          247 NNG-----RLPRPDGC------PDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR  290 (295)
T ss_dssp             TTC-----CCCCCTTC------CHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ccC-----cCCCCcCc------CHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence            000     00011112      135677888999999999999999999999843

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=1.1e-36  Score=343.32  Aligned_cols=246  Identities=20%  Similarity=0.289  Sum_probs=191.0

Q ss_pred             cccccCCCCCccEEEEEEE-----ecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCC-eeEE
Q 002105          686 ENLTSRGKKGVSSSYKVRS-----LANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK-AAYL  758 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~-----~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~-~~~l  758 (966)
                      .....+|+|++|.||+|+.     ..+++.||||++..... ...+.+.+|+..+.++-+|||||+++++|.+++ ..++
T Consensus        25 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~~~~i  104 (359)
T 3vhe_A           25 KLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMV  104 (359)
T ss_dssp             EEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEE
T ss_pred             eeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCCCceEE
Confidence            4455679999999999984     45668999999865432 223458889988888558999999999998755 4899


Q ss_pred             EEEccCCCCHHHHHHc----------------------------------------------------------------
Q 002105          759 VYEYIEGKELSEVLRN----------------------------------------------------------------  774 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~~----------------------------------------------------------------  774 (966)
                      ||||+++|+|.++++.                                                                
T Consensus       105 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (359)
T 3vhe_A          105 IVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPED  184 (359)
T ss_dssp             EEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------------------C
T ss_pred             EEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhcccccc
Confidence            9999999999999963                                                                


Q ss_pred             -----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec--------CCCCcCCc
Q 002105          775 -----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT--------DSKSINSS  841 (966)
Q Consensus       775 -----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  841 (966)
                           +++..+..++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||.+...        .....+|+
T Consensus       185 ~~~~~l~~~~~~~~~~ql~~aL~~LH---~~~ivH~Dikp~NIll~~~~--~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~  259 (359)
T 3vhe_A          185 LYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKN--VVKICDFGLARDIYKDPDYVRKGDARLPL  259 (359)
T ss_dssp             TTTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGG--CEEECCCGGGSCTTSCTTCEEC--CEECG
T ss_pred             hhccccCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCC--cEEEEeccceeeecccccchhccccCCCc
Confidence                 788899999999999999999   45899999999999998654  5789999988642        12345688


Q ss_pred             ccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHH
Q 002105          842 AYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIV  920 (966)
Q Consensus       842 ~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  920 (966)
                      .|+|||++.+..++.++|||||||++|||+| |+.||.+..... .+......   ...      +......+      .
T Consensus       260 ~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-~~~~~~~~---~~~------~~~~~~~~------~  323 (359)
T 3vhe_A          260 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-EFCRRLKE---GTR------MRAPDYTT------P  323 (359)
T ss_dssp             GGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH-HHHHHHHH---TCC------CCCCTTCC------H
T ss_pred             eeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhH-HHHHHHHc---CCC------CCCCCCCC------H
Confidence            8999999999999999999999999999999 999997643222 12121111   100      01111121      2


Q ss_pred             HHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          921 EIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       921 ~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      ++.+++..||+.||++||||+||++.|++++.
T Consensus       324 ~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~  355 (359)
T 3vhe_A          324 EMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  355 (359)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCChhhCCCHHHHHHHHHHHHH
Confidence            46678889999999999999999999998543

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=2.9e-36  Score=339.52  Aligned_cols=242  Identities=22%  Similarity=0.290  Sum_probs=189.9

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .....+|+|++|.||++....+|..||+|++.....  ...+.+.+|+..+.+ ++|||||++++++.+++..|+||||+
T Consensus        32 ~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~-l~hpnIv~~~~~~~~~~~~~lv~e~~  110 (362)
T 2bdw_A           32 DVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRK-LQHPNIVRLHDSIQEESFHYLVFDLV  110 (362)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHH-CCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             EEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHh-CCCCCCCeEEEEEEeCCEEEEEEecC
Confidence            444567899999999999988999999999865432  223456778877777 69999999999999999999999999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC-ceEEEeccccceecC-----
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~-~~~~~~~~~~~~~~~-----  834 (966)
                      ++|+|.+++.   .+++.....++.||++||+|||.   .+|+||||||+||+++.+.. ..++++|||++....     
T Consensus       111 ~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~~  187 (362)
T 2bdw_A          111 TGGELFEDIVAREFYSEADASHCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAW  187 (362)
T ss_dssp             CSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCSC
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCccc
Confidence            9999999986   37899999999999999999994   58999999999999986543 568999999986532     


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ....||+.|+|||++.+..++.++|||||||++|||+||+.||....  ...+...+...    ... +..+.. ...+ 
T Consensus       188 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~--~~~~~~~i~~~----~~~-~~~~~~-~~~~-  258 (362)
T 2bdw_A          188 HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED--QHRLYAQIKAG----AYD-YPSPEW-DTVT-  258 (362)
T ss_dssp             CCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHT----CCC-CCTTGG-GGSC-
T ss_pred             ccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC--HHHHHHHHHhC----CCC-CCcccc-cCCC-
Confidence            23478999999999999999999999999999999999999987532  11111211111    000 011110 1111 


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                           .++.+++.+|++.||++|||+.|+++
T Consensus       259 -----~~~~~li~~~L~~dP~~R~t~~e~l~  284 (362)
T 2bdw_A          259 -----PEAKSLIDSMLTVNPKKRITADQALK  284 (362)
T ss_dssp             -----HHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             -----HHHHHHHHHHcCCChhhCcCHHHHhc
Confidence                 24667888999999999999999864

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=3.6e-36  Score=343.38  Aligned_cols=237  Identities=22%  Similarity=0.323  Sum_probs=183.3

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEec----CCeeEEEEEccCC
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS----EKAAYLVYEYIEG  765 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~----~~~~~lv~Ey~~~  765 (966)
                      .+|.|++|.||+++...++..||||++..     ...+.+|+..+.+..+|||||+++++|..    ++..|+|||||+|
T Consensus        69 ~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~g  143 (400)
T 1nxk_A           69 VLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDG  143 (400)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCS
T ss_pred             eeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEeCCC
Confidence            46899999999999988999999999853     23567788877777799999999999875    5678999999999


Q ss_pred             CCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC-CceEEEeccccceecC-----
Q 002105          766 KELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       766 g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~-~~~~~~~~~~~~~~~~-----  834 (966)
                      |+|.++++.     +++..+..++.||+.||+|||.   .+|+||||||+|||++.+. ...++++|||++....     
T Consensus       144 g~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~  220 (400)
T 1nxk_A          144 GELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL  220 (400)
T ss_dssp             EEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC-----
T ss_pred             CcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCcCcceEEEecCCCCccEEEEecccccccCCCCcc
Confidence            999999963     8999999999999999999994   5899999999999998632 4668999999986532     


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCch--hhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVH--ESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                      ...+||+.|+|||++.+..|+.++|||||||++|||+||+.||.......  ......+...    ... ...+. ....
T Consensus       221 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~----~~~-~~~~~-~~~~  294 (400)
T 1nxk_A          221 TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMG----QYE-FPNPE-WSEV  294 (400)
T ss_dssp             ------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHT----CCC-CCTTT-TTTS
T ss_pred             ccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcC----ccc-CCCcc-cccC
Confidence            23468999999999999999999999999999999999999997643221  1111111110    000 01110 0111


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      +      .++.+++.+||+.||++|||+.||++.
T Consensus       295 s------~~~~~li~~~L~~dP~~Rpt~~eil~h  322 (400)
T 1nxk_A          295 S------EEVKMLIRNLLKTEPTQRMTITEFMNH  322 (400)
T ss_dssp             C------HHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             C------HHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            1      246678889999999999999999863

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=4e-36  Score=324.39  Aligned_cols=240  Identities=20%  Similarity=0.345  Sum_probs=191.3

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .....+|+|++|.||+++. .++..||+|++.... ...+++.+|+..+.+ ++|||||++++++.+++..++||||+++
T Consensus        13 ~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~   89 (269)
T 4hcu_A           13 TFVQEIGSGQFGLVHLGYW-LNKDKVAIKTIREGA-MSEEDFIEEAEVMMK-LSHPKLVQLYGVCLEQAPICLVFEFMEH   89 (269)
T ss_dssp             EEEEEEEECSSCEEEEEEE-TTTEEEEEEEECTTS-BCHHHHHHHHHHHHT-CCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred             eeeheecCCCccEEEEEEe-cCCCeEEEEEecccc-cCHHHHHHHHHHHHh-CCCCCEeeEEEEEecCCceEEEEEeCCC
Confidence            3445678999999999998 578889999886432 334568888888888 6999999999999999999999999999


Q ss_pred             CCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-------C
Q 002105          766 KELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-------D  834 (966)
Q Consensus       766 g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-------~  834 (966)
                      |+|.++++.    +++..+..++.|+++||+|||   +.+|+||||||+||+++.+  ..+++.|||.+...       .
T Consensus        90 ~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~--~~~kl~Dfg~~~~~~~~~~~~~  164 (269)
T 4hcu_A           90 GCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGEN--QVIKVSDFGMTRFVLDDQYTSS  164 (269)
T ss_dssp             CBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGG--GCEEECCTTGGGGBCCHHHHST
T ss_pred             CcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcchheEEEcCC--CCEEeccccccccccccccccc
Confidence            999999963    899999999999999999999   4589999999999999865  45789999987532       2


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      ....+|+.|+|||.+.+..++.++||||+||++|||+| |+.||....  .....+...   ...      .+......+
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~--~~~~~~~~~---~~~------~~~~~~~~~  233 (269)
T 4hcu_A          165 TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS--NSEVVEDIS---TGF------RLYKPRLAS  233 (269)
T ss_dssp             TSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--HHHHHHHHH---TTC------CCCCCTTSC
T ss_pred             cCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCC--HHHHHHHHh---cCc------cCCCCCcCC
Confidence            23456778999999998899999999999999999999 999987532  111111111   110      111111111


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESC  950 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~  950 (966)
                            .++.+++.+|++.||++|||++|+++.|+++
T Consensus       234 ------~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l  264 (269)
T 4hcu_A          234 ------THVYQIMNHCWRERPEDRPAFSRLLRQLAEI  264 (269)
T ss_dssp             ------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHccCCcccCcCHHHHHHHHHHH
Confidence                  2466788899999999999999999999983

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=5.7e-36  Score=337.16  Aligned_cols=244  Identities=19%  Similarity=0.267  Sum_probs=185.3

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      +.....+|+|++|.||+++...++..||||++.... ...+.+.+|+..+.+ ++|||||++++++.+++..++||||++
T Consensus        22 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~-l~hpniv~~~~~~~~~~~~~lv~e~~~   99 (361)
T 3uc3_A           22 YDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRS-LRHPNIVRFKEVILTPTHLAIIMEYAS   99 (361)
T ss_dssp             EEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-TSCHHHHHHHHHHHH-CCCTTBCCEEEEEECSSEEEEEEECCC
T ss_pred             EEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-cccHHHHHHHHHHHh-CCCCCCCcEEEEEeeCCEEEEEEEeCC
Confidence            445566899999999999998899999999986533 233557788877777 799999999999999999999999999


Q ss_pred             CCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-----CCC
Q 002105          765 GKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-----DSK  836 (966)
Q Consensus       765 ~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-----~~~  836 (966)
                      +|+|.+++.   .+++.....++.|+++||+|||   +.+|+||||||+||+++.+...+++++|||++...     ...
T Consensus       100 ~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~~~~  176 (361)
T 3uc3_A          100 GGELYERICNAGRFSEDEARFFFQQLLSGVSYCH---SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKS  176 (361)
T ss_dssp             SCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC-----------
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCceEEEeecCccccccccCCCCC
Confidence            999999985   4899999999999999999999   45899999999999999877777999999987532     233


Q ss_pred             CcCCcccccccccCCCCCCCc-chHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          837 SINSSAYVAPETKESKDITEK-GDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~-~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ..||+.|+|||++.+..++.+ +|||||||++|||+||+.||....... ...+......... ..  ..+  ....+  
T Consensus       177 ~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-~~~~~~~~~~~~~-~~--~~~--~~~~s--  248 (361)
T 3uc3_A          177 TVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPR-DYRKTIQRILSVK-YS--IPD--DIRIS--  248 (361)
T ss_dssp             ----CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CC-CHHHHHHHHHTTC-CC--CCT--TSCCC--
T ss_pred             CcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHH-HHHHHHHHHhcCC-CC--CCC--cCCCC--
Confidence            568999999999988887665 899999999999999999997542211 1112222111110 00  000  00111  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                          .++.+++.+|++.||++|||+.|+++
T Consensus       249 ----~~~~~li~~~L~~dP~~Rps~~ell~  274 (361)
T 3uc3_A          249 ----PECCHLISRIFVADPATRISIPEIKT  274 (361)
T ss_dssp             ----HHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             ----HHHHHHHHHHccCChhHCcCHHHHHh
Confidence                24667888999999999999999975

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=1.6e-36  Score=327.60  Aligned_cols=243  Identities=21%  Similarity=0.324  Sum_probs=185.0

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecC--CeeEEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--KAAYLVYE  761 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--~~~~lv~E  761 (966)
                      .....+|+|++|.||+|+.  .+..||||++....  ....+.|.+|+..+.+ ++|||||++++++.++  +..++|||
T Consensus        13 ~~~~~lg~G~~g~V~~~~~--~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~~lv~e   89 (271)
T 3kmu_A           13 NFLTKLNENHSGELWKGRW--QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRI-FSHPNVLPVLGACQSPPAPHPTLITH   89 (271)
T ss_dssp             EEEEEEEEETTEEEEEEEE--TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCC-CSCTTEECEEEEECTTTSSSCEEEEE
T ss_pred             HHHHHhcCCCcceEEEEEE--CCeeEEEEEecccccCHHHHHHHHHHHHHHHh-cCCCchhheEEEEccCCCCCeEeeec
Confidence            3445678999999999997  48899999986542  2223457778777776 6999999999999887  78899999


Q ss_pred             ccCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCC
Q 002105          762 YIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSK  836 (966)
Q Consensus       762 y~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~  836 (966)
                      |+++|+|.++++.     +++..+..++.|+++||+|||.. .++|+||||||+||+++.+...+++..+++.+. ....
T Consensus        90 ~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~-~~~~  167 (271)
T 3kmu_A           90 WMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTL-EPLIPRHALNSRSVMIDEDMTARISMADVKFSF-QSPG  167 (271)
T ss_dssp             CCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTS-SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTT-SCTT
T ss_pred             ccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC-CCceecCCCccceEEEcCCcceeEEeccceeee-cccC
Confidence            9999999999973     79999999999999999999954 233999999999999998766555544444432 2334


Q ss_pred             CcCCcccccccccCCCCCCC---cchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          837 SINSSAYVAPETKESKDITE---KGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~---~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      ..+|+.|+|||.+.+..++.   ++|||||||++|||+||+.||..... .+..    .......     ..+.+....+
T Consensus       168 ~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~-~~~~----~~~~~~~-----~~~~~~~~~~  237 (271)
T 3kmu_A          168 RMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSN-MEIG----MKVALEG-----LRPTIPPGIS  237 (271)
T ss_dssp             CBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCH-HHHH----HHHHHSC-----CCCCCCTTCC
T ss_pred             ccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccCh-HHHH----HHHHhcC-----CCCCCCCCCC
Confidence            57899999999988766554   79999999999999999999875321 1111    1111111     1111222222


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                            .++.+++..||+.||++|||++||++.|++
T Consensus       238 ------~~~~~li~~~l~~~p~~Rps~~~il~~L~~  267 (271)
T 3kmu_A          238 ------PHVSKLMKICMNEDPAKRPKFDMIVPILEK  267 (271)
T ss_dssp             ------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHcCCChhhCcCHHHHHHHHHH
Confidence                  246677889999999999999999999998

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=4.9e-36  Score=345.66  Aligned_cols=242  Identities=21%  Similarity=0.268  Sum_probs=188.4

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .....+|+|+||.||++....+|..+|+|++.....  ...+.+.+|+..+.+ ++|||||++++++.+++..|+|||||
T Consensus        14 ~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~-l~hpnIv~l~~~~~~~~~~~lv~E~~   92 (444)
T 3soa_A           14 QLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRL-LKHPNIVRLHDSISEEGHHYLIFDLV   92 (444)
T ss_dssp             EEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHH-CCBTTBCCEEEEEECSSEEEEEECCC
T ss_pred             EEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHh-CCCcCCCeEEEEEEECCEEEEEEEeC
Confidence            345567899999999999989999999999865432  223456778877777 69999999999999999999999999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC-CCceEEEeccccceecC-----
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK-DEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~-~~~~~~~~~~~~~~~~~-----  834 (966)
                      ++|+|.+++.   .+++.....++.||+.||+|||   +.+|+||||||+|||++.+ ....++++|||++....     
T Consensus        93 ~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH---~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~  169 (444)
T 3soa_A           93 TGGELFEDIVAREYYSEADASHCIQQILEAVLHCH---QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQA  169 (444)
T ss_dssp             BCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCB
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCce
Confidence            9999999885   4899999999999999999999   4589999999999999864 34568999999985432     


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                       ....||+.|+|||++.+..|+.++||||+||++|||++|+.||....  ...+.+.+...    ... +..+.. ...+
T Consensus       170 ~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~--~~~~~~~i~~~----~~~-~~~~~~-~~~s  241 (444)
T 3soa_A          170 WFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDED--QHRLYQQIKAG----AYD-FPSPEW-DTVT  241 (444)
T ss_dssp             CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHT----CCC-CCTTTT-TTSC
T ss_pred             eecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCcc--HHHHHHHHHhC----CCC-CCcccc-ccCC
Confidence             23478999999999999999999999999999999999999997542  11111211111    100 011111 1111


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                            .++.+++.+|++.||++|||+.|+++
T Consensus       242 ------~~~~~li~~~L~~dP~~Rpta~e~L~  267 (444)
T 3soa_A          242 ------PEAKDLINKMLTINPSKRITAAEALK  267 (444)
T ss_dssp             ------HHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             ------HHHHHHHHHHcCCChhHCCCHHHHhc
Confidence                  24667788999999999999999875

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=2.2e-36  Score=336.23  Aligned_cols=244  Identities=17%  Similarity=0.270  Sum_probs=184.5

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEE----EEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQF----VVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~v----avk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      +.....+|+|++|.||+|+...++..+    |+|++.... ....++|.+|+..+.+ ++|||||+++++|.+++ .++|
T Consensus        17 y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~-~~~v   94 (327)
T 3poz_A           17 FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMAS-VDNPHVCRLLGICLTST-VQLI   94 (327)
T ss_dssp             EEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHH-CCBTTBCCEEEEEESSS-EEEE
T ss_pred             cccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHh-CCCCCEeEEEEEEecCC-eEEE
Confidence            445566799999999999987777654    666654332 2334567888888877 69999999999998755 7899


Q ss_pred             EEccCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-
Q 002105          760 YEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-  834 (966)
                      |||+++|+|.++++.    +++..+..++.||++||+|||.   .+|+||||||+||+++.+.  .++++|||++.... 
T Consensus        95 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIll~~~~--~~kl~Dfg~a~~~~~  169 (327)
T 3poz_A           95 TQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQ--HVKITDFGLAKLLGA  169 (327)
T ss_dssp             EECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETT--EEEECCTTHHHHHTT
T ss_pred             EEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCChheEEECCCC--CEEEccCcceeEccC
Confidence            999999999999963    8999999999999999999994   5899999999999998654  68999999875421 


Q ss_pred             -------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccc
Q 002105          835 -------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDP  906 (966)
Q Consensus       835 -------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  906 (966)
                             ....+|+.|+|||++.+..++.++|||||||++|||+| |+.||.....  ..+.+....   ....   .  
T Consensus       170 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~~~~---~~~~---~--  239 (327)
T 3poz_A          170 EEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA--SEISSILEK---GERL---P--  239 (327)
T ss_dssp             TCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGHHHHHHT---TCCC---C--
T ss_pred             CcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCH--HHHHHHHHc---CCCC---C--
Confidence                   12345778999999999999999999999999999999 9999975422  222222211   1100   0  


Q ss_pred             cccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          907 FIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       907 ~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                       .....      ..++.+++.+||+.||++||+|+||++.|+++.+
T Consensus       240 -~~~~~------~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~  278 (327)
T 3poz_A          240 -QPPIC------TIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  278 (327)
T ss_dssp             -CCTTB------CHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred             -CCccC------CHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence             01111      1356778899999999999999999999998554

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=2.6e-36  Score=334.69  Aligned_cols=240  Identities=20%  Similarity=0.346  Sum_probs=187.1

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .....+|+|++|.||+|+...++..||||++...... ..+.+.+|+..+.+ ++|||||++++++.+++..|+||||++
T Consensus        10 ~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~hpnIv~~~~~~~~~~~~~lv~e~~~   88 (323)
T 3tki_A           10 DLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKM-LNHENVVKFYGHRREGNIQYLFLEYCS   88 (323)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHH-CCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             eeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHh-CCCCCCCeEEEEEecCCeEEEEEEcCC
Confidence            3455679999999999999889999999998644322 23567777777766 799999999999999999999999999


Q ss_pred             CCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec--------
Q 002105          765 GKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT--------  833 (966)
Q Consensus       765 ~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~--------  833 (966)
                      +|+|.++++   .+++..+..++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||.+...        
T Consensus        89 ~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~--~~kl~Dfg~a~~~~~~~~~~~  163 (323)
T 3tki_A           89 GGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERL  163 (323)
T ss_dssp             TEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTC--CEEECCCTTCEECEETTEECC
T ss_pred             CCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccccchHHEEEeCCC--CEEEEEeeccceeccCCcccc
Confidence            999999986   4899999999999999999999   45899999999999999654  5789999988532        


Q ss_pred             CCCCcCCcccccccccCCCCC-CCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          834 DSKSINSSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       834 ~~~~~~~~~y~aPE~~~~~~~-~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                      .....||+.|+|||++.+..+ +.++|||||||++|||+||+.||............|...   ...    .++.  ...
T Consensus       164 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~---~~~----~~~~--~~~  234 (323)
T 3tki_A          164 LNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEK---KTY----LNPW--KKI  234 (323)
T ss_dssp             BCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTT---CTT----STTG--GGS
T ss_pred             cCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcc---ccc----CCcc--ccC
Confidence            124578999999999887775 779999999999999999999997643322222222211   000    1110  011


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                         .   .++.+++.+|++.||++|||+.|+++.
T Consensus       235 ---~---~~~~~li~~~L~~dP~~R~t~~eil~h  262 (323)
T 3tki_A          235 ---D---SAPLALLHKILVENPSARITIPDIKKD  262 (323)
T ss_dssp             ---C---HHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             ---C---HHHHHHHHHHccCChhhCcCHHHHhhC
Confidence               1   245678889999999999999999753

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=4e-36  Score=335.30  Aligned_cols=237  Identities=19%  Similarity=0.303  Sum_probs=188.2

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ......+|+|++|.||+|+...+|+.||+|++....   ....+.+..|...+.+..+|||||++++++.+++..|+|||
T Consensus        19 y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~lv~E   98 (345)
T 1xjd_A           19 FILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVME   98 (345)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEE
T ss_pred             eEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEEEEEe
Confidence            344556789999999999998899999999986532   12233466777777765599999999999999999999999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-----
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-----  833 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-----  833 (966)
                      |++||+|.++++   .+++..+..++.||+.||+|||.   .+|+||||||+||+++.++  +++++|||++...     
T Consensus        99 ~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g--~vkL~DFG~a~~~~~~~~  173 (345)
T 1xjd_A           99 YLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDKDG--HIKIADFGMCKENMLGDA  173 (345)
T ss_dssp             CCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTS--CEEECCCTTCBCCCCTTC
T ss_pred             CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCChhhEEECCCC--CEEEeEChhhhhcccCCC
Confidence            999999999996   48999999999999999999994   5899999999999998654  6899999987642     


Q ss_pred             -CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          834 -DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       834 -~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                       ....+||+.|+|||++.+..++.++|||||||++|||+||+.||.+..  ...+.+.+..   .       .+......
T Consensus       174 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~--~~~~~~~i~~---~-------~~~~p~~~  241 (345)
T 1xjd_A          174 KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQD--EEELFHSIRM---D-------NPFYPRWL  241 (345)
T ss_dssp             CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHH---C-------CCCCCTTS
T ss_pred             cccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCC--HHHHHHHHHh---C-------CCCCCccc
Confidence             234578999999999999999999999999999999999999997542  1212121111   1       11111112


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHH-HHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCAS-DVT  944 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~-~v~  944 (966)
                      +      .++.+++.+|++.||++||++. ||.
T Consensus       242 s------~~~~~li~~lL~~dp~~R~~~~~~i~  268 (345)
T 1xjd_A          242 E------KEAKDLLVKLFVREPEKRLGVRGDIR  268 (345)
T ss_dssp             C------HHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             C------HHHHHHHHHHhcCCHhHcCCChHHHH
Confidence            2      2456778899999999999997 654

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=7.1e-36  Score=330.50  Aligned_cols=244  Identities=20%  Similarity=0.276  Sum_probs=187.0

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCHH
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS  769 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L~  769 (966)
                      .+|+|++|.||+|+...++..||||++........+.+.+|+..+.++.+|||||++++++.+++..|+||||+++|+|.
T Consensus        20 ~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   99 (316)
T 2ac3_A           20 VLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSIL   99 (316)
T ss_dssp             CCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTCBHH
T ss_pred             eecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEcCCCCcHH
Confidence            46999999999999988999999999876554445668889988888668999999999999999999999999999999


Q ss_pred             HHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC-ceEEEeccccceecC-----------
Q 002105          770 EVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTD-----------  834 (966)
Q Consensus       770 ~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~-~~~~~~~~~~~~~~~-----------  834 (966)
                      +++.   .+++..+..++.||++||+|||.   .+|+||||||+||+++.+.. ..++++|||++....           
T Consensus       100 ~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  176 (316)
T 2ac3_A          100 SHIHKRRHFNELEASVVVQDVASALDFLHN---KGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTP  176 (316)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC--------------
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCcccccccc
Confidence            9996   38999999999999999999994   58999999999999987543 347899999875321           


Q ss_pred             --CCCcCCcccccccccCC-----CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCch------h---h-HHHHHHHhhcc
Q 002105          835 --SKSINSSAYVAPETKES-----KDITEKGDIYGFGLILIDLLTGKSPADADFGVH------E---S-IVEWARYCYSD  897 (966)
Q Consensus       835 --~~~~~~~~y~aPE~~~~-----~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~------~---~-~~~~~~~~~~~  897 (966)
                        ....||+.|+|||++.+     ..++.++|||||||++|||+||+.||.......      +   . ....... ...
T Consensus       177 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~  255 (316)
T 2ac3_A          177 ELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFES-IQE  255 (316)
T ss_dssp             -----CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHH-HHH
T ss_pred             ccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHH-Hhc
Confidence              12358999999999864     568899999999999999999999997643211      0   0 0000111 000


Q ss_pred             CcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          898 CHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       898 ~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .... +.++ .....      ..++.+++.+|++.||++|||++|+++
T Consensus       256 ~~~~-~~~~-~~~~~------~~~~~~li~~~L~~dP~~Rps~~e~l~  295 (316)
T 2ac3_A          256 GKYE-FPDK-DWAHI------SCAAKDLISKLLVRDAKQRLSAAQVLQ  295 (316)
T ss_dssp             CCCC-CCHH-HHTTS------CHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             cCcc-cCch-hcccC------CHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence            1000 0000 00111      135677888999999999999999976

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.4e-36  Score=329.95  Aligned_cols=235  Identities=20%  Similarity=0.274  Sum_probs=183.7

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      +.....+|+|++|.||+|+...+|..||||++.....  .....+..|+..+.+..+|||||+++++|.+++..++||||
T Consensus        59 y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~e~  138 (311)
T 3p1a_A           59 FQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTEL  138 (311)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             eeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEEec
Confidence            3445567999999999999988999999998754322  22334567777777766999999999999999999999999


Q ss_pred             cCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          763 IEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       763 ~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      + +|+|.+++..    ++|..+..++.|++.||+|||.   .+|+||||||+|||++.+.  .++++|||++....    
T Consensus       139 ~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~--~~kl~DFG~a~~~~~~~~  212 (311)
T 3p1a_A          139 C-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHS---QGLVHLDVKPANIFLGPRG--RCKLGDFGLLVELGTAGA  212 (311)
T ss_dssp             C-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECGGG--CEEECCCTTCEECC----
T ss_pred             c-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEECCCC--CEEEccceeeeecccCCC
Confidence            9 6799998863    9999999999999999999994   5899999999999998654  57899999876532    


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                       ....||++|+|||++.+ .++.++|||||||++|||++|..|+...    .   .|...  ....    ..+......+
T Consensus       213 ~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~----~---~~~~~--~~~~----~~~~~~~~~~  278 (311)
T 3p1a_A          213 GEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGG----E---GWQQL--RQGY----LPPEFTAGLS  278 (311)
T ss_dssp             --CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH----H---HHHHH--TTTC----CCHHHHTTSC
T ss_pred             CcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc----c---HHHHH--hccC----CCcccccCCC
Confidence             23468999999998876 7899999999999999999997775431    1   11111  1111    1111111222


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                            .++.+++.+|++.||++|||++|+++
T Consensus       279 ------~~l~~li~~~L~~dP~~Rpt~~ell~  304 (311)
T 3p1a_A          279 ------SELRSVLVMMLEPDPKLRATAEALLA  304 (311)
T ss_dssp             ------HHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ------HHHHHHHHHHcCCChhhCcCHHHHHh
Confidence                  35667888999999999999999986

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=5.4e-36  Score=348.17  Aligned_cols=240  Identities=17%  Similarity=0.333  Sum_probs=190.8

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|+|+||.||+|+. .++..||||++.... ...++|.+|+..+.+ ++|||||++++++. ++..|+|||||++|
T Consensus       192 ~~~~lG~G~fg~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~-l~h~~iv~l~~~~~-~~~~~lv~e~~~~g  267 (454)
T 1qcf_A          192 LEKKLGAGQFGEVWMATY-NKHTKVAVKTMKPGS-MSVEAFLAEANVMKT-LQHDKLVKLHAVVT-KEPIYIITEFMAKG  267 (454)
T ss_dssp             EEEEEECCSSEEEEEEEE-TTTEEEEEEEECTTS-BCHHHHHHHHHHHTT-CCCTTBCCEEEEEC-SSSCEEEECCCTTC
T ss_pred             EEEEcccCCceEEEEEEE-CCccEEEEEEecCCC-ccHHHHHHHHHHHhh-CCCCCEeeEEEEEe-CCccEEEEeecCCC
Confidence            344579999999999997 667889999986533 345678888888877 69999999999987 56789999999999


Q ss_pred             CHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-------
Q 002105          767 ELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------  834 (966)
Q Consensus       767 ~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-------  834 (966)
                      +|.++++     .+++..+.+++.|||.||+|||.   .+|+||||||+|||++.+.  .++++|||++....       
T Consensus       268 ~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~--~~kl~DFG~a~~~~~~~~~~~  342 (454)
T 1qcf_A          268 SLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASL--VCKIADFGLARVIEDNEYTAR  342 (454)
T ss_dssp             BHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEEECTTC--CEEECSTTGGGGBCCHHHHTT
T ss_pred             cHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCHHHEEECCCC--cEEEeeCCCceEcCCCceecc
Confidence            9999996     48899999999999999999994   5899999999999999654  57899999986422       


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      ....+++.|+|||++....++.++|||||||++|||+| |+.||.+..  ...+.+.+..   ....   ..   ...++
T Consensus       343 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~--~~~~~~~i~~---~~~~---~~---~~~~~  411 (454)
T 1qcf_A          343 EGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMS--NPEVIRALER---GYRM---PR---PENCP  411 (454)
T ss_dssp             CSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--HHHHHHHHHH---TCCC---CC---CTTSC
T ss_pred             CCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHc---CCCC---CC---CCCCC
Confidence            23345778999999998899999999999999999999 999987532  1222122211   1111   01   11122


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                            .++.+++.+||+.||++||||++|+++|++...
T Consensus       412 ------~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~  444 (454)
T 1qcf_A          412 ------EELYNIMMRCWKNRPEERPTFEYIQSVLDDFYT  444 (454)
T ss_dssp             ------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSS
T ss_pred             ------HHHHHHHHHHccCChhHCcCHHHHHHHHHHHHh
Confidence                  356778899999999999999999999999544

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=5.3e-36  Score=335.91  Aligned_cols=240  Identities=19%  Similarity=0.310  Sum_probs=178.2

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|+|++|.||+|+...+++.||||++....  ..+.+.+|+..+.+ ++|||||+++++|..++..++||||+++|
T Consensus        57 ~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~lv~e~~~~~  133 (349)
T 2w4o_A           57 VESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLR-LSHPNIIKLKEIFETPTEISLVLELVTGG  133 (349)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHH-CCCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             EeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHh-CCCCCCcceeeeEecCCeEEEEEEeCCCC
Confidence            3445789999999999998889999999986542  34557778888877 69999999999999999999999999999


Q ss_pred             CHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcC-CCCceEEEeccccceecC-----CCC
Q 002105          767 ELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDG-KDEPHLRLSVPGLAYCTD-----SKS  837 (966)
Q Consensus       767 ~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~-~~~~~~~~~~~~~~~~~~-----~~~  837 (966)
                      +|.+++..   +++.++..++.|+++||+|||.   .+|+||||||+||+++. +....++++|||++....     ...
T Consensus       134 ~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~  210 (349)
T 2w4o_A          134 ELFDRIVEKGYYSERDAADAVKQILEAVAYLHE---NGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTV  210 (349)
T ss_dssp             BHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESSSSTTCCEEECCCC--------------
T ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCcccEEEecCCCCCCEEEccCccccccCcccccccc
Confidence            99999963   7999999999999999999994   58999999999999975 334668999999876432     234


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      .||+.|+|||++.+..++.++|||||||++|||+||+.||.......... +..   .. ... ....+.. ...+    
T Consensus       211 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~-~~i---~~-~~~-~~~~~~~-~~~~----  279 (349)
T 2w4o_A          211 CGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMF-RRI---LN-CEY-YFISPWW-DEVS----  279 (349)
T ss_dssp             --CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHH-HHH---HT-TCC-CCCTTTT-TTSC----
T ss_pred             cCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHH-HHH---Hh-CCC-ccCCchh-hhCC----
Confidence            68999999999999999999999999999999999999997543222111 111   11 111 0011111 1111    


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                        .++.+++.+|++.||++|||+.|+++
T Consensus       280 --~~~~~li~~~L~~dP~~Rpt~~e~l~  305 (349)
T 2w4o_A          280 --LNAKDLVRKLIVLDPKKRLTTFQALQ  305 (349)
T ss_dssp             --HHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             --HHHHHHHHHHccCChhhCcCHHHHhc
Confidence              25667888999999999999999875

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=2.3e-35  Score=326.90  Aligned_cols=258  Identities=15%  Similarity=0.144  Sum_probs=193.2

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCC--eeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK--AAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~--~~~lv~Ey~  763 (966)
                      ....+|+|++|.||+|+...++..||||++..... ...+.+.+|+..+.+ ++|||||++++++...+  ..++||||+
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~~lv~e~~   91 (319)
T 4euu_A           13 LSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKK-LNHKNIVKLFAIEEETTTRHKVLIMEFC   91 (319)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHH-CCCTTBCCEEEEEECTTTCCEEEEEECC
T ss_pred             EEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHh-cCCCCcceEEEEeecCCCceEEEEEeCC
Confidence            34457899999999999988899999999865432 223456778877777 69999999999998755  789999999


Q ss_pred             CCCCHHHHHHc------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEE--cCCCCceEEEeccccceecC-
Q 002105          764 EGKELSEVLRN------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV--DGKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       764 ~~g~L~~~l~~------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill--~~~~~~~~~~~~~~~~~~~~-  834 (966)
                      ++|+|.++++.      +++..+..++.|+++||+|||   +.+|+||||||+||++  +.+....++++|||.+.... 
T Consensus        92 ~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~  168 (319)
T 4euu_A           92 PCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELED  168 (319)
T ss_dssp             TTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCT
T ss_pred             CCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEeccCCCCceEEEccCCCceecCC
Confidence            99999999974      899999999999999999999   4589999999999998  12244568999999986532 


Q ss_pred             ----CCCcCCcccccccccC--------CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCch---hhHHHHHHHhhccCc
Q 002105          835 ----SKSINSSAYVAPETKE--------SKDITEKGDIYGFGLILIDLLTGKSPADADFGVH---ESIVEWARYCYSDCH  899 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~--------~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~---~~~~~~~~~~~~~~~  899 (966)
                          ....||+.|+|||++.        +..++.++|||||||++|||+||+.||.......   +.+........ ...
T Consensus       169 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p-~~~  247 (319)
T 4euu_A          169 DEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKP-SGA  247 (319)
T ss_dssp             TCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCC-TTC
T ss_pred             CCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCC-ccc
Confidence                2346899999999875        5788999999999999999999999997533221   11212111111 000


Q ss_pred             cccc---------ccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          900 LDTW---------VDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       900 ~~~~---------~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      ...+         .++.+.............+.+++.+|++.||++|||++|+++...+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d  306 (319)
T 4euu_A          248 ISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSD  306 (319)
T ss_dssp             CEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHH
T ss_pred             chhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHH
Confidence            0000         0001111111113344556788899999999999999999998877

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=3e-36  Score=337.79  Aligned_cols=252  Identities=15%  Similarity=0.190  Sum_probs=185.6

Q ss_pred             ccccccCCCCCccEEEEEEEec---CCcEEEEEEEeccCcc-----------cccchHHHHHHHHhhcCCCceeEEeeEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLA---NDMQFVVKKIIDVNTI-----------TTSSFWPDVSQFGKLIMHPNIVRLHGVC  750 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~---~~~~vavk~~~~~~~~-----------~~~~~~~e~~~~~~~~~H~niv~l~g~~  750 (966)
                      +.....+|+|++|.||+|+...   ++..+|||+.......           ....+.+|+..+.+ ++|||||++++++
T Consensus        39 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~-l~h~ni~~~~~~~  117 (345)
T 2v62_A           39 WVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQ-LDYLGIPLFYGSG  117 (345)
T ss_dssp             EEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHT-CSCCCCCCEEEEE
T ss_pred             EEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhcc-ccccCcceeeccc
Confidence            3445567999999999999866   7789999988654321           12234555555555 6999999999999


Q ss_pred             ec----CCeeEEEEEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEE
Q 002105          751 RS----EKAAYLVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR  823 (966)
Q Consensus       751 ~~----~~~~~lv~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~  823 (966)
                      ..    ++..|+||||+ +|+|.++++   .+++.++..++.||+.||+|||   +.+|+||||||+||+++.+....++
T Consensus       118 ~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~k  193 (345)
T 2v62_A          118 LTEFKGRSYRFMVMERL-GIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIH---ENEYVHGDIKAANLLLGYKNPDQVY  193 (345)
T ss_dssp             EEESSSCEEEEEEEECE-EEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEESSSTTSEE
T ss_pred             ccccCCCcEEEEEEecc-CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCcCHHHEEEccCCCCcEE
Confidence            87    77899999999 999999986   4899999999999999999999   4599999999999999977656789


Q ss_pred             EeccccceecC-------------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHH
Q 002105          824 LSVPGLAYCTD-------------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEW  890 (966)
Q Consensus       824 ~~~~~~~~~~~-------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~  890 (966)
                      ++|||++....             ....||+.|+|||++.+..++.++|||||||++|||+||+.||.............
T Consensus       194 L~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~  273 (345)
T 2v62_A          194 LADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTA  273 (345)
T ss_dssp             ECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHH
T ss_pred             EEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHH
Confidence            99999985421             23468999999999999999999999999999999999999996533222222111


Q ss_pred             HHHhhccCccccccccccc-CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          891 ARYCYSDCHLDTWVDPFIR-GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       891 ~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      .......  ....+..... ...+      .++.+++.+||+.||++||++++|++.|++
T Consensus       274 ~~~~~~~--~~~~~~~~~~~~~~~------~~l~~li~~~l~~dp~~Rps~~~l~~~L~~  325 (345)
T 2v62_A          274 KTNLLDE--LPQSVLKWAPSGSSC------CEIAQFLVCAHSLAYDEKPNYQALKKILNP  325 (345)
T ss_dssp             HHHHHHT--TTHHHHHHSCTTSCC------HHHHHHHHHHHTCCTTCCCCHHHHHHHHCT
T ss_pred             HHhhccc--ccHHHHhhccccccH------HHHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence            1111110  0000000000 0111      256677889999999999999999999998

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=5.8e-36  Score=322.90  Aligned_cols=242  Identities=22%  Similarity=0.341  Sum_probs=191.6

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .....+|+|++|.||+++. .++..||+|++.... ...+++.+|+..+.+ ++|||||++++++..++..++||||+++
T Consensus        11 ~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~   87 (268)
T 3sxs_A           11 TLLKELGSGQFGVVKLGKW-KGQYDVAVKMIKEGS-MSEDEFFQEAQTMMK-LSHPKLVKFYGVCSKEYPIYIVTEYISN   87 (268)
T ss_dssp             EEEEEEEEETTEEEEEEEE-TTTEEEEEEEECBTT-BCHHHHHHHHHHHHH-CCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred             eeeeeeccCCCceEEEEEe-cCceeEEEEEeccCC-CcHHHHHHHHHHHHh-CCCCCEeeEEEEEccCCceEEEEEccCC
Confidence            3455678999999999987 677789999886433 334568888888888 6999999999999999999999999999


Q ss_pred             CCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-------
Q 002105          766 KELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------  834 (966)
Q Consensus       766 g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-------  834 (966)
                      |+|.++++.    +++..+..++.|++.||+|||   ..+|+||||||+||+++.+.  .++++|||.+....       
T Consensus        88 ~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~--~~~l~Dfg~~~~~~~~~~~~~  162 (268)
T 3sxs_A           88 GCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLAARNCLVDRDL--CVKVSDFGMTRYVLDDQYVSS  162 (268)
T ss_dssp             CBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCSGGGEEECTTC--CEEECCTTCEEECCTTCEEEC
T ss_pred             CcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCcceEEECCCC--CEEEccCccceecchhhhhcc
Confidence            999999863    899999999999999999999   45899999999999998654  57899999876432       


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      ....+|+.|+|||.+.+..++.++||||||+++|||+| |+.||..... .+.. ...   ......   ..|   ...+
T Consensus       163 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-~~~~-~~~---~~~~~~---~~~---~~~~  231 (268)
T 3sxs_A          163 VGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTN-SEVV-LKV---SQGHRL---YRP---HLAS  231 (268)
T ss_dssp             CSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCH-HHHH-HHH---HTTCCC---CCC---TTSC
T ss_pred             cCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccCh-HHHH-HHH---HcCCCC---CCC---CcCh
Confidence            22345678999999998889999999999999999999 9999865321 1111 111   111100   111   1111


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                            .++.+++..|++.||++|||++|+++.|++ ++.
T Consensus       232 ------~~l~~li~~~l~~~p~~Rps~~~ll~~L~~-l~~  264 (268)
T 3sxs_A          232 ------DTIYQIMYSCWHELPEKRPTFQQLLSSIEP-LRE  264 (268)
T ss_dssp             ------HHHHHHHHHTTCSSGGGSCCHHHHHHHHGG-GCC
T ss_pred             ------HHHHHHHHHHcCCChhhCcCHHHHHHHHHH-hhh
Confidence                  246678889999999999999999999998 554

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=3.3e-36  Score=353.35  Aligned_cols=244  Identities=20%  Similarity=0.328  Sum_probs=194.8

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .....+|+|+||.||+|+...++..||||++... ....++|.+|+..+.+ ++|||||+++|+|..++..|+|||||++
T Consensus       223 ~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~-l~hpniv~l~~~~~~~~~~~lv~E~~~~  300 (495)
T 1opk_A          223 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKE-IKHPNLVQLLGVCTREPPFYIITEFMTY  300 (495)
T ss_dssp             EEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSS-SSCHHHHHHHHHHHHH-CCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred             eeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCc-ccchHHHHHHHHHHHh-cCCCCEeeEEEEEecCCcEEEEEEccCC
Confidence            3345678999999999999777999999987543 2345678888888877 6999999999999999999999999999


Q ss_pred             CCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          766 KELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       766 g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      |+|.++++.     +++..+..++.||++||+|||   +.+|+||||||+|||++.+  ..++++|||++....      
T Consensus       301 g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~--~~~kl~DFG~a~~~~~~~~~~  375 (495)
T 1opk_A          301 GNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGEN--HLVKVADFGLSRLMTGDTYTA  375 (495)
T ss_dssp             CBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGG--GCEEECCTTCEECCTTCCEEC
T ss_pred             CCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEECCC--CcEEEeecccceeccCCceee
Confidence            999999963     789999999999999999999   4589999999999999865  457899999986432      


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                       ....+++.|+|||++....++.++|||||||++|||+| |+.||.+..  ...+.+.+....   ..      .....+
T Consensus       376 ~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~--~~~~~~~~~~~~---~~------~~~~~~  444 (495)
T 1opk_A          376 HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEKDY---RM------ERPEGC  444 (495)
T ss_dssp             CTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHHTTC---CC------CCCTTC
T ss_pred             cCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHcCC---CC------CCCCCC
Confidence             12345678999999998899999999999999999999 999987532  222223222111   10      111112


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      +      .++.+++.+||+.||++||||.||+++|+.++..
T Consensus       445 ~------~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~~  479 (495)
T 1opk_A          445 P------EKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE  479 (495)
T ss_dssp             C------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCSS
T ss_pred             C------HHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHhc
Confidence            2      3566788899999999999999999999985443

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=337.91  Aligned_cols=245  Identities=20%  Similarity=0.301  Sum_probs=191.8

Q ss_pred             ccccCCCCCccEEEEEEEecC-------CcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLAN-------DMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL  758 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~-------~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~l  758 (966)
                      ....+|+|++|.||+|+....       +..||||++..... ...+.+.+|++.+.++.+|||||+++++|..++..++
T Consensus        73 i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~l  152 (382)
T 3tt0_A           73 LGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYV  152 (382)
T ss_dssp             EEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             eeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCCceEE
Confidence            344578999999999997532       35799998865422 2235578888888884499999999999999999999


Q ss_pred             EEEccCCCCHHHHHHc-------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC
Q 002105          759 VYEYIEGKELSEVLRN-------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE  819 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~~-------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~  819 (966)
                      ||||+++|+|.++++.                   +++..+..++.||+.||+|||   +.+|+||||||+||+++.+. 
T Consensus       153 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~-  228 (382)
T 3tt0_A          153 IVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDN-  228 (382)
T ss_dssp             EEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTC-
T ss_pred             EEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCcceEEEcCCC-
Confidence            9999999999999963                   789999999999999999999   45899999999999999664 


Q ss_pred             ceEEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHH
Q 002105          820 PHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEW  890 (966)
Q Consensus       820 ~~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~  890 (966)
                       .++++|||++....        ....+|+.|+|||++.+..++.++|||||||++|||+| |+.||....  ...+.+.
T Consensus       229 -~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~--~~~~~~~  305 (382)
T 3tt0_A          229 -VMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP--VEELFKL  305 (382)
T ss_dssp             -CEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--HHHHHHH
T ss_pred             -cEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHH
Confidence             57899999886422        22346778999999999999999999999999999999 999986531  2222222


Q ss_pred             HHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          891 ARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       891 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      +.   ....      +......+      .++.+++.+||+.||++|||++||++.|++++..
T Consensus       306 ~~---~~~~------~~~~~~~~------~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~  353 (382)
T 3tt0_A          306 LK---EGHR------MDKPSNCT------NELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVAL  353 (382)
T ss_dssp             HH---TTCC------CCCCSSCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HH---cCCC------CCCCccCC------HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence            21   1111      11111122      2566788899999999999999999999986543

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=3.2e-36  Score=337.35  Aligned_cols=234  Identities=19%  Similarity=0.250  Sum_probs=183.2

Q ss_pred             cccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          684 TEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       684 ~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      ++.....+|+|++|.||+|+...+|..||||++....   ....+.+..|...+.+..+|||||++++++.+++..|+||
T Consensus        24 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lv~  103 (353)
T 3txo_A           24 NFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVM  103 (353)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             heEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEEEE
Confidence            3455667899999999999998899999999986532   1223345677777766447999999999999999999999


Q ss_pred             EccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----
Q 002105          761 EYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----  833 (966)
Q Consensus       761 Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----  833 (966)
                      |||+||+|.++++   .+++.....++.||+.||+|||.   .+|+||||||+|||++.++  +++++|||++...    
T Consensus       104 E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NILl~~~g--~ikL~DFG~a~~~~~~~  178 (353)
T 3txo_A          104 EFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHD---KGIIYRDLKLDNVLLDHEG--HCKLADFGMCKEGICNG  178 (353)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTS--CEEECCCTTCBCSCC--
T ss_pred             eCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH---CCCcccCCCHHHEEECCCC--CEEEccccceeecccCC
Confidence            9999999999986   48999999999999999999994   5899999999999998654  5899999987642    


Q ss_pred             --CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCC
Q 002105          834 --DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH  911 (966)
Q Consensus       834 --~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  911 (966)
                        ....+||+.|||||++.+..|+.++||||+||++|||+||+.||.+..  ...+.+.+   ....       +.....
T Consensus       179 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~--~~~~~~~i---~~~~-------~~~p~~  246 (353)
T 3txo_A          179 VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAEN--EDDLFEAI---LNDE-------VVYPTW  246 (353)
T ss_dssp             -------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHH---HHCC-------CCCCTT
T ss_pred             ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCC--HHHHHHHH---HcCC-------CCCCCC
Confidence              223578999999999998899999999999999999999999997542  11111111   1110       001111


Q ss_pred             CcchHHHHHHHHHHHHHccCCCCCCCCCH
Q 002105          912 VSSIQNEIVEIMNLALHCTAGDPTARPCA  940 (966)
Q Consensus       912 ~~~~~~~~~~~~~l~~~C~~~~P~~RPt~  940 (966)
                      .+      .++.+++.+|++.||++||++
T Consensus       247 ~~------~~~~~li~~lL~~dP~~R~~~  269 (353)
T 3txo_A          247 LH------EDATGILKSFMTKNPTMRLGS  269 (353)
T ss_dssp             SC------HHHHHHHHHHTCSSGGGSTTS
T ss_pred             CC------HHHHHHHHHHhhhCHHHccCC
Confidence            11      245667889999999999998

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=8.9e-36  Score=324.15  Aligned_cols=244  Identities=16%  Similarity=0.283  Sum_probs=190.8

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ......+|+|++|.||++.. .++..||+|++.... ...+++.+|+..+.+ ++|||||++++++.+++..++||||++
T Consensus        26 y~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~  102 (283)
T 3gen_A           26 LTFLKELGTGQFGVVKYGKW-RGQYDVAIKMIKEGS-MSEDEFIEEAKVMMN-LSHEKLVQLYGVCTKQRPIFIITEYMA  102 (283)
T ss_dssp             EEEEEECC---CEEEEEEEE-TTTEEEEEEEECTTS-BCHHHHHHHHHHHHT-CCCTTBCCEEEEECSSSSEEEEECCCT
T ss_pred             HHhHhhcCCCCCceEEEEEE-cCCCeEEEEEecCCC-CCHHHHHHHHHHHhc-CCCCCEeeEEEEEecCCCeEEEEeccC
Confidence            34456789999999999987 677789999886432 334568888888887 699999999999999999999999999


Q ss_pred             CCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-------
Q 002105          765 GKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-------  833 (966)
Q Consensus       765 ~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-------  833 (966)
                      +|+|.++++.    +++..+..++.|++.||+|||   +.+|+||||||+||+++.+.  .+++.|||.+...       
T Consensus       103 ~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nili~~~~--~~kl~Dfg~~~~~~~~~~~~  177 (283)
T 3gen_A          103 NGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQG--VVKVSDFGLSRYVLDDEYTS  177 (283)
T ss_dssp             TCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTS--CEEECSTTGGGGBCCHHHHS
T ss_pred             CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCccceEEEcCCC--CEEEcccccccccccccccc
Confidence            9999999963    899999999999999999999   45899999999999998654  5789999987542       


Q ss_pred             CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          834 DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       834 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                      .....+|+.|+|||++.+..++.++|||||||++|||+| |+.||....  .....+...   ...      .+......
T Consensus       178 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~--~~~~~~~~~---~~~------~~~~~~~~  246 (283)
T 3gen_A          178 SVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFT--NSETAEHIA---QGL------RLYRPHLA  246 (283)
T ss_dssp             TTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSC--HHHHHHHHH---TTC------CCCCCTTC
T ss_pred             ccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccC--hhHHHHHHh---ccc------CCCCCCcC
Confidence            223456788999999998889999999999999999999 999987532  111111111   110      11111111


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      +      .++.+++.+||+.||++|||++|+++.|++.+..
T Consensus       247 ~------~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~  281 (283)
T 3gen_A          247 S------EKVYTIMYSCWHEKADERPTFKILLSNILDVMDE  281 (283)
T ss_dssp             C------HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             C------HHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence            1      2566788899999999999999999999985543

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=6.8e-36  Score=331.67  Aligned_cols=241  Identities=22%  Similarity=0.284  Sum_probs=170.3

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCHH
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS  769 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L~  769 (966)
                      .+|+|++|.||+++...++..||||++...   ....+.+|+..+.++-.|||||++++++.+++..|+||||+++|+|.
T Consensus        18 ~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~   94 (325)
T 3kn6_A           18 PLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELF   94 (325)
T ss_dssp             CSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHH
T ss_pred             ccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcHH
Confidence            478999999999999889999999998543   23456678877777434999999999999999999999999999999


Q ss_pred             HHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC-CceEEEeccccceecC------CCCcC
Q 002105          770 EVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAYCTD------SKSIN  839 (966)
Q Consensus       770 ~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~-~~~~~~~~~~~~~~~~------~~~~~  839 (966)
                      ++++.   +++.++..++.|++.||+|||   +.+|+||||||+||+++.+. ...++++|||++....      ....|
T Consensus        95 ~~l~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  171 (325)
T 3kn6_A           95 ERIKKKKHFSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCF  171 (325)
T ss_dssp             HHHHHCSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC----------
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcccccCC
Confidence            99963   899999999999999999999   45899999999999997643 3468999999986432      23467


Q ss_pred             CcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc--hhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          840 SSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV--HESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       840 ~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      |+.|+|||++.+..++.++|||||||++|||+||+.||......  .....+....... ....  .++...      ..
T Consensus       172 t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~-~~~~--~~~~~~------~~  242 (325)
T 3kn6_A          172 TLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKK-GDFS--FEGEAW------KN  242 (325)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTT-TCCC--CCSHHH------HT
T ss_pred             CcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHc-CCCC--CCcccc------cC
Confidence            89999999999999999999999999999999999999753221  0111111111111 1110  000000      01


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ...++.+++.+|++.||++|||++|+++
T Consensus       243 ~s~~~~~li~~~L~~dP~~Rpt~~ell~  270 (325)
T 3kn6_A          243 VSQEAKDLIQGLLTVDPNKRLKMSGLRY  270 (325)
T ss_dssp             SCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred             CCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence            1235667888999999999999999874

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=1.2e-35  Score=344.79  Aligned_cols=238  Identities=22%  Similarity=0.332  Sum_probs=189.3

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCC-eeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK-AAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~-~~~lv~Ey~~  764 (966)
                      .....+|+|+||.||++..  .|..||||++....  ..+.|.+|+..+.+ ++|||||+++|+|.+++ ..|+|||||+
T Consensus       196 ~~~~~lG~G~fg~V~~~~~--~~~~vavK~~~~~~--~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~~iv~e~~~  270 (450)
T 1k9a_A          196 KLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA--TAQAFLAEASVMTQ-LRHSNLVQLLGVIVEEKGGLYIVTEYMA  270 (450)
T ss_dssp             EEEEEEEECSSEEEEEEEE--TTEEEEEEEESSCT--TSHHHHHHHHHHHT-CCCTTBCCEEEEEECTTSCEEEEEECCT
T ss_pred             EEEeeecCcCCeeEEEEEe--cCCeEEEEEeCCch--HHHHHHHHHHHHHh-ccCCCEEEEEEEEEcCCCceEEEEEecC
Confidence            3455679999999999986  47899999986433  45678889888887 69999999999987765 7999999999


Q ss_pred             CCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---CC
Q 002105          765 GKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---SK  836 (966)
Q Consensus       765 ~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---~~  836 (966)
                      +|+|.++++.     +++..+..++.|||+||+|||   +.+|+||||||+|||++.+.  .++++|||++....   ..
T Consensus       271 ~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~--~~kl~DfG~a~~~~~~~~~  345 (450)
T 1k9a_A          271 KGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDN--VAKVSDFGLTKEASSTQDT  345 (450)
T ss_dssp             TCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTS--CEEECCCTTCEECC-----
T ss_pred             CCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEECCCC--CEEEeeCCCcccccccccC
Confidence            9999999963     689999999999999999999   45899999999999998654  57899999986532   22


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ..+++.|+|||.+.+..++.++|||||||++|||+| |+.||..... .+ +...+.   .+..      +.....++  
T Consensus       346 ~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~-~~-~~~~i~---~~~~------~~~p~~~~--  412 (450)
T 1k9a_A          346 GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL-KD-VVPRVE---KGYK------MDAPDGCP--  412 (450)
T ss_dssp             -CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCT-TT-HHHHHH---TTCC------CCCCTTCC--
T ss_pred             CCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH-HH-HHHHHH---cCCC------CCCCCcCC--
Confidence            356789999999999999999999999999999999 9999875321 11 212221   1111      11111222  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTKTLESC  950 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~  950 (966)
                          .++.+++.+||+.||++|||+.|+++.|+++
T Consensus       413 ----~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i  443 (450)
T 1k9a_A          413 ----PAVYDVMKNCWHLDAATRPTFLQLREQLEHI  443 (450)
T ss_dssp             ----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence                3566788899999999999999999999983

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=8.9e-36  Score=332.64  Aligned_cols=241  Identities=24%  Similarity=0.296  Sum_probs=188.0

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .....+|+|+||.||+++...+|..||||.+....    ..+.+|++.+.++.+|||||++++++.+++..|+|||||++
T Consensus        25 ~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~----~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~g  100 (342)
T 2qr7_A           25 EVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK----RDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKG  100 (342)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTT----CCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             EEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEccc----CChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCCCC
Confidence            44456789999999999998899999999986432    34567888888866899999999999999999999999999


Q ss_pred             CCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC--CceEEEeccccceecC------
Q 002105          766 KELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD--EPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       766 g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~--~~~~~~~~~~~~~~~~------  834 (966)
                      |+|.+++.   .+++.+...++.||+.||+|||.   .+|+||||||+||++.++.  ...++++|||++....      
T Consensus       101 g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~---~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~  177 (342)
T 2qr7_A          101 GELLDKILRQKFFSEREASAVLFTITKTVEYLHA---QGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLL  177 (342)
T ss_dssp             CBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCCB
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH---CCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCce
Confidence            99999986   38999999999999999999994   5899999999999985432  2458999999986422      


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc-hhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV-HESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      ....||+.|+|||++.+..|+.++|||||||++|||++|+.||...... ...+...+..    ....  ..+......+
T Consensus       178 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~----~~~~--~~~~~~~~~s  251 (342)
T 2qr7_A          178 MTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGS----GKFS--LSGGYWNSVS  251 (342)
T ss_dssp             CCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHH----CCCC--CCSTTTTTSC
T ss_pred             eccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHcc----CCcc--cCccccccCC
Confidence            2346899999999998888999999999999999999999999753222 2222121111    1110  0000111122


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         +   ++.+++.+|++.||++|||+.||++
T Consensus       252 ---~---~~~~li~~~L~~dP~~R~t~~~il~  277 (342)
T 2qr7_A          252 ---D---TAKDLVSKMLHVDPHQRLTAALVLR  277 (342)
T ss_dssp             ---H---HHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             ---H---HHHHHHHHHCCCChhHCcCHHHHhc
Confidence               2   4566788999999999999999874

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=2.5e-35  Score=325.57  Aligned_cols=235  Identities=20%  Similarity=0.337  Sum_probs=185.8

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|++|.||+|+...+|+.||+|++.....   ...+.+.+|...+.+ ++|||||++++++.+++..|+||||
T Consensus         9 ~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~-l~hp~Iv~~~~~~~~~~~~~lv~e~   87 (318)
T 1fot_A            9 QILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSI-VTHPFIIRMWGTFQDAQQIFMIMDY   87 (318)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHS-CCBTTBCCEEEEEECSSEEEEEECC
T ss_pred             EEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhh-CCCCCCceEeEEEEeCCEEEEEEeC
Confidence            445567899999999999988999999999865321   122335556666655 7999999999999999999999999


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---CC
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---SK  836 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---~~  836 (966)
                      +++|+|.++++   .+++.....++.||+.||+|||   +.+|+||||||+||+++.++  .++++|||++....   ..
T Consensus        88 ~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g--~~kL~Dfg~a~~~~~~~~~  162 (318)
T 1fot_A           88 IEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNG--HIKITDFGFAKYVPDVTYT  162 (318)
T ss_dssp             CCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTS--CEEECCCSSCEECSSCBCC
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChheEEEcCCC--CEEEeecCcceecCCcccc
Confidence            99999999996   3889999999999999999999   56999999999999998654  58999999986532   34


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchH
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ  916 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  916 (966)
                      .+||+.|+|||++.+..++.++|||||||++|||++|+.||.... ..+.. +   ..... .      .......+   
T Consensus       163 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-~~~~~-~---~i~~~-~------~~~p~~~~---  227 (318)
T 1fot_A          163 LCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSN-TMKTY-E---KILNA-E------LRFPPFFN---  227 (318)
T ss_dssp             CCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS-HHHHH-H---HHHHC-C------CCCCTTSC---
T ss_pred             ccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC-HHHHH-H---HHHhC-C------CCCCCCCC---
Confidence            578999999999999999999999999999999999999997532 11111 1   11111 0      01111122   


Q ss_pred             HHHHHHHHHHHHccCCCCCCCC-----CHHHHH
Q 002105          917 NEIVEIMNLALHCTAGDPTARP-----CASDVT  944 (966)
Q Consensus       917 ~~~~~~~~l~~~C~~~~P~~RP-----t~~~v~  944 (966)
                      +   ++.+++.+|++.||++||     +++||.
T Consensus       228 ~---~~~~li~~lL~~dp~~R~~~~~~~~~~i~  257 (318)
T 1fot_A          228 E---DVKDLLSRLITRDLSQRLGNLQNGTEDVK  257 (318)
T ss_dssp             H---HHHHHHHHHTCSCTTTCTTSSTTTTHHHH
T ss_pred             H---HHHHHHHHHhccCHHHcCCCcCCCHHHHh
Confidence            2   456777899999999999     788876

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=3.4e-37  Score=342.87  Aligned_cols=253  Identities=19%  Similarity=0.259  Sum_probs=192.3

Q ss_pred             cccccccCCCCCccEEEEEE----EecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEe--cCCeeE
Q 002105          684 TEENLTSRGKKGVSSSYKVR----SLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR--SEKAAY  757 (966)
Q Consensus       684 ~~~~~~~~g~~g~~~vy~~~----~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~--~~~~~~  757 (966)
                      .+.....+|+|++|.||+++    ...++..||||++........+.+.+|+..+.+ ++|||||++++++.  ..+..+
T Consensus        24 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~~~  102 (327)
T 3lxl_A           24 HLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKA-LHSDFIVKYRGVSYGPGRQSLR  102 (327)
T ss_dssp             GEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHT-CCCTTBCCEEEEEECSSSCEEE
T ss_pred             hhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHh-cCCCceeEEEEEEecCCCceEE
Confidence            34556678999999999998    456888999999876554445568888888887 69999999999987  456789


Q ss_pred             EEEEccCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec
Q 002105          758 LVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT  833 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~  833 (966)
                      +||||+++|+|.++++.    +++..+..++.|++.||+|||   +.+|+||||||+||+++.+  ..++++|||.+...
T Consensus       103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~--~~~kl~Dfg~~~~~  177 (327)
T 3lxl_A          103 LVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLG---SRRCVHRDLAARNILVESE--AHVKIADFGLAKLL  177 (327)
T ss_dssp             EEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEET--TEEEECCGGGCEEC
T ss_pred             EEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChhhEEECCC--CCEEEcccccceec
Confidence            99999999999999963    899999999999999999999   4599999999999999865  45789999988642


Q ss_pred             C---------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCch----------hhHHHHHHHh
Q 002105          834 D---------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVH----------ESIVEWARYC  894 (966)
Q Consensus       834 ~---------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~----------~~~~~~~~~~  894 (966)
                      .         ....+|+.|+|||++.+..++.++|||||||++|||+||+.|+.......          ....+.... 
T Consensus       178 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-  256 (327)
T 3lxl_A          178 PLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLEL-  256 (327)
T ss_dssp             CTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHH-
T ss_pred             ccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHH-
Confidence            2         22357788999999998889999999999999999999999975321100          000000000 


Q ss_pred             hccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 002105          895 YSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS  954 (966)
Q Consensus       895 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~  954 (966)
                      .....     .+.....+      ..++.+++.+|++.||++|||++||++.|++++...
T Consensus       257 ~~~~~-----~~~~~~~~------~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~  305 (327)
T 3lxl_A          257 LEEGQ-----RLPAPPAC------PAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGS  305 (327)
T ss_dssp             HHTTC-----CCCCCTTC------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC----
T ss_pred             hhccc-----CCCCCCcc------cHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence            00000     00011111      135667888999999999999999999999865544

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=1.1e-35  Score=330.41  Aligned_cols=244  Identities=18%  Similarity=0.267  Sum_probs=187.9

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcE----EEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQ----FVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~----vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      +.....+|+|++|.||+|+...++..    ||+|.+.... ....+.+.+|+..+.+ ++|||||+++++|. ++..++|
T Consensus        15 y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~-~~~~~~v   92 (325)
T 3kex_A           15 LRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGS-LDHAHIVRLLGLCP-GSSLQLV   92 (325)
T ss_dssp             EEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHT-CCCTTBCCEEEEEC-BSSEEEE
T ss_pred             ceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhc-CCCCCcCeEEEEEc-CCccEEE
Confidence            34455679999999999998777766    6677664332 2334567788888877 69999999999986 4568999


Q ss_pred             EEccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-
Q 002105          760 YEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-  834 (966)
                      |||+++|+|.++++    .+++..+..++.|++.||+|||.   .+|+||||||+||+++.+.  .++++|||++.... 
T Consensus        93 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~--~~kl~Dfg~a~~~~~  167 (325)
T 3kex_A           93 TQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEE---HGMVHRNLAARNVLLKSPS--QVQVADFGVADLLPP  167 (325)
T ss_dssp             EECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHH---TTCCCSCCSSTTEEESSSS--CEEECSCSGGGGSCC
T ss_pred             EEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHh---CCCCCCccchheEEECCCC--eEEECCCCcccccCc
Confidence            99999999999995    48899999999999999999994   5899999999999998654  57899999986421 


Q ss_pred             -------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccc
Q 002105          835 -------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDP  906 (966)
Q Consensus       835 -------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  906 (966)
                             ....+++.|+|||++.+..++.++|||||||++|||+| |+.||.....  ..+.+....   ....   ..|
T Consensus       168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~~---~~~~---~~~  239 (325)
T 3kex_A          168 DDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRL--AEVPDLLEK---GERL---AQP  239 (325)
T ss_dssp             CTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCT--THHHHHHHT---TCBC---CCC
T ss_pred             ccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCH--HHHHHHHHc---CCCC---CCC
Confidence                   22346778999999998899999999999999999999 9999975422  122122221   1000   011


Q ss_pred             cccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          907 FIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       907 ~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                         ...+      .++.+++.+||+.||++|||++||++.|++..+
T Consensus       240 ---~~~~------~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~  276 (325)
T 3kex_A          240 ---QICT------IDVYMVMVKCWMIDENIRPTFKELANEFTRMAR  276 (325)
T ss_dssp             ---TTBC------TTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTT
T ss_pred             ---CcCc------HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence               1111      135567889999999999999999999998554

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=334.42  Aligned_cols=251  Identities=18%  Similarity=0.220  Sum_probs=192.6

Q ss_pred             cccccCCCCCccEEEEEEEec--------CCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeE------------
Q 002105          686 ENLTSRGKKGVSSSYKVRSLA--------NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVR------------  745 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~--------~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~------------  745 (966)
                      .....+|+|++|.||+|+...        ++..||||.+...     +.+.+|+..+.+ ++|||||+            
T Consensus        45 ~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~  118 (352)
T 2jii_A           45 KLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQR-AAKPLQVNKWKKLYSTPLLA  118 (352)
T ss_dssp             EEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHH-HCCHHHHHHHHHHTTCTTCS
T ss_pred             EEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHH-hcccchhhhhhhhccCCccC
Confidence            444567899999999999866        4889999988643     467888888887 69999988            


Q ss_pred             ---EeeEEec-CCeeEEEEEccCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcC
Q 002105          746 ---LHGVCRS-EKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDG  816 (966)
Q Consensus       746 ---l~g~~~~-~~~~~lv~Ey~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~  816 (966)
                         +++++.. ++..|+||||+ +|+|.++++.     +++..+..++.||+.||+|||.   .+|+||||||+||+++.
T Consensus       119 i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dikp~NIl~~~  194 (352)
T 2jii_A          119 IPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHE---NEYVHGNVTAENIFVDP  194 (352)
T ss_dssp             CCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCGGGEEEET
T ss_pred             ccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCHHHEEEcC
Confidence               6777776 78899999999 9999999963     8999999999999999999994   59999999999999997


Q ss_pred             CCCceEEEeccccceecC-------------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc
Q 002105          817 KDEPHLRLSVPGLAYCTD-------------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV  883 (966)
Q Consensus       817 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~  883 (966)
                      +....++++|||++....             ....||+.|+|||++.+..++.++|||||||++|||+||+.||......
T Consensus       195 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~  274 (352)
T 2jii_A          195 EDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPN  274 (352)
T ss_dssp             TEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC
T ss_pred             CCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcC
Confidence            654578999999985321             2236899999999999999999999999999999999999999764323


Q ss_pred             hhhHHHHHHHhhccCccccccccccc-CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 002105          884 HESIVEWARYCYSDCHLDTWVDPFIR-GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS  954 (966)
Q Consensus       884 ~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~  954 (966)
                      ...+..........  ...+.++... ..++      .++.+++.+|++.||++|||++||+++|++++...
T Consensus       275 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~  338 (352)
T 2jii_A          275 TEDIMKQKQKFVDK--PGPFVGPCGHWIRPS------ETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDL  338 (352)
T ss_dssp             HHHHHHHHHHHHHS--CCCEECTTSCEECCC------HHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccCC--hhhhhhhccccCCCc------HHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhc
Confidence            33232222211111  1111111100 0111      35667788999999999999999999999976553

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=1.2e-35  Score=338.55  Aligned_cols=242  Identities=20%  Similarity=0.312  Sum_probs=187.1

Q ss_pred             cccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          684 TEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       684 ~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      ++.....+|+|+||.||+|+...++..||+|++....   ....+.+.+|...+.+ ++|||||+++++|.+++..|+||
T Consensus        70 ~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~-l~hp~Iv~l~~~~~~~~~~~lV~  148 (410)
T 3v8s_A           70 DYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAF-ANSPWVVQLFYAFQDDRYLYMVM  148 (410)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHH-CCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHh-CCCCCCCeEEEEEEECCEEEEEE
Confidence            3455667899999999999998899999999986532   2233446666666655 79999999999999999999999


Q ss_pred             EccCCCCHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          761 EYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       761 Ey~~~g~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      |||+||+|.++++.  +++.....++.||+.||+|||   +.+||||||||+|||++.++  +++++|||++....    
T Consensus       149 E~~~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g--~ikL~DFG~a~~~~~~~~  223 (410)
T 3v8s_A          149 EYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSG--HLKLADFGTCMKMNKEGM  223 (410)
T ss_dssp             CCCTTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTS--CEEECCCTTCEECCTTSE
T ss_pred             eCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeeECCCC--CEEEeccceeEeeccCCc
Confidence            99999999999974  889999999999999999999   45899999999999998654  58999999986422    


Q ss_pred             ---CCCcCCcccccccccCCCC----CCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccc
Q 002105          835 ---SKSINSSAYVAPETKESKD----ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF  907 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~~~----~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  907 (966)
                         ...+||+.|||||++.+..    |+.++|||||||++|||+||+.||.+... .+.......... ...     -|.
T Consensus       224 ~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~-~~~~~~i~~~~~-~~~-----~p~  296 (410)
T 3v8s_A          224 VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL-VGTYSKIMNHKN-SLT-----FPD  296 (410)
T ss_dssp             EECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSH-HHHHHHHHTHHH-HCC-----CCT
T ss_pred             ccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCCh-hhHHHHHHhccc-ccc-----CCC
Confidence               2457999999999987655    88999999999999999999999975421 111111111000 000     010


Q ss_pred             ccCCCcchHHHHHHHHHHHHHccCCCCCC--CCCHHHHHH
Q 002105          908 IRGHVSSIQNEIVEIMNLALHCTAGDPTA--RPCASDVTK  945 (966)
Q Consensus       908 ~~~~~~~~~~~~~~~~~l~~~C~~~~P~~--RPt~~~v~~  945 (966)
                       ....+   +   ++.+++.+|++.+|.+  ||+++||.+
T Consensus       297 -~~~~s---~---~~~~li~~lL~~~~~rlgR~~~~ei~~  329 (410)
T 3v8s_A          297 -DNDIS---K---EAKNLICAFLTDREVRLGRNGVEEIKR  329 (410)
T ss_dssp             -TCCCC---H---HHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred             -ccccc---H---HHHHHHHHHccChhhhCCCCCHHHHhc
Confidence             00111   2   4566778999999988  999999875

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=3.3e-35  Score=331.85  Aligned_cols=238  Identities=19%  Similarity=0.261  Sum_probs=187.1

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      +.....+|+|++|.||+|+...++..||+|++....   ....+.+.+|+..+.+ ++|||||+++++|.+++..|+|||
T Consensus        17 y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~-l~hp~Iv~l~~~~~~~~~~~lv~e   95 (384)
T 4fr4_A           17 FEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQG-LEHPFLVNLWYSFQDEEDMFMVVD   95 (384)
T ss_dssp             EEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHT-CCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             eEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHh-CCCCCCCcEEEEEEeCCEEEEEEe
Confidence            345566799999999999998899999999986432   2223456778877777 699999999999999999999999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-----
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-----  833 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-----  833 (966)
                      |++||+|.++++   .+++.....++.||+.||+|||   +.+|+||||||+|||++.++  .++++|||++...     
T Consensus        96 ~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g--~vkL~DFG~a~~~~~~~~  170 (384)
T 4fr4_A           96 LLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHG--HVHITDFNIAAMLPRETQ  170 (384)
T ss_dssp             CCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTS--CEEECCCTTCEECCTTCC
T ss_pred             cCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEECCCC--CEEEeccceeeeccCCCc
Confidence            999999999997   4899999999999999999999   45899999999999998654  5789999998653     


Q ss_pred             CCCCcCCcccccccccCC---CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc-hhhHHHHHHHhhccCccccccccccc
Q 002105          834 DSKSINSSAYVAPETKES---KDITEKGDIYGFGLILIDLLTGKSPADADFGV-HESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       834 ~~~~~~~~~y~aPE~~~~---~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                      .....||+.|+|||++..   ..|+.++|||||||++|||+||+.||...... ..........   . .      +...
T Consensus       171 ~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~---~-~------~~~p  240 (384)
T 4fr4_A          171 ITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFET---T-V------VTYP  240 (384)
T ss_dssp             BCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHH---C-C------CCCC
T ss_pred             eeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhh---c-c------cCCC
Confidence            234578999999999863   45899999999999999999999999754322 1111111111   0 0      0011


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCC-HHHHH
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPC-ASDVT  944 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt-~~~v~  944 (966)
                      ..++      .++.+++.+|++.||++||+ +++|.
T Consensus       241 ~~~s------~~~~~li~~lL~~dP~~R~s~~~~l~  270 (384)
T 4fr4_A          241 SAWS------QEMVSLLKKLLEPNPDQRFSQLSDVQ  270 (384)
T ss_dssp             TTSC------HHHHHHHHHHSCSSGGGSCCSHHHHH
T ss_pred             CcCC------HHHHHHHHHHhcCCHhHhcccHHHHH
Confidence            1122      25667888999999999999 66664

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=1.2e-35  Score=334.87  Aligned_cols=239  Identities=24%  Similarity=0.299  Sum_probs=181.8

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      +..+..+|+|++|.||+|+...++..||+|++.....   .....+..|...+.+.++|||||++++++.+++..|+|||
T Consensus        40 y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv~E  119 (373)
T 2r5t_A           40 FHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLD  119 (373)
T ss_dssp             EEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             eEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEEEe
Confidence            4556678999999999999988899999999865432   2233455666555555799999999999999999999999


Q ss_pred             ccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-----
Q 002105          762 YIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-----  833 (966)
Q Consensus       762 y~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-----  833 (966)
                      |++||+|.++++.   +++.....++.||+.||+|||   +.+|+||||||+|||++.++  +++++|||++...     
T Consensus       120 ~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g--~ikL~DFG~a~~~~~~~~  194 (373)
T 2r5t_A          120 YINGGELFYHLQRERCFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQG--HIVLTDFGLCKENIEHNS  194 (373)
T ss_dssp             CCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTS--CEEECCCCBCGGGBCCCC
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCC--CEEEeeCccccccccCCC
Confidence            9999999999863   889999999999999999999   45899999999999999654  6899999987641     


Q ss_pred             -CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          834 -DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       834 -~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                       ....+||+.|+|||++.+..++.++|||||||++|||++|+.||....  ...+.+.+   ... ..      .+....
T Consensus       195 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~--~~~~~~~i---~~~-~~------~~~~~~  262 (373)
T 2r5t_A          195 TTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRN--TAEMYDNI---LNK-PL------QLKPNI  262 (373)
T ss_dssp             CCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSB--HHHHHHHH---HHS-CC------CCCSSS
T ss_pred             ccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC--HHHHHHHH---Hhc-cc------CCCCCC
Confidence             234578999999999999999999999999999999999999997532  11111111   111 00      011112


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      +   .   ++.+++.+|++.||++||++.+.++.
T Consensus       263 ~---~---~~~~li~~lL~~dp~~R~~~~~~~~~  290 (373)
T 2r5t_A          263 T---N---SARHLLEGLLQKDRTKRLGAKDDFME  290 (373)
T ss_dssp             C---H---HHHHHHHHHTCSSGGGSTTTTTTHHH
T ss_pred             C---H---HHHHHHHHHcccCHHhCCCCCCCHHH
Confidence            2   2   45667789999999999998654433

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=1.2e-35  Score=331.46  Aligned_cols=258  Identities=19%  Similarity=0.323  Sum_probs=192.2

Q ss_pred             cccccCCCCCccEEEEEEEe-------cCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeE
Q 002105          686 ENLTSRGKKGVSSSYKVRSL-------ANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAY  757 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~-------~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~  757 (966)
                      .....+|+|++|.||+|+..       .++..||||++..... ...+.+.+|+..+.++.+|||||+++++|..++..+
T Consensus        38 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~  117 (334)
T 2pvf_A           38 TLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLY  117 (334)
T ss_dssp             EEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCCE
T ss_pred             EEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccCCceE
Confidence            34456789999999999874       3567899998764322 223457788888877448999999999999999999


Q ss_pred             EEEEccCCCCHHHHHHc-------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC
Q 002105          758 LVYEYIEGKELSEVLRN-------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD  818 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~~-------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~  818 (966)
                      +||||+++|+|.++++.                   ++|..+..++.||++||+|||   +.+|+||||||+||+++.+.
T Consensus       118 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~  194 (334)
T 2pvf_A          118 VIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENN  194 (334)
T ss_dssp             EEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTC
T ss_pred             EEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCccceEEEcCCC
Confidence            99999999999999963                   789999999999999999999   45899999999999998654


Q ss_pred             CceEEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHH
Q 002105          819 EPHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVE  889 (966)
Q Consensus       819 ~~~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~  889 (966)
                        .++++|||.+....        ....+|+.|+|||++.+..++.++|||||||++|||+| |+.||.+..  ...+.+
T Consensus       195 --~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~--~~~~~~  270 (334)
T 2pvf_A          195 --VMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP--VEELFK  270 (334)
T ss_dssp             --CEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC--HHHHHH
T ss_pred             --CEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCC--HHHHHH
Confidence              57899999886432        22356788999999988889999999999999999999 999986531  222212


Q ss_pred             HHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCCcCCCCccCCC
Q 002105          890 WARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISSCVSGLKFSSP  965 (966)
Q Consensus       890 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~~~~~~~~~~~~  965 (966)
                      ....   ...      +.....++      .++.+++.+||+.||++|||++||++.|++++........+..|.|
T Consensus       271 ~~~~---~~~------~~~~~~~~------~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~~~~~~~~~~~~  331 (334)
T 2pvf_A          271 LLKE---GHR------MDKPANCT------NELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTTNEEYLDLSQP  331 (334)
T ss_dssp             HHHH---TCC------CCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC----------
T ss_pred             HHhc---CCC------CCCCccCC------HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccccCcccCCCCc
Confidence            2211   110      01111122      2566788899999999999999999999997665555555555544

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=2.2e-35  Score=329.81  Aligned_cols=238  Identities=21%  Similarity=0.304  Sum_probs=183.7

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc---cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI---TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~---~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|++|.||+|+...+++.||+|++......   ..+.+.+|...+.++.+|||||++++++.+++..|+||||
T Consensus        12 ~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~e~   91 (345)
T 3a8x_A           12 DLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEY   91 (345)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECC
T ss_pred             EEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEEEeC
Confidence            4455679999999999999888999999998754322   1233566777777755899999999999999999999999


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------  833 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------  833 (966)
                      +++|+|.++++   .+++..+..++.||+.||+|||   +.+|+||||||+||+++.++  +++++|||++...      
T Consensus        92 ~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g--~~kL~DFG~a~~~~~~~~~  166 (345)
T 3a8x_A           92 VNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEG--HIKLTDYGMCKEGLRPGDT  166 (345)
T ss_dssp             CCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTS--CEEECCGGGCBCSCCTTCC
T ss_pred             CCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCC--CEEEEeccccccccCCCCc
Confidence            99999999986   4899999999999999999999   45899999999999998654  5899999988642      


Q ss_pred             CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchh---hHHHHHHHhhccCcccccccccccC
Q 002105          834 DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHE---SIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       834 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                      ....+||+.|+|||++.+..++.++|||||||++|||+||+.||........   ...+..........      +.+..
T Consensus       167 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~------~~~p~  240 (345)
T 3a8x_A          167 TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQ------IRIPR  240 (345)
T ss_dssp             BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCC------CCCCT
T ss_pred             ccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCC------CCCCC
Confidence            2345789999999999999999999999999999999999999964211100   00011111111111      01111


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCA  940 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~  940 (966)
                      ..+      .++.+++.+|++.||++||++
T Consensus       241 ~~s------~~~~~li~~lL~~dP~~R~~~  264 (345)
T 3a8x_A          241 SLS------VKAASVLKSFLNKDPKERLGC  264 (345)
T ss_dssp             TSC------HHHHHHHHHHTCSSTTTSTTC
T ss_pred             CCC------HHHHHHHHHHhcCCHhHCCCC
Confidence            122      245677889999999999996

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.8e-36  Score=332.70  Aligned_cols=235  Identities=19%  Similarity=0.277  Sum_probs=184.8

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|++|.||+|++..++..||||++....   ......+.+|+..+.+ ++|||||++++++..++..++||||
T Consensus        12 ~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~-l~hpnIv~l~~~~~~~~~~~lv~E~   90 (336)
T 3h4j_B           12 IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKL-LRHPHIIKLYDVITTPTDIVMVIEY   90 (336)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTT-CCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             EEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHh-CCCCCCCeEEEEEEeCCEEEEEEEC
Confidence            34456789999999999998999999999986431   1223456778777766 7999999999999999999999999


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      + +|+|.+++.   .+++.++..++.|++.||+|||.   .+|+||||||+||+++++.  .++++|||++....     
T Consensus        91 ~-~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~--~~kl~DFG~s~~~~~~~~~  164 (336)
T 3h4j_B           91 A-GGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHR---HKIVHRDLKPENLLLDDNL--NVKIADFGLSNIMTDGNFL  164 (336)
T ss_dssp             C-CEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH---HTCCCCCCSTTTEEECTTC--CEEECCSSCTBTTTTSBTT
T ss_pred             C-CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCchhhEEEcCCC--CEEEEEeccceeccCCccc
Confidence            9 689999885   48999999999999999999995   4899999999999999654  57899999886422     


Q ss_pred             CCCcCCcccccccccCCCCC-CCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          835 SKSINSSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~-~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      ...+||+.|+|||.+.+..+ +.++|||||||++|||+||+.||+..... ..        ......   ....+....+
T Consensus       165 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~-~~--------~~~i~~---~~~~~p~~~s  232 (336)
T 3h4j_B          165 KTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIP-NL--------FKKVNS---CVYVMPDFLS  232 (336)
T ss_dssp             CCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSST-TC--------BCCCCS---SCCCCCTTSC
T ss_pred             ccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHH-HH--------HHHHHc---CCCCCcccCC
Confidence            34578999999999988876 68999999999999999999999754211 00        000000   0011111122


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                            .++.+++.+|++.||.+|||++|+++
T Consensus       233 ------~~~~~li~~~L~~dP~~Rpt~~eil~  258 (336)
T 3h4j_B          233 ------PGAQSLIRRMIVADPMQRITIQEIRR  258 (336)
T ss_dssp             ------HHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred             ------HHHHHHHHHHcCCChhHCcCHHHHHh
Confidence                  24567888999999999999999975

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=8.8e-36  Score=334.09  Aligned_cols=242  Identities=19%  Similarity=0.187  Sum_probs=184.9

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEecc-----CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV-----NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~-----~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      .....+|+|++|.||+|+...++..||+|++...     .....+.+.+|+..+.+ ++|||||++++++.+++..++||
T Consensus        29 ~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~hpniv~~~~~~~~~~~~~lv~  107 (345)
T 3hko_A           29 HLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKK-LHHPNIARLYEVYEDEQYICLVM  107 (345)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHH-CCCTTBCCEEEEEECSSEEEEEE
T ss_pred             eecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHh-CCCCCcceeehhhccCCeEEEEE
Confidence            3445578889999999999889999999998643     22233567788888877 69999999999999999999999


Q ss_pred             EccCCCCHHHHHHc-------------------------------------------CCHHHHHHHHHHHHHHHHHHhhc
Q 002105          761 EYIEGKELSEVLRN-------------------------------------------LSWERRRKVAIGIAKALRFLHFH  797 (966)
Q Consensus       761 Ey~~~g~L~~~l~~-------------------------------------------l~~~~~~~i~~~ia~~l~yLH~~  797 (966)
                      |||++|+|.++++.                                           +++.....++.|+++||+|||. 
T Consensus       108 e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~-  186 (345)
T 3hko_A          108 ELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHN-  186 (345)
T ss_dssp             ECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             eCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH-
Confidence            99999999998841                                           2456677899999999999994 


Q ss_pred             CCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----------CCCCcCCcccccccccCC--CCCCCcchHHHHHH
Q 002105          798 CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----------DSKSINSSAYVAPETKES--KDITEKGDIYGFGL  865 (966)
Q Consensus       798 ~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~y~aPE~~~~--~~~~~~~Dv~S~Gv  865 (966)
                        .+|+||||||+||+++.+....++++|||.+...          .....||+.|+|||.+.+  ..++.++|||||||
T Consensus       187 --~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~  264 (345)
T 3hko_A          187 --QGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGV  264 (345)
T ss_dssp             --TTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHH
T ss_pred             --CCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHH
Confidence              5899999999999998776667899999988642          123468999999999865  67899999999999


Q ss_pred             HHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          866 ILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       866 ~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ++|||+||+.||..... .+.....    .....  ....|... ..+      .++.+++.+|++.||++|||+.|+++
T Consensus       265 il~el~~g~~pf~~~~~-~~~~~~~----~~~~~--~~~~~~~~-~~~------~~~~~li~~~l~~~p~~Rps~~~~l~  330 (345)
T 3hko_A          265 LLHLLLMGAVPFPGVND-ADTISQV----LNKKL--CFENPNYN-VLS------PLARDLLSNLLNRNVDERFDAMRALQ  330 (345)
T ss_dssp             HHHHHHHSSCSSCCSSH-HHHHHHH----HHCCC--CTTSGGGG-GSC------HHHHHHHHHHSCSCTTTSCCHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCh-HHHHHHH----Hhccc--ccCCcccc-cCC------HHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            99999999999975421 1111111    11110  00111110 111      24667888999999999999999976

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=2e-35  Score=324.03  Aligned_cols=239  Identities=18%  Similarity=0.314  Sum_probs=181.7

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc--------------------------cccchHHHHHHHHhhc
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--------------------------TTSSFWPDVSQFGKLI  738 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--------------------------~~~~~~~e~~~~~~~~  738 (966)
                      +.....+|+|++|.||+|+...++..||||++......                          ..+.+.+|+..+.+ +
T Consensus        15 y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l   93 (298)
T 2zv2_A           15 YTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKK-L   93 (298)
T ss_dssp             EEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHT-C
T ss_pred             eEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHh-C
Confidence            34455679999999999999889999999998654211                          12457788888877 6


Q ss_pred             CCCceeEEeeEEec--CCeeEEEEEccCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEE
Q 002105          739 MHPNIVRLHGVCRS--EKAAYLVYEYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV  814 (966)
Q Consensus       739 ~H~niv~l~g~~~~--~~~~~lv~Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill  814 (966)
                      +|||||++++++.+  ++..|+||||+++|+|.+++.  .+++.+...++.||++||+|||.   .+|+||||||+||++
T Consensus        94 ~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~  170 (298)
T 2zv2_A           94 DHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHY---QKIIHRDIKPSNLLV  170 (298)
T ss_dssp             CCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEE
T ss_pred             CCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEE
Confidence            99999999999986  568999999999999988764  48999999999999999999994   589999999999999


Q ss_pred             cCCCCceEEEeccccceecC------CCCcCCcccccccccCCCC---CCCcchHHHHHHHHHHHHcCCCCCCCCCCchh
Q 002105          815 DGKDEPHLRLSVPGLAYCTD------SKSINSSAYVAPETKESKD---ITEKGDIYGFGLILIDLLTGKSPADADFGVHE  885 (966)
Q Consensus       815 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~---~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~  885 (966)
                      +.+.  .++++|||++....      ....||+.|+|||++.+..   ++.++|||||||++|||++|+.||....  ..
T Consensus       171 ~~~~--~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~--~~  246 (298)
T 2zv2_A          171 GEDG--HIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER--IM  246 (298)
T ss_dssp             CTTS--CEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSS--HH
T ss_pred             CCCC--CEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCcc--HH
Confidence            8654  57899999886532      2346899999999987665   3778999999999999999999987531  11


Q ss_pred             hHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          886 SIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       886 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         .+....... ...   .|. ....+      .++.+++.+|++.||++|||+.|+++
T Consensus       247 ---~~~~~~~~~-~~~---~~~-~~~~~------~~l~~li~~~l~~dp~~R~s~~e~l~  292 (298)
T 2zv2_A          247 ---CLHSKIKSQ-ALE---FPD-QPDIA------EDLKDLITRMLDKNPESRIVVPEIKL  292 (298)
T ss_dssp             ---HHHHHHHHC-CCC---CCS-SSCCC------HHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             ---HHHHHHhcc-cCC---CCC-ccccC------HHHHHHHHHHhhcChhhCCCHHHHhc
Confidence               111111111 100   010 01111      24667788999999999999999864

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=9.3e-36  Score=329.71  Aligned_cols=248  Identities=20%  Similarity=0.273  Sum_probs=189.6

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEe----cCCeeEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR----SEKAAYLVY  760 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~----~~~~~~lv~  760 (966)
                      +.....+|+|++|.||+++...++..||||++........+.+.+|+..+.+ ++|||||++++++.    ..+..++||
T Consensus        31 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~~~~lv~  109 (317)
T 2buj_A           31 YLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRL-FNHPNILRLVAYCLRERGAKHEAWLLL  109 (317)
T ss_dssp             EEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHT-CCCTTBCCCCEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhh-cCCCCeeeEEEEEEeccCCCceeEEEE
Confidence            4555667999999999999988999999999876554455667888887777 69999999999997    345789999


Q ss_pred             EccCCCCHHHHHHc-------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec
Q 002105          761 EYIEGKELSEVLRN-------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT  833 (966)
Q Consensus       761 Ey~~~g~L~~~l~~-------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~  833 (966)
                      ||+++|+|.++++.       +++.++..++.|+++||+|||.   .+|+||||||+||+++.+.  .+++.|||.+...
T Consensus       110 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~dlkp~NIl~~~~~--~~kl~dfg~~~~~  184 (317)
T 2buj_A          110 PFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA---KGYAHRDLKPTNILLGDEG--QPVLMDLGSMNQA  184 (317)
T ss_dssp             ECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTS--CEEECCCSSCEES
T ss_pred             EeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEcCCC--CEEEEecCcchhc
Confidence            99999999999864       8999999999999999999994   4899999999999998654  4788999976542


Q ss_pred             CC---------------CCcCCcccccccccCCCC---CCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhh
Q 002105          834 DS---------------KSINSSAYVAPETKESKD---ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCY  895 (966)
Q Consensus       834 ~~---------------~~~~~~~y~aPE~~~~~~---~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~  895 (966)
                      ..               ...||+.|+|||.+.+..   ++.++|||||||++|||++|+.||................  
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~--  262 (317)
T 2buj_A          185 CIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQN--  262 (317)
T ss_dssp             CEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHC--
T ss_pred             ccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhc--
Confidence            11               124689999999987554   6899999999999999999999985311111111111110  


Q ss_pred             ccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 002105          896 SDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS  954 (966)
Q Consensus       896 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~  954 (966)
                       ...     .|. ....+      .++.+++.+||+.||++|||++||++.|++ +..+
T Consensus       263 -~~~-----~~~-~~~~~------~~l~~li~~~l~~dp~~Rps~~~ll~~L~~-~~~~  307 (317)
T 2buj_A          263 -QLS-----IPQ-SPRHS------SALWQLLNSMMTVDPHQRPHIPLLLSQLEA-LQPP  307 (317)
T ss_dssp             -C-------CCC-CTTSC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHH-TCCC
T ss_pred             -cCC-----CCc-cccCC------HHHHHHHHHHhhcChhhCCCHHHHHHHhhh-cCCC
Confidence             000     010 01111      256678889999999999999999999998 5544

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=6.7e-36  Score=322.91  Aligned_cols=244  Identities=23%  Similarity=0.316  Sum_probs=181.4

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc----cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI----TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~----~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      ....+|+|++|.||+|+.  .+..||||++......    ..+.+.+|+..+.+ ++|||||++++++..++..++||||
T Consensus        11 ~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~   87 (271)
T 3dtc_A           11 LEEIIGIGGFGKVYRAFW--IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAM-LKHPNIIALRGVCLKEPNLCLVMEF   87 (271)
T ss_dssp             EEEEEEEETTEEEEEEEE--TTEEEEEEEC----------CHHHHHHHHHHHHH-CCCTTBCCEEEEECCC--CEEEEEC
T ss_pred             eeeeeccCCCeEEEEEEE--cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHh-cCCCCEeeEEEEEecCCceEEEEEc
Confidence            344578999999999986  4889999987543222    12346677777766 7999999999999999999999999


Q ss_pred             cCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC------CceEEEeccccceec-
Q 002105          763 IEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD------EPHLRLSVPGLAYCT-  833 (966)
Q Consensus       763 ~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~------~~~~~~~~~~~~~~~-  833 (966)
                      +++|+|.++++  .+++..+..++.|+++||+|||.....+|+||||||+||+++.+.      ...++++|||.+... 
T Consensus        88 ~~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~  167 (271)
T 3dtc_A           88 ARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWH  167 (271)
T ss_dssp             CTTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-----
T ss_pred             CCCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcccccc
Confidence            99999999995  589999999999999999999966333499999999999998632      456899999988542 


Q ss_pred             ---CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          834 ---DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       834 ---~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                         .....||+.|+|||.+.+..++.++||||||+++|||+||+.||..... .... .   ......     ..+....
T Consensus       168 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~-~~~~-~---~~~~~~-----~~~~~~~  237 (271)
T 3dtc_A          168 RTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDG-LAVA-Y---GVAMNK-----LALPIPS  237 (271)
T ss_dssp             --------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCH-HHHH-H---HHHTSC-----CCCCCCT
T ss_pred             cccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-HHHH-H---hhhcCC-----CCCCCCc
Confidence               2234689999999999988999999999999999999999999975321 1111 1   111110     0111111


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      ..+      .++.+++.+||+.||++|||+.||++.|++
T Consensus       238 ~~~------~~~~~li~~~l~~~p~~Rps~~e~l~~L~~  270 (271)
T 3dtc_A          238 TCP------EPFAKLMEDCWNPDPHSRPSFTNILDQLTT  270 (271)
T ss_dssp             TCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHC
T ss_pred             ccC------HHHHHHHHHHhcCCcccCcCHHHHHHHHhc
Confidence            222      256678889999999999999999999986

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=2.2e-35  Score=321.59  Aligned_cols=237  Identities=18%  Similarity=0.272  Sum_probs=185.8

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .....+|+|++|.||+|+...++..||+|++....  .....++.+|+..+.++.+|||||++++++.+++..++||||+
T Consensus        14 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv~e~~   93 (289)
T 1x8b_A           14 HELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQNEYC   93 (289)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             hhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEEec
Confidence            34456789999999999998899999999986532  2334567888888888559999999999999999999999999


Q ss_pred             CCCCHHHHHHc-------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC-----------------C
Q 002105          764 EGKELSEVLRN-------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-----------------E  819 (966)
Q Consensus       764 ~~g~L~~~l~~-------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~-----------------~  819 (966)
                      ++|+|.++++.       +++..+..++.||++||+|||.   .+|+||||||+||+++.+.                 .
T Consensus        94 ~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~  170 (289)
T 1x8b_A           94 NGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHS---MSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNK  170 (289)
T ss_dssp             TTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEC--------------------C
T ss_pred             CCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHh---CCEeecCCCHHHEEEcCCCCCcccccccccccccCCc
Confidence            99999999953       7999999999999999999994   5899999999999998542                 3


Q ss_pred             ceEEEeccccceecC--CCCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhc
Q 002105          820 PHLRLSVPGLAYCTD--SKSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYS  896 (966)
Q Consensus       820 ~~~~~~~~~~~~~~~--~~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~  896 (966)
                      ..++++|||.+....  ....||+.|+|||.+.+. .++.++|||||||++|||++|++|+...    ... ....   .
T Consensus       171 ~~~kl~Dfg~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~----~~~-~~~~---~  242 (289)
T 1x8b_A          171 VMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG----DQW-HEIR---Q  242 (289)
T ss_dssp             CCEEECCCTTCEETTCSCCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS----HHH-HHHH---T
T ss_pred             eEEEEcccccccccCCccccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch----hHH-HHHH---c
Confidence            467899999886533  334689999999998765 5678999999999999999999876432    111 1111   1


Q ss_pred             cCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          897 DCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       897 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       ...     +.+....+      .++.+++.+|++.||++|||+.|+++
T Consensus       243 -~~~-----~~~~~~~~------~~~~~li~~~l~~dp~~Rps~~~ll~  279 (289)
T 1x8b_A          243 -GRL-----PRIPQVLS------QEFTELLKVMIHPDPERRPSAMALVK  279 (289)
T ss_dssp             -TCC-----CCCSSCCC------HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -CCC-----CCCCcccC------HHHHHHHHHHhCCCcccCCCHHHHhh
Confidence             111     11122222      24667788999999999999999875

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=8.5e-36  Score=333.91  Aligned_cols=245  Identities=21%  Similarity=0.366  Sum_probs=190.8

Q ss_pred             cccccCCCCCccEEEEEEEe-----cCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSL-----ANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~-----~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      .....+|+|++|.||+|+..     .++..||||++..... ...+.+.+|+..+.+ ++|||||+++++|.+++..++|
T Consensus        50 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~~~lv  128 (343)
T 1luf_A           50 EYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAE-FDNPNIVKLLGVCAVGKPMCLL  128 (343)
T ss_dssp             EEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHT-CCCTTBCCEEEEECSSSSCEEE
T ss_pred             eeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHh-CCCCCEEEEEEEEccCCceEEE
Confidence            44556789999999999986     3447899998864322 223457788888877 6999999999999999999999


Q ss_pred             EEccCCCCHHHHHHc---------------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcE
Q 002105          760 YEYIEGKELSEVLRN---------------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKV  812 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~---------------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Ni  812 (966)
                      |||+++|+|.++++.                           +++.++..++.||++||+|||   +.+|+||||||+||
T Consensus       129 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NI  205 (343)
T 1luf_A          129 FEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLATRNC  205 (343)
T ss_dssp             EECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGE
T ss_pred             EecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceE
Confidence            999999999999853                           788999999999999999999   45899999999999


Q ss_pred             EEcCCCCceEEEeccccceec--------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCc
Q 002105          813 IVDGKDEPHLRLSVPGLAYCT--------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGV  883 (966)
Q Consensus       813 ll~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~  883 (966)
                      +++.+.  .++++|||.+...        .....+|+.|+|||++.+..++.++|||||||++|||+| |+.||....  
T Consensus       206 l~~~~~--~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~--  281 (343)
T 1luf_A          206 LVGENM--VVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA--  281 (343)
T ss_dssp             EECGGG--CEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC--
T ss_pred             EECCCC--eEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCC--
Confidence            998654  5789999987531        223457889999999988889999999999999999999 999986532  


Q ss_pred             hhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          884 HESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       884 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      ...+...+.   .. ...     .....++      .++.+++.+||+.||++||++.||++.|+++...
T Consensus       282 ~~~~~~~~~---~~-~~~-----~~~~~~~------~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~  336 (343)
T 1luf_A          282 HEEVIYYVR---DG-NIL-----ACPENCP------LELYNLMRLCWSKLPADRPSFCSIHRILQRMCER  336 (343)
T ss_dssp             HHHHHHHHH---TT-CCC-----CCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC-
T ss_pred             hHHHHHHHh---CC-CcC-----CCCCCCC------HHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhh
Confidence            121212111   11 110     1111222      2566788899999999999999999999995443

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=1.8e-35  Score=331.10  Aligned_cols=234  Identities=18%  Similarity=0.244  Sum_probs=184.8

Q ss_pred             cccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          684 TEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       684 ~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      +......+|+|++|.||+|+...+|+.||+|++....   ....+.+..|...+.+..+|||||++++++.+++..|+||
T Consensus        21 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~  100 (353)
T 2i0e_A           21 DFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM  100 (353)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEEEE
Confidence            3455667899999999999998889999999986532   1223345667777766448999999999999999999999


Q ss_pred             EccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----
Q 002105          761 EYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----  833 (966)
Q Consensus       761 Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----  833 (966)
                      ||++||+|.++++   .+++.....++.||+.||+|||   +.+|+||||||+|||++.++  +++++|||++...    
T Consensus       101 E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g--~vkL~DFG~a~~~~~~~  175 (353)
T 2i0e_A          101 EYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEG--HIKIADFGMCKENIWDG  175 (353)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTS--CEEECCCTTCBCCCCTT
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEEcCCC--cEEEEeCCcccccccCC
Confidence            9999999999996   4899999999999999999999   45899999999999998654  6899999988642    


Q ss_pred             --CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCC
Q 002105          834 --DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH  911 (966)
Q Consensus       834 --~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  911 (966)
                        ....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+..  ...+.+.+.   .. .      +.....
T Consensus       176 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~--~~~~~~~i~---~~-~------~~~p~~  243 (353)
T 2i0e_A          176 VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED--EDELFQSIM---EH-N------VAYPKS  243 (353)
T ss_dssp             CCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHH---HC-C------CCCCTT
T ss_pred             cccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCC--HHHHHHHHH---hC-C------CCCCCC
Confidence              234578999999999999999999999999999999999999997542  111111111   11 0      011112


Q ss_pred             CcchHHHHHHHHHHHHHccCCCCCCCCCH
Q 002105          912 VSSIQNEIVEIMNLALHCTAGDPTARPCA  940 (966)
Q Consensus       912 ~~~~~~~~~~~~~l~~~C~~~~P~~RPt~  940 (966)
                      .+      .++.+++.+|++.||++||++
T Consensus       244 ~s------~~~~~li~~lL~~dP~~R~~~  266 (353)
T 2i0e_A          244 MS------KEAVAICKGLMTKHPGKRLGC  266 (353)
T ss_dssp             SC------HHHHHHHHHHTCSCTTSCTTC
T ss_pred             CC------HHHHHHHHHHhhcCHHHcCCC
Confidence            22      246677889999999999964

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=4.3e-35  Score=324.97  Aligned_cols=241  Identities=22%  Similarity=0.305  Sum_probs=190.2

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc------cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI------TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~------~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      ....+|+|++|.||+|+...+|..||||.+......      ..+++.+|+..+.+ ++|||||++++++.+++..++||
T Consensus        16 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~   94 (321)
T 2a2a_A           16 IGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQ-VLHHNVITLHDVYENRTDVVLIL   94 (321)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHH-CCCTTBCCEEEEEECSSEEEEEE
T ss_pred             EeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHh-CCCCCcceEEEEEecCCEEEEEE
Confidence            345578899999999999889999999998654322      13347788887777 69999999999999999999999


Q ss_pred             EccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC--ceEEEeccccceecC-
Q 002105          761 EYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE--PHLRLSVPGLAYCTD-  834 (966)
Q Consensus       761 Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~--~~~~~~~~~~~~~~~-  834 (966)
                      ||+++|+|.+++..   +++..+..++.|++.||+|||   +.+|+||||||+||+++.+..  ..++++|||.+.... 
T Consensus        95 e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~  171 (321)
T 2a2a_A           95 ELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED  171 (321)
T ss_dssp             CCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCT
T ss_pred             EcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChHHEEEecCCCCcCCEEEccCccceecCc
Confidence            99999999999974   789999999999999999999   458999999999999987653  268999999986532 


Q ss_pred             ----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                          ....||+.|+|||.+.+..++.++|||||||++|||+||+.||..... .+.. ...   .. ... . .++....
T Consensus       172 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-~~~~-~~i---~~-~~~-~-~~~~~~~  243 (321)
T 2a2a_A          172 GVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK-QETL-ANI---TS-VSY-D-FDEEFFS  243 (321)
T ss_dssp             TCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH-HHHH-HHH---HT-TCC-C-CCHHHHT
T ss_pred             cccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCH-HHHH-HHH---Hh-ccc-c-cChhhhc
Confidence                234689999999999999999999999999999999999999975421 1111 111   11 000 0 1111111


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ..+      .++.+++.+|++.||++|||+.|+++
T Consensus       244 ~~~------~~~~~li~~~l~~dp~~Rps~~e~l~  272 (321)
T 2a2a_A          244 HTS------ELAKDFIRKLLVKETRKRLTIQEALR  272 (321)
T ss_dssp             TCC------HHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred             ccC------HHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            122      24667888999999999999999975

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=3.7e-35  Score=328.55  Aligned_cols=235  Identities=20%  Similarity=0.273  Sum_probs=187.2

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|++|.||+|+...+|..||+|.+.....   ...+.+.+|+..+.+ ++|||||++++++.+++..|+||||
T Consensus        44 ~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~~~lv~e~  122 (350)
T 1rdq_E           44 DRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQA-VNFPFLVKLEFSFKDNSNLYMVMEY  122 (350)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTT-CCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             EEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHh-CCCCCCCeEEEEEEcCCEEEEEEcC
Confidence            445567899999999999988999999999864321   223346677777766 6999999999999999999999999


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---CC
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---SK  836 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---~~  836 (966)
                      +++|+|.++++   .+++.....++.||+.||+|||   +.+|+||||||+||+++.++  .++++|||++....   ..
T Consensus       123 ~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g--~~kL~DFg~a~~~~~~~~~  197 (350)
T 1rdq_E          123 VAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQG--YIQVTDFGFAKRVKGRTWT  197 (350)
T ss_dssp             CTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTS--CEEECCCTTCEECSSCBCC
T ss_pred             CCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCccceEEECCCC--CEEEcccccceeccCCccc
Confidence            99999999996   4899999999999999999999   45899999999999998654  57899999987533   34


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchH
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ  916 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  916 (966)
                      ..||+.|+|||++.+..++.++|||||||++|||++|+.||....  ...+.+.+   ... ..      .+....+   
T Consensus       198 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~--~~~~~~~i---~~~-~~------~~p~~~~---  262 (350)
T 1rdq_E          198 LCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ--PIQIYEKI---VSG-KV------RFPSHFS---  262 (350)
T ss_dssp             CEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHH---HHC-CC------CCCTTCC---
T ss_pred             ccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCC--HHHHHHHH---HcC-CC------CCCCCCC---
Confidence            578999999999999999999999999999999999999997542  11111111   111 10      1111222   


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCC-----HHHHH
Q 002105          917 NEIVEIMNLALHCTAGDPTARPC-----ASDVT  944 (966)
Q Consensus       917 ~~~~~~~~l~~~C~~~~P~~RPt-----~~~v~  944 (966)
                         .++.+++.+|++.||++||+     ++||.
T Consensus       263 ---~~~~~li~~lL~~dp~~R~~~~~~~~~ei~  292 (350)
T 1rdq_E          263 ---SDLKDLLRNLLQVDLTKRFGNLKNGVNDIK  292 (350)
T ss_dssp             ---HHHHHHHHHHSCSCTTTCTTSSTTTTHHHH
T ss_pred             ---HHHHHHHHHHhhcCHHhccCCccCCHHHHH
Confidence               24667788999999999998     77775

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=8.3e-35  Score=321.97  Aligned_cols=251  Identities=20%  Similarity=0.300  Sum_probs=179.4

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .....+|+|++|.||+|+...+|..||+|++..... ...+.+.+|+..+.+ ++|||||++++++..++..++||||++
T Consensus         8 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~~~lv~e~~~   86 (317)
T 2pmi_A            8 KQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKE-LKHENIVRLYDVIHTENKLTLVFEFMD   86 (317)
T ss_dssp             -----------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTT-CCBTTBCCEEEEECCTTEEEEEEECCC
T ss_pred             eEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHh-cCCCCcceEEEEEEECCeEEEEEEecC
Confidence            345567999999999999988899999999865432 233557788887777 699999999999999999999999999


Q ss_pred             CCCHHHHHH---------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-
Q 002105          765 GKELSEVLR---------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       765 ~g~L~~~l~---------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-  834 (966)
                       |+|.+++.         .+++..+..++.||++||+|||   ..+|+||||||+||+++.++  .++++|||.+.... 
T Consensus        87 -~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~--~~kl~Dfg~~~~~~~  160 (317)
T 2pmi_A           87 -NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDLKPQNLLINKRG--QLKLGDFGLARAFGI  160 (317)
T ss_dssp             -CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTC--CEEECCCSSCEETTS
T ss_pred             -CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCChHHeEEcCCC--CEEECcCccceecCC
Confidence             69999885         2789999999999999999999   45999999999999998654  57899999986532 


Q ss_pred             -----CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccc-----
Q 002105          835 -----SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTW-----  903 (966)
Q Consensus       835 -----~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  903 (966)
                           ....+|+.|+|||++.+ ..++.++|||||||++|||+||+.||.+... .+.. ..+...........|     
T Consensus       161 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-~~~~-~~i~~~~~~~~~~~~~~~~~  238 (317)
T 2pmi_A          161 PVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTND-EEQL-KLIFDIMGTPNESLWPSVTK  238 (317)
T ss_dssp             CCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHH-HHHHHHHCSCCTTTCGGGGG
T ss_pred             CcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh-HHHH-HHHHHHhCCCChhHhhhhhh
Confidence                 23468999999999876 4689999999999999999999999975422 1111 111111110000000     


Q ss_pred             ---ccccccCCCc-chH---------HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          904 ---VDPFIRGHVS-SIQ---------NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       904 ---~d~~~~~~~~-~~~---------~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         ..+.+..... ...         ....++.+++.+|++.||++|||++|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~  293 (317)
T 2pmi_A          239 LPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH  293 (317)
T ss_dssp             CTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             hhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence               0000000000 000         01135678889999999999999999875

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7e-35  Score=325.52  Aligned_cols=255  Identities=20%  Similarity=0.269  Sum_probs=187.3

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHh-hcCCCceeEEeeEEecC----CeeEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGK-LIMHPNIVRLHGVCRSE----KAAYLV  759 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~-~~~H~niv~l~g~~~~~----~~~~lv  759 (966)
                      +.....+|+|++|.||+|+.  .+..||||++....   ...+..|.+.... .++|||||++++++...    +..++|
T Consensus        39 y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv  113 (337)
T 3mdy_A           39 IQMVKQIGKGRYGEVWMGKW--RGEKVAVKVFFTTE---EASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLI  113 (337)
T ss_dssp             CEEEEEEEEETTEEEEEEEE--TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEEE
T ss_pred             eEEEeEeecCCCeEEEEEEE--CCceEEEEEEeccc---cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEEE
Confidence            34555678999999999986  48899999985432   2233444443333 24899999999999887    789999


Q ss_pred             EEccCCCCHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcC-----CCCeEeecCCCCcEEEcCCCCceEEEecccccee
Q 002105          760 YEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFHC-----SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC  832 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~-----~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~  832 (966)
                      |||+++|+|.++++.  +++..+..++.|++.||+|||..+     .++|+||||||+||+++.+.  .++++|||.+..
T Consensus       114 ~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~--~~kl~Dfg~a~~  191 (337)
T 3mdy_A          114 TDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNG--TCCIADLGLAVK  191 (337)
T ss_dssp             ECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTS--CEEECCCTTCEE
T ss_pred             EeccCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCC--CEEEEeCCCcee
Confidence            999999999999974  899999999999999999999431     33999999999999998654  578999998854


Q ss_pred             cC----------CCCcCCcccccccccCCCCCCCc------chHHHHHHHHHHHHcC----------CCCCCCCCCchhh
Q 002105          833 TD----------SKSINSSAYVAPETKESKDITEK------GDIYGFGLILIDLLTG----------KSPADADFGVHES  886 (966)
Q Consensus       833 ~~----------~~~~~~~~y~aPE~~~~~~~~~~------~Dv~S~Gv~l~el~tg----------~~p~~~~~~~~~~  886 (966)
                      ..          ....||+.|+|||++.+..++.+      +|||||||++|||+||          +.||.........
T Consensus       192 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~  271 (337)
T 3mdy_A          192 FISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPS  271 (337)
T ss_dssp             CC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred             eccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCc
Confidence            21          13468999999999988776665      9999999999999999          6666543222111


Q ss_pred             HHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          887 IVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       887 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      ...+... .....    ..+....... ..+...++.+++.+||+.||++|||+.||++.|+++.+
T Consensus       272 ~~~~~~~-~~~~~----~~~~~~~~~~-~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~  331 (337)
T 3mdy_A          272 YEDMREI-VCIKK----LRPSFPNRWS-SDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSE  331 (337)
T ss_dssp             HHHHHHH-HTTSC----CCCCCCGGGG-GSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             hhhhHHH-Hhhhc----cCccccccch-hhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHh
Confidence            1111111 11111    1111111111 12445568889999999999999999999999999443

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=1.7e-35  Score=326.96  Aligned_cols=248  Identities=19%  Similarity=0.261  Sum_probs=193.5

Q ss_pred             cccccCCCCCccEEEEEEE-----ecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRS-----LANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~-----~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      .....+|+|++|.||+|+.     ..++..||||++..... ...+.+.+|+..+.++-+|||||++++++..++..++|
T Consensus        26 ~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv  105 (313)
T 1t46_A           26 SFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVI  105 (313)
T ss_dssp             EEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred             hHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCcEEE
Confidence            3445678999999999985     34667899999865432 23356778888887733899999999999999999999


Q ss_pred             EEccCCCCHHHHHHc---------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC
Q 002105          760 YEYIEGKELSEVLRN---------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD  818 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~---------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~  818 (966)
                      |||+++|+|.++++.                     +++..+..++.|+++||+|||.   .+|+||||||+||+++.+ 
T Consensus       106 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~-  181 (313)
T 1t46_A          106 TEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNILLTHG-  181 (313)
T ss_dssp             EECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEETT-
T ss_pred             EecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCccceEEEcCC-
Confidence            999999999999962                     7899999999999999999994   589999999999999865 


Q ss_pred             CceEEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHH
Q 002105          819 EPHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVE  889 (966)
Q Consensus       819 ~~~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~  889 (966)
                       ..++++|||.+....        ....+|+.|+|||++.+..++.++|||||||++|||+| |+.||...... ....+
T Consensus       182 -~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~-~~~~~  259 (313)
T 1t46_A          182 -RITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVD-SKFYK  259 (313)
T ss_dssp             -TEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSS-HHHHH
T ss_pred             -CCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccch-hHHHH
Confidence             467899999876432        12345678999999988899999999999999999999 99998764322 22212


Q ss_pred             HHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 002105          890 WARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS  954 (966)
Q Consensus       890 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~  954 (966)
                      ......         .+......+      .++.+++.+|++.||++|||+.||+++|++.+...
T Consensus       260 ~~~~~~---------~~~~~~~~~------~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  309 (313)
T 1t46_A          260 MIKEGF---------RMLSPEHAP------AEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISES  309 (313)
T ss_dssp             HHHHTC---------CCCCCTTSC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred             HhccCC---------CCCCcccCC------HHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHh
Confidence            221111         111111122      25667888999999999999999999999966543

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=2.3e-35  Score=326.03  Aligned_cols=243  Identities=21%  Similarity=0.324  Sum_probs=190.6

Q ss_pred             ccccCCCCCccEEEEEEEe-----cCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSL-----ANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~-----~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      ....+|+|++|.||+|+..     .++..||||++..... ...+.+.+|+..+.+ ++|||||++++++.+++..++||
T Consensus        27 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~~~lv~  105 (314)
T 2ivs_A           27 LGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQ-VNHPHVIKLYGACSQDGPLLLIV  105 (314)
T ss_dssp             EEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTT-CCCTTBCCEEEEECSSSSCEEEE
T ss_pred             eeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhh-CCCCceeeEEEEEecCCceEEEE
Confidence            3445788999999999873     3457899998764322 223457778887777 69999999999999999999999


Q ss_pred             EccCCCCHHHHHHc---------------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEE
Q 002105          761 EYIEGKELSEVLRN---------------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI  813 (966)
Q Consensus       761 Ey~~~g~L~~~l~~---------------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nil  813 (966)
                      ||+++|+|.++++.                           +++.++..++.|+++||+|||.   .+|+||||||+||+
T Consensus       106 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dikp~NIl  182 (314)
T 2ivs_A          106 EYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAE---MKLVHRDLAARNIL  182 (314)
T ss_dssp             ECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEE
T ss_pred             eecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHH---CCCcccccchheEE
Confidence            99999999999963                           7889999999999999999994   58999999999999


Q ss_pred             EcCCCCceEEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCch
Q 002105          814 VDGKDEPHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVH  884 (966)
Q Consensus       814 l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~  884 (966)
                      ++.+  ..++++|||.+....        ....+|+.|+|||.+.+..++.++|||||||++|||+| |+.||.....  
T Consensus       183 i~~~--~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~--  258 (314)
T 2ivs_A          183 VAEG--RKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPP--  258 (314)
T ss_dssp             EETT--TEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG--
T ss_pred             EcCC--CCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCH--
Confidence            9965  458999999876432        22356788999999988889999999999999999999 9999875422  


Q ss_pred             hhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          885 ESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       885 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      +.+.+....   . .     .+.....++      .++.+++.+|++.||++|||+.||++.|++++.
T Consensus       259 ~~~~~~~~~---~-~-----~~~~~~~~~------~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~  311 (314)
T 2ivs_A          259 ERLFNLLKT---G-H-----RMERPDNCS------EEMYRLMLQCWKQEPDKRPVFADISKDLEKMMV  311 (314)
T ss_dssp             GGHHHHHHT---T-C-----CCCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhc---C-C-----cCCCCccCC------HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            222222211   1 0     011111122      256678889999999999999999999998654

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=5.5e-35  Score=325.53  Aligned_cols=235  Identities=21%  Similarity=0.366  Sum_probs=181.6

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCC----------
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK----------  754 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~----------  754 (966)
                      .....+|+|++|.||+|+...+|..||||++.... ....+.+.+|+..+.+ ++|||||+++++|.+.+          
T Consensus         9 ~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~hpniv~~~~~~~~~~~~~~~~~~~~   87 (332)
T 3qd2_B            9 EPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAK-LEHPGIVRYFNAWLETPPEKWQEEMDE   87 (332)
T ss_dssp             EEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTS-CCCTTBCCEEEEEEECCSCHHHHHHHC
T ss_pred             ceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHh-CCCCCEeeEEEEEEEeccchhhhhhhh
Confidence            34456789999999999998899999999986433 2334567888888887 69999999999986543          


Q ss_pred             -----------------------------------------------eeEEEEEccCCCCHHHHHHc------CCHHHHH
Q 002105          755 -----------------------------------------------AAYLVYEYIEGKELSEVLRN------LSWERRR  781 (966)
Q Consensus       755 -----------------------------------------------~~~lv~Ey~~~g~L~~~l~~------l~~~~~~  781 (966)
                                                                     ..++|||||++|+|.++++.      .++..+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~  167 (332)
T 3qd2_B           88 IWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCL  167 (332)
T ss_dssp             --------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHHHHH
T ss_pred             hhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhHHHH
Confidence                                                           37999999999999999963      6777889


Q ss_pred             HHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC------------------CCcCCccc
Q 002105          782 KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS------------------KSINSSAY  843 (966)
Q Consensus       782 ~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~y  843 (966)
                      .++.||+.||+|||   +.+|+||||||+||+++.+.  .++++|||.+.....                  ...||+.|
T Consensus       168 ~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~--~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y  242 (332)
T 3qd2_B          168 HIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDD--VVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLY  242 (332)
T ss_dssp             HHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTC--CEEECCCTTCEECSCC--------------CCCSCC-CGGG
T ss_pred             HHHHHHHHHHHHHH---hCCeeecCCCcccEEEeCCC--CEEEeecCcccccccchhhccccccccccccccccCCCcCc
Confidence            99999999999999   45899999999999999654  578999999765322                  23589999


Q ss_pred             ccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHH
Q 002105          844 VAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIM  923 (966)
Q Consensus       844 ~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  923 (966)
                      +|||++.+..++.++|||||||++|||+||..|+..    ..   +..... .....     |.      .......++.
T Consensus       243 ~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~----~~---~~~~~~-~~~~~-----~~------~~~~~~~~~~  303 (332)
T 3qd2_B          243 MSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQME----RV---RIITDV-RNLKF-----PL------LFTQKYPQEH  303 (332)
T ss_dssp             SCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHH----HH---HHHHHH-HTTCC-----CH------HHHHHCHHHH
T ss_pred             cChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhH----HH---HHHHHh-hccCC-----Cc------ccccCChhHH
Confidence            999999999999999999999999999999877421    11   111110 01100     00      0122234557


Q ss_pred             HHHHHccCCCCCCCCCHHHHHH
Q 002105          924 NLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       924 ~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +++.+|++.||++|||++|+++
T Consensus       304 ~li~~~l~~~p~~Rps~~~~l~  325 (332)
T 3qd2_B          304 MMVQDMLSPSPTERPEATDIIE  325 (332)
T ss_dssp             HHHHHHHCSSGGGSCCHHHHHH
T ss_pred             HHHHHHccCCCCcCCCHHHHhh
Confidence            7889999999999999999875

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=4.4e-35  Score=320.26  Aligned_cols=252  Identities=21%  Similarity=0.300  Sum_probs=184.4

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc--cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .....+|+|++|.||+|+...++..||||++......  ..+.+.+|+..+.+ ++|||||++++++.+++..++||||+
T Consensus         5 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~   83 (292)
T 3o0g_A            5 EKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKE-LKHKNIVRLHDVLHSDKKLTLVFEFC   83 (292)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTT-CCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             eeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhc-CCCCCEeeEEeEEEeCCEEEEEEecC
Confidence            3445678999999999999889999999998654322  22456778877777 69999999999999999999999999


Q ss_pred             CCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          764 EGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       764 ~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      ++ ++.+++.    .+++..+..++.|++.||+|||.   .+|+||||||+||+++.+.  .++++|||.+....     
T Consensus        84 ~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~---~~ivH~dikp~Nil~~~~~--~~kl~Dfg~~~~~~~~~~~  157 (292)
T 3o0g_A           84 DQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKPQNLLINRNG--ELKLANFGLARAFGIPVRC  157 (292)
T ss_dssp             SE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTS--CEEECCCTTCEECCSCCSC
T ss_pred             CC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCC--CEEEeecccceecCCcccc
Confidence            96 5555543    48999999999999999999994   5899999999999999654  57899999986432     


Q ss_pred             -CCCcCCcccccccccCCCC-CCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccc-------
Q 002105          835 -SKSINSSAYVAPETKESKD-ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVD-------  905 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~-~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-------  905 (966)
                       ....+|+.|+|||++.+.. ++.++|||||||++|||+||..|+.......+......+. ........|..       
T Consensus       158 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~  236 (292)
T 3o0g_A          158 YSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRL-LGTPTEEQWPSMTKLPDY  236 (292)
T ss_dssp             CCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHH-HCCCCTTTCTTGGGSTTC
T ss_pred             ccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHH-hCCCChhhhhhhcccccc
Confidence             2346799999999987765 7999999999999999999988865433322222222221 11100000000       


Q ss_pred             -c--c---ccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          906 -P--F---IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       906 -~--~---~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       +  .   .............++.+++.+|++.||++|||++|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  282 (292)
T 3o0g_A          237 KPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             CCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence             0  0   00000000011234567888999999999999999875

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=3e-35  Score=324.58  Aligned_cols=244  Identities=20%  Similarity=0.331  Sum_probs=183.9

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|++|.||+|+...+|..||||++.....   ...+.+.+|+..+.+ ++||||+++++++..++..++||||
T Consensus        35 ~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~  113 (310)
T 2wqm_A           35 RIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQ-LNHPNVIKYYASFIEDNELNIVLEL  113 (310)
T ss_dssp             EEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHT-CCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             EEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHh-CCCCCEeeEEEEEEcCCcEEEEEec
Confidence            445567899999999999988999999999864322   223457788888777 6999999999999999999999999


Q ss_pred             cCCCCHHHHHHc-------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-
Q 002105          763 IEGKELSEVLRN-------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       763 ~~~g~L~~~l~~-------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-  834 (966)
                      +++|+|.+++..       +++..+..++.|+++||+|||   ..+|+||||||+||+++.+.  .+++.|||.+.... 
T Consensus       114 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIl~~~~~--~~kl~Dfg~~~~~~~  188 (310)
T 2wqm_A          114 ADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATG--VVKLGDLGLGRFFSS  188 (310)
T ss_dssp             CCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTS--CEEECCC--------
T ss_pred             CCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCcHHHEEEcCCC--CEEEEeccceeeecC
Confidence            999999999863       889999999999999999999   45899999999999998654  57899999875422 


Q ss_pred             -----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccccc
Q 002105          835 -----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       835 -----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                           ....+++.|+|||++.+..++.++|||||||++|||+||+.||...........+...   . ...    .+...
T Consensus       189 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~---~-~~~----~~~~~  260 (310)
T 2wqm_A          189 KTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIE---Q-CDY----PPLPS  260 (310)
T ss_dssp             ----------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHH---T-TCS----CCCCT
T ss_pred             CCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhh---c-ccC----CCCcc
Confidence                 2235789999999999999999999999999999999999998754322211111111   1 111    11111


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      ..++      .++.+++.+||+.||++|||++||++.|++
T Consensus       261 ~~~~------~~l~~li~~~l~~dp~~Rps~~~il~~l~~  294 (310)
T 2wqm_A          261 DHYS------EELRQLVNMCINPDPEKRPDVTYVYDVAKR  294 (310)
T ss_dssp             TTSC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             cccC------HHHHHHHHHHcCCChhhCCCHHHHHHHHHH
Confidence            1122      256678889999999999999999999998

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=1.8e-35  Score=343.40  Aligned_cols=243  Identities=19%  Similarity=0.301  Sum_probs=188.5

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|+|+||.||+|+. ..+..||||++.... ...++|.+|+..+.+ ++|||||++++++.+ +..++|||||++|+
T Consensus       189 ~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~-~~~~iv~e~~~~gs  264 (452)
T 1fmk_A          189 EVKLGQGCFGEVWMGTW-NGTTRVAIKTLKPGT-MSPEAFLQEAQVMKK-LRHEKLVQLYAVVSE-EPIYIVTEYMSKGS  264 (452)
T ss_dssp             EEEEEECSSCEEEEEEE-TTTEEEEEEECCTTS-SCHHHHHHHHHHHHH-CCCTTBCCEEEEECS-SSCEEEECCCTTCB
T ss_pred             eeeecCCCCeEEEEEEE-CCCceEEEEEeccCC-CCHHHHHHHHHHHHh-CCCCCEeeEEEEEcC-CceEEEehhhcCCC
Confidence            34578899999999998 566789999876433 334578888888877 699999999999976 67899999999999


Q ss_pred             HHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-------C
Q 002105          768 LSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------S  835 (966)
Q Consensus       768 L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-------~  835 (966)
                      |.++++     .+++.++..++.|||.||+|||   +.+|+||||||+|||++.+  ..++++|||++....       .
T Consensus       265 L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~--~~~kl~DfG~a~~~~~~~~~~~~  339 (452)
T 1fmk_A          265 LLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGEN--LVCKVADFGLARLIEDNEYTARQ  339 (452)
T ss_dssp             HHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGG--GCEEECCCCTTC-----------
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEECCC--CCEEECCCccceecCCCceeccc
Confidence            999995     2899999999999999999999   4589999999999999865  457899999986422       1


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ...+++.|+|||.+.+..++.++|||||||++|||+| |+.||.+..  ...+.+.+.   .....      .....++ 
T Consensus       340 ~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~--~~~~~~~i~---~~~~~------~~~~~~~-  407 (452)
T 1fmk_A          340 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQVE---RGYRM------PCPPECP-  407 (452)
T ss_dssp             ---CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC--HHHHHHHHH---TTCCC------CCCTTSC-
T ss_pred             CCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCC--HHHHHHHHH---cCCCC------CCCCCCC-
Confidence            2345678999999988899999999999999999999 999987532  111212221   11111      0111222 


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCCc
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISSC  956 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~~~  956 (966)
                           .++.+++.+||+.||++|||+++|++.|++++.....
T Consensus       408 -----~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~~  444 (452)
T 1fmk_A          408 -----ESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEP  444 (452)
T ss_dssp             -----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCC
T ss_pred             -----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCCc
Confidence                 2566788899999999999999999999996554433

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.6e-35  Score=330.14  Aligned_cols=248  Identities=22%  Similarity=0.254  Sum_probs=191.0

Q ss_pred             ccccccCCCCCccEEEEEEEe-----cCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSL-----ANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL  758 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~-----~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~l  758 (966)
                      ......+|+|++|.||+|+..     .++..||||++.... ....+.+.+|+..+.++-+|||||++++++..++..++
T Consensus        47 y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l  126 (344)
T 1rjb_A           47 LEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYL  126 (344)
T ss_dssp             EEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             ceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCccEE
Confidence            344556799999999999973     355689999986432 23345678888888873389999999999999999999


Q ss_pred             EEEccCCCCHHHHHHc--------------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcE
Q 002105          759 VYEYIEGKELSEVLRN--------------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKV  812 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~~--------------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Ni  812 (966)
                      ||||+++|+|.++++.                          ++|..+..++.||+.||+|||   ..+|+||||||+||
T Consensus       127 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NI  203 (344)
T 1rjb_A          127 IFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNV  203 (344)
T ss_dssp             EEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCSGGGE
T ss_pred             EEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhE
Confidence            9999999999999963                          689999999999999999999   45999999999999


Q ss_pred             EEcCCCCceEEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCc
Q 002105          813 IVDGKDEPHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGV  883 (966)
Q Consensus       813 ll~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~  883 (966)
                      +++.+  ..++++|||.+....        ....+|+.|+|||.+.+..++.++|||||||++|||+| |+.||......
T Consensus       204 ll~~~--~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~  281 (344)
T 1rjb_A          204 LVTHG--KVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVD  281 (344)
T ss_dssp             EEETT--TEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS
T ss_pred             EEcCC--CcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCcH
Confidence            99865  468999999885421        12345778999999988899999999999999999998 99999764322


Q ss_pred             hhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          884 HESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       884 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                       ..........         ..+......+      .++.+++.+||+.||++|||+.||++.|+..+..
T Consensus       282 -~~~~~~~~~~---------~~~~~~~~~~------~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~  335 (344)
T 1rjb_A          282 -ANFYKLIQNG---------FKMDQPFYAT------EEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLAD  335 (344)
T ss_dssp             -HHHHHHHHTT---------CCCCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             -HHHHHHHhcC---------CCCCCCCCCC------HHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence             2221222211         0111111111      2566788899999999999999999999985443

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.3e-35  Score=327.55  Aligned_cols=232  Identities=16%  Similarity=0.200  Sum_probs=187.2

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc--------cccchHHHHHHHHhhcCCCceeEEeeEEecCCee
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--------TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAA  756 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--------~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~  756 (966)
                      +.....+|+|++|.||+|+...++..||||++......        ..+.+.+|+..+.+ ++|||||++++++.+++..
T Consensus        26 y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~Iv~~~~~~~~~~~~  104 (335)
T 3dls_A           26 YSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSR-VEHANIIKVLDIFENQGFF  104 (335)
T ss_dssp             EEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTT-CCCTTBCCEEEEEECSSEE
T ss_pred             eEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHh-CCCCCEeeEEEEEeeCCEE
Confidence            34556679999999999999899999999998754321        23467788888887 6999999999999999999


Q ss_pred             EEEEEccCCC-CHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee
Q 002105          757 YLVYEYIEGK-ELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC  832 (966)
Q Consensus       757 ~lv~Ey~~~g-~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~  832 (966)
                      ++||||+.+| +|.++++   .+++..+..++.|++.||+|||   ..+|+||||||+||+++.+.  .++++|||.+..
T Consensus       105 ~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~--~~kL~Dfg~a~~  179 (335)
T 3dls_A          105 QLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDF--TIKLIDFGSAAY  179 (335)
T ss_dssp             EEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTS--CEEECCCTTCEE
T ss_pred             EEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEEeccCHHHEEEcCCC--cEEEeecccceE
Confidence            9999999877 9999996   4899999999999999999999   45899999999999998654  578999999865


Q ss_pred             cCC-----CCcCCcccccccccCCCCC-CCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccc
Q 002105          833 TDS-----KSINSSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDP  906 (966)
Q Consensus       833 ~~~-----~~~~~~~y~aPE~~~~~~~-~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  906 (966)
                      ...     ...||+.|+|||++.+..+ +.++|||||||++|||++|+.||....   +.        .. ...   ..|
T Consensus       180 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~---~~--------~~-~~~---~~~  244 (335)
T 3dls_A          180 LERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELE---ET--------VE-AAI---HPP  244 (335)
T ss_dssp             CCTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGG---GG--------TT-TCC---CCS
T ss_pred             CCCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHH---HH--------Hh-hcc---CCC
Confidence            322     2358999999999988877 789999999999999999999986421   00        00 000   001


Q ss_pred             cccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          907 FIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       907 ~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                         ...+      .++.+++.+|++.||++|||++|+++.
T Consensus       245 ---~~~~------~~l~~li~~~L~~dP~~Rps~~ell~h  275 (335)
T 3dls_A          245 ---YLVS------KELMSLVSGLLQPVPERRTTLEKLVTD  275 (335)
T ss_dssp             ---SCCC------HHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred             ---cccC------HHHHHHHHHHccCChhhCcCHHHHhcC
Confidence               1111      246678889999999999999999864

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=2e-35  Score=328.54  Aligned_cols=248  Identities=19%  Similarity=0.285  Sum_probs=189.6

Q ss_pred             ccccccCCCCCccEEEEEE-----EecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEE
Q 002105          685 EENLTSRGKKGVSSSYKVR-----SLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL  758 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~-----~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~l  758 (966)
                      +.....+|+|++|.||+|+     ...++..||||++.... .....++.+|+..+.+ ++|||||++++++..++..|+
T Consensus        32 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~l  110 (327)
T 2yfx_A           32 ITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISK-FNHQNIVRCIGVSLQSLPRFI  110 (327)
T ss_dssp             CEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHH-CCCTTBCCEEEEECSSSSCEE
T ss_pred             eEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhh-CCCCCCCeEEEEEcCCCCcEE
Confidence            4455668999999999998     44677899999985432 2234467888888877 699999999999999999999


Q ss_pred             EEEccCCCCHHHHHHc----------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC-CceEEEecc
Q 002105          759 VYEYIEGKELSEVLRN----------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVP  827 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~~----------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~-~~~~~~~~~  827 (966)
                      ||||+++|+|.++++.          +++..+..++.|++.||+|||   +.+|+||||||+||+++.+. ...++++||
T Consensus       111 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~dlkp~NIli~~~~~~~~~kl~Df  187 (327)
T 2yfx_A          111 LMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDF  187 (327)
T ss_dssp             EEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECCC
T ss_pred             EEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCcCCHhHEEEecCCCcceEEECcc
Confidence            9999999999999962          789999999999999999999   45899999999999998543 345789999


Q ss_pred             ccceec--------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccC
Q 002105          828 GLAYCT--------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDC  898 (966)
Q Consensus       828 ~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  898 (966)
                      |.+...        .....+|+.|+|||++.+..++.++|||||||++|||+| |+.||....  ...+.+++.   ...
T Consensus       188 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~--~~~~~~~~~---~~~  262 (327)
T 2yfx_A          188 GMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKS--NQEVLEFVT---SGG  262 (327)
T ss_dssp             HHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--HHHHHHHHH---TTC
T ss_pred             ccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcC--HHHHHHHHh---cCC
Confidence            987531        122356889999999988899999999999999999999 999986532  222222221   111


Q ss_pred             cccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          899 HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       899 ~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      .      +.....++      .++.+++.+||+.||++||++.||++.|+.+...
T Consensus       263 ~------~~~~~~~~------~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~  305 (327)
T 2yfx_A          263 R------MDPPKNCP------GPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD  305 (327)
T ss_dssp             C------CCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             C------CCCCCCCC------HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence            1      00111122      2566788899999999999999999999985443

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=3.7e-35  Score=319.62  Aligned_cols=239  Identities=23%  Similarity=0.332  Sum_probs=184.8

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ....+|+|++|.||+++...++..||+|++..... ...+.+.+|+..+.+ ++|||||++++++.+.+..++||||+++
T Consensus        26 ~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~~~lv~e~~~~  104 (285)
T 3is5_A           26 FKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKS-LDHPNIIKIFEVFEDYHNMYIVMETCEG  104 (285)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHT-CCCTTBCCEEEEEECSSEEEEEECCCSC
T ss_pred             ecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHh-CCCchHHhHHHheecCCeEEEEEEeCCC
Confidence            34457889999999999988999999999875432 234567788888777 6999999999999999999999999999


Q ss_pred             CCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC-CCceEEEeccccceec----
Q 002105          766 KELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK-DEPHLRLSVPGLAYCT----  833 (966)
Q Consensus       766 g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~-~~~~~~~~~~~~~~~~----  833 (966)
                      |+|.+++.       .+++..+..++.|+++||+|||   +.+|+||||||+||+++.+ ....++++|||.+...    
T Consensus       105 ~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~  181 (285)
T 3is5_A          105 GELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDE  181 (285)
T ss_dssp             CBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-----
T ss_pred             CcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcc
Confidence            99999883       4899999999999999999999   4589999999999999653 3456899999988542    


Q ss_pred             -CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          834 -DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       834 -~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                       .....||+.|+|||.+. ..++.++|||||||++|||++|+.||....  ..........  .......    . ....
T Consensus       182 ~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~--~~~~~~~~~~--~~~~~~~----~-~~~~  251 (285)
T 3is5_A          182 HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTS--LEEVQQKATY--KEPNYAV----E-CRPL  251 (285)
T ss_dssp             -----CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHH--CCCCCCC-------CCC
T ss_pred             cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCC--HHHHHhhhcc--CCccccc----c-cCcC
Confidence             23346899999999886 568999999999999999999999997532  1111111111  1100000    0 0011


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         .   .++.+++.+|++.||++|||+.||++
T Consensus       252 ---~---~~~~~li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          252 ---T---PQAVDLLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             ---C---HHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             ---C---HHHHHHHHHHccCChhhCcCHHHHhc
Confidence               1   24567888999999999999999975

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.2e-34  Score=328.39  Aligned_cols=348  Identities=16%  Similarity=0.131  Sum_probs=211.0

Q ss_pred             CCCCCCCCCCCc-ccceeeCCCCCEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECC
Q 002105           40 LSNWDSSVTFCK-WNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLS  118 (966)
Q Consensus        40 l~~w~~~~~~c~-w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls  118 (966)
                      +++|....+||. |.+..|....    +.+............-..++++++|++++|.+. .+|..++..+++|++|+|+
T Consensus         3 ~~~~~~~~~C~~~~~~~~c~~~~----~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~   77 (390)
T 3o6n_A            3 VKPRQPEYKCIDSNLQYDCVFYD----VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN   77 (390)
T ss_dssp             ----CCEECBCC------EEEES----CEECSSCCCCEESCSSGGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECT
T ss_pred             cCCCCCccceehhhhhhccceee----eeeecccccccccccccccCCceEEEecCCchh-hCChhHhcccccCcEEECC
Confidence            578987767774 4444442111    111221112222223345789999999999997 7999888888999999999


Q ss_pred             CCCCCCCC--CCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccC
Q 002105          119 NNNFTGPV--PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSI  196 (966)
Q Consensus       119 ~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  196 (966)
                      +|.+++..  .++.+++|++|+|++|.+++..|..|+.+++|++|+|++|.+....+..|.++++|++|++++|.+.+..
T Consensus        78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  157 (390)
T 3o6n_A           78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE  157 (390)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence            99887643  3577888888888888888777777888888888888888877544444677778888888877777766


Q ss_pred             CcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCC
Q 002105          197 PREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLK  276 (966)
Q Consensus       197 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  276 (966)
                      |..+..+++|++|++++|.+++.   .++.+++|++|++++|.+++.     ...++|++|++++|.+... |..  ..+
T Consensus       158 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~  226 (390)
T 3o6n_A          158 DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNV  226 (390)
T ss_dssp             TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCS
T ss_pred             hhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccc
Confidence            66777777777777777777643   245566677777776666532     2223556666666655432 221  124


Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEcc
Q 002105          277 SLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLS  356 (966)
Q Consensus       277 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls  356 (966)
                      +|+.|++++|.+++.  ..+..+                        ++|++|++++|.+++..|..+..+++|+.|+|+
T Consensus       227 ~L~~L~l~~n~l~~~--~~l~~l------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  280 (390)
T 3o6n_A          227 ELTILKLQHNNLTDT--AWLLNY------------------------PGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS  280 (390)
T ss_dssp             SCCEEECCSSCCCCC--GGGGGC------------------------TTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred             cccEEECCCCCCccc--HHHcCC------------------------CCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence            455555555555432  334444                        444455555554444444444445555555555


Q ss_pred             CCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCC
Q 002105          357 TNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSG  434 (966)
Q Consensus       357 ~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~  434 (966)
                      +|.+++ +|..+..+++|+.|++++|+++ .+|..+..+++|++|++++|+++...   +..+++|+.|++++|.++.
T Consensus       281 ~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          281 NNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             SSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred             CCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence            555443 2333344455555555555555 34445566667777777777766542   5566777777777777764

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=9.2e-35  Score=320.63  Aligned_cols=250  Identities=21%  Similarity=0.292  Sum_probs=184.0

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .....+|+|++|.||+|+. .+|..||+|++.....  ...+.+.+|+..+.+ ++|||||++++++.+++..++||||+
T Consensus        24 ~~~~~lG~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~~~lv~e~~  101 (311)
T 3niz_A           24 QKLEKVGEGTYGVVYKAKD-SQGRIVALKRIRLDAEDEGIPSTAIREISLLKE-LHHPNIVSLIDVIHSERCLTLVFEFM  101 (311)
T ss_dssp             EEEEEEEECSSCEEEEEEE-TTSCEEEEEEEC------CHHHHHHHHHHHHHH-CCCTTBCCEEEEECCSSCEEEEEECC
T ss_pred             HhhhhccCCCCeEEEEEEE-CCCCEEEEEEEecccccchhhHHHHHHHHHHHH-cCCCCEeeeeeEEccCCEEEEEEcCC
Confidence            4455679999999999998 6799999999854322  123457788888877 69999999999999999999999999


Q ss_pred             CCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          764 EGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       764 ~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      + |+|.+++..    +++.....++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||.+....     
T Consensus       102 ~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIl~~~~~--~~kl~Dfg~a~~~~~~~~~  175 (311)
T 3niz_A          102 E-KDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDG--ALKLADFGLARAFGIPVRS  175 (311)
T ss_dssp             S-EEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTC--CEEECCCTTCEETTSCCC-
T ss_pred             C-CCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCchHhEEECCCC--CEEEccCcCceecCCCccc
Confidence            9 588888753    889999999999999999999   45999999999999998664  57899999986532     


Q ss_pred             -CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccc--------
Q 002105          835 -SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWV--------  904 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  904 (966)
                       ....+|+.|+|||++.+ ..++.++||||+||++|||+||+.||.+.... +....... .........|.        
T Consensus       176 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~-~~~~~i~~-~~~~~~~~~~~~~~~~~~~  253 (311)
T 3niz_A          176 YTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDD-DQLPKIFS-ILGTPNPREWPQVQELPLW  253 (311)
T ss_dssp             --CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTT-THHHHHHH-HHCCCCTTTSGGGTTSHHH
T ss_pred             ccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHH-HHCCCChHHhhhhhccchh
Confidence             23467999999999876 56899999999999999999999999764332 22212111 11110000000        


Q ss_pred             -cccccCCCc-chH----HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          905 -DPFIRGHVS-SIQ----NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       905 -d~~~~~~~~-~~~----~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       +........ ...    ....++.+++.+|++.||++|||++|+++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  300 (311)
T 3niz_A          254 KQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN  300 (311)
T ss_dssp             HSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             hhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence             000000000 000    01135677889999999999999999875

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=3.7e-35  Score=328.65  Aligned_cols=237  Identities=23%  Similarity=0.327  Sum_probs=185.8

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc---ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|++|.||+|+...++..||||++.......   .+.+.+|+..+.+ ++|||||+++++|..++..++||||
T Consensus        57 ~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~-l~hpniv~~~~~~~~~~~~~lv~e~  135 (348)
T 1u5q_A           57 SDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQK-LRHPNTIQYRGCYLREHTAWLVMEY  135 (348)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHH-CCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             eeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHh-CCCCCEeeEEEEEEECCeEEEEEec
Confidence            34456799999999999998899999999986543222   2457788888877 6999999999999999999999999


Q ss_pred             cCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec--CCC
Q 002105          763 IEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT--DSK  836 (966)
Q Consensus       763 ~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~--~~~  836 (966)
                      ++ |+|.+++.    .+++..+..++.|+++||+|||.   .+|+||||||+||+++.+  ..++++|||.+...  ...
T Consensus       136 ~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~--~~~kL~DfG~a~~~~~~~~  209 (348)
T 1u5q_A          136 CL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEP--GLVKLGDFGSASIMAPANS  209 (348)
T ss_dssp             CS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETT--TEEEECCCTTCBSSSSBCC
T ss_pred             CC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCC--CCEEEeeccCceecCCCCc
Confidence            98 68888774    48999999999999999999994   489999999999999965  46899999988643  234


Q ss_pred             CcCCcccccccccC---CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccc-cCCC
Q 002105          837 SINSSAYVAPETKE---SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI-RGHV  912 (966)
Q Consensus       837 ~~~~~~y~aPE~~~---~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~  912 (966)
                      ..||+.|+|||++.   ...++.++|||||||++|||+||+.||.... ....+....    ...      .|.. ....
T Consensus       210 ~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~-~~~~~~~~~----~~~------~~~~~~~~~  278 (348)
T 1u5q_A          210 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN-AMSALYHIA----QNE------SPALQSGHW  278 (348)
T ss_dssp             CCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC-HHHHHHHHH----HSC------CCCCCCTTS
T ss_pred             ccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-hHHHHHHHH----hcC------CCCCCCCCC
Confidence            57899999999873   5678999999999999999999999986532 111111111    111      1111 1112


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      +   +   ++.+++.+||+.||++|||++|+++.
T Consensus       279 ~---~---~l~~li~~~l~~dP~~Rps~~~ll~h  306 (348)
T 1u5q_A          279 S---E---YFRNFVDSCLQKIPQDRPTSEVLLKH  306 (348)
T ss_dssp             C---H---HHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred             C---H---HHHHHHHHHcccChhhCcCHHHHhhC
Confidence            2   2   45667789999999999999998753

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=3.7e-35  Score=334.65  Aligned_cols=189  Identities=18%  Similarity=0.234  Sum_probs=158.3

Q ss_pred             cccccCCCC--CccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          686 ENLTSRGKK--GVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       686 ~~~~~~g~~--g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      .....+|+|  |+|.||+|+...+|..||||++.....  ...+.+.+|+..+.+ ++|||||++++++.+++..|+|||
T Consensus        28 ~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~lv~e  106 (389)
T 3gni_B           28 ELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKL-FNHPNIVPYRATFIADNELWVVTS  106 (389)
T ss_dssp             EEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHH-CCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             EEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHh-CCCCCCCcEeEEEEECCEEEEEEE
Confidence            334456677  999999999988999999999865422  122345567766666 799999999999999999999999


Q ss_pred             ccCCCCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec---
Q 002105          762 YIEGKELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT---  833 (966)
Q Consensus       762 y~~~g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~---  833 (966)
                      ||++|+|.+++.     .+++..+..++.||+.||+|||   +.+|+||||||+|||++.+.  .++++|||.+...   
T Consensus       107 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~--~~kl~dfg~~~~~~~~  181 (389)
T 3gni_B          107 FMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDG--KVYLSGLRSNLSMISH  181 (389)
T ss_dssp             CCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTC--CEEECCGGGCEECEET
T ss_pred             ccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCC--CEEEcccccceeeccc
Confidence            999999999985     3889999999999999999999   45899999999999998654  5788899876421   


Q ss_pred             ----------CCCCcCCcccccccccCC--CCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          834 ----------DSKSINSSAYVAPETKES--KDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       834 ----------~~~~~~~~~y~aPE~~~~--~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                                .....||+.|+|||++.+  ..++.++|||||||++|||+||+.||.+.
T Consensus       182 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  240 (389)
T 3gni_B          182 GQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDM  240 (389)
T ss_dssp             TEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             cccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCC
Confidence                      122368889999999887  67999999999999999999999999754

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=4.5e-35  Score=336.32  Aligned_cols=242  Identities=20%  Similarity=0.235  Sum_probs=185.9

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ......+|+|+||.||+|+...+++.||+|++....   ......+.+|...+.+ ++|||||+++++|.+++..|+|||
T Consensus        76 y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~-~~hp~Iv~l~~~~~~~~~~~lV~E  154 (437)
T 4aw2_A           76 FEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVN-GDSKWITTLHYAFQDDNNLYLVMD  154 (437)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHH-SCTTTBCCEEEEEECSSEEEEEEC
T ss_pred             eEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHh-CCCCCEEEEEEEEeeCCEEEEEEe
Confidence            455667899999999999998889999999986532   2233446777777766 799999999999999999999999


Q ss_pred             ccCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----
Q 002105          762 YIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----  833 (966)
Q Consensus       762 y~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----  833 (966)
                      ||+||+|.++++.    +++.....++.||+.||+|||   +.+||||||||+|||+|.++  .++++|||++...    
T Consensus       155 y~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILl~~~g--~vkL~DFGla~~~~~~~  229 (437)
T 4aw2_A          155 YYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNG--HIRLADFGSCLKLMEDG  229 (437)
T ss_dssp             CCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTS--CEEECCCTTCEECCTTS
T ss_pred             cCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeeEcCCC--CEEEcchhhhhhcccCC
Confidence            9999999999963    889999999999999999999   45899999999999999654  5799999988542    


Q ss_pred             ---CCCCcCCcccccccccC-----CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccc
Q 002105          834 ---DSKSINSSAYVAPETKE-----SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVD  905 (966)
Q Consensus       834 ---~~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  905 (966)
                         ....+||+.|||||++.     ...|+.++|||||||++|||+||+.||.+... .+........ .....     -
T Consensus       230 ~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~-~~~~~~i~~~-~~~~~-----~  302 (437)
T 4aw2_A          230 TVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESL-VETYGKIMNH-KERFQ-----F  302 (437)
T ss_dssp             CEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSH-HHHHHHHHTH-HHHCC-----C
T ss_pred             CcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCCh-hHHHHhhhhc-ccccc-----C
Confidence               12357999999999986     56789999999999999999999999975421 1111111100 00000     0


Q ss_pred             ccccCCCcchHHHHHHHHHHHHHccCCCCCC--CCCHHHHHH
Q 002105          906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTA--RPCASDVTK  945 (966)
Q Consensus       906 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~--RPt~~~v~~  945 (966)
                      |......   .+   ++.+++.+|++.+|++  ||+++|+++
T Consensus       303 p~~~~~~---s~---~~~dLi~~lL~~~~~r~~r~~~~eil~  338 (437)
T 4aw2_A          303 PTQVTDV---SE---NAKDLIRRLICSREHRLGQNGIEDFKK  338 (437)
T ss_dssp             CSSCCCS---CH---HHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred             CcccccC---CH---HHHHHHHHHhcccccccCCCCHHHHhC
Confidence            1111112   22   4556667888888887  999999874

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=1.9e-35  Score=328.25  Aligned_cols=246  Identities=18%  Similarity=0.260  Sum_probs=181.3

Q ss_pred             cccccCCCCCccEEEEEEEecCCc---EEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCee----
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDM---QFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAA----  756 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~---~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~----  756 (966)
                      .....+|+|++|.||+|+...++.   .||||++...  .....+.+.+|+..+.+ ++|||||++++++...+..    
T Consensus        26 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~~~  104 (323)
T 3qup_A           26 TLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKE-FDHPHVAKLVGVSLRSRAKGRLP  104 (323)
T ss_dssp             EEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTT-CCCTTBCCCCEEEECC-------
T ss_pred             EEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHH-CCCCceehhhceeeccccccCCC
Confidence            344567899999999999866654   7999987543  22334567888888877 6999999999999877655    


Q ss_pred             --EEEEEccCCCCHHHHHH---------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEe
Q 002105          757 --YLVYEYIEGKELSEVLR---------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLS  825 (966)
Q Consensus       757 --~lv~Ey~~~g~L~~~l~---------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~  825 (966)
                        ++||||+++|+|.+++.         .+++..+..++.|+++||+|||   +.+|+||||||+||+++.+.  .++++
T Consensus       105 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~Dikp~NIli~~~~--~~kl~  179 (323)
T 3qup_A          105 IPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAEDM--TVCVA  179 (323)
T ss_dssp             CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTS--CEEEC
T ss_pred             ccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH---cCCcccCCCCcceEEEcCCC--CEEEe
Confidence              99999999999999985         3899999999999999999999   45899999999999998664  57899


Q ss_pred             ccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhc
Q 002105          826 VPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYS  896 (966)
Q Consensus       826 ~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~  896 (966)
                      |||.+....        ....+++.|+|||.+.+..++.++|||||||++|||+| |+.||..... .+.. ....   .
T Consensus       180 Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~-~~~~-~~~~---~  254 (323)
T 3qup_A          180 DFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIEN-AEIY-NYLI---G  254 (323)
T ss_dssp             CCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG-GGHH-HHHH---T
T ss_pred             eccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccCh-HHHH-HHHh---c
Confidence            999885421        12345778999999999999999999999999999999 8999875422 1111 1111   1


Q ss_pred             cCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 002105          897 DCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS  954 (966)
Q Consensus       897 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~  954 (966)
                      ....      ......+      .++.+++.+|++.||++|||+.|+++.|++++...
T Consensus       255 ~~~~------~~~~~~~------~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~  300 (323)
T 3qup_A          255 GNRL------KQPPECM------EEVYDLMYQCWSADPKQRPSFTCLRMELENILGHL  300 (323)
T ss_dssp             TCCC------CCCTTCC------HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             CCCC------CCCCccC------HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence            1110      0111111      35677889999999999999999999999976653

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=4.2e-35  Score=334.70  Aligned_cols=260  Identities=15%  Similarity=0.181  Sum_probs=194.6

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCC--eeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK--AAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~--~~~lv~Ey~  763 (966)
                      ....+|+|++|.||+|+...+|..||||++...... ..+.+.+|+..+.+ ++|||||++++++...+  ..++|||||
T Consensus        13 i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~hpnIv~~~~~~~~~~~~~~~lv~e~~   91 (396)
T 4eut_A           13 LSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKK-LNHKNIVKLFAIEEETTTRHKVLIMEFC   91 (396)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHH-CCCTTBCCEEEEEECTTTCCEEEEECCC
T ss_pred             EEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHh-cCCCCCCeEEEeeccCCCCeeEEEEecC
Confidence            344578999999999999888999999998654322 23456778877777 69999999999998755  789999999


Q ss_pred             CCCCHHHHHHc------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEE--cCCCCceEEEeccccceecC-
Q 002105          764 EGKELSEVLRN------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIV--DGKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       764 ~~g~L~~~l~~------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill--~~~~~~~~~~~~~~~~~~~~-  834 (966)
                      ++|+|.++++.      +++..+..++.||+.||+|||   +.+|+||||||+||++  +.+....++++|||.+.... 
T Consensus        92 ~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~  168 (396)
T 4eut_A           92 PCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELED  168 (396)
T ss_dssp             TTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCC
T ss_pred             CCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCcCHHHEEEeecCCCceeEEEecCCCceEccC
Confidence            99999999963      899999999999999999999   4589999999999998  22245568999999986532 


Q ss_pred             ----CCCcCCcccccccccCC--------CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc---hhhHHHHHHHhhccCc
Q 002105          835 ----SKSINSSAYVAPETKES--------KDITEKGDIYGFGLILIDLLTGKSPADADFGV---HESIVEWARYCYSDCH  899 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~--------~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~---~~~~~~~~~~~~~~~~  899 (966)
                          ....||+.|+|||++.+        ..++.++|||||||++|||+||+.||......   .+.+....... +...
T Consensus       169 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~-p~~~  247 (396)
T 4eut_A          169 DEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGK-PSGA  247 (396)
T ss_dssp             GGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSC-CTTC
T ss_pred             CCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCC-Cccc
Confidence                23468999999998764        56788999999999999999999998653221   12221211111 0000


Q ss_pred             cc----------ccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          900 LD----------TWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       900 ~~----------~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      ..          .|.+ .+.....-.......+.+++.+|++.||++||+++|+++.+++++.
T Consensus       248 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~  309 (396)
T 4eut_A          248 ISGVQKAENGPIDWSG-DMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILH  309 (396)
T ss_dssp             CEEEECSTTCCEEEES-SCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHT
T ss_pred             chhheeccCCCcccCc-cCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhh
Confidence            00          0100 1111111113344566788899999999999999999999998654

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=6.2e-35  Score=320.69  Aligned_cols=248  Identities=18%  Similarity=0.285  Sum_probs=187.9

Q ss_pred             cccccCCCCCccEEEEEE----EecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecC--CeeEE
Q 002105          686 ENLTSRGKKGVSSSYKVR----SLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE--KAAYL  758 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~----~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~--~~~~l  758 (966)
                      .....+|+|++|.||+|+    ...++..||||++..... ...+.+.+|+..+.+ ++||||+++++++..+  +..++
T Consensus        24 ~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~~~l  102 (302)
T 4e5w_A           24 KRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRN-LYHENIVKYKGICTEDGGNGIKL  102 (302)
T ss_dssp             EEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHT-CCCTTBCCEEEEEEC---CCEEE
T ss_pred             hhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHh-CCCCCeeeeeeEEecCCCceEEE
Confidence            445567999999999998    456889999999864432 223557788888777 6999999999999876  66899


Q ss_pred             EEEccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          759 VYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      ||||+++|+|.++++    .+++..+..++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||.+....
T Consensus       103 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~--~~kl~Dfg~~~~~~  177 (302)
T 4e5w_A          103 IMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEH--QVKIGDFGLTKAIE  177 (302)
T ss_dssp             EEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETT--EEEECCCTTCEECC
T ss_pred             EEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhh---cCCcccCCCchheEEEcCCC--CEEECccccccccc
Confidence            999999999999994    4899999999999999999999   45899999999999998654  68899999876422


Q ss_pred             ---------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCC----------chhhHHHHHHHhh
Q 002105          835 ---------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFG----------VHESIVEWARYCY  895 (966)
Q Consensus       835 ---------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~----------~~~~~~~~~~~~~  895 (966)
                               ....+|+.|+|||.+.+..++.++|||||||++|||+||+.|+.....          .............
T Consensus       178 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (302)
T 4e5w_A          178 TDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLK  257 (302)
T ss_dssp             TTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHH
T ss_pred             CCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHh
Confidence                     234577889999999988999999999999999999999998642110          0000101111111


Q ss_pred             ccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 002105          896 SDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCF  951 (966)
Q Consensus       896 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~  951 (966)
                      ...      ........+      .++.+++.+||+.||++|||++||+++|++++
T Consensus       258 ~~~------~~~~~~~~~------~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          258 EGK------RLPCPPNCP------DEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             TTC------CCCCCTTCC------HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ccC------CCCCCCCCC------HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence            110      000111111      35677888999999999999999999999854

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=9.5e-35  Score=316.18  Aligned_cols=242  Identities=23%  Similarity=0.297  Sum_probs=189.3

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .....+|+|++|.||+|....++..||+|++.....  ...+.+.+|+..+.+ ++||||+++++++..++..++||||+
T Consensus         9 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~~v~e~~   87 (284)
T 3kk8_A            9 DVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRK-LQHPNIVRLHDSIQEESFHYLVFDLV   87 (284)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHH-CCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             hhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHH-cCCCCcCeEEEEEEcCCEEEEEEecC
Confidence            344567899999999999988899999999865432  223456677777777 69999999999999999999999999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC-ceEEEeccccceecC-----
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~-~~~~~~~~~~~~~~~-----  834 (966)
                      ++|+|.+++.   .+++..+..++.|++.||+|||   ..+|+||||||+||+++.+.. ..++++|||.+....     
T Consensus        88 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~  164 (284)
T 3kk8_A           88 TGGELFEDIVAREFYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAW  164 (284)
T ss_dssp             CSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCBC
T ss_pred             CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCccc
Confidence            9999998885   3899999999999999999999   458999999999999986543 458899999986532     


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ....||+.|+|||.+.+..++.++||||||+++|||++|+.||....  ...........    ... ...+.. ...+ 
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~--~~~~~~~~~~~----~~~-~~~~~~-~~~~-  235 (284)
T 3kk8_A          165 HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED--QHRLYAQIKAG----AYD-YPSPEW-DTVT-  235 (284)
T ss_dssp             CCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHT----CCC-CCTTTT-TTSC-
T ss_pred             cCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCc--hhHHHHHHHhc----ccc-CCchhh-cccC-
Confidence            23468999999999999999999999999999999999999986532  11111111110    000 011110 1111 


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                           .++.+++.+|++.||++|||+.|+++
T Consensus       236 -----~~~~~li~~~l~~dp~~Rps~~~~l~  261 (284)
T 3kk8_A          236 -----PEAKSLIDSMLTVNPKKRITADQALK  261 (284)
T ss_dssp             -----HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             -----HHHHHHHHHHcccChhhCCCHHHHhc
Confidence                 24667888999999999999999986

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.2e-34  Score=345.29  Aligned_cols=347  Identities=18%  Similarity=0.167  Sum_probs=222.4

Q ss_pred             CCCCCCCCCCCCc----ccceeeCCCCCEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcE
Q 002105           39 FLSNWDSSVTFCK----WNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRF  114 (966)
Q Consensus        39 ~l~~w~~~~~~c~----w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~  114 (966)
                      .+++|..+.+||.    |.++.|+.  +   ++-.....  .....-..+++++.|++++|.+. .+|+.++..+++|++
T Consensus         8 ~l~~~~~~~~C~~~~~~~~c~~~~~--~---i~~~~~~~--~~~~~~l~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~   79 (597)
T 3oja_B            8 NVKPRQPEYKCIDSNLQYDCVFYDV--H---IDMQTQDV--YFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVEL   79 (597)
T ss_dssp             ---CCCSEECCCCC--CCSEEECSC--E---ECSSCCCC--EESCSSGGGCCCSEEEESSCEES-EECTHHHHHCCCCSE
T ss_pred             cccCCCCCCcCcccCcCceeEecCc--e---eccccccc--ccCcccccCCCceEEEeeCCCCC-CcCHHHHccCCCCcE
Confidence            4678987767774    66666542  1   11111111  11122235788999999999997 789988888889999


Q ss_pred             EECCCCCCCCCC--CCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCC
Q 002105          115 LNLSNNNFTGPV--PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQL  192 (966)
Q Consensus       115 L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l  192 (966)
                      |+|++|.+++..  .++.+++|++|+|++|.+++..|..|+.+++|++|+|++|.+.+..+..|+++++|++|++++|.+
T Consensus        80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l  159 (597)
T 3oja_B           80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL  159 (597)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence            999988888644  357778888888888888877777778888888888888877755555567777777777777777


Q ss_pred             cccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhh
Q 002105          193 IGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI  272 (966)
Q Consensus       193 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l  272 (966)
                      ++..|..|+.+++|++|+|++|.+++.   .++.+++|++|++++|.+++.     ...++|++|++++|.++...+ .+
T Consensus       160 ~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~-~~  230 (597)
T 3oja_B          160 ERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRG-PV  230 (597)
T ss_dssp             CBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEEC-SC
T ss_pred             CCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc-----cCCchhheeeccCCccccccc-cc
Confidence            776666777777777777777776643   244556666666666665532     222345555555555442211 11


Q ss_pred             hcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcE
Q 002105          273 LGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTV  352 (966)
Q Consensus       273 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~  352 (966)
                                                .++|+.|++++|.+++  +.++..+++|+.|+|++|.+++..|..|+.+++|+.
T Consensus       231 --------------------------~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  282 (597)
T 3oja_B          231 --------------------------NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  282 (597)
T ss_dssp             --------------------------CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             --------------------------CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence                                      1345555555555543  234555555555555555555555555555566666


Q ss_pred             EEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCC
Q 002105          353 IDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDL  432 (966)
Q Consensus       353 L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l  432 (966)
                      |+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|+|++|++++..   +..++.|+.|++++|.+
T Consensus       283 L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          283 LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             EECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCE
T ss_pred             EECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCC
Confidence            6666666554 3444455566666666666666 45666677777888888888777653   55677888888888887


Q ss_pred             CCc
Q 002105          433 SGR  435 (966)
Q Consensus       433 ~~~  435 (966)
                      .+.
T Consensus       358 ~~~  360 (597)
T 3oja_B          358 DCN  360 (597)
T ss_dssp             EHH
T ss_pred             CCh
Confidence            754

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=8.1e-35  Score=325.78  Aligned_cols=254  Identities=20%  Similarity=0.292  Sum_probs=190.8

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhh-cCCCceeEEeeEEecCC----eeEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL-IMHPNIVRLHGVCRSEK----AAYLVY  760 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~-~~H~niv~l~g~~~~~~----~~~lv~  760 (966)
                      .....+|+|++|.||+++.  ++..||||++...   ..+.+..|++.+... ++|||||++++++..++    ..++||
T Consensus        45 ~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~  119 (342)
T 1b6c_B           45 VLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS  119 (342)
T ss_dssp             EEEEEEEEETTEEEEEEEE--TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEEE
T ss_pred             EEEeeecCCCCcEEEEEEE--cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEEE
Confidence            4445678899999999986  5889999998533   234566676665543 68999999999998876    789999


Q ss_pred             EccCCCCHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcC-----CCCeEeecCCCCcEEEcCCCCceEEEeccccceec
Q 002105          761 EYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFHC-----SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT  833 (966)
Q Consensus       761 Ey~~~g~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~-----~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~  833 (966)
                      ||+++|+|.++++.  ++|..+..++.|++.||+|||...     ..+|+||||||+||+++.+.  .++++|||.+...
T Consensus       120 e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~--~~kL~Dfg~~~~~  197 (342)
T 1b6c_B          120 DYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNG--TCCIADLGLAVRH  197 (342)
T ss_dssp             CCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTS--CEEECCCTTCEEE
T ss_pred             eecCCCcHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCC--CEEEEECCCceec
Confidence            99999999999974  899999999999999999999421     45899999999999998765  5789999987542


Q ss_pred             C----------CCCcCCcccccccccCCC------CCCCcchHHHHHHHHHHHHcC----------CCCCCCCCCchhhH
Q 002105          834 D----------SKSINSSAYVAPETKESK------DITEKGDIYGFGLILIDLLTG----------KSPADADFGVHESI  887 (966)
Q Consensus       834 ~----------~~~~~~~~y~aPE~~~~~------~~~~~~Dv~S~Gv~l~el~tg----------~~p~~~~~~~~~~~  887 (966)
                      .          ....||+.|+|||++.+.      .++.++|||||||++|||+||          +.||..........
T Consensus       198 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~  277 (342)
T 1b6c_B          198 DSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSV  277 (342)
T ss_dssp             ETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCH
T ss_pred             cccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccH
Confidence            1          234689999999998765      334689999999999999999          67776543222222


Q ss_pred             HHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          888 VEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       888 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      .++........     ..|.+..... ..+....+.+++.+||+.||++|||+.||++.|+++.+
T Consensus       278 ~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~  336 (342)
T 1b6c_B          278 EEMRKVVCEQK-----LRPNIPNRWQ-SCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ  336 (342)
T ss_dssp             HHHHHHHTTSC-----CCCCCCGGGG-TSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-----hCCCCccccc-chhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHH
Confidence            22222221111     1121111111 12445578889999999999999999999999999544

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=3.7e-35  Score=340.68  Aligned_cols=238  Identities=22%  Similarity=0.273  Sum_probs=182.2

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEecc---CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV---NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~---~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      +.....+|+|+||.||+|+...+|..||||++...   .......+.+|+..+.+ ++|||||+++++|..++..|+|||
T Consensus       150 y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~l~~~~~~~~~~~lv~e  228 (446)
T 4ejn_A          150 FEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQN-SRHPFLTALKYSFQTHDRLCFVME  228 (446)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCC-CSCTTSCCEEEEEEETTEEEEEEC
T ss_pred             cEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHh-CCCCeEeeEEEEEeeCCEEEEEEe
Confidence            34556689999999999999899999999998643   22233456677766666 799999999999999999999999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-----
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-----  833 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-----  833 (966)
                      ||++|+|.+++.   .+++..+..++.||+.||+|||..  .+||||||||+|||++.+.  .++++|||++...     
T Consensus       229 ~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~--~giiHrDlkp~NIll~~~~--~~kl~DFG~a~~~~~~~~  304 (446)
T 4ejn_A          229 YANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDG--HIKITDFGLCKEGIKDGA  304 (446)
T ss_dssp             CCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH--TCCCCCCCCGGGEEECSSS--CEEECCCCCCCTTCC---
T ss_pred             eCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhc--CCEEECCCCHHHEEECCCC--CEEEccCCCceeccCCCc
Confidence            999999999986   389999999999999999999941  5899999999999999754  5789999987541     


Q ss_pred             -CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          834 -DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       834 -~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                       .....||+.|+|||++.+..++.++|||||||++|||+||+.||....  .....+.+..  ...        .+....
T Consensus       305 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~--~~~~~~~i~~--~~~--------~~p~~~  372 (446)
T 4ejn_A          305 TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD--HEKLFELILM--EEI--------RFPRTL  372 (446)
T ss_dssp             --CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHH--CCC--------CCCTTS
T ss_pred             ccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCC--HHHHHHHHHh--CCC--------CCCccC
Confidence             234578999999999999999999999999999999999999997532  2212121111  010        011112


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARP-----CASDVTK  945 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RP-----t~~~v~~  945 (966)
                      +      .++.+++.+|++.||++||     +++|+++
T Consensus       373 ~------~~~~~li~~~L~~dP~~R~~~~~~t~~ell~  404 (446)
T 4ejn_A          373 G------PEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ  404 (446)
T ss_dssp             C------HHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             C------HHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence            2      2466788899999999999     9998874

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=6.1e-35  Score=316.51  Aligned_cols=239  Identities=19%  Similarity=0.219  Sum_probs=187.4

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|+|++|.||+|+...++..||+|++........+.+.+|+..+.+ ++|||||++++++.+++..++||||+++|+
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   92 (277)
T 3f3z_A           14 ENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKS-LDHPNIIRLYETFEDNTDIYLVMELCTGGE   92 (277)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHT-CCCTTBCCEEEEEECSSEEEEEEECCCSCB
T ss_pred             eeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHh-CCCCCEeeEEEEEecCCeEEEEEeccCCCc
Confidence            3456889999999999988899999999976555555678888888877 699999999999999999999999999999


Q ss_pred             HHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcC-CCCceEEEeccccceecC-----CCCc
Q 002105          768 LSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDG-KDEPHLRLSVPGLAYCTD-----SKSI  838 (966)
Q Consensus       768 L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~-~~~~~~~~~~~~~~~~~~-----~~~~  838 (966)
                      |.+++.   .+++..+..++.|++.||+|||   +.+|+||||||+||++.. +....++++|||.+....     ....
T Consensus        93 L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~~~~~  169 (277)
T 3f3z_A           93 LFERVVHKRVFRESDAARIMKDVLSAVAYCH---KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKV  169 (277)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSCBCCCC
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccchhccC
Confidence            999885   3899999999999999999999   458999999999999932 134568899999886422     2346


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      +|+.|+|||.+.+. ++.++||||||+++|||+||+.||..... .+.......    . ...  ..+......      
T Consensus       170 ~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~-~~~~~~~~~----~-~~~--~~~~~~~~~------  234 (277)
T 3f3z_A          170 GTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTD-SEVMLKIRE----G-TFT--FPEKDWLNV------  234 (277)
T ss_dssp             SCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHH----C-CCC--CCHHHHTTS------
T ss_pred             CCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCH-HHHHHHHHh----C-CCC--CCchhhhcC------
Confidence            89999999998764 89999999999999999999999975321 111111111    0 000  000000011      


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ..++.+++.+|++.||++|||+.|+++
T Consensus       235 ~~~~~~li~~~l~~dp~~R~s~~~~l~  261 (277)
T 3f3z_A          235 SPQAESLIRRLLTKSPKQRITSLQALE  261 (277)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            135667888999999999999999974

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=5.8e-35  Score=317.74  Aligned_cols=236  Identities=20%  Similarity=0.338  Sum_probs=187.8

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEec-------------
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS-------------  752 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~-------------  752 (966)
                      .....+|+|++|.||+|+...++..||+|++...    .+.+.+|+..+.+ ++||||+++++++..             
T Consensus        14 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~~~~~~~~~   88 (284)
T 2a19_B           14 KEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYN----NEKAEREVKALAK-LDHVNIVHYNGCWDGFDYDPETSSKNSS   88 (284)
T ss_dssp             EEEEEEECSSSCCEEEEEETTTCCEEEEEEEECC----SGGGHHHHHHHHH-CCCTTBCCEEEEEEEEEEC---------
T ss_pred             ceeeeeccCCceEEEEEEEcCCCeEEEEEEeccc----cHHHHHHHHHHHh-CCCCCEEEEeeeEeccccCccccccccc
Confidence            3445578889999999999779999999998643    2467788888877 699999999999864             


Q ss_pred             ---CCeeEEEEEccCCCCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEE
Q 002105          753 ---EKAAYLVYEYIEGKELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRL  824 (966)
Q Consensus       753 ---~~~~~lv~Ey~~~g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~  824 (966)
                         .+..++||||+++|+|.++++     .+++..+..++.|++.||+|||.   .+|+||||||+||+++.+  ..+++
T Consensus        89 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~--~~~kl  163 (284)
T 2a19_B           89 RSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHS---KKLINRDLKPSNIFLVDT--KQVKI  163 (284)
T ss_dssp             CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEET--TEEEE
T ss_pred             ccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCCHHHEEEcCC--CCEEE
Confidence               445899999999999999995     38899999999999999999994   589999999999999865  46889


Q ss_pred             eccccceecC-----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCc
Q 002105          825 SVPGLAYCTD-----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCH  899 (966)
Q Consensus       825 ~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  899 (966)
                      +|||.+....     ....+|+.|+|||.+.+..++.++|||||||++|||+||..|+...    .   ++.... ... 
T Consensus       164 ~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~----~---~~~~~~-~~~-  234 (284)
T 2a19_B          164 GDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET----S---KFFTDL-RDG-  234 (284)
T ss_dssp             CCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH----H---HHHHHH-HTT-
T ss_pred             CcchhheeccccccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH----H---HHHHHh-hcc-
Confidence            9999876532     2346899999999999999999999999999999999999886321    1   111111 111 


Q ss_pred             ccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 002105          900 LDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS  954 (966)
Q Consensus       900 ~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~  954 (966)
                             .+...++   .   ++.+++.+|++.||++|||+.|+++.|+. ++..
T Consensus       235 -------~~~~~~~---~---~~~~li~~~l~~dp~~Rps~~e~l~~l~~-~~~~  275 (284)
T 2a19_B          235 -------IISDIFD---K---KEKTLLQKLLSKKPEDRPNTSEILRTLTV-WKKS  275 (284)
T ss_dssp             -------CCCTTSC---H---HHHHHHHHHTCSSGGGSCCHHHHHHHHHH-HTC-
T ss_pred             -------cccccCC---H---HHHHHHHHHccCChhhCcCHHHHHHHHHH-HhhC
Confidence                   1111122   2   45677889999999999999999999998 4443

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=3.4e-35  Score=327.63  Aligned_cols=246  Identities=18%  Similarity=0.236  Sum_probs=191.2

Q ss_pred             ccccccCCCCCccEEEEEEEecCCc-----EEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDM-----QFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL  758 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~-----~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~l  758 (966)
                      ......+|+|++|.||+|.....+.     .||+|++..... ...+.+.+|+..+.++-+|||||+++++|..++..++
T Consensus        48 ~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~l  127 (333)
T 2i1m_A           48 LQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLV  127 (333)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             ceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCceEE
Confidence            3445567899999999999865554     799998865432 2334577888888773389999999999999999999


Q ss_pred             EEEccCCCCHHHHHHc-----------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCce
Q 002105          759 VYEYIEGKELSEVLRN-----------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPH  821 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~~-----------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~  821 (966)
                      ||||+++|+|.++++.                 +++..+..++.|++.||+|||.   .+|+||||||+||+++.+  ..
T Consensus       128 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~~~--~~  202 (333)
T 2i1m_A          128 ITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLAS---KNCIHRDVAARNVLLTNG--HV  202 (333)
T ss_dssp             EEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGCEEEGG--GE
T ss_pred             EEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhc---CCcccCCcccceEEECCC--Ce
Confidence            9999999999999852                 5889999999999999999994   589999999999999854  46


Q ss_pred             EEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHH
Q 002105          822 LRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWAR  892 (966)
Q Consensus       822 ~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~  892 (966)
                      ++++|||.+....        ....+|+.|+|||++.+..++.++|||||||++|||+| |+.||...... ....+...
T Consensus       203 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~-~~~~~~~~  281 (333)
T 2i1m_A          203 AKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVN-SKFYKLVK  281 (333)
T ss_dssp             EEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSS-HHHHHHHH
T ss_pred             EEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchh-HHHHHHHh
Confidence            8899999886421        22345778999999988899999999999999999999 99998754322 22212222


Q ss_pred             HhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 002105          893 YCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCF  951 (966)
Q Consensus       893 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~  951 (966)
                      ....         +......+      .++.+++.+||+.||.+|||+.||++.|++..
T Consensus       282 ~~~~---------~~~~~~~~------~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~  325 (333)
T 2i1m_A          282 DGYQ---------MAQPAFAP------KNIYSIMQACWALEPTHRPTFQQICSFLQEQA  325 (333)
T ss_dssp             HTCC---------CCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             cCCC---------CCCCCCCC------HHHHHHHHHHhccChhhCcCHHHHHHHHHHHH
Confidence            1110         00111111      25667888999999999999999999999844

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.2e-34  Score=319.48  Aligned_cols=248  Identities=20%  Similarity=0.304  Sum_probs=185.6

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc---ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|++|.||+++...++..||+|++.......   .+.+.+|+..+.+ ++||||+++++++..++..|+||||
T Consensus        37 ~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-l~hp~iv~~~~~~~~~~~~~lv~e~  115 (309)
T 2h34_A           37 RLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGR-LQEPHVVPIHDFGEIDGQLYVDMRL  115 (309)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTT-CCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             EEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhh-cCCCCeeEEEEEEeeCCeEEEEEEe
Confidence            34455788999999999998889999999875432221   2456778877777 6999999999999999999999999


Q ss_pred             cCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          763 IEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       763 ~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      +++|+|.++++.   +++.++..++.|+++||+|||.   .+|+||||||+||+++.+.  .+++.|||.+....     
T Consensus       116 ~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~NIl~~~~~--~~kl~Dfg~~~~~~~~~~~  190 (309)
T 2h34_A          116 INGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHA---AGATHRDVKPENILVSADD--FAYLVDFGIASATTDEKLT  190 (309)
T ss_dssp             CCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTS--CEEECSCCC----------
T ss_pred             cCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---CcCCcCCCChHHEEEcCCC--CEEEecCccCccccccccc
Confidence            999999999963   8999999999999999999994   5899999999999998654  57899999875422     


Q ss_pred             --CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 --SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 --~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                        ....+++.|+|||++.+..++.++||||||+++|||+||+.||....  .........   ......    .......
T Consensus       191 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~--~~~~~~~~~---~~~~~~----~~~~~~~  261 (309)
T 2h34_A          191 QLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQ--LSVMGAHIN---QAIPRP----STVRPGI  261 (309)
T ss_dssp             ------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCH--HHHHHHHHH---SCCCCG----GGTSTTC
T ss_pred             cccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCch--HHHHHHHhc---cCCCCc----cccCCCC
Confidence              23468899999999999999999999999999999999999997531  111111111   110000    0111122


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCC-CHHHHHHHHHHhhccC
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARP-CASDVTKTLESCFRIS  954 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RP-t~~~v~~~L~~~~~~~  954 (966)
                      +      .++.+++.+||+.||++|| +++++++.|++.+...
T Consensus       262 ~------~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~  298 (309)
T 2h34_A          262 P------VAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATA  298 (309)
T ss_dssp             C------THHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC--
T ss_pred             C------HHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhh
Confidence            2      2466778899999999999 9999999999865544

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=331.84  Aligned_cols=257  Identities=20%  Similarity=0.254  Sum_probs=183.3

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHH-HhhcCCCceeEEeeEEec-----CCeeEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF-GKLIMHPNIVRLHGVCRS-----EKAAYLV  759 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~-~~~~~H~niv~l~g~~~~-----~~~~~lv  759 (966)
                      .....+|+|++|.||+|+.  ++..||||++....   ...+..|.+.. .+.++||||+++++++..     ....++|
T Consensus        16 ~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv   90 (336)
T 3g2f_A           16 KLLELIGRGRYGAVYKGSL--DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLV   90 (336)
T ss_dssp             EEEEEEEECSSEEEEEEEE--TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEE
T ss_pred             heeeecccCCCeEEEEEEE--CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEE
Confidence            4455678999999999975  78899999985432   22333333222 223799999999986542     2367899


Q ss_pred             EEccCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcC------CCCeEeecCCCCcEEEcCCCCceEEEeccccce
Q 002105          760 YEYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHC------SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY  831 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~------~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~  831 (966)
                      |||+++|+|.++++  ..+|..+.+++.||++||+|||..+      .++|+||||||+|||++.+.  .++++|||++.
T Consensus        91 ~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~--~~kL~DFG~a~  168 (336)
T 3g2f_A           91 MEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDG--TCVISDFGLSM  168 (336)
T ss_dssp             ECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTS--CEEECCCTTCE
T ss_pred             EecCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCC--cEEEeecccee
Confidence            99999999999996  4789999999999999999999432      22999999999999999654  57899999985


Q ss_pred             ecC--------------CCCcCCcccccccccCC-------CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchh---hH
Q 002105          832 CTD--------------SKSINSSAYVAPETKES-------KDITEKGDIYGFGLILIDLLTGKSPADADFGVHE---SI  887 (966)
Q Consensus       832 ~~~--------------~~~~~~~~y~aPE~~~~-------~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~---~~  887 (966)
                      ...              ....||+.|+|||++.+       ..++.++|||||||++|||+||+.|+.......+   ..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~  248 (336)
T 3g2f_A          169 RLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAF  248 (336)
T ss_dssp             ECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTT
T ss_pred             ecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhh
Confidence            422              13368999999999876       4567899999999999999999877543211100   00


Q ss_pred             ---------HHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          888 ---------VEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       888 ---------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                               .+..........    ..|.+............++.+++.+||+.||++|||++||+++|++++..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~  319 (336)
T 3g2f_A          249 QTEVGNHPTFEDMQVLVSREK----QRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMI  319 (336)
T ss_dssp             HHHHCSSCCHHHHHHHHTTSC----CCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             hcccCCCchHHHHHhhhcccc----cCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHH
Confidence                     000011111000    11222222222223445678889999999999999999999999996543

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=1e-34  Score=315.82  Aligned_cols=245  Identities=20%  Similarity=0.296  Sum_probs=190.5

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc------cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI------TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~------~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      ....+|+|++|.||+++...++..||+|.+......      ..+.+.+|+..+.+ ++||||+++++++..++..++||
T Consensus         9 ~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~   87 (283)
T 3bhy_A            9 MGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILRE-IRHPNIITLHDIFENKTDVVLIL   87 (283)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHH-CCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHh-CCCCCeeehhheecCCCeEEEEE
Confidence            345578899999999999888999999998654322      23457788887777 69999999999999999999999


Q ss_pred             EccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC--CceEEEeccccceecC-
Q 002105          761 EYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD--EPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       761 Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~--~~~~~~~~~~~~~~~~-  834 (966)
                      ||+++++|.+++.   .+++..+..++.|++.||+|||   ..+|+||||||+||+++.+.  ...++++|||.+.... 
T Consensus        88 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~  164 (283)
T 3bhy_A           88 ELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA  164 (283)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC-
T ss_pred             eecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChHHEEEecCCCCCCceEEEecccceeccC
Confidence            9999999999996   3899999999999999999999   45999999999999998654  3368999999886532 


Q ss_pred             ----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                          ....+++.|+|||++.+..++.++||||||+++|||+||+.||..... .+.. ....   . ... . .++....
T Consensus       165 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-~~~~-~~~~---~-~~~-~-~~~~~~~  236 (283)
T 3bhy_A          165 GNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETK-QETL-TNIS---A-VNY-D-FDEEYFS  236 (283)
T ss_dssp             -------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSH-HHHH-HHHH---T-TCC-C-CCHHHHT
T ss_pred             CCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcch-HHHH-HHhH---h-ccc-C-Ccchhcc
Confidence                234689999999999999999999999999999999999999875421 1111 1111   0 000 0 1111111


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK--TLES  949 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~--~L~~  949 (966)
                      ..+      .++.+++.+|++.||++|||+.|+++  .++.
T Consensus       237 ~~~------~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~  271 (283)
T 3bhy_A          237 NTS------ELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKA  271 (283)
T ss_dssp             TCC------HHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHH
T ss_pred             cCC------HHHHHHHHHHccCCHhHCcCHHHHHhCHHHHH
Confidence            111      24667888999999999999999986  4444

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=1.4e-34  Score=321.57  Aligned_cols=236  Identities=22%  Similarity=0.293  Sum_probs=178.9

Q ss_pred             ccccccCCCCCccEEEEEEEe---cCCcEEEEEEEeccC----cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeE
Q 002105          685 EENLTSRGKKGVSSSYKVRSL---ANDMQFVVKKIIDVN----TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAY  757 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~---~~~~~vavk~~~~~~----~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~  757 (966)
                      +.....+|+|++|.||+++..   .++..||+|++....    ......+.+|+..+.+ ++|||||++++++..++..|
T Consensus        19 y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~~~   97 (327)
T 3a62_A           19 FELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEE-VKHPFIVDLIYAFQTGGKLY   97 (327)
T ss_dssp             EEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHH-CCCTTBCCEEEEEECSSCEE
T ss_pred             eEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHh-CCCCCccceeEEEEcCCEEE
Confidence            345566799999999999975   578999999986532    1223456677777777 79999999999999999999


Q ss_pred             EEEEccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-
Q 002105          758 LVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-  833 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-  833 (966)
                      +||||+++|+|.++++.   +++.....++.||+.||+|||.   .+|+||||||+||+++.++  .++++|||++... 
T Consensus        98 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~Nill~~~~--~~kl~Dfg~~~~~~  172 (327)
T 3a62_A           98 LILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQ---KGIIYRDLKPENIMLNHQG--HVKLTDFGLCKESI  172 (327)
T ss_dssp             EEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCTTTEEECTTS--CEEECCCSCC----
T ss_pred             EEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh---CCEEcccCCHHHeEECCCC--cEEEEeCCcccccc
Confidence            99999999999999863   8899999999999999999994   5899999999999998654  5789999987532 


Q ss_pred             -----CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccc
Q 002105          834 -----DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI  908 (966)
Q Consensus       834 -----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  908 (966)
                           .....||+.|+|||++.+..++.++|||||||++|||++|+.||..... .+.. +.+.   .. ..      .+
T Consensus       173 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-~~~~-~~i~---~~-~~------~~  240 (327)
T 3a62_A          173 HDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENR-KKTI-DKIL---KC-KL------NL  240 (327)
T ss_dssp             ------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHH-HHHH---HT-CC------CC
T ss_pred             cCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCH-HHHH-HHHH---hC-CC------CC
Confidence                 2234689999999999999999999999999999999999999975421 1111 1111   11 00      01


Q ss_pred             cCCCcchHHHHHHHHHHHHHccCCCCCCCC-----CHHHHH
Q 002105          909 RGHVSSIQNEIVEIMNLALHCTAGDPTARP-----CASDVT  944 (966)
Q Consensus       909 ~~~~~~~~~~~~~~~~l~~~C~~~~P~~RP-----t~~~v~  944 (966)
                      ....+      .++.+++.+|++.||++||     ++.|++
T Consensus       241 p~~~~------~~~~~li~~~L~~dp~~R~~~~~~~~~e~l  275 (327)
T 3a62_A          241 PPYLT------QEARDLLKKLLKRNAASRLGAGPGDAGEVQ  275 (327)
T ss_dssp             CTTSC------HHHHHHHHHHSCSCGGGSTTSSTTTHHHHH
T ss_pred             CCCCC------HHHHHHHHHHHhcCHhhccCCCCCCHHHHH
Confidence            11121      2456778899999999999     556664

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=9.2e-35  Score=327.85  Aligned_cols=190  Identities=24%  Similarity=0.321  Sum_probs=161.8

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcC-----CCceeEEeeEEecCCeeEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM-----HPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~-----H~niv~l~g~~~~~~~~~lv  759 (966)
                      +.....+|+|++|.||+|+...++..||||++... ....+.+..|+..+.+ ++     |||||++++++...+..++|
T Consensus        37 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~-l~~~~~~h~~iv~~~~~~~~~~~~~lv  114 (360)
T 3llt_A           37 FLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKK-IQNDDINNNNIVKYHGKFMYYDHMCLI  114 (360)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHH-TCCCSTTGGGBCCEEEEEEETTEEEEE
T ss_pred             EEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHH-hcccCCCCCCeecccceeeECCeeEEE
Confidence            44556679999999999999889999999988532 2223445667766666 44     99999999999999999999


Q ss_pred             EEccCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC-----------------
Q 002105          760 YEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK-----------------  817 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~-----------------  817 (966)
                      |||+ +|+|.+++..     +++.....++.||+.||+|||   +.+|+||||||+|||++..                 
T Consensus       115 ~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~  190 (360)
T 3llt_A          115 FEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLR---KMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKK  190 (360)
T ss_dssp             ECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCE
T ss_pred             EcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCcccEEEccccccccccchhccccccc
Confidence            9999 8999999963     889999999999999999999   5589999999999999852                 


Q ss_pred             ------CCceEEEeccccceecC---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          818 ------DEPHLRLSVPGLAYCTD---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       818 ------~~~~~~~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                            ....++++|||.+....   ....||+.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus       191 ~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  262 (360)
T 3llt_A          191 IQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTH  262 (360)
T ss_dssp             EEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccccccCCCCEEEEeccCceecCCCCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCC
Confidence                  24568999999986532   3457899999999999999999999999999999999999999754

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=7.5e-35  Score=332.12  Aligned_cols=241  Identities=21%  Similarity=0.265  Sum_probs=184.8

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ......+|+|+||.||+++...+|+.||+|++....   ....+.+.+|...+.+ ++|||||++++++.+++..|+|||
T Consensus        63 f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~-~~hp~Iv~l~~~~~~~~~~~lVmE  141 (412)
T 2vd5_A           63 FEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVN-GDRRWITQLHFAFQDENYLYLVME  141 (412)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHH-SCTTTBCCEEEEEECSSEEEEEEC
T ss_pred             EEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHh-cCCCCeeeEEEEEeeCCEEEEEEc
Confidence            455667899999999999998899999999986432   2233456777777766 799999999999999999999999


Q ss_pred             ccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---
Q 002105          762 YIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       762 y~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---  834 (966)
                      ||+||+|.++++    .+++..+..++.||+.||+|||   +.+||||||||+|||+|.++  +++++|||++....   
T Consensus       142 ~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILld~~g--~vkL~DFGla~~~~~~~  216 (412)
T 2vd5_A          142 YYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKPDNILLDRCG--HIRLADFGSCLKLRADG  216 (412)
T ss_dssp             CCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTS--CEEECCCTTCEECCTTS
T ss_pred             CCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccCHHHeeecCCC--CEEEeechhheeccCCC
Confidence            999999999995    4899999999999999999999   45899999999999999654  68999999986432   


Q ss_pred             ----CCCcCCcccccccccC-------CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccc
Q 002105          835 ----SKSINSSAYVAPETKE-------SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTW  903 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~-------~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  903 (966)
                          ...+||+.|||||++.       ...|+.++|||||||++|||+||+.||.+... .+........ ....     
T Consensus       217 ~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~-~~~~~~i~~~-~~~~-----  289 (412)
T 2vd5_A          217 TVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADST-AETYGKIVHY-KEHL-----  289 (412)
T ss_dssp             CEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSH-HHHHHHHHTH-HHHC-----
T ss_pred             ccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCH-HHHHHHHHhc-ccCc-----
Confidence                2347999999999886       46789999999999999999999999976421 1111111100 0000     


Q ss_pred             ccccccCCCcchHHHHHHHHHHHHHccCCCCCCC---CCHHHHHH
Q 002105          904 VDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR---PCASDVTK  945 (966)
Q Consensus       904 ~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~R---Pt~~~v~~  945 (966)
                      .-|......+      .++.+++.+|++ +|++|   |+++||.+
T Consensus       290 ~~p~~~~~~s------~~~~dli~~lL~-~p~~Rlgr~~~~ei~~  327 (412)
T 2vd5_A          290 SLPLVDEGVP------EEARDFIQRLLC-PPETRLGRGGAGDFRT  327 (412)
T ss_dssp             CCC----CCC------HHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred             CCCccccCCC------HHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence            0111111222      245667789998 99998   58888753

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=1.2e-34  Score=314.44  Aligned_cols=237  Identities=21%  Similarity=0.332  Sum_probs=185.7

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|++|.||+|+...++..||+|++....   ......+.+|+..+.+ ++||||+++++++.+++..++||||
T Consensus        12 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~   90 (279)
T 3fdn_A           12 EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSH-LRHPNILRLYGYFHDATRVYLILEY   90 (279)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTT-CCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             EEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHc-CCCCCCcchhheEecCCEEEEEEec
Confidence            33455789999999999998889999999986432   1123446677777766 7999999999999999999999999


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----C
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----S  835 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----~  835 (966)
                      +++|+|.+++.   .+++..+..++.|++.||+|||   ..+|+||||||+||+++.+.  .+++.|||.+....    .
T Consensus        91 ~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~--~~~l~Dfg~~~~~~~~~~~  165 (279)
T 3fdn_A           91 APLGTVYRELQKLSKFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAG--ELKIADFGWSVHAPSSRRT  165 (279)
T ss_dssp             CTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTS--CEEECSCCEESCC------
T ss_pred             CCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCC--CEEEEeccccccCCccccc
Confidence            99999999986   4899999999999999999999   56999999999999998654  57899999875422    2


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...|++.|+|||.+.+..++.++||||||+++|||++|+.||....  ..........          .........+  
T Consensus       166 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~----------~~~~~~~~~~--  231 (279)
T 3fdn_A          166 DLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANT--YQETYKRISR----------VEFTFPDFVT--  231 (279)
T ss_dssp             --CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSS--HHHHHHHHHH----------TCCCCCTTSC--
T ss_pred             ccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCc--HHHHHHHHHh----------CCCCCCCcCC--
Confidence            3468999999999999999999999999999999999999997532  1111111110          0111111121  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                          .++.+++.+|++.||++|||++||++.
T Consensus       232 ----~~~~~li~~~l~~~p~~Rps~~e~l~h  258 (279)
T 3fdn_A          232 ----EGARDLISRLLKHNPSQRPMLREVLEH  258 (279)
T ss_dssp             ----HHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred             ----HHHHHHHHHHhccChhhCCCHHHHhhC
Confidence                245677889999999999999999853

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=7.5e-35  Score=313.88  Aligned_cols=239  Identities=20%  Similarity=0.338  Sum_probs=190.0

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|+|++|.||+++. .++..||+|++.... ...+++.+|+..+.+ ++||||+++++++.+++..++||||+++|
T Consensus        12 ~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   88 (267)
T 3t9t_A           12 FVQEIGSGQFGLVHLGYW-LNKDKVAIKTIREGA-MSEEDFIEEAEVMMK-LSHPKLVQLYGVCLEQAPICLVTEFMEHG   88 (267)
T ss_dssp             EEEEEEEETTEEEEEEEE-TTTEEEEEEEECTTT-BCHHHHHHHHHHHHT-CCCTTBCCEEEEECSSSSCEEEECCCTTC
T ss_pred             eeeEecCCCceeEEEEEe-cCCCeEEEEEccccC-CCHHHHHHHHHHHHh-CCCCCEeeEEEEEccCCCeEEEEeCCCCC
Confidence            345578899999999998 578889999886543 234567888888877 69999999999999999999999999999


Q ss_pred             CHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-------CC
Q 002105          767 ELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-------DS  835 (966)
Q Consensus       767 ~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-------~~  835 (966)
                      +|.++++.    +++..+..++.|+++||+|||   +.+|+||||||+||+++.+  ..++++|||.+...       ..
T Consensus        89 ~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nili~~~--~~~kl~dfg~~~~~~~~~~~~~~  163 (267)
T 3t9t_A           89 CLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGEN--QVIKVSDFGMTRFVLDDQYTSST  163 (267)
T ss_dssp             BHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECGG--GCEEECCTTGGGGBCCHHHHSTT
T ss_pred             cHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEECCC--CCEEEcccccccccccccccccc
Confidence            99999963    789999999999999999999   4589999999999999865  45789999987542       12


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ...+++.|+|||...+..++.++||||||+++|||+| |+.||....  .....+...   ....      +......+ 
T Consensus       164 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~--~~~~~~~i~---~~~~------~~~~~~~~-  231 (267)
T 3t9t_A          164 GTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS--NSEVVEDIS---TGFR------LYKPRLAS-  231 (267)
T ss_dssp             STTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--HHHHHHHHH---TTCC------CCCCTTSC-
T ss_pred             cccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCC--HHHHHHHHh---cCCc------CCCCccCc-
Confidence            3456778999999988889999999999999999999 899987532  111112111   1100      11111111 


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESC  950 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~  950 (966)
                           .++.+++.+|++.||++|||++|+++.|+++
T Consensus       232 -----~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l  262 (267)
T 3t9t_A          232 -----THVYQIMNHCWRERPEDRPAFSRLLRQLAEI  262 (267)
T ss_dssp             -----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence                 2466788899999999999999999999984

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-34  Score=323.12  Aligned_cols=245  Identities=21%  Similarity=0.322  Sum_probs=186.7

Q ss_pred             cccCCCCCccEEEEEEEecCC----cEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          688 LTSRGKKGVSSSYKVRSLAND----MQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~----~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      ...+|+|++|.||+|+...++    ..||||++..... .....+.+|+..+.+ ++|||||++++++...+..++||||
T Consensus        49 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~  127 (333)
T 1mqb_A           49 QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQ-FSHHNIIRLEGVISKYKPMMIITEY  127 (333)
T ss_dssp             EEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHT-CCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             ccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHh-CCCCCCCcEEEEEecCCCcEEEEeC
Confidence            345789999999999876543    3599998864322 223457788888777 6999999999999999999999999


Q ss_pred             cCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC---
Q 002105          763 IEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS---  835 (966)
Q Consensus       763 ~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~---  835 (966)
                      +++|+|.++++    .+++.++..++.|+++||+|||.   .+|+||||||+||+++.+.  .++++|||.+.....   
T Consensus       128 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~--~~kl~Dfg~~~~~~~~~~  202 (333)
T 1mqb_A          128 MENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNL--VCKVSDFGLSRVLEDDPE  202 (333)
T ss_dssp             CTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTC--CEEECCCCC---------
T ss_pred             CCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChheEEECCCC--cEEECCCCcchhhccccc
Confidence            99999999996    38999999999999999999994   5899999999999998654  578999998754221   


Q ss_pred             ------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccc
Q 002105          836 ------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI  908 (966)
Q Consensus       836 ------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  908 (966)
                            ...+|+.|+|||.+.+..++.++|||||||++|||+| |+.||....  ...+.+.+.   .....      ..
T Consensus       203 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~--~~~~~~~~~---~~~~~------~~  271 (333)
T 1mqb_A          203 ATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELS--NHEVMKAIN---DGFRL------PT  271 (333)
T ss_dssp             --------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--HHHHHHHHH---TTCCC------CC
T ss_pred             cccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCC--HHHHHHHHH---CCCcC------CC
Confidence                  1235678999999998999999999999999999999 999986431  111112111   11110      01


Q ss_pred             cCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 002105          909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISS  955 (966)
Q Consensus       909 ~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~~  955 (966)
                      ....+      .++.+++.+||+.||++||++.||++.|+++++..+
T Consensus       272 ~~~~~------~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~  312 (333)
T 1mqb_A          272 PMDCP------SAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPD  312 (333)
T ss_dssp             CTTCB------HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGG
T ss_pred             cccCC------HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcch
Confidence            11111      256678889999999999999999999998666543

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=4e-35  Score=318.12  Aligned_cols=235  Identities=20%  Similarity=0.300  Sum_probs=167.3

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ....+|+|++|.||+|+...+|..||||.+.....   ...+.+.+|+..+.+ ++||||+++++++.+++..++||||+
T Consensus        15 ~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~   93 (278)
T 3cok_A           15 VGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQ-LKHPSILELYNYFEDSNYVYLVLEMC   93 (278)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTT-BCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             eeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHh-CCCCCeEeEEEEEccCCeEEEEEecC
Confidence            34456889999999999988999999999864321   122456777777766 79999999999999999999999999


Q ss_pred             CCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          764 EGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       764 ~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      ++|+|.++++.    +++..+..++.|+++||+|||.   .+|+||||||+||+++.+.  .++++|||.+....     
T Consensus        94 ~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nili~~~~--~~kl~dfg~~~~~~~~~~~  168 (278)
T 3cok_A           94 HNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHS---HGILHRDLTLSNLLLTRNM--NIKIADFGLATQLKMPHEK  168 (278)
T ss_dssp             TTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSSCCGGGEEECTTC--CEEECCCTTCEECC-----
T ss_pred             CCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCC--CEEEEeecceeeccCCCCc
Confidence            99999999963    7999999999999999999994   5899999999999998654  57899999876532     


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                       ....||+.|+|||.+.+..++.++|||||||++|||+||+.||...... +..    ...    ..   .+.......+
T Consensus       169 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-~~~----~~~----~~---~~~~~~~~~~  236 (278)
T 3cok_A          169 HYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVK-NTL----NKV----VL---ADYEMPSFLS  236 (278)
T ss_dssp             -----------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC----------C----CS---SCCCCCTTSC
T ss_pred             ceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHH-HHH----HHH----hh---cccCCccccC
Confidence             1346789999999999989999999999999999999999998754211 111    000    00   0111111122


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                            .++.+++.+|++.||++|||++||++
T Consensus       237 ------~~~~~li~~~l~~dp~~Rps~~~~l~  262 (278)
T 3cok_A          237 ------IEAKDLIHQLLRRNPADRLSLSSVLD  262 (278)
T ss_dssp             ------HHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             ------HHHHHHHHHHcccCHhhCCCHHHHhc
Confidence                  25667888999999999999999875

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=7.2e-35  Score=350.07  Aligned_cols=240  Identities=18%  Similarity=0.285  Sum_probs=187.5

Q ss_pred             cCCCCCccEEEEEEEec--CCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          690 SRGKKGVSSSYKVRSLA--NDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~--~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      .+|+|+||.||+|....  ++..||||++.... ....++|.+|+..+.+ ++|||||+++|+|.. +..++|||||++|
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~-l~hpniv~l~~~~~~-~~~~lv~E~~~~g  420 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQ-LDNPYIVRLIGVCQA-EALMLVMEMAGGG  420 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTT-CCCTTBCCEEEEEES-SSEEEEEECCTTC
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHh-CCCCCEeeEEEEecc-CCeEEEEEeCCCC
Confidence            46999999999998753  45679999886542 2234568888888877 699999999999986 5689999999999


Q ss_pred             CHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--------
Q 002105          767 ELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--------  834 (966)
Q Consensus       767 ~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--------  834 (966)
                      +|.++++    .+++..+..++.||++||+|||   +.+||||||||+|||++.+  ..++++|||++....        
T Consensus       421 ~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlkp~NILl~~~--~~vkL~DFGla~~~~~~~~~~~~  495 (613)
T 2ozo_A          421 PLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLAARNVLLVNR--HYAKISDFGLSKALGADDSYYTA  495 (613)
T ss_dssp             BHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEET--TEEEECCCSTTTTCC--------
T ss_pred             cHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCCHHHEEEcCC--CcEEEeeccCcccccCCCceeee
Confidence            9999995    3899999999999999999999   4589999999999999865  468999999985421        


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                       ....+++.|+|||++.+..++.++|||||||++|||+| |+.||..... . .+.+.+..   +...      .....+
T Consensus       496 ~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~-~-~~~~~i~~---~~~~------~~p~~~  564 (613)
T 2ozo_A          496 RSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG-P-EVMAFIEQ---GKRM------ECPPEC  564 (613)
T ss_dssp             ------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCS-H-HHHHHHHT---TCCC------CCCTTC
T ss_pred             ccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCH-H-HHHHHHHc---CCCC------CCCCcC
Confidence             11234578999999998999999999999999999998 9999975422 2 22222221   1111      011112


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      +      .++.+++..||+.||++||+|.+|+++|+.++..
T Consensus       565 ~------~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~  599 (613)
T 2ozo_A          565 P------PELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS  599 (613)
T ss_dssp             C------HHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             C------HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence            2      3567788999999999999999999999986554

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=4.7e-35  Score=336.45  Aligned_cols=242  Identities=16%  Similarity=0.222  Sum_probs=181.1

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--------cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--------TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAY  757 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--------~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~  757 (966)
                      .....+|+|+||.||+|....++..||||++....        ......+.+|+..+.+ ++|||||++++++.. +..|
T Consensus       138 ~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~hpniv~l~~~~~~-~~~~  215 (419)
T 3i6u_A          138 IMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKK-LNHPCIIKIKNFFDA-EDYY  215 (419)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHH-CCCTTBCCCCEEEES-SEEE
T ss_pred             EEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHh-CCCCCEeeEEEEEec-CceE
Confidence            34456799999999999998999999999986532        1123357888888888 699999999999865 5579


Q ss_pred             EEEEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC-CceEEEeccccceec
Q 002105          758 LVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAYCT  833 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~-~~~~~~~~~~~~~~~  833 (966)
                      +|||||++|+|.+++.   .+++.....++.|++.||+|||.   .+|+||||||+|||++.+. ...++++|||++...
T Consensus       216 lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~  292 (419)
T 3i6u_A          216 IVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL  292 (419)
T ss_dssp             EEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSC
T ss_pred             EEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEecCCCcceEEEeecccceec
Confidence            9999999999999885   48999999999999999999994   5899999999999997543 346899999998643


Q ss_pred             C-----CCCcCCcccccccccC---CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccc
Q 002105          834 D-----SKSINSSAYVAPETKE---SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVD  905 (966)
Q Consensus       834 ~-----~~~~~~~~y~aPE~~~---~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  905 (966)
                      .     ....||+.|+|||++.   ...++.++|||||||++|||+||+.||.......... +....    ....  ..
T Consensus       293 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~-~~i~~----~~~~--~~  365 (419)
T 3i6u_A          293 GETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLK-DQITS----GKYN--FI  365 (419)
T ss_dssp             C-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHH-HHHHT----TCCC--CC
T ss_pred             CCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHH-HHHhc----CCCC--CC
Confidence            2     2346899999999975   3678889999999999999999999997543222211 21111    1100  01


Q ss_pred             ccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       906 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      |......      ..++.+++.+|++.||++|||++|+++
T Consensus       366 ~~~~~~~------~~~~~~li~~~L~~dP~~Rps~~e~l~  399 (419)
T 3i6u_A          366 PEVWAEV------SEKALDLVKKLLVVDPKARFTTEEALR  399 (419)
T ss_dssp             HHHHTTS------CHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             chhhccc------CHHHHHHHHHHccCChhHCcCHHHHhC
Confidence            1111111      135667888999999999999999875

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=7.8e-35  Score=341.97  Aligned_cols=237  Identities=21%  Similarity=0.263  Sum_probs=188.2

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|+||.||+|+...+|..||+|++....   ......+.+|+..+.+ ++|||||++++++.+++..|+||||
T Consensus       187 ~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~-l~hp~Iv~l~~~~~~~~~l~lVmEy  265 (576)
T 2acx_A          187 RQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEK-VNSRFVVSLAYAYETKDALCLVLTL  265 (576)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHH-CCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             EEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHH-cCCCCEeeEEEEEeeCCEEEEEEEc
Confidence            34456799999999999998899999999986532   2223346778777777 7999999999999999999999999


Q ss_pred             cCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---
Q 002105          763 IEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       763 ~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---  834 (966)
                      |+||+|.+++..     +++..+..++.||+.||+|||.   .+||||||||+|||++.++  +++++|||++....   
T Consensus       266 ~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~---~gIvHrDLKPeNILld~~g--~vKL~DFGla~~~~~~~  340 (576)
T 2acx_A          266 MNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHR---ERIVYRDLKPENILLDDHG--HIRISDLGLAVHVPEGQ  340 (576)
T ss_dssp             CCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTS--CEEECCCTTCEECCTTC
T ss_pred             CCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCchheEEEeCCC--CeEEEecccceecccCc
Confidence            999999999963     8899999999999999999994   5899999999999999654  68999999986532   


Q ss_pred             --CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc--hhhHHHHHHHhhccCcccccccccccC
Q 002105          835 --SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV--HESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       835 --~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                        ...+||+.|+|||++.+..|+.++|||||||++|||+||+.||......  ...+.+.+..   .       .+....
T Consensus       341 ~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~---~-------~~~~p~  410 (576)
T 2acx_A          341 TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKE---V-------PEEYSE  410 (576)
T ss_dssp             CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHH---C-------CCCCCT
T ss_pred             cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhc---c-------cccCCc
Confidence              2347899999999999999999999999999999999999999764321  1222121111   0       011111


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCC-----CHHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARP-----CASDVT  944 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RP-----t~~~v~  944 (966)
                      ..+      .++.+++.+|++.||++||     +++||+
T Consensus       411 ~~s------~~~~dLI~~lL~~dP~~R~g~~~~sa~eil  443 (576)
T 2acx_A          411 RFS------PQARSLCSQLLCKDPAERLGCRGGSAREVK  443 (576)
T ss_dssp             TSC------HHHHHHHHHHTCSSGGGSTTCSSSHHHHHH
T ss_pred             cCC------HHHHHHHHHhccCCHHHcCCCCCCCHHHHH
Confidence            222      2466778899999999999     667775

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=8.7e-35  Score=317.25  Aligned_cols=246  Identities=20%  Similarity=0.307  Sum_probs=182.5

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ....+|+|++|.||+|+. .+|..||||++.....  ...+.+.+|+..+.+ ++|||||++++++..++..++||||++
T Consensus         6 ~~~~lg~G~~g~V~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~   83 (288)
T 1ob3_A            6 GLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKE-LKHSNIVKLYDVIHTKKRLVLVFEHLD   83 (288)
T ss_dssp             EEEEEEEETTEEEEEEEE-TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGG-CCCTTBCCEEEEEECSSCEEEEEECCS
T ss_pred             hhhhcccCCCEEEEEEEc-CCCCEEEEEEEeccccccccchhHHHHHHHHHh-cCCCCEeeeeeEEccCCeEEEEEEecC
Confidence            445678999999999998 7899999999864322  223456778877777 799999999999999999999999999


Q ss_pred             CCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          765 GKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       765 ~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      + +|.+++.    .+++.....++.|+++||+|||   +.+|+||||||+||+++.+.  .++++|||.+....      
T Consensus        84 ~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~--~~kl~Dfg~~~~~~~~~~~~  157 (288)
T 1ob3_A           84 Q-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREG--ELKIADFGLARAFGIPVRKY  157 (288)
T ss_dssp             E-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTS--CEEECCTTHHHHHCC-----
T ss_pred             C-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCC--CEEEeECccccccCcccccc
Confidence            5 9999886    3789999999999999999999   45999999999999998654  57899999875421      


Q ss_pred             CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccc--------cc
Q 002105          835 SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTW--------VD  905 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~d  905 (966)
                      ....+|+.|+|||++.+ ..++.++||||+||++|||+||+.||.+... .+......+. ........|        .+
T Consensus       158 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  235 (288)
T 1ob3_A          158 THEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSE-ADQLMRIFRI-LGTPNSKNWPNVTELPKYD  235 (288)
T ss_dssp             ----CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHH-HCCCCTTTSTTGGGSTTCC
T ss_pred             ccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHH-HCCCChhhchhhhcccccc
Confidence            23467999999999876 4589999999999999999999999975421 2222121111 110000000        11


Q ss_pred             ccccC--------CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          906 PFIRG--------HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       906 ~~~~~--------~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +....        .....   ..++.+++.+|++.||++|||++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~---~~~~~~li~~~L~~dP~~Rpt~~e~l~  280 (288)
T 1ob3_A          236 PNFTVYEPLPWESFLKGL---DESGIDLLSKMLKLDPNQRITAKQALE  280 (288)
T ss_dssp             TTCCCCCCCCGGGTCCSC---CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cccccccCccHHHHhhhc---CHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            11100        00011   134567888999999999999999875

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=2e-35  Score=326.02  Aligned_cols=244  Identities=21%  Similarity=0.348  Sum_probs=180.8

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc---ccchHHHHHHHHhhcCCCceeEEeeEEecCC----eeEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK----AAYL  758 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~----~~~l  758 (966)
                      .....+|+|++|.||+|++..++..||||++.......   ...+.+|+..+.+ ++|||||++++++...+    ..|+
T Consensus        15 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~~~~~~~l   93 (311)
T 3ork_A           15 ELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAA-LNHPAIVAVYDTGEAETPAGPLPYI   93 (311)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCC-CCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHc-CCCCCcceEEEeeeccCCCCcccEE
Confidence            34456789999999999998999999999986542222   2346677766666 69999999999987654    3499


Q ss_pred             EEEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-
Q 002105          759 VYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-  834 (966)
                      ||||+++|+|.++++   .+++.+...++.|++.||+|||   ..+|+||||||+||+++.+.  .++++|||.+.... 
T Consensus        94 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~--~~kl~Dfg~a~~~~~  168 (311)
T 3ork_A           94 VMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATN--AVKVMDFGIARAIAD  168 (311)
T ss_dssp             EEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTS--CEEECCCSCC-----
T ss_pred             EEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEcCCC--CEEEeeccCcccccc
Confidence            999999999999996   3899999999999999999999   45899999999999998654  47899999875321 


Q ss_pred             --------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccc
Q 002105          835 --------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDP  906 (966)
Q Consensus       835 --------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  906 (966)
                              ....||+.|+|||++.+..++.++|||||||++|||+||+.||..... .+.......    ....   ..+
T Consensus       169 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~-~~~~~~~~~----~~~~---~~~  240 (311)
T 3ork_A          169 SGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSP-VSVAYQHVR----EDPI---PPS  240 (311)
T ss_dssp             -------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHH----CCCC---CHH
T ss_pred             cccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCh-HHHHHHHhc----CCCC---Ccc
Confidence                    123589999999999999999999999999999999999999975421 111111111    1100   000


Q ss_pred             cccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHH-HHHHHHH
Q 002105          907 FIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASD-VTKTLES  949 (966)
Q Consensus       907 ~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~-v~~~L~~  949 (966)
                      ......+      .++.+++.+|++.||++||++.+ +...+.+
T Consensus       241 ~~~~~~~------~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~  278 (311)
T 3ork_A          241 ARHEGLS------ADLDAVVLKALAKNPENRYQTAAEMRADLVR  278 (311)
T ss_dssp             HHSTTCC------HHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred             cccCCCC------HHHHHHHHHHHhcCHhhChhhHHHHHHHHHH
Confidence            0011111      24667888999999999997655 4455655

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=3.8e-35  Score=340.40  Aligned_cols=235  Identities=21%  Similarity=0.286  Sum_probs=186.9

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ....+|+|++|.||+|++..+|..||||++.....   .....+.+|+..+.+ ++|||||++++++..++..|+||||+
T Consensus        20 l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~-l~HpnIv~l~~~~~~~~~~~lv~E~~   98 (476)
T 2y94_A           20 LGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKL-FRHPHIIKLYQVISTPSDIFMVMEYV   98 (476)
T ss_dssp             EEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTT-CCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHh-CCCCCCCcEEEEEEECCEEEEEEeCC
Confidence            34457899999999999988999999999864321   122356777777766 79999999999999999999999999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----C
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----S  835 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----~  835 (966)
                      ++|+|.+++.   .+++.....++.||+.||+|||   +.+|+||||||+||+++.+.  .++++|||++....     .
T Consensus        99 ~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDLkp~NIll~~~~--~vkL~DFG~a~~~~~~~~~~  173 (476)
T 2y94_A           99 SGGELFDYICKNGRLDEKESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHM--NAKIADFGLSNMMSDGEFLR  173 (476)
T ss_dssp             SSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEECTTC--CEEECCCSSCEECCTTCCBC
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcccccHHHEEEecCC--CeEEEeccchhhcccccccc
Confidence            9999999996   4899999999999999999999   56999999999999999654  57899999986532     2


Q ss_pred             CCcCCcccccccccCCCCC-CCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          836 KSINSSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~-~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ..+||+.|+|||++.+..+ +.++||||+||++|||+||+.||+.... .... +.+   ... ..   .   .....+ 
T Consensus       174 ~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~-~~~~-~~i---~~~-~~---~---~p~~~s-  240 (476)
T 2y94_A          174 TSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHV-PTLF-KKI---CDG-IF---Y---TPQYLN-  240 (476)
T ss_dssp             CCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSS-HHHH-HHH---HTT-CC---C---CCTTCC-
T ss_pred             ccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCH-HHHH-HHH---hcC-Cc---C---CCccCC-
Confidence            3478999999999988776 6799999999999999999999975421 1111 111   111 10   0   011111 


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                           .++.+++.+|++.||++|||++||++
T Consensus       241 -----~~~~~Li~~~L~~dP~~Rpt~~eil~  266 (476)
T 2y94_A          241 -----PSVISLLKHMLQVDPMKRATIKDIRE  266 (476)
T ss_dssp             -----HHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             -----HHHHHHHHHHcCCCchhCcCHHHHHh
Confidence                 24667888999999999999999985

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=2.5e-34  Score=316.16  Aligned_cols=241  Identities=21%  Similarity=0.303  Sum_probs=186.6

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|+|++|.||+++...+|+.||+|++........+.+.+|+..+.+ ++||||+++++++.+++..++||||+++|
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   91 (304)
T 2jam_A           13 FMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKK-IKHENIVTLEDIYESTTHYYLVMQLVSGG   91 (304)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHH-CCCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             eeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHh-CCCCCeeehhhhcccCCEEEEEEEcCCCc
Confidence            34557889999999999988999999999876544445567888888877 69999999999999999999999999999


Q ss_pred             CHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcC-CCCceEEEeccccceecCCC----Cc
Q 002105          767 ELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDG-KDEPHLRLSVPGLAYCTDSK----SI  838 (966)
Q Consensus       767 ~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~-~~~~~~~~~~~~~~~~~~~~----~~  838 (966)
                      +|.+++.   .+++.....++.|++.||+|||.   .+|+||||||+||++.. +....++++|||.+......    ..
T Consensus        92 ~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~  168 (304)
T 2jam_A           92 ELFDRILERGVYTEKDASLVIQQVLSAVKYLHE---NGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTAC  168 (304)
T ss_dssp             BHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBTTHHHH
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCcccccc
Confidence            9999885   38999999999999999999994   58999999999999932 23456899999987643322    24


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE  918 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  918 (966)
                      ||+.|+|||.+.+..++.++|||||||++|||+||+.||....  .....+....   . .. .+..+ .....+     
T Consensus       169 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~--~~~~~~~i~~---~-~~-~~~~~-~~~~~~-----  235 (304)
T 2jam_A          169 GTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEET--ESKLFEKIKE---G-YY-EFESP-FWDDIS-----  235 (304)
T ss_dssp             SCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSC--HHHHHHHHHH---C-CC-CCCTT-TTTTSC-----
T ss_pred             CCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC--HHHHHHHHHc---C-CC-CCCcc-ccccCC-----
Confidence            8999999999999999999999999999999999999987532  1111111111   1 00 00111 111121     


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       .++.+++.+|++.||++|||++|+++
T Consensus       236 -~~~~~li~~~l~~dp~~Rps~~~~l~  261 (304)
T 2jam_A          236 -ESAKDFICHLLEKDPNERYTCEKALS  261 (304)
T ss_dssp             -HHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             -HHHHHHHHHHcCCChhHCcCHHHHhc
Confidence             25667888999999999999999975

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=3.5e-35  Score=319.11  Aligned_cols=243  Identities=20%  Similarity=0.303  Sum_probs=180.5

Q ss_pred             cccccCCCCCccEEEEEEEecC---CcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLAN---DMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~---~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      .....+|+|++|.||+|+...+   +..||+|+...... ...+.+.+|+..+.+ ++|||||++++++. ++..|+|||
T Consensus        18 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~-~~~~~lv~e   95 (281)
T 1mp8_A           18 ELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQ-FDHPHIVKLIGVIT-ENPVWIIME   95 (281)
T ss_dssp             EEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHT-CCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred             EEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHh-CCCCccceEEEEEc-cCccEEEEe
Confidence            3344578999999999998543   45688888754322 223457788887777 69999999999985 567899999


Q ss_pred             ccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---
Q 002105          762 YIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       762 y~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---  834 (966)
                      |+++|+|.++++    .+++..+..++.|+++||+|||.   .+|+||||||+||+++.+  ..+++.|||.+....   
T Consensus        96 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~~~  170 (281)
T 1mp8_A           96 LCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSN--DCVKLGDFGLSRYMEDST  170 (281)
T ss_dssp             CCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEET--TEEEECC-----------
T ss_pred             cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecccccHHHEEECCC--CCEEECccccccccCccc
Confidence            999999999996    38899999999999999999994   589999999999999865  468999999875422   


Q ss_pred             ----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCccccccccccc
Q 002105          835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                          ....+++.|+|||.+.+..++.++|||||||++|||++ |+.||..... .+ ....+..   ...      +...
T Consensus       171 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~-~~-~~~~i~~---~~~------~~~~  239 (281)
T 1mp8_A          171 YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN-ND-VIGRIEN---GER------LPMP  239 (281)
T ss_dssp             --------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG-GG-HHHHHHT---TCC------CCCC
T ss_pred             ccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCH-HH-HHHHHHc---CCC------CCCC
Confidence                22345778999999988899999999999999999997 9999875422 11 2122211   110      0111


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      ...+      .++.+++.+|++.||++|||+.|+++.|++++.
T Consensus       240 ~~~~------~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~  276 (281)
T 1mp8_A          240 PNCP------PTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE  276 (281)
T ss_dssp             TTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCC------HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence            1222      246678889999999999999999999998544

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=5.6e-35  Score=318.71  Aligned_cols=244  Identities=21%  Similarity=0.319  Sum_probs=193.7

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .....+|+|++|.||+|+...++..||+|++... ....+.+.+|+..+.+ ++|||||++++++.+++..++||||+++
T Consensus        16 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~~v~e~~~~   93 (288)
T 3kfa_A           16 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKE-IKHPNLVQLLGVCTREPPFYIITEFMTY   93 (288)
T ss_dssp             EEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC-STHHHHHHHHHHHHHH-CCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred             eEEeecCCCCceeEEEeEecCCCEEEEEEecCcC-HHHHHHHHHHHHHHHh-CCCCCEeeEEEEEccCCCEEEEEEcCCC
Confidence            3445678999999999999888999999988543 2334567888888877 6999999999999999999999999999


Q ss_pred             CCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-----
Q 002105          766 KELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----  835 (966)
Q Consensus       766 g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-----  835 (966)
                      |+|.++++.     +++..+..++.+++.||+|||.   .+|+||||||+||+++.+.  .+++.|||.+.....     
T Consensus        94 ~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~--~~~l~Dfg~~~~~~~~~~~~  168 (288)
T 3kfa_A           94 GNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENH--LVKVADFGLSRLMTGDTYTA  168 (288)
T ss_dssp             EEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHH---HTCCCSCCSGGGEEECGGG--CEEECCCCGGGTSCSSSSEE
T ss_pred             CcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHH---CCccCCCCCcceEEEcCCC--CEEEccCccceeccCCcccc
Confidence            999999963     8899999999999999999995   4899999999999998654  578999998754321     


Q ss_pred             --CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          836 --KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       836 --~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                        ...+|+.|+|||++.+..++.++||||||+++|||++ |+.||....  ...+.+......         .+......
T Consensus       169 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~--~~~~~~~~~~~~---------~~~~~~~~  237 (288)
T 3kfa_A          169 HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEKDY---------RMERPEGC  237 (288)
T ss_dssp             ETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHHTTC---------CCCCCTTC
T ss_pred             ccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHhccC---------CCCCCCCC
Confidence              2245778999999998899999999999999999999 999987532  122222222110         11111112


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      +      .++.+++..|++.||++|||++||++.|++.+..
T Consensus       238 ~------~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~  272 (288)
T 3kfa_A          238 P------EKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE  272 (288)
T ss_dssp             C------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             C------HHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHh
Confidence            2      2566788899999999999999999999985543

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=5.1e-35  Score=352.18  Aligned_cols=239  Identities=17%  Similarity=0.234  Sum_probs=185.8

Q ss_pred             cCCCCCccEEEEEEEe--cCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          690 SRGKKGVSSSYKVRSL--ANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~--~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .+|+|+||.||+|...  ..+..||||++.....  ...+++.+|+..+.+ ++|||||+++|+|.. +..++|||||++
T Consensus       376 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~-l~hpnIv~l~~~~~~-~~~~lv~E~~~~  453 (635)
T 4fl3_A          376 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQ-LDNPYIVRMIGICEA-ESWMLVMEMAEL  453 (635)
T ss_dssp             EEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHH-CCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             EeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHh-CCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence            4789999999999653  4567899998865322  223568888888877 699999999999975 458899999999


Q ss_pred             CCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--------
Q 002105          766 KELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--------  834 (966)
Q Consensus       766 g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--------  834 (966)
                      |+|.++++   .++|..+..++.||+.||+|||.   .+||||||||+|||++.+.  .++++|||++....        
T Consensus       454 g~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~---~~iiHrDLkp~NILl~~~~--~~kL~DFGla~~~~~~~~~~~~  528 (635)
T 4fl3_A          454 GPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQH--YAKISDFGLSKALRADENYYKA  528 (635)
T ss_dssp             EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETT--EEEECCTTHHHHTTC-------
T ss_pred             CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeCCCCChHhEEEeCCC--CEEEEEcCCccccccCcccccc
Confidence            99999996   38999999999999999999994   5899999999999999654  67899999875321        


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                       ....+|+.|+|||++.+..++.++|||||||++|||+| |+.||.+..  ...+.+.+.   ....      +.....+
T Consensus       529 ~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~--~~~~~~~i~---~~~~------~~~p~~~  597 (635)
T 4fl3_A          529 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK--GSEVTAMLE---KGER------MGCPAGC  597 (635)
T ss_dssp             ------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC--HHHHHHHHH---TTCC------CCCCTTC
T ss_pred             ccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHH---cCCC------CCCCCCC
Confidence             12345678999999999999999999999999999999 999997542  122212221   1111      0111112


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      +      .++.+++..||+.||++||++++|+++|++++.
T Consensus       598 ~------~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~  631 (635)
T 4fl3_A          598 P------REMYDLMNLCWTYDVENRPGFAAVELRLRNYYY  631 (635)
T ss_dssp             C------HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             C------HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            2      356778889999999999999999999998543

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=1.4e-34  Score=314.06  Aligned_cols=243  Identities=19%  Similarity=0.336  Sum_probs=190.1

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .....+|+|++|.||+|+. .++..||||++.... ...+.+.+|+..+.+ ++||||+++++++.. +..++||||+++
T Consensus        16 ~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~-~~~~~v~e~~~~   91 (279)
T 1qpc_A           16 KLVERLGAGQFGEVWMGYY-NGHTKVAVKSLKQGS-MSPDAFLAEANLMKQ-LQHQRLVRLYAVVTQ-EPIYIITEYMEN   91 (279)
T ss_dssp             EEEEEEEEETTEEEEEEEE-TTTEEEEEEEECTTS-SCHHHHHHHHHHHHH-CCCTTBCCEEEEECS-SSCEEEEECCTT
T ss_pred             hheeeecCCCCeEEEEEEE-cCCcEEEEEEecCCc-ccHHHHHHHHHHHHh-CCCcCcceEEEEEcC-CCcEEEEecCCC
Confidence            3445678999999999997 677789999885432 334567888888877 699999999999874 568999999999


Q ss_pred             CCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          766 KELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       766 g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      |+|.++++     .+++.++..++.|++.||+|||   +.+|+||||||+||+++++.  .++++|||.+....      
T Consensus        92 ~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~--~~kl~Dfg~~~~~~~~~~~~  166 (279)
T 1qpc_A           92 GSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTL--SCKIADFGLARLIEDNEYTA  166 (279)
T ss_dssp             CBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTS--CEEECCCTTCEECSSSCEEC
T ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHhhEEEcCCC--CEEECCCcccccccCccccc
Confidence            99999985     4899999999999999999999   45899999999999998654  57899999876432      


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                       ....+++.|+|||.+.+..++.++|||||||++|||+| |+.||....  .....+...   ...      .+......
T Consensus       167 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~--~~~~~~~~~---~~~------~~~~~~~~  235 (279)
T 1qpc_A          167 REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMT--NPEVIQNLE---RGY------RMVRPDNC  235 (279)
T ss_dssp             CTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCC--HHHHHHHHH---TTC------CCCCCTTC
T ss_pred             ccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccC--HHHHHHHHh---ccc------CCCCcccc
Confidence             22345778999999988889999999999999999999 899986532  111112111   110      01111112


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS  954 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~  954 (966)
                      +      .++.+++.+|++.||++|||++++++.|++++...
T Consensus       236 ~------~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~  271 (279)
T 1qpc_A          236 P------EELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT  271 (279)
T ss_dssp             C------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             c------HHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhc
Confidence            2      25667888999999999999999999999965543

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=316.47  Aligned_cols=238  Identities=23%  Similarity=0.330  Sum_probs=184.5

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      ...+|+|++|.||+|+...++..||||++........+.+.+|+..+.+ ++|||||++++++..++..++||||+++|+
T Consensus        27 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~  105 (295)
T 2clq_A           27 RVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKH-LKHKNIVQYLGSFSENGFIKIFMEQVPGGS  105 (295)
T ss_dssp             BCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHT-CCCTTBCCEEEEEEETTEEEEEEECCSEEE
T ss_pred             cEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHh-CCCCCEeeEeeEEEeCCcEEEEEEeCCCCC
Confidence            3357889999999999988999999999876555445667788877777 699999999999999999999999999999


Q ss_pred             HHHHHHc------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------C
Q 002105          768 LSEVLRN------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------S  835 (966)
Q Consensus       768 L~~~l~~------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~  835 (966)
                      |.++++.      +++..+..++.|++.||+|||.   .+|+||||||+||+++.. ...++++|||.+....      .
T Consensus       106 L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~-~~~~kl~Dfg~~~~~~~~~~~~~  181 (295)
T 2clq_A          106 LSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHD---NQIVHRDIKGDNVLINTY-SGVLKISDFGTSKRLAGINPCTE  181 (295)
T ss_dssp             HHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETT-TCCEEECCTTTCEESCC-----C
T ss_pred             HHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHh---CCEEccCCChhhEEEECC-CCCEEEeecccccccCCCCCccc
Confidence            9999963      4688888999999999999994   589999999999999862 3467899999886432      2


Q ss_pred             CCcCCcccccccccCCCC--CCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          836 KSINSSAYVAPETKESKD--ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~--~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      ...|++.|+|||++.+..  ++.++|||||||++|||+||+.||..........  +......       ..+.+....+
T Consensus       182 ~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~  252 (295)
T 2clq_A          182 TFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAM--FKVGMFK-------VHPEIPESMS  252 (295)
T ss_dssp             CCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHH--HHHHHHC-------CCCCCCTTSC
T ss_pred             ccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHH--Hhhcccc-------ccccccccCC
Confidence            346899999999986643  7899999999999999999999986421111111  1110010       1112222222


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                            .++.+++.+||+.||++|||+.|+++
T Consensus       253 ------~~~~~li~~~l~~dp~~Rps~~~ll~  278 (295)
T 2clq_A          253 ------AEAKAFILKCFEPDPDKRACANDLLV  278 (295)
T ss_dssp             ------HHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred             ------HHHHHHHHHHccCChhhCCCHHHHhc
Confidence                  25667888999999999999999875

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=8.2e-35  Score=328.73  Aligned_cols=242  Identities=22%  Similarity=0.367  Sum_probs=179.8

Q ss_pred             ccCCCCCccEEEEEEEecCC---cEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEec-CCeeEEEEEcc
Q 002105          689 TSRGKKGVSSSYKVRSLAND---MQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS-EKAAYLVYEYI  763 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~---~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~-~~~~~lv~Ey~  763 (966)
                      ..+|+|+||.||+|+...++   ..||||.+..... ...++|.+|+..+.+ ++|||||+++++|.. ++..++||||+
T Consensus        95 ~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~-l~hpnIv~~~~~~~~~~~~~~lv~e~~  173 (373)
T 3c1x_A           95 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD-FSHPNVLSLLGICLRSEGSPLVVLPYM  173 (373)
T ss_dssp             EEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTT-CCCTTBCCCCEEECCCSSCCEEEEECC
T ss_pred             cEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHh-CCCCCcceEEEEEEcCCCCeEEEEECC
Confidence            45799999999999975443   3578887754322 233557778877777 699999999999765 56789999999


Q ss_pred             CCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          764 EGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       764 ~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      ++|+|.++++.    +++..+..++.||++||+|||   +.+|+||||||+||+++.+.  .++++|||++....     
T Consensus       174 ~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~--~~kL~DFG~a~~~~~~~~~  248 (373)
T 3c1x_A          174 KHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKF--TVKVADFGLARDMYDKEFD  248 (373)
T ss_dssp             TTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTC--CEEECCC------------
T ss_pred             CCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCccchheEEECCCC--CEEEeeccccccccccccc
Confidence            99999999963    789999999999999999999   45899999999999998654  57899999885321     


Q ss_pred             -----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccc
Q 002105          835 -----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI  908 (966)
Q Consensus       835 -----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  908 (966)
                           ....+|+.|+|||++.+..++.++|||||||++|||+| |.+||.... ..+.. ....   .....   ..|  
T Consensus       249 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~-~~~~~-~~~~---~~~~~---~~p--  318 (373)
T 3c1x_A          249 SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN-TFDIT-VYLL---QGRRL---LQP--  318 (373)
T ss_dssp             ---------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC-SSCHH-HHHH---TTCCC---CCC--
T ss_pred             cccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCC-HHHHH-HHHH---cCCCC---CCC--
Confidence                 22346778999999999999999999999999999999 666765432 12211 2111   11110   111  


Q ss_pred             cCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       909 ~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                       ..++      .++.+++.+||+.||++|||++||++.|++++..
T Consensus       319 -~~~~------~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~  356 (373)
T 3c1x_A          319 -EYCP------DPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  356 (373)
T ss_dssp             -TTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             -CCCC------HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence             1122      2466788899999999999999999999996554

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=9.4e-35  Score=330.65  Aligned_cols=238  Identities=19%  Similarity=0.286  Sum_probs=182.3

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcC-CCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIM-HPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~-H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      +.....+|+|+||.||++.. ..+..||||++....  ....+.+.+|+..+.++-. |||||++++++..++..|+|||
T Consensus        58 y~~~~~LG~G~fg~Vy~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~E  136 (390)
T 2zmd_A           58 YSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME  136 (390)
T ss_dssp             EEEEEEEECCSSEEEEEEEC-TTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEE
T ss_pred             eEEEEEEccCCCeEEEEEEc-CCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEEe
Confidence            45556789999999999997 568899999986432  2233567888888888422 6999999999999999999999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-----
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-----  833 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-----  833 (966)
                       +.+|+|.++++   .+++.++..++.||+.||+|||   +.+|+||||||+|||+++   ..++++|||++...     
T Consensus       137 -~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~~---~~~kl~DFG~a~~~~~~~~  209 (390)
T 2zmd_A          137 -CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVD---GMLKLIDFGIANQMQPDTT  209 (390)
T ss_dssp             -CCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCCGGGEEESS---SCEEECCCSSSCCC-----
T ss_pred             -cCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEEEC---CeEEEEecCccccccCCCc
Confidence             57899999996   3789999999999999999999   568999999999999974   45899999998642     


Q ss_pred             ---CCCCcCCcccccccccCC-----------CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCc
Q 002105          834 ---DSKSINSSAYVAPETKES-----------KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCH  899 (966)
Q Consensus       834 ---~~~~~~~~~y~aPE~~~~-----------~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  899 (966)
                         .....||+.|||||++.+           ..++.++|||||||++|||+||+.||.........+    ........
T Consensus       210 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~----~~~~~~~~  285 (390)
T 2zmd_A          210 SVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKL----HAIIDPNH  285 (390)
T ss_dssp             ----CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHH----HHHHCTTS
T ss_pred             cccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHH----HHHhCccc
Confidence               123468999999998764           468999999999999999999999997542211111    11111110


Q ss_pred             ccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          900 LDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       900 ~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .     .......+      .++.+++.+||+.||++|||+.||++
T Consensus       286 ~-----~~~~~~~~------~~~~~li~~~L~~dP~~Rps~~ell~  320 (390)
T 2zmd_A          286 E-----IEFPDIPE------KDLQDVLKCCLKRDPKQRISIPELLA  320 (390)
T ss_dssp             C-----CCCCCCSC------HHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             c-----CCCCccch------HHHHHHHHHHcccChhhCCCHHHHhh
Confidence            0     00111111      24667888999999999999999975

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=4.1e-35  Score=325.90  Aligned_cols=240  Identities=17%  Similarity=0.240  Sum_probs=187.2

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ..+|+|++|.||+|+...++..||+|++.....  ....++.+|+..+.++.+|||||++++++..++..++||||+++|
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv~e~~~~~  114 (327)
T 3lm5_A           35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGG  114 (327)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCTTE
T ss_pred             ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEEEEecCCC
Confidence            357899999999999988999999999865322  223567788888887556899999999999999999999999999


Q ss_pred             CHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC-CceEEEeccccceecC-----C
Q 002105          767 ELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAYCTD-----S  835 (966)
Q Consensus       767 ~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~-~~~~~~~~~~~~~~~~-----~  835 (966)
                      +|.+++.     .+++..+..++.|++.||+|||   ..+|+||||||+||+++... ...++++|||.+....     .
T Consensus       115 ~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~  191 (327)
T 3lm5_A          115 EIFSLCLPELAEMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELR  191 (327)
T ss_dssp             EGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC-------
T ss_pred             cHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCChHHEEEecCCCCCcEEEeeCccccccCCccccc
Confidence            9999884     4899999999999999999999   45899999999999998632 3568999999986532     2


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...||+.|+|||++.+..++.++|||||||++|||+||+.||..... .+....... .  ...    ..+......+  
T Consensus       192 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-~~~~~~i~~-~--~~~----~~~~~~~~~~--  261 (327)
T 3lm5_A          192 EIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDN-QETYLNISQ-V--NVD----YSEETFSSVS--  261 (327)
T ss_dssp             --CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHH-T--CCC----CCTTTTTTSC--
T ss_pred             cccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc-hHHHHHHHh-c--ccc----cCchhhcccC--
Confidence            34689999999999999999999999999999999999999975421 111111111 0  000    0000111111  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                          .++.+++.+|++.||++|||++|+++
T Consensus       262 ----~~~~~li~~~L~~dP~~Rpt~~~ll~  287 (327)
T 3lm5_A          262 ----QLATDFIQSLLVKNPEKRPTAEICLS  287 (327)
T ss_dssp             ----HHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             ----HHHHHHHHHHcCCChhhCcCHHHHhC
Confidence                24667788999999999999999875

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=5.4e-35  Score=346.24  Aligned_cols=244  Identities=18%  Similarity=0.298  Sum_probs=191.6

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|+|+||.||+|+. ..+..||||++.... ...++|.+|+..+.+ ++|||||+++++|.+ +..|+|||||++|
T Consensus       271 ~~~~lG~G~fg~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~-l~hpniv~~~~~~~~-~~~~lv~e~~~~g  346 (535)
T 2h8h_A          271 LEVKLGQGCFGEVWMGTW-NGTTRVAIKTLKPGT-MSPEAFLQEAQVMKK-LRHEKLVQLYAVVSE-EPIYIVTEYMSKG  346 (535)
T ss_dssp             EEEEEEECSSEEEEEEEE-TTTEEEEEEEECTTS-SCHHHHHHHHHHHHH-CCCTTBCCEEEEECS-SSCEEEECCCTTE
T ss_pred             hheecccCCCeEEEEEEE-CCCceEEEEEeCCCC-CCHHHHHHHHHHHHh-CCCCCEeeEEEEEee-ccceEeeehhcCC
Confidence            344578999999999998 566789999886533 334578888888877 699999999999976 6789999999999


Q ss_pred             CHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-------
Q 002105          767 ELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------  834 (966)
Q Consensus       767 ~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-------  834 (966)
                      +|.++++.     +++.++.+++.||++||+|||   ..+||||||||+|||++.+  ..++++|||++....       
T Consensus       347 sL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~--~~~kl~DFG~a~~~~~~~~~~~  421 (535)
T 2h8h_A          347 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGEN--LVCKVADFGLARLIEDNEYTAR  421 (535)
T ss_dssp             EHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGG--GCEEECCTTSTTTCCCHHHHTT
T ss_pred             cHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEEcCC--CcEEEcccccceecCCCceecc
Confidence            99999962     899999999999999999999   4589999999999999865  457899999985421       


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      ....++..|+|||++....++.++|||||||++|||+| |+.||.+..  ...+.+.+.   .....      .....++
T Consensus       422 ~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~--~~~~~~~i~---~~~~~------~~~~~~~  490 (535)
T 2h8h_A          422 QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQVE---RGYRM------PCPPECP  490 (535)
T ss_dssp             CSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCC--HHHHHHHHH---TTCCC------CCCTTCC
T ss_pred             cCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHH---cCCCC------CCCCCCC
Confidence            23346778999999988899999999999999999999 999987532  112212221   11111      0111122


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCCc
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISSC  956 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~~~  956 (966)
                            .++.+++.+||+.||++|||+++|+++|++++.....
T Consensus       491 ------~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~~~  527 (535)
T 2h8h_A          491 ------ESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEP  527 (535)
T ss_dssp             ------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCCSC
T ss_pred             ------HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhccCc
Confidence                  2566788899999999999999999999996554433

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=6e-35  Score=329.93  Aligned_cols=239  Identities=13%  Similarity=0.122  Sum_probs=183.9

Q ss_pred             cccccCCCCCccEEEEE-----EEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcC---CCceeEEeeEEecCCeeE
Q 002105          686 ENLTSRGKKGVSSSYKV-----RSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHGVCRSEKAAY  757 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~-----~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~---H~niv~l~g~~~~~~~~~  757 (966)
                      .....+|+|+||.||+|     ....+++.||||++...   ...++..|+..+.+ ++   |+|||++++++..++..|
T Consensus        68 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~-l~~~~~~~iv~~~~~~~~~~~~~  143 (365)
T 3e7e_A           68 YVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMER-LKPSMQHMFMKFYSAHLFQNGSV  143 (365)
T ss_dssp             EEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHH-SCGGGGGGBCCEEEEEECSSCEE
T ss_pred             EEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHH-hhhhhhhhhhhhheeeecCCCcE
Confidence            34456799999999999     45678999999998543   23456666666655 45   999999999999999999


Q ss_pred             EEEEccCCCCHHHHHH--------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcC---------CCCc
Q 002105          758 LVYEYIEGKELSEVLR--------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDG---------KDEP  820 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~--------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~---------~~~~  820 (966)
                      +|||||++|+|.++++        .++|..+..++.||++||+|||   +.+||||||||+|||++.         +...
T Consensus       144 lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~  220 (365)
T 3e7e_A          144 LVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDDLSA  220 (365)
T ss_dssp             EEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECGGGTCC------CT
T ss_pred             EEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEecccccCccccccccC
Confidence            9999999999999995        3899999999999999999999   568999999999999986         1145


Q ss_pred             eEEEeccccceec--------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHH
Q 002105          821 HLRLSVPGLAYCT--------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWAR  892 (966)
Q Consensus       821 ~~~~~~~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~  892 (966)
                      .++++|||++...        .....||+.|||||++.+..++.++|||||||++|||+||+.||........       
T Consensus       221 ~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~-------  293 (365)
T 3e7e_A          221 GLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGEC-------  293 (365)
T ss_dssp             TEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEE-------
T ss_pred             CEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCce-------
Confidence            6899999998532        2345789999999999999999999999999999999999999853211100       


Q ss_pred             HhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCC-CCHHHHHHHHHHhhcc
Q 002105          893 YCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR-PCASDVTKTLESCFRI  953 (966)
Q Consensus       893 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~R-Pt~~~v~~~L~~~~~~  953 (966)
                            .    ++...... . ..+.   +.++...|++.+|.+| |+++++.+.|++.+..
T Consensus       294 ------~----~~~~~~~~-~-~~~~---~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~  340 (365)
T 3e7e_A          294 ------K----PEGLFRRL-P-HLDM---WNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQ  340 (365)
T ss_dssp             ------E----ECSCCTTC-S-SHHH---HHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             ------e----echhcccc-C-cHHH---HHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHH
Confidence                  0    11111111 1 1233   3345668899999998 6789999999886544

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=3.8e-34  Score=315.37  Aligned_cols=253  Identities=21%  Similarity=0.243  Sum_probs=184.8

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc-----cccchHHHHHHHHhh--cCCCceeEEeeEEecCC---
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-----TTSSFWPDVSQFGKL--IMHPNIVRLHGVCRSEK---  754 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-----~~~~~~~e~~~~~~~--~~H~niv~l~g~~~~~~---  754 (966)
                      +.....+|+|++|.||+|++..++..||||++......     ....+.+|+..+.++  ++|||||+++++|....   
T Consensus        11 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~   90 (308)
T 3g33_A           11 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDR   90 (308)
T ss_dssp             CEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSS
T ss_pred             eEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCC
Confidence            44556679999999999999889999999998643211     123456676665542  35999999999998755   


Q ss_pred             --eeEEEEEccCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecc
Q 002105          755 --AAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP  827 (966)
Q Consensus       755 --~~~lv~Ey~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~  827 (966)
                        ..++||||++ |+|.++++.     +++..+..++.|++.||+|||.   .+|+||||||+||+++.+.  .++++||
T Consensus        91 ~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~Nil~~~~~--~~kl~Df  164 (308)
T 3g33_A           91 EIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHA---NCIVHRDLKPENILVTSGG--TVKLADF  164 (308)
T ss_dssp             EEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCTTTEEECTTS--CEEECSC
T ss_pred             ceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCC--CEEEeeC
Confidence              5899999998 699999963     8999999999999999999994   5899999999999998654  5789999


Q ss_pred             ccceecC-----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccc
Q 002105          828 GLAYCTD-----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDT  902 (966)
Q Consensus       828 ~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  902 (966)
                      |.+....     ....||+.|+|||++.+..++.++|||||||++|||+||+.||.+... .+....... .........
T Consensus       165 g~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~-~~~~~~i~~-~~~~~~~~~  242 (308)
T 3g33_A          165 GLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSE-ADQLGKIFD-LIGLPPEDD  242 (308)
T ss_dssp             SCTTTSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSH-HHHHHHHHH-HHCCCCTTT
T ss_pred             ccccccCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHH-HhCCCChhh
Confidence            9885432     224679999999999999999999999999999999999999976422 222211111 111000001


Q ss_pred             ccc------ccccCCCcchH-----HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          903 WVD------PFIRGHVSSIQ-----NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       903 ~~d------~~~~~~~~~~~-----~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      |..      ...........     +...++.+++.+|++.||++|||+.|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  296 (308)
T 3g33_A          243 WPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ  296 (308)
T ss_dssp             SCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence            100      00000000000     01135667888999999999999999875

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=2.1e-34  Score=338.71  Aligned_cols=241  Identities=21%  Similarity=0.330  Sum_probs=185.1

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .....+|+|++|.||+|+...++..||+|++....  ......+.+|+..+.+ ++|||||+++++|.+++..|+|||||
T Consensus        40 ~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~-l~hpniv~~~~~~~~~~~~~lv~e~~  118 (494)
T 3lij_A           40 QRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKL-LDHPNIMKLYDFFEDKRNYYLVMECY  118 (494)
T ss_dssp             EEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTT-CCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             EEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHh-CCCCCCCeEEEEEEeCCEEEEEEecC
Confidence            44566799999999999998899999999986542  2234557788877777 79999999999999999999999999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC-CceEEEeccccceecC-----
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~-~~~~~~~~~~~~~~~~-----  834 (966)
                      ++|+|.+++.   .+++..+..++.||+.||+|||   +.+|+||||||+||+++... ...++++|||++....     
T Consensus       119 ~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~~  195 (494)
T 3lij_A          119 KGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKM  195 (494)
T ss_dssp             CSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBCB
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCccc
Confidence            9999998885   4899999999999999999999   45899999999999998643 3568999999886532     


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ....||+.|+|||++. ..|+.++||||+||++|||++|+.||.+... .+.. ..+..   . ... +..|. ....+ 
T Consensus       196 ~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-~~~~-~~i~~---~-~~~-~~~~~-~~~~s-  265 (494)
T 3lij_A          196 KERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTD-QEIL-RKVEK---G-KYT-FDSPE-WKNVS-  265 (494)
T ss_dssp             CCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHH-HHHHH---T-CCC-CCSGG-GTTSC-
T ss_pred             cccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCH-HHHH-HHHHh---C-CCC-CCchh-cccCC-
Confidence            3456899999999886 5699999999999999999999999975421 1111 21111   1 000 01111 11121 


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                           .++.+++.+|++.||++|||+.|+++
T Consensus       266 -----~~~~~li~~~L~~dp~~R~s~~e~l~  291 (494)
T 3lij_A          266 -----EGAKDLIKQMLQFDSQRRISAQQALE  291 (494)
T ss_dssp             -----HHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             -----HHHHHHHHHHCCCChhhCccHHHHhc
Confidence                 24567788999999999999999874

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=6e-35  Score=339.32  Aligned_cols=253  Identities=18%  Similarity=0.222  Sum_probs=183.2

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEecC------Cee
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE------KAA  756 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~------~~~  756 (966)
                      +.....+|+|++|.||+|++..++..||||++...  .....+.+.+|+..+.+ ++|||||++++++...      +..
T Consensus        64 y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~-l~hpnIv~l~~~~~~~~~~~~~~~~  142 (464)
T 3ttj_A           64 YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKC-VNHKNIISLLNVFTPQKTLEEFQDV  142 (464)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHH-CCCTTBCCCSEEECSCCSTTTCCEE
T ss_pred             eEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHh-CCCCCCCcEEEEEccCCccccCCeE
Confidence            44566789999999999999889999999998653  22234456778877777 6999999999999654      457


Q ss_pred             EEEEEccCCCCHHHHHH-cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-
Q 002105          757 YLVYEYIEGKELSEVLR-NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       757 ~lv~Ey~~~g~L~~~l~-~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-  834 (966)
                      |+|||||+++ |.+.++ .+++..+..++.||+.||+|||.   .+|+||||||+|||++.+.  .++++|||++.... 
T Consensus       143 ~lv~E~~~~~-l~~~~~~~l~~~~~~~~~~qil~aL~~lH~---~~iiHrDlkp~NIll~~~~--~~kl~DFG~a~~~~~  216 (464)
T 3ttj_A          143 YLVMELMDAN-LCQVIQMELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDC--TLKILDFGLARTAGT  216 (464)
T ss_dssp             EEEEECCSEE-HHHHHTSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTS--CEEECCCCCC-----
T ss_pred             EEEEeCCCCC-HHHHHhhcCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChHhEEEeCCC--CEEEEEEEeeeecCC
Confidence            9999999965 555554 59999999999999999999994   5899999999999999754  58999999986532 


Q ss_pred             ----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHh----------------
Q 002105          835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYC----------------  894 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~----------------  894 (966)
                          ...+||+.|+|||++.+..|+.++||||+||++|||++|+.||.+... .+.+.......                
T Consensus       217 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~-~~~~~~i~~~lg~p~~~~~~~~~~~~~  295 (464)
T 3ttj_A          217 SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDY-IDQWNKVIEQLGTPCPEFMKKLQPTVR  295 (464)
T ss_dssp             CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCSCCHHHHTTSCHHHH
T ss_pred             CcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHhcCCCCHHHHHHcchhhh
Confidence                335789999999999999999999999999999999999999976421 11111111100                


Q ss_pred             --hccC-ccc-----ccccccc-cCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          895 --YSDC-HLD-----TWVDPFI-RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       895 --~~~~-~~~-----~~~d~~~-~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                        .... ...     ......+ ............++.+++.+|++.||++|||++|+++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  355 (464)
T 3ttj_A          296 NYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ  355 (464)
T ss_dssp             HHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             hHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence              0000 000     0000000 0000000112346788999999999999999999875

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.5e-35  Score=327.23  Aligned_cols=238  Identities=18%  Similarity=0.285  Sum_probs=181.2

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCC--CceeEEeeEEecCCeeEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMH--PNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H--~niv~l~g~~~~~~~~~lv~  760 (966)
                      +.....+|+|++|.||++.. .++..||||++.....  ...+.+.+|+..+.+ ++|  ||||++++++..++..|+||
T Consensus        11 y~i~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~~~~~~iv~~~~~~~~~~~~~lv~   88 (343)
T 3dbq_A           11 YSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNK-LQQHSDKIIRLYDYEITDQYIYMVM   88 (343)
T ss_dssp             EEEEEEESCCSSEEEEEEEC-TTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHH-HTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             EEEEEEEecCCCeEEEEEEe-CCCCEEEEEEeeccccchHHHHHHHHHHHHHHh-hhhcCCceEEEeeeEeeCCEEEEEE
Confidence            34456679999999999987 7788999999864322  223557788888887 565  99999999999999999999


Q ss_pred             EccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----
Q 002105          761 EYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----  833 (966)
Q Consensus       761 Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----  833 (966)
                      | +.+|+|.++++   .+++.++..++.||+.||+|||.   .+|+||||||+|||+++   ..++++|||++...    
T Consensus        89 e-~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~---~~iiHrDikp~NIll~~---~~~kl~DFG~a~~~~~~~  161 (343)
T 3dbq_A           89 E-CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIVD---GMLKLIDFGIANQMQPDT  161 (343)
T ss_dssp             C-CCSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEET---TEEEECCCSSSCCC----
T ss_pred             e-CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCcceEEEEC---CcEEEeecccccccCccc
Confidence            9 56789999996   48999999999999999999994   58999999999999974   45899999998542    


Q ss_pred             ----CCCCcCCcccccccccCC-----------CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccC
Q 002105          834 ----DSKSINSSAYVAPETKES-----------KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDC  898 (966)
Q Consensus       834 ----~~~~~~~~~y~aPE~~~~-----------~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  898 (966)
                          .....||+.|+|||++.+           ..++.++|||||||++|||+||+.||..........    .......
T Consensus       162 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~----~~~~~~~  237 (343)
T 3dbq_A          162 TSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKL----HAIIDPN  237 (343)
T ss_dssp             --------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHH----HHHHCTT
T ss_pred             ccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHH----HHHhcCC
Confidence                123468999999998754           678999999999999999999999997543221111    1111111


Q ss_pred             cccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          899 HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       899 ~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      ..     .......+      .++.+++.+||+.||++|||+.|+++.
T Consensus       238 ~~-----~~~~~~~~------~~l~~li~~~L~~dp~~Rpt~~e~l~h  274 (343)
T 3dbq_A          238 HE-----IEFPDIPE------KDLQDVLKCCLKRDPKQRISIPELLAH  274 (343)
T ss_dssp             SC-----CCCCCCSC------HHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             cc-----cCCcccCC------HHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence            00     00111111      246678889999999999999999753

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.8e-34  Score=316.31  Aligned_cols=243  Identities=16%  Similarity=0.260  Sum_probs=186.9

Q ss_pred             ccCCCCCccEEEEEEEecCCc---EEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCee-EEEEEcc
Q 002105          689 TSRGKKGVSSSYKVRSLANDM---QFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAA-YLVYEYI  763 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~---~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~-~lv~Ey~  763 (966)
                      ..+|+|++|.||+|+...++.   .||+|++..... ...+.+.+|+..+.+ ++|||||++++++.+++.. ++||||+
T Consensus        27 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~~v~e~~  105 (298)
T 3pls_A           27 RVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRG-LNHPNVLALIGIMLPPEGLPHVLLPYM  105 (298)
T ss_dssp             EEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHT-CCCTTBCCCCEEECCSSSCCEEEECCC
T ss_pred             ceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHh-CCCCCeeeEEEEEecCCCCcEEEEecc
Confidence            346889999999999765554   789998864332 223457788888777 6999999999999876654 9999999


Q ss_pred             CCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------
Q 002105          764 EGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------  833 (966)
Q Consensus       764 ~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------  833 (966)
                      ++|+|.++++.    +++..+..++.|++.||+|||.   .+|+||||||+||+++.+.  .++++|||.+...      
T Consensus       106 ~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nili~~~~--~~kl~Dfg~~~~~~~~~~~  180 (298)
T 3pls_A          106 CHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAE---QKFVHRDLAARNCMLDESF--TVKVADFGLARDILDREYY  180 (298)
T ss_dssp             TTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTC--CEEECCTTSSCTTTTGGGG
T ss_pred             cCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCC--cEEeCcCCCcccccCCccc
Confidence            99999999963    7899999999999999999994   5899999999999998654  5789999987531      


Q ss_pred             ----CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccccc
Q 002105          834 ----DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       834 ----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                          .....+++.|+|||...+..++.++|||||||++|||+||..|+.......+ ..+.....   ..      +...
T Consensus       181 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~-~~~~~~~~---~~------~~~~  250 (298)
T 3pls_A          181 SVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFD-LTHFLAQG---RR------LPQP  250 (298)
T ss_dssp             CSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGG-HHHHHHTT---CC------CCCC
T ss_pred             ccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHH-HHHHhhcC---CC------CCCC
Confidence                1223567899999999999999999999999999999996666543322222 21222211   00      0011


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      ...+      .++.+++.+|++.||.+|||++|++++|++++..
T Consensus       251 ~~~~------~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~  288 (298)
T 3pls_A          251 EYCP------DSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSA  288 (298)
T ss_dssp             TTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ccch------HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence            1111      2566788899999999999999999999996554

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=4.4e-35  Score=324.01  Aligned_cols=246  Identities=20%  Similarity=0.289  Sum_probs=190.1

Q ss_pred             cccccCCCCCccEEEEEEEe-----cCCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCC-eeEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSL-----ANDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK-AAYL  758 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~-----~~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~-~~~l  758 (966)
                      .....+|+|++|.||+|+..     .++..||||++...... ..+.+.+|+..+.++-+|||||+++++|..++ ..++
T Consensus        30 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~~l  109 (316)
T 2xir_A           30 KLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMV  109 (316)
T ss_dssp             EEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEE
T ss_pred             eeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCCceEE
Confidence            44556789999999999853     45678999988654322 23457788888888447999999999998754 5899


Q ss_pred             EEEccCCCCHHHHHHc-------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC
Q 002105          759 VYEYIEGKELSEVLRN-------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE  819 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~~-------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~  819 (966)
                      ||||+++|+|.++++.                   +++..+..++.|+++||+|||   +.+|+||||||+||+++.+  
T Consensus       110 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dikp~Nil~~~~--  184 (316)
T 2xir_A          110 IVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEK--  184 (316)
T ss_dssp             EEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGG--
T ss_pred             EEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCC--
Confidence            9999999999999963                   688999999999999999999   4589999999999999854  


Q ss_pred             ceEEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHH
Q 002105          820 PHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEW  890 (966)
Q Consensus       820 ~~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~  890 (966)
                      ..++++|||.+....        ....+|+.|+|||++.+..++.++|||||||++|||+| |+.||........ +...
T Consensus       185 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~-~~~~  263 (316)
T 2xir_A          185 NVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE-FCRR  263 (316)
T ss_dssp             GCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHH-HHHH
T ss_pred             CCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHH-HHHH
Confidence            457899999886432        12346788999999988899999999999999999999 9999875432221 1121


Q ss_pred             HHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          891 ARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       891 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      ...   ...      +......+      .++.+++.+||+.||++|||+.||++.|++++.
T Consensus       264 ~~~---~~~------~~~~~~~~------~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~  310 (316)
T 2xir_A          264 LKE---GTR------MRAPDYTT------PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  310 (316)
T ss_dssp             HHH---TCC------CCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             hcc---Ccc------CCCCCCCC------HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence            111   110      01111111      246678889999999999999999999998554

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=324.10  Aligned_cols=243  Identities=19%  Similarity=0.278  Sum_probs=175.0

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEe--------cCCeeE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR--------SEKAAY  757 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~--------~~~~~~  757 (966)
                      .....+|+|++|.||+++...++..||||++........+.+.+|+..+.++..|||||++++++.        .....+
T Consensus        31 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~~  110 (337)
T 3ll6_A           31 RVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFL  110 (337)
T ss_dssp             EEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEEEE
T ss_pred             EEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCceEE
Confidence            445567999999999999988999999999866655555678888888888535999999999994        344589


Q ss_pred             EEEEccCCCCHHHHHHc------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccce
Q 002105          758 LVYEYIEGKELSEVLRN------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY  831 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~~------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~  831 (966)
                      +||||++ |+|.++++.      +++..+..++.||+.||+|||.. .++|+||||||+||+++.+.  .++++|||.+.
T Consensus       111 lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~~~ivH~Dikp~NIl~~~~~--~~kl~Dfg~~~  186 (337)
T 3ll6_A          111 LLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ-KPPIIHRDLKVENLLLSNQG--TIKLCDFGSAT  186 (337)
T ss_dssp             EEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS-SSCCBCCCCCGGGCEECTTS--CEEBCCCTTCB
T ss_pred             EEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC-CCCEEEccCCcccEEECCCC--CEEEecCccce
Confidence            9999997 799998863      89999999999999999999944 22399999999999999654  57899999876


Q ss_pred             ecCC------------------CCcCCccccccccc---CCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHH
Q 002105          832 CTDS------------------KSINSSAYVAPETK---ESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEW  890 (966)
Q Consensus       832 ~~~~------------------~~~~~~~y~aPE~~---~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~  890 (966)
                      ....                  ...+|+.|+|||++   .+..++.++|||||||++|||+||+.||.....  .   +.
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~--~---~~  261 (337)
T 3ll6_A          187 TISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAK--L---RI  261 (337)
T ss_dssp             CCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-------------
T ss_pred             eccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhH--H---Hh
Confidence            4321                  23478999999998   567789999999999999999999999864311  0   11


Q ss_pred             HHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          891 ARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       891 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      .....     .  . + .....+      .++.+++.+||+.||++|||+.|+++.|+++..
T Consensus       262 ~~~~~-----~--~-~-~~~~~~------~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~  308 (337)
T 3ll6_A          262 VNGKY-----S--I-P-PHDTQY------TVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAA  308 (337)
T ss_dssp             ----C-----C--C-C-TTCCSS------GGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             hcCcc-----c--C-C-cccccc------hHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            11000     0  0 0 001111      135567889999999999999999999998443

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=2.3e-34  Score=314.18  Aligned_cols=238  Identities=21%  Similarity=0.325  Sum_probs=182.6

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEec----CCeeEEEEEc
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS----EKAAYLVYEY  762 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~----~~~~~lv~Ey  762 (966)
                      ..+|+|++|.||+|....++..||+|++....  ....+.+.+|+..+.+ ++|||||++++++..    ++..++||||
T Consensus        32 ~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~~~~~lv~e~  110 (290)
T 1t4h_A           32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKG-LQHPNIVRFYDSWESTVKGKKCIVLVTEL  110 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTT-CCCTTBCCEEEEEEEESSSCEEEEEEEEC
T ss_pred             eeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHh-CCCCCeeeeeeeeccccCCCceEEEEEEe
Confidence            34789999999999998899999999986542  2233457778877777 699999999999875    4568999999


Q ss_pred             cCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC----
Q 002105          763 IEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS----  835 (966)
Q Consensus       763 ~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~----  835 (966)
                      +++|+|.++++.   +++..+..++.|++.||+|||.. .++|+||||||+||+++.+ ...++++|||.+.....    
T Consensus       111 ~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~~~i~H~dikp~Nil~~~~-~~~~kl~Dfg~~~~~~~~~~~  188 (290)
T 1t4h_A          111 MTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGP-TGSVKIGDLGLATLKRASFAK  188 (290)
T ss_dssp             CCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCSCCCGGGEEESST-TSCEEECCTTGGGGCCTTSBE
T ss_pred             cCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHcC-CCCEEECCCCHHHEEEECC-CCCEEEeeCCCcccccccccc
Confidence            999999999963   89999999999999999999954 2239999999999999732 23578999998854322    


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...||+.|+|||.+.+ .++.++||||+||++|||+||+.||........ .   .........     .+......+  
T Consensus       189 ~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~-~---~~~~~~~~~-----~~~~~~~~~--  256 (290)
T 1t4h_A          189 AVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQ-I---YRRVTSGVK-----PASFDKVAI--  256 (290)
T ss_dssp             ESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHH-H---HHHHTTTCC-----CGGGGGCCC--
T ss_pred             cccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHH-H---HHHHhccCC-----ccccCCCCC--
Confidence            2468999999998864 589999999999999999999999975322211 1   111111111     011111111  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                          .++.+++..|++.||++|||++||++
T Consensus       257 ----~~l~~li~~~l~~dp~~Rps~~ell~  282 (290)
T 1t4h_A          257 ----PEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             ----HHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ----HHHHHHHHHHccCChhhCCCHHHHhh
Confidence                25677888999999999999999875

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=5.2e-35  Score=319.19  Aligned_cols=241  Identities=20%  Similarity=0.301  Sum_probs=176.5

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      +.....+|+|++|.||+|+...+|..||||++.... .....++..|+..+.+.++|||||++++++.+++..++||||+
T Consensus         9 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~   88 (290)
T 3fme_A            9 LEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELM   88 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEEECC
T ss_pred             hhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEEehh
Confidence            344556799999999999998899999999986432 2223344555555556589999999999999999999999999


Q ss_pred             CCCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          764 EGKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       764 ~~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      + |+|.++++       .+++..+..++.|++.||+|||..  .+|+||||||+||+++.+.  .++++|||.+....  
T Consensus        89 ~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~--~~kl~Dfg~~~~~~~~  163 (290)
T 3fme_A           89 D-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALG--QVKMCDFGISGYLVDD  163 (290)
T ss_dssp             S-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH--SCCCCCCCSGGGCEECTTC--CEEBCCC---------
T ss_pred             c-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCC--CEEEeecCCccccccc
Confidence            8 58888774       389999999999999999999943  2899999999999999654  57899999875421  


Q ss_pred             ---CCCcCCccccccccc----CCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccc
Q 002105          835 ---SKSINSSAYVAPETK----ESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF  907 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~----~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  907 (966)
                         ....||+.|+|||++    .+..++.++|||||||++|||+||+.||...............    .....     .
T Consensus       164 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~----~~~~~-----~  234 (290)
T 3fme_A          164 VAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVE----EPSPQ-----L  234 (290)
T ss_dssp             ------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHH----SCCCC-----C
T ss_pred             ccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhc----cCCCC-----c
Confidence               223689999999995    5667899999999999999999999999753222222211111    11000     0


Q ss_pred             ccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       908 ~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .....+      .++.+++.+|++.||++|||+.|+++
T Consensus       235 ~~~~~~------~~~~~li~~~l~~~p~~Rpt~~e~l~  266 (290)
T 3fme_A          235 PADKFS------AEFVDFTSQCLKKNSKERPTYPELMQ  266 (290)
T ss_dssp             CTTTSC------HHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             ccccCC------HHHHHHHHHHhhcChhhCcCHHHHHh
Confidence            001111      24667888999999999999999976

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=1.8e-34  Score=320.90  Aligned_cols=246  Identities=19%  Similarity=0.287  Sum_probs=189.9

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEE--EEEEEecc-CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQF--VVKKIIDV-NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~v--avk~~~~~-~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|++|.||+|+...++..+  |+|++... .....+.+.+|+..+.++.+|||||++++++.+++..|+||||
T Consensus        28 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~  107 (327)
T 1fvr_A           28 KFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEY  107 (327)
T ss_dssp             EEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             cceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEEEec
Confidence            34456789999999999998888755  88888653 2334456788888887733899999999999999999999999


Q ss_pred             cCCCCHHHHHH-------------------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEE
Q 002105          763 IEGKELSEVLR-------------------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR  823 (966)
Q Consensus       763 ~~~g~L~~~l~-------------------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~  823 (966)
                      +++|+|.++++                   .+++..+..++.|+++||+|||   +.+|+||||||+||+++.+.  .++
T Consensus       108 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~--~~k  182 (327)
T 1fvr_A          108 APHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENY--VAK  182 (327)
T ss_dssp             CTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGG--CEE
T ss_pred             CCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCccceEEEcCCC--eEE
Confidence            99999999995                   3789999999999999999999   45999999999999998654  578


Q ss_pred             Eeccccceec-----CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhcc
Q 002105          824 LSVPGLAYCT-----DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSD  897 (966)
Q Consensus       824 ~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~  897 (966)
                      ++|||++...     .....+++.|+|||++.+..++.++|||||||++|||+| |+.||....  ..   +........
T Consensus       183 L~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~--~~---~~~~~~~~~  257 (327)
T 1fvr_A          183 IADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT--CA---ELYEKLPQG  257 (327)
T ss_dssp             ECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC--HH---HHHHHGGGT
T ss_pred             EcccCcCccccccccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCc--HH---HHHHHhhcC
Confidence            9999987532     122356788999999988889999999999999999998 999986532  11   111111111


Q ss_pred             CcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          898 CHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       898 ~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      .      .+......+      .++.+++.+|++.||++|||++|+++.|++++..
T Consensus       258 ~------~~~~~~~~~------~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  301 (327)
T 1fvr_A          258 Y------RLEKPLNCD------DEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE  301 (327)
T ss_dssp             C------CCCCCTTBC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             C------CCCCCCCCC------HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            0      011111111      2566788899999999999999999999986654

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=6.1e-34  Score=311.66  Aligned_cols=249  Identities=13%  Similarity=0.136  Sum_probs=188.1

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEE-ecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVC-RSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~-~~~~~~~lv~Ey~~  764 (966)
                      .....+|+|++|.||+|+...++..||||.+....  ..+.+..|+..+.+ ++|++++..++++ ..++..++||||+ 
T Consensus        12 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~-l~~~~~i~~~~~~~~~~~~~~lv~e~~-   87 (296)
T 4hgt_A           12 RLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKM-MQGGVGIPTIRWCGAEGDYNVMVMELL-   87 (296)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHH-HTTSTTCCCEEEEEEETTEEEEEEECC-
T ss_pred             EEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHH-hcCCCCCCeeeeecCCCCceEEEEEcc-
Confidence            44456789999999999998899999999865432  23467888888777 5777766666555 6678889999999 


Q ss_pred             CCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcC-CCCceEEEeccccceecC-----
Q 002105          765 GKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDG-KDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       765 ~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~-~~~~~~~~~~~~~~~~~~-----  834 (966)
                      +|+|.++++    .+++..+..++.|++.||+|||   +.+|+||||||+||+++. +....++++|||.+....     
T Consensus        88 ~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~  164 (296)
T 4hgt_A           88 GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTH  164 (296)
T ss_dssp             CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTC
T ss_pred             CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccC
Confidence            999999986    4899999999999999999999   458999999999999931 123457899999986422     


Q ss_pred             --------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc--hhhHHHHHHHhhccCcccccc
Q 002105          835 --------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV--HESIVEWARYCYSDCHLDTWV  904 (966)
Q Consensus       835 --------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  904 (966)
                              ....||+.|+|||.+.+..++.++|||||||++|||+||+.||......  ..............      .
T Consensus       165 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~------~  238 (296)
T 4hgt_A          165 QHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST------P  238 (296)
T ss_dssp             CBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHS------C
T ss_pred             ccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccc------h
Confidence                    1346899999999999999999999999999999999999999753221  12221111111110      0


Q ss_pred             cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          905 DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       905 d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      .+.....++      .++.+++..||+.||++|||++||++.|++++..
T Consensus       239 ~~~~~~~~~------~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~  281 (296)
T 4hgt_A          239 IEVLCKGYP------SEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR  281 (296)
T ss_dssp             HHHHTTTSC------HHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHH
T ss_pred             hhhhhccCC------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence            000111111      2567788899999999999999999999996654

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=6.2e-34  Score=311.68  Aligned_cols=250  Identities=13%  Similarity=0.136  Sum_probs=189.8

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEE-ecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVC-RSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~-~~~~~~~lv~Ey~~  764 (966)
                      .....+|+|++|.||+|+...++..||||++....  ..+++.+|+..+.+ ++|++++..++++ ..++..++||||+ 
T Consensus        12 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~-l~~~~~i~~~~~~~~~~~~~~lv~e~~-   87 (296)
T 3uzp_A           12 RLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKM-MQGGVGIPTIRWCGAEGDYNVMVMELL-   87 (296)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS--SCCHHHHHHHHHHH-HTTSTTCCCEEEEEEETTEEEEEEECC-
T ss_pred             EEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc--chhHHHHHHHHHHH-hhcCCCCCccccccCCCCceEEEEEec-
Confidence            34455788999999999998899999999876433  23467888888877 5777766655555 6677889999999 


Q ss_pred             CCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcC-CCCceEEEeccccceecC-----
Q 002105          765 GKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDG-KDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       765 ~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~-~~~~~~~~~~~~~~~~~~-----  834 (966)
                      +|+|.++++    .+++..+..++.|++.||+|||   +.+|+||||||+||+++. +....++++|||.+....     
T Consensus        88 ~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~  164 (296)
T 3uzp_A           88 GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTH  164 (296)
T ss_dssp             CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTC
T ss_pred             CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccc
Confidence            899999996    4899999999999999999999   458999999999999941 123457899999876421     


Q ss_pred             --------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc--hhhHHHHHHHhhccCcccccc
Q 002105          835 --------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV--HESIVEWARYCYSDCHLDTWV  904 (966)
Q Consensus       835 --------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  904 (966)
                              ....||+.|+|||.+.+..++.++|||||||++|||+||+.||......  .+............      .
T Consensus       165 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~------~  238 (296)
T 3uzp_A          165 QHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST------P  238 (296)
T ss_dssp             CBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHS------C
T ss_pred             cccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCC------c
Confidence                    2346899999999999999999999999999999999999999753221  11221111111110      0


Q ss_pred             cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 002105          905 DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS  954 (966)
Q Consensus       905 d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~  954 (966)
                      .+.+...++      .++.+++.+||+.||++|||++||++.|++++...
T Consensus       239 ~~~~~~~~~------~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~  282 (296)
T 3uzp_A          239 IEVLCKGYP------SEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ  282 (296)
T ss_dssp             HHHHTTTSC------HHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             hHHHHhhCC------HHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhc
Confidence            001111122      25667888999999999999999999999965543

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=1.7e-34  Score=312.70  Aligned_cols=238  Identities=20%  Similarity=0.327  Sum_probs=186.5

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ....+|+|++|.||+|+...++..||||++..... ...+.+.+|+..+.+ ++||||+++++++.+++..++||||+++
T Consensus        11 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~   89 (276)
T 2yex_A           11 LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKM-LNHENVVKFYGHRREGNIQYLFLEYCSG   89 (276)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHT-CCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred             EEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHh-cCCCCceeeeeEEEcCCEEEEEEEecCC
Confidence            34457889999999999988999999999864432 223456777777666 7999999999999999999999999999


Q ss_pred             CCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec--------C
Q 002105          766 KELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT--------D  834 (966)
Q Consensus       766 g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~--------~  834 (966)
                      |+|.++++   .+++.....++.|+++||+|||   +.+|+||||||+||+++.+.  .++++|||.+...        .
T Consensus        90 ~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~--~~kl~dfg~~~~~~~~~~~~~~  164 (276)
T 2yex_A           90 GELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLL  164 (276)
T ss_dssp             EEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTC--CEEECCCTTCEECEETTEECCB
T ss_pred             CcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCChHHEEEccCC--CEEEeeCCCccccCCCcchhcc
Confidence            99999986   4899999999999999999999   45899999999999999654  4789999987532        2


Q ss_pred             CCCcCCcccccccccCCCCC-CCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          835 SKSINSSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~-~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      ....|++.|+|||...+..+ +.++|||||||++|||+||+.||............|...   ...    ..+  ....+
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~---~~~----~~~--~~~~~  235 (276)
T 2yex_A          165 NKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEK---KTY----LNP--WKKID  235 (276)
T ss_dssp             CCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTT---CTT----STT--GGGSC
T ss_pred             cCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhc---ccc----cCc--hhhcC
Confidence            34568999999999987765 779999999999999999999997643322222222211   000    110  00111


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                            .++.+++.+|++.||++|||++||++
T Consensus       236 ------~~~~~li~~~l~~~p~~Rps~~~il~  261 (276)
T 2yex_A          236 ------SAPLALLHKILVENPSARITIPDIKK  261 (276)
T ss_dssp             ------HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ------HHHHHHHHHHCCCCchhCCCHHHHhc
Confidence                  24567888999999999999999876

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=2.4e-34  Score=337.33  Aligned_cols=236  Identities=17%  Similarity=0.211  Sum_probs=185.0

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|+||.||+|+...+|+.||+|++.....   ...+.+..|+..+.+ ++|||||++++++.+++..|+||||
T Consensus       188 ~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~-l~hp~Iv~l~~~~~~~~~l~lVmE~  266 (543)
T 3c4z_A          188 LDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAK-VHSRFIVSLAYAFETKTDLCLVMTI  266 (543)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHH-CCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             EEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHh-cCCCCEeeEEEEEeeCCEEEEEEEe
Confidence            334557999999999999988999999999865322   223456778877777 6999999999999999999999999


Q ss_pred             cCCCCHHHHHHc-------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-
Q 002105          763 IEGKELSEVLRN-------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       763 ~~~g~L~~~l~~-------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-  834 (966)
                      ++||+|.+++..       +++.....++.||+.||+|||   +.+|+||||||+|||++.++  .++++|||++.... 
T Consensus       267 ~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLKP~NILl~~~g--~vkL~DFGla~~~~~  341 (543)
T 3c4z_A          267 MNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDG--NVRISDLGLAVELKA  341 (543)
T ss_dssp             CTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTS--CEEECCCTTCEECCT
T ss_pred             ccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCChHHEEEeCCC--CEEEeecceeeeccC
Confidence            999999999863       789999999999999999999   45899999999999999654  58999999986532 


Q ss_pred             -----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccccc
Q 002105          835 -----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       835 -----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                           ...+||+.|||||++.+..|+.++|||||||++|||+||+.||........ ..+.........       +...
T Consensus       342 ~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~-~~~~~~~i~~~~-------~~~p  413 (543)
T 3c4z_A          342 GQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVE-NKELKQRVLEQA-------VTYP  413 (543)
T ss_dssp             TCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCC-HHHHHHHHHHCC-------CCCC
T ss_pred             CCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchh-HHHHHHHHhhcc-------cCCC
Confidence                 234799999999999999999999999999999999999999976432111 111111111110       0011


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHH
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCAS  941 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~  941 (966)
                      ...+      .++.+++.+|++.||++||++.
T Consensus       414 ~~~s------~~~~~li~~lL~~dP~~R~~~~  439 (543)
T 3c4z_A          414 DKFS------PASKDFCEALLQKDPEKRLGFR  439 (543)
T ss_dssp             TTSC------HHHHHHHHHHSCSSGGGSCCCB
T ss_pred             cccC------HHHHHHHHHhccCCHhHCCCCc
Confidence            1122      2456677899999999999863

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=321.50  Aligned_cols=245  Identities=17%  Similarity=0.268  Sum_probs=186.2

Q ss_pred             cccccccCCCCCccEEEEEEEecCCcEE----EEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEE
Q 002105          684 TEENLTSRGKKGVSSSYKVRSLANDMQF----VVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL  758 (966)
Q Consensus       684 ~~~~~~~~g~~g~~~vy~~~~~~~~~~v----avk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~l  758 (966)
                      ++.....+|+|++|.||+|+...++..+    |+|++.... ....+.+.+|+..+.+ ++|||||+++++|..++ .++
T Consensus        16 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~-~~~   93 (327)
T 3lzb_A           16 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMAS-VDNPHVCRLLGICLTST-VQL   93 (327)
T ss_dssp             TEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTT-CCBTTBCCCCEEEESSS-EEE
T ss_pred             HceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHh-CCCCCeeEEEEEEecCC-ceE
Confidence            3445567799999999999987777765    566554332 2234457778877777 69999999999998765 789


Q ss_pred             EEEccCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          759 VYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      ||||+++|+|.++++.    +++..+..++.|++.||+|||   +.+|+||||||+||+++.+  ..++++|||.+....
T Consensus        94 v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~--~~~kL~DfG~a~~~~  168 (327)
T 3lzb_A           94 ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTP--QHVKITDFGLAKLLG  168 (327)
T ss_dssp             EECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEET--TEEEECCTTC-----
T ss_pred             EEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCCHHHEEEcCC--CCEEEccCcceeEcc
Confidence            9999999999999963    889999999999999999999   4589999999999999865  468999999986421


Q ss_pred             --------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCccccccc
Q 002105          835 --------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVD  905 (966)
Q Consensus       835 --------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  905 (966)
                              ....+|+.|+|||++.+..++.++|||||||++|||+| |+.||.....  ..+.+....   ....     
T Consensus       169 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~--~~~~~~~~~---~~~~-----  238 (327)
T 3lzb_A          169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA--SEISSILEK---GERL-----  238 (327)
T ss_dssp             -----------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGHHHHHHT---TCCC-----
T ss_pred             CccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCH--HHHHHHHHc---CCCC-----
Confidence                    12345778999999999999999999999999999999 9999975422  222122211   1100     


Q ss_pred             ccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       906 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                       ......+      .++.+++.+||+.||++||++.|+++.|+++.+
T Consensus       239 -~~~~~~~------~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~  278 (327)
T 3lzb_A          239 -PQPPICT------IDVYMIMRKCWMIDADSRPKFRELIIEFSKMAR  278 (327)
T ss_dssp             -CCCTTBC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHT
T ss_pred             -CCCccCC------HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence             0111111      246678889999999999999999999998554

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=319.02  Aligned_cols=252  Identities=19%  Similarity=0.293  Sum_probs=184.2

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc--cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .....+|+|++|.||+|+...+|..||||++......  ..+.+.+|+..+.+ ++|||||++++++..++..++||||+
T Consensus         6 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (311)
T 4agu_A            6 EKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQ-LKHPNLVNLLEVFRRKRRLHLVFEYC   84 (311)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHH-CCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             eEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHh-CCCCCccchhheeecCCeEEEEEEeC
Confidence            3445678999999999999888999999998654322  23446778877777 69999999999999999999999999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      ++++|.++++   .+++.....++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||.+....      
T Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlkp~Nil~~~~~--~~kl~Dfg~~~~~~~~~~~~  159 (311)
T 4agu_A           85 DHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCH---KHNCIHRDVKPENILITKHS--VIKLCDFGFARLLTGPSDYY  159 (311)
T ss_dssp             SEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTS--CEEECCCTTCEECC------
T ss_pred             CCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCChhhEEEcCCC--CEEEeeCCCchhccCccccc
Confidence            9999999886   3899999999999999999999   45899999999999998654  57899999886532      


Q ss_pred             CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhcc------------Cccc
Q 002105          835 SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD------------CHLD  901 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~------------~~~~  901 (966)
                      ....+|+.|+|||++.+ ..++.++|||||||++|||+||+.||.+.... +.. .........            ....
T Consensus       160 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  237 (311)
T 4agu_A          160 DDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDV-DQL-YLIRKTLGDLIPRHQQVFSTNQYFS  237 (311)
T ss_dssp             ------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHH-HHHHHHHCSCCHHHHHHHHTCGGGT
T ss_pred             CCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHH-HHH-HHHHHHhcccccccccccccccccc
Confidence            23468899999998865 67899999999999999999999999764221 111 111111000            0000


Q ss_pred             --ccccccccCCCc-chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          902 --TWVDPFIRGHVS-SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       902 --~~~d~~~~~~~~-~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                        ...++....... .......++.+++.+|++.||++|||++|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  284 (311)
T 4agu_A          238 GVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH  284 (311)
T ss_dssp             TCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred             cCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence              001110000000 00011234677889999999999999999974

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=2.3e-34  Score=320.36  Aligned_cols=250  Identities=20%  Similarity=0.286  Sum_probs=189.4

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEec--CCeeEEEEEcc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS--EKAAYLVYEYI  763 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~--~~~~~lv~Ey~  763 (966)
                      .....+|+|++|.||+|+...++..||||++...   ..+.+.+|+..+.++-.||||+++++++..  ....++||||+
T Consensus        39 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~  115 (330)
T 3nsz_A           39 QLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHV  115 (330)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECC
T ss_pred             EEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEecc
Confidence            4455679999999999999899999999998532   235678888888884349999999999987  66789999999


Q ss_pred             CCCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----CCCc
Q 002105          764 EGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SKSI  838 (966)
Q Consensus       764 ~~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----~~~~  838 (966)
                      ++++|.++++.+++..+..++.|++.||+|||   +.+|+||||||+||+++.+. ..++++|||.+....     ....
T Consensus       116 ~~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~-~~~kl~Dfg~a~~~~~~~~~~~~~  191 (330)
T 3nsz_A          116 NNTDFKQLYQTLTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEH-RKLRLIDWGLAEFYHPGQEYNVRV  191 (330)
T ss_dssp             CCCCHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTT-TEEEECCCTTCEECCTTCCCCSCC
T ss_pred             CchhHHHHHHhCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEcCCC-CEEEEEeCCCceEcCCCCcccccc
Confidence            99999999999999999999999999999999   45899999999999998543 368999999986422     2346


Q ss_pred             CCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHh--------hccCc----------
Q 002105          839 NSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYC--------YSDCH----------  899 (966)
Q Consensus       839 ~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~--------~~~~~----------  899 (966)
                      +++.|+|||.+.+ ..++.++|||||||++|||+||+.||.......+.+.......        .....          
T Consensus       192 ~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (330)
T 3nsz_A          192 ASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDI  271 (330)
T ss_dssp             SCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHH
T ss_pred             ccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhh
Confidence            8899999999877 6789999999999999999999999865433222221111100        00000          


Q ss_pred             -----ccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          900 -----LDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       900 -----~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                           ...| .........  .....++.+++.+|++.||++|||++|+++
T Consensus       272 ~~~~~~~~~-~~~~~~~~~--~~~~~~~~~li~~~L~~dP~~Rpta~e~l~  319 (330)
T 3nsz_A          272 LGRHSRKRW-ERFVHSENQ--HLVSPEALDFLDKLLRYDHQSRLTAREAME  319 (330)
T ss_dssp             HCCCCCCCG-GGGCCTTTG--GGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             hhhccccch-hhhcccccc--ccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence                 0000 000000000  001235677888999999999999999986

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=1.6e-34  Score=315.73  Aligned_cols=240  Identities=17%  Similarity=0.223  Sum_probs=185.6

Q ss_pred             cCCCCCccEEEEEEE--ecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          690 SRGKKGVSSSYKVRS--LANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~--~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .+|+|++|.||+|..  ...+..||||++.....  ...+++.+|+..+.+ ++||||+++++++ ..+..++||||+++
T Consensus        24 ~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~-~~~~~~lv~e~~~~  101 (291)
T 1xbb_A           24 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQ-LDNPYIVRMIGIC-EAESWMLVMEMAEL  101 (291)
T ss_dssp             EEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHT-CCCTTBCCEEEEE-ESSSEEEEEECCTT
T ss_pred             ccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHh-CCCCCEEEEEEEE-CCCCcEEEEEeCCC
Confidence            468899999999954  45567899998864322  123457788888877 6999999999999 56678999999999


Q ss_pred             CCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--------
Q 002105          766 KELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--------  834 (966)
Q Consensus       766 g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--------  834 (966)
                      |+|.++++.   +++.....++.|+++||+|||.   .+|+||||||+||+++.+.  .++++|||.+....        
T Consensus       102 ~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nil~~~~~--~~kl~Dfg~~~~~~~~~~~~~~  176 (291)
T 1xbb_A          102 GPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQH--YAKISDFGLSKALRADENYYKA  176 (291)
T ss_dssp             EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETT--EEEECCCTTCEECCTTCSEEEC
T ss_pred             CCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHh---CCeEcCCCCcceEEEeCCC--cEEEccCCcceeeccCCCcccc
Confidence            999999963   8999999999999999999994   5899999999999998654  67899999876432        


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                       ....+++.|+|||.+.+..++.++||||||+++|||+| |+.||....  ...+.+.+..   . ..     +......
T Consensus       177 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~--~~~~~~~~~~---~-~~-----~~~~~~~  245 (291)
T 1xbb_A          177 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK--GSEVTAMLEK---G-ER-----MGCPAGC  245 (291)
T ss_dssp             ----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC--HHHHHHHHHT---T-CC-----CCCCTTC
T ss_pred             cccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHHHc---C-CC-----CCCCCCC
Confidence             12245688999999988889999999999999999999 999987532  1222122211   1 10     1111122


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      +      .++.+++.+||+.||++||++.||+++|++++..
T Consensus       246 ~------~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~  280 (291)
T 1xbb_A          246 P------REMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD  280 (291)
T ss_dssp             C------HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             C------HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence            2      2566788899999999999999999999996654

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=2.9e-34  Score=336.93  Aligned_cols=241  Identities=21%  Similarity=0.332  Sum_probs=188.4

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .....+|+|++|.||+|+...++..||||++...  .......+.+|+..+.+ ++|||||++++++..++..|+|||||
T Consensus        25 ~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~hpniv~~~~~~~~~~~~~lv~e~~  103 (486)
T 3mwu_A           25 NIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKK-LDHPNIMKLFEILEDSSSFYIVGELY  103 (486)
T ss_dssp             EEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHH-CCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             EEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHh-CCCCCcCeEEEEEEcCCEEEEEEEcC
Confidence            4455678999999999999889999999998643  22334567888888877 69999999999999999999999999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC-CCceEEEeccccceecC-----
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK-DEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~-~~~~~~~~~~~~~~~~~-----  834 (966)
                      ++|+|.+++.   .+++.....++.||+.||+|||   +.+|+||||||+||+++.. ....++++|||++....     
T Consensus       104 ~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~  180 (486)
T 3mwu_A          104 TGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKM  180 (486)
T ss_dssp             CSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC---
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCcc
Confidence            9999999885   4899999999999999999999   4589999999999999753 34568999999886422     


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ....||+.|+|||++.+ .|+.++||||+||++|||+||+.||.+.. ..+.. ..+..   . .... ..|.. ...+ 
T Consensus       181 ~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~-~~~~~-~~i~~---~-~~~~-~~~~~-~~~s-  250 (486)
T 3mwu_A          181 KDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKN-EYDIL-KRVET---G-KYAF-DLPQW-RTIS-  250 (486)
T ss_dssp             -CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHH-HHHHH---T-CCCS-CSGGG-GGSC-
T ss_pred             CCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCC-HHHHH-HHHHh---C-CCCC-CCccc-CCCC-
Confidence            23468999999999875 58999999999999999999999997542 11111 11111   1 0000 00111 1111 


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                           .++.+++.+|++.||++|||+.|+++
T Consensus       251 -----~~~~~li~~~L~~dp~~R~t~~~~l~  276 (486)
T 3mwu_A          251 -----DDAKDLIRKMLTFHPSLRITATQCLE  276 (486)
T ss_dssp             -----HHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             -----HHHHHHHHHHcCCChhhCcCHHHHhc
Confidence                 24667888999999999999999986

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=1.5e-34  Score=321.65  Aligned_cols=253  Identities=19%  Similarity=0.273  Sum_probs=183.4

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      +.....+|+|++|.||+|+...++..||||++.....  ...+.+.+|+..+.+ ++|||||++++++.+++..++||||
T Consensus        36 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~  114 (329)
T 3gbz_A           36 YRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKE-LQHRNIIELKSVIHHNHRLHLIFEY  114 (329)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGG-CCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             EEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHH-cCCCCcceEEEEEecCCEEEEEEec
Confidence            4556677999999999999988999999998854322  224457788888877 6999999999999999999999999


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC---CCceEEEeccccceecC--
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK---DEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~---~~~~~~~~~~~~~~~~~--  834 (966)
                      ++ |+|.+++.   .+++..+..++.||+.||+|||.   .+|+||||||+||+++.+   ....++++|||.+....  
T Consensus       115 ~~-~~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~  190 (329)
T 3gbz_A          115 AE-NDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHS---RRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIP  190 (329)
T ss_dssp             CS-EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC--
T ss_pred             CC-CCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHh---CCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCc
Confidence            99 59999986   38999999999999999999994   589999999999999642   34568999999875421  


Q ss_pred             ----CCCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhh-c-cCcc------c
Q 002105          835 ----SKSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCY-S-DCHL------D  901 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~-~-~~~~------~  901 (966)
                          ....+|+.|+|||++.+. .++.++|||||||++|||+||+.||..... .+.......... . ....      .
T Consensus       191 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (329)
T 3gbz_A          191 IRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSE-IDQLFKIFEVLGLPDDTTWPGVTALP  269 (329)
T ss_dssp             ---------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCTTTSTTGGGST
T ss_pred             ccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCH-HHHHHHHHHHhCCCchhhhhhhhhhh
Confidence                234679999999998774 489999999999999999999999976422 222212221110 0 0000      0


Q ss_pred             cccc--ccccCCCcchHH-----HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          902 TWVD--PFIRGHVSSIQN-----EIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       902 ~~~d--~~~~~~~~~~~~-----~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .|..  |....  .....     ...++.+++.+|++.||++|||++|+++
T Consensus       270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          270 DWKQSFPKFRG--KTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             TCCTTCCCCCC--CCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             hhhhhhhhhcc--ccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence            0000  00000  00000     1135678889999999999999999875

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=2.4e-34  Score=317.79  Aligned_cols=244  Identities=17%  Similarity=0.255  Sum_probs=182.1

Q ss_pred             ccccCCCCCccEEEEEEEec---CCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCC-----ee
Q 002105          687 NLTSRGKKGVSSSYKVRSLA---NDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK-----AA  756 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~---~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~-----~~  756 (966)
                      ....+|+|++|.||+|+...   ++..||+|++.....  ...+.+.+|+..+.+ ++|||||++++++.+.+     ..
T Consensus        38 ~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~~~~~  116 (313)
T 3brb_A           38 LGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKD-FSHPNVIRLLGVCIEMSSQGIPKP  116 (313)
T ss_dssp             EEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHT-CCCTTBCCCCEEEEC-------CE
T ss_pred             eccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhc-CCCCCeeeeeEEEeeccccCCccc
Confidence            34456899999999998765   345799998754322  223457788888877 69999999999998755     35


Q ss_pred             EEEEEccCCCCHHHHHH---------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecc
Q 002105          757 YLVYEYIEGKELSEVLR---------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP  827 (966)
Q Consensus       757 ~lv~Ey~~~g~L~~~l~---------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~  827 (966)
                      ++||||+++|+|.+++.         .+++..+..++.|+++||+|||   +.+|+||||||+||+++.+.  .++++||
T Consensus       117 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~--~~kl~Df  191 (313)
T 3brb_A          117 MVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS---NRNFLHRDLAARNCMLRDDM--TVCVADF  191 (313)
T ss_dssp             EEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCSGGGEEECTTS--CEEECSC
T ss_pred             EEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCC--cEEEeec
Confidence            99999999999999983         3899999999999999999999   56999999999999998654  5789999


Q ss_pred             ccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccC
Q 002105          828 GLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDC  898 (966)
Q Consensus       828 ~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~  898 (966)
                      |.+....        ....+++.|+|||.+.+..++.++|||||||++|||+| |+.||.....  ....+...   ...
T Consensus       192 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--~~~~~~~~---~~~  266 (313)
T 3brb_A          192 GLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQN--HEMYDYLL---HGH  266 (313)
T ss_dssp             SCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG--GGHHHHHH---TTC
T ss_pred             CcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCH--HHHHHHHH---cCC
Confidence            9875421        22346778999999999999999999999999999999 8889865421  11212211   111


Q ss_pred             cccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          899 HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       899 ~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      .      +.....++      .++.+++.+||+.||++|||+.|+++.|++.+..
T Consensus       267 ~------~~~~~~~~------~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~  309 (313)
T 3brb_A          267 R------LKQPEDCL------DELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLES  309 (313)
T ss_dssp             C------CCCBTTCC------HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             C------CCCCcccc------HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            0      11111122      2566788899999999999999999999985543

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=2.1e-34  Score=316.42  Aligned_cols=239  Identities=20%  Similarity=0.307  Sum_probs=182.8

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .....+|+|++|.||+|+...++..||+|++........+.+.+|+..+.+ ++|||||++++++..++..++||||+++
T Consensus        22 ~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~  100 (302)
T 2j7t_A           22 EIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILAT-CDHPYIVKLLGAYYHDGKLWIMIEFCPG  100 (302)
T ss_dssp             EEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHH-CCCTTBCCEEEEEECC-CEEEEEECCTT
T ss_pred             eecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhc-CCCCCEeeeeeeeeeCCeEEEEEEeCCC
Confidence            344567899999999999988899999998866554455678888888877 6999999999999999999999999999


Q ss_pred             CCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee------cCC
Q 002105          766 KELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC------TDS  835 (966)
Q Consensus       766 g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~------~~~  835 (966)
                      |+|.+++.    .+++..+..++.|++.||+|||.   .+|+||||||+||+++.+.  .++++|||.+..      ...
T Consensus       101 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~--~~kl~Dfg~~~~~~~~~~~~~  175 (302)
T 2j7t_A          101 GAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHS---KRIIHRDLKAGNVLMTLEG--DIRLADFGVSAKNLKTLQKRD  175 (302)
T ss_dssp             EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTS--CEEECCCHHHHHHHHHHHC--
T ss_pred             CcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHHHEEECCCC--CEEEEECCCCccccccccccc
Confidence            99999885    38999999999999999999994   5899999999999998654  578999997632      123


Q ss_pred             CCcCCccccccccc-----CCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          836 KSINSSAYVAPETK-----ESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       836 ~~~~~~~y~aPE~~-----~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                      ...||+.|+|||++     ....++.++|||||||++|||+||+.||.... ..........    ... .....   ..
T Consensus       176 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-~~~~~~~~~~----~~~-~~~~~---~~  246 (302)
T 2j7t_A          176 SFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELN-PMRVLLKIAK----SDP-PTLLT---PS  246 (302)
T ss_dssp             ---CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSC-HHHHHHHHHH----SCC-CCCSS---GG
T ss_pred             cccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCC-HHHHHHHHhc----cCC-cccCC---cc
Confidence            45689999999987     46778999999999999999999999987532 1111111111    100 00000   11


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .++      .++.+++.+|++.||++|||+.|+++
T Consensus       247 ~~~------~~l~~li~~~l~~dp~~Rps~~~ll~  275 (302)
T 2j7t_A          247 KWS------VEFRDFLKIALDKNPETRPSAAQLLE  275 (302)
T ss_dssp             GSC------HHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred             ccC------HHHHHHHHHHcccChhhCCCHHHHhc
Confidence            111      24667888999999999999999875

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=319.21  Aligned_cols=250  Identities=22%  Similarity=0.328  Sum_probs=182.2

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ....+|+|++|.||+|+...++..||||++..... .....+.+|+..+.+ ++|||||++++++..++..++||||++ 
T Consensus         6 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~-   83 (324)
T 3mtl_A            6 KLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKD-LKHANIVTLHDIIHTEKSLTLVFEYLD-   83 (324)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSC-CCCTTBCCEEEEEECSSCEEEEEECCS-
T ss_pred             EEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHh-cCCCCCCeeeeEEeeCCEEEEEecccc-
Confidence            34567899999999999988999999999864332 233456678888777 699999999999999999999999998 


Q ss_pred             CCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------C
Q 002105          766 KELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------S  835 (966)
Q Consensus       766 g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~  835 (966)
                      |+|.+++..    +++.....++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||.+....      .
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~--~~kl~Dfg~a~~~~~~~~~~~  158 (324)
T 3mtl_A           84 KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERG--ELKLADFGLARAKSIPTKTYD  158 (324)
T ss_dssp             EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCCGGGEEECTTC--CEEECSSSEEECC--------
T ss_pred             cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcCHHHEEECCCC--CEEEccCcccccccCCccccc
Confidence            599998863    889999999999999999999   45899999999999999664  57899999876422      2


Q ss_pred             CCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccc---------
Q 002105          836 KSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVD---------  905 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---------  905 (966)
                      ...+|+.|+|||++.+ ..++.++|||||||++|||+||+.||.+... .+.. ..+...........|..         
T Consensus       159 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~-~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~  236 (324)
T 3mtl_A          159 NEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTV-EEQL-HFIFRILGTPTEETWPGILSNEEFKT  236 (324)
T ss_dssp             ----CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHH-HHHHHHHCCCCTTTSTTGGGCHHHHH
T ss_pred             cccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHH-HHHHHHhCCCChHhchhhhcchhhcc
Confidence            3367999999999876 5689999999999999999999999976421 1222 22222111111111000         


Q ss_pred             ---ccccCCC--cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          906 ---PFIRGHV--SSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       906 ---~~~~~~~--~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         +......  ........++.+++.+|++.||++|||++|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  281 (324)
T 3mtl_A          237 YNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK  281 (324)
T ss_dssp             TCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             cccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence               0000000  000001134667889999999999999999975

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=8.3e-35  Score=331.59  Aligned_cols=190  Identities=26%  Similarity=0.402  Sum_probs=152.3

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEecCC--eeEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK--AAYLVY  760 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~--~~~lv~  760 (966)
                      +.....+|+|++|.||+|++..+|..||||++...  .....+.+.+|+..+.++..|||||++++++..++  ..|+||
T Consensus        11 y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~lv~   90 (388)
T 3oz6_A           11 YELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYLVF   90 (388)
T ss_dssp             EEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEEEE
T ss_pred             eEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEEEe
Confidence            34556689999999999999899999999998543  22234456788888888534999999999997544  689999


Q ss_pred             EccCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          761 EYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       761 Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      |||+ |+|.++++  .+++..+..++.|+++||+|||   +.+|+||||||+|||++.+.  .++++|||++....    
T Consensus        91 e~~~-~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~--~~kl~DFG~a~~~~~~~~  164 (388)
T 3oz6_A           91 DYME-TDLHAVIRANILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMKPSNILLNAEC--HVKVADFGLSRSFVNIRR  164 (388)
T ss_dssp             ECCS-EEHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTC--CEEECCCTTCEESSSCCC
T ss_pred             cccC-cCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHeEEcCCC--CEEecCCccccccccccc
Confidence            9998 69999987  4899999999999999999999   45899999999999999654  57999999885421    


Q ss_pred             -----------------------CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          835 -----------------------SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       835 -----------------------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                                             ...+||+.|+|||++.+ ..++.++||||+||++|||+||+.||.+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  234 (388)
T 3oz6_A          165 VTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGS  234 (388)
T ss_dssp             CCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCC
Confidence                                   22468999999999876 67899999999999999999999999764

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=4.1e-34  Score=311.19  Aligned_cols=236  Identities=22%  Similarity=0.295  Sum_probs=187.6

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|++|.||+|+...++..||+|++....   ....+.+.+|+..+.+ ++||||+++++++.+++..++||||
T Consensus        17 ~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~   95 (284)
T 2vgo_A           17 DIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSH-LRHPNILRMYNYFHDRKRIYLMLEF   95 (284)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHT-CCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             eeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhc-CCCCCEeeEEEEEEcCCEEEEEEEe
Confidence            34455788999999999998889999999986432   1223456777777777 6999999999999999999999999


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----C
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----S  835 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----~  835 (966)
                      +++|+|.+++.   .+++.....++.|+++||+|||   +.+|+||||||+||+++.+.  .++++|||.+....    .
T Consensus        96 ~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~--~~kl~Dfg~~~~~~~~~~~  170 (284)
T 2vgo_A           96 APRGELYKELQKHGRFDEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKG--ELKIADFGWSVHAPSLRRR  170 (284)
T ss_dssp             CTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTC--CEEECCCTTCEECSSSCBC
T ss_pred             CCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEEcCCC--CEEEecccccccCcccccc
Confidence            99999999986   3899999999999999999999   56999999999999998654  57899999875432    3


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...|++.|+|||.+.+..++.++||||||+++|||++|+.||..... .+.    ......       .+.......+  
T Consensus       171 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-~~~----~~~~~~-------~~~~~~~~~~--  236 (284)
T 2vgo_A          171 TMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSH-TET----HRRIVN-------VDLKFPPFLS--  236 (284)
T ss_dssp             CCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH-HHH----HHHHHT-------TCCCCCTTSC--
T ss_pred             cccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCH-hHH----HHHHhc-------cccCCCCcCC--
Confidence            34689999999999999999999999999999999999999875321 111    111111       0111111222  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                          .++.+++.+|++.||++|||++|+++
T Consensus       237 ----~~~~~li~~~l~~~p~~Rps~~~ll~  262 (284)
T 2vgo_A          237 ----DGSKDLISKLLRYHPPQRLPLKGVME  262 (284)
T ss_dssp             ----HHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ----HHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence                24567888999999999999999985

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=1.8e-34  Score=314.96  Aligned_cols=244  Identities=20%  Similarity=0.298  Sum_probs=180.0

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .....+|+|++|.||+++.   ...||||++.....  ...+.|.+|+..+.+ ++|||||++++++ ..+..++||||+
T Consensus        27 ~~~~~lG~G~~g~Vy~~~~---~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~-~~~~~~lv~e~~  101 (289)
T 3og7_A           27 TVGQRIGSGSFGTVYKGKW---HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK-TRHVNILLFMGYS-TAPQLAIVTQWC  101 (289)
T ss_dssp             EEEEEEEECSSEEEEEEES---SSEEEEEEESCSSCCHHHHHHHHHHHHHHTT-CCCTTBCCEEEEE-CSSSCEEEEECC
T ss_pred             eeeeEecCCCCeEEEEEEE---cCceEEEEEeccCCCHHHHHHHHHHHHHHHh-CCCCcEEEEEeec-cCCccEEEEEec
Confidence            3345678999999999975   23589998854322  223457788888777 7999999999976 456689999999


Q ss_pred             CCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          764 EGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       764 ~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      ++|+|.++++    .+++.++..++.|++.||+|||   +.+|+||||||+||+++.+  ..++++|||.+....     
T Consensus       102 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~~~~~  176 (289)
T 3og7_A          102 EGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHED--NTVKIGDFGLATEKSRWSGS  176 (289)
T ss_dssp             CEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETT--TEEEECCCC-----------
T ss_pred             CCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCC--CCEEEccceecccccccccc
Confidence            9999999995    4899999999999999999999   4589999999999999865  468899999875321     


Q ss_pred             ---CCCcCCcccccccccC---CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccc
Q 002105          835 ---SKSINSSAYVAPETKE---SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI  908 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~---~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  908 (966)
                         ....||+.|+|||.+.   +..++.++|||||||++|||+||+.||..... .+.+.+.+........    . +..
T Consensus       177 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~-~~~~~~~~~~~~~~~~----~-~~~  250 (289)
T 3og7_A          177 HQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINN-RDQIIEMVGRGSLSPD----L-SKV  250 (289)
T ss_dssp             -------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCC-HHHHHHHHHHTSCCCC----T-TSS
T ss_pred             ccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccch-HHHHHHHhcccccCcc----h-hhc
Confidence               2246899999999886   66788899999999999999999999975422 2222222221110000    0 001


Q ss_pred             cCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 002105          909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCF  951 (966)
Q Consensus       909 ~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~  951 (966)
                      ...++      .++.+++.+|++.||++|||++|++++|+++.
T Consensus       251 ~~~~~------~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~  287 (289)
T 3og7_A          251 RSNCP------KRMKRLMAECLKKKRDERPSFPRILAEIEELA  287 (289)
T ss_dssp             CTTSC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             cccCC------HHHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence            11122      35677888999999999999999999999844

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=3.8e-34  Score=346.94  Aligned_cols=235  Identities=18%  Similarity=0.251  Sum_probs=188.0

Q ss_pred             ccccccccCCCCCccEEEEEEEecCCcEEEEEEEecc---CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          683 TTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV---NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       683 ~~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~---~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      .++..+..+|+|+||.||+|+...++..||||++...   .....+.+..|...+.+..+||||+++++++.+.+..|+|
T Consensus       341 ~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~lV  420 (674)
T 3pfq_A          341 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFV  420 (674)
T ss_dssp             TTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEEE
T ss_pred             cceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEEE
Confidence            3455667789999999999999889999999998643   2223344667777777655899999999999999999999


Q ss_pred             EEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec---
Q 002105          760 YEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT---  833 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~---  833 (966)
                      |||++||+|.++++   .+++..+..++.||+.||+|||   +.+||||||||+|||+|.++  +++++|||++...   
T Consensus       421 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLKp~NILl~~~g--~ikL~DFGla~~~~~~  495 (674)
T 3pfq_A          421 MEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEG--HIKIADFGMCKENIWD  495 (674)
T ss_dssp             EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTSEECCCCCSTTEEECSSS--CEEECCCTTCEECCCT
T ss_pred             EeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEeccCChhhEEEcCCC--cEEEeecceeeccccC
Confidence            99999999999996   4899999999999999999999   45999999999999999654  6899999998642   


Q ss_pred             ---CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          834 ---DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       834 ---~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                         ....+||+.|||||++.+..|+.++|||||||++|||+||+.||.+..  ...+   ....... .      +....
T Consensus       496 ~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~--~~~~---~~~i~~~-~------~~~p~  563 (674)
T 3pfq_A          496 GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED--EDEL---FQSIMEH-N------VAYPK  563 (674)
T ss_dssp             TCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHH---HHHHHSS-C------CCCCT
T ss_pred             CcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCC--HHHH---HHHHHhC-C------CCCCc
Confidence               234578999999999999999999999999999999999999997642  1111   1111111 0      01111


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCA  940 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~  940 (966)
                      ..+      .++.+++..|++.||++||++
T Consensus       564 ~~s------~~~~~li~~lL~~dP~~R~~~  587 (674)
T 3pfq_A          564 SMS------KEAVAICKGLMTKHPGKRLGC  587 (674)
T ss_dssp             TSC------HHHHHHHHHHSCSSSTTCTTC
T ss_pred             cCC------HHHHHHHHHHccCCHHHCCCC
Confidence            222      246677889999999999997

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=8.6e-35  Score=315.64  Aligned_cols=244  Identities=23%  Similarity=0.301  Sum_probs=186.3

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEe--cCCeeEEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCR--SEKAAYLVYE  761 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~--~~~~~~lv~E  761 (966)
                      .....+|+|++|.||+++...++..||+|++....  ....+.+.+|+..+.+ ++|||||++++++.  .++..++|||
T Consensus         9 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~~~lv~e   87 (279)
T 2w5a_A            9 EVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRE-LKHPNIVRYYDRIIDRTNTTLYIVME   87 (279)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHH-CCCTTBCCEEEEEEEGGGTEEEEEEE
T ss_pred             eeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHh-cCCCCCCeEEEEEecCCCceEEEEEe
Confidence            34456788999999999998899999999986432  2223457788888777 69999999999885  4678999999


Q ss_pred             ccCCCCHHHHHHc-------CCHHHHHHHHHHHHHHHHHHhhcC--CCCeEeecCCCCcEEEcCCCCceEEEecccccee
Q 002105          762 YIEGKELSEVLRN-------LSWERRRKVAIGIAKALRFLHFHC--SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC  832 (966)
Q Consensus       762 y~~~g~L~~~l~~-------l~~~~~~~i~~~ia~~l~yLH~~~--~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~  832 (966)
                      |+++|+|.+++..       +++..+..++.|++.||+|||...  ..+|+||||||+||+++.+.  .++++|||.+..
T Consensus        88 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~--~~kl~dfg~~~~  165 (279)
T 2w5a_A           88 YCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQ--NVKLGDFGLARI  165 (279)
T ss_dssp             CCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSS--CEEECCCCHHHH
T ss_pred             CCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCC--CEEEecCchhee
Confidence            9999999999963       899999999999999999999652  12399999999999998654  578999998754


Q ss_pred             cCC------CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccc
Q 002105          833 TDS------KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDP  906 (966)
Q Consensus       833 ~~~------~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  906 (966)
                      ...      ...|++.|+|||.+.+..++.++||||||+++|||+||+.||....  ...+.+....    ....     
T Consensus       166 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~~i~~----~~~~-----  234 (279)
T 2w5a_A          166 LNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFS--QKELAGKIRE----GKFR-----  234 (279)
T ss_dssp             C---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHH----TCCC-----
T ss_pred             eccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccC--HHHHHHHHhh----cccc-----
Confidence            322      1257899999999998899999999999999999999999987532  1111121111    1111     


Q ss_pred             cccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          907 FIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       907 ~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      .+...++      .++.+++.+||+.||++||++.||++.+..
T Consensus       235 ~~~~~~~------~~l~~li~~~l~~~p~~Rps~~~ll~~~~~  271 (279)
T 2w5a_A          235 RIPYRYS------DELNEIITRMLNLKDYHRPSVEEILENPLI  271 (279)
T ss_dssp             CCCTTSC------HHHHHHHHHHTCSSGGGSCCHHHHHTSTTC
T ss_pred             cCCcccC------HHHHHHHHHHcCCCcccCCCHHHHHhChhh
Confidence            1111222      246677889999999999999999987654

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=8.1e-35  Score=319.76  Aligned_cols=247  Identities=17%  Similarity=0.261  Sum_probs=170.8

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      +.....+|+|++|.||+|+...++..||||++.... ....+++.+|+..+.+ ++|||||++++++..++..++||||+
T Consensus        17 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~   95 (303)
T 2vwi_A           17 YELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQ-CHHPNIVSYYTSFVVKDELWLVMKLL   95 (303)
T ss_dssp             CEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCC-CCCTTBCCEEEEEESSSCEEEEEECC
T ss_pred             hhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhh-cCCCCEeeEEEEEeecCCcEEEehhc
Confidence            344556799999999999988889999999875432 2334567778777777 69999999999999999999999999


Q ss_pred             CCCCHHHHHHc-----------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee
Q 002105          764 EGKELSEVLRN-----------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC  832 (966)
Q Consensus       764 ~~g~L~~~l~~-----------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~  832 (966)
                      ++|+|.++++.           +++..+..++.|++.||+|||.   .+|+||||||+||+++.+.  .++++|||.+..
T Consensus        96 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~--~~kl~dfg~~~~  170 (303)
T 2vwi_A           96 SGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHK---NGQIHRDVKAGNILLGEDG--SVQIADFGVSAF  170 (303)
T ss_dssp             TTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTC--CEEECCCHHHHH
T ss_pred             cCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCCCCCCCChhhEEEcCCC--CEEEEeccchhe
Confidence            99999999863           8899999999999999999994   5899999999999998654  478999998643


Q ss_pred             cC-----------CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcc
Q 002105          833 TD-----------SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHL  900 (966)
Q Consensus       833 ~~-----------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  900 (966)
                      ..           ....||+.|+|||.+.+ ..++.++|||||||++|||+||+.||..... .... ............
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-~~~~-~~~~~~~~~~~~  248 (303)
T 2vwi_A          171 LATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPP-MKVL-MLTLQNDPPSLE  248 (303)
T ss_dssp             CC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCG-GGHH-HHHHTSSCCCTT
T ss_pred             eccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCch-hhHH-HHHhccCCCccc
Confidence            21           22368899999998865 5689999999999999999999999975422 1111 111100000000


Q ss_pred             cccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          901 DTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       901 ~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ....++.....++      .++.+++.+||+.||++|||+.|+++
T Consensus       249 ~~~~~~~~~~~~~------~~~~~li~~~l~~dp~~Rps~~~ll~  287 (303)
T 2vwi_A          249 TGVQDKEMLKKYG------KSFRKMISLCLQKDPEKRPTAAELLR  287 (303)
T ss_dssp             C-----CCCCCCC------HHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             cccccchhhhhhh------HHHHHHHHHHccCChhhCcCHHHHhh
Confidence            0111111112222      24667888999999999999999975

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=1.7e-34  Score=316.46  Aligned_cols=243  Identities=21%  Similarity=0.337  Sum_probs=182.7

Q ss_pred             cccCCCCCccEEEEEEEecCC---cEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEe-cCCeeEEEEEc
Q 002105          688 LTSRGKKGVSSSYKVRSLAND---MQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCR-SEKAAYLVYEY  762 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~---~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~-~~~~~~lv~Ey  762 (966)
                      ...+|+|++|.||+|+...++   ..+|+|++..... ...+.+.+|+..+.+ ++|||||+++++|. .++..++||||
T Consensus        30 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~~v~e~  108 (298)
T 3f66_A           30 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD-FSHPNVLSLLGICLRSEGSPLVVLPY  108 (298)
T ss_dssp             EEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHT-CCCTTBCCCCEEECCSSSCCEEEEEC
T ss_pred             cceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHh-CCCCCEeeeeeEEEcCCCceEEEEeC
Confidence            345789999999999864433   3578888764332 223457788887777 69999999999975 45678999999


Q ss_pred             cCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-----
Q 002105          763 IEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-----  833 (966)
Q Consensus       763 ~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-----  833 (966)
                      +++|+|.++++.    +++..+..++.|+++||+|||   +.+|+||||||+||+++.+.  .++++|||.+...     
T Consensus       109 ~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~dikp~Nil~~~~~--~~kl~Dfg~a~~~~~~~~  183 (298)
T 3f66_A          109 MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDEKF--TVKVADFGLARDMYDKEY  183 (298)
T ss_dssp             CTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTC--CEEECSCGGGCCCSCGGG
T ss_pred             CCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEECCCC--CEEECcccccccccccch
Confidence            999999999964    789999999999999999999   45899999999999998654  5789999988532     


Q ss_pred             -----CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcC-CCCCCCCCCchhhHHHHHHHhhccCccccccccc
Q 002105          834 -----DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTG-KSPADADFGVHESIVEWARYCYSDCHLDTWVDPF  907 (966)
Q Consensus       834 -----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  907 (966)
                           .....+|+.|+|||.+.+..++.++||||||+++|||+|| .+|+... ...+.. ....   ....      +.
T Consensus       184 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~-~~~~~~-~~~~---~~~~------~~  252 (298)
T 3f66_A          184 YSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV-NTFDIT-VYLL---QGRR------LL  252 (298)
T ss_dssp             CBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTS-CTTTHH-HHHH---TTCC------CC
T ss_pred             hccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccC-CHHHHH-HHHh---cCCC------CC
Confidence                 1223567789999999988999999999999999999995 5555432 222221 1111   1110      00


Q ss_pred             ccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       908 ~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      .....+      .++.+++.+|++.||++|||++|++++|++++..
T Consensus       253 ~~~~~~------~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~  292 (298)
T 3f66_A          253 QPEYCP------DPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  292 (298)
T ss_dssp             CCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             CCccCC------HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            111122      2466788899999999999999999999996553

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=4.4e-34  Score=312.68  Aligned_cols=237  Identities=21%  Similarity=0.294  Sum_probs=187.5

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|++|.||+++...++..||+|.+.....   ...+.+.+|+..+.+ ++|||||++++++.+++..++||||
T Consensus        18 ~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~   96 (294)
T 2rku_A           18 VRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRS-LAHQHVVGFHGFFEDNDFVFVVLEL   96 (294)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHT-CCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             EEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHh-CCCCCEeeeeeeeccCCEEEEEEec
Confidence            344567899999999999988899999998865422   223456777777777 6999999999999999999999999


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      +++++|.+++.   .+++.++..++.|+++||+|||.   .+|+||||||+||+++.+.  .++++|||.+....     
T Consensus        97 ~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~--~~kl~dfg~~~~~~~~~~~  171 (294)
T 2rku_A           97 CRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDL--EVKIGDFGLATKVEYDGER  171 (294)
T ss_dssp             CTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTC--CEEECCCTTCEECCSTTCC
T ss_pred             CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEcCCC--CEEEEeccCceecccCccc
Confidence            99999999886   48999999999999999999994   5899999999999999654  57899999876432     


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                       ....||+.|+|||.+.+..++.++||||||+++|||+||+.||..... .+..   .. ... ...      .+....+
T Consensus       172 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~-~~~~---~~-~~~-~~~------~~~~~~~  239 (294)
T 2rku_A          172 KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL-KETY---LR-IKK-NEY------SIPKHIN  239 (294)
T ss_dssp             BCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH-HHHH---HH-HHT-TCC------CCCTTSC
T ss_pred             cccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-HHHH---HH-Hhh-ccC------CCccccC
Confidence             234688999999999999999999999999999999999999975321 1111   11 111 000      1111121


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                            .++.+++.+|++.||++|||++|+++.
T Consensus       240 ------~~~~~li~~~l~~~p~~Rps~~~ll~~  266 (294)
T 2rku_A          240 ------PVAASLIQKMLQTDPTARPTINELLND  266 (294)
T ss_dssp             ------HHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             ------HHHHHHHHHHcccChhhCcCHHHHhhC
Confidence                  245677889999999999999999863

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3e-34  Score=312.86  Aligned_cols=240  Identities=18%  Similarity=0.279  Sum_probs=187.8

Q ss_pred             cCCCCCccEEEEEEEe--cCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          690 SRGKKGVSSSYKVRSL--ANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~--~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      .+|+|++|.||+|...  .++..||||++..... ...+.+.+|+..+.+ ++|||||++++++ ..+..++||||+++|
T Consensus        17 ~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~-~~~~~~lv~e~~~~~   94 (287)
T 1u59_A           17 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQ-LDNPYIVRLIGVC-QAEALMLVMEMAGGG   94 (287)
T ss_dssp             EEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHH-CCCTTBCCEEEEE-ESSSEEEEEECCTTE
T ss_pred             cccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHh-CCCCCEeEEEEEe-cCCCcEEEEEeCCCC
Confidence            4789999999999853  4677899999865422 234557788888877 6999999999999 456789999999999


Q ss_pred             CHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--------
Q 002105          767 ELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--------  834 (966)
Q Consensus       767 ~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--------  834 (966)
                      +|.+++.    .+++..+..++.|+++||+|||   ..+|+||||||+||+++.+  ..++++|||.+....        
T Consensus        95 ~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~--~~~kl~Dfg~~~~~~~~~~~~~~  169 (287)
T 1u59_A           95 PLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNR--HYAKISDFGLSKALGADDSYYTA  169 (287)
T ss_dssp             EHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEET--TEEEECCCTTCEECTTCSCEECC
T ss_pred             CHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCchheEEEcCC--CCEEECcccceeeeccCcceeec
Confidence            9999994    3899999999999999999999   4589999999999999865  468899999876431        


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                       ....+|+.|+|||++.+..++.++|||||||++|||+| |+.||.....  ..+.+.+..   ...      +......
T Consensus       170 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~i~~---~~~------~~~~~~~  238 (287)
T 1u59_A          170 RSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG--PEVMAFIEQ---GKR------MECPPEC  238 (287)
T ss_dssp             CCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT--HHHHHHHHT---TCC------CCCCTTC
T ss_pred             cccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCH--HHHHHHHhc---CCc------CCCCCCc
Confidence             12345788999999988889999999999999999999 9999875422  112122211   110      1111122


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      +      .++.+++..||+.||++||++.||++.|++++..
T Consensus       239 ~------~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  273 (287)
T 1u59_A          239 P------PELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS  273 (287)
T ss_dssp             C------HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             C------HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            2      2566788899999999999999999999986554

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=1.5e-34  Score=320.66  Aligned_cols=245  Identities=16%  Similarity=0.276  Sum_probs=189.8

Q ss_pred             cccccCCCCCccEEEEEEEe-----cCCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSL-----ANDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~-----~~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      .....+|+|++|.||+|+..     .++..||||++...... ....+.+|+..+.+ ++||||+++++++.+++..++|
T Consensus        28 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~lv  106 (322)
T 1p4o_A           28 TMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE-FNCHHVVRLLGVVSQGQPTLVI  106 (322)
T ss_dssp             EEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGG-CCCTTBCCEEEEECSSSSCEEE
T ss_pred             eeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHh-cCCCCEeeeEEEEccCCccEEE
Confidence            34456789999999999875     35678999988643322 23357778877777 6999999999999999999999


Q ss_pred             EEccCCCCHHHHHHc-------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEec
Q 002105          760 YEYIEGKELSEVLRN-------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSV  826 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~-------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~  826 (966)
                      |||+++|+|.++++.             +++..+..++.|++.||+|||.   .+|+||||||+||+++.+.  .++++|
T Consensus       107 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~NIli~~~~--~~kl~D  181 (322)
T 1p4o_A          107 MELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDF--TVKIGD  181 (322)
T ss_dssp             EECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCSGGGEEECTTC--CEEECC
T ss_pred             EEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCCccCCCccceEEEcCCC--eEEECc
Confidence            999999999999853             4889999999999999999994   5899999999999999654  578999


Q ss_pred             cccceec--------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhcc
Q 002105          827 PGLAYCT--------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSD  897 (966)
Q Consensus       827 ~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~  897 (966)
                      ||.+...        .....+|+.|+|||++.+..++.++|||||||++|||+| |+.||....  .....+.+   ...
T Consensus       182 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~--~~~~~~~~---~~~  256 (322)
T 1p4o_A          182 FGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS--NEQVLRFV---MEG  256 (322)
T ss_dssp             TTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC--HHHHHHHH---HTT
T ss_pred             CccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCC--HHHHHHHH---HcC
Confidence            9987532        123356788999999988889999999999999999999 888986531  11111211   111


Q ss_pred             CcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          898 CHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       898 ~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      ...      ......+      .++.+++.+|++.||++|||+.|+++.|++.+.+
T Consensus       257 ~~~------~~~~~~~------~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~  300 (322)
T 1p4o_A          257 GLL------DKPDNCP------DMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEP  300 (322)
T ss_dssp             CCC------CCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCT
T ss_pred             CcC------CCCCCCC------HHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhcc
Confidence            110      0111121      2466788899999999999999999999985443

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.2e-34  Score=320.07  Aligned_cols=248  Identities=19%  Similarity=0.250  Sum_probs=188.9

Q ss_pred             cccccCCCCCccEEEEEEE----ecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCC--eeEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRS----LANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK--AAYLV  759 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~----~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~--~~~lv  759 (966)
                      .....+|+|++|.||+++.    ..++..||||++........+.+.+|+..+.+ ++|||||++++++...+  ..++|
T Consensus        44 ~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~~lv  122 (326)
T 2w1i_A           44 KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKS-LQHDNIVKYKGVCYSAGRRNLKLI  122 (326)
T ss_dssp             EEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHT-CCCTTBCCEEEEECC----CCEEE
T ss_pred             eeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHh-CCCCCeeeEEEEEEecCCCceEEE
Confidence            4456679999999999983    46788999999876544445568888888887 69999999999987654  78999


Q ss_pred             EEccCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-
Q 002105          760 YEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-  834 (966)
                      |||+++|+|.++++.    +++.++..++.|+++||+|||   ..+|+||||||+||+++.+  ..++++|||.+.... 
T Consensus       123 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~--~~~kL~Dfg~~~~~~~  197 (326)
T 2w1i_A          123 MEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENE--NRVKIGDFGLTKVLPQ  197 (326)
T ss_dssp             ECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEET--TEEEECCCTTCEECCS
T ss_pred             EECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEEcCC--CcEEEecCcchhhccc
Confidence            999999999999963    899999999999999999999   4599999999999999865  468899999886432 


Q ss_pred             --------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc----------hhhHHHHHHHhhc
Q 002105          835 --------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV----------HESIVEWARYCYS  896 (966)
Q Consensus       835 --------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~----------~~~~~~~~~~~~~  896 (966)
                              ....++..|+|||.+.+..++.++|||||||++|||+||+.|+......          .............
T Consensus       198 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (326)
T 2w1i_A          198 DKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLK  277 (326)
T ss_dssp             SCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHH
T ss_pred             cccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhh
Confidence                    1234567899999998888999999999999999999999987532100          0000000000010


Q ss_pred             cCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 002105          897 DCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESC  950 (966)
Q Consensus       897 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~  950 (966)
                      ...     .+.....+      ..++.+++.+||+.||++|||+.||+++|+++
T Consensus       278 ~~~-----~~~~~~~~------~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l  320 (326)
T 2w1i_A          278 NNG-----RLPRPDGC------PDEIYMIMTECWNNNVNQRPSFRDLALRVDQI  320 (326)
T ss_dssp             TTC-----CCCCCTTC------CHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred             cCC-----CCCCCCcc------cHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            000     00011111      13567788899999999999999999999983

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=4.4e-34  Score=316.97  Aligned_cols=242  Identities=17%  Similarity=0.238  Sum_probs=184.2

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--------ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--------ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAY  757 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--------~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~  757 (966)
                      .....+|+|++|.||+|+...++..||||.+.....        .....+.+|+..+.+ ++|||||++++++..++ .|
T Consensus        13 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~-~~   90 (322)
T 2ycf_A           13 IMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKK-LNHPCIIKIKNFFDAED-YY   90 (322)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHH-CCCTTBCCEEEEEESSS-EE
T ss_pred             eEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHh-CCCCCCceEeeEEcCCc-eE
Confidence            344567899999999999988899999999854321        123457788888877 69999999999997765 89


Q ss_pred             EEEEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC-CceEEEeccccceec
Q 002105          758 LVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAYCT  833 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~-~~~~~~~~~~~~~~~  833 (966)
                      +||||+++|+|.+++.   .+++.....++.||+.||+|||   ..+|+||||||+||+++.+. ...++++|||.+...
T Consensus        91 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~  167 (322)
T 2ycf_A           91 IVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL  167 (322)
T ss_dssp             EEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSSSCCEEECCCTTCEEC
T ss_pred             EEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEecCCCCCeEEEccCccceec
Confidence            9999999999999985   4899999999999999999999   45899999999999998654 345899999998754


Q ss_pred             CCC-----CcCCccccccccc---CCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccc
Q 002105          834 DSK-----SINSSAYVAPETK---ESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVD  905 (966)
Q Consensus       834 ~~~-----~~~~~~y~aPE~~---~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  905 (966)
                      ...     ..||+.|+|||++   ....++.++|||||||++|||+||+.||........ +.+.....    ...  ..
T Consensus       168 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~----~~~--~~  240 (322)
T 2ycf_A          168 GETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS-LKDQITSG----KYN--FI  240 (322)
T ss_dssp             CCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSC-HHHHHHHT----CCC--CC
T ss_pred             ccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHH-HHHHHHhC----ccc--cC
Confidence            332     3589999999986   356789999999999999999999999975432211 11211110    000  11


Q ss_pred             ccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       906 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      |......      ..++.+++.+|++.||++|||+.|+++
T Consensus       241 ~~~~~~~------~~~~~~li~~~l~~dP~~Rps~~~~l~  274 (322)
T 2ycf_A          241 PEVWAEV------SEKALDLVKKLLVVDPKARFTTEEALR  274 (322)
T ss_dssp             HHHHTTS------CHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             chhhhhc------CHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence            1111111      135667888999999999999999873

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=2.3e-35  Score=334.74  Aligned_cols=229  Identities=13%  Similarity=0.132  Sum_probs=173.2

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHH---HHHhhcCCCceeEEe-------eEEecC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVS---QFGKLIMHPNIVRLH-------GVCRSE  753 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~---~~~~~~~H~niv~l~-------g~~~~~  753 (966)
                      ....+|+|++|.||+|+...+|..||||++.....   ...+.+.+|+.   .+.+ ++|||||+++       +++..+
T Consensus        77 ~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~-l~hpniv~~~~~~~~~~~~~~~~  155 (377)
T 3byv_A           77 RGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRG-IKNQKQAKVHLRFIFPFDLVKDP  155 (377)
T ss_dssp             EEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTT-CCSHHHHHHHHCBCCCSEEEECT
T ss_pred             EcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccc-cCCHHHHHHHhhhhhhhhhhhcc
Confidence            34567999999999999888899999999874322   22345677774   3434 5899999998       666655


Q ss_pred             C-----------------eeEEEEEccCCCCHHHHHHc---CC-------HHHHHHHHHHHHHHHHHHhhcCCCCeEeec
Q 002105          754 K-----------------AAYLVYEYIEGKELSEVLRN---LS-------WERRRKVAIGIAKALRFLHFHCSPSVVAGD  806 (966)
Q Consensus       754 ~-----------------~~~lv~Ey~~~g~L~~~l~~---l~-------~~~~~~i~~~ia~~l~yLH~~~~~~iiHrD  806 (966)
                      +                 ..|+||||+ +|+|.++++.   ++       |..+..++.||++||+|||.   .+|+|||
T Consensus       156 ~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrD  231 (377)
T 3byv_A          156 QKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH---YGLVHTY  231 (377)
T ss_dssp             TSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHH---TTEECSC
T ss_pred             CCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHh---CCeecCC
Confidence            3                 289999999 6899999963   33       58888999999999999994   5899999


Q ss_pred             CCCCcEEEcCCCCceEEEeccccceecC---CCCcCCcccccccccCCC-----------CCCCcchHHHHHHHHHHHHc
Q 002105          807 VSPGKVIVDGKDEPHLRLSVPGLAYCTD---SKSINSSAYVAPETKESK-----------DITEKGDIYGFGLILIDLLT  872 (966)
Q Consensus       807 lk~~Nill~~~~~~~~~~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~-----------~~~~~~Dv~S~Gv~l~el~t  872 (966)
                      |||+|||++.+.  .++++|||++....   ....| +.|+|||++.+.           .++.++|||||||++|||+|
T Consensus       232 ikp~NIll~~~~--~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~ellt  308 (377)
T 3byv_A          232 LRPVDIVLDQRG--GVFLTGFEHLVRDGARVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWC  308 (377)
T ss_dssp             CCGGGEEECTTC--CEEECCGGGCEETTCEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHEEEcCCC--CEEEEechhheecCCcccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHH
Confidence            999999999664  57999999987533   23456 999999999877           89999999999999999999


Q ss_pred             CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          873 GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       873 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      |+.||.......              .... +.+.. ...+      .++.+++.+||+.||++|||+.|+++
T Consensus       309 g~~Pf~~~~~~~--------------~~~~-~~~~~-~~~~------~~~~~li~~~L~~dp~~Rpt~~e~l~  359 (377)
T 3byv_A          309 ADLPITKDAALG--------------GSEW-IFRSC-KNIP------QPVRALLEGFLRYPKEDRLLPLQAME  359 (377)
T ss_dssp             SSCCC------C--------------CSGG-GGSSC-CCCC------HHHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred             CCCCCccccccc--------------chhh-hhhhc-cCCC------HHHHHHHHHHcCCCchhCCCHHHHhh
Confidence            999986431100              0000 00000 1122      24667888999999999999999974

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=1.7e-34  Score=313.12  Aligned_cols=239  Identities=22%  Similarity=0.329  Sum_probs=182.6

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecC-CeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE-KAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~-~~~~lv~Ey~~  764 (966)
                      .....+|+|++|.||++..  .|..||||++....  ..+.+.+|+..+.+ ++|||||++++++.++ +..++||||++
T Consensus        24 ~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~--~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~lv~e~~~   98 (278)
T 1byg_A           24 KLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA--TAQAFLAEASVMTQ-LRHSNLVQLLGVIVEEKGGLYIVTEYMA   98 (278)
T ss_dssp             EEEEEEEECSSCEEEEEEE--TTEEEEEEECCCCC----HHHHHTHHHHTT-CCCTTBCCEEEEECCC--CCEEEECCCT
T ss_pred             eEEeEEecCCCceEEEEEE--cCCEEEEEEecchh--HHHHHHHHHHHHHh-CCCCCEeeEEEEEEcCCCceEEEEecCC
Confidence            4455678899999999986  58899999875432  34567888888877 6999999999997654 47899999999


Q ss_pred             CCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---CC
Q 002105          765 GKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---SK  836 (966)
Q Consensus       765 ~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---~~  836 (966)
                      +|+|.++++.     +++..+..++.|+++||+|||   +.+|+||||||+||+++.+.  .++++|||.+....   ..
T Consensus        99 ~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~--~~~l~Dfg~~~~~~~~~~~  173 (278)
T 1byg_A           99 KGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDN--VAKVSDFGLTKEASSTQDT  173 (278)
T ss_dssp             TEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTS--CEEECCCCC----------
T ss_pred             CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH---hCCccccCCCcceEEEeCCC--cEEEeeccccccccccccC
Confidence            9999999963     899999999999999999999   45899999999999998654  57899999875432   23


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ..+++.|+|||.+.+..++.++||||||+++|||+| |+.||....  ...+...+.   ..      ..+.....++  
T Consensus       174 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~--~~~~~~~~~---~~------~~~~~~~~~~--  240 (278)
T 1byg_A          174 GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP--LKDVVPRVE---KG------YKMDAPDGCP--  240 (278)
T ss_dssp             --CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC--GGGHHHHHT---TT------CCCCCCTTCC--
T ss_pred             CCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHh---cC------CCCCCcccCC--
Confidence            356889999999988899999999999999999999 999987532  111211111   11      0111111222  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                          .++.+++.+||+.||++|||+.|+++.|++ ++
T Consensus       241 ----~~l~~li~~~l~~~p~~Rps~~~l~~~L~~-i~  272 (278)
T 1byg_A          241 ----PAVYEVMKNCWHLDAAMRPSFLQLREQLEH-IK  272 (278)
T ss_dssp             ----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHH-HH
T ss_pred             ----HHHHHHHHHHhcCChhhCCCHHHHHHHHHH-HH
Confidence                256678889999999999999999999998 44

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=1.6e-33  Score=316.46  Aligned_cols=252  Identities=19%  Similarity=0.347  Sum_probs=185.0

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc--cccchHHHHHHHHhhcCCCceeEEeeEEec--------CC
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--TTSSFWPDVSQFGKLIMHPNIVRLHGVCRS--------EK  754 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--~~~~~~~e~~~~~~~~~H~niv~l~g~~~~--------~~  754 (966)
                      +.....+|+|++|.||+|+...+|..||||++......  ....+.+|+..+.+ ++|||||++++++..        ++
T Consensus        19 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~~~~~   97 (351)
T 3mi9_A           19 YEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQL-LKHENVVNLIEICRTKASPYNRCKG   97 (351)
T ss_dssp             EEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHH-CCCTTBCCEEEEEEEC--------C
T ss_pred             eeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHh-ccCCCcccHhheeeccccccccCCc
Confidence            34556689999999999999889999999988544322  23356788888777 699999999999987        44


Q ss_pred             eeEEEEEccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccc
Q 002105          755 AAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA  830 (966)
Q Consensus       755 ~~~lv~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~  830 (966)
                      ..++||||+++ +|.+.+.    .+++.++..++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||.+
T Consensus        98 ~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~--~~kl~Dfg~a  171 (351)
T 3mi9_A           98 SIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDG--VLKLADFGLA  171 (351)
T ss_dssp             EEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTS--CEEECCCTTC
T ss_pred             eEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCC--CEEEccchhc
Confidence            68999999995 7777775    4899999999999999999999   45899999999999999664  5789999987


Q ss_pred             eecC----------CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCc
Q 002105          831 YCTD----------SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCH  899 (966)
Q Consensus       831 ~~~~----------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  899 (966)
                      ....          ....||+.|+|||++.+ ..++.++|||||||++|||+||+.||.+... .+.. ...........
T Consensus       172 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~~-~~i~~~~~~~~  249 (351)
T 3mi9_A          172 RAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTE-QHQL-ALISQLCGSIT  249 (351)
T ss_dssp             EECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHH-HHHHHHHCCCC
T ss_pred             ccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCCh-HHHH-HHHHHHhCCCC
Confidence            5421          23467999999998876 5589999999999999999999999976422 1111 11111111100


Q ss_pred             cccc--ccc--------cccCCCcchHHHH------HHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          900 LDTW--VDP--------FIRGHVSSIQNEI------VEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       900 ~~~~--~d~--------~~~~~~~~~~~~~------~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ...+  .+.        ..........+.+      .++.+++.+|++.||++|||++|+++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  311 (351)
T 3mi9_A          250 PEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN  311 (351)
T ss_dssp             TTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence            0000  000        0000111111111      24678899999999999999999886

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=5.9e-34  Score=313.10  Aligned_cols=238  Identities=18%  Similarity=0.304  Sum_probs=189.8

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .....+|+|++|.||+|+...++..||||.+..... ...+.+.+|+..+.+ ++||||+++++++..++..++||||++
T Consensus        25 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~  103 (303)
T 3a7i_A           25 TKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQ-CDSPYVTKYYGSYLKDTKLWIIMEYLG  103 (303)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHH-CCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred             HHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHh-CCCCCEeEEEEEEecCCeEEEEEEeCC
Confidence            345567899999999999988899999999865432 223557778877777 699999999999999999999999999


Q ss_pred             CCCHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CC
Q 002105          765 GKELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SK  836 (966)
Q Consensus       765 ~g~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~  836 (966)
                      +|+|.++++.  +++..+..++.|++.||+|||.   .+|+||||||+||+++.+.  .++++|||.+....      ..
T Consensus       104 ~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~--~~kl~Dfg~~~~~~~~~~~~~~  178 (303)
T 3a7i_A          104 GGSALDLLEPGPLDETQIATILREILKGLDYLHS---EKKIHRDIKAANVLLSEHG--EVKLADFGVAGQLTDTQIKRNT  178 (303)
T ss_dssp             TEEHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTS--CEEECCCTTCEECBTTBCCBCC
T ss_pred             CCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChheEEECCCC--CEEEeecccceecCccccccCc
Confidence            9999999964  8999999999999999999994   5899999999999998654  57899999875422      23


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchH
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ  916 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  916 (966)
                      ..||+.|+|||++.+..++.++|||||||++|||+||+.||....  .........   ..      ..+.+...++   
T Consensus       179 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~~~~---~~------~~~~~~~~~~---  244 (303)
T 3a7i_A          179 FVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELH--PMKVLFLIP---KN------NPPTLEGNYS---  244 (303)
T ss_dssp             CCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC--HHHHHHHHH---HS------CCCCCCSSCC---
T ss_pred             cCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcC--HHHHHHHhh---cC------CCCCCccccC---
Confidence            468999999999999999999999999999999999999986431  111111111   11      1111222222   


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          917 NEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       917 ~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                         .++.+++.+||+.||++|||+.||++.
T Consensus       245 ---~~l~~li~~~l~~dp~~Rps~~~ll~~  271 (303)
T 3a7i_A          245 ---KPLKEFVEACLNKEPSFRPTAKELLKH  271 (303)
T ss_dssp             ---HHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred             ---HHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence               246678889999999999999999864

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=4.3e-34  Score=336.90  Aligned_cols=242  Identities=21%  Similarity=0.293  Sum_probs=186.7

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-------------ccccchHHHHHHHHhhcCCCceeEEeeEEe
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-------------ITTSSFWPDVSQFGKLIMHPNIVRLHGVCR  751 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-------------~~~~~~~~e~~~~~~~~~H~niv~l~g~~~  751 (966)
                      +.....+|+|++|.||+|+...++..||||++.....             ...+.+.+|+..+.+ ++|||||+++++|.
T Consensus        38 Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~hpniv~~~~~~~  116 (504)
T 3q5i_A           38 YFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKS-LDHPNIIKLFDVFE  116 (504)
T ss_dssp             EEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHT-CCCTTBCCEEEEEE
T ss_pred             eEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHh-CCCCCCCeEEEEEE
Confidence            3455678999999999999988899999999865321             112356778887777 69999999999999


Q ss_pred             cCCeeEEEEEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC-ceEEEecc
Q 002105          752 SEKAAYLVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVP  827 (966)
Q Consensus       752 ~~~~~~lv~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~-~~~~~~~~  827 (966)
                      +++..|+|||||++|+|.+++.   .+++..+..++.||+.||+|||   +.+|+||||||+||+++.+.. ..++++||
T Consensus       117 ~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Df  193 (504)
T 3q5i_A          117 DKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLH---KHNIVHRDIKPENILLENKNSLLNIKIVDF  193 (504)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESSTTCCSSEEECCC
T ss_pred             cCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCcHHHEEEecCCCCccEEEEEC
Confidence            9999999999999999999885   4899999999999999999999   458999999999999987643 46899999


Q ss_pred             ccceecC-----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccc
Q 002105          828 GLAYCTD-----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDT  902 (966)
Q Consensus       828 ~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  902 (966)
                      |++....     ....||+.|+|||++. ..++.++||||+||++|||++|+.||.+..  ...+...+..   . ... 
T Consensus       194 g~a~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~--~~~~~~~i~~---~-~~~-  265 (504)
T 3q5i_A          194 GLSSFFSKDYKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQN--DQDIIKKVEK---G-KYY-  265 (504)
T ss_dssp             TTCEECCTTSCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHH---C-CCC-
T ss_pred             CCCEEcCCCCccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHc---C-CCC-
Confidence            9986532     3356899999999987 468999999999999999999999997542  1111121111   1 000 


Q ss_pred             cccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          903 WVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       903 ~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       .+.......+      .++.+++.+|++.||.+|||++|+++
T Consensus       266 -~~~~~~~~~s------~~~~~li~~~L~~dp~~R~t~~e~l~  301 (504)
T 3q5i_A          266 -FDFNDWKNIS------DEAKELIKLMLTYDYNKRCTAEEALN  301 (504)
T ss_dssp             -CCHHHHTTSC------HHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             -CCccccCCCC------HHHHHHHHHHcCCChhHCCCHHHHhc
Confidence             1100011111      24667888999999999999999974

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=1e-33  Score=321.82  Aligned_cols=193  Identities=21%  Similarity=0.230  Sum_probs=161.4

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCC-----ceeEEeeEEecCCeeEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHP-----NIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~-----niv~l~g~~~~~~~~~lv  759 (966)
                      +.....+|+|++|.||+|+...++..||||++.... ....++..|+..+..+-+|+     +||++++++..++..++|
T Consensus        56 y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv  134 (382)
T 2vx3_A           56 YEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLV  134 (382)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEEEEE
T ss_pred             EEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCceEEE
Confidence            344556799999999999998889999999985322 22334556666665533355     499999999999999999


Q ss_pred             EEccCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          760 YEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      |||++ |+|.++++.     +++..+..++.|++.||+|||.+ ..+||||||||+|||++.+....++++|||.+....
T Consensus       135 ~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~  212 (382)
T 2vx3_A          135 FEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLG  212 (382)
T ss_dssp             EECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETT
T ss_pred             EecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccCceecc
Confidence            99997 599999863     78999999999999999999964 568999999999999976566678999999986533


Q ss_pred             ---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          835 ---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                         ....||+.|+|||++.+..++.++|||||||++|||+||+.||.+.
T Consensus       213 ~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~  261 (382)
T 2vx3_A          213 QRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA  261 (382)
T ss_dssp             CCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence               3457899999999999999999999999999999999999999764

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=4.7e-34  Score=329.02  Aligned_cols=191  Identities=19%  Similarity=0.227  Sum_probs=161.7

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhh-----cCCCceeEEeeEEecCCeeEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL-----IMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~-----~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      +.....+|+|+||.||+|+...++..||||++... ....+.+..|+..+.++     ..|||||++++++...+..++|
T Consensus        99 y~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv  177 (429)
T 3kvw_A           99 YEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMT  177 (429)
T ss_dssp             EEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEEE
T ss_pred             EEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEEE
Confidence            34456679999999999999888999999988542 22233456666655552     2678999999999999999999


Q ss_pred             EEccCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          760 YEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      |||++ |+|.+++..     ++|..+..++.||+.||+|||.   .+||||||||+|||++.+....++++|||++....
T Consensus       178 ~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~  253 (429)
T 3kvw_A          178 FELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHK---NRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEH  253 (429)
T ss_dssp             ECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---HTEECSCCSGGGEEESSTTSCCEEECCCTTCEETT
T ss_pred             EeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEccCCCcceEEeecccceecC
Confidence            99997 699998852     8999999999999999999995   48999999999999998777668999999986532


Q ss_pred             ---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          835 ---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                         ....||+.|+|||++.+..++.++|||||||++|||+||+.||.+.
T Consensus       254 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~  302 (429)
T 3kvw_A          254 QRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE  302 (429)
T ss_dssp             CCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence               3357899999999999999999999999999999999999999764

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=3.9e-34  Score=310.91  Aligned_cols=242  Identities=19%  Similarity=0.264  Sum_probs=185.3

Q ss_pred             ccccCCCCCccEEEEEEEecC---CcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          687 NLTSRGKKGVSSSYKVRSLAN---DMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~---~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      ....+|+|++|.||+|+....   +..||+|.+..... ...+.+.+|+..+.+ ++||||+++++++.+ +..++||||
T Consensus        16 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~-~~~~~v~e~   93 (281)
T 3cc6_A           16 LNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKN-LDHPHIVKLIGIIEE-EPTWIIMEL   93 (281)
T ss_dssp             EEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHH-HCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred             EEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHh-CCCCCcceEEEEEcC-CCCEEEEec
Confidence            344568899999999987533   23589998764422 234567788888877 699999999999875 456899999


Q ss_pred             cCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          763 IEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       763 ~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      +++|+|.++++.    +++..+..++.|+++||+|||   +.+|+||||||+||+++.+.  .++++|||.+....    
T Consensus        94 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~--~~kl~Dfg~~~~~~~~~~  168 (281)
T 3cc6_A           94 YPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVASPE--CVKLGDFGLSRYIEDEDY  168 (281)
T ss_dssp             CTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEEETT--EEEECCCCGGGCC-----
T ss_pred             CCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEECCCC--cEEeCccCCCcccccccc
Confidence            999999999953    899999999999999999999   45899999999999998654  67899999876422    


Q ss_pred             ---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          835 ---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                         ....+++.|+|||.+.+..++.++|||||||++|||+| |+.||.....  ....+....   ....      ....
T Consensus       169 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~--~~~~~~~~~---~~~~------~~~~  237 (281)
T 3cc6_A          169 YKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLEN--KDVIGVLEK---GDRL------PKPD  237 (281)
T ss_dssp             ----CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCG--GGHHHHHHH---TCCC------CCCT
T ss_pred             cccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCCh--HHHHHHHhc---CCCC------CCCC
Confidence               22346778999999988899999999999999999999 9999864321  112122211   1000      0111


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      ..+      .++.+++.+|++.||++|||+.|+++.|+++..
T Consensus       238 ~~~------~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~  273 (281)
T 3cc6_A          238 LCP------PVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQ  273 (281)
T ss_dssp             TCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCC------HHHHHHHHHHccCCchhCcCHHHHHHHHHHHHH
Confidence            111      246678889999999999999999999998543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=8.3e-34  Score=341.65  Aligned_cols=333  Identities=21%  Similarity=0.205  Sum_probs=211.6

Q ss_pred             CCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceec
Q 002105          227 LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILH  306 (966)
Q Consensus       227 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  306 (966)
                      +.+++.|++++|.+....+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|+.|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            34455555555555543333444555555555555555544444555555555555555555544444445555555555


Q ss_pred             ccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCC
Q 002105          307 LFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEG  386 (966)
Q Consensus       307 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~  386 (966)
                      |++|.+++..+..|+++++|++|+|++|.+++..|..|..+++|+.|+|+                        +|.+++
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~------------------------~N~l~~  185 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS------------------------SNRLTH  185 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT------------------------TSCCSB
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc------------------------CCCCCC
Confidence            55555544333334445555555555555544444444444445555554                        444443


Q ss_pred             CCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCccCCCCcCc
Q 002105          387 KIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS  466 (966)
Q Consensus       387 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  466 (966)
                      ..   +..+++|+.|++++|.+++.     ...+.|+.|++++|.++...+..   .++|+.|+|++|.+++. +.+..+
T Consensus       186 ~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~-~~l~~l  253 (597)
T 3oja_B          186 VD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT-AWLLNY  253 (597)
T ss_dssp             CC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC-GGGGGC
T ss_pred             cC---hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC-hhhccC
Confidence            31   34455666666666666542     23456777777777776543322   25788888888888763 345567


Q ss_pred             ccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeC
Q 002105          467 DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDL  546 (966)
Q Consensus       467 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdL  546 (966)
                      ++|+.|+|++|.+++..|..|+.+++|+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..++.+++|+.|+|
T Consensus       254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L  331 (597)
T 3oja_B          254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL  331 (597)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred             CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEEC
Confidence            788888888888888888888899999999999999886 5777778889999999999998 57777888899999999


Q ss_pred             CCCcCcccCCcccccCCCCCeeeCcCCcccccCCCCCccCCCccccccCC-CCCCC
Q 002105          547 SENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGN-DLCGG  601 (966)
Q Consensus       547 s~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn-~lcg~  601 (966)
                      ++|++++..   +..++.|+.|++++|+++|..+ ...+..+....+.++ ..|+.
T Consensus       332 ~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~  383 (597)
T 3oja_B          332 DHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKI  383 (597)
T ss_dssp             CSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCT
T ss_pred             CCCCCCCcC---hhhcCCCCEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCc
Confidence            999998653   5677889999999999987643 223444445555666 66765

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=4.6e-34  Score=318.60  Aligned_cols=236  Identities=20%  Similarity=0.305  Sum_probs=187.1

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|++|.||+++...++..||+|.+.....   ...+.+.+|+..+.+ ++|||||++++++.+++..|+||||
T Consensus        44 ~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~  122 (335)
T 2owb_A           44 VRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRS-LAHQHVVGFHGFFEDNDFVFVVLEL  122 (335)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHT-CCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             EEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHh-CCCCCCCeEEEEEecCCeEEEEEec
Confidence            344557899999999999988899999998865422   223456777777776 6999999999999999999999999


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----  834 (966)
                      +++++|.+++.   .+++.++..++.|+++||+|||.   .+|+||||||+||+++.+.  .+++.|||.+....     
T Consensus       123 ~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~~~--~~kl~Dfg~~~~~~~~~~~  197 (335)
T 2owb_A          123 CRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDL--EVKIGDFGLATKVEYDGER  197 (335)
T ss_dssp             CTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTC--CEEECCCTTCEECCSTTCC
T ss_pred             CCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH---CCCEecCCCchhEEEcCCC--CEEEeeccCceecccCccc
Confidence            99999999886   38999999999999999999994   5899999999999999654  47899999986432     


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                       ....||+.|+|||++.+..++.++|||||||++|||+||+.||..... .+.......   ...        .+....+
T Consensus       198 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-~~~~~~~~~---~~~--------~~~~~~~  265 (335)
T 2owb_A          198 KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL-KETYLRIKK---NEY--------SIPKHIN  265 (335)
T ss_dssp             BCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH-HHHHHHHHH---TCC--------CCCTTSC
T ss_pred             ccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCH-HHHHHHHhc---CCC--------CCCccCC
Confidence             234689999999999998999999999999999999999999975321 111111111   010        1111121


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                            .++.+++.+||+.||++|||++|+++
T Consensus       266 ------~~~~~li~~~l~~dp~~Rps~~ell~  291 (335)
T 2owb_A          266 ------PVAASLIQKMLQTDPTARPTINELLN  291 (335)
T ss_dssp             ------HHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             ------HHHHHHHHHHccCChhHCcCHHHHhc
Confidence                  24566788999999999999999986

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=2.4e-34  Score=337.76  Aligned_cols=241  Identities=21%  Similarity=0.285  Sum_probs=188.1

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc---ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT---ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~---~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|++|.||+|+...+|..||||++.....   ...+.+.+|+..+.+ ++|||||++++++.+++..|+||||
T Consensus        29 ~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~-l~hpniv~~~~~~~~~~~~~lv~e~  107 (484)
T 3nyv_A           29 KGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQ-LDHPNIMKLYEFFEDKGYFYLVGEV  107 (484)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTT-CCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             EEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHh-CCCCCCCcEEEEEEeCCEEEEEEec
Confidence            345567899999999999988999999999865432   233457788888777 6999999999999999999999999


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC-CCceEEEeccccceecCCC--
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK-DEPHLRLSVPGLAYCTDSK--  836 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~-~~~~~~~~~~~~~~~~~~~--  836 (966)
                      +++|+|.+++.   .+++..+..++.||+.||+|||.   .+|+||||||+||+++.. ....++++|||++......  
T Consensus       108 ~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~  184 (484)
T 3nyv_A          108 YTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHK---NKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKK  184 (484)
T ss_dssp             CCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCS
T ss_pred             CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccccc
Confidence            99999999985   48999999999999999999994   589999999999999642 3457899999988643222  


Q ss_pred             ---CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          837 ---SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       837 ---~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                         ..||+.|+|||++.+ .++.++||||+||++|||+||+.||.+.. ..+.. ..+..   . .... ..|.. ...+
T Consensus       185 ~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~-~~~~~-~~i~~---~-~~~~-~~~~~-~~~s  255 (484)
T 3nyv_A          185 MKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGAN-EYDIL-KKVEK---G-KYTF-ELPQW-KKVS  255 (484)
T ss_dssp             HHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHH-HHHHH---C-CCCC-CSGGG-GGSC
T ss_pred             cccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCC-HHHHH-HHHHc---C-CCCC-CCccc-ccCC
Confidence               368999999999876 68999999999999999999999997542 11211 22211   1 1000 00110 1111


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                            .++.+++.+|++.||++|||+.|+++
T Consensus       256 ------~~~~~li~~~L~~dp~~R~s~~e~l~  281 (484)
T 3nyv_A          256 ------ESAKDLIRKMLTYVPSMRISARDALD  281 (484)
T ss_dssp             ------HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ------HHHHHHHHHHCCCChhHCcCHHHHhh
Confidence                  24667888999999999999999984

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.6e-34  Score=320.36  Aligned_cols=243  Identities=22%  Similarity=0.282  Sum_probs=185.6

Q ss_pred             ccccccCCCCCccEEEEEEEe---cCCcEEEEEEEeccC----cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeE
Q 002105          685 EENLTSRGKKGVSSSYKVRSL---ANDMQFVVKKIIDVN----TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAY  757 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~---~~~~~vavk~~~~~~----~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~  757 (966)
                      +.....+|+|+||.||+++..   .++..||||++....    ....+.+.+|+..+.++-.|||||++++++..++..+
T Consensus        56 y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~  135 (355)
T 1vzo_A           56 FELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLH  135 (355)
T ss_dssp             EEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEE
T ss_pred             eEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCceEE
Confidence            345556799999999999984   478999999985432    2234557788888877447999999999999999999


Q ss_pred             EEEEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-
Q 002105          758 LVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-  833 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-  833 (966)
                      +||||+++|+|.+++.   .+++.....++.||++||+|||   +.+|+||||||+||+++.+.  .++++|||++... 
T Consensus       136 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~--~~kl~DfG~a~~~~  210 (355)
T 1vzo_A          136 LILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNG--HVVLTDFGLSKEFV  210 (355)
T ss_dssp             EEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTS--CEEESCSSEEEECC
T ss_pred             EEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCC--cEEEeeCCCCeecc
Confidence            9999999999999996   3899999999999999999999   45899999999999998654  5789999987642 


Q ss_pred             ------CCCCcCCcccccccccCC--CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccc
Q 002105          834 ------DSKSINSSAYVAPETKES--KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVD  905 (966)
Q Consensus       834 ------~~~~~~~~~y~aPE~~~~--~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  905 (966)
                            .....||+.|+|||++.+  ..++.++|||||||++|||+||+.||....... ...+..+.....       .
T Consensus       211 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~-~~~~~~~~~~~~-------~  282 (355)
T 1vzo_A          211 ADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKN-SQAEISRRILKS-------E  282 (355)
T ss_dssp             GGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCC-CHHHHHHHHHHC-------C
T ss_pred             cCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccc-hHHHHHHHHhcc-------C
Confidence                  123468999999999885  457899999999999999999999997542221 111222221111       1


Q ss_pred             ccccCCCcchHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 002105          906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARP-----CASDVTKT  946 (966)
Q Consensus       906 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RP-----t~~~v~~~  946 (966)
                      +......+      ..+.+++.+|++.||++||     +++|+++.
T Consensus       283 ~~~~~~~~------~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h  322 (355)
T 1vzo_A          283 PPYPQEMS------ALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH  322 (355)
T ss_dssp             CCCCTTSC------HHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred             CCCCcccC------HHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence            11111122      2456788899999999999     88888753

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=2.3e-34  Score=320.96  Aligned_cols=237  Identities=21%  Similarity=0.271  Sum_probs=163.9

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEec----CCeeEEEEEccCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS----EKAAYLVYEYIEGK  766 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~----~~~~~lv~Ey~~~g  766 (966)
                      +|+|++|.||+|+...+|..||||++...     .....|+....+.+.||||+++++++..    ++..++||||+++|
T Consensus        37 lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg  111 (336)
T 3fhr_A           37 LGLGVNGKVLECFHRRTGQKCALKLLYDS-----PKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGG  111 (336)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEEEEESS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCTTE
T ss_pred             eeeCCCeEEEEEEECCCCCEEEEEEecCc-----HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEEEEEeccCCC
Confidence            68999999999999889999999998542     2345566665666899999999999976    45689999999999


Q ss_pred             CHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC-CceEEEeccccceecC----CC
Q 002105          767 ELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAYCTD----SK  836 (966)
Q Consensus       767 ~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~-~~~~~~~~~~~~~~~~----~~  836 (966)
                      +|.+++.     .+++.++..++.|++.||+|||   ..+|+||||||+||+++.+. ...++++|||.+....    ..
T Consensus       112 ~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~~~~  188 (336)
T 3fhr_A          112 ELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQT  188 (336)
T ss_dssp             EHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC-------
T ss_pred             CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEEecCCCceEEEeccccceecccccccc
Confidence            9999996     3889999999999999999999   45899999999999998643 4568999999986532    23


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchH
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ  916 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  916 (966)
                      ..+|+.|+|||++.+..++.++|||||||++|||+||+.||........ ...... ....... ....+. ....+   
T Consensus       189 ~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~-~~~~~~~-~~~~~~-~~~~~---  261 (336)
T 3fhr_A          189 PCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAI-SPGMKR-RIRLGQY-GFPNPE-WSEVS---  261 (336)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHHHHHHSSCCC------------------------CCCTTT-STTCC---
T ss_pred             CCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhh-hhhHHH-hhhcccc-ccCchh-hccCC---
Confidence            4678999999999988999999999999999999999999865422110 000000 0000000 000110 01111   


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          917 NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       917 ~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         .++.+++.+|++.||++|||++|+++
T Consensus       262 ---~~~~~li~~~L~~dP~~Rpt~~ell~  287 (336)
T 3fhr_A          262 ---EDAKQLIRLLLKTDPTERLTITQFMN  287 (336)
T ss_dssp             ---HHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             ---HHHHHHHHHHCCCChhHCcCHHHHhc
Confidence               24667888999999999999999986

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=2.2e-33  Score=326.18  Aligned_cols=249  Identities=13%  Similarity=0.151  Sum_probs=191.8

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .....+|+|+||.||+|+...++..||||.+....  ...++..|+..+.++-.|++|+.+..++..++..++||||+ +
T Consensus        10 ~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~-g   86 (483)
T 3sv0_A           10 RLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKT--KHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL-G   86 (483)
T ss_dssp             ECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTC--SSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC-C
T ss_pred             EEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccc--ccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC-C
Confidence            34556799999999999998899999999765433  23567888888877534477777777888889999999999 9


Q ss_pred             CCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcC-CCCceEEEeccccceecC------
Q 002105          766 KELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDG-KDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       766 g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~-~~~~~~~~~~~~~~~~~~------  834 (966)
                      |+|.++++    .++|..+..++.||+.||+|||.   .+||||||||+|||++. +....++++|||++....      
T Consensus        87 ~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~---~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~  163 (483)
T 3sv0_A           87 PSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHS---KSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQ  163 (483)
T ss_dssp             CBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCC
T ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCcccc
Confidence            99999996    48999999999999999999994   58999999999999942 133568899999986421      


Q ss_pred             -------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc--hhhHHHHHHHhhccCccccccc
Q 002105          835 -------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV--HESIVEWARYCYSDCHLDTWVD  905 (966)
Q Consensus       835 -------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d  905 (966)
                             ....||+.|+|||++.+..++.++|||||||++|||++|+.||......  .+.+..+...... ..    ++
T Consensus       164 ~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~-~~----~~  238 (483)
T 3sv0_A          164 HIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVA-TS----IE  238 (483)
T ss_dssp             BCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHH-SC----HH
T ss_pred             ccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhcccc-cc----HH
Confidence                   1346899999999999999999999999999999999999999764322  1112111111110 00    00


Q ss_pred             ccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       906 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      . +...++      .++.+++..||+.+|++||++.+|+++|++++.
T Consensus       239 ~-l~~~~p------~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~  278 (483)
T 3sv0_A          239 A-LCRGYP------TEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFI  278 (483)
T ss_dssp             H-HHTTSC------HHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred             H-HhcCCc------HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence            0 111111      356778889999999999999999999998654

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.6e-33  Score=311.32  Aligned_cols=238  Identities=19%  Similarity=0.304  Sum_probs=185.1

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      +.....+|+|++|.||+|+...+|..||+|++....  ..+.+.+|+..+.+ ++||||+++++++..++..++||||++
T Consensus        31 y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~  107 (314)
T 3com_A           31 FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQ-CDSPHVVKYYGSYFKNTDLWIVMEYCG  107 (314)
T ss_dssp             EEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHT-CCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred             hhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHh-CCCCCCccEEEEEEeCCEEEEEeecCC
Confidence            345566899999999999998889999999986532  34567888888877 699999999999999999999999999


Q ss_pred             CCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          765 GKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       765 ~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      +|+|.++++    .+++..+..++.+++.||+|||   ..+|+||||||+||+++.+.  .+++.|||.+....      
T Consensus       108 ~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~--~~kl~dfg~~~~~~~~~~~~  182 (314)
T 3com_A          108 AGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEG--HAKLADFGVAGQLTDTMAKR  182 (314)
T ss_dssp             TEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTC--CEEECCCTTCEECBTTBSCB
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcCHHHEEECCCC--CEEEeecccchhhhhhcccc
Confidence            999999986    4899999999999999999999   45899999999999998654  57899999875422      


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ....|++.|+|||.+.+..++.++|||||||++|||+||+.||..... .... ....   .. ....+..+   ..++ 
T Consensus       183 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-~~~~-~~~~---~~-~~~~~~~~---~~~~-  252 (314)
T 3com_A          183 NTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHP-MRAI-FMIP---TN-PPPTFRKP---ELWS-  252 (314)
T ss_dssp             CCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCH-HHHH-HHHH---HS-CCCCCSSG---GGSC-
T ss_pred             CccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCCh-HHHH-HHHh---cC-CCcccCCc---ccCC-
Confidence            234688999999999999999999999999999999999999864321 1111 1111   11 00000001   1111 


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                           .++.+++.+|++.||++|||+.|+++
T Consensus       253 -----~~l~~li~~~l~~dp~~Rpt~~~ll~  278 (314)
T 3com_A          253 -----DNFTDFVKQCLVKSPEQRATATQLLQ  278 (314)
T ss_dssp             -----HHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             -----HHHHHHHHHHccCChhhCcCHHHHHh
Confidence                 24667888999999999999999975

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=4e-34  Score=318.63  Aligned_cols=254  Identities=19%  Similarity=0.324  Sum_probs=186.9

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc--cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      +.....+|+|++|.||+|+...+|..||||++......  ..+.+.+|+..+.+ ++|||||+++++|.+++..++||||
T Consensus        27 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~  105 (331)
T 4aaa_A           27 YENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQ-LRHENLVNLLEVCKKKKRWYLVFEF  105 (331)
T ss_dssp             EEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHH-CCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             heeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhh-CCCCCEeeEEEEeecCCEEEEEEec
Confidence            34555678999999999999888999999998654322  12346677777777 6999999999999999999999999


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------  833 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------  833 (966)
                      +++++|.+++.   .+++..+..++.|++.||+|||   ..+|+||||||+||+++.+.  .++++|||.+...      
T Consensus       106 ~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nil~~~~~--~~kl~Dfg~~~~~~~~~~~  180 (331)
T 4aaa_A          106 VDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCH---SHNIIHRDIKPENILVSQSG--VVKLCDFGFARTLAAPGEV  180 (331)
T ss_dssp             CSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTS--CEEECCCTTC---------
T ss_pred             CCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---HCCEEccCcChheEEEcCCC--cEEEEeCCCceeecCCccc
Confidence            99999998874   4899999999999999999999   45899999999999998654  5789999987542      


Q ss_pred             CCCCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHh----------hc-cCccc
Q 002105          834 DSKSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYC----------YS-DCHLD  901 (966)
Q Consensus       834 ~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~----------~~-~~~~~  901 (966)
                      .....+|+.|+|||++.+. .++.++|||||||++|||+||+.||...... +.........          +. .....
T Consensus       181 ~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (331)
T 4aaa_A          181 YDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDI-DQLYHIMMCLGNLIPRHQELFNKNPVFA  259 (331)
T ss_dssp             ---CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCSCCHHHHHHHHHCGGGT
T ss_pred             cCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcH-HHHHHHHHHhCCCChhhhhHhhhccccc
Confidence            1234689999999998775 7899999999999999999999999764321 1111111100          00 00000


Q ss_pred             ccccccccCCCcch---HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          902 TWVDPFIRGHVSSI---QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       902 ~~~d~~~~~~~~~~---~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .+..|.+.......   .....++.+++.+|++.||++|||++|+++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  306 (331)
T 4aaa_A          260 GVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH  306 (331)
T ss_dssp             TCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             cccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence            00111111100000   011235778889999999999999999874

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=3.9e-34  Score=322.67  Aligned_cols=190  Identities=20%  Similarity=0.350  Sum_probs=161.3

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .....+|+|++|.||+++...++..||+|++.... ....+.+.+|+..+.+ ++|||||++++++..++..++||||++
T Consensus        36 ~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~  114 (360)
T 3eqc_A           36 EKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHE-CNSPYIVGFYGAFYSDGEISICMEHMD  114 (360)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGG-CCCTTBCCEEEEEEETTEEEEEECCCT
T ss_pred             eeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHH-CCCCCEEEEeEEEEECCEEEEEEECCC
Confidence            44556789999999999998899999999886542 2223456777777777 699999999999999999999999999


Q ss_pred             CCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee----cCCCC
Q 002105          765 GKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC----TDSKS  837 (966)
Q Consensus       765 ~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~----~~~~~  837 (966)
                      +|+|.++++   .+++.....++.+++.||+|||+.  .+|+||||||+||+++.+.  .++++|||.+..    .....
T Consensus       115 ~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~--~~kl~Dfg~~~~~~~~~~~~~  190 (360)
T 3eqc_A          115 GGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRG--EIKLCDFGVSGQLIDSMANSF  190 (360)
T ss_dssp             TCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTC--CEEECCCCCCHHHHHHC----
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh--CCEEcCCccHHHEEECCCC--CEEEEECCCCcccccccccCC
Confidence            999999996   489999999999999999999952  2799999999999999764  478999998743    23345


Q ss_pred             cCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                      .||+.|+|||++.+..++.++|||||||++|||+||+.||...
T Consensus       191 ~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  233 (360)
T 3eqc_A          191 VGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP  233 (360)
T ss_dssp             CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCC
T ss_pred             CCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            7899999999999999999999999999999999999999753

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=2.3e-35  Score=326.64  Aligned_cols=248  Identities=16%  Similarity=0.253  Sum_probs=187.7

Q ss_pred             cccccCCCCCccEEEEEEE----ecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEec--CCeeEE
Q 002105          686 ENLTSRGKKGVSSSYKVRS----LANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS--EKAAYL  758 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~----~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~--~~~~~l  758 (966)
                      .....+|+|++|.||++..    ..++..||||++..... ...+.+.+|+..+.+ ++|||||++++++.+  ....++
T Consensus        34 ~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~~l  112 (318)
T 3lxp_A           34 KKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRT-LYHEHIIKYKGCCEDAGAASLQL  112 (318)
T ss_dssp             EEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHH-CCCTTBCCEEEEEEETTTTEEEE
T ss_pred             hhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHh-CCCcchhhEEEEEecCCCceEEE
Confidence            3455679999999987753    34788999999865422 223457788888877 699999999999987  467899


Q ss_pred             EEEccCCCCHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          759 VYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      ||||+++|+|.++++.  +++..+..++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||.+....  
T Consensus       113 v~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH---~~~ivH~Dikp~Nil~~~~~--~~kl~Dfg~a~~~~~~  187 (318)
T 3lxp_A          113 VMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDR--LVKIGDFGLAKAVPEG  187 (318)
T ss_dssp             EECCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTC--CEEECCGGGCEECCTT
T ss_pred             EEecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEEcCCC--CEEECCcccccccccc
Confidence            9999999999999974  899999999999999999999   45899999999999998654  57899999886532  


Q ss_pred             -------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCch----------hhHHHHHHHhhcc
Q 002105          835 -------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVH----------ESIVEWARYCYSD  897 (966)
Q Consensus       835 -------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~----------~~~~~~~~~~~~~  897 (966)
                             ....+|+.|+|||++.+..++.++|||||||++|||+||+.||.......          ....+... ....
T Consensus       188 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  266 (318)
T 3lxp_A          188 HEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTE-LLER  266 (318)
T ss_dssp             CSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHH-HHHT
T ss_pred             ccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHH-HHhc
Confidence                   22356778999999998889999999999999999999999986421100          00000111 0111


Q ss_pred             CcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 002105          898 CHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCF  951 (966)
Q Consensus       898 ~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~  951 (966)
                      ..     .+.....++      .++.+++.+||+.||++|||++|+++.|+++.
T Consensus       267 ~~-----~~~~~~~~~------~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~  309 (318)
T 3lxp_A          267 GE-----RLPRPDKCP------AEVYHLMKNCWETEASFRPTFENLIPILKTVH  309 (318)
T ss_dssp             TC-----CCCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             cc-----CCCCCcccc------HHHHHHHHHHcCCCcccCcCHHHHHHHHHHHH
Confidence            00     001111121      35677888999999999999999999999843

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=2e-33  Score=316.97  Aligned_cols=241  Identities=21%  Similarity=0.293  Sum_probs=185.2

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc--------ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT--------TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAY  757 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~--------~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~  757 (966)
                      .....+|+|++|.||+|+...+|..||||.+.......        .+.+.+|+..+.++.+||||+++++++...+..|
T Consensus        97 ~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~  176 (365)
T 2y7j_A           97 DPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMF  176 (365)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSSEEE
T ss_pred             ccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCCEEE
Confidence            33456788999999999997789999999886543211        2345677777777448999999999999999999


Q ss_pred             EEEEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          758 LVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      +||||+++|+|.+++.   .+++..+..++.||+.||+|||.   .+|+||||||+||+++.++  .+++.|||++....
T Consensus       177 lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~---~gi~H~Dlkp~NIl~~~~~--~ikl~DfG~~~~~~  251 (365)
T 2y7j_A          177 LVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHA---NNIVHRDLKPENILLDDNM--QIRLSDFGFSCHLE  251 (365)
T ss_dssp             EEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTC--CEEECCCTTCEECC
T ss_pred             EEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCC--CEEEEecCcccccC
Confidence            9999999999999986   48999999999999999999994   5899999999999999654  57899999876432


Q ss_pred             -----CCCcCCcccccccccC------CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccc
Q 002105          835 -----SKSINSSAYVAPETKE------SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTW  903 (966)
Q Consensus       835 -----~~~~~~~~y~aPE~~~------~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  903 (966)
                           ....||+.|+|||++.      ...++.++|||||||++|||+||+.||....  .......+.   .. ... .
T Consensus       252 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~--~~~~~~~i~---~~-~~~-~  324 (365)
T 2y7j_A          252 PGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRR--QILMLRMIM---EG-QYQ-F  324 (365)
T ss_dssp             TTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHH---HT-CCC-C
T ss_pred             CCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCC--HHHHHHHHH---hC-CCC-C
Confidence                 2357899999999875      3368899999999999999999999986531  111111111   11 000 0


Q ss_pred             ccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          904 VDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       904 ~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ..|.. ...      ..++.+++.+|++.||++|||+.|+++
T Consensus       325 ~~~~~-~~~------~~~~~~li~~~L~~dP~~Rps~~ell~  359 (365)
T 2y7j_A          325 SSPEW-DDR------SSTVKDLISRLLQVDPEARLTAEQALQ  359 (365)
T ss_dssp             CHHHH-SSS------CHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             CCccc-ccC------CHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            01100 111      124667888999999999999999875

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=1e-34  Score=328.66  Aligned_cols=245  Identities=12%  Similarity=0.073  Sum_probs=168.1

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc---cccchHHHHHHHHhhc-CCCceeEEe-------eEEecC-
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI---TTSSFWPDVSQFGKLI-MHPNIVRLH-------GVCRSE-  753 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~---~~~~~~~e~~~~~~~~-~H~niv~l~-------g~~~~~-  753 (966)
                      .....+|+|++|.||+|++..+|..||||++......   ..+.+.+|+..+..+- +|||||+++       +++..+ 
T Consensus        65 ~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~~~~  144 (371)
T 3q60_A           65 KLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQS  144 (371)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEEETT
T ss_pred             eeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehheecCC
Confidence            4455679999999999999889999999999764321   2233455543333321 599988865       444433 


Q ss_pred             ----------------CeeEEEEEccCCCCHHHHHHc----CCHHHH------HHHHHHHHHHHHHHhhcCCCCeEeecC
Q 002105          754 ----------------KAAYLVYEYIEGKELSEVLRN----LSWERR------RKVAIGIAKALRFLHFHCSPSVVAGDV  807 (966)
Q Consensus       754 ----------------~~~~lv~Ey~~~g~L~~~l~~----l~~~~~------~~i~~~ia~~l~yLH~~~~~~iiHrDl  807 (966)
                                      ...|+|||||+ |+|.++++.    +.+..+      ..++.||++||+|||   +.+||||||
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH---~~~ivHrDi  220 (371)
T 3q60_A          145 QPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQ---SKGLVHGHF  220 (371)
T ss_dssp             SCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHH---HTTEEETTC
T ss_pred             CCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHH---HCCCccCcC
Confidence                            33799999999 899999963    566667      788899999999999   458999999


Q ss_pred             CCCcEEEcCCCCceEEEeccccceecCC---CCcCCcccccccccCC--CCCCCcchHHHHHHHHHHHHcCCCCCCCCCC
Q 002105          808 SPGKVIVDGKDEPHLRLSVPGLAYCTDS---KSINSSAYVAPETKES--KDITEKGDIYGFGLILIDLLTGKSPADADFG  882 (966)
Q Consensus       808 k~~Nill~~~~~~~~~~~~~~~~~~~~~---~~~~~~~y~aPE~~~~--~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~  882 (966)
                      ||+|||++.+.  .++++|||++.....   ...+|+.|+|||++.+  ..++.++|||||||++|||+||+.||.....
T Consensus       221 kp~NIll~~~~--~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~  298 (371)
T 3q60_A          221 TPDNLFIMPDG--RLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTP  298 (371)
T ss_dssp             SGGGEEECTTS--CEEECCGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCT
T ss_pred             CHHHEEECCCC--CEEEEecceeeecCCCccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCc
Confidence            99999999754  579999999875432   3457799999999987  7799999999999999999999999976422


Q ss_pred             chhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          883 VHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       883 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ....  .|............+..|.. ...   .   .++.+++.+||+.||++|||+.|+++
T Consensus       299 ~~~~--~~~~~~~~~~~~~~~~~~~~-~~~---~---~~~~~li~~~L~~dP~~Rpt~~e~l~  352 (371)
T 3q60_A          299 GIKG--SWKRPSLRVPGTDSLAFGSC-TPL---P---DFVKTLIGRFLNFDRRRRLLPLEAME  352 (371)
T ss_dssp             TCTT--CCCBCCTTSCCCCSCCCTTS-SCC---C---HHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred             cccc--chhhhhhhhccccccchhhc-cCC---C---HHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            1100  00000000000000001100 111   1   25667788999999999999999863

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=1.2e-33  Score=324.70  Aligned_cols=248  Identities=22%  Similarity=0.248  Sum_probs=181.1

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecC------CeeEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE------KAAYL  758 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~------~~~~l  758 (966)
                      +.....+|+|+||.||+|+...+|..||||++....    ..+.+|+..+.+ ++|||||+++++|...      ...++
T Consensus        56 y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~-l~hpniv~l~~~~~~~~~~~~~~~~~l  130 (420)
T 1j1b_A           56 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRK-LDHCNIVRLRYFFYSSGEKKDEVYLNL  130 (420)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHT-CCCTTBCCEEEEEEEEETTTTEEEEEE
T ss_pred             EEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHH-cCCCCccceeeEEeccCCCCcceeEEe
Confidence            344556799999999999998889999999986432    234467777766 7999999999998542      23679


Q ss_pred             EEEccCCCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccce
Q 002105          759 VYEYIEGKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY  831 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~  831 (966)
                      ||||+++ ++.+.++       .+++.....++.||++||+|||   +.+|+||||||+|||++.+. ..++++|||++.
T Consensus       131 v~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NILl~~~~-~~~kl~DFG~a~  205 (420)
T 1j1b_A          131 VLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDT-AVLKLCDFGSAK  205 (420)
T ss_dssp             EEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEEETTT-TEEEECCCTTCE
T ss_pred             ehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEEEeCCC-CeEEeccchhhh
Confidence            9999995 6666553       3899999999999999999999   56999999999999998543 457999999986


Q ss_pred             ecC-----CCCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhc---------
Q 002105          832 CTD-----SKSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYS---------  896 (966)
Q Consensus       832 ~~~-----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~---------  896 (966)
                      ...     ....+|+.|+|||++.+. .|+.++|||||||++|||++|+.||.+... .+.+.+.....-.         
T Consensus       206 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~-~~~l~~i~~~lg~p~~~~~~~~  284 (420)
T 1j1b_A          206 QLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSG-VDQLVEIIKVLGTPTREQIREM  284 (420)
T ss_dssp             ECCTTCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCSCCHHHHHHH
T ss_pred             hcccCCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHHHHhh
Confidence            532     234689999999998764 799999999999999999999999976532 2222222221000         


Q ss_pred             cCcccccccccccCCCcchH-----HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          897 DCHLDTWVDPFIRGHVSSIQ-----NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       897 ~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ......+..|.+...  .+.     ....++.+++.+|++.||++|||+.|+++
T Consensus       285 ~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~  336 (420)
T 1j1b_A          285 NPNYTEFKFPQIKAH--PWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA  336 (420)
T ss_dssp             CSCCCCCCCCCCCCC--CHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ChhhhhhccCccCCC--CHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence            000111111111110  000     01135778889999999999999999874

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=2.9e-34  Score=334.57  Aligned_cols=182  Identities=19%  Similarity=0.312  Sum_probs=142.6

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEec-----CCeeE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS-----EKAAY  757 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~-----~~~~~  757 (966)
                      +.....+|+|+||.||+|++..++..||||++....  ....+.+.+|+..+.+ ++|||||++++++..     .+..|
T Consensus        55 y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~l~~~~~~~~~~~~~~~~  133 (458)
T 3rp9_A           55 YEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNR-LNHDHVVKVLDIVIPKDVEKFDELY  133 (458)
T ss_dssp             EEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHH-CCCTTBCCEEEECCCSCTTTCCCEE
T ss_pred             eEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHh-CCCCCCCceEEEEecCCcccCceEE
Confidence            345566899999999999998899999999986532  2233557788888877 699999999999954     35789


Q ss_pred             EEEEccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          758 LVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      +||||++ |+|.++++.   +++.....++.||+.||+|||   +.+||||||||+|||++.+.  .++++|||++....
T Consensus       134 lv~e~~~-~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~iiHrDlKp~NILl~~~~--~~kl~DFGla~~~~  207 (458)
T 3rp9_A          134 VVLEIAD-SDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVH---SAGILHRDLKPANCLVNQDC--SVKVCDFGLARTVD  207 (458)
T ss_dssp             EEECCCS-EEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTC--CEEECCCTTCBCTT
T ss_pred             EEEeccc-cchhhhcccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcCCCCCChhhEEECCCC--CEeecccccchhcc
Confidence            9999986 799999874   899999999999999999999   45899999999999999764  57999999986422


Q ss_pred             ---------------------------------CCCcCCccccccccc-CCCCCCCcchHHHHHHHHHHHHcC
Q 002105          835 ---------------------------------SKSINSSAYVAPETK-ESKDITEKGDIYGFGLILIDLLTG  873 (966)
Q Consensus       835 ---------------------------------~~~~~~~~y~aPE~~-~~~~~~~~~Dv~S~Gv~l~el~tg  873 (966)
                                                       ...+||+.|+|||++ ....|+.++|||||||++|||+||
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg  280 (458)
T 3rp9_A          208 YPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM  280 (458)
T ss_dssp             SCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred             CccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence                                             223679999999976 566799999999999999999993

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.5e-34  Score=318.87  Aligned_cols=252  Identities=19%  Similarity=0.260  Sum_probs=184.6

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-----ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-----ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-----~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      .....+|+|++|.||+|+...+|..||||++.....     ...+.+.+|+..+.+ ++|||||++++++..++..++||
T Consensus        13 ~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~   91 (346)
T 1ua2_A           13 EKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQE-LSHPNIIGLLDAFGHKSNISLVF   91 (346)
T ss_dssp             CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHH-CCCTTBCCEEEEECCTTCCEEEE
T ss_pred             EEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhh-CCCCCCCeEEEEEeeCCceEEEE
Confidence            444567899999999999988899999998854321     113457788888877 69999999999999999999999


Q ss_pred             EccCCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          761 EYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       761 Ey~~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      ||+++ +|.+++..    +++..+..++.|+++||+|||.   .+|+||||||+||+++.++  .++++|||++....  
T Consensus        92 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~--~~kl~Dfg~a~~~~~~  165 (346)
T 1ua2_A           92 DFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQ---HWILHRDLKPNNLLLDENG--VLKLADFGLAKSFGSP  165 (346)
T ss_dssp             ECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTC--CEEECCCGGGSTTTSC
T ss_pred             EcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEEcCCC--CEEEEecccceeccCC
Confidence            99996 89988863    7889999999999999999994   5899999999999998754  57899999886421  


Q ss_pred             ----CCCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccc--
Q 002105          835 ----SKSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF--  907 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--  907 (966)
                          ....+|+.|+|||++.+. .++.++|||||||++|||++|++||.+... .+.+...... ........|.+..  
T Consensus       166 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~-~~~~~~i~~~-~~~~~~~~~~~~~~~  243 (346)
T 1ua2_A          166 NRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSD-LDQLTRIFET-LGTPTEEQWPDMCSL  243 (346)
T ss_dssp             CCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHH-HCCCCTTTSSSTTSS
T ss_pred             cccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHH-cCCCChhhhhhhccC
Confidence                234689999999998654 589999999999999999999999876422 2222121111 1111111111100  


Q ss_pred             ---c-cCCCcc-h-----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          908 ---I-RGHVSS-I-----QNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       908 ---~-~~~~~~-~-----~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                         + ....+. .     .....++.+++.+|++.||++|||++|+++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  292 (346)
T 1ua2_A          244 PDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM  292 (346)
T ss_dssp             TTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             cccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence               0 000000 0     0111356778889999999999999999864

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.4e-33  Score=320.73  Aligned_cols=247  Identities=18%  Similarity=0.233  Sum_probs=179.9

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEec------------
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS------------  752 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~------------  752 (966)
                      +.....+|+|++|.||+|+...+|..||||++....    ....+|+..+.+ ++|||||++++++..            
T Consensus         9 y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~----~~~~~E~~il~~-l~hpnIv~l~~~~~~~~~~~~~~~~~~   83 (383)
T 3eb0_A            9 YSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP----RYKNRELDIMKV-LDHVNIIKLVDYFYTTGDEEPKPPQPP   83 (383)
T ss_dssp             EEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHTT-CCCTTBCCEEEEEEEC-----------
T ss_pred             EEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHH-cCCCCccchhheeeecCcccccccccc
Confidence            344556799999999999998999999999986432    233467777766 799999999999844            


Q ss_pred             --------------------------CCeeEEEEEccCCCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCC
Q 002105          753 --------------------------EKAAYLVYEYIEGKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCS  799 (966)
Q Consensus       753 --------------------------~~~~~lv~Ey~~~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~  799 (966)
                                                +...++||||++ |+|.+.++       .+++.....++.|+++||+|||   +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~  159 (383)
T 3eb0_A           84 DDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH---S  159 (383)
T ss_dssp             --------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---T
T ss_pred             cccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence                                      334889999999 58877774       3899999999999999999999   5


Q ss_pred             CCeEeecCCCCcEEEcCCCCceEEEeccccceec-----CCCCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcC
Q 002105          800 PSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-----DSKSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTG  873 (966)
Q Consensus       800 ~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg  873 (966)
                      .+|+||||||+||+++.+ ...++++|||.+...     .....+|+.|+|||.+.+. .++.++||||+||++|||++|
T Consensus       160 ~gi~H~Dikp~Nil~~~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g  238 (383)
T 3eb0_A          160 LGICHRDIKPQNLLVNSK-DNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILG  238 (383)
T ss_dssp             TTEECSCCCGGGEEEETT-TTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHS
T ss_pred             CcCccCccCHHHEEEcCC-CCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhC
Confidence            699999999999999742 346899999998642     2234678999999988765 489999999999999999999


Q ss_pred             CCCCCCCCCchhhHHHHHHHhhc---------cCcccccccccccCCCcchH-----HHHHHHHHHHHHccCCCCCCCCC
Q 002105          874 KSPADADFGVHESIVEWARYCYS---------DCHLDTWVDPFIRGHVSSIQ-----NEIVEIMNLALHCTAGDPTARPC  939 (966)
Q Consensus       874 ~~p~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~l~~~C~~~~P~~RPt  939 (966)
                      +.||.+... .+.+.+.+...-.         ........-|.....  .+.     ....++.+++.+|++.||++|||
T Consensus       239 ~~pf~~~~~-~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t  315 (383)
T 3eb0_A          239 KPLFSGETS-IDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAK--DWRKILPEGTPSLAIDLLEQILRYEPDLRIN  315 (383)
T ss_dssp             SCSSCCSSH-HHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCC--CHHHHSCTTCCHHHHHHHHHHCCSSGGGSCC
T ss_pred             CCCCCCCCh-HHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcc--cHHhhCCCCCCHHHHHHHHHHccCChhhCCC
Confidence            999976432 2222122211000         000000000100000  000     01134678889999999999999


Q ss_pred             HHHHH
Q 002105          940 ASDVT  944 (966)
Q Consensus       940 ~~~v~  944 (966)
                      +.|++
T Consensus       316 ~~e~l  320 (383)
T 3eb0_A          316 PYEAM  320 (383)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99997

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.7e-33  Score=317.78  Aligned_cols=250  Identities=19%  Similarity=0.279  Sum_probs=180.4

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCC------ee
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK------AA  756 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~------~~  756 (966)
                      +.....+|+|++|.||+|+...+|..||||++.....  ...+.+.+|+..+.+ ++|||||++++++..++      ..
T Consensus        27 y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~-l~hpnIv~l~~~~~~~~~~~~~~~~  105 (367)
T 1cm8_A           27 YRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKH-MRHENVIGLLDVFTPDETLDDFTDF  105 (367)
T ss_dssp             EEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHH-CCBTTBCCCSEEECSCSSTTTCCCC
T ss_pred             EEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHh-CCCcCCCCceeeEecCCccccCceE
Confidence            3455668999999999999988999999999854321  223456788887777 69999999999998753      46


Q ss_pred             EEEEEccCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          757 YLVYEYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       757 ~lv~Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      |+||||+ +++|.++++  .+++.....++.||++||+|||   +.+|+||||||+||+++.+.  .++++|||++....
T Consensus       106 ~lv~e~~-~~~L~~~~~~~~l~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~--~~kl~Dfg~a~~~~  179 (367)
T 1cm8_A          106 YLVMPFM-GTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDC--ELKILDFGLARQAD  179 (367)
T ss_dssp             EEEEECC-SEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTC--CEEECCCTTCEECC
T ss_pred             EEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCHHHEEEcCCC--CEEEEeeecccccc
Confidence            9999999 789999986  4899999999999999999999   45899999999999999754  57899999987543


Q ss_pred             ---CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhcc-------C-----
Q 002105          835 ---SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD-------C-----  898 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-------~-----  898 (966)
                         ....+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+... .+.+..........       .     
T Consensus       180 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~l~~i~~~~g~~~~~~~~~~~~~~~  258 (367)
T 1cm8_A          180 SEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDH-LDQLKEIMKVTGTPPAEFVQRLQSDEA  258 (367)
T ss_dssp             SSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHTCSCHHH
T ss_pred             cccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHhcCCCCHHHHHHhhhHHH
Confidence               33578999999998876 6799999999999999999999999976422 11111111100000       0     


Q ss_pred             -----cccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          899 -----HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       899 -----~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                           ..............+.   ...++.+++.+|++.||++|||++|+++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~mL~~dP~~R~t~~e~l~  307 (367)
T 1cm8_A          259 KNYMKGLPELEKKDFASILTN---ASPLAVNLLEKMLVLDAEQRVTAGEALA  307 (367)
T ss_dssp             HHHHHHSCCCCCCCGGGTCTT---CCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHHHHhCCCCCCCCHHHHCCC---CCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence                 0000000000000011   1135667888999999999999999876

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=1.7e-33  Score=304.97  Aligned_cols=236  Identities=21%  Similarity=0.286  Sum_probs=179.6

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ....+|+|++|.||+|+...+|..||||++....   ....+.+.+|+..+.+ ++||||+++++++..++..++||||+
T Consensus        15 i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~   93 (276)
T 2h6d_A           15 LGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKL-FRHPHIIKLYQVISTPTDFFMVMEYV   93 (276)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHT-CCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             EEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhc-CCCCCEeEEEEEEecCCeEEEEEecc
Confidence            3445688999999999998899999999986432   1223456778777777 79999999999999999999999999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----C
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----S  835 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----~  835 (966)
                      ++++|.+++.   .+++..+..++.|++.||+|||.   .+|+||||||+||+++.+.  .++++|||.+....     .
T Consensus        94 ~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~--~~~l~dfg~~~~~~~~~~~~  168 (276)
T 2h6d_A           94 SGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHR---HMVVHRDLKPENVLLDAHM--NAKIADFGLSNMMSDGEFLR  168 (276)
T ss_dssp             CSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH---HCSSCCCCCGGGEEECTTS--CEEECCCCGGGCCCC-----
T ss_pred             CCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChhhEEECCCC--CEEEeecccccccCCCccee
Confidence            9999999986   48999999999999999999995   4899999999999998654  57899999876432     2


Q ss_pred             CCcCCcccccccccCCCCC-CCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          836 KSINSSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~-~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ...+++.|+|||.+.+..+ +.++||||||+++|||++|+.||....  .....+....   . .      +.+....+ 
T Consensus       169 ~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~--~~~~~~~~~~---~-~------~~~~~~~~-  235 (276)
T 2h6d_A          169 TSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEH--VPTLFKKIRG---G-V------FYIPEYLN-  235 (276)
T ss_dssp             --------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHH---C-C------CCCCTTSC-
T ss_pred             cccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCc--HHHHHHHhhc---C-c------ccCchhcC-
Confidence            3467899999999988765 689999999999999999999987531  1111121111   0 0      00111111 


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                           .++.+++.+|++.||++|||++||++.
T Consensus       236 -----~~l~~li~~~l~~~p~~Rps~~~~l~h  262 (276)
T 2h6d_A          236 -----RSVATLLMHMLQVDPLKRATIKDIREH  262 (276)
T ss_dssp             -----HHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             -----HHHHHHHHHHccCChhhCCCHHHHHhC
Confidence                 246678889999999999999999863

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.7e-33  Score=318.28  Aligned_cols=311  Identities=22%  Similarity=0.211  Sum_probs=197.6

Q ss_pred             CCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceec
Q 002105          227 LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILH  306 (966)
Q Consensus       227 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  306 (966)
                      +++++.|++++|.++...+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            45666666666666543333455666666666666666555555566666666666666666655555555666666666


Q ss_pred             ccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCC
Q 002105          307 LFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEG  386 (966)
Q Consensus       307 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~  386 (966)
                      +++|.++...+..|.++++|++|++++|.+++..|..+..+++|+.|++++|.+++.                       
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------  180 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-----------------------  180 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-----------------------
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-----------------------
Confidence            666666543333445566666666666666555555555555555555555555532                       


Q ss_pred             CCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCccCCCCcCc
Q 002105          387 KIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGS  466 (966)
Q Consensus       387 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  466 (966)
                          .+..+++|+.|++++|.+++.     ...+.|+.|++++|.+......   ..++|+.|++++|.+++. +.+..+
T Consensus       181 ----~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~-~~l~~l  247 (390)
T 3o6n_A          181 ----DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT-AWLLNY  247 (390)
T ss_dssp             ----CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC-GGGGGC
T ss_pred             ----ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc-HHHcCC
Confidence                133445555555555555432     2234566666666666544221   235677777777777653 334456


Q ss_pred             ccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeC
Q 002105          467 DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDL  546 (966)
Q Consensus       467 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdL  546 (966)
                      ++|++|++++|.+++..|..|..+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L  325 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL  325 (390)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred             CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence            777777777787777777778888888888888888765 5666677788888888888887 45666777788888888


Q ss_pred             CCCcCcccCCcccccCCCCCeeeCcCCccccc
Q 002105          547 SENQLSGKIPQTLGRVASLVQVNISHNHFHGS  578 (966)
Q Consensus       547 s~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~  578 (966)
                      ++|+++.. |  +..+++|+.|++++|++.+.
T Consensus       326 ~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          326 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCcccee-C--chhhccCCEEEcCCCCccch
Confidence            88888754 2  56677888888888888764

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=8e-34  Score=327.76  Aligned_cols=235  Identities=21%  Similarity=0.289  Sum_probs=175.6

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCHH
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS  769 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L~  769 (966)
                      .+|+|++|.||++.. .+|..||||++....   .+.+.+|+..+.++.+|||||++++++.+++..|+|||||+ |+|.
T Consensus        22 ~LG~G~~g~V~~~~~-~~g~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-gsL~   96 (434)
T 2rio_A           22 ILGYGSSGTVVFQGS-FQGRPVAVKRMLIDF---CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-LNLQ   96 (434)
T ss_dssp             EEEECSTTCEEEEEE-SSSSEEEEEEEEGGG---HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-EEHH
T ss_pred             eEeeCCCeEEEEEEE-ECCeEEEEEEEcHHH---HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-CCHH
Confidence            468888898987654 789999999986432   23467888888775689999999999999999999999996 6999


Q ss_pred             HHHHcC----------CHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC-----------CCceEEEeccc
Q 002105          770 EVLRNL----------SWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK-----------DEPHLRLSVPG  828 (966)
Q Consensus       770 ~~l~~l----------~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~-----------~~~~~~~~~~~  828 (966)
                      ++++..          ++..+..++.||+.||+|||   +.+|+||||||+|||++.+           ....++++|||
T Consensus        97 ~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG  173 (434)
T 2rio_A           97 DLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFG  173 (434)
T ss_dssp             HHHHTC------------CCHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCT
T ss_pred             HHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCcccccccccCCCceEEEEcccc
Confidence            999642          22234679999999999999   4589999999999999753           34578999999


Q ss_pred             cceecCC----------CCcCCcccccccccCC-------CCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHH
Q 002105          829 LAYCTDS----------KSINSSAYVAPETKES-------KDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEW  890 (966)
Q Consensus       829 ~~~~~~~----------~~~~~~~y~aPE~~~~-------~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~  890 (966)
                      ++.....          ...||++|+|||++.+       ..++.++|||||||++|||+| |+.||........   ..
T Consensus       174 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~---~i  250 (434)
T 2rio_A          174 LCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRES---NI  250 (434)
T ss_dssp             TCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHHH---HH
T ss_pred             cceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhHH---HH
Confidence            9865321          2368999999999865       678999999999999999999 9999865432211   11


Q ss_pred             HHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          891 ARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       891 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ......   ...     ... . .......++.+++.+|++.||++|||+.||++
T Consensus       251 ~~~~~~---~~~-----~~~-~-~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  295 (434)
T 2rio_A          251 IRGIFS---LDE-----MKC-L-HDRSLIAEATDLISQMIDHDPLKRPTAMKVLR  295 (434)
T ss_dssp             HHTCCC---CCC-----CTT-C-CCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             hcCCCC---ccc-----ccc-c-ccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence            111111   000     000 0 01233456778889999999999999999974

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=323.38  Aligned_cols=184  Identities=21%  Similarity=0.394  Sum_probs=145.4

Q ss_pred             cCCCCCccEEEEEEEe--cCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEe--cCCeeEEEEEccCC
Q 002105          690 SRGKKGVSSSYKVRSL--ANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR--SEKAAYLVYEYIEG  765 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~--~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~--~~~~~~lv~Ey~~~  765 (966)
                      .+|+|+||.||+|+..  .++..||||++...  .....+.+|+..+.+ ++|||||++++++.  .+...|+||||++ 
T Consensus        28 ~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~E~~~l~~-l~hpniv~~~~~~~~~~~~~~~lv~e~~~-  103 (405)
T 3rgf_A           28 KVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT--GISMSACREIALLRE-LKHPNVISLQKVFLSHADRKVWLLFDYAE-  103 (405)
T ss_dssp             CCC-----EEEEEEESSSSCCCCEEEEECSSS--SCCHHHHHHHHHHHH-CCCTTBCCCCEEEEETTTTEEEEEEECCS-
T ss_pred             EeeecCCeEEEEEEEccCCCCeEEEEEEECCC--CCCHHHHHHHHHHHh-cCCCCeeeEeeEEecCCCCeEEEEEeCCC-
Confidence            4799999999999964  46789999987533  223457788888877 69999999999995  4678999999998 


Q ss_pred             CCHHHHHH------------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcC--CCCceEEEeccccce
Q 002105          766 KELSEVLR------------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDG--KDEPHLRLSVPGLAY  831 (966)
Q Consensus       766 g~L~~~l~------------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~--~~~~~~~~~~~~~~~  831 (966)
                      |+|.+++.            .+++..+..++.||+.||+|||.   .+|+||||||+|||++.  +....++++|||++.
T Consensus       104 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~  180 (405)
T 3rgf_A          104 HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERGRVKIADMGFAR  180 (405)
T ss_dssp             EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC
T ss_pred             CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCEeCCCcCHHHeEEecCCCCCCcEEEEECCCce
Confidence            58888774            28999999999999999999994   58999999999999943  234578999999986


Q ss_pred             ecC---------CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          832 CTD---------SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       832 ~~~---------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                      ...         ....||+.|+|||++.+ ..++.++|||||||++|||+||+.||.+.
T Consensus       181 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  239 (405)
T 3rgf_A          181 LFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  239 (405)
T ss_dssp             ----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred             ecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence            422         23468999999999877 45899999999999999999999999754

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=9.9e-34  Score=309.23  Aligned_cols=242  Identities=18%  Similarity=0.230  Sum_probs=178.9

Q ss_pred             ccccccCCCCCccEEEEEEEec-CCc--EEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLA-NDM--QFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL  758 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~-~~~--~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~l  758 (966)
                      +.....+|+|++|.||+|+... ++.  .||||++....   ....+.+.+|+..+.+ ++|||||++++++..++ .++
T Consensus        20 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~-~~~   97 (291)
T 1u46_A           20 LRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS-LDHRNLIRLYGVVLTPP-MKM   97 (291)
T ss_dssp             EEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHH-CCCTTBCCEEEEECSSS-CEE
T ss_pred             eeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHh-CCCCCcccEEEEEccCC-cee
Confidence            3455667999999999998643 333  58999875432   2223467788888877 69999999999998765 899


Q ss_pred             EEEccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          759 VYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      ||||+++|+|.+++.    .+++..+..++.|+++||+|||.   .+|+||||||+||+++.+  ..++++|||.+....
T Consensus        98 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nili~~~--~~~kl~Dfg~~~~~~  172 (291)
T 1u46_A           98 VTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATR--DLVKIGDFGLMRALP  172 (291)
T ss_dssp             EEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEET--TEEEECCCTTCEECC
T ss_pred             eEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchheEEEcCC--CCEEEcccccccccc
Confidence            999999999999985    38999999999999999999994   589999999999999865  468899999876432


Q ss_pred             ---------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccc
Q 002105          835 ---------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWV  904 (966)
Q Consensus       835 ---------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  904 (966)
                               ....+|+.|+|||+..+..++.++||||||+++|||+| |+.||....  ........   .....     
T Consensus       173 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~--~~~~~~~~---~~~~~-----  242 (291)
T 1u46_A          173 QNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLN--GSQILHKI---DKEGE-----  242 (291)
T ss_dssp             C-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCC--HHHHHHHH---HTSCC-----
T ss_pred             ccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCC--HHHHHHHH---HccCC-----
Confidence                     12346778999999988889999999999999999999 999987542  11111111   11110     


Q ss_pred             cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          905 DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       905 d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      .+......+      .++.+++.+|++.||++|||+.++++.|++
T Consensus       243 ~~~~~~~~~------~~l~~li~~~l~~~p~~Rps~~~l~~~l~~  281 (291)
T 1u46_A          243 RLPRPEDCP------QDIYNVMVQCWAHKPEDRPTFVALRDFLLE  281 (291)
T ss_dssp             CCCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             CCCCCcCcC------HHHHHHHHHHccCCcccCcCHHHHHHHHHH
Confidence            000111122      356678889999999999999999999998

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=9.1e-34  Score=324.07  Aligned_cols=256  Identities=14%  Similarity=0.201  Sum_probs=186.4

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcC--------CCceeEEeeEEe----c
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM--------HPNIVRLHGVCR----S  752 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~--------H~niv~l~g~~~----~  752 (966)
                      +.....+|+|++|.||+|+...++..||||++... ....+.+.+|+..+.+ ++        |||||++++++.    .
T Consensus        39 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~-l~~~~~~~~~~~~iv~~~~~~~~~~~~  116 (397)
T 1wak_A           39 YHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKS-VRNSDPNDPNREMVVQLLDDFKISGVN  116 (397)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHH-HHHSCTTCGGGGGBCCEEEEEEEEETT
T ss_pred             EEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHH-HhhcCCCCCCcceeeeeecceeecCCC
Confidence            34555679999999999999888999999998532 2233457778877776 34        888999999997    5


Q ss_pred             CCeeEEEEEccCCCCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC---------
Q 002105          753 EKAAYLVYEYIEGKELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD---------  818 (966)
Q Consensus       753 ~~~~~lv~Ey~~~g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~---------  818 (966)
                      ....++||||+ +|++.+++.     .+++..+..++.||+.||+|||..+  +|+||||||+|||++.+.         
T Consensus       117 ~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~~~~~~  193 (397)
T 1wak_A          117 GTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRRLAAE  193 (397)
T ss_dssp             EEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHHHHHHH
T ss_pred             CceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhhhhhhh
Confidence            56899999999 556666553     3899999999999999999999432  899999999999998653         


Q ss_pred             --------------------------------------CceEEEeccccceec---CCCCcCCcccccccccCCCCCCCc
Q 002105          819 --------------------------------------EPHLRLSVPGLAYCT---DSKSINSSAYVAPETKESKDITEK  857 (966)
Q Consensus       819 --------------------------------------~~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~  857 (966)
                                                            ...++++|||.+...   .....||+.|+|||++.+..++.+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  273 (397)
T 1wak_A          194 ATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTP  273 (397)
T ss_dssp             HC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHHTSCCCTH
T ss_pred             hHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccCccCCCCCcccCChhhcCCCCCcH
Confidence                                                  126899999998653   234578999999999999999999


Q ss_pred             chHHHHHHHHHHHHcCCCCCCCCCCch----hhHHHHHHHhhccC---------cccccccc----------c-------
Q 002105          858 GDIYGFGLILIDLLTGKSPADADFGVH----ESIVEWARYCYSDC---------HLDTWVDP----------F-------  907 (966)
Q Consensus       858 ~Dv~S~Gv~l~el~tg~~p~~~~~~~~----~~~~~~~~~~~~~~---------~~~~~~d~----------~-------  907 (966)
                      +|||||||++|||+||+.||.......    ..............         ....+...          .       
T Consensus       274 ~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (397)
T 1wak_A          274 ADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEV  353 (397)
T ss_dssp             HHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHh
Confidence            999999999999999999997543211    00001111000000         00000000          0       


Q ss_pred             ccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       908 ~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +........+...++.+++.+|++.||++|||++||++
T Consensus       354 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  391 (397)
T 1wak_A          354 LVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR  391 (397)
T ss_dssp             HHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred             hhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence            00001112344567888999999999999999999875

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=2.1e-33  Score=317.79  Aligned_cols=253  Identities=17%  Similarity=0.220  Sum_probs=180.9

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCC------ee
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK------AA  756 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~------~~  756 (966)
                      +.....+|+|++|.||+|+...++..||||++....  ....+.+.+|+..+.+ ++|||||++++++...+      ..
T Consensus        27 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~hpniv~~~~~~~~~~~~~~~~~~  105 (371)
T 2xrw_A           27 YQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKC-VNHKNIIGLLNVFTPQKSLEEFQDV  105 (371)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHH-CCCTTBCCEEEEECSCCSTTTCCEE
T ss_pred             eeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHh-cCCCCccceEEeeccccccccccce
Confidence            345566799999999999998899999999986532  1223456778877776 79999999999998654      78


Q ss_pred             EEEEEccCCCCHHHHHH-cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-
Q 002105          757 YLVYEYIEGKELSEVLR-NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       757 ~lv~Ey~~~g~L~~~l~-~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-  834 (966)
                      |+||||+++ +|.++++ .+++.....++.||+.||+|||   +.+|+||||||+||+++.+.  .++++|||++.... 
T Consensus       106 ~lv~e~~~~-~l~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIl~~~~~--~~kl~Dfg~a~~~~~  179 (371)
T 2xrw_A          106 YIVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDC--TLKILDFGLARTAGT  179 (371)
T ss_dssp             EEEEECCSE-EHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTS--CEEECCCCC------
T ss_pred             EEEEEcCCC-CHHHHHhhccCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCC--CEEEEEeeccccccc
Confidence            999999984 7888776 5899999999999999999999   45899999999999999654  57899999986432 


Q ss_pred             ----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHH-----------------
Q 002105          835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARY-----------------  893 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~-----------------  893 (966)
                          ....||+.|+|||++.+..++.++|||||||++|||+||+.||.+... .+........                 
T Consensus       180 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~  258 (371)
T 2xrw_A          180 SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH-IDQWNKVIEQLGTPCPEFMKKLQPTVR  258 (371)
T ss_dssp             ----------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHC-CCCCCHHHHTTSCHHHH
T ss_pred             ccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHHHHHhhhHHH
Confidence                234689999999999999999999999999999999999999975421 1111000000                 


Q ss_pred             -hhcc-Cc-----ccccccccccCCCc-chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          894 -CYSD-CH-----LDTWVDPFIRGHVS-SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       894 -~~~~-~~-----~~~~~d~~~~~~~~-~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       .... ..     .............. .......++.+++.+|++.||++|||++|+++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  318 (371)
T 2xrw_A          259 TYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ  318 (371)
T ss_dssp             HHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence             0000 00     00000000000000 01122456788999999999999999999975

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=3.2e-33  Score=306.37  Aligned_cols=241  Identities=20%  Similarity=0.277  Sum_probs=185.7

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc---------cccchHHHHHHHHhhcCCCceeEEeeEEecCCee
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI---------TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAA  756 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~---------~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~  756 (966)
                      .....+|+|++|.||+|+...+|..||||.+......         ..+.+.+|+..+.++..||||+++++++..++..
T Consensus        20 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~   99 (298)
T 1phk_A           20 EPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFF   99 (298)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             ceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeeccCCeE
Confidence            3445578899999999999889999999998654311         1234677888887743599999999999999999


Q ss_pred             EEEEEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec
Q 002105          757 YLVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT  833 (966)
Q Consensus       757 ~lv~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~  833 (966)
                      ++||||+++|+|.++++   .+++..+..++.|++.||+|||   ..+|+||||||+||+++.+.  .+++.|||.+...
T Consensus       100 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~--~~kl~dfg~~~~~  174 (298)
T 1phk_A          100 FLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDM--NIKLTDFGFSCQL  174 (298)
T ss_dssp             EEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTC--CEEECCCTTCEEC
T ss_pred             EEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEcCCC--cEEEecccchhhc
Confidence            99999999999999996   4899999999999999999999   45899999999999998654  4789999987653


Q ss_pred             C-----CCCcCCcccccccccC------CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccc
Q 002105          834 D-----SKSINSSAYVAPETKE------SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDT  902 (966)
Q Consensus       834 ~-----~~~~~~~~y~aPE~~~------~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  902 (966)
                      .     ....+++.|+|||++.      ...++.++||||||+++|||++|+.||....  ........   ... ... 
T Consensus       175 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~--~~~~~~~~---~~~-~~~-  247 (298)
T 1phk_A          175 DPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK--QMLMLRMI---MSG-NYQ-  247 (298)
T ss_dssp             CTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHH---HHT-CCC-
T ss_pred             CCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCcc--HHHHHHHH---hcC-Ccc-
Confidence            2     2346899999999874      5568999999999999999999999986532  11111111   111 000 


Q ss_pred             cccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          903 WVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       903 ~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ...+.. ..+      ..++.+++.+|++.||++|||+.|+++
T Consensus       248 ~~~~~~-~~~------~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (298)
T 1phk_A          248 FGSPEW-DDY------SDTVKDLVSRFLVVQPQKRYTAEEALA  283 (298)
T ss_dssp             CCTTTG-GGS------CHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             cCcccc-ccc------CHHHHHHHHHHccCCcccCCCHHHHHh
Confidence            011111 011      135667888999999999999999875

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=3.8e-33  Score=314.93  Aligned_cols=252  Identities=19%  Similarity=0.273  Sum_probs=185.1

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc-cccchHHHHHHHHhhcCCCceeEEeeEEecC-----CeeEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE-----KAAYL  758 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~-----~~~~l  758 (966)
                      +.....+|+|++|.||+|+...++..||||++...... ..+.+.+|+..+.+ ++|||||++++++...     ...|+
T Consensus        29 y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~~~~~~i  107 (364)
T 3qyz_A           29 YTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLR-FRHENIIGINDIIRAPTIEQMKDVYI  107 (364)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHH-CCCTTBCCCCEEECCSSTTTCCCEEE
T ss_pred             EEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHh-cCCCCCccceeEEecCCccccceEEE
Confidence            44556679999999999999889999999998643322 23557788888877 6999999999999764     46899


Q ss_pred             EEEccCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          759 VYEYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      ||||++ |+|.++++  .+++..+..++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||.+....  
T Consensus       108 v~e~~~-~~L~~~l~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~--~~kl~Dfg~a~~~~~~  181 (364)
T 3qyz_A          108 VQDLME-TDLYKLLKTQHLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTC--DLKICDFGLARVADPD  181 (364)
T ss_dssp             EEECCS-EEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTC--CEEECCCTTCEECCGG
T ss_pred             EEcccC-cCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChHhEEECCCC--CEEEEeCcceEecCCC
Confidence            999998 59999986  4899999999999999999999   45899999999999998654  47899999886422  


Q ss_pred             -------CCCcCCcccccccccC-CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccc---c-
Q 002105          835 -------SKSINSSAYVAPETKE-SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLD---T-  902 (966)
Q Consensus       835 -------~~~~~~~~y~aPE~~~-~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~-  902 (966)
                             ....||+.|+|||++. ...++.++|||||||++|||+||+.||.+.... +.+..... .......+   . 
T Consensus       182 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~~~~i~~-~~~~~~~~~~~~~  259 (364)
T 3qyz_A          182 HDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYL-DQLNHILG-ILGSPSQEDLNCI  259 (364)
T ss_dssp             GCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGG-GHHHHHHH-HHCSCCHHHHHTC
T ss_pred             CCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChH-HHHHHHHH-HhCCCCHHHHHHh
Confidence                   2347899999999865 455899999999999999999999999764321 11111111 00000000   0 


Q ss_pred             -------cccccccCCCcchH----HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          903 -------WVDPFIRGHVSSIQ----NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       903 -------~~d~~~~~~~~~~~----~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                             +.............    ....++.+++.+|++.||++|||++|+++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  313 (364)
T 3qyz_A          260 INLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA  313 (364)
T ss_dssp             CCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence                   00000000000000    01135677889999999999999999975

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=3.1e-33  Score=322.76  Aligned_cols=187  Identities=17%  Similarity=0.281  Sum_probs=155.8

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecC-----CeeE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE-----KAAY  757 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~-----~~~~  757 (966)
                      +.....+|+|++|.||+|+...++..||||++....  ....+.+.+|+..+.+ ++|||||++++++...     +..|
T Consensus        28 y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~nIv~l~~~~~~~~~~~~~~~~  106 (432)
T 3n9x_A           28 YIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNR-LKSDYIIRLYDLIIPDDLLKFDELY  106 (432)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHH-CCCTTBCCEEEECCCSCTTTCCCEE
T ss_pred             EEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHH-cCCCCcceEEEEEecCCCCcCCeEE
Confidence            344556799999999999998899999999986432  2233567788888877 6999999999999776     5789


Q ss_pred             EEEEccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          758 LVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      +||||++ |+|.++++.   +++.....++.||++||+|||   +.+|+||||||+|||++.+.  .++++|||++....
T Consensus       107 lv~e~~~-~~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH---~~givHrDlkp~NILl~~~~--~~kL~DFGla~~~~  180 (432)
T 3n9x_A          107 IVLEIAD-SDLKKLFKTPIFLTEEHIKTILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDC--SVKVCDFGLARTIN  180 (432)
T ss_dssp             EEEECCS-EEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTC--CEEECCCTTCEEC-
T ss_pred             EEEecCC-cCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHeEECCCC--CEEEccCCCccccc
Confidence            9999998 599999974   899999999999999999999   45899999999999998654  57999999986421


Q ss_pred             ----------------------------CCCcCCccccccccc-CCCCCCCcchHHHHHHHHHHHHcCCCCCC
Q 002105          835 ----------------------------SKSINSSAYVAPETK-ESKDITEKGDIYGFGLILIDLLTGKSPAD  878 (966)
Q Consensus       835 ----------------------------~~~~~~~~y~aPE~~-~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~  878 (966)
                                                  ...+||+.|+|||++ ....|+.++||||+||++|||+||..|+.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~  253 (432)
T 3n9x_A          181 SEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI  253 (432)
T ss_dssp             ------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred             ccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence                                        334689999999985 56679999999999999999998655543

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=2.7e-33  Score=305.30  Aligned_cols=242  Identities=21%  Similarity=0.338  Sum_probs=187.5

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      +.....+|+|++|.||+|+...++..||+|++....  ....+.+.+|+..+.+ ++||||+++++++..++..++||||
T Consensus        24 y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~  102 (287)
T 2wei_A           24 YNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKK-LDHPNIMKLFEILEDSSSFYIVGEL  102 (287)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHT-CCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             ceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHh-ccCCCccEEEEEEeCCCeEEEEEEc
Confidence            344556789999999999998889999999986532  2234457788888877 6999999999999999999999999


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC-CceEEEeccccceecCC---
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAYCTDS---  835 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~-~~~~~~~~~~~~~~~~~---  835 (966)
                      +++++|.+++.   .+++.++..++.|++.||+|||.   .+|+||||||+||+++.+. ...++++|||.+.....   
T Consensus       103 ~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~  179 (287)
T 2wei_A          103 YTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK  179 (287)
T ss_dssp             CCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSS
T ss_pred             cCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCChhhEEEecCCCcccEEEeccCcceeecCCCc
Confidence            99999999885   48999999999999999999994   5899999999999998643 35689999998764322   


Q ss_pred             --CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          836 --KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       836 --~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                        ...+++.|+|||.+.+ .++.++||||||+++|||+||+.||....  ...+.+.+.   .. ...  .+.......+
T Consensus       180 ~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~--~~~~~~~~~---~~-~~~--~~~~~~~~~~  250 (287)
T 2wei_A          180 MKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKN--EYDILKRVE---TG-KYA--FDLPQWRTIS  250 (287)
T ss_dssp             CSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHH---HC-CCC--CCSGGGTTSC
T ss_pred             cccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCC--HHHHHHHHH---cC-CCC--CCchhhhhcC
Confidence              2246788999998876 48999999999999999999999987532  111111111   11 100  0000001111


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                            .++.+++.+|++.||++|||+.|+++
T Consensus       251 ------~~~~~li~~~l~~dp~~Rps~~ell~  276 (287)
T 2wei_A          251 ------DDAKDLIRKMLTFHPSLRITATQCLE  276 (287)
T ss_dssp             ------HHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ------HHHHHHHHHHcccChhhCcCHHHHhc
Confidence                  24667888999999999999999986

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.4e-32  Score=306.39  Aligned_cols=307  Identities=21%  Similarity=0.370  Sum_probs=176.8

Q ss_pred             ccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCE
Q 002105           81 IFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKV  160 (966)
Q Consensus        81 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  160 (966)
                      +..+++|++|++++|.+. .+|.  +..+++|++|+|++|.+++..++..+++|++|+|++|.++. + +.+..+++|++
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~  114 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-I-SALQNLTNLRE  114 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSE
T ss_pred             chhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-c-hHHcCCCcCCE
Confidence            345667777777777776 4553  45567777777777777765456677777777777777764 2 34667777777


Q ss_pred             EEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccc
Q 002105          161 LDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNL  240 (966)
Q Consensus       161 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  240 (966)
                      |++++|.+.+..+  +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+
T Consensus       115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l  189 (347)
T 4fmz_A          115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI  189 (347)
T ss_dssp             EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred             EECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence            7777777664332  6666667777776665443333 25666666666666666653322  55666666666666665


Q ss_pred             cccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCC
Q 002105          241 TGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSL  320 (966)
Q Consensus       241 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l  320 (966)
                      .+. +. +..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|.+++.  ..+
T Consensus       190 ~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~  261 (347)
T 4fmz_A          190 EDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAV  261 (347)
T ss_dssp             CCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGG
T ss_pred             ccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhH
Confidence            532 22 5555666666666666554322  5555666666666665554322  45555555555555555432  234


Q ss_pred             CCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCce
Q 002105          321 ASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRR  400 (966)
Q Consensus       321 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~  400 (966)
                      ..+++|+.|++++|.+++.  ..+..+++|+.|++++|.                        +++..|..+..+++|++
T Consensus       262 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~------------------------l~~~~~~~l~~l~~L~~  315 (347)
T 4fmz_A          262 KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQ------------------------LGNEDMEVIGGLTNLTT  315 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC------------------------CCGGGHHHHHTCTTCSE
T ss_pred             hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCc------------------------CCCcChhHhhccccCCE
Confidence            4555555555555555432  234444444444444444                        44444444555556666


Q ss_pred             eeccccccCCcCChhhcCCCcccEEcccCCCCC
Q 002105          401 VRLQNNRLSGELSSEFTRLPLVYFLDISGNDLS  433 (966)
Q Consensus       401 L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~  433 (966)
                      |++++|++++..|  +..+++|++||+++|.++
T Consensus       316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EEccCCccccccC--hhhhhccceeehhhhccc
Confidence            6666666655544  555666666666666653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.7e-32  Score=305.97  Aligned_cols=305  Identities=23%  Similarity=0.307  Sum_probs=167.2

Q ss_pred             cCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEc
Q 002105          108 SSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL  187 (966)
Q Consensus       108 ~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  187 (966)
                      .+++|++|++++|.+.....+..+++|++|++++|.+++. +. +..+++|++|++++|.+.. +| .+.++++|++|++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l  117 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYL  117 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred             hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEEC
Confidence            3466677777766665433345566666666666666543 22 5666666666666665553 22 3555566666666


Q ss_pred             cCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCC
Q 002105          188 ASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGS  267 (966)
Q Consensus       188 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  267 (966)
                      ++|.+.+..+  +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.
T Consensus       118 ~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~  192 (347)
T 4fmz_A          118 NEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI  192 (347)
T ss_dssp             TTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred             cCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence            6655553222  5555555555555554332222 24555555555555555443221  44445555555555544432


Q ss_pred             CChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCC
Q 002105          268 IPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQ  347 (966)
Q Consensus       268 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~  347 (966)
                      .+  +..+++|+.|++++|.++                        +..+  +..+++|+.|++++|.+++..+  +..+
T Consensus       193 ~~--~~~l~~L~~L~l~~n~l~------------------------~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l  242 (347)
T 4fmz_A          193 SP--LASLTSLHYFTAYVNQIT------------------------DITP--VANMTRLNSLKIGNNKITDLSP--LANL  242 (347)
T ss_dssp             GG--GGGCTTCCEEECCSSCCC------------------------CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred             cc--ccCCCccceeecccCCCC------------------------CCch--hhcCCcCCEEEccCCccCCCcc--hhcC
Confidence            11  444444444444444444                        3222  3444445555555554443222  4444


Q ss_pred             CCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcc
Q 002105          348 NNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDI  427 (966)
Q Consensus       348 ~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdL  427 (966)
                      ++|+.|++++|.+++.  ..+..+++|+.|++++|++++.  ..+..+++|+.|++++|++++..+..|..+++|++|++
T Consensus       243 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  318 (347)
T 4fmz_A          243 SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL  318 (347)
T ss_dssp             TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred             CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence            5555555555554432  2344444555555555555443  34667778888888888887777777777888888888


Q ss_pred             cCCCCCCccCcchhccCCCcEecCCCCcCC
Q 002105          428 SGNDLSGRIGEQKWEMTSLQMLNLAGNNFS  457 (966)
Q Consensus       428 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  457 (966)
                      ++|++++..|  +..+++|++|++++|.|+
T Consensus       319 ~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          319 SQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cCCccccccC--hhhhhccceeehhhhccc
Confidence            8888777655  666777777777777664

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.7e-33  Score=309.27  Aligned_cols=238  Identities=17%  Similarity=0.254  Sum_probs=181.1

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEec------CCeeEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS------EKAAYLV  759 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~------~~~~~lv  759 (966)
                      .....+|+|++|.||+|+...++..||||++.... ...+.+.+|+..+.++.+||||+++++++..      .+..++|
T Consensus        27 ~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~~lv  105 (326)
T 2x7f_A           27 ELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLV  105 (326)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCEEEEE
T ss_pred             EEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccceEEEE
Confidence            44556789999999999998899999999885432 3345688888888885589999999999986      4688999


Q ss_pred             EEccCCCCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          760 YEYIEGKELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      |||+++|+|.++++     .+++.....++.||+.||+|||.   .+|+||||||+||+++.+.  .+++.|||.+....
T Consensus       106 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~--~~kl~Dfg~~~~~~  180 (326)
T 2x7f_A          106 MEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQ---HKVIHRDIKGQNVLLTENA--EVKLVDFGVSAQLD  180 (326)
T ss_dssp             EECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTC--CEEECCCTTTC---
T ss_pred             EEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCcHHHEEEcCCC--CEEEeeCcCceecC
Confidence            99999999999996     38899999999999999999994   5899999999999998654  47899999875422


Q ss_pred             ------CCCcCCcccccccccC-----CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccc
Q 002105          835 ------SKSINSSAYVAPETKE-----SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTW  903 (966)
Q Consensus       835 ------~~~~~~~~y~aPE~~~-----~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  903 (966)
                            ....||+.|+|||++.     +..++.++|||||||++|||+||+.||..... ........    .. .... 
T Consensus       181 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-~~~~~~~~----~~-~~~~-  253 (326)
T 2x7f_A          181 RTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHP-MRALFLIP----RN-PAPR-  253 (326)
T ss_dssp             ----------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCH-HHHHHHHH----HS-CCCC-
T ss_pred             cCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcH-HHHHHHhh----cC-cccc-
Confidence                  2346899999999986     56789999999999999999999999864321 11111111    11 0000 


Q ss_pred             ccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          904 VDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       904 ~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         .....++      .++.+++.+||+.||++|||++|+++
T Consensus       254 ---~~~~~~~------~~l~~li~~~l~~dp~~Rps~~~ll~  286 (326)
T 2x7f_A          254 ---LKSKKWS------KKFQSFIESCLVKNHSQRPATEQLMK  286 (326)
T ss_dssp             ---CSCSCSC------HHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             ---CCccccC------HHHHHHHHHHhccChhhCCCHHHHhh
Confidence               0111122      24667788999999999999999875

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=312.29  Aligned_cols=240  Identities=21%  Similarity=0.270  Sum_probs=182.5

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .....+|+|++|.||+|+..   ..+|+|++....  ....+.+.+|+..+.+ ++|||||++++++.+++..++||||+
T Consensus        36 ~~~~~lg~G~~g~V~~~~~~---~~~avk~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~iv~e~~  111 (319)
T 2y4i_B           36 EIGELIGKGRFGQVYHGRWH---GEVAIRLIDIERDNEDQLKAFKREVMAYRQ-TRHENVVLFMGACMSPPHLAIITSLC  111 (319)
T ss_dssp             ECCCBCCCSSSSEEEEEEES---SSEEEEECCCCSCCCCCCCCCCTTGGGGTT-CCCTTBCCCCEEEECSSCEEEECBCC
T ss_pred             EEeeEeccCCceEEEEEEEc---CeEEEEEeecCCCCHHHHHHHHHHHHHHhc-CCCCCEeEEEEEEecCCceEEEeecc
Confidence            44556799999999999873   248999875432  2334567788877777 69999999999999999999999999


Q ss_pred             CCCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------
Q 002105          764 EGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------  833 (966)
Q Consensus       764 ~~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------  833 (966)
                      ++|+|.++++.    +++..+..++.|++.||+|||.   .+|+||||||+||++++   ..++++|||.+...      
T Consensus       112 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dlkp~NIl~~~---~~~~l~Dfg~~~~~~~~~~~  185 (319)
T 2y4i_B          112 KGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHA---KGILHKDLKSKNVFYDN---GKVVITDFGLFSISGVLQAG  185 (319)
T ss_dssp             CSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHH---TTCCCCCCCSTTEEEC-----CCEECCCSCCC--------
T ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCChhhEEEeC---CCEEEeecCCcccccccccc
Confidence            99999999963    8899999999999999999994   58999999999999984   35688999975431      


Q ss_pred             -----CCCCcCCcccccccccCC---------CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCc
Q 002105          834 -----DSKSINSSAYVAPETKES---------KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCH  899 (966)
Q Consensus       834 -----~~~~~~~~~y~aPE~~~~---------~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  899 (966)
                           .....|++.|+|||.+..         ..++.++|||||||++|||+||+.||....  .+......   ...  
T Consensus       186 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~--~~~~~~~~---~~~--  258 (319)
T 2y4i_B          186 RREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQP--AEAIIWQM---GTG--  258 (319)
T ss_dssp             --CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCC--HHHHHHHH---HTT--
T ss_pred             ccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHh---ccC--
Confidence                 112347889999998864         457889999999999999999999987532  11111111   111  


Q ss_pred             cccccccccc-CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          900 LDTWVDPFIR-GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       900 ~~~~~d~~~~-~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                          ..|... ...+      .++.+++.+||+.||++|||++||+++|+++.+
T Consensus       259 ----~~~~~~~~~~~------~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~  302 (319)
T 2y4i_B          259 ----MKPNLSQIGMG------KEISDILLFCWAFEQEERPTFTKLMDMLEKLPK  302 (319)
T ss_dssp             ----CCCCCCCSSCC------TTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC--
T ss_pred             ----CCCCCCcCCCC------HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence                111111 1111      146678889999999999999999999998443

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=1.1e-33  Score=314.54  Aligned_cols=243  Identities=18%  Similarity=0.264  Sum_probs=167.2

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .....+|+|++|.||+|+...+|..||||++..... ....++..|+..+.+.++|||||+++|++..++..++||||++
T Consensus        25 ~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e~~~  104 (327)
T 3aln_A           25 KDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMS  104 (327)
T ss_dssp             EC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEECCCS
T ss_pred             hehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEeecC
Confidence            345567899999999999988999999999865422 2334566777766666899999999999999999999999999


Q ss_pred             CCCHHHHHH--------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          765 GKELSEVLR--------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       765 ~g~L~~~l~--------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      + +|.+++.        .+++..+..++.|++.||+|||..  .+|+||||||+||+++.+  ..++++|||.+....  
T Consensus       105 ~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~--~~~kl~Dfg~~~~~~~~  179 (327)
T 3aln_A          105 T-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRS--GNIKLCDFGISGQLVDS  179 (327)
T ss_dssp             E-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETT--TEEEECCCSSSCC----
T ss_pred             C-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCC--CCEEEccCCCceecccc
Confidence            5 8877764        378999999999999999999942  289999999999999865  468999999875422  


Q ss_pred             ---CCCcCCccccccccc----CCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccc
Q 002105          835 ---SKSINSSAYVAPETK----ESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF  907 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~----~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  907 (966)
                         ....||+.|+|||++    .+..++.++|||||||++|||+||+.||.......    +....... ..... +...
T Consensus       180 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~----~~~~~~~~-~~~~~-~~~~  253 (327)
T 3aln_A          180 IAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF----DQLTQVVK-GDPPQ-LSNS  253 (327)
T ss_dssp             --------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-----------CCCCC-SCCCC-CCCC
T ss_pred             cccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHH----HHHHHHhc-CCCCC-CCCc
Confidence               223688999999998    56678999999999999999999999987532111    11110010 00000 0000


Q ss_pred             ccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       908 ~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .....+      .++.+++.+||+.||++|||+.||++
T Consensus       254 ~~~~~~------~~l~~li~~~l~~dp~~Rps~~ell~  285 (327)
T 3aln_A          254 EEREFS------PSFINFVNLCLTKDESKRPKYKELLK  285 (327)
T ss_dssp             SSCCCC------HHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             ccccCC------HHHHHHHHHHhhCChhhCcCHHHHHh
Confidence            011111      25667888999999999999999864

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=1.3e-33  Score=316.75  Aligned_cols=253  Identities=14%  Similarity=0.217  Sum_probs=187.6

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccc-----------------cchHHHHHHHHhhcCCCceeEEe
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITT-----------------SSFWPDVSQFGKLIMHPNIVRLH  747 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~-----------------~~~~~e~~~~~~~~~H~niv~l~  747 (966)
                      +.....+|+|++|.||+|+.  +|..||||++........                 +.+.+|+..+.+ ++|||||+++
T Consensus        33 y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~  109 (348)
T 2pml_X           33 YRIIRTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITD-IKNEYCLTCE  109 (348)
T ss_dssp             EEEEEEEECCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTT-CCCTTBCCCS
T ss_pred             eEEEEEEcCCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHh-CCCCCcceEE
Confidence            34455678999999999997  899999999864322111                 567888888877 6999999999


Q ss_pred             eEEecCCeeEEEEEccCCCCHHHH------HH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcC
Q 002105          748 GVCRSEKAAYLVYEYIEGKELSEV------LR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDG  816 (966)
Q Consensus       748 g~~~~~~~~~lv~Ey~~~g~L~~~------l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~  816 (966)
                      +++.+++..++||||+++|+|.++      ++     .+++..+..++.|++.||+|||.  ..+|+||||||+||+++.
T Consensus       110 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~--~~~i~H~dl~p~Nil~~~  187 (348)
T 2pml_X          110 GIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHN--EKNICHRDVKPSNILMDK  187 (348)
T ss_dssp             EEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHH--TSCEECCCCCGGGEEECT
T ss_pred             EEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhc--cCCEeecCCChHhEEEcC
Confidence            999999999999999999999998      53     38899999999999999999995  159999999999999986


Q ss_pred             CCCceEEEeccccceecC----CCCcCCcccccccccCCC-CCCC-cchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHH
Q 002105          817 KDEPHLRLSVPGLAYCTD----SKSINSSAYVAPETKESK-DITE-KGDIYGFGLILIDLLTGKSPADADFGVHESIVEW  890 (966)
Q Consensus       817 ~~~~~~~~~~~~~~~~~~----~~~~~~~~y~aPE~~~~~-~~~~-~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~  890 (966)
                      +.  .++++|||.+....    ....+++.|+|||...+. .++. ++|||||||++|||+||+.||.......+.. +.
T Consensus       188 ~~--~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~-~~  264 (348)
T 2pml_X          188 NG--RVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELF-NN  264 (348)
T ss_dssp             TS--CEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHHH-HH
T ss_pred             CC--cEEEeccccccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHH-HH
Confidence            54  57899999886532    345689999999999877 6766 9999999999999999999997643322222 22


Q ss_pred             HHHhhccC--cccccccccccCCCcc-hHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          891 ARYCYSDC--HLDTWVDPFIRGHVSS-IQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       891 ~~~~~~~~--~~~~~~d~~~~~~~~~-~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ........  ....+..+........ ......++.+++.+|++.||++|||++|+++
T Consensus       265 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          265 IRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK  322 (348)
T ss_dssp             HTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             HhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            11110000  0000111111000000 0011235677888999999999999999975

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.2e-33  Score=321.68  Aligned_cols=235  Identities=20%  Similarity=0.248  Sum_probs=174.8

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|+|++|.||... ..+++.||||++....   .+.+.+|+..+.++.+|||||++++++.+++..|+|||||+ |
T Consensus        28 ~~~~LG~G~~G~V~~~~-~~~~~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~-g  102 (432)
T 3p23_A           28 PKDVLGHGAEGTIVYRG-MFDNRDVAVKRILPEC---FSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA-A  102 (432)
T ss_dssp             EEEEEEECGGGCEEEEE-ESSSSEEEEEEECTTT---EEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS-E
T ss_pred             cCCeeecCcCEEEEEEE-EeCCeEEEEEEECHHH---HHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC-C
Confidence            33457888999876544 4789999999985422   23467888888774489999999999999999999999997 6


Q ss_pred             CHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcC---CCCceEEEeccccceecC-----
Q 002105          767 ELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDG---KDEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       767 ~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~---~~~~~~~~~~~~~~~~~~-----  834 (966)
                      +|.+++..    ..+.....++.||++||+|||.   .+|+||||||+||+++.   +...+++++|||++....     
T Consensus       103 ~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~  179 (432)
T 3p23_A          103 TLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHS---LNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHS  179 (432)
T ss_dssp             EHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHH---TTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------
T ss_pred             CHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHH---CcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcc
Confidence            99999964    4455677899999999999994   58999999999999953   344567899999986422     


Q ss_pred             ----CCCcCCcccccccccC---CCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccc
Q 002105          835 ----SKSINSSAYVAPETKE---SKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDP  906 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~---~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  906 (966)
                          ....||+.|+|||++.   ...++.++|||||||++|||+| |+.||.......      ............ ..+
T Consensus       180 ~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~------~~~~~~~~~~~~-~~~  252 (432)
T 3p23_A          180 FSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQ------ANILLGACSLDC-LHP  252 (432)
T ss_dssp             ------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHH------HHHHTTCCCCTT-SCT
T ss_pred             eeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHH------HHHHhccCCccc-cCc
Confidence                2346899999999987   4667889999999999999999 899985432111      111111111110 111


Q ss_pred             cccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 002105          907 FIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVT  944 (966)
Q Consensus       907 ~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~  944 (966)
                            .  ...-..+.+++.+|++.||++|||++||+
T Consensus       253 ------~--~~~~~~~~~li~~~L~~dP~~Rps~~evl  282 (432)
T 3p23_A          253 ------E--KHEDVIARELIEKMIAMDPQKRPSAKHVL  282 (432)
T ss_dssp             ------T--CHHHHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred             ------c--ccccHHHHHHHHHHHhCCHhhCCCHHHHH
Confidence                  0  12223466788999999999999999998

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=4.1e-33  Score=311.24  Aligned_cols=251  Identities=19%  Similarity=0.277  Sum_probs=185.8

Q ss_pred             cccccCCCCCccEEEEEEE-ecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCC------ceeEEeeEEecCCeeEE
Q 002105          686 ENLTSRGKKGVSSSYKVRS-LANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHP------NIVRLHGVCRSEKAAYL  758 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~-~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~------niv~l~g~~~~~~~~~l  758 (966)
                      .....+|+|++|.||+|.. ..++..||||++.... ...+.+.+|+..+.+ ++|+      +|+++++++..++..++
T Consensus        17 ~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~-l~~~~~~~~~~i~~~~~~~~~~~~~~l   94 (339)
T 1z57_A           17 EIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVLEH-LNTTDPNSTFRCVQMLEWFEHHGHICI   94 (339)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHHHH-HHHHCTTCTTCBCCEEEEEEETTEEEE
T ss_pred             EEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHHHH-hhhcCCCCceeeEeeecccccCCcEEE
Confidence            4455678999999999987 4578889999875432 223456777776666 4554      59999999999999999


Q ss_pred             EEEccCCCCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC---------------
Q 002105          759 VYEYIEGKELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD---------------  818 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~---------------  818 (966)
                      ||||+ +|+|.+++.     .+++..+..++.|+++||+|||   +.+|+||||||+||+++...               
T Consensus        95 v~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~  170 (339)
T 1z57_A           95 VFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERT  170 (339)
T ss_dssp             EEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCCCEEEEEC----CEEEE
T ss_pred             EEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeccccccccCCcccccccc
Confidence            99999 899999986     3789999999999999999999   45899999999999998644               


Q ss_pred             --CceEEEeccccceecC---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHH
Q 002105          819 --EPHLRLSVPGLAYCTD---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARY  893 (966)
Q Consensus       819 --~~~~~~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~  893 (966)
                        ...++++|||.+....   ....||+.|+|||++.+..++.++|||||||++|||+||+.||..... .+.. .....
T Consensus       171 ~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~-~~~~-~~~~~  248 (339)
T 1z57_A          171 LINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDS-KEHL-AMMER  248 (339)
T ss_dssp             ESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCH-HHHH-HHHHH
T ss_pred             ccCCCceEeeCcccccCccccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCh-HHHH-HHHHH
Confidence              4568999999986533   335789999999999999999999999999999999999999975421 1111 11111


Q ss_pred             hhccC--------cccc--------cc-------------cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 002105          894 CYSDC--------HLDT--------WV-------------DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVT  944 (966)
Q Consensus       894 ~~~~~--------~~~~--------~~-------------d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~  944 (966)
                      .....        ....        |.             .+.. ...........++.+++.+|++.||++|||++||+
T Consensus       249 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell  327 (339)
T 1z57_A          249 ILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLK-EFMLSQDVEHERLFDLIQKMLEYDPAKRITLREAL  327 (339)
T ss_dssp             HHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGG-GGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHT
T ss_pred             HhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchh-hhcccchhhHHHHHHHHHHHhCcCcccccCHHHHh
Confidence            10000        0000        00             0000 00000123345678899999999999999999987


Q ss_pred             H
Q 002105          945 K  945 (966)
Q Consensus       945 ~  945 (966)
                      +
T Consensus       328 ~  328 (339)
T 1z57_A          328 K  328 (339)
T ss_dssp             T
T ss_pred             c
Confidence            5

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=1.4e-32  Score=305.44  Aligned_cols=250  Identities=22%  Similarity=0.306  Sum_probs=184.6

Q ss_pred             ccccccCCCCCccEEEEEEEe-cCCcEEEEEEEeccC--cccccchHHHHHHHHhh--cCCCceeEEeeEEe-----cCC
Q 002105          685 EENLTSRGKKGVSSSYKVRSL-ANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKL--IMHPNIVRLHGVCR-----SEK  754 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~-~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~--~~H~niv~l~g~~~-----~~~  754 (966)
                      +.....+|+|++|.||+|+.. .+|..||+|++....  ......+.+|+..+.++  ++|||||+++++|.     .+.
T Consensus        13 y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~   92 (326)
T 1blx_A           13 YECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRET   92 (326)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEE
T ss_pred             eeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCCc
Confidence            344556789999999999984 578889999886432  22334567777666552  38999999999997     556


Q ss_pred             eeEEEEEccCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccc
Q 002105          755 AAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL  829 (966)
Q Consensus       755 ~~~lv~Ey~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~  829 (966)
                      ..++||||++ |+|.++++.     +++..+..++.|++.||+|||.   .+|+||||||+||+++.+.  .++++|||.
T Consensus        93 ~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~gi~H~dlkp~Nili~~~~--~~kl~Dfg~  166 (326)
T 1blx_A           93 KLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSG--QIKLADFGL  166 (326)
T ss_dssp             EEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTC--CEEECSCCS
T ss_pred             eEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCCHHHeEEcCCC--CEEEecCcc
Confidence            7899999999 699999863     8899999999999999999994   5899999999999998654  578999998


Q ss_pred             ceecC-----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccc
Q 002105          830 AYCTD-----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWV  904 (966)
Q Consensus       830 ~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  904 (966)
                      +....     ....+|+.|+|||++.+..++.++|||||||++|||+||+.||..... .+.+..... .........|.
T Consensus       167 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-~~~~~~i~~-~~~~~~~~~~~  244 (326)
T 1blx_A          167 ARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSD-VDQLGKILD-VIGLPGEEDWP  244 (326)
T ss_dssp             CCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHH-HHCCCCGGGSC
T ss_pred             cccccCCCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCH-HHHHHHHHH-HcCCCCcccCc
Confidence            75422     345689999999999999999999999999999999999999975422 111111111 11100000000


Q ss_pred             c--------------ccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          905 D--------------PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       905 d--------------~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .              +.+.......   ..++.+++.+|++.||++|||+.|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~L~~dP~~Rpt~~e~l~  296 (326)
T 1blx_A          245 RDVALPRQAFHSKSAQPIEKFVTDI---DELGKDLLLKCLTFNPAKRISAYSALS  296 (326)
T ss_dssp             TTCSSCGGGSCCCCCCCGGGTCCSC---CHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             cccccchhhhcccCcchhhhccccC---CHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            0              0000000111   124567888999999999999999984

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=3.1e-33  Score=309.63  Aligned_cols=252  Identities=20%  Similarity=0.295  Sum_probs=180.3

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEe--------------
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR--------------  751 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~--------------  751 (966)
                      .....+|+|++|.||+|+...+++.||+|++........+.+.+|+..+.+ ++|||||++++++.              
T Consensus        14 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~~~~~~~~~   92 (320)
T 2i6l_A           14 MDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRR-LDHDNIVKVFEILGPSGSQLTDDVGSLT   92 (320)
T ss_dssp             EEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHT-CCCTTBCCEEEEECTTSCBCCC----CC
T ss_pred             eEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHh-cCCCCeeEEEEecccccccccccccccc
Confidence            445567999999999999988899999999876554445668888888887 69999999999884              


Q ss_pred             cCCeeEEEEEccCCCCHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccc
Q 002105          752 SEKAAYLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL  829 (966)
Q Consensus       752 ~~~~~~lv~Ey~~~g~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~  829 (966)
                      +.+..++||||++ |+|.++++.  +++.....++.|+++||+|||   +.+|+||||||+||+++.+ ...++++|||.
T Consensus        93 ~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~-~~~~kl~Dfg~  167 (320)
T 2i6l_A           93 ELNSVYIVQEYME-TDLANVLEQGPLLEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANLFINTE-DLVLKIGDFGL  167 (320)
T ss_dssp             SCSEEEEEEECCS-EEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETT-TTEEEECCCTT
T ss_pred             ccCceeEEeeccC-CCHHHHhhcCCccHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCC-CCeEEEccCcc
Confidence            3467899999998 699999974  889999999999999999999   4589999999999999743 24689999998


Q ss_pred             ceecC---------CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccC-
Q 002105          830 AYCTD---------SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDC-  898 (966)
Q Consensus       830 ~~~~~---------~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~-  898 (966)
                      +....         ....+|+.|+|||.+.+ ..++.++|||||||++|||+||+.||..... .+........ .... 
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~-~~~~~~~~~~-~~~~~  245 (320)
T 2i6l_A          168 ARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHE-LEQMQLILES-IPVVH  245 (320)
T ss_dssp             CBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHH-SCCCC
T ss_pred             ccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHh-cCCCc
Confidence            76422         12346888999998755 6789999999999999999999999975421 1111111110 0000 


Q ss_pred             ---------cccccccccccCCCcchH----HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          899 ---------HLDTWVDPFIRGHVSSIQ----NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       899 ---------~~~~~~d~~~~~~~~~~~----~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                               .....+............    ....++.+++.+|++.||++|||++|+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (320)
T 2i6l_A          246 EEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS  305 (320)
T ss_dssp             HHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             hhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence                     000000000000000000    01235677888999999999999999975

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=1.9e-33  Score=312.03  Aligned_cols=276  Identities=21%  Similarity=0.322  Sum_probs=148.0

Q ss_pred             CCcHHHHHHHHHHhhcC-CCCCCCCCCC----CCCCCCCcccceeeCC---------CCCEEEEEcCCCCcccccccccc
Q 002105           17 TCHGAELELLLSFKSTV-NDPYNFLSNW----DSSVTFCKWNGISCQN---------STHVNAIELSAKNISGKISSSIF   82 (966)
Q Consensus        17 ~~~~~~~~~Ll~~k~~~-~~~~~~l~~w----~~~~~~c~w~gv~c~~---------~~~v~~L~L~~~~l~~~~~~~~~   82 (966)
                      .+..+|++||++||+++ .|+.+.+++|    ....++|.|.|++|+.         .++|+.|+|++|+++ .+|+.++
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~  101 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF  101 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred             ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence            35568999999999988 4777778889    3446899999999953         134555555555554 4444454


Q ss_pred             CCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEE
Q 002105           83 HLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLD  162 (966)
Q Consensus        83 ~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  162 (966)
                      ++++|++|+|++|.++ .+|..+                       +.+++|++|+|++|.++ .+|..++.+++|++|+
T Consensus       102 ~l~~L~~L~L~~n~l~-~lp~~~-----------------------~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLM-ELPDTM-----------------------QQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             GGTTCSEEEEESSCCC-CCCSCG-----------------------GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             hCCCCCEEECCCCCcc-chhHHH-----------------------hccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            5555555555555554 444332                       34455555555555555 4566666666666666


Q ss_pred             ccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccc
Q 002105          163 LGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG  242 (966)
Q Consensus       163 L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  242 (966)
                      |++|++.+.+|..+...               ..+..+..+++|++|+|++|.++ .+|..++++++|++|++++|++++
T Consensus       157 L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~  220 (328)
T 4fcg_A          157 IRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA  220 (328)
T ss_dssp             EEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred             CCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence            66666666666554430               01111223444444444444444 344444444444444444444442


Q ss_pred             cCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCC
Q 002105          243 QIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLAS  322 (966)
Q Consensus       243 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  322 (966)
                       +|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|.++++
T Consensus       221 -l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~  299 (328)
T 4fcg_A          221 -LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ  299 (328)
T ss_dssp             -CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred             -CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence             3334444444444444444444444444444444444444444444444444444444444444444444444444555


Q ss_pred             CCCccEEEccCCc
Q 002105          323 MPKLQVLQLWSNQ  335 (966)
Q Consensus       323 l~~L~~L~L~~N~  335 (966)
                      +++|+.+++..+.
T Consensus       300 L~~L~~l~l~~~~  312 (328)
T 4fcg_A          300 LPANCIILVPPHL  312 (328)
T ss_dssp             SCTTCEEECCGGG
T ss_pred             ccCceEEeCCHHH
Confidence            5555555444433

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=5.6e-33  Score=313.18  Aligned_cols=254  Identities=19%  Similarity=0.179  Sum_probs=173.5

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCe-------eE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKA-------AY  757 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~-------~~  757 (966)
                      +.....+|+|++|.||+|+...+|..||||++.... .....+..++..+.+ ++|||||+++++|...+.       .+
T Consensus        25 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~-l~h~niv~~~~~~~~~~~~~~~~~~~~  102 (360)
T 3e3p_A           25 FQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAV-LHHPNIVQLQSYFYTLGERDRRDIYLN  102 (360)
T ss_dssp             EEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHH-HCCTTBCCEEEEEEEECSSCTTCEEEE
T ss_pred             eEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHh-cCCCCcccHHHhhhccccccccceeEE
Confidence            344556799999999999998899999999986532 233456667767776 699999999999975433       78


Q ss_pred             EEEEccCCCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccc
Q 002105          758 LVYEYIEGKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA  830 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~  830 (966)
                      +||||+++ +|.+.+.       .+++.....++.|++.||+|||.+ ..+|+||||||+||+++.. ...++++|||.+
T Consensus       103 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~~~ivH~Dlkp~NIll~~~-~~~~kl~Dfg~a  179 (360)
T 3e3p_A          103 VVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLP-SVNVCHRDIKPHNVLVNEA-DGTLKLCDFGSA  179 (360)
T ss_dssp             EEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTST-TTCCBCSCCCGGGEEEETT-TTEEEECCCTTC
T ss_pred             EEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCC-CCCeecCcCCHHHEEEeCC-CCcEEEeeCCCc
Confidence            99999996 4544432       378899999999999999999954 6699999999999999852 346899999998


Q ss_pred             eecC-----CCCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhcc-------
Q 002105          831 YCTD-----SKSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD-------  897 (966)
Q Consensus       831 ~~~~-----~~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-------  897 (966)
                      ....     ....||+.|+|||++.+. .++.++|||||||++|||+||+.||..... ...+....+.....       
T Consensus       180 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~  258 (360)
T 3e3p_A          180 KKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNS-AGQLHEIVRVLGCPSREVLRK  258 (360)
T ss_dssp             BCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHH
T ss_pred             eecCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCCh-HHHHHHHHHHcCCCCHHHHHh
Confidence            6432     234689999999998655 489999999999999999999999976422 22221222110000       


Q ss_pred             --CcccccccccccCCCc-------chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          898 --CHLDTWVDPFIRGHVS-------SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       898 --~~~~~~~d~~~~~~~~-------~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                        ..... .+.......+       .......++.+++.+|++.||++|||+.||++
T Consensus       259 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  314 (360)
T 3e3p_A          259 LNPSHTD-VDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC  314 (360)
T ss_dssp             HCTTCCC-GGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             cccchhh-ccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence              00000 0000000000       00012346778889999999999999999985

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=8.4e-33  Score=304.11  Aligned_cols=236  Identities=19%  Similarity=0.252  Sum_probs=179.4

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC----cccccchHHHHHHHHhhcCCCceeEEeeEEe--cCCeeEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN----TITTSSFWPDVSQFGKLIMHPNIVRLHGVCR--SEKAAYLV  759 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~----~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~--~~~~~~lv  759 (966)
                      .....+|+|++|.||++....++..||+|.+....    ....+.+.+|+..+.+ ++|||||++++++.  +.+..++|
T Consensus         8 ~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~~~lv   86 (305)
T 2wtk_C            8 LMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRR-LRHKNVIQLVDVLYNEEKQKMYMV   86 (305)
T ss_dssp             CCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTT-CCCTTBCCEEEEEECC---CEEEE
T ss_pred             eEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHh-cCCCCeeEEEEEEEcCCCCeEEEE
Confidence            33455788999999999998899999999986432    2233557788888777 69999999999984  45678999


Q ss_pred             EEccCCCCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          760 YEYIEGKELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      |||+++| |.+++.     .+++..+..++.|+++||+|||.   .+|+||||||+||+++.+.  .++++|||.+....
T Consensus        87 ~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~---~~i~H~dlkp~NIl~~~~~--~~kl~dfg~~~~~~  160 (305)
T 2wtk_C           87 MEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHS---QGIVHKDIKPGNLLLTTGG--TLKISALGVAEALH  160 (305)
T ss_dssp             EECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTC--CEEECCCTTCEECC
T ss_pred             ehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCcccEEEcCCC--cEEeeccccccccC
Confidence            9999977 777765     38899999999999999999994   5899999999999998654  57899999876432


Q ss_pred             --------CCCcCCcccccccccCCCC--CCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccc
Q 002105          835 --------SKSINSSAYVAPETKESKD--ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWV  904 (966)
Q Consensus       835 --------~~~~~~~~y~aPE~~~~~~--~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  904 (966)
                              ....||+.|+|||+..+..  ++.++|||||||++|||+||+.||....  .....+...   .. ..    
T Consensus       161 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~~i~---~~-~~----  230 (305)
T 2wtk_C          161 PFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDN--IYKLFENIG---KG-SY----  230 (305)
T ss_dssp             TTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHH---HC-CC----
T ss_pred             ccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCch--HHHHHHHHh---cC-CC----
Confidence                    2345899999999987644  3779999999999999999999997532  111111111   11 10    


Q ss_pred             cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          905 DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       905 d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                        .+....+      .++.+++.+|++.||++|||++|+++.
T Consensus       231 --~~~~~~~------~~l~~li~~~l~~dp~~Rps~~~ll~~  264 (305)
T 2wtk_C          231 --AIPGDCG------PPLSDLLKGMLEYEPAKRFSIRQIRQH  264 (305)
T ss_dssp             --CCCSSSC------HHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             --CCCCccC------HHHHHHHHHHccCChhhCCCHHHHhcC
Confidence              1111222      245677889999999999999999864

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=4.2e-33  Score=308.41  Aligned_cols=241  Identities=21%  Similarity=0.345  Sum_probs=169.6

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .....+|+|++|.||+|+...+|..||||++..... ....++..|+..+.+.++|||||++++++..++..++||||+ 
T Consensus        28 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-  106 (318)
T 2dyl_A           28 ENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELM-  106 (318)
T ss_dssp             EEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC-
T ss_pred             cccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEEecc-
Confidence            445567999999999999988999999999865432 222345556665556579999999999999999999999999 


Q ss_pred             CCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-----CC
Q 002105          765 GKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-----DS  835 (966)
Q Consensus       765 ~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-----~~  835 (966)
                      ++.+..+..    .+++..+..++.|+++||+|||..  .+|+||||||+||+++.+.  .++++|||.+...     ..
T Consensus       107 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~--~~kl~dfg~~~~~~~~~~~~  182 (318)
T 2dyl_A          107 GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERG--QIKLCDFGISGRLVDDKAKD  182 (318)
T ss_dssp             SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCGGGEEECTTS--CEEECCCTTC----------
T ss_pred             CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhh--CCEEeCCCCHHHEEECCCC--CEEEEECCCchhccCCcccc
Confidence            456665553    489999999999999999999952  2899999999999998654  5789999987542     12


Q ss_pred             CCcCCcccccccccC-----CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          836 KSINSSAYVAPETKE-----SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~-----~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                      ...+|+.|+|||++.     ...++.++|||||||++|||+||+.||.......+....    .....      .+....
T Consensus       183 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~----~~~~~------~~~~~~  252 (318)
T 2dyl_A          183 RSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTK----VLQEE------PPLLPG  252 (318)
T ss_dssp             ----CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHH----HHHSC------CCCCCS
T ss_pred             ccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHH----HhccC------CCCCCc
Confidence            346899999999984     567899999999999999999999999753222222211    11111      011110


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      . ....   .++.+++.+||+.||.+||+++|+++
T Consensus       253 ~-~~~~---~~l~~li~~~l~~dp~~Rps~~~ll~  283 (318)
T 2dyl_A          253 H-MGFS---GDFQSFVKDCLTKDHRKRPKYNKLLE  283 (318)
T ss_dssp             S-SCCC---HHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             c-CCCC---HHHHHHHHHHccCChhHCcCHHHHhh
Confidence            0 0011   24667788999999999999999874

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=1.5e-33  Score=309.43  Aligned_cols=237  Identities=20%  Similarity=0.344  Sum_probs=175.5

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEec-------------
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS-------------  752 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~-------------  752 (966)
                      .....+|+|++|.||+|+...++..||||++... ....+.+.+|+..+.+ ++||||+++++++.+             
T Consensus         9 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~~~~~~~~~   86 (303)
T 1zy4_A            9 EEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLAS-LNHQYVVRYYAAWLERRNFVKPMTAVKK   86 (303)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTT-CCCTTBCCEEEEEEECCCCCC------C
T ss_pred             hhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHh-cCchHHHHHHHHHHhhcchhhhhccccc
Confidence            3445678899999999999889999999998542 2233457788887777 699999999999865             


Q ss_pred             CCeeEEEEEccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccc
Q 002105          753 EKAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPG  828 (966)
Q Consensus       753 ~~~~~lv~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~  828 (966)
                      .+..|+||||+++|+|.++++    .+++.....++.|+++||+|||.   .+|+||||||+||+++.+.  .++++|||
T Consensus        87 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dlkp~Nil~~~~~--~~kl~dfg  161 (303)
T 1zy4_A           87 KSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHS---QGIIHRDLKPMNIFIDESR--NVKIGDFG  161 (303)
T ss_dssp             EEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTS--CEEECCCC
T ss_pred             CCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHh---CCeecccCCHHhEEEcCCC--CEEEeeCc
Confidence            356899999999999999996    36788999999999999999994   4899999999999998654  57899999


Q ss_pred             cceecC--------------------CCCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhH
Q 002105          829 LAYCTD--------------------SKSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESI  887 (966)
Q Consensus       829 ~~~~~~--------------------~~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~  887 (966)
                      .+....                    ....||+.|+|||.+.+. .++.++|||||||++|||++   |+...   .+. 
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~---~~~-  234 (303)
T 1zy4_A          162 LAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTG---MER-  234 (303)
T ss_dssp             CCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSH---HHH-
T ss_pred             chhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCc---hhH-
Confidence            875421                    123578899999998764 68999999999999999999   44321   111 


Q ss_pred             HHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          888 VEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       888 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .+....... ... . ..+.....      ...++.+++.+|++.||++|||++|+++
T Consensus       235 ~~~~~~~~~-~~~-~-~~~~~~~~------~~~~~~~li~~~l~~dp~~Rps~~~ll~  283 (303)
T 1zy4_A          235 VNILKKLRS-VSI-E-FPPDFDDN------KMKVEKKIIRLLIDHDPNKRPGARTLLN  283 (303)
T ss_dssp             HHHHHHHHS-TTC-C-CCTTCCTT------TSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHhccc-ccc-c-cCcccccc------chHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence            111111111 000 0 11111111      1234567888999999999999999985

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=6.5e-33  Score=316.09  Aligned_cols=248  Identities=19%  Similarity=0.242  Sum_probs=176.6

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCC------eeEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK------AAYL  758 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~------~~~l  758 (966)
                      +.....+|+|+||.||+|+.. .+..||+|++.....    ...+|+..+.+ ++|||||+++++|...+      ..++
T Consensus        42 Y~~~~~lG~G~~g~V~~a~~~-~~~~~aikk~~~~~~----~~~~E~~il~~-l~h~niv~l~~~~~~~~~~~~~~~~~l  115 (394)
T 4e7w_A           42 YTNCKVIGNGSFGVVFQAKLV-ESDEVAIKKVLQDKR----FKNRELQIMRI-VKHPNVVDLKAFFYSNGDKKDEVFLNL  115 (394)
T ss_dssp             EEEEEEEEEETTEEEEEEEET-TTEEEEEEEEECCTT----SCCHHHHHHHT-CCCTTBCCEEEEEEEESSSSSCEEEEE
T ss_pred             EEEeEEEeeCCCeEEEEEEEC-CCCeEEEEEEecCcc----hHHHHHHHHHh-CCCCCcceEEEEEEecCCCCCceEEEE
Confidence            445566799999999999984 455699999865332    23357766666 79999999999996533      3789


Q ss_pred             EEEccCCCCHHHHHH------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee
Q 002105          759 VYEYIEGKELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC  832 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~  832 (966)
                      ||||++++.+....+      .+++.....++.||++||+|||   +.+|+||||||+|||++.. ...++++|||.+..
T Consensus       116 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~-~~~~kL~DFG~a~~  191 (394)
T 4e7w_A          116 VLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH---SIGICHRDIKPQNLLLDPP-SGVLKLIDFGSAKI  191 (394)
T ss_dssp             EEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETT-TTEEEECCCTTCEE
T ss_pred             EeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEcCC-CCcEEEeeCCCccc
Confidence            999999765443331      4889999999999999999999   4589999999999999832 34689999999864


Q ss_pred             c-----CCCCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhc---------c
Q 002105          833 T-----DSKSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYS---------D  897 (966)
Q Consensus       833 ~-----~~~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~---------~  897 (966)
                      .     .....+|+.|+|||++.+. .++.++|||||||++|||++|+.||.+... .+.+.+.....-.         .
T Consensus       192 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~-~~~l~~i~~~~g~p~~~~~~~~~  270 (394)
T 4e7w_A          192 LIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESG-IDQLVEIIKVLGTPSREQIKTMN  270 (394)
T ss_dssp             CCTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHHHC
T ss_pred             ccCCCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHHHHhhC
Confidence            2     2234689999999998664 589999999999999999999999976532 2222122211000         0


Q ss_pred             CcccccccccccCCCcchHH-----HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          898 CHLDTWVDPFIRGHVSSIQN-----EIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       898 ~~~~~~~d~~~~~~~~~~~~-----~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .......-|.+...  ....     ...++.+++.+|++.||++|||+.|+++
T Consensus       271 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  321 (394)
T 4e7w_A          271 PNYMEHKFPQIRPH--PFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC  321 (394)
T ss_dssp             GGGSSSCCCCCCCC--CHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             hhhhhhccccccCC--cHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence            00000000000000  0000     1135778889999999999999999875

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=2.1e-33  Score=318.22  Aligned_cols=257  Identities=16%  Similarity=0.237  Sum_probs=185.4

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhc----------CCCceeEEeeEEecCC
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLI----------MHPNIVRLHGVCRSEK  754 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~----------~H~niv~l~g~~~~~~  754 (966)
                      +.....+|+|++|.||+|+...++..||||++... ....+.+.+|+..+.++-          .||||+++++++...+
T Consensus        21 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~   99 (373)
T 1q8y_A           21 YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKG   99 (373)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEE
T ss_pred             EEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccC
Confidence            44455679999999999999889999999988532 223345677777766631          2899999999998654


Q ss_pred             ----eeEEEEEccCCCCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC----CCce
Q 002105          755 ----AAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK----DEPH  821 (966)
Q Consensus       755 ----~~~lv~Ey~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~----~~~~  821 (966)
                          ..++||||+ +|+|.+++..     +++..+..++.||+.||+|||..  .+|+||||||+||+++.+    ....
T Consensus       100 ~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~--~~ivH~Dikp~NIll~~~~~~~~~~~  176 (373)
T 1q8y_A          100 PNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRR--CGIIHTDIKPENVLMEIVDSPENLIQ  176 (373)
T ss_dssp             TTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHT--TCEECSCCSGGGEEEEEEETTTTEEE
T ss_pred             CCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhc--CCEEecCCChHHeEEeccCCCcCcce
Confidence                789999999 8999999863     89999999999999999999942  289999999999999642    3346


Q ss_pred             EEEeccccceecC---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc-----hhhHHHHHHH
Q 002105          822 LRLSVPGLAYCTD---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV-----HESIVEWARY  893 (966)
Q Consensus       822 ~~~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~-----~~~~~~~~~~  893 (966)
                      ++++|||.+....   ....||+.|+|||++.+..++.++|||||||++|||+||+.||......     .+.+.+....
T Consensus       177 ~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~  256 (373)
T 1q8y_A          177 IKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIEL  256 (373)
T ss_dssp             EEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHH
T ss_pred             EEEcccccccccCCCCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHh
Confidence            8999999986532   3457899999999999999999999999999999999999999754321     1111111110


Q ss_pred             h-----------------hcc-Cccccccc-------ccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          894 C-----------------YSD-CHLDTWVD-------PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       894 ~-----------------~~~-~~~~~~~d-------~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .                 +.. ........       ...............++.+++.+|++.||++|||++||++
T Consensus       257 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  333 (373)
T 1q8y_A          257 LGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN  333 (373)
T ss_dssp             HCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred             cCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhh
Confidence            0                 000 00000000       0000001111344567788999999999999999999976

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=2.7e-33  Score=310.27  Aligned_cols=232  Identities=21%  Similarity=0.295  Sum_probs=184.4

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc------cccchHHHHHHHHhhc-CCCceeEEeeEEecCCeeEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI------TTSSFWPDVSQFGKLI-MHPNIVRLHGVCRSEKAAYL  758 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~------~~~~~~~e~~~~~~~~-~H~niv~l~g~~~~~~~~~l  758 (966)
                      .....+|+|++|.||+|+...++..||||++......      ..+.+..|+..+.++- .||||+++++++..++..++
T Consensus        46 ~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~~~~l  125 (320)
T 3a99_A           46 QVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVL  125 (320)
T ss_dssp             EEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEE
T ss_pred             EEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCCcEEE
Confidence            3445679999999999999889999999998654322      2356778888887742 36999999999999999999


Q ss_pred             EEEccCC-CCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          759 VYEYIEG-KELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       759 v~Ey~~~-g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      ||||+.+ ++|.+++.   .+++..+..++.|+++||+|||   +.+|+||||||+||+++.+ ...++++|||.+....
T Consensus       126 v~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~-~~~~kL~Dfg~~~~~~  201 (320)
T 3a99_A          126 ILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLN-RGELKLIDFGSGALLK  201 (320)
T ss_dssp             EEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETT-TTEEEECCCTTCEECC
T ss_pred             EEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCCHHHEEEeCC-CCCEEEeeCccccccc
Confidence            9999986 89999986   3899999999999999999999   4589999999999999832 3468999999876532


Q ss_pred             ----CCCcCCcccccccccCCCCC-CCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccccc
Q 002105          835 ----SKSINSSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~~~-~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                          ....||+.|+|||++.+..+ +.++|||||||++|||+||+.||...    .   +...    . .  .    ...
T Consensus       202 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~----~---~~~~----~-~--~----~~~  263 (320)
T 3a99_A          202 DTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD----E---EIIR----G-Q--V----FFR  263 (320)
T ss_dssp             SSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH----H---HHHH----C-C--C----CCS
T ss_pred             cccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCCh----h---hhhc----c-c--c----ccc
Confidence                23468999999999877665 67899999999999999999998642    1   1111    0 0  0    011


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ...+      .++.+++.+||+.||++|||++||++
T Consensus       264 ~~~~------~~~~~li~~~l~~dp~~Rps~~~ll~  293 (320)
T 3a99_A          264 QRVS------SECQHLIRWCLALRPSDRPTFEEIQN  293 (320)
T ss_dssp             SCCC------HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ccCC------HHHHHHHHHHccCChhhCcCHHHHhc
Confidence            1122      24667888999999999999999976

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=2.1e-33  Score=316.56  Aligned_cols=252  Identities=19%  Similarity=0.267  Sum_probs=171.5

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecC------Cee
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE------KAA  756 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~------~~~  756 (966)
                      +.....+|+|++|.||+|+...+|..||||++....  ....+.+.+|+..+.+ ++|||||++++++...      ...
T Consensus        31 y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~-l~hpnIv~~~~~~~~~~~~~~~~~~  109 (367)
T 2fst_X           31 YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKH-MKHENVIGLLDVFTPARSLEEFNDV  109 (367)
T ss_dssp             EEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHH-CCCTTBCCCSEEECSCSSGGGCCCC
T ss_pred             eEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHh-CCCCCCCcEEEEEecCCccccCCeE
Confidence            345567899999999999998999999999985432  1233457788888777 6999999999999754      568


Q ss_pred             EEEEEccCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          757 YLVYEYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       757 ~lv~Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      |+||||+ +++|.++++  .+++..+..++.||++||+|||   +.+|+||||||+||+++.+.  .++++|||++....
T Consensus       110 ~lv~e~~-~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~--~~kL~DFG~a~~~~  183 (367)
T 2fst_X          110 YLVTHLM-GADLNNIVKCQKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDC--ELKILDFGLARHTA  183 (367)
T ss_dssp             EEEEECC-CEECC-----CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTC--CEEECC--------
T ss_pred             EEEeccc-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHhhEEECCCC--CEEEeecccccccc
Confidence            9999999 689999886  4899999999999999999999   45899999999999999654  57899999886532


Q ss_pred             ---CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcc---c------
Q 002105          835 ---SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHL---D------  901 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~---~------  901 (966)
                         ....||+.|+|||++.+ ..++.++||||+||++|||+||+.||.+... .+.+..... .......   .      
T Consensus       184 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~l~~i~~-~~g~p~~~~~~~~~~~~  261 (367)
T 2fst_X          184 DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH-IDQLKLILR-LVGTPGAELLKKISSES  261 (367)
T ss_dssp             -------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHH-HHCSCCHHHHTTCCCHH
T ss_pred             ccCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHH-HhCCCCHHHHHHhhhHH
Confidence               33478999999999876 6789999999999999999999999976421 111111111 1100000   0      


Q ss_pred             --ccccccccCCCcchH----HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          902 --TWVDPFIRGHVSSIQ----NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       902 --~~~d~~~~~~~~~~~----~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                        .++............    ....++.+++.+|++.||++|||+.|+++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~  311 (367)
T 2fst_X          262 ARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  311 (367)
T ss_dssp             HHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence              000000000000000    00134677888999999999999999875

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=2.8e-33  Score=316.74  Aligned_cols=252  Identities=19%  Similarity=0.260  Sum_probs=183.2

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCee------E
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAA------Y  757 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~------~  757 (966)
                      .....+|+|++|.||+|+...+|..||||++.....  ...+.+.+|+..+.+ ++|||||++++++...+..      +
T Consensus        45 ~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~~~~~~~  123 (371)
T 4exu_A           45 VSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKH-MQHENVIGLLDVFTPASSLRNFYDFY  123 (371)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHH-CCCTTBCCCSEEECSCSSSTTCCCCE
T ss_pred             EEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHh-cCCCCchhhhhheeccCCcccceeEE
Confidence            344557899999999999988999999999865322  223456778877777 6999999999999877654      9


Q ss_pred             EEEEccCCCCHHHHHH-cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          758 LVYEYIEGKELSEVLR-NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~-~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      +||||++ |+|.+++. .+++..+..++.|++.||+|||.   .+|+||||||+||+++.+.  .++++|||.+....  
T Consensus       124 lv~e~~~-~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~--~~kL~Dfg~a~~~~~~  197 (371)
T 4exu_A          124 LVMPFMQ-TDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDC--ELKILDFGLARHADAE  197 (371)
T ss_dssp             EEEECCC-EEHHHHTTSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTC--CEEECSTTCC------
T ss_pred             EEEcccc-ccHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCcCHHHeEECCCC--CEEEEecCcccccccC
Confidence            9999998 68988886 48999999999999999999994   5899999999999999664  47899999886432  


Q ss_pred             -CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccC--cccc--------
Q 002105          835 -SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDC--HLDT--------  902 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~--------  902 (966)
                       ....+|+.|+|||++.+ ..++.++|||||||++|||+||+.||.+... .+.+.......-...  ....        
T Consensus       198 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  276 (371)
T 4exu_A          198 MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDY-LDQLTQILKVTGVPGTEFVQKLNDKAAKS  276 (371)
T ss_dssp             --CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHHHCCCCHHHHTTCSCHHHHH
T ss_pred             cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCh-HHHHHHHHHHhCCCcHHHHHHhhhhhhhh
Confidence             34568999999999877 7789999999999999999999999976421 111111111000000  0000        


Q ss_pred             cccccccCCCcchH----HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          903 WVDPFIRGHVSSIQ----NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       903 ~~d~~~~~~~~~~~----~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +.............    ....++.+++.+|++.||++|||++|+++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  323 (371)
T 4exu_A          277 YIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT  323 (371)
T ss_dssp             HHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             hhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence            00000000000000    01235677889999999999999999875

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=4.8e-33  Score=336.20  Aligned_cols=242  Identities=20%  Similarity=0.305  Sum_probs=186.0

Q ss_pred             ccccCCCCCccEEEEEEEecC---CcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          687 NLTSRGKKGVSSSYKVRSLAN---DMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~---~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      ....+|+|+||.||+|+...+   +..||||++..... ...+.|.+|+..+.+ ++|||||+++|++. ++..|+||||
T Consensus       394 i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~HpnIv~l~~~~~-~~~~~lv~E~  471 (656)
T 2j0j_A          394 LGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQ-FDHPHIVKLIGVIT-ENPVWIIMEL  471 (656)
T ss_dssp             EEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHH-CCCTTBCCEEEEEC-SSSCEEEEEC
T ss_pred             EeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHh-CCCCCCCeEEEEEe-cCceEEEEEc
Confidence            344579999999999997543   45688888754322 223567788887777 69999999999985 4668999999


Q ss_pred             cCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC---
Q 002105          763 IEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS---  835 (966)
Q Consensus       763 ~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~---  835 (966)
                      +++|+|.++++    .++|..+..++.|+++||+|||.   .+|+||||||+|||++.+  ..++++|||++.....   
T Consensus       472 ~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDikp~NILl~~~--~~vkL~DFG~a~~~~~~~~  546 (656)
T 2j0j_A          472 CTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSN--DCVKLGDFGLSRYMEDSTY  546 (656)
T ss_dssp             CTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEET--TEEEECCCCCCCSCCC---
T ss_pred             CCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccchHhEEEeCC--CCEEEEecCCCeecCCCcc
Confidence            99999999996    38899999999999999999994   589999999999999865  4689999998864321   


Q ss_pred             ----CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          836 ----KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       836 ----~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                          ...+|+.|||||++.+..++.++|||||||++|||++ |+.||.+..  ...+...+..   ....      ....
T Consensus       547 ~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~--~~~~~~~i~~---~~~~------~~~~  615 (656)
T 2j0j_A          547 YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK--NNDVIGRIEN---GERL------PMPP  615 (656)
T ss_dssp             -------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--HHHHHHHHHH---TCCC------CCCT
T ss_pred             eeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCC--HHHHHHHHHc---CCCC------CCCc
Confidence                2345778999999988899999999999999999997 999987532  1112122211   1110      1111


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      .++      .++.+++.+||+.||++|||+.||+++|++++.
T Consensus       616 ~~~------~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~  651 (656)
T 2j0j_A          616 NCP------PTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE  651 (656)
T ss_dssp             TCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ccc------HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence            222      256678889999999999999999999998543

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=5e-33  Score=307.21  Aligned_cols=239  Identities=19%  Similarity=0.281  Sum_probs=180.9

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcC-CCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIM-HPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~-H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      +.....+|+|++|.||+++. .++..||||++....  ....+.+.+|+..+.++-. |||||++++++..++..++|||
T Consensus        30 y~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e  108 (313)
T 3cek_A           30 YSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME  108 (313)
T ss_dssp             EEEEEEEECCSSEEEEEEEC-TTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEEEC
T ss_pred             EEEEEEecCCCCEEEEEEEc-CCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEEEe
Confidence            44556679999999999998 678899999986432  2233567788888877422 6999999999999999999999


Q ss_pred             ccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          762 YIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       762 y~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                       +.+|+|.++++.   +++..+..++.|+++||+|||.   .+|+||||||+||++++   ..++++|||.+....    
T Consensus       109 -~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~---~~~kL~Dfg~~~~~~~~~~  181 (313)
T 3cek_A          109 -CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIVD---GMLKLIDFGIANQMQPDTT  181 (313)
T ss_dssp             -CCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEET---TEEEECCCSSSCC------
T ss_pred             -cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcccEEEEC---CeEEEeeccccccccCccc
Confidence             667899999963   8899999999999999999994   58999999999999974   468999999876421    


Q ss_pred             ----CCCcCCcccccccccCC-----------CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCc
Q 002105          835 ----SKSINSSAYVAPETKES-----------KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCH  899 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~-----------~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  899 (966)
                          ....||+.|+|||.+.+           ..++.++|||||||++|||+||+.||..........    ........
T Consensus       182 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~----~~~~~~~~  257 (313)
T 3cek_A          182 SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKL----HAIIDPNH  257 (313)
T ss_dssp             --------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHH----HHHHCTTS
T ss_pred             cccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHH----HHHHhccc
Confidence                22368999999999865           468889999999999999999999997543221111    11111110


Q ss_pred             ccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          900 LDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       900 ~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      .     .......+      .++.+++.+||+.||++||+++|+++.
T Consensus       258 ~-----~~~~~~~~------~~l~~li~~~l~~dp~~Rps~~ell~h  293 (313)
T 3cek_A          258 E-----IEFPDIPE------KDLQDVLKCCLKRDPKQRISIPELLAH  293 (313)
T ss_dssp             C-----CCCCCCSC------HHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             c-----cCCcccch------HHHHHHHHHHccCCcccCcCHHHHhcC
Confidence            0     00111111      246677889999999999999999863

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=2.4e-33  Score=305.04  Aligned_cols=226  Identities=19%  Similarity=0.170  Sum_probs=171.0

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc---ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      .....+|+|++|.||+|++..+++.||||.+.......   .+.|.+|+..+.+ ++|||||++++++..++..|+||||
T Consensus        34 ~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~-l~hp~iv~~~~~~~~~~~~~lv~e~  112 (286)
T 3uqc_A           34 RLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSR-IDKPGVARVLDVVHTRAGGLVVAEW  112 (286)
T ss_dssp             EEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHT-CCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             EEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhc-CCCCCcceeeEEEEECCcEEEEEEe
Confidence            44456789999999999998889999999886443221   2567888888877 6999999999999999999999999


Q ss_pred             cCCCCHHHHHHc-CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCCCcCCc
Q 002105          763 IEGKELSEVLRN-LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS  841 (966)
Q Consensus       763 ~~~g~L~~~l~~-l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (966)
                      ++||+|.++++. ....+..+++.|++.||+|||   +.+|+||||||+||+++.++..  +++              ++
T Consensus       113 ~~g~~L~~~l~~~~~~~~~~~i~~ql~~aL~~lH---~~givH~Dikp~NIll~~~g~~--kl~--------------~~  173 (286)
T 3uqc_A          113 IRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAH---RAGVALSIDHPSRVRVSIDGDV--VLA--------------YP  173 (286)
T ss_dssp             CCEEEHHHHHTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEETTSCE--EEC--------------SC
T ss_pred             cCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHH---HCCCccCCCCcccEEEcCCCCE--EEE--------------ec
Confidence            999999999964 556678889999999999999   4589999999999999976553  333              34


Q ss_pred             ccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccc-cccCCCcchHHHHH
Q 002105          842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDP-FIRGHVSSIQNEIV  920 (966)
Q Consensus       842 ~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~  920 (966)
                      +|++|       ++.++|||||||++|||+||+.||.+........  .   ... ........+ ......+      .
T Consensus       174 ~~~~~-------~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~--~---~~~-~~~~~~~~~~~~~~~~~------~  234 (286)
T 3uqc_A          174 ATMPD-------ANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLA--P---AER-DTAGQPIEPADIDRDIP------F  234 (286)
T ss_dssp             CCCTT-------CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSE--E---CCB-CTTSCBCCHHHHCTTSC------H
T ss_pred             cccCC-------CCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhH--H---HHH-HhccCCCChhhcccCCC------H
Confidence            56665       6889999999999999999999997642211000  0   000 000000000 0111111      2


Q ss_pred             HHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 002105          921 EIMNLALHCTAGDPTARPCASDVTKTLESCF  951 (966)
Q Consensus       921 ~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~  951 (966)
                      ++.+++.+||+.||++| |+.|+++.|++..
T Consensus       235 ~l~~li~~~l~~dP~~R-s~~el~~~L~~~~  264 (286)
T 3uqc_A          235 QISAVAARSVQGDGGIR-SASTLLNLMQQAT  264 (286)
T ss_dssp             HHHHHHHHHHCTTSSCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccCCccC-CHHHHHHHHHHHh
Confidence            46678889999999999 9999999999843

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=2.2e-31  Score=296.61  Aligned_cols=294  Identities=24%  Similarity=0.294  Sum_probs=197.8

Q ss_pred             CCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCC
Q 002105          111 SLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASN  190 (966)
Q Consensus       111 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n  190 (966)
                      +|+++++++|.++ .+|..-.++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|++++|
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             cCCEEECCCCCcc-ccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            4555555555554 233333356777777777777666667777777777777777777766777777777777777777


Q ss_pred             CCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeeccccc--ccCCcCCCCCCccceEeccccccCCCC
Q 002105          191 QLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLT--GQIPPSFGNLSNLRYLFLYQNKLTGSI  268 (966)
Q Consensus       191 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~  268 (966)
                      +++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.++  +..|..+..+ +|++|++++|++++ +
T Consensus       113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l  187 (332)
T 2ft3_A          113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-I  187 (332)
T ss_dssp             CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-C
T ss_pred             cCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-c
Confidence            776 4555444  67778888888777655566777888888888888775  3566777777 78888888888775 4


Q ss_pred             ChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCC
Q 002105          269 PKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQN  348 (966)
Q Consensus       269 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~  348 (966)
                      |..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..++
T Consensus       188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~  264 (332)
T 2ft3_A          188 PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK  264 (332)
T ss_dssp             CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred             Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc
Confidence            54443  57777777777777666677777777777777777777766667777777777777777776 5666677777


Q ss_pred             CCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccC--CcCChhhcCCCcccEEc
Q 002105          349 NLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLS--GELSSEFTRLPLVYFLD  426 (966)
Q Consensus       349 ~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~Ld  426 (966)
                      +|+.|++++|.+++..+..|+...                +  -....+|+.|++++|.+.  +..|..|..++.|+.++
T Consensus       265 ~L~~L~l~~N~l~~~~~~~~~~~~----------------~--~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~  326 (332)
T 2ft3_A          265 LLQVVYLHTNNITKVGVNDFCPVG----------------F--GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ  326 (332)
T ss_dssp             TCCEEECCSSCCCBCCTTSSSCSS----------------C--CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred             cCCEEECCCCCCCccChhHccccc----------------c--ccccccccceEeecCcccccccCcccccccchhhhhh
Confidence            777777777777765555554321                0  001345666666666665  45556666677777777


Q ss_pred             ccCCC
Q 002105          427 ISGND  431 (966)
Q Consensus       427 Ls~N~  431 (966)
                      +++|+
T Consensus       327 l~~n~  331 (332)
T 2ft3_A          327 FGNYK  331 (332)
T ss_dssp             C----
T ss_pred             ccccc
Confidence            76663

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=9e-33  Score=311.78  Aligned_cols=251  Identities=14%  Similarity=0.199  Sum_probs=177.4

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc-----------ccchHHHHHHHHhhcCCCceeEEeeEEec-
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT-----------TSSFWPDVSQFGKLIMHPNIVRLHGVCRS-  752 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~-----------~~~~~~e~~~~~~~~~H~niv~l~g~~~~-  752 (966)
                      +.....+|+|++|.||+|+. .+|..||||++.......           .+.+.+|+..+.+ ++|||||++++++.. 
T Consensus        24 y~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~  101 (362)
T 3pg1_A           24 YTVQRFISSGSYGAVCAGVD-SEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNH-FHHPNILGLRDIFVHF  101 (362)
T ss_dssp             CEEEEEEEEETTEEEEEEEC-TTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHH-CCCTTBCCCSEEEEEC
T ss_pred             eEEeEEeccCCCEEEEEEEC-CCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHh-CCCcCccceeeeEEec
Confidence            34455678999999999998 669999999986432221           1457788888877 699999999999854 


Q ss_pred             ----CCeeEEEEEccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEE
Q 002105          753 ----EKAAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRL  824 (966)
Q Consensus       753 ----~~~~~lv~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~  824 (966)
                          ....|+||||++ |+|.+++.    .+++..+..++.||+.||+|||.   .+|+||||||+||+++.+.  .+++
T Consensus       102 ~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~~~~--~~kl  175 (362)
T 3pg1_A          102 EEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHE---AGVVHRDLHPGNILLADNN--DITI  175 (362)
T ss_dssp             CTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTC--CEEE
T ss_pred             cCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH---CcCEecCCChHHEEEcCCC--CEEE
Confidence                346899999999 68888885    38999999999999999999994   5899999999999998654  5789


Q ss_pred             eccccceec-----CCCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccC
Q 002105          825 SVPGLAYCT-----DSKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDC  898 (966)
Q Consensus       825 ~~~~~~~~~-----~~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  898 (966)
                      +|||.+...     .....+|+.|+|||++.+ ..++.++|||||||++|||+||+.||.+... .+........ ....
T Consensus       176 ~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~-~~~~~~i~~~-~~~~  253 (362)
T 3pg1_A          176 CDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTF-YNQLNKIVEV-VGTP  253 (362)
T ss_dssp             CCTTC---------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHH-HCCC
T ss_pred             EecCcccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHH-cCCC
Confidence            999988542     223467899999998876 6789999999999999999999999976421 1111111110 0000


Q ss_pred             cc-----------cccccccccCCCc-ch----HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          899 HL-----------DTWVDPFIRGHVS-SI----QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       899 ~~-----------~~~~d~~~~~~~~-~~----~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ..           ..+.......... ..    ......+.+++.+|++.||++|||+.|+++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  316 (362)
T 3pg1_A          254 KIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR  316 (362)
T ss_dssp             CHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence            00           0000000000000 00    001234677889999999999999999985

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.98  E-value=1e-32  Score=304.28  Aligned_cols=250  Identities=29%  Similarity=0.441  Sum_probs=160.2

Q ss_pred             CcEEEccCCcccc--cCCCCccCCCCccEEEccC-CCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEc
Q 002105          350 LTVIDLSTNFLTG--KIPETLCDSGSLFKLILFS-NSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLD  426 (966)
Q Consensus       350 L~~L~Ls~N~l~~--~~p~~~~~~~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~Ld  426 (966)
                      ++.|+|++|.+++  .+|..+..+++|++|++++ |.+.+.+|..|..+++|++|+|++|++++.+|..|..+++|++|+
T Consensus        52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  131 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence            3444444444444  3444444444444444442 444444555555555555555566655555555555666666666


Q ss_pred             ccCCCCCCccCcchhccCCCcEecCCCCcCCccCCC-CcCcc-cccccccccccccccCCCcccCcCCCCEEEccCCccC
Q 002105          427 ISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPD-SFGSD-QLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLF  504 (966)
Q Consensus       427 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  504 (966)
                      +++|++++.+|..+..+++|++|+|++|++++.+|. +..+. .|++|++++|++++.+|..+..++ |+.|++++|+++
T Consensus       132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~  210 (313)
T 1ogq_A          132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE  210 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred             CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence            666666655565566666666666666666655555 33444 666677777777767777777666 777777777777


Q ss_pred             CCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCcccccCCCCCc
Q 002105          505 GDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGA  584 (966)
Q Consensus       505 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~ip~~~~  584 (966)
                      +.+|..+..+++|+.|+|++|++++.+|. +..+++|+.|+|++|++++.+|..+..+++|+.|++++|+++|.+|..+.
T Consensus       211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  289 (313)
T 1ogq_A          211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN  289 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred             CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCcc
Confidence            77777777777777777777777766655 66677777777777777777777777777777777777777777777766


Q ss_pred             cCCCccccccCC-CCCCC
Q 002105          585 FLAINATAVAGN-DLCGG  601 (966)
Q Consensus       585 ~~~~~~~~~~gn-~lcg~  601 (966)
                      +..+....+.+| .+||.
T Consensus       290 l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          290 LQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             GGGSCGGGTCSSSEEEST
T ss_pred             ccccChHHhcCCCCccCC
Confidence            666777777777 57764

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.98  E-value=4.5e-33  Score=307.39  Aligned_cols=232  Identities=20%  Similarity=0.284  Sum_probs=178.0

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc------ccccchHHHHHHHHhhc---CCCceeEEeeEEecCCee
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT------ITTSSFWPDVSQFGKLI---MHPNIVRLHGVCRSEKAA  756 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~------~~~~~~~~e~~~~~~~~---~H~niv~l~g~~~~~~~~  756 (966)
                      .....+|+|++|.||+|+...++..||||++.....      .....+..|+..+.++.   +|||||++++++..++..
T Consensus        34 ~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~~~~  113 (312)
T 2iwi_A           34 RLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEGF  113 (312)
T ss_dssp             EEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-----C
T ss_pred             EEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEecCCeE
Confidence            344567899999999999988999999999854432      12345677888777732   899999999999999999


Q ss_pred             EEEEEc-cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee
Q 002105          757 YLVYEY-IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC  832 (966)
Q Consensus       757 ~lv~Ey-~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~  832 (966)
                      ++|||| +++|+|.+++.   .+++..+..++.|+++||+|||.   .+|+||||||+||+++.+ ...++++|||.+..
T Consensus       114 ~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~-~~~~kl~dfg~~~~  189 (312)
T 2iwi_A          114 MLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHS---RGVVHRDIKDENILIDLR-RGCAKLIDFGSGAL  189 (312)
T ss_dssp             EEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHH---HTEECCCCSGGGEEEETT-TTEEEECCCSSCEE
T ss_pred             EEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChhhEEEeCC-CCeEEEEEcchhhh
Confidence            999999 89999999996   38999999999999999999995   489999999999999832 24688999998765


Q ss_pred             cC----CCCcCCcccccccccCCCCCC-CcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccc
Q 002105          833 TD----SKSINSSAYVAPETKESKDIT-EKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF  907 (966)
Q Consensus       833 ~~----~~~~~~~~y~aPE~~~~~~~~-~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  907 (966)
                      ..    ....|++.|+|||++.+..+. .++|||||||++|||+||+.||...    .   +....     ..      .
T Consensus       190 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~----~---~~~~~-----~~------~  251 (312)
T 2iwi_A          190 LHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERD----Q---EILEA-----EL------H  251 (312)
T ss_dssp             CCSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH----H---HHHHT-----CC------C
T ss_pred             cccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCCh----H---HHhhh-----cc------C
Confidence            32    234688999999998776664 5899999999999999999998642    1   11110     00      0


Q ss_pred             ccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          908 IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       908 ~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +....+      .++.+++.+|++.||++|||++|+++
T Consensus       252 ~~~~~~------~~~~~li~~~l~~~p~~Rps~~e~l~  283 (312)
T 2iwi_A          252 FPAHVS------PDCCALIRRCLAPKPSSRPSLEEILL  283 (312)
T ss_dssp             CCTTSC------HHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             CcccCC------HHHHHHHHHHccCChhhCcCHHHHhc
Confidence            111122      24567888999999999999999986

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.98  E-value=2.7e-32  Score=306.78  Aligned_cols=251  Identities=17%  Similarity=0.225  Sum_probs=182.7

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecC-----CeeEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE-----KAAYLV  759 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~-----~~~~lv  759 (966)
                      .....+|+|++|.||+|+...+|..||||++..... .....+.+|+..+.+ ++|||||++++++..+     ...++|
T Consensus        14 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~~~~~lv   92 (353)
T 2b9h_A           14 QLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKH-FKHENIITIFNIQRPDSFENFNEVYII   92 (353)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHH-CCCTTBCCEEEECCCSCSTTCCCEEEE
T ss_pred             EEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHh-CcCCCcCCeeeeecccccCccceEEEE
Confidence            334557899999999999988899999999854322 223456788888777 6999999999998764     678999


Q ss_pred             EEccCCCCHHHHHHc--CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---
Q 002105          760 YEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~--l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---  834 (966)
                      |||++ |+|.+++..  +++..+..++.|++.||+|||   +.+|+||||||+||+++.+.  .++++|||.+....   
T Consensus        93 ~e~~~-~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~Nil~~~~~--~~kl~Dfg~a~~~~~~~  166 (353)
T 2b9h_A           93 QELMQ-TDLHRVISTQMLSDDHIQYFIYQTLRAVKVLH---GSNVIHRDLKPSNLLINSNC--DLKVCDFGLARIIDESA  166 (353)
T ss_dssp             ECCCS-EEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTC--CEEECCCTTCEECC---
T ss_pred             EeccC-ccHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEcCCC--cEEEEeccccccccccc
Confidence            99998 699999864  899999999999999999999   45899999999999998654  57899999876422   


Q ss_pred             -------------CCCcCCcccccccccC-CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCc-
Q 002105          835 -------------SKSINSSAYVAPETKE-SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCH-  899 (966)
Q Consensus       835 -------------~~~~~~~~y~aPE~~~-~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~-  899 (966)
                                   ....||+.|+|||++. +..++.++|||||||++|||++|+.||.+... .+.. ........... 
T Consensus       167 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-~~~~-~~~~~~~~~~~~  244 (353)
T 2b9h_A          167 ADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDY-RHQL-LLIFGIIGTPHS  244 (353)
T ss_dssp             -------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHH-HHHHHHHCCCCS
T ss_pred             ccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCc-HHHH-HHHHHHhCCCch
Confidence                         1236789999999865 47789999999999999999999999975421 1111 11111110000 


Q ss_pred             ---cccccccc-------ccCCC-cch----HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          900 ---LDTWVDPF-------IRGHV-SSI----QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       900 ---~~~~~d~~-------~~~~~-~~~----~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         ......+.       +.... ...    .....++.+++.+|++.||++|||++|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (353)
T 2b9h_A          245 DNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE  305 (353)
T ss_dssp             TTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence               00000000       00000 000    011235667889999999999999999986

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.98  E-value=4.5e-32  Score=304.93  Aligned_cols=253  Identities=17%  Similarity=0.215  Sum_probs=183.8

Q ss_pred             ccccccCCCCCccEEEEEEEecCC-cEEEEEEEeccCcccccchHHHHHHHHhhcCCCc------eeEEeeEEecCCeeE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLAND-MQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPN------IVRLHGVCRSEKAAY  757 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~-~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~n------iv~l~g~~~~~~~~~  757 (966)
                      +.....+|+|++|.||+|+...++ ..||+|.+... ....+.+..|+..+.+ ++|++      ++.+++++...+..+
T Consensus        21 y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~   98 (355)
T 2eu9_A           21 YEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKK-IKEKDKENKFLCVLMSDWFNFHGHMC   98 (355)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHH-HHHHCTTSCSCBCCEEEEEEETTEEE
T ss_pred             EEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHH-HhhcCCCCceeEEEeeeeeeeCCeEE
Confidence            344556789999999999987666 67888887532 2233456677777766 46655      999999999999999


Q ss_pred             EEEEccCCCCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC---------------
Q 002105          758 LVYEYIEGKELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK---------------  817 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~---------------  817 (966)
                      +||||+ +|++.+++.     .+++.++..++.||+.||+|||   +.+|+||||||+||+++..               
T Consensus        99 lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~  174 (355)
T 2eu9_A           99 IAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLKPENILFVNSEFETLYNEHKSCEEK  174 (355)
T ss_dssp             EEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEESCCCEEEEECCC-CCCEE
T ss_pred             EEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeccccccccccccccccc
Confidence            999999 567777664     3889999999999999999999   5699999999999999542               


Q ss_pred             --CCceEEEeccccceecC---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHH
Q 002105          818 --DEPHLRLSVPGLAYCTD---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWAR  892 (966)
Q Consensus       818 --~~~~~~~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~  892 (966)
                        ....++++|||.+....   ....||+.|+|||++.+..++.++|||||||++|||+||+.||..... .+.. ....
T Consensus       175 ~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~-~~~~-~~~~  252 (355)
T 2eu9_A          175 SVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHEN-REHL-VMME  252 (355)
T ss_dssp             EESCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHH-HHHH
T ss_pred             ccCCCcEEEeecCccccccccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCH-HHHH-HHHH
Confidence              34568999999986532   345789999999999999999999999999999999999999975422 1111 1111


Q ss_pred             HhhccC--------ccccc-cc-------------------ccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 002105          893 YCYSDC--------HLDTW-VD-------------------PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVT  944 (966)
Q Consensus       893 ~~~~~~--------~~~~~-~d-------------------~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~  944 (966)
                      ......        ....+ ..                   +...........+..++.+++.+|++.||++|||++|++
T Consensus       253 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l  332 (355)
T 2eu9_A          253 KILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEAL  332 (355)
T ss_dssp             HHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHT
T ss_pred             HHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHh
Confidence            111000        00000 00                   000000000112344678899999999999999999997


Q ss_pred             H
Q 002105          945 K  945 (966)
Q Consensus       945 ~  945 (966)
                      +
T Consensus       333 ~  333 (355)
T 2eu9_A          333 L  333 (355)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.98  E-value=1.8e-32  Score=308.12  Aligned_cols=248  Identities=19%  Similarity=0.239  Sum_probs=181.4

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCe------eEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKA------AYL  758 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~------~~l  758 (966)
                      ....+|+|++|.||+|+...+|..||||++.....  ...+.+.+|+..+.+ ++|||||++++++...+.      .|+
T Consensus        28 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~~~~~~l  106 (353)
T 3coi_A           28 SPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKH-MQHENVIGLLDVFTPASSLRNFYDFYL  106 (353)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHH-CCCTTBCCCSEEECSCSSGGGCCCCEE
T ss_pred             EeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHh-cCCCCcccHhheEecccccccceeEEE
Confidence            34457899999999999988999999999864322  123456778877777 699999999999987654      499


Q ss_pred             EEEccCCCCHHHHHH-cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---
Q 002105          759 VYEYIEGKELSEVLR-NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~-~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---  834 (966)
                      ||||++ |+|.+++. .+++..+..++.||+.||+|||.   .+|+||||||+||+++.+.  .++++|||.+....   
T Consensus       107 v~e~~~-~~l~~~~~~~~~~~~~~~i~~qi~~al~~LH~---~~ivH~dlkp~NIl~~~~~--~~kl~Dfg~~~~~~~~~  180 (353)
T 3coi_A          107 VMPFMQ-TDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDC--ELKILDFGLARHADAEM  180 (353)
T ss_dssp             EEECCS-EEGGGTTTSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTC--CEEECSTTCTTC-----
T ss_pred             Eecccc-CCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEeECCCC--cEEEeecccccCCCCCc
Confidence            999998 68888775 58999999999999999999994   5899999999999999654  57899999886432   


Q ss_pred             CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhcc----------C-----
Q 002105          835 SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD----------C-----  898 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~----------~-----  898 (966)
                      ....+|+.|+|||++.+ ..++.++|||||||++|||+||+.||.+... .+.+.......-..          .     
T Consensus       181 ~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  259 (353)
T 3coi_A          181 TGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDY-LDQLTQILKVTGVPGTEFVQKLNDKAAKSY  259 (353)
T ss_dssp             ---CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCH-HHHHHHHHHHHCBCCHHHHTTCSCHHHHHH
T ss_pred             cccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHHHHHHhhHHHHHH
Confidence            23467999999999876 6789999999999999999999999975421 11111111100000          0     


Q ss_pred             --cccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          899 --HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       899 --~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                        .......+......+   ....++.+++.+|++.||++|||++|+++
T Consensus       260 ~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~L~~dp~~Rpt~~e~l~  305 (353)
T 3coi_A          260 IQSLPQTPRKDFTQLFP---RASPQAADLLEKMLELDVDKRLTAAQALT  305 (353)
T ss_dssp             HHTSCBCSSCCTTTTCT---TSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             HHhCcCCCCccHHHhcC---CcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence              000000000000011   11235667888999999999999999975

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.98  E-value=5e-33  Score=329.50  Aligned_cols=257  Identities=20%  Similarity=0.260  Sum_probs=188.5

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEecc-CcccccchHHHHHHHHhhcCCCceeEEeeEEec------CCeeE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV-NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS------EKAAY  757 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~-~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~------~~~~~  757 (966)
                      +.....+|.||+|.||+|+...+|..||||++... .....+.+.+|+..+.+ ++|||||++++++..      ++..+
T Consensus        16 Y~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~-L~HpnIV~l~~v~~~~~~~~~~~~~~   94 (676)
T 3qa8_A           16 WEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKK-LNHPNVVSAREVPDGLQKLAPNDLPL   94 (676)
T ss_dssp             -CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHH-CCBTTBCCEEECCTTTCCCCTTSSCC
T ss_pred             eEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHh-CCCCCCCceeeeecccccccCCCeEE
Confidence            34455679999999999999888999999987543 22233457788888877 699999999999865      67789


Q ss_pred             EEEEccCCCCHHHHHHc------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC-ceEEEeccccc
Q 002105          758 LVYEYIEGKELSEVLRN------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE-PHLRLSVPGLA  830 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~~------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~-~~~~~~~~~~~  830 (966)
                      +|||||++|+|.++++.      +++..+..++.+++.||+|||.   .+|+||||||+||+++.+.. ..++++|||.+
T Consensus        95 LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs---~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a  171 (676)
T 3qa8_A           95 LAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHE---NRIIHRDLKPENIVLQPGPQRLIHKIIDLGYA  171 (676)
T ss_dssp             CEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHH---TTBCCCCCCSTTEEEECCSSSCEEEECSCCCC
T ss_pred             EEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEeecCCCceeEEEcccccc
Confidence            99999999999999973      7889999999999999999994   58999999999999986543 44789999998


Q ss_pred             eecC-----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccc--
Q 002105          831 YCTD-----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTW--  903 (966)
Q Consensus       831 ~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--  903 (966)
                      ....     ....||+.|+|||++.+..++.++|||||||++|||+||+.||.....    ...|.............  
T Consensus       172 ~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~----~~~~~~~i~~~~~~~~~~~  247 (676)
T 3qa8_A          172 KELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQ----PVQWHGKVREKSNEHIVVY  247 (676)
T ss_dssp             CBTTSCCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCH----HHHSSTTCC------CCSC
T ss_pred             cccccccccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccc----hhhhhhhhhcccchhhhhh
Confidence            6532     234689999999999999999999999999999999999999975321    11221111000000000  


Q ss_pred             --------ccccc--cCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHH-----HHHHHHHhh
Q 002105          904 --------VDPFI--RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASD-----VTKTLESCF  951 (966)
Q Consensus       904 --------~d~~~--~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~-----v~~~L~~~~  951 (966)
                              .....  .....  .....++.+++.+|++.||++|||++|     ..+.+++.+
T Consensus       248 ~~l~g~~~~~~~lp~p~~l~--~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL  308 (676)
T 3qa8_A          248 DDLTGAVKFSSVLPTPNHLS--GILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSIL  308 (676)
T ss_dssp             CCCSSSCCCCSSSCCSCCCC--GGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHH
T ss_pred             hhhccccccccccCCchhhc--hhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHH
Confidence                    00000  00111  122345677888999999999999988     456666633

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=8.5e-31  Score=291.81  Aligned_cols=292  Identities=24%  Similarity=0.286  Sum_probs=202.2

Q ss_pred             CCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceE
Q 002105          129 GSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKW  208 (966)
Q Consensus       129 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  208 (966)
                      +...+|+.+++++|.++ .+|..+.  ++|++|+|++|.+.+..|..|.++++|++|++++|++++..|..++++++|++
T Consensus        30 ~c~c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  106 (332)
T 2ft3_A           30 GCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK  106 (332)
T ss_dssp             SCEEETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred             CCcccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence            33447899999999887 5666653  68888999998888777778888888888888888888877888888888888


Q ss_pred             EEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccC--CCCChhhhcCCCCCEEEccCC
Q 002105          209 IYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLT--GSIPKSILGLKSLVSFDLSDN  286 (966)
Q Consensus       209 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~N  286 (966)
                      |++++|.++ .+|..+.  ++|++|++++|++++..+..|.++++|++|++++|.++  +..+..+..+ +|+.|++++|
T Consensus       107 L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n  182 (332)
T 2ft3_A          107 LYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA  182 (332)
T ss_dssp             EECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred             EECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence            888888887 5565554  67777777777777655556777777777777777774  2455556555 6666666666


Q ss_pred             cCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCC
Q 002105          287 YLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPE  366 (966)
Q Consensus       287 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~  366 (966)
                      .+++ +|..+.  ++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.++     
T Consensus       183 ~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----  254 (332)
T 2ft3_A          183 KLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-----  254 (332)
T ss_dssp             BCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-----
T ss_pred             CCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-----
Confidence            6664 343332  45666666666666555555666666666666666665554445555555555555555554     


Q ss_pred             CccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcC------CCcccEEcccCCCCC--CccCc
Q 002105          367 TLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTR------LPLVYFLDISGNDLS--GRIGE  438 (966)
Q Consensus       367 ~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~LdLs~N~l~--~~~~~  438 (966)
                                          .+|..+..+++|++|++++|++++..+..|..      .+.++.|++++|.+.  +..|.
T Consensus       255 --------------------~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~  314 (332)
T 2ft3_A          255 --------------------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA  314 (332)
T ss_dssp             --------------------BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG
T ss_pred             --------------------ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcc
Confidence                                34445556666666666666666665555543      467899999999998  66777


Q ss_pred             chhccCCCcEecCCCCc
Q 002105          439 QKWEMTSLQMLNLAGNN  455 (966)
Q Consensus       439 ~~~~l~~L~~L~Ls~N~  455 (966)
                      .+..+++|+.+++++|+
T Consensus       315 ~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          315 TFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGTTBCCSTTEEC----
T ss_pred             cccccchhhhhhccccc
Confidence            88899999999999985

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.2e-30  Score=290.27  Aligned_cols=293  Identities=24%  Similarity=0.306  Sum_probs=144.3

Q ss_pred             CCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCC--CCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEc
Q 002105           86 HVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDL  163 (966)
Q Consensus        86 ~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  163 (966)
                      +++.++++++.+. .+|..+.   +.|++|+|++|.+++..+  ++.+++|++|+|++|.+++..|..|..+++|++|+|
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            4666777777666 5554332   445555555555554222  344555555555555555444555555555555555


Q ss_pred             cCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccc-
Q 002105          164 GGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG-  242 (966)
Q Consensus       164 ~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-  242 (966)
                      ++|.+. .+|..+.  ++|++|++++|.+.+..+.                        .+.++++|++|++++|.+.. 
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~------------------------~~~~l~~L~~L~l~~n~l~~~  160 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKS------------------------VFNGLNQMIVVELGTNPLKSS  160 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHH------------------------HHTTCTTCCEEECCSSCCCGG
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHh------------------------HhcCCccccEEECCCCcCCcc
Confidence            555444 2333222  3444444444444443333                        34444444444444444431 


Q ss_pred             -cCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCC
Q 002105          243 -QIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLA  321 (966)
Q Consensus       243 -~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~  321 (966)
                       ..+..+.++++|++|++++|+++. +|..+.  ++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+.
T Consensus       161 ~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  237 (330)
T 1xku_A          161 GIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  237 (330)
T ss_dssp             GBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             CcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence             334444445555555555554442 232222  4555555555555554455555555555555555555544444555


Q ss_pred             CCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCcee
Q 002105          322 SMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRV  401 (966)
Q Consensus       322 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L  401 (966)
                      .+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++..+..|+...                  ......+++.|
T Consensus       238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l  298 (330)
T 1xku_A          238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGV  298 (330)
T ss_dssp             GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEE
T ss_pred             CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccce
Confidence            5555555555555555 4455555555555555555555544444443210                  00112445555


Q ss_pred             eccccccCC--cCChhhcCCCcccEEcccCCC
Q 002105          402 RLQNNRLSG--ELSSEFTRLPLVYFLDISGND  431 (966)
Q Consensus       402 ~L~~N~l~~--~~~~~~~~l~~L~~LdLs~N~  431 (966)
                      ++++|.+..  ..|..|..+..++.++|++|+
T Consensus       299 ~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             ECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             EeecCcccccccCccccccccceeEEEecccC
Confidence            666665542  445566666666666666663

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.5e-30  Score=289.47  Aligned_cols=290  Identities=24%  Similarity=0.297  Sum_probs=175.2

Q ss_pred             CCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEc
Q 002105          132 SRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYL  211 (966)
Q Consensus       132 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  211 (966)
                      .+|++++++++.++ .+|..+.  ++|++|+|++|.+++..+..|.++++|++|++++|++++..|..++.+++|++|++
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            35566666666655 3444332  45666666666665555555556666666666666655555555566666666666


Q ss_pred             cCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCC--CCChhhhcCCCCCEEEccCCcCc
Q 002105          212 GYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTG--SIPKSILGLKSLVSFDLSDNYLS  289 (966)
Q Consensus       212 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~  289 (966)
                      ++|.++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+..  ..+..+.++++|++|++++|.++
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            666555 3444332  456666666666665555555666666666666665532  34444555555555555555544


Q ss_pred             ccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCcc
Q 002105          290 GEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLC  369 (966)
Q Consensus       290 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~  369 (966)
                                              . +|..+.  ++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+.
T Consensus       185 ------------------------~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  237 (330)
T 1xku_A          185 ------------------------T-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  237 (330)
T ss_dssp             ------------------------S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             ------------------------c-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence                                    2 232222  4555666666666555555556666666666666666655555566


Q ss_pred             CCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcC------CCcccEEcccCCCCCC--ccCcchh
Q 002105          370 DSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTR------LPLVYFLDISGNDLSG--RIGEQKW  441 (966)
Q Consensus       370 ~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~LdLs~N~l~~--~~~~~~~  441 (966)
                      .+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..|..      .+.++.|++++|.+..  ..|..+.
T Consensus       238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~  316 (330)
T 1xku_A          238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR  316 (330)
T ss_dssp             GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred             CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence            6666666666666665 55666777777777777777777776666643      4788999999999874  5567788


Q ss_pred             ccCCCcEecCCCCc
Q 002105          442 EMTSLQMLNLAGNN  455 (966)
Q Consensus       442 ~l~~L~~L~Ls~N~  455 (966)
                      .+.+++.++|++|+
T Consensus       317 ~~~~l~~l~L~~N~  330 (330)
T 1xku_A          317 CVYVRAAVQLGNYK  330 (330)
T ss_dssp             TCCCGGGEEC----
T ss_pred             cccceeEEEecccC
Confidence            89999999999985

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.97  E-value=2.7e-32  Score=333.06  Aligned_cols=234  Identities=19%  Similarity=0.268  Sum_probs=179.5

Q ss_pred             cccccCCCCCccEEEEEEEec-CCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCe-----eEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLA-NDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKA-----AYL  758 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~-~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~-----~~l  758 (966)
                      .....+|+||+|.||++++.. +|+.||||++..... .....+.+|+..+.+ ++|||||++++++...+.     .|+
T Consensus        83 ~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~~~~~~~~l  161 (681)
T 2pzi_A           83 EVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAE-VVHPSIVQIFNFVEHTDRHGDPVGYI  161 (681)
T ss_dssp             EEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGG-CCCTTBCCEEEEEEEECTTSCEEEEE
T ss_pred             EEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHh-cCCCCcCeEeeeEeecCCCCCceeEE
Confidence            344557899999999999865 788999998754322 223456777777776 799999999999987655     799


Q ss_pred             EEEccCCCCHHHHHH-cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--C
Q 002105          759 VYEYIEGKELSEVLR-NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--S  835 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~-~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--~  835 (966)
                      |||||+||+|.+++. .++|.++..++.||++||+|||.   .+||||||||+||+++.+   .++++|||++....  .
T Consensus       162 v~E~~~g~~L~~~~~~~l~~~~~~~~~~qi~~aL~~lH~---~giiHrDlkp~NIll~~~---~~kl~DFG~a~~~~~~~  235 (681)
T 2pzi_A          162 VMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHS---IGLVYNDLKPENIMLTEE---QLKLIDLGAVSRINSFG  235 (681)
T ss_dssp             EEECCCCEECC----CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECSS---CEEECCCTTCEETTCCS
T ss_pred             EEEeCCCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH---CCCeecccChHHeEEeCC---cEEEEecccchhcccCC
Confidence            999999999999886 58999999999999999999994   589999999999999864   67999999987543  3


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...||++|||||++.+. ++.++|||||||++|||++|..|+......               ..   .     .. ...
T Consensus       236 ~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~---------------~~---~-----~~-~~~  290 (681)
T 2pzi_A          236 YLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVD---------------GL---P-----ED-DPV  290 (681)
T ss_dssp             CCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECS---------------SC---C-----TT-CHH
T ss_pred             ccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCcccccc---------------cc---c-----cc-ccc
Confidence            45689999999998765 488999999999999999999887542100               00   0     00 000


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCC-HHHHHHHHHHhh
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPC-ASDVTKTLESCF  951 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt-~~~v~~~L~~~~  951 (966)
                      ......+.+++.+|++.||++||+ ++++...|...+
T Consensus       291 ~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~  327 (681)
T 2pzi_A          291 LKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVL  327 (681)
T ss_dssp             HHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHH
Confidence            112235677889999999999995 666777776543

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.97  E-value=9.3e-32  Score=294.93  Aligned_cols=221  Identities=20%  Similarity=0.288  Sum_probs=168.1

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEec----CCeeEEEEEccCC
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS----EKAAYLVYEYIEG  765 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~----~~~~~lv~Ey~~~  765 (966)
                      .+|+|++|.||++....++..||+|++..     ...+.+|+..+.+..+|||||++++++..    ++..++||||+++
T Consensus        25 ~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~   99 (299)
T 3m2w_A           25 VLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDG   99 (299)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEECCCCS
T ss_pred             ccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEeecCC
Confidence            36899999999999988999999999853     24567788887777899999999999976    6778999999999


Q ss_pred             CCHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC-CceEEEeccccceecCCCCcC
Q 002105          766 KELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAYCTDSKSIN  839 (966)
Q Consensus       766 g~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~-~~~~~~~~~~~~~~~~~~~~~  839 (966)
                      |+|.++++.     +++..+..++.|++.||+|||   +.+|+||||||+||+++.+. ...++++|||.+....     
T Consensus       100 ~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~-----  171 (299)
T 3m2w_A          100 GELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-----  171 (299)
T ss_dssp             CBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECT-----
T ss_pred             CcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEecCCCCCcEEEeccccccccc-----
Confidence            999999963     889999999999999999999   45899999999999999643 4568999999875322     


Q ss_pred             CcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccc-cccCCCcchHHH
Q 002105          840 SSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDP-FIRGHVSSIQNE  918 (966)
Q Consensus       840 ~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~  918 (966)
                                 +..++.++|||||||++|||+||+.||.......     ................| ......      
T Consensus       172 -----------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~------  229 (299)
T 3m2w_A          172 -----------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA-----ISPGMKTRIRMGQYEFPNPEWSEV------  229 (299)
T ss_dssp             -----------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC------------CCSCCSSCTTCCSSCHHHHTTS------
T ss_pred             -----------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchh-----hhHHHHHHHhhccccCCchhcccC------
Confidence                       3457889999999999999999999996532110     00000000000000000 000111      


Q ss_pred             HHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          919 IVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       919 ~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ..++.+++.+|++.||++|||+.|+++
T Consensus       230 ~~~~~~li~~~l~~dP~~Rps~~e~l~  256 (299)
T 3m2w_A          230 SEEVKMLIRNLLKTEPTQRMTITEFMN  256 (299)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            235667888999999999999999986

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.97  E-value=9.6e-31  Score=299.93  Aligned_cols=226  Identities=15%  Similarity=0.139  Sum_probs=161.0

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc---ccchHHHHHHHHhhcCC-Cce---------------eE----
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---TSSFWPDVSQFGKLIMH-PNI---------------VR----  745 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---~~~~~~e~~~~~~~~~H-~ni---------------v~----  745 (966)
                      ..+|+||||.||+|++..+|..||||++.......   .+.+.+|+..+.. ++| +|.               +.    
T Consensus        84 ~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (413)
T 3dzo_A           84 TVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRL-LRGIKNQKQAKVHLRFIFPFDLVKDPQK  162 (413)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGG-STTCCSHHHHHHHTCBCCCCEEEECCC-
T ss_pred             cccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHh-hccCCCHHHHHHhcccccchhhcccCCC
Confidence            34789999999999998899999999886332222   3456666666555 566 221               11    


Q ss_pred             --EeeEEec-----CCeeEEEEEccCCCCHHHHHH----------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCC
Q 002105          746 --LHGVCRS-----EKAAYLVYEYIEGKELSEVLR----------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVS  808 (966)
Q Consensus       746 --l~g~~~~-----~~~~~lv~Ey~~~g~L~~~l~----------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk  808 (966)
                        +..++..     ....+++|+++ +|+|.++++          .++|..+..++.||++||+|||   +.+|||||||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~iiHrDiK  238 (413)
T 3dzo_A          163 KKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLVHTYLR  238 (413)
T ss_dssp             --------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred             CccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcc
Confidence              1111111     12356777765 589999884          2678899999999999999999   4589999999


Q ss_pred             CCcEEEcCCCCceEEEeccccceec---CCCCcCCccccccccc----------CCCCCCCcchHHHHHHHHHHHHcCCC
Q 002105          809 PGKVIVDGKDEPHLRLSVPGLAYCT---DSKSINSSAYVAPETK----------ESKDITEKGDIYGFGLILIDLLTGKS  875 (966)
Q Consensus       809 ~~Nill~~~~~~~~~~~~~~~~~~~---~~~~~~~~~y~aPE~~----------~~~~~~~~~Dv~S~Gv~l~el~tg~~  875 (966)
                      |+|||++.+..  ++++|||++...   .....| +.|||||++          ....++.++|||||||++|||+||+.
T Consensus       239 p~NILl~~~~~--~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~  315 (413)
T 3dzo_A          239 PVDIVLDQRGG--VFLTGFEHLVRDGASAVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADL  315 (413)
T ss_dssp             GGGEEECTTCC--EEECCGGGCEETTEEECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSC
T ss_pred             cceEEEecCCe--EEEEeccceeecCCccccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCC
Confidence            99999997655  799999997643   234467 999999998          66678999999999999999999999


Q ss_pred             CCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 002105          876 PADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVT  944 (966)
Q Consensus       876 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~  944 (966)
                      ||...... +             .    .+..+... ....   .++.+++.+||+.||++||++.|++
T Consensus       316 Pf~~~~~~-~-------------~----~~~~~~~~-~~~~---~~~~~li~~~l~~dP~~Rpt~~~~l  362 (413)
T 3dzo_A          316 PNTDDAAL-G-------------G----SEWIFRSC-KNIP---QPVRALLEGFLRYPKEDRLLPLQAM  362 (413)
T ss_dssp             CCCTTGGG-S-------------C----SGGGGSSC-CCCC---HHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred             CCCCcchh-h-------------h----HHHHHhhc-ccCC---HHHHHHHHHHccCChhhCcCHHHHH
Confidence            99753210 0             0    11111100 0111   2466778899999999999977664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3.5e-34  Score=334.53  Aligned_cols=378  Identities=22%  Similarity=0.201  Sum_probs=208.9

Q ss_pred             CCCCEEEccCCCCcccCCcc-cccCCcceEEEccCCCCCC----CCCcCccCCCCCCEEEeecccccccCCcCC-CCCC-
Q 002105          180 TSLQIFTLASNQLIGSIPRE-IGQLRNLKWIYLGYNNLSG----EIPKEIGDLTSLNHLDLVYNNLTGQIPPSF-GNLS-  252 (966)
Q Consensus       180 ~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~-  252 (966)
                      ++|++|++++|+++...... +..+++|++|+|++|.++.    .++..+..+++|++|++++|.+....+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            34566666666654332222 4455566666666666542    223444555556666666655543222111 1222 


Q ss_pred             ---ccceEeccccccCC----CCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCC
Q 002105          253 ---NLRYLFLYQNKLTG----SIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPK  325 (966)
Q Consensus       253 ---~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  325 (966)
                         +|++|++++|+++.    .++..+..+++|++|++++|.+++..+..+...                   .....++
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~-------------------l~~~~~~  143 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG-------------------LLDPQCR  143 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH-------------------HTSTTCC
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH-------------------HhcCCCc
Confidence               45555555555542    234445555555555555555543322222110                   0112334


Q ss_pred             ccEEEccCCcCccc----CCccccCCCCCcEEEccCCcccccCCCCcc-----CCCCccEEEccCCCCCCC----CCCcc
Q 002105          326 LQVLQLWSNQFSGE----IPSNLGKQNNLTVIDLSTNFLTGKIPETLC-----DSGSLFKLILFSNSLEGK----IPNSL  392 (966)
Q Consensus       326 L~~L~L~~N~l~~~----~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~-----~~~~L~~L~l~~N~l~~~----~p~~~  392 (966)
                      |++|++++|.+++.    ++..+..+++|+.|++++|.++...+..+.     ..++|+.|++++|.+++.    ++..+
T Consensus       144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  223 (461)
T 1z7x_W          144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV  223 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred             ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence            55555555555432    233344445555555555555433222222     133555566666655543    35555


Q ss_pred             ccCccCceeeccccccCCcC-----ChhhcCCCcccEEcccCCCCCCc----cCcchhccCCCcEecCCCCcCCccCCCC
Q 002105          393 STCKSLRRVRLQNNRLSGEL-----SSEFTRLPLVYFLDISGNDLSGR----IGEQKWEMTSLQMLNLAGNNFSGKLPDS  463 (966)
Q Consensus       393 ~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~LdLs~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  463 (966)
                      ..+++|++|++++|++++..     +..+..+++|++|++++|.+++.    ++..+..+++|++|+|++|.+++..+..
T Consensus       224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  303 (461)
T 1z7x_W          224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL  303 (461)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence            66777777777777766532     22233577778888888877754    4555566777888888877775432221


Q ss_pred             c------Cccccccccccccccccc----CCCcccCcCCCCEEEccCCccCCCChhhccc-----cccccccccCCceec
Q 002105          464 F------GSDQLENLDLSENRFSGT----IPRSFGRLSELMQLKISRNKLFGDIPEELSS-----CKKLVSLDLSNNQLS  528 (966)
Q Consensus       464 ~------~~~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~  528 (966)
                      +      ..++|++|++++|.+++.    ++..+..+++|+.|+|++|++.+..+..+..     .++|+.|+|++|.++
T Consensus       304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            1      124677777777777654    3455666777888888888776655554443     567888888888877


Q ss_pred             c----ccCccCCCCCCCcEEeCCCCcCcccCCcccc-----cCCCCCeeeCcCCccc
Q 002105          529 G----HIPASLSEMPVLGQLDLSENQLSGKIPQTLG-----RVASLVQVNISHNHFH  576 (966)
Q Consensus       529 ~----~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~-----~l~~L~~l~ls~N~l~  576 (966)
                      +    .+|..+..+++|+.|||++|++++.-...+.     ....|+.|++.++.+.
T Consensus       384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             hhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence            5    6677777777788888888877754111111     1235666666666554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=6.1e-34  Score=332.46  Aligned_cols=356  Identities=19%  Similarity=0.203  Sum_probs=162.0

Q ss_pred             CEEEEEcCCCCcccccccc-ccCCCCCCEEEcCCCCCccc----cChhhhhcCCCCcEEECCCCCCCCCCC---CCCCC-
Q 002105           62 HVNAIELSAKNISGKISSS-IFHLPHVESINLSSNQLSGE----IPSDIFSSSNSLRFLNLSNNNFTGPVP---IGSLS-  132 (966)
Q Consensus        62 ~v~~L~L~~~~l~~~~~~~-~~~l~~L~~L~Ls~N~l~g~----ip~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~l~-  132 (966)
                      +++.|||++++++...... +..+++|++|+|++|.+.+.    ++ ..+..+++|++|+|++|.+++..+   ...+. 
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            3455666666555433222 44555666666666655421    12 223334555555555555543111   01122 


Q ss_pred             ---CCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccc-----cCC
Q 002105          133 ---RLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIG-----QLR  204 (966)
Q Consensus       133 ---~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~  204 (966)
                         +|++|+|++|.++..-                    ...+|..+..+++|++|++++|.+....+..+.     ..+
T Consensus        83 ~~~~L~~L~L~~n~i~~~~--------------------~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  142 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAG--------------------CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC  142 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGG--------------------HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             CCCceeEEEccCCCCCHHH--------------------HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence               3555555555444200                    012334444444444444444444332222211     123


Q ss_pred             cceEEEccCCCCCCCC----CcCccCCCCCCEEEeecccccccCCcCCC-----CCCccceEeccccccCCC----CChh
Q 002105          205 NLKWIYLGYNNLSGEI----PKEIGDLTSLNHLDLVYNNLTGQIPPSFG-----NLSNLRYLFLYQNKLTGS----IPKS  271 (966)
Q Consensus       205 ~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~----~p~~  271 (966)
                      +|++|++++|.+++..    +..+..+++|++|++++|.+....+..+.     .+++|++|++++|.+++.    ++..
T Consensus       143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  222 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI  222 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence            4555555555544321    23344445555555555555432222221     234566666666655542    3444


Q ss_pred             hhcCCCCCEEEccCCcCcccCc-----hhhcCCCCCceecccCCCCCCC----CCCCCCCCCCccEEEccCCcCcccCCc
Q 002105          272 ILGLKSLVSFDLSDNYLSGEIP-----EEVIQLQNLEILHLFSNNFTGK----IPSSLASMPKLQVLQLWSNQFSGEIPS  342 (966)
Q Consensus       272 l~~l~~L~~L~Ls~N~l~~~~p-----~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~  342 (966)
                      +..+++|++|++++|.+++...     ..+..+++|+.|++++|.++..    ++..+..+++|++|++++|.+.+..+.
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            5555666666666665543221     1111344455555555544432    233333344455555555444332221


Q ss_pred             cccC-----CCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhc
Q 002105          343 NLGK-----QNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFT  417 (966)
Q Consensus       343 ~~~~-----~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~  417 (966)
                      .+..     .++|+.|++++|.+++....                    .++..+..+++|++|++++|++++..+..+.
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~  362 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCS--------------------HFSSVLAQNRFLLELQISNNRLEDAGVRELC  362 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHH--------------------HHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHH--------------------HHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence            1111     13444444444444322000                    0233344455666666666665544333332


Q ss_pred             C-----CCcccEEcccCCCCCC----ccCcchhccCCCcEecCCCCcCCc
Q 002105          418 R-----LPLVYFLDISGNDLSG----RIGEQKWEMTSLQMLNLAGNNFSG  458 (966)
Q Consensus       418 ~-----l~~L~~LdLs~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~  458 (966)
                      .     .++|++|++++|.+++    .++..+..+++|++|++++|++++
T Consensus       363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            1     4566666666666664    455555566666666666666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.1e-29  Score=285.41  Aligned_cols=285  Identities=21%  Similarity=0.239  Sum_probs=204.3

Q ss_pred             CCCCCCCCCcccceeeCCCCCEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCC
Q 002105           42 NWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNN  121 (966)
Q Consensus        42 ~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~  121 (966)
                      .|.....+|.|.|+ |+         +++++++ .+|..+.  ++|++|+|++|+++ .+|...+..+++|++|+|++|.
T Consensus        22 ~~~~~~~~C~~~~~-c~---------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~   87 (353)
T 2z80_A           22 SSNQASLSCDRNGI-CK---------GSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNG   87 (353)
T ss_dssp             -----CCEECTTSE-EE---------CCSTTCS-SCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSC
T ss_pred             CCCccCCCCCCCeE-ee---------CCCCCcc-ccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCc
Confidence            34444578999988 74         4566666 4455554  48999999999998 5777667777889999999988


Q ss_pred             CCCCCC--CCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCC-cCCCCCCCCCEEEccCCC-CcccCC
Q 002105          122 FTGPVP--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIP-LSISNITSLQIFTLASNQ-LIGSIP  197 (966)
Q Consensus       122 l~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~n~-l~~~~p  197 (966)
                      +++..+  ++.+++|++|+|++|++++..+..+..+++|++|+|++|.+.+..+ ..+.++++|++|++++|. +....+
T Consensus        88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~  167 (353)
T 2z80_A           88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR  167 (353)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred             cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH
Confidence            886443  6788888888888888886555558888888888888888875433 367888888888888884 666666


Q ss_pred             cccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhh---c
Q 002105          198 REIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSIL---G  274 (966)
Q Consensus       198 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~---~  274 (966)
                      ..++.+++|++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|++|++++|++++..+..+.   .
T Consensus       168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~  247 (353)
T 2z80_A          168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET  247 (353)
T ss_dssp             TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred             HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccc
Confidence            7788888888888888888877788888888888888888887643333345577888888888888765544332   3


Q ss_pred             CCCCCEEEccCCcCcc----cCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccC
Q 002105          275 LKSLVSFDLSDNYLSG----EIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEI  340 (966)
Q Consensus       275 l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  340 (966)
                      ...++.++++++.+++    .+|..+..+++|+.|++++|+++...+..|..+++|++|++++|.+.+..
T Consensus       248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            4567777777777765    35666777777777777777777433333467777777777777766544

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.96  E-value=5.5e-31  Score=293.86  Aligned_cols=190  Identities=13%  Similarity=0.088  Sum_probs=150.7

Q ss_pred             ccccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc--------cccchHHHHHHHHhhc--------CCCceeEE
Q 002105          683 TTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI--------TTSSFWPDVSQFGKLI--------MHPNIVRL  746 (966)
Q Consensus       683 ~~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~--------~~~~~~~e~~~~~~~~--------~H~niv~l  746 (966)
                      ..+.....+|+|++|.||+|+.  +|..||||++......        ..+.+.+|+..+.++-        +|||||++
T Consensus        20 ~~y~~~~~lG~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l   97 (336)
T 2vuw_A           20 EKLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL   97 (336)
T ss_dssp             HHHHTCEEEEEETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred             ccchheeeecccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence            3345556789999999999986  7899999999754321        1245778887776632        37777777


Q ss_pred             eeEEe------------------------------cCCeeEEEEEccCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHH
Q 002105          747 HGVCR------------------------------SEKAAYLVYEYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFL  794 (966)
Q Consensus       747 ~g~~~------------------------------~~~~~~lv~Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yL  794 (966)
                      .+++.                              .++..|+|||||++|++.+.+.  .+++.....++.||+.||+||
T Consensus        98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi~~aL~~l  177 (336)
T 2vuw_A           98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVA  177 (336)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            77643                              2678999999999997665553  479999999999999999999


Q ss_pred             h-hcCCCCeEeecCCCCcEEEcCCC------------------CceEEEeccccceec-CCCCcCCcccccccccCCCCC
Q 002105          795 H-FHCSPSVVAGDVSPGKVIVDGKD------------------EPHLRLSVPGLAYCT-DSKSINSSAYVAPETKESKDI  854 (966)
Q Consensus       795 H-~~~~~~iiHrDlk~~Nill~~~~------------------~~~~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~  854 (966)
                      | ..   +||||||||+|||++.+.                  ...++++|||++... .....||+.|||||++.+.. 
T Consensus       178 H~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~~~~gt~~y~aPE~~~g~~-  253 (336)
T 2vuw_A          178 EASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDG-  253 (336)
T ss_dssp             HHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETTEEECCCCTTCSGGGCCCS-
T ss_pred             HHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCCcEEEeecccChhhhcCCC-
Confidence            9 55   799999999999998764                  137899999998753 33457999999999998776 


Q ss_pred             CCcchHHHHHHH-HHHHHcCCCCCC
Q 002105          855 TEKGDIYGFGLI-LIDLLTGKSPAD  878 (966)
Q Consensus       855 ~~~~Dv~S~Gv~-l~el~tg~~p~~  878 (966)
                      +.++||||+|++ .+++.+|..||.
T Consensus       254 ~~~~Diwsl~~~~~~~~~~g~~p~~  278 (336)
T 2vuw_A          254 DYQFDIYRLMKKENNNRWGEYHPYS  278 (336)
T ss_dssp             SHHHHHHHHHHHHHTTCTTSCCTHH
T ss_pred             ccceehhhhhCCCCcccccccCCCc
Confidence            889999998777 778899999974

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.2e-28  Score=271.70  Aligned_cols=251  Identities=21%  Similarity=0.161  Sum_probs=127.7

Q ss_pred             CCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCC--CCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCE
Q 002105           83 HLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKV  160 (966)
Q Consensus        83 ~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  160 (966)
                      .++.....|+++|.++ .+|..++   ++|++|+|++|.+++..+  +..+++|++|+|++|.+++..|..|.++++|++
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            3445556777777776 6776443   355555555555554222  344555555555555555444444555555555


Q ss_pred             EEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCC-cCccCCCCCCEEEeecc-
Q 002105          161 LDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIP-KEIGDLTSLNHLDLVYN-  238 (966)
Q Consensus       161 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N-  238 (966)
                      |+|++|.+++..                        +..++++++|++|++++|.+++..+ ..+.++++|++|++++| 
T Consensus       105 L~Ls~n~l~~~~------------------------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~  160 (353)
T 2z80_A          105 LDLSYNYLSNLS------------------------SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD  160 (353)
T ss_dssp             EECCSSCCSSCC------------------------HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             EECCCCcCCcCC------------------------HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc
Confidence            555555444333                        3334444555555555554442222 24455555555555555 


Q ss_pred             cccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCC
Q 002105          239 NLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPS  318 (966)
Q Consensus       239 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  318 (966)
                      .+....|..|+++++|++|++++|++++..|..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+.
T Consensus       161 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  240 (353)
T 2z80_A          161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS  240 (353)
T ss_dssp             SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred             cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence            24433444455555555555555555554455555555555555555555432222233355555555555555543332


Q ss_pred             CC---CCCCCccEEEccCCcCcc----cCCccccCCCCCcEEEccCCccc
Q 002105          319 SL---ASMPKLQVLQLWSNQFSG----EIPSNLGKQNNLTVIDLSTNFLT  361 (966)
Q Consensus       319 ~l---~~l~~L~~L~L~~N~l~~----~~p~~~~~~~~L~~L~Ls~N~l~  361 (966)
                      .+   ...+.++.++++++.+.+    .+|..+..+++|+.|++++|.++
T Consensus       241 ~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~  290 (353)
T 2z80_A          241 ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK  290 (353)
T ss_dssp             ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred             ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence            22   224456666666666654    24555566666666666666665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=6.6e-28  Score=267.40  Aligned_cols=225  Identities=22%  Similarity=0.297  Sum_probs=150.6

Q ss_pred             CCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEc
Q 002105          132 SRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYL  211 (966)
Q Consensus       132 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  211 (966)
                      .++++|+|++|.++ .+|..+..+++|++|+|++|.+. .+|..++++++|++|++++|.++ .+|..++++++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            34555555555554 45556666666666666666666 56666666666666666666666 55666666666666666


Q ss_pred             cCCCCCCCCCcCcc---------CCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEE
Q 002105          212 GYNNLSGEIPKEIG---------DLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFD  282 (966)
Q Consensus       212 ~~N~l~~~~p~~l~---------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  282 (966)
                      ++|++.+.+|..++         ++++|++|++++|+++ .+|..++++++|++|+|++|++++ +|..+..+++|++|+
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD  235 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEE
Confidence            66666666666554         4777777777777777 567777777777777777777764 455677777777777


Q ss_pred             ccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCccc
Q 002105          283 LSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLT  361 (966)
Q Consensus       283 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~  361 (966)
                      +++|.+.+.+|..+..+++|+.|++++|++.+.+|..+.++++|+.|+|++|.+.+.+|..++.+++|+.+++..|.+.
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            7777777677766667777777777776666666666666777777777776666666766666666666666655443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.7e-31  Score=322.06  Aligned_cols=325  Identities=16%  Similarity=0.067  Sum_probs=142.4

Q ss_pred             CCCCcCEEEccCCCCccc----CCcCCCCCCCCCEEEccCCCCc----ccCCcccccCCcceEEEccCCCCCCCCCcCcc
Q 002105          154 SFSGLKVLDLGGNVLVGE----IPLSISNITSLQIFTLASNQLI----GSIPREIGQLRNLKWIYLGYNNLSGEIPKEIG  225 (966)
Q Consensus       154 ~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~  225 (966)
                      .+++|++|+|++|.+++.    ++..+.++++|++|++++|.++    +.++..+.++++|++|++++|.+.+ +|..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            445555555555544332    2222334455555555555544    1223333444555555555555443 344445


Q ss_pred             CCCCCCEEEeeccccc---ccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCc-hhhcCCCC
Q 002105          226 DLTSLNHLDLVYNNLT---GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIP-EEVIQLQN  301 (966)
Q Consensus       226 ~l~~L~~L~Ls~N~l~---~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~  301 (966)
                      ++++|++|+++.....   +..+..+..+++|+.|+++++. .+.+|..+..+++|++|++++|.+++... ..+..+++
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~  319 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN  319 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence            5555555555432211   1222334444555555554432 22344444455555555555555443222 22344555


Q ss_pred             CceecccCCCCC-CCCCCCCCCCCCccEEEcc-----------CCcCcccC-CccccCCCCCcEEEccCCcccccCCCCc
Q 002105          302 LEILHLFSNNFT-GKIPSSLASMPKLQVLQLW-----------SNQFSGEI-PSNLGKQNNLTVIDLSTNFLTGKIPETL  368 (966)
Q Consensus       302 L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~L~-----------~N~l~~~~-p~~~~~~~~L~~L~Ls~N~l~~~~p~~~  368 (966)
                      |+.|+++ +.+. +.++..+..+++|++|+++           .|.+++.. +.....+++|+.|+++.|.+++..+..+
T Consensus       320 L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l  398 (592)
T 3ogk_B          320 LEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI  398 (592)
T ss_dssp             CCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred             CCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence            5555554 2221 1112222334455555555           23333221 1112234555555555555544433333


Q ss_pred             cC-CCCccEEEcc----CCCCCCC-----CCCccccCccCceeecccc--ccCCcCChhhc-CCCcccEEcccCCCCCC-
Q 002105          369 CD-SGSLFKLILF----SNSLEGK-----IPNSLSTCKSLRRVRLQNN--RLSGELSSEFT-RLPLVYFLDISGNDLSG-  434 (966)
Q Consensus       369 ~~-~~~L~~L~l~----~N~l~~~-----~p~~~~~l~~L~~L~L~~N--~l~~~~~~~~~-~l~~L~~LdLs~N~l~~-  434 (966)
                      .. +++|+.|+++    .|.+++.     ++..+.++++|++|++++|  .+++.....+. .+++|++|++++|.+++ 
T Consensus       399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~  478 (592)
T 3ogk_B          399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE  478 (592)
T ss_dssp             HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH
T ss_pred             HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH
Confidence            32 4455555553    3444432     2222344555555555432  23333332222 25555555555555554 


Q ss_pred             ccCcchhccCCCcEecCCCCcCCccC-CC-CcCcccccccccccccccc
Q 002105          435 RIGEQKWEMTSLQMLNLAGNNFSGKL-PD-SFGSDQLENLDLSENRFSG  481 (966)
Q Consensus       435 ~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~-~~~~~~L~~L~Ls~N~l~~  481 (966)
                      .++..+..+++|++|+|++|.+++.. +. ...+++|++|++++|++++
T Consensus       479 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          479 GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            22333344555555555555554321 11 1134455555555555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=6.6e-28  Score=265.18  Aligned_cols=248  Identities=25%  Similarity=0.228  Sum_probs=121.8

Q ss_pred             cEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcc--cCCcCCCCCCCCCEEEccCC
Q 002105          113 RFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVG--EIPLSISNITSLQIFTLASN  190 (966)
Q Consensus       113 ~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~n  190 (966)
                      +.++++++.++. +|.+..++|++|+|++|.++...+..|..+++|++|+|++|.+..  ..|..+..+++|++|++++|
T Consensus        10 ~~l~c~~~~l~~-ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           10 TEIRCNSKGLTS-VPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             TEEECCSSCCSS-CCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             CEEEcCCCCccc-CCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence            456666666652 333334566667776666664444445666666666666666552  22344445555555555555


Q ss_pred             CCcccCCcccccCCcceEEEccCCCCCCCCC-cCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCC
Q 002105          191 QLIGSIPREIGQLRNLKWIYLGYNNLSGEIP-KEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIP  269 (966)
Q Consensus       191 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  269 (966)
                      .+.. +|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|..|.++++|++|++++|.+++.  
T Consensus        89 ~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--  165 (306)
T 2z66_A           89 GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--  165 (306)
T ss_dssp             SEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG--
T ss_pred             cccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc--
Confidence            5542 34445555555555555555543322 3344444444444444444444444444444444444444444330  


Q ss_pred             hhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCC
Q 002105          270 KSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNN  349 (966)
Q Consensus       270 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~  349 (966)
                                           ..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++
T Consensus       166 ---------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  224 (306)
T 2z66_A          166 ---------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS  224 (306)
T ss_dssp             ---------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred             ---------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence                                 23444444444444444444444444444444445555555555444443334444444


Q ss_pred             CcEEEccCCcccccCCCCccCCC-CccEEEccCCCCC
Q 002105          350 LTVIDLSTNFLTGKIPETLCDSG-SLFKLILFSNSLE  385 (966)
Q Consensus       350 L~~L~Ls~N~l~~~~p~~~~~~~-~L~~L~l~~N~l~  385 (966)
                      |+.|++++|.+++..|..+..++ +|+.|++++|.++
T Consensus       225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            55555555544444444443332 3444444444433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=5.4e-31  Score=317.68  Aligned_cols=375  Identities=14%  Similarity=0.093  Sum_probs=202.9

Q ss_pred             CCCCCCEEEccCCCCcccCCcccccC--CcceEEEccCCC-CCC-CCCcCccCCCCCCEEEeeccccccc----CCcCCC
Q 002105          178 NITSLQIFTLASNQLIGSIPREIGQL--RNLKWIYLGYNN-LSG-EIPKEIGDLTSLNHLDLVYNNLTGQ----IPPSFG  249 (966)
Q Consensus       178 ~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~N~-l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~  249 (966)
                      ++++|++|+|++|.+++..+..+...  ++|++|+|++|. ++. .++.....+++|++|+|++|.+++.    ++..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            45555555555555554444444442  236666665554 110 0111123556666666666665443    222334


Q ss_pred             CCCccceEeccccccCCC----CChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCC---CCCCCCCCC
Q 002105          250 NLSNLRYLFLYQNKLTGS----IPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFT---GKIPSSLAS  322 (966)
Q Consensus       250 ~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~---~~~p~~l~~  322 (966)
                      ++++|++|++++|.+++.    ++..+.++++|++|++++|.+.+ +|..+..+++|+.|+++.....   +..+..+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            556666666666666522    23334566677777777766664 4566666677777777643222   223345566


Q ss_pred             CCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCC-CCccCCCCccEEEccCCCCCCCCCCccccCccCcee
Q 002105          323 MPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIP-ETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRV  401 (966)
Q Consensus       323 l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p-~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L  401 (966)
                      +++|+.|+++++. .+.+|..+..+++|+.|+|++|.+++... ..+..+++|+.|+++++...+.++.....+++|++|
T Consensus       269 ~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          269 PRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred             cccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence            6777777776643 23455566666777777777776554322 223455666666666322222233333456667777


Q ss_pred             eccc-----------cccCCcC-ChhhcCCCcccEEcccCCCCCCccCcchhc-cCCCcEecCC----CCcCCccC----
Q 002105          402 RLQN-----------NRLSGEL-SSEFTRLPLVYFLDISGNDLSGRIGEQKWE-MTSLQMLNLA----GNNFSGKL----  460 (966)
Q Consensus       402 ~L~~-----------N~l~~~~-~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~-l~~L~~L~Ls----~N~l~~~~----  460 (966)
                      ++++           |.+++.. +..+..+++|++|+++.|.+++.....+.. +++|+.|+++    .|.+++..    
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence            7772           4554332 222344667777777777776655544444 6677777774    55555431    


Q ss_pred             -CC-CcCcccccccccccc--cccccCCCccc-CcCCCCEEEccCCccCC-CChhhccccccccccccCCceeccc-cCc
Q 002105          461 -PD-SFGSDQLENLDLSEN--RFSGTIPRSFG-RLSELMQLKISRNKLFG-DIPEELSSCKKLVSLDLSNNQLSGH-IPA  533 (966)
Q Consensus       461 -p~-~~~~~~L~~L~Ls~N--~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~  533 (966)
                       +. ..++++|+.|+++++  .+++..+..+. .+++|+.|+|++|++++ .++..+..+++|+.|+|++|.+++. ++.
T Consensus       428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  507 (592)
T 3ogk_B          428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA  507 (592)
T ss_dssp             HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred             HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence             11 123455666666532  24433333332 25666666666666654 2344445666666666666666544 233


Q ss_pred             cCCCCCCCcEEeCCCCcCccc
Q 002105          534 SLSEMPVLGQLDLSENQLSGK  554 (966)
Q Consensus       534 ~l~~l~~L~~LdLs~N~l~g~  554 (966)
                      .+..+++|+.|+|++|++++.
T Consensus       508 ~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          508 AVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHhcCccCeeECcCCcCCHH
Confidence            334556666666666666544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.7e-27  Score=261.81  Aligned_cols=277  Identities=22%  Similarity=0.230  Sum_probs=168.4

Q ss_pred             EEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCC--CCChhhhcCCCCCEEEccC
Q 002105          208 WIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTG--SIPKSILGLKSLVSFDLSD  285 (966)
Q Consensus       208 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~  285 (966)
                      .++.+++.++ .+|..+.  ++|++|++++|+++...+..|.++++|++|++++|+++.  ..+..+..+++|++|++++
T Consensus        11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            3444444444 3343332  355566666666553333345566666666666665542  1244555566666666666


Q ss_pred             CcCcccCchhhcCCCCCceecccCCCCCCCCC-CCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccc-c
Q 002105          286 NYLSGEIPEEVIQLQNLEILHLFSNNFTGKIP-SSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTG-K  363 (966)
Q Consensus       286 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~-~  363 (966)
                      |.++ .+|..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ .
T Consensus        88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            6665 345556666666666666666665443 456667777777777777766666666677777777777777765 4


Q ss_pred             CCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhcc
Q 002105          364 IPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEM  443 (966)
Q Consensus       364 ~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l  443 (966)
                      +|..+..+++|+.|++++|++++..|..+..+++|++|+|++|++++..+..|..+++|++||+++|++++..+..+..+
T Consensus       167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  246 (306)
T 2z66_A          167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  246 (306)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred             chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence            56666666667777777777666666667777777777777777777666667777777777777777777666666666


Q ss_pred             -CCCcEecCCCCcCCccCCC--Cc-CcccccccccccccccccCCCccc
Q 002105          444 -TSLQMLNLAGNNFSGKLPD--SF-GSDQLENLDLSENRFSGTIPRSFG  488 (966)
Q Consensus       444 -~~L~~L~Ls~N~l~~~~p~--~~-~~~~L~~L~Ls~N~l~~~~p~~~~  488 (966)
                       ++|++|+|++|.+++..+.  +. .+...+.+....+.+....|..+.
T Consensus       247 ~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~  295 (306)
T 2z66_A          247 PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ  295 (306)
T ss_dssp             CTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred             hccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence             3677777777776653221  00 112333444444555544444433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=1.5e-27  Score=284.45  Aligned_cols=289  Identities=25%  Similarity=0.366  Sum_probs=164.7

Q ss_pred             CCCCCCCCCCCCcccceeeC--C-----CCCEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCC
Q 002105           39 FLSNWDSSVTFCKWNGISCQ--N-----STHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNS  111 (966)
Q Consensus        39 ~l~~w~~~~~~c~w~gv~c~--~-----~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~  111 (966)
                      ..+.|....+||.|+|..|.  .     ...++.|++++++++ .+|..+.  ++|++|+|++|.|+ .||.    .+++
T Consensus        11 ~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~   82 (622)
T 3g06_A           11 VWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPE   82 (622)
T ss_dssp             HHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTT
T ss_pred             HHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCC
Confidence            45678766789999775321  1     124677888888887 5566554  67888888888887 5665    3477


Q ss_pred             CcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCC
Q 002105          112 LRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQ  191 (966)
Q Consensus       112 L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~  191 (966)
                      |++|+|++|+|++ +|. .+++|++|+|++|.+++ +|.   .+++|++|++++|.+++ +|..   +++|++|++++|+
T Consensus        83 L~~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~  152 (622)
T 3g06_A           83 LRTLEVSGNQLTS-LPV-LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQ  152 (622)
T ss_dssp             CCEEEECSCCCSC-CCC-CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSC
T ss_pred             CCEEEcCCCcCCc-CCC-CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCc
Confidence            7777777777764 333 66777777777777764 333   45667777777777664 3432   3666666666666


Q ss_pred             CcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChh
Q 002105          192 LIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKS  271 (966)
Q Consensus       192 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  271 (966)
                      +++ +|.   .+++|+.|++++|.+++ +|   ..+++|+.|++++|.+++ +|..   +++|+.|++++|.++. +|..
T Consensus       153 l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~~  219 (622)
T 3g06_A          153 LAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL  219 (622)
T ss_dssp             CSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCC
T ss_pred             CCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCCC
Confidence            654 332   23455566666666653 33   334555666666665553 3322   2445555555555542 2221


Q ss_pred             hhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCc
Q 002105          272 ILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLT  351 (966)
Q Consensus       272 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~  351 (966)
                         +++|++|++++|.++                        + +|   ..+++|+.|++++|.++ .+|.   .+++|+
T Consensus       220 ---~~~L~~L~Ls~N~L~------------------------~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~  264 (622)
T 3g06_A          220 ---PSGLKELIVSGNRLT------------------------S-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLL  264 (622)
T ss_dssp             ---CTTCCEEECCSSCCS------------------------C-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCC
T ss_pred             ---CCCCCEEEccCCccC------------------------c-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCc
Confidence               244555555555444                        3 22   22344555555555554 2333   334555


Q ss_pred             EEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCcccc
Q 002105          352 VIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLST  394 (966)
Q Consensus       352 ~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~  394 (966)
                      .|+|++|.|+ .+|..+..+++|+.|++++|.+++..|..+..
T Consensus       265 ~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          265 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  306 (622)
T ss_dssp             EEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred             EEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence            5555555555 44555555555555555555555555544443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.2e-26  Score=269.84  Aligned_cols=228  Identities=21%  Similarity=0.204  Sum_probs=152.7

Q ss_pred             CCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEc
Q 002105          132 SRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYL  211 (966)
Q Consensus       132 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  211 (966)
                      ++|++|+|++|++++..|+.|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            45555666666665555566666666666666666666555556666666666666666666555555666666666666


Q ss_pred             cCCCCCCCCCcCccCCCCCCEEEeecc-cccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcc
Q 002105          212 GYNNLSGEIPKEIGDLTSLNHLDLVYN-NLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSG  290 (966)
Q Consensus       212 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  290 (966)
                      ++|.++...+..|.++++|++|++++| .+....+..|.++++|++|+|++|++++. | .+..+++|++|+|++|.+++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence            666666544455666666666666663 33333334566677777777777777643 3 36667777777777777777


Q ss_pred             cCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCccc
Q 002105          291 EIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLT  361 (966)
Q Consensus       291 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~  361 (966)
                      ..|..|..+++|+.|++++|++++..+..|.++++|+.|+|++|++++..+..+..+++|+.|+|++|.+.
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            77777777777777777777777777777777788888888888877666667777788888888888766

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2e-26  Score=267.79  Aligned_cols=244  Identities=23%  Similarity=0.234  Sum_probs=140.2

Q ss_pred             CEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCC--CCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccC
Q 002105           88 ESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPV--PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGG  165 (966)
Q Consensus        88 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  165 (966)
                      +.++.+++.++ .+|..+.   ++|++|+|++|++++..  .+..+++|++|+|++|.+++..|..|..+++|++|+|++
T Consensus        57 ~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             CEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             cEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            45555555555 4554332   45666666666665432  245566666666666666655555666666666666666


Q ss_pred             CCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCC-cCccCCCCCCEEEeecccccccC
Q 002105          166 NVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIP-KEIGDLTSLNHLDLVYNNLTGQI  244 (966)
Q Consensus       166 N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~  244 (966)
                      |.+++..+..|.++++|++|+|++|+++...+..|.++++|++|++++|+..+.++ ..|.++++|++|++++|++++ +
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence            66655545555566666666666666655555555666666666666533222332 345566666666666666653 2


Q ss_pred             CcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCC
Q 002105          245 PPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMP  324 (966)
Q Consensus       245 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  324 (966)
                      | .+..+++|++|+|++|++++..|..|.++++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..+..++
T Consensus       212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR  290 (452)
T ss_dssp             C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred             c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence            2 355556666666666666655555666666666666666666655555566666666666666666655555555566


Q ss_pred             CccEEEccCCcCc
Q 002105          325 KLQVLQLWSNQFS  337 (966)
Q Consensus       325 ~L~~L~L~~N~l~  337 (966)
                      +|+.|+|++|.+.
T Consensus       291 ~L~~L~L~~Np~~  303 (452)
T 3zyi_A          291 YLVELHLHHNPWN  303 (452)
T ss_dssp             TCCEEECCSSCEE
T ss_pred             CCCEEEccCCCcC
Confidence            6666666666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.4e-27  Score=257.90  Aligned_cols=205  Identities=26%  Similarity=0.280  Sum_probs=98.2

Q ss_pred             CCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCC-CcccCCcccccCCcceEEEc
Q 002105          133 RLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQ-LIGSIPREIGQLRNLKWIYL  211 (966)
Q Consensus       133 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L  211 (966)
                      +|++|+|++|.+++..+..|..+++|++|+|++|.+.+..|..|.++++|++|++++|. +....|..+..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            34444444444444334444444444444444444444444444444444444444444 33333444444455555555


Q ss_pred             cCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCccc
Q 002105          212 GYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGE  291 (966)
Q Consensus       212 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  291 (966)
                      ++|.+++..|..+.++++|++|++++|++++..+..|+++++|++|++++|++++..+..+..+++|++|++++|.+++.
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence            55554444444444555555555555555443334444455555555555554443333444455555555555555444


Q ss_pred             CchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCc
Q 002105          292 IPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS  337 (966)
Q Consensus       292 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  337 (966)
                      .|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            4444444455555555555554433334444555555555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.9e-28  Score=270.16  Aligned_cols=248  Identities=20%  Similarity=0.201  Sum_probs=142.1

Q ss_pred             cCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcC-------C
Q 002105           82 FHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIG-------S  154 (966)
Q Consensus        82 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-------~  154 (966)
                      +..++|+.|++++|.+  .+|..+...   |++|+|++|.++.                     +.+|..+.       +
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~---------------------~~~~~~~~~~~~~~~~   93 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRA---------------------ARIPSRILFGALRVLG   93 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEE---------------------EECBHHHHHHHHHHHT
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccC---------------------CCcCHHHHHHHHHhcC
Confidence            4455678888888888  677766543   5555666555531                     22333333       4


Q ss_pred             CCCcCEEEccCCCCcccCCcCC--CCCCCCCEEEccCCCCcccCCcccccC-----CcceEEEccCCCCCCCCCcCccCC
Q 002105          155 FSGLKVLDLGGNVLVGEIPLSI--SNITSLQIFTLASNQLIGSIPREIGQL-----RNLKWIYLGYNNLSGEIPKEIGDL  227 (966)
Q Consensus       155 l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~L~~N~l~~~~p~~l~~l  227 (966)
                      +++|++|+|++|.+++.+|..+  ..+++|++|++++|++++. |..++.+     ++|++|+|++|.+++..|..|+++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            5566666666666665555554  5666666666666666654 5555555     666666666666666555666666


Q ss_pred             CCCCEEEeeccccccc--CCcCC--CCCCccceEeccccccCCC--CC-hhhhcCCCCCEEEccCCcCcccCc-hhhcCC
Q 002105          228 TSLNHLDLVYNNLTGQ--IPPSF--GNLSNLRYLFLYQNKLTGS--IP-KSILGLKSLVSFDLSDNYLSGEIP-EEVIQL  299 (966)
Q Consensus       228 ~~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~L~~n~l~~~--~p-~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l  299 (966)
                      ++|++|++++|++.+.  .|..+  +++++|++|++++|++++.  ++ ..+.++++|++|++++|.+++..| ..+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            6666666666665543  22222  5666666666666666521  11 223455666666666666665443 233445


Q ss_pred             CCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCccc
Q 002105          300 QNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLT  361 (966)
Q Consensus       300 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~  361 (966)
                      ++|+.|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|+.|++++|.++
T Consensus       253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            55666666666555 4444443  5555555555555543 33 555555555555555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=4.9e-26  Score=263.58  Aligned_cols=247  Identities=24%  Similarity=0.244  Sum_probs=130.9

Q ss_pred             CCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCC
Q 002105           87 VESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGN  166 (966)
Q Consensus        87 L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  166 (966)
                      .+.++.+++.+. .+|..+.   +++++|+|++|++                      ++..+..|.++++|++|+|++|
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i----------------------~~~~~~~~~~l~~L~~L~Ls~n   98 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQI----------------------QIIKVNSFKHLRHLEILQLSRN   98 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCC----------------------CEECTTTTSSCSSCCEEECCSS
T ss_pred             CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcC----------------------CeeCHHHhhCCCCCCEEECCCC
Confidence            456777777776 6776443   3444555554444                      4444444555555555555555


Q ss_pred             CCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecc-cccccCC
Q 002105          167 VLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYN-NLTGQIP  245 (966)
Q Consensus       167 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p  245 (966)
                      .+.+..+..|.++++|++|+|++|+++...+..|..+++|++|+|++|.++...+..|.++++|++|++++| .+....+
T Consensus        99 ~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~  178 (440)
T 3zyj_A           99 HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE  178 (440)
T ss_dssp             CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence            554444444555555555555555554444444555555555555555554444444555555555555553 2332223


Q ss_pred             cCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCC
Q 002105          246 PSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPK  325 (966)
Q Consensus       246 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  325 (966)
                      ..|.++++|++|+|++|+++. +| .+..+++|++|+|++|.+++..|..|..+++|+.|++++|++++..+..|.++++
T Consensus       179 ~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  256 (440)
T 3zyj_A          179 GAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS  256 (440)
T ss_dssp             TTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred             chhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence            345555555566665555552 23 2455555556666655555555555555555555555555555555555555555


Q ss_pred             ccEEEccCCcCcccCCccccCCCCCcEEEccCCccc
Q 002105          326 LQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLT  361 (966)
Q Consensus       326 L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~  361 (966)
                      |+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus       257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            666666555555544445555555555555555544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=6.5e-27  Score=254.40  Aligned_cols=224  Identities=24%  Similarity=0.226  Sum_probs=140.2

Q ss_pred             eEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCC
Q 002105          207 KWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDN  286 (966)
Q Consensus       207 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  286 (966)
                      ++++.+++.++ .+|..+  .++|++|++++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            46777777776 455443  357777777777777666667777777777777777777666777777777777777777


Q ss_pred             c-CcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCC
Q 002105          287 Y-LSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIP  365 (966)
Q Consensus       287 ~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p  365 (966)
                      . ++...|..+..+++|+.|++++|.+++..|..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+++..+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            5 655556666677777777777777766666666667777777777777665555556666666666666666665444


Q ss_pred             CCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCC
Q 002105          366 ETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLS  433 (966)
Q Consensus       366 ~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~  433 (966)
                      ..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|++|++++|.+.
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            44555555555555555555444444555555555555555544444444444444444444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.4e-26  Score=266.15  Aligned_cols=230  Identities=22%  Similarity=0.248  Sum_probs=124.9

Q ss_pred             CccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeecc
Q 002105          325 KLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQ  404 (966)
Q Consensus       325 ~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~  404 (966)
                      +++.|+|++|++++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++++..+..|..+++|++|+|+
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            44445555555544444444445555555555555444444444444444444444444444444455555556666666


Q ss_pred             ccccCCcCChhhcCCCcccEEcccCCC-CCCccCcchhccCCCcEecCCCCcCCccCCCCcCcccccccccccccccccC
Q 002105          405 NNRLSGELSSEFTRLPLVYFLDISGND-LSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTI  483 (966)
Q Consensus       405 ~N~l~~~~~~~~~~l~~L~~LdLs~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~  483 (966)
                      +|++....+..|..+++|++|++++|. +....+..+..+++|++|+|++|+++. +|.                     
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~---------------------  202 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN---------------------  202 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CCC---------------------
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-ccc---------------------
Confidence            665555555555555666666665532 222223344455555555555555542 222                     


Q ss_pred             CCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCC
Q 002105          484 PRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVA  563 (966)
Q Consensus       484 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~  563 (966)
                         +..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|||++|++++..+..|..++
T Consensus       203 ---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  279 (440)
T 3zyj_A          203 ---LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH  279 (440)
T ss_dssp             ---CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred             ---cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence               44455555566666655555555566666666666666666666566666666666666666666655555566666


Q ss_pred             CCCeeeCcCCcccccC
Q 002105          564 SLVQVNISHNHFHGSL  579 (966)
Q Consensus       564 ~L~~l~ls~N~l~g~i  579 (966)
                      +|+.|++++|++.+..
T Consensus       280 ~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          280 HLERIHLHHNPWNCNC  295 (440)
T ss_dssp             TCCEEECCSSCEECSS
T ss_pred             CCCEEEcCCCCccCCC
Confidence            6666666666665543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=2.6e-28  Score=269.63  Aligned_cols=265  Identities=20%  Similarity=0.188  Sum_probs=144.1

Q ss_pred             eEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCc
Q 002105          256 YLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQ  335 (966)
Q Consensus       256 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~  335 (966)
                      .++++.+.+.......+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+  +..+++|++|++++|+
T Consensus        14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~   91 (317)
T 3o53_A           14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY   91 (317)
T ss_dssp             EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred             EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence            33444444432222333344455555555555555444555555555555555555544332  4445555555555554


Q ss_pred             CcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChh
Q 002105          336 FSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSE  415 (966)
Q Consensus       336 l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~  415 (966)
                      +++..     ..++|+.|++++|.++                        +..+..   +++|++|++++|++++..+..
T Consensus        92 l~~l~-----~~~~L~~L~l~~n~l~------------------------~~~~~~---~~~L~~L~l~~N~l~~~~~~~  139 (317)
T 3o53_A           92 VQELL-----VGPSIETLHAANNNIS------------------------RVSCSR---GQGKKNIYLANNKITMLRDLD  139 (317)
T ss_dssp             EEEEE-----ECTTCCEEECCSSCCS------------------------EEEECC---CSSCEEEECCSSCCCSGGGBC
T ss_pred             ccccc-----CCCCcCEEECCCCccC------------------------CcCccc---cCCCCEEECCCCCCCCccchh
Confidence            44221     1134444444444443                        222211   344555555555555555555


Q ss_pred             hcCCCcccEEcccCCCCCCccCcchh-ccCCCcEecCCCCcCCccCCCCcCcccccccccccccccccCCCcccCcCCCC
Q 002105          416 FTRLPLVYFLDISGNDLSGRIGEQKW-EMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELM  494 (966)
Q Consensus       416 ~~~l~~L~~LdLs~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  494 (966)
                      |..+++|++|++++|.+++..+..+. .+++|++|+|++|.+++                       . | ....+++|+
T Consensus       140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------~-~-~~~~l~~L~  194 (317)
T 3o53_A          140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-----------------------V-K-GQVVFAKLK  194 (317)
T ss_dssp             TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-----------------------E-E-CCCCCTTCC
T ss_pred             hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-----------------------c-c-cccccccCC
Confidence            55555555555555555554444332 34455555555554443                       2 1 112356667


Q ss_pred             EEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCCcCc-ccCCcccccCCCCCeeeCc-C
Q 002105          495 QLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLS-GKIPQTLGRVASLVQVNIS-H  572 (966)
Q Consensus       495 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~-g~~p~~l~~l~~L~~l~ls-~  572 (966)
                      .|+|++|++++. |..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..++.|+.++++ .
T Consensus       195 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          195 TLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             EEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             EEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            777777777643 334677777777777777777 45667777777888888888877 6677777777777777777 4


Q ss_pred             CcccccCCC
Q 002105          573 NHFHGSLPS  581 (966)
Q Consensus       573 N~l~g~ip~  581 (966)
                      +.+.|..|.
T Consensus       273 ~~l~~~~~~  281 (317)
T 3o53_A          273 KKLTGQNEE  281 (317)
T ss_dssp             HHHHSSSSC
T ss_pred             hhccCCchh
Confidence            456665553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=9.3e-28  Score=264.58  Aligned_cols=202  Identities=25%  Similarity=0.257  Sum_probs=96.9

Q ss_pred             CCCCCCEEEeecccccccCCcCC--CCCCccceEeccccccCCCCChhhhcC-----CCCCEEEccCCcCcccCchhhcC
Q 002105          226 DLTSLNHLDLVYNNLTGQIPPSF--GNLSNLRYLFLYQNKLTGSIPKSILGL-----KSLVSFDLSDNYLSGEIPEEVIQ  298 (966)
Q Consensus       226 ~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~~~~  298 (966)
                      ++++|++|++++|++++.+|..+  +.+++|++|+|++|++++. |..+..+     ++|++|++++|.+++..|..+..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            44555555555555555444443  4555555555555555544 4444444     45555555555554444444445


Q ss_pred             CCCCceecccCCCCCCC--CCCC--CCCCCCccEEEccCCcCcc--cCC-ccccCCCCCcEEEccCCcccccCC-CCccC
Q 002105          299 LQNLEILHLFSNNFTGK--IPSS--LASMPKLQVLQLWSNQFSG--EIP-SNLGKQNNLTVIDLSTNFLTGKIP-ETLCD  370 (966)
Q Consensus       299 l~~L~~L~L~~N~l~~~--~p~~--l~~l~~L~~L~L~~N~l~~--~~p-~~~~~~~~L~~L~Ls~N~l~~~~p-~~~~~  370 (966)
                      +++|+.|++++|++.+.  .|..  +..+++|++|++++|++++  .++ ..+..+++|+.|+|++|.+++..| ..+..
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence            55555555555544332  1111  2455566666666666552  111 223445566666666666665443 22333


Q ss_pred             CCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCC
Q 002105          371 SGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLS  433 (966)
Q Consensus       371 ~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~  433 (966)
                      +++|+.|++++|+++ .+|..+.  ++|++|+|++|++++. |. +..+++|++|++++|+++
T Consensus       252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            444444444444444 3343333  4445555555554444 22 444444444444444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.4e-27  Score=263.87  Aligned_cols=268  Identities=17%  Similarity=0.162  Sum_probs=189.5

Q ss_pred             CCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceeccc
Q 002105          229 SLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLF  308 (966)
Q Consensus       229 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  308 (966)
                      +++.++++.+.+...++..+..+++|++|+|++|++++..|..|..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            45566777777765555556778899999999999998888899999999999999999997665  8899999999999


Q ss_pred             CCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCC
Q 002105          309 SNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKI  388 (966)
Q Consensus       309 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~  388 (966)
                      +|.+++..     ..++|+.|++++|++++..+..   +++|+.|++++|.+++..+..+                    
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~--------------------  140 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDE--------------------  140 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCT--------------------
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhh--------------------
Confidence            99998533     3489999999999998765443   4567777777777765544444                    


Q ss_pred             CCccccCccCceeeccccccCCcCChhh-cCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCccCCCCcCcc
Q 002105          389 PNSLSTCKSLRRVRLQNNRLSGELSSEF-TRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSD  467 (966)
Q Consensus       389 p~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  467 (966)
                          ..+++|++|++++|++++..+..+ ..+++|++|++++|.+++..+.  ..+++|++|+|++|++++..+.+..++
T Consensus       141 ----~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~  214 (317)
T 3o53_A          141 ----GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQSAA  214 (317)
T ss_dssp             ----GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGGGGGGT
T ss_pred             ----hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCCcchhhhcccC
Confidence                445555555555555555544444 2456666666666666654221  235666666666666665544444556


Q ss_pred             cccccccccccccccCCCcccCcCCCCEEEccCCccC-CCChhhccccccccccccC-CceeccccCc
Q 002105          468 QLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLF-GDIPEELSSCKKLVSLDLS-NNQLSGHIPA  533 (966)
Q Consensus       468 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls-~N~l~~~~p~  533 (966)
                      +|+.|+|++|+++ .+|..+..+++|+.|++++|.+. +.+|..+..+++|+.|+++ .+.++|..|.
T Consensus       215 ~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             TCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             cccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            6666666666666 35666777777777777777777 6667777777777777777 4445555444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.8e-25  Score=266.71  Aligned_cols=267  Identities=27%  Similarity=0.350  Sum_probs=152.6

Q ss_pred             CCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceeccc
Q 002105          229 SLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLF  308 (966)
Q Consensus       229 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  308 (966)
                      +++.|++++|.++ .+|..+.  ++|++|++++|+++. +|.   .+++|++|+|++|.+++ +|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            5778888888877 5666554  677888888887773 444   45677777777777763 443   55667777777


Q ss_pred             CCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCC
Q 002105          309 SNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKI  388 (966)
Q Consensus       309 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~  388 (966)
                      +|.+++ +|.   .+++|+.|++++|++++ +|..   +++|+.|+|++|.+++ +|.   .                  
T Consensus       110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~------------------  159 (622)
T 3g06_A          110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---L------------------  159 (622)
T ss_dssp             SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---C------------------
T ss_pred             CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---c------------------
Confidence            776664 333   34566666666666654 3332   2556666666665553 222   1                  


Q ss_pred             CCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCccCCCCcCccc
Q 002105          389 PNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQ  468 (966)
Q Consensus       389 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  468 (966)
                            +.+|+.|++++|++++. |   ..+++|+.|++++|++++. |.   .+++|+.|++++|.++. +|..  .++
T Consensus       160 ------~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~~~--~~~  222 (622)
T 3g06_A          160 ------PSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPAL--PSG  222 (622)
T ss_dssp             ------CTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS-CCCC--CTT
T ss_pred             ------cCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccc-cCCC--CCC
Confidence                  23344444444444432 1   2234455555555555432 11   12455555555555553 2221  245


Q ss_pred             ccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCC
Q 002105          469 LENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSE  548 (966)
Q Consensus       469 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~  548 (966)
                      |+.|+|++|.+++ +|   ..+++|+.|+|++|+++ .+|.   .+++|+.|+|++|+|+ .+|..+..+++|+.|+|++
T Consensus       223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG  293 (622)
T ss_dssp             CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred             CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence            5666666666654 33   33456666666666665 3443   4556666666666666 5566666666666666666


Q ss_pred             CcCcccCCcccccC
Q 002105          549 NQLSGKIPQTLGRV  562 (966)
Q Consensus       549 N~l~g~~p~~l~~l  562 (966)
                      |++++.+|..+..+
T Consensus       294 N~l~~~~~~~l~~L  307 (622)
T 3g06_A          294 NPLSERTLQALREI  307 (622)
T ss_dssp             CCCCHHHHHHHHHH
T ss_pred             CCCCCcCHHHHHhc
Confidence            66666666655544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=2.8e-25  Score=239.41  Aligned_cols=215  Identities=28%  Similarity=0.384  Sum_probs=119.4

Q ss_pred             CCCCcccceeeCCCCCEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCC
Q 002105           47 VTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPV  126 (966)
Q Consensus        47 ~~~c~w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~  126 (966)
                      .++|.|.|+.|.-...++.+++++++++. +|..+.  +.|++|+|++|++. .+|...|..+++|++|+|++|.+++..
T Consensus         2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEEETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEeCCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            38999999999654455677777777774 444443  46777777777776 455555555566666666666555322


Q ss_pred             C--CCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCC
Q 002105          127 P--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLR  204 (966)
Q Consensus       127 ~--~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  204 (966)
                      +  +..+++|++|+|++|.+++..+..|..+++|++|+|++|.+.+..|..|.+++                        
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------------------------  133 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT------------------------  133 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT------------------------
T ss_pred             hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc------------------------
Confidence            2  24455555555555555544444445555555555555555444444444444                        


Q ss_pred             cceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEcc
Q 002105          205 NLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLS  284 (966)
Q Consensus       205 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  284 (966)
                      +|++|+|++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|+.|+++
T Consensus       134 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  213 (270)
T 2o6q_A          134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ  213 (270)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence            44555555554443333344555555555555555554444445555555555555555554444445555555555555


Q ss_pred             CCcCc
Q 002105          285 DNYLS  289 (966)
Q Consensus       285 ~N~l~  289 (966)
                      +|.+.
T Consensus       214 ~N~~~  218 (270)
T 2o6q_A          214 ENPWD  218 (270)
T ss_dssp             SSCBC
T ss_pred             CCCee
Confidence            55543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=9.3e-27  Score=272.27  Aligned_cols=234  Identities=23%  Similarity=0.221  Sum_probs=129.1

Q ss_pred             CCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEcc
Q 002105          301 NLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILF  380 (966)
Q Consensus       301 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~  380 (966)
                      +|+.|+|++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|+.|+|++|.+++..+     .++|+.|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence            44444444444444444444445555555555555444333  4444555555555555443211     1334444444


Q ss_pred             CCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchh-ccCCCcEecCCCCcCCcc
Q 002105          381 SNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKW-EMTSLQMLNLAGNNFSGK  459 (966)
Q Consensus       381 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~  459 (966)
                      +|.+++..+.   .+++|+.|+|++|++++..|..|..+++|++|+|++|.+++.+|..+. .+++|+.|+|++|.+++ 
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-  183 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-  183 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-
Confidence            4444433322   124455555555555555555555555555555555555555444443 34555555555554443 


Q ss_pred             CCCCcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCC
Q 002105          460 LPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMP  539 (966)
Q Consensus       460 ~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  539 (966)
                                            ..+  +..+++|+.|+|++|++++..| .+..+++|+.|+|++|.|++ +|..++.++
T Consensus       184 ----------------------~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~  237 (487)
T 3oja_A          184 ----------------------VKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQ  237 (487)
T ss_dssp             ----------------------EEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCT
T ss_pred             ----------------------ccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCC
Confidence                                  311  2235666677777777765433 36677777777777777774 566677777


Q ss_pred             CCcEEeCCCCcCc-ccCCcccccCCCCCeeeCc
Q 002105          540 VLGQLDLSENQLS-GKIPQTLGRVASLVQVNIS  571 (966)
Q Consensus       540 ~L~~LdLs~N~l~-g~~p~~l~~l~~L~~l~ls  571 (966)
                      +|+.|++++|++. +.+|..+..++.|+.++++
T Consensus       238 ~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            7888888888777 6666777777777777775

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.6e-26  Score=270.39  Aligned_cols=239  Identities=22%  Similarity=0.223  Sum_probs=143.9

Q ss_pred             ccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCE
Q 002105           81 IFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKV  160 (966)
Q Consensus        81 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  160 (966)
                      ....++|++|+|++|.+++ +++..|..+++|++|+|++|.+++..|++.+++|++|+|++|.+++..+     .++|++
T Consensus        30 ~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~  103 (487)
T 3oja_A           30 RQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----GPSIET  103 (487)
T ss_dssp             STTGGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred             cccCCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence            3344578888888888874 5555666778888888888888776667777788888888887764322     267777


Q ss_pred             EEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCcc-CCCCCCEEEeeccc
Q 002105          161 LDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIG-DLTSLNHLDLVYNN  239 (966)
Q Consensus       161 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~  239 (966)
                      |++++|.+.+..+.   .+++|+.|++++|.+++..|..++.+++|++|+|++|.+++..|..+. .+++|++|+|++|.
T Consensus       104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            77777777655443   245566666666666666666666666666666666666655555554 55666666666666


Q ss_pred             ccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCC
Q 002105          240 LTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSS  319 (966)
Q Consensus       240 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  319 (966)
                      +++..+  +..+++|++|+|++|.+++. |..+..+++|+.|++++|.                        +++ +|..
T Consensus       181 l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~------------------------l~~-lp~~  232 (487)
T 3oja_A          181 IYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNK------------------------LVL-IEKA  232 (487)
T ss_dssp             CCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSC------------------------CCE-ECTT
T ss_pred             cccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCc------------------------Ccc-cchh
Confidence            554311  22355555555555555432 2224444445555555444                        443 3444


Q ss_pred             CCCCCCccEEEccCCcCc-ccCCccccCCCCCcEEEcc
Q 002105          320 LASMPKLQVLQLWSNQFS-GEIPSNLGKQNNLTVIDLS  356 (966)
Q Consensus       320 l~~l~~L~~L~L~~N~l~-~~~p~~~~~~~~L~~L~Ls  356 (966)
                      +..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       233 l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            555555555555555554 4444555555555555553

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.92  E-value=6.8e-27  Score=277.18  Aligned_cols=179  Identities=17%  Similarity=0.089  Sum_probs=124.1

Q ss_pred             CCCCccEEEEEEEecCCcEEEEEEEeccCc----------ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNT----------ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       692 g~~g~~~vy~~~~~~~~~~vavk~~~~~~~----------~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      +.|+.|.+++++....|..+|+|.+.....          ...++|.+|++.+.++-.|+||+++++++++++..|||||
T Consensus       243 ~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVME  322 (569)
T 4azs_A          243 YAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVME  322 (569)
T ss_dssp             C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEEE
T ss_pred             ccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEEe
Confidence            445555577777777899999999864321          1234588999999986689999999999999999999999


Q ss_pred             ccCCCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC------
Q 002105          762 YIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS------  835 (966)
Q Consensus       762 y~~~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~------  835 (966)
                      ||+||+|.++|+........+|+.||+.||+|+|   +.+||||||||+|||+++++  .+|+.|||++.....      
T Consensus       323 yv~G~~L~d~i~~~~~l~~~~I~~QIl~AL~ylH---~~GIIHRDIKPeNILL~~dg--~vKL~DFGlAr~~~~~~~~~~  397 (569)
T 4azs_A          323 KLPGRLLSDMLAAGEEIDREKILGSLLRSLAALE---KQGFWHDDVRPWNVMVDARQ--HARLIDFGSIVTTPQDCSWPT  397 (569)
T ss_dssp             CCCSEEHHHHHHTTCCCCHHHHHHHHHHHHHHHH---HTTCEESCCCGGGEEECTTS--CEEECCCTTEESCC---CCSH
T ss_pred             cCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHH---HCCceeccCchHhEEECCCC--CEEEeecccCeeCCCCCcccc
Confidence            9999999999975221122368999999999999   55999999999999999764  589999999865322      


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCC
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP  876 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p  876 (966)
                      ..+||++|||||++.+ .+..++|+||+|++++++.+|..|
T Consensus       398 t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~  437 (569)
T 4azs_A          398 NLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN  437 (569)
T ss_dssp             HHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred             CceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence            2368999999999876 467789999999998887665443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=9.3e-24  Score=228.30  Aligned_cols=205  Identities=25%  Similarity=0.226  Sum_probs=119.1

Q ss_pred             CCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEcc
Q 002105          133 RLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLG  212 (966)
Q Consensus       133 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  212 (966)
                      +|++|+|++|.+++..+..|.++++|++|+|++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45555555555555444555566666666666666555555555666666666666666655555556666666666666


Q ss_pred             CCCCCCCCCcCccCCCCCCEEEeeccccccc-CCcCCCCCCccceEeccccccCCCCChhhhcCCCCC----EEEccCCc
Q 002105          213 YNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQ-IPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLV----SFDLSDNY  287 (966)
Q Consensus       213 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~Ls~N~  287 (966)
                      +|.+++..+..++.+++|++|++++|.+++. +|..|+++++|++|++++|++++..+..+..+++|+    .|++++|.
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence            6666554444566666666666666666542 455666666666666666666655555555555554    56666666


Q ss_pred             CcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcc
Q 002105          288 LSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSG  338 (966)
Q Consensus       288 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  338 (966)
                      +++..+..+ ...+|+.|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus       189 l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          189 MNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             ccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            664433332 23356666666666665444455556666666666666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.9e-23  Score=225.95  Aligned_cols=223  Identities=23%  Similarity=0.195  Sum_probs=178.7

Q ss_pred             EEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCC
Q 002105          136 ILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNN  215 (966)
Q Consensus       136 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~  215 (966)
                      +.+.++..+. .+|..+.  ++|++|+|++|.+.+..+..|.++++|++|++++|++++..+..+..+++|++|+|++|.
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            4555666665 4666554  579999999999998877789999999999999999998888889999999999999999


Q ss_pred             CCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCC-CChhhhcCCCCCEEEccCCcCcccCch
Q 002105          216 LSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGS-IPKSILGLKSLVSFDLSDNYLSGEIPE  294 (966)
Q Consensus       216 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~  294 (966)
                      +++..+..|.++++|++|++++|++.+..+..++++++|++|++++|++++. +|..+.++++|++|++++|.+++..+.
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence            9988888899999999999999999987777899999999999999999864 588899999999999999999887777


Q ss_pred             hhcCCCCCc----eecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccc
Q 002105          295 EVIQLQNLE----ILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTG  362 (966)
Q Consensus       295 ~~~~l~~L~----~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~  362 (966)
                      .+..+.+|+    .|++++|.+++..+..+. ..+|+.|++++|++++..+..+..+++|+.|++++|.+++
T Consensus       168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             GGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             HhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            777666666    677777777755444443 3467777777777765555555666667777776666654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=6.1e-28  Score=291.06  Aligned_cols=157  Identities=17%  Similarity=0.107  Sum_probs=94.1

Q ss_pred             CccCceeeccccccCCcCChhhc-CCCcccEEccc--C----CCCCCc-----cCcchhccCCCcEecCCCCcCCccCCC
Q 002105          395 CKSLRRVRLQNNRLSGELSSEFT-RLPLVYFLDIS--G----NDLSGR-----IGEQKWEMTSLQMLNLAGNNFSGKLPD  462 (966)
Q Consensus       395 l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~LdLs--~----N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~p~  462 (966)
                      +++|+.|.+..|.+++.....+. .+++|+.|+++  +    |.+++.     ++..+..+++|+.|+|++ .+++..+.
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~  449 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE  449 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence            55566666666666544444333 35666666666  3    344421     112244566777777765 44433222


Q ss_pred             -Cc-CcccccccccccccccccCCCcc-cCcCCCCEEEccCCccCCCChh-hccccccccccccCCceeccccCccC-CC
Q 002105          463 -SF-GSDQLENLDLSENRFSGTIPRSF-GRLSELMQLKISRNKLFGDIPE-ELSSCKKLVSLDLSNNQLSGHIPASL-SE  537 (966)
Q Consensus       463 -~~-~~~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~  537 (966)
                       +. .+++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+. ....+++|+.|++++|+++......+ ..
T Consensus       450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~  529 (594)
T 2p1m_B          450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQK  529 (594)
T ss_dssp             HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHH
T ss_pred             HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHh
Confidence             11 24667778888777765544444 5678888888888888554443 34558888888888888865433334 45


Q ss_pred             CCCCcEEeCCCCcCc
Q 002105          538 MPVLGQLDLSENQLS  552 (966)
Q Consensus       538 l~~L~~LdLs~N~l~  552 (966)
                      ++.|+...+..+.-.
T Consensus       530 lp~l~i~~~~~~~~~  544 (594)
T 2p1m_B          530 MPKLNVEVIDERGAP  544 (594)
T ss_dssp             CTTEEEEEECSSSCG
T ss_pred             CCCCEEEEecCCCcc
Confidence            677777777666543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=8.3e-24  Score=228.07  Aligned_cols=205  Identities=27%  Similarity=0.298  Sum_probs=106.9

Q ss_pred             CCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccC
Q 002105          110 NSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLAS  189 (966)
Q Consensus       110 ~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  189 (966)
                      ++|+.|++++|.++....+..+++|++|+|++|.+++.  +.+..+++|++|+|++|.+++..+..|.++++|++|++++
T Consensus        41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  118 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE  118 (272)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence            45555555555554433344455555555555555531  2455555555555555555544444455555555555555


Q ss_pred             CCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCC
Q 002105          190 NQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIP  269 (966)
Q Consensus       190 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  269 (966)
                      |++++..+..++.+++|++|++++|.+++..+..++.+++|++|++++|++++..+..|+++++|++|++++|++++..+
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            55554444445555555555555555554444445555555555555555554444445555555555555555555444


Q ss_pred             hhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCC
Q 002105          270 KSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASM  323 (966)
Q Consensus       270 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  323 (966)
                      ..+..+++|+.|++++|.+.+.       +++|+.|+++.|.++|.+|.+++.+
T Consensus       199 ~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          199 GVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             HHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence            4455555555555555544432       2234455555555555555444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=8.5e-24  Score=228.01  Aligned_cols=211  Identities=23%  Similarity=0.245  Sum_probs=183.9

Q ss_pred             ccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCE
Q 002105           81 IFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKV  160 (966)
Q Consensus        81 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  160 (966)
                      +..+++|+.|++++|.+. .++.  +..+++|++|+|++|.+++...++.+++|++|+|++|.+++..+..+..+++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             cccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            456788999999999887 4543  5567999999999999987656788999999999999999888888899999999


Q ss_pred             EEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccc
Q 002105          161 LDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNL  240 (966)
Q Consensus       161 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  240 (966)
                      |+|++|.+.+..|..|.++++|++|++++|++++..+..++.+++|++|++++|.+++..+..++.+++|++|++++|++
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            99999999988887889999999999999999987777789999999999999999987777789999999999999999


Q ss_pred             cccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCC
Q 002105          241 TGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQN  301 (966)
Q Consensus       241 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  301 (966)
                      ++..|..+.++++|++|++++|.+.+.       +++|+.|+++.|.++|.+|.+++.+..
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             CccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence            988888889999999999999988764       456888899999999999988876654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=2.5e-27  Score=285.70  Aligned_cols=417  Identities=16%  Similarity=0.173  Sum_probs=221.3

Q ss_pred             CCCCCcEEeCCCCCCCC---cCCCC------------cCCCCCcCEEEccCCCCcccCCcCCC-CCCCCCEEEccCC-CC
Q 002105          130 SLSRLEILDLSNNMLSG---KIPEE------------IGSFSGLKVLDLGGNVLVGEIPLSIS-NITSLQIFTLASN-QL  192 (966)
Q Consensus       130 ~l~~L~~L~Ls~N~l~~---~~p~~------------~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~n-~l  192 (966)
                      .+++|++|+|+++....   ..|..            ...+++|++|+|++|.+++..+..+. .+++|++|++++| .+
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            35789999999875321   12221            23466777777777776655554454 5677777777776 33


Q ss_pred             ccc-CCcccccCCcceEEEccCCCCCCCCCcCcc----CCCCCCEEEeeccc--cccc-CCcCCCCCCccceEecccc-c
Q 002105          193 IGS-IPREIGQLRNLKWIYLGYNNLSGEIPKEIG----DLTSLNHLDLVYNN--LTGQ-IPPSFGNLSNLRYLFLYQN-K  263 (966)
Q Consensus       193 ~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~----~l~~L~~L~Ls~N~--l~~~-~p~~~~~l~~L~~L~L~~n-~  263 (966)
                      ... ++..+.++++|++|+|++|.+++..+..+.    .+++|++|++++|.  +... ++..+.++++|++|++++| .
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~  223 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP  223 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence            321 333334566777777777766554333332    44566666666654  1100 1111223456666666655 2


Q ss_pred             cCCCCChhhhcCCCCCEEEccCCc-------CcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcC
Q 002105          264 LTGSIPKSILGLKSLVSFDLSDNY-------LSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQF  336 (966)
Q Consensus       264 l~~~~p~~l~~l~~L~~L~Ls~N~-------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l  336 (966)
                      +.+ ++..+..+++|+.|+++.+.       +.+ ++..+.++++|+.|.                       .+.....
T Consensus       224 ~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls-----------------------~~~~~~~  278 (594)
T 2p1m_B          224 LEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLS-----------------------GFWDAVP  278 (594)
T ss_dssp             HHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEE-----------------------CCBTCCG
T ss_pred             HHH-HHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCccccc-----------------------CCcccch
Confidence            222 45555555666666543322       221 223444455555541                       1211111


Q ss_pred             cccCCccccCCCCCcEEEccCCcccccCC-CCccCCCCccEEEccCCCCCC-CCCCccccCccCceeecc---------c
Q 002105          337 SGEIPSNLGKQNNLTVIDLSTNFLTGKIP-ETLCDSGSLFKLILFSNSLEG-KIPNSLSTCKSLRRVRLQ---------N  405 (966)
Q Consensus       337 ~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p-~~~~~~~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~L~---------~  405 (966)
                       +.++..+..+++|+.|+|++|.+++... ..+..+++|+.|++++| +.. .++.....+++|++|++.         .
T Consensus       279 -~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~  356 (594)
T 2p1m_B          279 -AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPN  356 (594)
T ss_dssp             -GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCS
T ss_pred             -hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccC
Confidence             1222222333444444444444332111 11223344444444444 111 111122245667777663         3


Q ss_pred             cccCCcCChhhc-CCCcccEEcccCCCCCCccCcchh-ccCCCcEecCC--C----CcCCccCCC------CcCcccccc
Q 002105          406 NRLSGELSSEFT-RLPLVYFLDISGNDLSGRIGEQKW-EMTSLQMLNLA--G----NNFSGKLPD------SFGSDQLEN  471 (966)
Q Consensus       406 N~l~~~~~~~~~-~l~~L~~LdLs~N~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~~~p~------~~~~~~L~~  471 (966)
                      +.+++.....+. .+++|+.|+++.|.+++.....+. .+++|+.|+++  +    |.+++...+      +..+++|+.
T Consensus       357 ~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~  436 (594)
T 2p1m_B          357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR  436 (594)
T ss_dssp             SCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCE
T ss_pred             CCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccE
Confidence            445433333333 478888888888888765555554 47888888888  4    455532111      123467778


Q ss_pred             cccccccccccCCCcccC-cCCCCEEEccCCccCCCChhhc-cccccccccccCCceeccccCc-cCCCCCCCcEEeCCC
Q 002105          472 LDLSENRFSGTIPRSFGR-LSELMQLKISRNKLFGDIPEEL-SSCKKLVSLDLSNNQLSGHIPA-SLSEMPVLGQLDLSE  548 (966)
Q Consensus       472 L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~LdLs~  548 (966)
                      |++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+. ....+++|+.|++++
T Consensus       437 L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~  515 (594)
T 2p1m_B          437 LSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS  515 (594)
T ss_dssp             EECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEES
T ss_pred             EeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeC
Confidence            88866 555544444444 6778888888887766555444 5677788888888877654433 334567788888888


Q ss_pred             CcCcccCCccc-ccCCCCCeeeCcCCc
Q 002105          549 NQLSGKIPQTL-GRVASLVQVNISHNH  574 (966)
Q Consensus       549 N~l~g~~p~~l-~~l~~L~~l~ls~N~  574 (966)
                      |+++..-...+ ..++.|....+..+.
T Consensus       516 ~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          516 CSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             SCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            87754333333 345555544444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=2.2e-22  Score=216.68  Aligned_cols=202  Identities=25%  Similarity=0.275  Sum_probs=106.1

Q ss_pred             CcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCC
Q 002105          112 LRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQ  191 (966)
Q Consensus       112 L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~  191 (966)
                      .++++++++.++. +|..-..+|++|+|++|++++..+..|..+++|++|+|++|.++...+..|.++++|++|++++|+
T Consensus        18 ~~~l~~~~~~l~~-ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~   96 (270)
T 2o6q_A           18 KNSVDCSSKKLTA-IPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK   96 (270)
T ss_dssp             TTEEECTTSCCSS-CCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCEEEccCCCCCc-cCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence            3444444444442 222222455666666666655555556666666666666666654444444555555555555555


Q ss_pred             CcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChh
Q 002105          192 LIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKS  271 (966)
Q Consensus       192 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  271 (966)
                      +.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|                 
T Consensus        97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-----------------  159 (270)
T 2o6q_A           97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL-----------------  159 (270)
T ss_dssp             CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------------
T ss_pred             CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc-----------------
Confidence            554444444555555555555555554444445555555555555555544333334444444                 


Q ss_pred             hhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcc
Q 002105          272 ILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSG  338 (966)
Q Consensus       272 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  338 (966)
                             ++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+..
T Consensus       160 -------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          160 -------KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             -------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             -------ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence                   445555444444444444455555555555555554444455566666666666666543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=5.1e-22  Score=215.87  Aligned_cols=113  Identities=26%  Similarity=0.282  Sum_probs=47.0

Q ss_pred             ccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCc
Q 002105          224 IGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLE  303 (966)
Q Consensus       224 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  303 (966)
                      +..+++|++|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+
T Consensus        96 ~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~  175 (290)
T 1p9a_G           96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD  175 (290)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred             hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence            33333333333333333333333334444444444444444333333333444444444444444433333333444444


Q ss_pred             eecccCCCCCCCCCCCCCCCCCccEEEccCCcCc
Q 002105          304 ILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS  337 (966)
Q Consensus       304 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  337 (966)
                      .|++++|+++ .+|..+..+++|+.|+|++|.+.
T Consensus       176 ~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             EEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            4444444444 33444444445555555555443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=3.5e-22  Score=212.61  Aligned_cols=188  Identities=23%  Similarity=0.292  Sum_probs=99.7

Q ss_pred             CCCcccceeeCCCCCEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCC
Q 002105           48 TFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP  127 (966)
Q Consensus        48 ~~c~w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~  127 (966)
                      +||.|.|++|...                          .++++++++.++ .+|..+.   +.|++|+|++|.+++..+
T Consensus         3 ~Cp~~~gC~C~~~--------------------------~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~   52 (251)
T 3m19_A            3 TCETVTGCTCNEG--------------------------KKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSD   52 (251)
T ss_dssp             -CHHHHSSEEEGG--------------------------GTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcCCC--------------------------CeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCH
Confidence            6889999999531                          233455555554 4554322   334444444444443221


Q ss_pred             --CCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCc
Q 002105          128 --IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRN  205 (966)
Q Consensus       128 --~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  205 (966)
                        +..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|.++++|++|++++|++++..+..+..+++
T Consensus        53 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  132 (251)
T 3m19_A           53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK  132 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc
Confidence              344555666666666665555555666666666666666666555555555555555555555555444444455555


Q ss_pred             ceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccC
Q 002105          206 LKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLT  265 (966)
Q Consensus       206 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~  265 (966)
                      |++|+|++|.+++..+..|+.+++|++|+|++|++++..+..|.++++|++|+|++|.+.
T Consensus       133 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            555555555555444444555555555555555555444444444555555555555444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=7.2e-22  Score=214.70  Aligned_cols=134  Identities=28%  Similarity=0.245  Sum_probs=74.6

Q ss_pred             CCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCcee
Q 002105          226 DLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEIL  305 (966)
Q Consensus       226 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  305 (966)
                      .+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|
T Consensus        75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  153 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (290)
T ss_dssp             CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence            4445555555555554 345555555556666666666555545555555566666666665555444445555556666


Q ss_pred             cccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCccc
Q 002105          306 HLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLT  361 (966)
Q Consensus       306 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~  361 (966)
                      +|++|++++..+..|..+++|+.|+|++|+++ .+|..+....+|+.++|++|.+.
T Consensus       154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            66666555444444555556666666666555 44555555555566666655554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.3e-24  Score=242.14  Aligned_cols=231  Identities=19%  Similarity=0.248  Sum_probs=129.4

Q ss_pred             CCCcccceeeCCCCCEEEEEcCCCCccccccccccCC--CCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCC
Q 002105           48 TFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHL--PHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGP  125 (966)
Q Consensus        48 ~~c~w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~~l--~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~  125 (966)
                      -|.+|+++.|+. ..++.+|++++.+.   +..+..+  ++++.|++++|.+.+.++. ++ .+++|++|+|++|.+++.
T Consensus        35 vc~~W~~~~~~~-~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~-~~~~L~~L~L~~~~l~~~  108 (336)
T 2ast_B           35 VCKRWYRLASDE-SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVS  108 (336)
T ss_dssp             SCHHHHHHHTCS-TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CC-CCBCCCEEECTTCEECHH
T ss_pred             HHHHHHHHhcCc-hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hc-cCCCCCEEEccCCCcCHH
Confidence            566899999863 34667777777665   3344445  6677777777777654433 33 346666666666666532


Q ss_pred             -CC--CCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCC-CCcc-cCCcCCCCCCCCCEEEccCC-CCccc-CCc
Q 002105          126 -VP--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGN-VLVG-EIPLSISNITSLQIFTLASN-QLIGS-IPR  198 (966)
Q Consensus       126 -~~--~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~-~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~  198 (966)
                       .+  +..+++|++|+|++|.+++..+..++.+++|++|+|++| .+++ .+|..+.++++|++|++++| .+++. ++.
T Consensus       109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  188 (336)
T 2ast_B          109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV  188 (336)
T ss_dssp             HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred             HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence             22  355566666666666665555555666666666666666 4443 24444555666666666666 55442 344


Q ss_pred             ccccCC-cceEEEccCC--CCC-CCCCcCccCCCCCCEEEeeccc-ccccCCcCCCCCCccceEeccccccCCCCCh---
Q 002105          199 EIGQLR-NLKWIYLGYN--NLS-GEIPKEIGDLTSLNHLDLVYNN-LTGQIPPSFGNLSNLRYLFLYQNKLTGSIPK---  270 (966)
Q Consensus       199 ~l~~l~-~L~~L~L~~N--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~---  270 (966)
                      .+..++ +|++|++++|  .++ +.+|..+..+++|++|++++|. +++..+..+.++++|++|++++|.  +..+.   
T Consensus       189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~  266 (336)
T 2ast_B          189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLL  266 (336)
T ss_dssp             HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGG
T ss_pred             HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHH
Confidence            455555 5666666655  333 2334444455555555555555 444444455555555555555553  11122   


Q ss_pred             hhhcCCCCCEEEccCC
Q 002105          271 SILGLKSLVSFDLSDN  286 (966)
Q Consensus       271 ~l~~l~~L~~L~Ls~N  286 (966)
                      .+.++++|+.|++++|
T Consensus       267 ~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          267 ELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGCTTCCEEECTTS
T ss_pred             HHhcCCCCCEEeccCc
Confidence            3445555555555555

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.88  E-value=1.5e-23  Score=247.27  Aligned_cols=174  Identities=16%  Similarity=0.125  Sum_probs=141.4

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCccc--------ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT--------TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~--------~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      .+|+|+||.||++.  ..+..+|+|+........        .+.+.+|+..+.+ ++|||||++..++..++..|+|||
T Consensus       343 ~LG~G~fg~Vy~~~--~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~-l~h~nIv~~~~~~~~~~~~~lVmE  419 (540)
T 3en9_A          343 LIGKGAEADIKRDS--YLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLAL-VKDFGIPAPYIFDVDLDNKRIMMS  419 (540)
T ss_dssp             -----CCEEEEEEE--CSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHH-GGGGTCCCCCEEEEETTTTEEEEE
T ss_pred             EEeeCCCEEEEEEE--ECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHh-cCCCCcCceEEEEEeCCccEEEEE
Confidence            46899999999994  578889999876532211        2336788888888 699999977666667778899999


Q ss_pred             ccCCCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC------
Q 002105          762 YIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS------  835 (966)
Q Consensus       762 y~~~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~------  835 (966)
                      ||+||+|.++++.     +..++.|+++||+|||   +.+|+||||||+|||++.    .+++.|||++.....      
T Consensus       420 ~~~ggsL~~~l~~-----~~~i~~qi~~aL~~LH---~~gIiHrDiKp~NILl~~----~~kL~DFGla~~~~~~~~~~~  487 (540)
T 3en9_A          420 YINGKLAKDVIED-----NLDIAYKIGEIVGKLH---KNDVIHNDLTTSNFIFDK----DLYIIDFGLGKISNLDEDKAV  487 (540)
T ss_dssp             CCCSEEHHHHSTT-----CTHHHHHHHHHHHHHH---HTTEECTTCCTTSEEESS----SEEECCCTTCEECCCHHHHHH
T ss_pred             CCCCCCHHHHHHH-----HHHHHHHHHHHHHHHH---HCcCccCCCCHHHEEECC----eEEEEECccCEECCCcccccc
Confidence            9999999999976     6789999999999999   458999999999999996    689999999876432      


Q ss_pred             -------CCcCCcccccccccCC--CCCCCcchHHHHHHHHHHHHcCCCCCC
Q 002105          836 -------KSINSSAYVAPETKES--KDITEKGDIYGFGLILIDLLTGKSPAD  878 (966)
Q Consensus       836 -------~~~~~~~y~aPE~~~~--~~~~~~~Dv~S~Gv~l~el~tg~~p~~  878 (966)
                             ...||+.|||||++..  ..|+.++|+||..+-.+|.+.++.+|.
T Consensus       488 ~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~  539 (540)
T 3en9_A          488 DLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV  539 (540)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred             chhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence                   3468999999999876  678889999999999999988887763

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=7.8e-24  Score=238.37  Aligned_cols=255  Identities=19%  Similarity=0.183  Sum_probs=132.4

Q ss_pred             eEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCc----hhhcCCC-CCceecccCCCCCCCCCCCCCCC-----CC
Q 002105          256 YLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIP----EEVIQLQ-NLEILHLFSNNFTGKIPSSLASM-----PK  325 (966)
Q Consensus       256 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l-----~~  325 (966)
                      +++++.|.+++.+|..+...++|++|+|++|.+++..+    ..+..++ +|+.|+|++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            45677777777777766666668888888888776655    5566666 67777777777766555545443     66


Q ss_pred             ccEEEccCCcCcccCCccc----cCC-CCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCcccc-CccCc
Q 002105          326 LQVLQLWSNQFSGEIPSNL----GKQ-NNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLST-CKSLR  399 (966)
Q Consensus       326 L~~L~L~~N~l~~~~p~~~----~~~-~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~-l~~L~  399 (966)
                      |++|+|++|.+++..+..+    ..+ ++|+.|+|++|.+++..+..+..                    .+.. .++|+
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~L~  141 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPASIT  141 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTTCC
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCcee
Confidence            7777777777665544433    223 56666666666665543332211                    1111 13455


Q ss_pred             eeeccccccCCcCC----hhhcCCC-cccEEcccCCCCCCccCcchhc----c-CCCcEecCCCCcCCccC----CC-Cc
Q 002105          400 RVRLQNNRLSGELS----SEFTRLP-LVYFLDISGNDLSGRIGEQKWE----M-TSLQMLNLAGNNFSGKL----PD-SF  464 (966)
Q Consensus       400 ~L~L~~N~l~~~~~----~~~~~l~-~L~~LdLs~N~l~~~~~~~~~~----l-~~L~~L~Ls~N~l~~~~----p~-~~  464 (966)
                      +|+|++|++++..+    ..+..++ +|++|+|++|++++..+..+..    . ++|++|+|++|.+++..    +. +.
T Consensus       142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~  221 (362)
T 3goz_A          142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS  221 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence            55555555443222    2223333 5555555555554443333222    2 35555555555554311    11 11


Q ss_pred             C-cccccccccccccccccCC----CcccCcCCCCEEEccCCccCCCCh-------hhccccccccccccCCceeccc
Q 002105          465 G-SDQLENLDLSENRFSGTIP----RSFGRLSELMQLKISRNKLFGDIP-------EELSSCKKLVSLDLSNNQLSGH  530 (966)
Q Consensus       465 ~-~~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p-------~~~~~l~~L~~L~Ls~N~l~~~  530 (966)
                      . .++|++|+|++|.+++..+    ..+..+++|+.|+|++|.+.+..+       ..+..+++|+.||+++|++.+.
T Consensus       222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            1 1244455555554443322    223444555555555555433322       2334455555555555555444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=4.3e-22  Score=219.06  Aligned_cols=203  Identities=24%  Similarity=0.257  Sum_probs=132.8

Q ss_pred             CCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCC----hhhcCCCccc
Q 002105          348 NNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELS----SEFTRLPLVY  423 (966)
Q Consensus       348 ~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~  423 (966)
                      ++|+.|++++|.+++..|..+..                      ..+++|++|+|++|++++..+    ..+..+++|+
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~----------------------~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~  148 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLE----------------------ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLK  148 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSS----------------------CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCC
T ss_pred             CceeEEEeeCCEeccchhhhhhh----------------------ccCCCCCEEEeecccccchhhhhHHHHhhhccCCC
Confidence            44666666666665555544400                      445555555555555554433    2334556666


Q ss_pred             EEcccCCCCCCccCcchhccCCCcEecCCCCcCCcc---CCCC--cCcccccccccccccccccC--CC-cccCcCCCCE
Q 002105          424 FLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGK---LPDS--FGSDQLENLDLSENRFSGTI--PR-SFGRLSELMQ  495 (966)
Q Consensus       424 ~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~--~~~~~L~~L~Ls~N~l~~~~--p~-~~~~l~~L~~  495 (966)
                      +|++++|++.+..+..+..+++|++|+|++|++.+.   .+..  ..+++|++|+|++|+++...  +. .+..+++|++
T Consensus       149 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~  228 (310)
T 4glp_A          149 VLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHS  228 (310)
T ss_dssp             EEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSS
T ss_pred             EEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCE
Confidence            666666666665555666666666666666665542   2221  24567777777777775221  11 2467788888


Q ss_pred             EEccCCccCCCChhhcccc---ccccccccCCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcC
Q 002105          496 LKISRNKLFGDIPEELSSC---KKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISH  572 (966)
Q Consensus       496 L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~  572 (966)
                      |+|++|++.+.+|..+..+   ++|++|+|++|+|+ .+|..+.  ++|+.|||++|++++. |. +..+++|+.|++++
T Consensus       229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~  303 (310)
T 4glp_A          229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDG  303 (310)
T ss_dssp             EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSS
T ss_pred             EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcC
Confidence            8888888888777777766   58888899999888 6777664  7889999999999874 33 56778889999999


Q ss_pred             Ccccc
Q 002105          573 NHFHG  577 (966)
Q Consensus       573 N~l~g  577 (966)
                      |+++.
T Consensus       304 N~l~~  308 (310)
T 4glp_A          304 NPFLV  308 (310)
T ss_dssp             TTTSC
T ss_pred             CCCCC
Confidence            98863

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=8.1e-24  Score=240.56  Aligned_cols=246  Identities=20%  Similarity=0.306  Sum_probs=169.1

Q ss_pred             CCCCCCCCCCccEEEccCCcCcccCC----ccccCCCCCcEEEccCCc---ccccCCCCccCCCCccEEEccCCCCCCCC
Q 002105          316 IPSSLASMPKLQVLQLWSNQFSGEIP----SNLGKQNNLTVIDLSTNF---LTGKIPETLCDSGSLFKLILFSNSLEGKI  388 (966)
Q Consensus       316 ~p~~l~~l~~L~~L~L~~N~l~~~~p----~~~~~~~~L~~L~Ls~N~---l~~~~p~~~~~~~~L~~L~l~~N~l~~~~  388 (966)
                      ++..+..+++|+.|+|++|.+....+    ..+..+++|+.|+|++|.   +++.+|..+..                 +
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~-----------------l   86 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL-----------------L   86 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH-----------------H
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH-----------------H
Confidence            44455566777777777777765433    335567777777777753   33333332210                 0


Q ss_pred             CCccccCccCceeeccccccCC----cCChhhcCCCcccEEcccCCCCCCccCcchh----cc---------CCCcEecC
Q 002105          389 PNSLSTCKSLRRVRLQNNRLSG----ELSSEFTRLPLVYFLDISGNDLSGRIGEQKW----EM---------TSLQMLNL  451 (966)
Q Consensus       389 p~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~----~l---------~~L~~L~L  451 (966)
                      ...+..+++|++|+|++|++++    .++..+..+++|++|+|++|.+++..+..+.    .+         ++|++|+|
T Consensus        87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L  166 (386)
T 2ca6_A           87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC  166 (386)
T ss_dssp             HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred             HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence            0112455666666666666665    3455566666666666666666543333222    22         67777777


Q ss_pred             CCCcCC-ccCCC----CcCccccccccccccccc--c---cCCCcccCcCCCCEEEccCCccC----CCChhhccccccc
Q 002105          452 AGNNFS-GKLPD----SFGSDQLENLDLSENRFS--G---TIPRSFGRLSELMQLKISRNKLF----GDIPEELSSCKKL  517 (966)
Q Consensus       452 s~N~l~-~~~p~----~~~~~~L~~L~Ls~N~l~--~---~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L  517 (966)
                      ++|+++ +.+|.    +..+++|++|++++|+++  |   ..|..+..+++|+.|+|++|.++    +.+|..+..+++|
T Consensus       167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L  246 (386)
T 2ca6_A          167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL  246 (386)
T ss_dssp             CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred             CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence            777776 33332    224467788888888776  3   35557888999999999999986    6788899999999


Q ss_pred             cccccCCceeccc----cCccC--CCCCCCcEEeCCCCcCcc----cCCccc-ccCCCCCeeeCcCCccccc
Q 002105          518 VSLDLSNNQLSGH----IPASL--SEMPVLGQLDLSENQLSG----KIPQTL-GRVASLVQVNISHNHFHGS  578 (966)
Q Consensus       518 ~~L~Ls~N~l~~~----~p~~l--~~l~~L~~LdLs~N~l~g----~~p~~l-~~l~~L~~l~ls~N~l~g~  578 (966)
                      +.|+|++|.+++.    +|..+  +.+++|+.|+|++|++++    .+|..+ .++++|++|++++|++++.
T Consensus       247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            9999999999876    56666  448999999999999998    588877 6689999999999998754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=3.1e-23  Score=231.04  Aligned_cols=255  Identities=18%  Similarity=0.253  Sum_probs=137.6

Q ss_pred             CCCEEEcCCCCCccccChhhhhcC--CCCcEEECCCCCCCCCCC-CCCCCCCcEEeCCCCCCCCc-CCCCcCCCCCcCEE
Q 002105           86 HVESINLSSNQLSGEIPSDIFSSS--NSLRFLNLSNNNFTGPVP-IGSLSRLEILDLSNNMLSGK-IPEEIGSFSGLKVL  161 (966)
Q Consensus        86 ~L~~L~Ls~N~l~g~ip~~~~~~l--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L  161 (966)
                      .++.+|+++|.+.    +..+..+  +.+++|++++|.+.+..+ ...+++|++|+|++|.+++. +|..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            4778888888775    2333433  677777777777776433 35566677777777666544 55556666666666


Q ss_pred             EccCCCCcccCCcCCCCCCCCCEEEccCC-CCcc-cCCcccccCCcceEEEccCC-CCCCC-CCcCccCCC-CCCEEEee
Q 002105          162 DLGGNVLVGEIPLSISNITSLQIFTLASN-QLIG-SIPREIGQLRNLKWIYLGYN-NLSGE-IPKEIGDLT-SLNHLDLV  236 (966)
Q Consensus       162 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~~L~Ls  236 (966)
                      +|++|.+.+..|..++.+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            66666666555555666666666666666 4443 24444555555555555555 44432 233344444 55555555


Q ss_pred             cccccccCCcCCCCCCccceEeccccccC-CCCChhhhcCCCCCEEEccCCc-CcccCchhhcCCCCCceecccCCC-CC
Q 002105          237 YNNLTGQIPPSFGNLSNLRYLFLYQNKLT-GSIPKSILGLKSLVSFDLSDNY-LSGEIPEEVIQLQNLEILHLFSNN-FT  313 (966)
Q Consensus       237 ~N~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~-l~  313 (966)
                      +|.+                      .++ +.+|..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.
T Consensus       204 ~~~~----------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  261 (336)
T 2ast_B          204 GYRK----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  261 (336)
T ss_dssp             SCGG----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             CCcc----------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence            5421                      222 2233444445555555555555 444444455555555555555553 11


Q ss_pred             CCCCCCCCCCCCccEEEccCCcCcccCCccccCC-CCCcEEEccCCcccccCCCCccC
Q 002105          314 GKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQ-NNLTVIDLSTNFLTGKIPETLCD  370 (966)
Q Consensus       314 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~  370 (966)
                      ......+..+++|+.|++++| ++..   .+..+ .++..|++++|.+++..|..+..
T Consensus       262 ~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          262 PETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             GGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             HHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence            111113455666666666665 2211   12222 12445556777777766665543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2.9e-21  Score=203.91  Aligned_cols=196  Identities=19%  Similarity=0.190  Sum_probs=105.8

Q ss_pred             CCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCC-CcccCCcCCCCCCCCCEEEccC-CCCcccCCcccccCCcceEEE
Q 002105          133 RLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNV-LVGEIPLSISNITSLQIFTLAS-NQLIGSIPREIGQLRNLKWIY  210 (966)
Q Consensus       133 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~  210 (966)
                      +|++|+|++|++++..+..|..+++|++|++++|. +....+..|.++++|++|++++ |++++..+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            34444444444444444455556666666666664 5444444555566666666665 555554455555666666666


Q ss_pred             ccCCCCCCCCCcCccCCCCCC---EEEeecc-cccccCCcCCCCCCccc-eEeccccccCCCCChhhhcCCCCCEEEccC
Q 002105          211 LGYNNLSGEIPKEIGDLTSLN---HLDLVYN-NLTGQIPPSFGNLSNLR-YLFLYQNKLTGSIPKSILGLKSLVSFDLSD  285 (966)
Q Consensus       211 L~~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  285 (966)
                      +++|.+++ +|. +..+++|+   +|++++| ++++..+..|.++++|+ +|++++|+++ .+|......++|+.|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence            66666654 444 55555555   6666666 66655555566666666 6666666665 2333222225566666666


Q ss_pred             Cc-CcccCchhhcCC-CCCceecccCCCCCCCCCCCCCCCCCccEEEccCC
Q 002105          286 NY-LSGEIPEEVIQL-QNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSN  334 (966)
Q Consensus       286 N~-l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  334 (966)
                      |. +++..+..|..+ ++|+.|++++|++++. |..  .+++|+.|+++++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence            63 554444455555 5555555555555532 222  3445555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.86  E-value=9.5e-22  Score=231.61  Aligned_cols=209  Identities=25%  Similarity=0.409  Sum_probs=126.0

Q ss_pred             CCCCCCCCCCC-----cccce-eeCCCCCEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCc
Q 002105           40 LSNWDSSVTFC-----KWNGI-SCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLR  113 (966)
Q Consensus        40 l~~w~~~~~~c-----~w~gv-~c~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~  113 (966)
                      +.+|..+.++|     .|.|+ .|.. ++++.|+|++|+|++ +|..+.  ++|++|+|++|+|+ .||    ..+++|+
T Consensus        33 l~~W~~~~~~~~~~~~~~~~l~~C~~-~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip----~~l~~L~  103 (571)
T 3cvr_A           33 WDKWEKQALPGENRNEAVSLLKECLI-NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP----ELPASLE  103 (571)
T ss_dssp             HHHHHTTCCTTCCHHHHHHHHHHHHH-TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC----CCCTTCC
T ss_pred             HHHHhccCCccccccchhhhcccccc-CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc----cccCCCC
Confidence            44575555677     79999 6853 356667777777665 454442  56666666666665 455    1234555


Q ss_pred             EEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCc
Q 002105          114 FLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLI  193 (966)
Q Consensus       114 ~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~  193 (966)
                      +|+|++|.|++                       +|. +..  +|++|+|++|.+++ +|.   .+++|++|++++|.++
T Consensus       104 ~L~Ls~N~l~~-----------------------ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A          104 YLDACDNRLST-----------------------LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT  153 (571)
T ss_dssp             EEECCSSCCSC-----------------------CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             EEEccCCCCCC-----------------------cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC
Confidence            55555555544                       333 332  45555555555444 333   3455555555555555


Q ss_pred             ccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCcc-------ceEeccccccCC
Q 002105          194 GSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNL-------RYLFLYQNKLTG  266 (966)
Q Consensus       194 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~L~~n~l~~  266 (966)
                      + +|.   .+++|++|+|++|.+++ +|. |.  ++|++|+|++|+|+ .+|. |..  +|       +.|+|++|+++ 
T Consensus       154 ~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-  220 (571)
T 3cvr_A          154 M-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-  220 (571)
T ss_dssp             C-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-
T ss_pred             c-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-
Confidence            4 333   34556666666666654 444 44  66666666666666 4554 443  55       88888888887 


Q ss_pred             CCChhhhcCCCCCEEEccCCcCcccCchhhcCCC
Q 002105          267 SIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQ  300 (966)
Q Consensus       267 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  300 (966)
                      .+|..+..+++|+.|+|++|.+++.+|..+..+.
T Consensus       221 ~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            4677777788888888888888888887776543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=2.1e-21  Score=213.61  Aligned_cols=204  Identities=20%  Similarity=0.187  Sum_probs=116.0

Q ss_pred             CCCcEEeCCCCCCCCcCCCCc--CCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEE
Q 002105          132 SRLEILDLSNNMLSGKIPEEI--GSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWI  209 (966)
Q Consensus       132 ~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  209 (966)
                      ++|++|+|++|.+++..|..+  ..+++|++|+|++|.+.+..|..                    ....+..+++|++|
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~--------------------~~~~~~~~~~L~~L  150 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL--------------------AELQQWLKPGLKVL  150 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH--------------------HHHHTTBCSCCCEE
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh--------------------HHHHhhhccCCCEE
Confidence            345555555555555555554  55555555555555554322200                    00223345566666


Q ss_pred             EccCCCCCCCCCcCccCCCCCCEEEeeccccccc--C--CcCCCCCCccceEeccccccCCCCCh----hhhcCCCCCEE
Q 002105          210 YLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQ--I--PPSFGNLSNLRYLFLYQNKLTGSIPK----SILGLKSLVSF  281 (966)
Q Consensus       210 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~--p~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L  281 (966)
                      +|++|.+++..|..|+.+++|++|++++|++.+.  +  +..++++++|++|+|++|+++. ++.    .+.++++|++|
T Consensus       151 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L  229 (310)
T 4glp_A          151 SIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSL  229 (310)
T ss_dssp             EEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSE
T ss_pred             EeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEE
Confidence            6666666655556666666666666666665431  1  2233566777777777777652 222    24566777777


Q ss_pred             EccCCcCcccCchhhcCC---CCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCC
Q 002105          282 DLSDNYLSGEIPEEVIQL---QNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTN  358 (966)
Q Consensus       282 ~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N  358 (966)
                      +|++|.+++..|..+..+   ++|+.|++++|+++ .+|..+.  ++|+.|+|++|++++. |. +..+++|+.|+|++|
T Consensus       230 ~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          230 DLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGN  304 (310)
T ss_dssp             ECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSST
T ss_pred             ECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCC
Confidence            777777766656555554   46666666666666 4455443  5666666666666643 22 445566666666666


Q ss_pred             ccc
Q 002105          359 FLT  361 (966)
Q Consensus       359 ~l~  361 (966)
                      .++
T Consensus       305 ~l~  307 (310)
T 4glp_A          305 PFL  307 (310)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=8.5e-24  Score=240.40  Aligned_cols=246  Identities=21%  Similarity=0.275  Sum_probs=180.9

Q ss_pred             cCchhhcCCCCCceecccCCCCCCC----CCCCCCCCCCccEEEccCC---cCcccCCccc-------cCCCCCcEEEcc
Q 002105          291 EIPEEVIQLQNLEILHLFSNNFTGK----IPSSLASMPKLQVLQLWSN---QFSGEIPSNL-------GKQNNLTVIDLS  356 (966)
Q Consensus       291 ~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N---~l~~~~p~~~-------~~~~~L~~L~Ls  356 (966)
                      .++..+..+++|+.|+|++|.++..    ++..+..+++|++|+|++|   ++++.+|..+       ..+++|+.|+|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            4567788899999999999999865    3345788999999999996   4556666555       577788888888


Q ss_pred             CCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhc----CC---------Cccc
Q 002105          357 TNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFT----RL---------PLVY  423 (966)
Q Consensus       357 ~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~l---------~~L~  423 (966)
                      +|.+++.-..                    .+|..+..+++|++|+|++|.+++..+..+.    .+         ++|+
T Consensus       103 ~n~l~~~~~~--------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~  162 (386)
T 2ca6_A          103 DNAFGPTAQE--------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR  162 (386)
T ss_dssp             SCCCCTTTHH--------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             CCcCCHHHHH--------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence            8877652000                    1233444555666666666666533332222    22         6777


Q ss_pred             EEcccCCCCC-CccC---cchhccCCCcEecCCCCcCC--c---cCC-CCcCccccccccccccccc----ccCCCcccC
Q 002105          424 FLDISGNDLS-GRIG---EQKWEMTSLQMLNLAGNNFS--G---KLP-DSFGSDQLENLDLSENRFS----GTIPRSFGR  489 (966)
Q Consensus       424 ~LdLs~N~l~-~~~~---~~~~~l~~L~~L~Ls~N~l~--~---~~p-~~~~~~~L~~L~Ls~N~l~----~~~p~~~~~  489 (966)
                      +|++++|+++ +.++   ..+..+++|++|+|++|.++  |   ..| .+..+++|+.|+|++|.++    +.+|..+..
T Consensus       163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~  242 (386)
T 2ca6_A          163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS  242 (386)
T ss_dssp             EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred             EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence            7777777776 3333   34556778888888888877  3   344 3456678888899999886    567888899


Q ss_pred             cCCCCEEEccCCccCCC----Chhhcc--ccccccccccCCceecc----ccCccC-CCCCCCcEEeCCCCcCcccCC
Q 002105          490 LSELMQLKISRNKLFGD----IPEELS--SCKKLVSLDLSNNQLSG----HIPASL-SEMPVLGQLDLSENQLSGKIP  556 (966)
Q Consensus       490 l~~L~~L~Ls~N~l~~~----~p~~~~--~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~LdLs~N~l~g~~p  556 (966)
                      +++|+.|+|++|++++.    +|..+.  .+++|+.|+|++|.+++    .+|..+ .++++|+.|+|++|++++..|
T Consensus       243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            99999999999999876    566764  48999999999999998    588777 668999999999999998764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=5.6e-21  Score=201.70  Aligned_cols=195  Identities=16%  Similarity=0.166  Sum_probs=124.6

Q ss_pred             CcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCC-CcccCCcccccCCcceEEEccC-CCCCCCCCcCccCCCCCCEEE
Q 002105          157 GLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQ-LIGSIPREIGQLRNLKWIYLGY-NNLSGEIPKEIGDLTSLNHLD  234 (966)
Q Consensus       157 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~  234 (966)
                      +|++|++++|.+++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |.+++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            78888888888877666677778888888888886 6665556777777777777777 777755556677777777777


Q ss_pred             eecccccccCCcCCCCCCccc---eEecccc-ccCCCCChhhhcCCCCC-EEEccCCcCcccCchhhcCCCCCceecccC
Q 002105          235 LVYNNLTGQIPPSFGNLSNLR---YLFLYQN-KLTGSIPKSILGLKSLV-SFDLSDNYLSGEIPEEVIQLQNLEILHLFS  309 (966)
Q Consensus       235 Ls~N~l~~~~p~~~~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  309 (966)
                      +++|.+++ +|. |..+++|+   +|++++| ++++..+..|.++++|+ +|++++|.++ .+|......++|+.|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence            77777775 554 66666666   7777777 66655555566666666 6666666666 3333322225566666666


Q ss_pred             CC-CCCCCCCCCCCC-CCccEEEccCCcCcccCCccccCCCCCcEEEccC
Q 002105          310 NN-FTGKIPSSLASM-PKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLST  357 (966)
Q Consensus       310 N~-l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~  357 (966)
                      |. +++..+..|.++ ++|+.|++++|++++ +|..  .+.+|+.|++++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~  235 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARN  235 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTT
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccC
Confidence            63 554444555555 555555555555553 2222  344455555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=5e-23  Score=231.73  Aligned_cols=155  Identities=17%  Similarity=0.124  Sum_probs=86.8

Q ss_pred             EEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCC----cccccCC-cceEEEccCCCCCCCCCcCccCC-----CC
Q 002105          160 VLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIP----REIGQLR-NLKWIYLGYNNLSGEIPKEIGDL-----TS  229 (966)
Q Consensus       160 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l-----~~  229 (966)
                      +++|+.|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|+|++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35667777777777666666667777777777665554    4555566 66677777666665555555443     66


Q ss_pred             CCEEEeecccccccCCcCCC----CC-CccceEeccccccCCCCChhhhc-----CCCCCEEEccCCcCcccCc----hh
Q 002105          230 LNHLDLVYNNLTGQIPPSFG----NL-SNLRYLFLYQNKLTGSIPKSILG-----LKSLVSFDLSDNYLSGEIP----EE  295 (966)
Q Consensus       230 L~~L~Ls~N~l~~~~p~~~~----~l-~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~~~p----~~  295 (966)
                      |++|+|++|.+++..+..+.    .+ ++|++|+|++|++++..+..+..     .++|++|+|++|.+++..+    ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            66666666666654444322    22 55666666666665544433322     2456666666665553222    22


Q ss_pred             hcCCC-CCceecccCCCCCC
Q 002105          296 VIQLQ-NLEILHLFSNNFTG  314 (966)
Q Consensus       296 ~~~l~-~L~~L~L~~N~l~~  314 (966)
                      +..++ +|+.|+|++|++++
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGG
T ss_pred             HhcCCccccEeeecCCCCch
Confidence            22332 44444544444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=2.3e-20  Score=198.59  Aligned_cols=179  Identities=26%  Similarity=0.253  Sum_probs=99.6

Q ss_pred             CCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCC
Q 002105          111 SLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASN  190 (966)
Q Consensus       111 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n  190 (966)
                      ..++++++++.++. +|.+-.++|++|+|++|.+++..+..|..+++|++|+|++|.+.+..|..|.++++|++|++++|
T Consensus        15 ~~~~l~~~~~~l~~-~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           15 GKKEVDCQGKSLDS-VPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             GGTEEECTTCCCSS-CCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCeEEecCCCCccc-cCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            45566666666653 33333356666666666666655556666666666666666666555555556666666666666


Q ss_pred             CCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCCh
Q 002105          191 QLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPK  270 (966)
Q Consensus       191 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~  270 (966)
                      ++++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|+++++|++|+|++|++++..+.
T Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  173 (251)
T 3m19_A           94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG  173 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence            65555445555555555555555555544444455555555555555555544444455555555555555555544444


Q ss_pred             hhhcCCCCCEEEccCCcCcc
Q 002105          271 SILGLKSLVSFDLSDNYLSG  290 (966)
Q Consensus       271 ~l~~l~~L~~L~Ls~N~l~~  290 (966)
                      .+..+++|+.|++++|.+..
T Consensus       174 ~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          174 AFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTTCTTCCEEECCSCCBCT
T ss_pred             HHhCCCCCCEEEeeCCceeC
Confidence            45555555555555555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=3.5e-21  Score=211.30  Aligned_cols=193  Identities=24%  Similarity=0.361  Sum_probs=94.2

Q ss_pred             CCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceE
Q 002105          129 GSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKW  208 (966)
Q Consensus       129 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  208 (966)
                      ..+++|++|++++|.++. +| .+..+++|++|+|++|.+.+..+  +.++++|++|++++|++.+.  +.+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            334455555555555542 22 34555555555555555543322  55555555555555555432  23455555555


Q ss_pred             EEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcC
Q 002105          209 IYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYL  288 (966)
Q Consensus       209 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  288 (966)
                      |++++|.+++ ++ .+..+++|++|++++|.+++..+  ++++++|++|++++|++++. +. +..+++|+.|++++|.+
T Consensus       112 L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          112 LDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             EECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCcc
Confidence            5555555543 22 25555555555555555553222  45555555555555555432 22 45555555555555555


Q ss_pred             cccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCc
Q 002105          289 SGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS  337 (966)
Q Consensus       289 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  337 (966)
                      ++..+  +..+++|+.|++++|++++..+  +..+++|+.|++++|.++
T Consensus       186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred             CcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence            43322  4444455555555555443321  444555555555555544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=5.5e-21  Score=209.80  Aligned_cols=193  Identities=25%  Similarity=0.380  Sum_probs=95.7

Q ss_pred             CCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEE
Q 002105           83 HLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLD  162 (966)
Q Consensus        83 ~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  162 (966)
                      .+++|++|++++|.+. .+|.  +..+++|++|+|++|.+++..++..+++|++|+|++|.+++. + .+..+++|++|+
T Consensus        39 ~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEE
T ss_pred             HcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEE
Confidence            4555666666666655 3442  334455555555555555433345555555555555555432 2 344555555555


Q ss_pred             ccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccc
Q 002105          163 LGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG  242 (966)
Q Consensus       163 L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  242 (966)
                      |++|.+.+. | .+..+++|++|++++|.+++..+                          ++.+++|++|++++|++++
T Consensus       114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--------------------------l~~l~~L~~L~l~~n~l~~  165 (308)
T 1h6u_A          114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--------------------------LAGLTNLQYLSIGNAQVSD  165 (308)
T ss_dssp             CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--------------------------GGGCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--------------------------ccCCCCccEEEccCCcCCC
Confidence            555554432 1 14444444444444444443221                          4444455555555555443


Q ss_pred             cCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCC
Q 002105          243 QIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTG  314 (966)
Q Consensus       243 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  314 (966)
                      . +. +.++++|++|++++|++++..+  +..+++|++|++++|.+++..  .+..+++|+.|++++|.+++
T Consensus       166 ~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          166 L-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             C-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             C-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            2 22 4455555555555555543222  455555555555555555433  24555556666666655543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=4.9e-20  Score=217.01  Aligned_cols=188  Identities=27%  Similarity=0.368  Sum_probs=158.9

Q ss_pred             CCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCC
Q 002105          111 SLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASN  190 (966)
Q Consensus       111 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n  190 (966)
                      +|++|+|++|.+++ +|..-+++|++|+|++|+|+ .+|   ..+++|++|+|++|.+++ +|. +.+  +|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLPPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCCTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCc-cCHhHcCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence            78888888888876 55444578999999999998 566   457999999999999997 777 666  9999999999


Q ss_pred             CCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCCh
Q 002105          191 QLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPK  270 (966)
Q Consensus       191 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~  270 (966)
                      ++++ +|.   .+++|++|+|++|.+++ +|.   .+++|++|+|++|++++ +|. |.  ++|++|+|++|+++ .+|.
T Consensus       131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~  197 (571)
T 3cvr_A          131 QLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA  197 (571)
T ss_dssp             CCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC
T ss_pred             cCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh
Confidence            9997 666   68999999999999986 666   57899999999999997 777 66  89999999999998 5666


Q ss_pred             hhhcCCCC-------CEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCC
Q 002105          271 SILGLKSL-------VSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMP  324 (966)
Q Consensus       271 ~l~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  324 (966)
                       +..  +|       +.|+|++|.|+ .+|..+..+++|+.|+|++|.+++.+|..+..++
T Consensus       198 -~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          198 -VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             -CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             -HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence             554  77       99999999998 5788888899999999999999998887766543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=4.6e-20  Score=206.44  Aligned_cols=221  Identities=19%  Similarity=0.169  Sum_probs=121.9

Q ss_pred             CccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCC-CCccCCCCccE-EEccCCCCCCCCCCccccCccCceee
Q 002105          325 KLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIP-ETLCDSGSLFK-LILFSNSLEGKIPNSLSTCKSLRRVR  402 (966)
Q Consensus       325 ~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p-~~~~~~~~L~~-L~l~~N~l~~~~p~~~~~l~~L~~L~  402 (966)
                      ++++|+|++|+++...+..|..+++|+.|+|++|.+.+.+| ..|.+++++.. +.+.+|+++...|..|..+++|++|+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            34444444444443333344444445555555554433333 23344444433 34445555555566666667777777


Q ss_pred             ccccccCCcCChhhcCCCcccEEcccC-CCCCCccCcchhcc-CCCcEecCCCCcCCccCCCCcCccccccccccc-ccc
Q 002105          403 LQNNRLSGELSSEFTRLPLVYFLDISG-NDLSGRIGEQKWEM-TSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSE-NRF  479 (966)
Q Consensus       403 L~~N~l~~~~~~~~~~l~~L~~LdLs~-N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~Ls~-N~l  479 (966)
                      +++|++.+..+..+.....+..|++++ |++....+..+..+ ..++.|+|++|+|+...+..|...+|+.|++++ |.+
T Consensus       111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l  190 (350)
T 4ay9_X          111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL  190 (350)
T ss_dssp             EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTC
T ss_pred             ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcc
Confidence            777777666666666666666676654 45554444444444 346677777777776555566666677777764 444


Q ss_pred             cccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCC
Q 002105          480 SGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSEN  549 (966)
Q Consensus       480 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N  549 (966)
                      +...+..|..+++|+.|||++|+|+...+..+.++++|+.+++.+  ++ .+| .+..+++|+.++++++
T Consensus       191 ~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~--l~-~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          191 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN--LK-KLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTT--CC-CCC-CTTTCCSCCEEECSCH
T ss_pred             cCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCC--cC-cCC-CchhCcChhhCcCCCC
Confidence            433334566777777777777776655444555555555544422  22 344 2555566666666544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=7e-20  Score=188.82  Aligned_cols=61  Identities=31%  Similarity=0.341  Sum_probs=25.4

Q ss_pred             CCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCc
Q 002105          133 RLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLI  193 (966)
Q Consensus       133 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~  193 (966)
                      +|++|+|++|.+++..+..|..+++|++|+|++|.+.+..+..|.++++|++|++++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~   89 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ   89 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence            4444444444444333333444444444444444444333333333444444444444333

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=6.7e-20  Score=205.12  Aligned_cols=197  Identities=18%  Similarity=0.099  Sum_probs=98.0

Q ss_pred             CEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCC--CCCCCCCCcEEeCCCCCCCCcCC-CCcCCCCCcCE-EEc
Q 002105           88 ESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPV--PIGSLSRLEILDLSNNMLSGKIP-EEIGSFSGLKV-LDL  163 (966)
Q Consensus        88 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L  163 (966)
                      ++++.++|+++ .||..+.   +++++|+|++|+|+...  .+.++++|++|+|++|++.+.+| ..|.++++|+. +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56777778877 6776542   45666666666665321  24555555555555555544333 34455555443 344


Q ss_pred             cCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccC-CCCCCCCCcCccCCC-CCCEEEeeccccc
Q 002105          164 GGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGY-NNLSGEIPKEIGDLT-SLNHLDLVYNNLT  241 (966)
Q Consensus       164 ~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~  241 (966)
                      ++|++....|..|.++++|++|++++|++....+..+....++..|++.+ +.+....+..|..+. .++.|++++|+++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            44555554455555555555555555555544444444444455555533 333322233343332 3455555555555


Q ss_pred             ccCCcCCCCCCccceEeccc-cccCCCCChhhhcCCCCCEEEccCCcCc
Q 002105          242 GQIPPSFGNLSNLRYLFLYQ-NKLTGSIPKSILGLKSLVSFDLSDNYLS  289 (966)
Q Consensus       242 ~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  289 (966)
                      . +|.......+|++|++.+ |.++...+..|.++++|++||+++|+++
T Consensus       168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             C-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence            3 222222334455555543 3333222234455555555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=2.1e-19  Score=185.20  Aligned_cols=181  Identities=25%  Similarity=0.242  Sum_probs=144.4

Q ss_pred             cEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCC
Q 002105          135 EILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYN  214 (966)
Q Consensus       135 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N  214 (966)
                      +.++.+++.++. +|..+  .++|++|++++|.+.+..+..|.++++|++|++++|++++..+..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            567777777763 45443  468999999999998777777888999999999999988766667788889999999999


Q ss_pred             CCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCch
Q 002105          215 NLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPE  294 (966)
Q Consensus       215 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  294 (966)
                      .+++..+..|.++++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|++++|.+.+.   
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~---  163 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT---  163 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC---
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC---
Confidence            88876666788888888898888888876666788888888888888888876666688888888888888876643   


Q ss_pred             hhcCCCCCceecccCCCCCCCCCCCCCCCCC
Q 002105          295 EVIQLQNLEILHLFSNNFTGKIPSSLASMPK  325 (966)
Q Consensus       295 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  325 (966)
                          +++|+.|+++.|+++|.+|.+++.++.
T Consensus       164 ----~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          164 ----CPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             ----TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ----CCCHHHHHHHHHhCCceeeccCccccC
Confidence                456788888888888888877776654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.77  E-value=3.9e-20  Score=226.01  Aligned_cols=206  Identities=23%  Similarity=0.222  Sum_probs=77.2

Q ss_pred             cHHHHHHHHHHhhcCCCC-CCCCCCCCCC-CCCCcccceeeCCCCCEEEEEcCCCCccccccccccCCCCCCEEEcCCCC
Q 002105           19 HGAELELLLSFKSTVNDP-YNFLSNWDSS-VTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQ   96 (966)
Q Consensus        19 ~~~~~~~Ll~~k~~~~~~-~~~l~~w~~~-~~~c~w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~   96 (966)
                      .+.++++|+++..+.... ...-..|... +..+.|.++++.. ++++.|+|..+++...                    
T Consensus       130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~--------------------  188 (727)
T 4b8c_D          130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST-PLTPKIELFANGKDEA--------------------  188 (727)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred             cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC-CccceEEeeCCCCCcc--------------------
Confidence            355678888887665311 1223456433 4567888887754 4566666666655531                    


Q ss_pred             CccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCC
Q 002105           97 LSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSI  176 (966)
Q Consensus        97 l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  176 (966)
                           +.      ..|+.++|+.|.|.            .++++.|.+. ..|+.+..+++|++|+|++|.+. .+|..+
T Consensus       189 -----~~------~~l~~l~Ls~~~i~------------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~  243 (727)
T 4b8c_D          189 -----NQ------ALLQHKKLSQYSID------------EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANI  243 (727)
T ss_dssp             ---------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGG
T ss_pred             -----hh------hHhhcCccCccccc------------Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhh
Confidence                 11      12333334433332            2334444443 44555566666666666666655 444445


Q ss_pred             CCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccce
Q 002105          177 SNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRY  256 (966)
Q Consensus       177 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  256 (966)
                      .++++|++|+|++|.++ .+|..|+++++|++|+|++|.|+ .+|..|++|++|++|+|++|.++ .+|..|+++++|++
T Consensus       244 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~  320 (727)
T 4b8c_D          244 FKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQF  320 (727)
T ss_dssp             GGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCC
T ss_pred             cCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccE
Confidence            55555555555555555 45555555556666666666555 45555555555555555555554 44555555555555


Q ss_pred             EeccccccCCCCChhhh
Q 002105          257 LFLYQNKLTGSIPKSIL  273 (966)
Q Consensus       257 L~L~~n~l~~~~p~~l~  273 (966)
                      |+|++|.+++.+|..+.
T Consensus       321 L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          321 LGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             EECTTSCCCSHHHHHHH
T ss_pred             EeCCCCccCCCChHHHh
Confidence            55555555555554443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=5.1e-18  Score=177.52  Aligned_cols=163  Identities=24%  Similarity=0.307  Sum_probs=91.1

Q ss_pred             CCCCCCCCCcccceeeCCCCCEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCC
Q 002105           42 NWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNN  121 (966)
Q Consensus        42 ~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~  121 (966)
                      -|..+.+.|+|.+|.|+..           +++ .+|..+.  ++|++|+|++|+|++ +++..|..+++|++|+|++|+
T Consensus        11 ~~~~~~~~Cs~~~v~c~~~-----------~l~-~ip~~~~--~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~   75 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRSK-----------RHA-SVPAGIP--TNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQ   75 (229)
T ss_dssp             CCCCTTCEEETTEEECTTS-----------CCS-SCCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCCCCEEeCCEeEccCC-----------CcC-ccCCCCC--CCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCC
Confidence            3444568899999999643           222 3333332  667777777777774 433444444555555555555


Q ss_pred             CCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccc
Q 002105          122 FTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIG  201 (966)
Q Consensus       122 l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~  201 (966)
                      |+                      +..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|+++ .+|..+.
T Consensus        76 l~----------------------~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  132 (229)
T 3e6j_A           76 LG----------------------ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE  132 (229)
T ss_dssp             CC----------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG
T ss_pred             CC----------------------CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc
Confidence            54                      333334445555555555555555444444455555555555555555 3455555


Q ss_pred             cCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccc
Q 002105          202 QLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG  242 (966)
Q Consensus       202 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  242 (966)
                      .+++|++|+|++|.+++..+..|..+++|++|++++|.+..
T Consensus       133 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            55666666666666654444555666666666666666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=2.2e-18  Score=179.13  Aligned_cols=137  Identities=20%  Similarity=0.217  Sum_probs=114.7

Q ss_pred             CCcEecCCCCcCCccCCC--CcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhcccccccccccc
Q 002105          445 SLQMLNLAGNNFSGKLPD--SFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDL  522 (966)
Q Consensus       445 ~L~~L~Ls~N~l~~~~p~--~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  522 (966)
                      .++.|+|++|++++..|.  +..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            345666666666665443  235667777788888887777778889999999999999999888888999999999999


Q ss_pred             CCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCcccccCCC
Q 002105          523 SNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPS  581 (966)
Q Consensus       523 s~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~ip~  581 (966)
                      ++|+|++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++++.++.
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            99999988899999999999999999999998899999999999999999999887653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=5.1e-19  Score=210.77  Aligned_cols=171  Identities=22%  Similarity=0.316  Sum_probs=78.4

Q ss_pred             cCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEE
Q 002105           82 FHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVL  161 (966)
Q Consensus        82 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  161 (966)
                      ..|++|+.|+|++|.+. .+|.  +..+++|++|+|++|.+++..++..+++|++|+|++|.+++ +| .+..+++|++|
T Consensus        40 ~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL  114 (605)
T ss_dssp             HHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred             hcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence            34555555555555554 3332  33445555555555555544444555555555555555543 12 34445555555


Q ss_pred             EccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeeccccc
Q 002105          162 DLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLT  241 (966)
Q Consensus       162 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  241 (966)
                      +|++|.+.+.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|+++
T Consensus       115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            5555544431  2244444444444444444432  334444444444444444443322  444444444444444444


Q ss_pred             ccCCcCCCCCCccceEeccccccC
Q 002105          242 GQIPPSFGNLSNLRYLFLYQNKLT  265 (966)
Q Consensus       242 ~~~p~~~~~l~~L~~L~L~~n~l~  265 (966)
                      +.  +.+..+++|+.|+|++|++.
T Consensus       189 ~l--~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          189 DL--RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             BC--GGGTTCTTCSEEECCSEEEE
T ss_pred             CC--hHHccCCCCCEEEccCCcCc
Confidence            31  22344444444444444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=1.2e-18  Score=207.71  Aligned_cols=187  Identities=23%  Similarity=0.353  Sum_probs=81.6

Q ss_pred             CCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCC
Q 002105           87 VESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGN  166 (966)
Q Consensus        87 L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  166 (966)
                      +..++++.+.+...++   ...+++|+.|+|++|.+....++..+++|++|+|++|.+++..|  +..+++|+.|+|++|
T Consensus        23 l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N   97 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN   97 (605)
T ss_dssp             HHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             HHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence            3344455555443222   12335555555555555543334445555555555555554322  445555555555555


Q ss_pred             CCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCc
Q 002105          167 VLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP  246 (966)
Q Consensus       167 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  246 (966)
                      .+.+ +| .+..+++|+.|+|++|.+.+.  +.+..+++|+.|+|++|.+++.  ..++.+++|+.|+|++|.+++..| 
T Consensus        98 ~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-  170 (605)
T 1m9s_A           98 KIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-  170 (605)
T ss_dssp             CCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred             CCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence            5443 11 344444444444444444431  2344444444444444444432  234444444444444444443222 


Q ss_pred             CCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcC
Q 002105          247 SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYL  288 (966)
Q Consensus       247 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  288 (966)
                       +..+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+
T Consensus       171 -l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          171 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEE
T ss_pred             -hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcC
Confidence             33444444444444444321  1233334444444444433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=1.1e-18  Score=189.59  Aligned_cols=161  Identities=25%  Similarity=0.352  Sum_probs=72.0

Q ss_pred             CCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccC
Q 002105          117 LSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSI  196 (966)
Q Consensus       117 Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  196 (966)
                      +..+.+++..+...+++|++|++++|.++.. + .+..+++|++|+|++|.+.+..+  +.++++|++|++++|.+++ +
T Consensus        31 l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~  105 (291)
T 1h6t_A           31 LKKKSVTDAVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L  105 (291)
T ss_dssp             TTCSCTTSEECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G
T ss_pred             hcCCCcccccchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C
Confidence            3333333333333444455555555554432 2 24445555555555555543322  4455555555555555443 1


Q ss_pred             CcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCC
Q 002105          197 PREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLK  276 (966)
Q Consensus       197 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  276 (966)
                       +.+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.  ..+..+++|++|++++|++++..+  +..++
T Consensus       106 -~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~  178 (291)
T 1h6t_A          106 -SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLT  178 (291)
T ss_dssp             -GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred             -hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCC
Confidence             1244445555555555544431  2344444445555544444432  334444444444444444443222  44444


Q ss_pred             CCCEEEccCCcCc
Q 002105          277 SLVSFDLSDNYLS  289 (966)
Q Consensus       277 ~L~~L~Ls~N~l~  289 (966)
                      +|+.|++++|.++
T Consensus       179 ~L~~L~L~~N~i~  191 (291)
T 1h6t_A          179 KLQNLYLSKNHIS  191 (291)
T ss_dssp             TCCEEECCSSCCC
T ss_pred             ccCEEECCCCcCC
Confidence            4444444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=6.5e-18  Score=175.49  Aligned_cols=133  Identities=21%  Similarity=0.207  Sum_probs=70.2

Q ss_pred             CcEEeCCCCCCCCcCC-CCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEcc
Q 002105          134 LEILDLSNNMLSGKIP-EEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLG  212 (966)
Q Consensus       134 L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  212 (966)
                      +++|+|++|++++..| ..|..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            3444444444444322 234555555555555555554444455555555555555555555444445555555555555


Q ss_pred             CCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCC
Q 002105          213 YNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTG  266 (966)
Q Consensus       213 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~  266 (966)
                      +|.+++..|..|..+++|++|+|++|++++..|..|..+++|++|+|++|.+..
T Consensus       114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            555555555555555555555555555555555555555555555555555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=3.8e-18  Score=191.59  Aligned_cols=176  Identities=23%  Similarity=0.194  Sum_probs=84.8

Q ss_pred             CEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcC-CCCCcCEEEccCC
Q 002105           88 ESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIG-SFSGLKVLDLGGN  166 (966)
Q Consensus        88 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N  166 (966)
                      +++++++|++. .+|..+.   ..+++|+|++|+|+                      +..+..+. .+++|++|+|++|
T Consensus        21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~----------------------~l~~~~~~~~l~~L~~L~L~~N   74 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLS----------------------RLRAEWTPTRLTNLHSLLLSHN   74 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCC----------------------EECTTSSSSCCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCC----------------------ccChhhhhhcccccCEEECCCC
Confidence            46778877776 5665432   33555555555554                      33333333 4444444444444


Q ss_pred             CCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCc
Q 002105          167 VLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP  246 (966)
Q Consensus       167 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  246 (966)
                      .+.+..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..+.
T Consensus        75 ~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  154 (361)
T 2xot_A           75 HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE  154 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred             cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence            44444334444444444444444444443334444444444444444444444444455555555555555555432222


Q ss_pred             CC---CCCCccceEeccccccCCCCChhhhcCCC--CCEEEccCCcCc
Q 002105          247 SF---GNLSNLRYLFLYQNKLTGSIPKSILGLKS--LVSFDLSDNYLS  289 (966)
Q Consensus       247 ~~---~~l~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~N~l~  289 (966)
                      .|   .++++|++|+|++|++++..+..+..++.  |+.|+|++|.+.
T Consensus       155 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            22   34555555555555555443344444444  245555555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=4.3e-18  Score=184.97  Aligned_cols=169  Identities=24%  Similarity=0.380  Sum_probs=92.0

Q ss_pred             CCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccC
Q 002105          110 NSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLAS  189 (966)
Q Consensus       110 ~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  189 (966)
                      ++|++|++++|.++....+..+++|++|+|++|++++..+  +..+++|++|+|++|.+.+ +| .+..+++|++|++++
T Consensus        46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEH  121 (291)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTT
T ss_pred             CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCC
Confidence            4444444444444433223444555555555555543322  5555555555555555543 12 255555555555555


Q ss_pred             CCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCC
Q 002105          190 NQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIP  269 (966)
Q Consensus       190 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  269 (966)
                      |++++.  +.+..+++|++|++++|.+++.  ..++.+++|++|++++|++++..|  +..+++|++|++++|++++ ++
T Consensus       122 n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~  194 (291)
T 1h6t_A          122 NGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR  194 (291)
T ss_dssp             SCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG
T ss_pred             CcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch
Confidence            555542  3455566666666666666543  456666666666666666664333  6666666666666666654 23


Q ss_pred             hhhhcCCCCCEEEccCCcCcc
Q 002105          270 KSILGLKSLVSFDLSDNYLSG  290 (966)
Q Consensus       270 ~~l~~l~~L~~L~Ls~N~l~~  290 (966)
                       .+..+++|+.|++++|.++.
T Consensus       195 -~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          195 -ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             -GGTTCTTCSEEEEEEEEEEC
T ss_pred             -hhccCCCCCEEECcCCcccC
Confidence             35666666666666666653

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.75  E-value=2.2e-19  Score=193.79  Aligned_cols=141  Identities=20%  Similarity=0.097  Sum_probs=109.0

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc------------------cccchHHHHHHHHhhcCCCceeEEeeE
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI------------------TTSSFWPDVSQFGKLIMHPNIVRLHGV  749 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~------------------~~~~~~~e~~~~~~~~~H~niv~l~g~  749 (966)
                      ...+|+|++|.||+|+. .+|..||+|.+......                  ....+.+|+..+.+ ++  | +++.++
T Consensus        95 ~~~iG~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~-l~--~-~~v~~~  169 (282)
T 1zar_A           95 GKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQK-LQ--G-LAVPKV  169 (282)
T ss_dssp             EEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHH-TT--T-SSSCCE
T ss_pred             cCEeccCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHh-cc--C-CCcCeE
Confidence            35678999999999998 88999999998532211                  12346788888877 45  5 666665


Q ss_pred             EecCCeeEEEEEccCCCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccc
Q 002105          750 CRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGL  829 (966)
Q Consensus       750 ~~~~~~~~lv~Ey~~~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~  829 (966)
                      +.. +..|+|||||+||+|.+ +.   ......++.|+++||+|||   +.+|+||||||+|||++   ...+++.|||+
T Consensus       170 ~~~-~~~~lvmE~~~g~~L~~-l~---~~~~~~i~~qi~~~l~~lH---~~giiHrDlkp~NILl~---~~~vkl~DFG~  238 (282)
T 1zar_A          170 YAW-EGNAVLMELIDAKELYR-VR---VENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVS---EEGIWIIDFPQ  238 (282)
T ss_dssp             EEE-ETTEEEEECCCCEEGGG-CC---CSCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEE---TTEEEECCCTT
T ss_pred             Eec-cceEEEEEecCCCcHHH-cc---hhhHHHHHHHHHHHHHHHH---HCCCEeCCCCHHHEEEE---CCcEEEEECCC
Confidence            543 55699999999999988 42   2345579999999999999   55999999999999999   35689999998


Q ss_pred             ceecCCCCcCCcccccccccCC
Q 002105          830 AYCTDSKSINSSAYVAPETKES  851 (966)
Q Consensus       830 ~~~~~~~~~~~~~y~aPE~~~~  851 (966)
                      +..       +..|+|||++..
T Consensus       239 a~~-------~~~~~a~e~l~r  253 (282)
T 1zar_A          239 SVE-------VGEEGWREILER  253 (282)
T ss_dssp             CEE-------TTSTTHHHHHHH
T ss_pred             CeE-------CCCCCHHHHHHH
Confidence            853       456899998743

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.6e-17  Score=172.62  Aligned_cols=132  Identities=22%  Similarity=0.281  Sum_probs=62.8

Q ss_pred             CCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEcc
Q 002105          133 RLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLG  212 (966)
Q Consensus       133 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  212 (966)
                      +|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|+++...+..|..+++|++|+|+
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  112 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN  112 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence            34444444444444444445555555555555555554444445555555555555554443333334444444444444


Q ss_pred             CCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEecccccc
Q 002105          213 YNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKL  264 (966)
Q Consensus       213 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l  264 (966)
                      +|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+
T Consensus       113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            4444444444444444444444444444444444444444444444444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=2e-17  Score=171.86  Aligned_cols=153  Identities=25%  Similarity=0.277  Sum_probs=127.1

Q ss_pred             cEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCC
Q 002105          135 EILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYN  214 (966)
Q Consensus       135 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N  214 (966)
                      +.+++++|.++ .+|..+.  ++|++|+|++|.+.+..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            57888888887 4666554  68999999999998877778889999999999999998888888888899999999999


Q ss_pred             CCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcc
Q 002105          215 NLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSG  290 (966)
Q Consensus       215 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  290 (966)
                      .++...+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|.+..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            8886555667888888888888888888778888888888888888888887777778888888888888887753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=9.6e-18  Score=188.34  Aligned_cols=177  Identities=25%  Similarity=0.246  Sum_probs=134.7

Q ss_pred             CcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCC-CCCCCCEEEccCCCCcccCCcccccCCcceEEEcc
Q 002105          134 LEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSIS-NITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLG  212 (966)
Q Consensus       134 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  212 (966)
                      -+++++++|.++. +|..+.  +.++.|+|++|.+++..+..+. ++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus        20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            3678888888874 666554  4588999999999887777777 88999999999999988777888888888888888


Q ss_pred             CCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhh---hcCCCCCEEEccCCcCc
Q 002105          213 YNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSI---LGLKSLVSFDLSDNYLS  289 (966)
Q Consensus       213 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~N~l~  289 (966)
                      +|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|   ..+++|+.|+|++|.++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            888887667778888888888888888887778888888888888888888876444444   45777777777777777


Q ss_pred             ccCchhhcCCCCC--ceecccCCCCC
Q 002105          290 GEIPEEVIQLQNL--EILHLFSNNFT  313 (966)
Q Consensus       290 ~~~p~~~~~l~~L--~~L~L~~N~l~  313 (966)
                      +..+..+..++.+  +.|+|++|.+.
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccCHHHhhhccHhhcceEEecCCCcc
Confidence            5555555555542  45555555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=4.4e-17  Score=170.38  Aligned_cols=134  Identities=31%  Similarity=0.379  Sum_probs=83.6

Q ss_pred             CCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEc
Q 002105          132 SRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYL  211 (966)
Q Consensus       132 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  211 (966)
                      ++|++|+|++|.+++..|..|..+++|++|+|++|.+....+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            56666666666666666666777777777777777765544455666666666666666666555555566666666666


Q ss_pred             cCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCC
Q 002105          212 GYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTG  266 (966)
Q Consensus       212 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~  266 (966)
                      ++|.++ .+|..+..+++|++|+|++|++++..+..|..+++|++|++++|.+..
T Consensus       120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            666665 455555666666666666666655444455555556666665555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=2.5e-20  Score=220.76  Aligned_cols=202  Identities=21%  Similarity=0.162  Sum_probs=100.7

Q ss_pred             CCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCce
Q 002105          321 ASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRR  400 (966)
Q Consensus       321 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~  400 (966)
                      ..+++|+.|+|++|+++ .+|..++.+++|+.|++++|......|..           +..+.+.+.+|..+..+++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhccc
Confidence            45677777777777775 56777777777777777655321111100           0011122334444555555555


Q ss_pred             ee-ccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCccCCCCcCcccccccccccccc
Q 002105          401 VR-LQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRF  479 (966)
Q Consensus       401 L~-L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~Ls~N~l  479 (966)
                      |+ ++.|.+           ..|..+.+++|.++...+      ..|+.|+|++|.|++ +|.+..+++|+.|+|++|.|
T Consensus       414 L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l  475 (567)
T 1dce_A          414 VDPMRAAYL-----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRL  475 (567)
T ss_dssp             HCGGGHHHH-----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCC
T ss_pred             Ccchhhccc-----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcCccccccCcEeecCcccc
Confidence            55 444432           123334444444432211      135555555555554 23333444555555555555


Q ss_pred             cccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceecccc-CccCCCCCCCcEEeCCCCcCcccC
Q 002105          480 SGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHI-PASLSEMPVLGQLDLSENQLSGKI  555 (966)
Q Consensus       480 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~LdLs~N~l~g~~  555 (966)
                      + .+|..|+.+++|+.|+|++|++++ +| .++.+++|+.|+|++|+|++.+ |..++.+++|+.|+|++|++++.+
T Consensus       476 ~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          476 R-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             C-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             c-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            4 444455555555555555555554 34 4555555555555555555444 555555555555555555555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=2.7e-18  Score=209.84  Aligned_cols=196  Identities=23%  Similarity=0.262  Sum_probs=125.2

Q ss_pred             CCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccC
Q 002105          110 NSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLAS  189 (966)
Q Consensus       110 ~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  189 (966)
                      +.++.|+|++|.+...    ....|+.++|+.|.|.+              ++++.|.+. ..|..+..+++|+.|+|++
T Consensus       173 ~~~~~l~L~~n~~~~~----~~~~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~  233 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA----NQALLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDLSN  233 (727)
T ss_dssp             --------------------------------------------------------------------CCCCCCEEECTT
T ss_pred             CccceEEeeCCCCCcc----hhhHhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEECCC
Confidence            4466667766666541    12345666677666553              345556655 5678899999999999999


Q ss_pred             CCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCC
Q 002105          190 NQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIP  269 (966)
Q Consensus       190 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  269 (966)
                      |.+. .+|..++.+++|++|+|++|.++ .+|..|++|++|++|+|++|.|+ .+|..|++|++|++|+|++|.++ .+|
T Consensus       234 n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp  309 (727)
T 4b8c_D          234 LQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLP  309 (727)
T ss_dssp             SCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCC
T ss_pred             CCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccC
Confidence            9998 68888889999999999999999 89999999999999999999999 78999999999999999999997 678


Q ss_pred             hhhhcCCCCCEEEccCCcCcccCchhhcCCCC-CceecccCCCCCCCCCCCCCCCCCccEEEccCC
Q 002105          270 KSILGLKSLVSFDLSDNYLSGEIPEEVIQLQN-LEILHLFSNNFTGKIPSSLASMPKLQVLQLWSN  334 (966)
Q Consensus       270 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  334 (966)
                      ..|+++++|++|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|..      |+.|+++.|
T Consensus       310 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n  369 (727)
T 4b8c_D          310 WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD  369 (727)
T ss_dssp             SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred             hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence            88999999999999999999999888765432 335789999999888864      445666666

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=2e-17  Score=168.66  Aligned_cols=154  Identities=18%  Similarity=0.317  Sum_probs=80.9

Q ss_pred             cCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEE
Q 002105           82 FHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVL  161 (966)
Q Consensus        82 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  161 (966)
                      ..+++|++|++++|.+. .+| . +..+++|++|++++|.++...                        .+..+++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~~------------------------~l~~l~~L~~L   93 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNYN------------------------PISGLSNLERL   93 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCCG------------------------GGTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcch------------------------hhhcCCCCCEE
Confidence            34455666666666665 444 2 333455555555555444332                        44455555555


Q ss_pred             EccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeeccccc
Q 002105          162 DLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLT  241 (966)
Q Consensus       162 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  241 (966)
                      ++++|.+.+..|..++.+++|++|++++|++++..|..++.+++|++|++++|.+.+.+| .+..+++|++|++++|.++
T Consensus        94 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A           94 RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             EEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred             EeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence            555555554445555555555555555555555455555555555555555555222333 4555666666666666665


Q ss_pred             ccCCcCCCCCCccceEeccccccC
Q 002105          242 GQIPPSFGNLSNLRYLFLYQNKLT  265 (966)
Q Consensus       242 ~~~p~~~~~l~~L~~L~L~~n~l~  265 (966)
                      + ++ .+..+++|++|++++|++.
T Consensus       173 ~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          173 D-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             C-CT-TGGGCSSCCEEEECBC---
T ss_pred             C-hH-HhccCCCCCEEEeeCcccC
Confidence            4 22 4556666666666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=9.7e-18  Score=179.27  Aligned_cols=167  Identities=22%  Similarity=0.276  Sum_probs=79.0

Q ss_pred             CCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccC
Q 002105           86 HVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGG  165 (966)
Q Consensus        86 ~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  165 (966)
                      ++..+++++|.+. .++  .+..+++|++|++++|.++....+..+++|++|+|++|++++..+  +..+++|++|+|++
T Consensus        20 ~l~~l~l~~~~i~-~~~--~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           20 NAVKQNLGKQSVT-DLV--SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHTCSCTT-SEE--CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHHhcCCCcc-ccc--chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            3444445555444 222  123334555555555554432233444555555555555543322  55555555555555


Q ss_pred             CCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCC
Q 002105          166 NVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIP  245 (966)
Q Consensus       166 N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  245 (966)
                      |.+++. |. +.. ++|++|++++|++++.  +.+..+++|++|++++|.+++. + .+..+++|++|++++|++++.  
T Consensus        95 N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--  165 (263)
T 1xeu_A           95 NRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--  165 (263)
T ss_dssp             SCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred             CccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence            555432 21 111 4555555555555432  2345555555555555555432 2 345555555555555555543  


Q ss_pred             cCCCCCCccceEeccccccCC
Q 002105          246 PSFGNLSNLRYLFLYQNKLTG  266 (966)
Q Consensus       246 ~~~~~l~~L~~L~L~~n~l~~  266 (966)
                      ..+..+++|++|++++|+++.
T Consensus       166 ~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          166 GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             TTSTTCCCCCEEEEEEEEEEC
T ss_pred             HHhccCCCCCEEeCCCCcccC
Confidence            345555555555555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=2.9e-19  Score=211.70  Aligned_cols=204  Identities=18%  Similarity=0.106  Sum_probs=123.4

Q ss_pred             cCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCce
Q 002105          225 GDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEI  304 (966)
Q Consensus       225 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  304 (966)
                      ..+++|+.|+|++|+++ .+|..++++++|+.|++++|......|..+           ..+.+.+.+|..+..+++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhccc
Confidence            34555666666666665 456666666666666665443110011000           011244566677777777777


Q ss_pred             ec-ccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCC
Q 002105          305 LH-LFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNS  383 (966)
Q Consensus       305 L~-L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~  383 (966)
                      |+ ++.|.+           .+|+.+.+++|.++...+      ..|+.|+|++|.|++ +|. +..+++|+.|++++|+
T Consensus       414 L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~  474 (567)
T 1dce_A          414 VDPMRAAYL-----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR  474 (567)
T ss_dssp             HCGGGHHHH-----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC
T ss_pred             Ccchhhccc-----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccc
Confidence            77 555543           345555666666654222      136777777777775 454 6666677777777777


Q ss_pred             CCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCcc-CcchhccCCCcEecCCCCcCCccCCC
Q 002105          384 LEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRI-GEQKWEMTSLQMLNLAGNNFSGKLPD  462 (966)
Q Consensus       384 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~  462 (966)
                      ++ .+|..+..+++|+.|+|++|+|++ +| .+..+++|++|+|++|++++.. |..+..+++|+.|+|++|.+++.+|.
T Consensus       475 l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          475 LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            66 566677777777777777777776 34 6677777777777777777665 66666677777777777766655443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=4.3e-17  Score=166.27  Aligned_cols=156  Identities=17%  Similarity=0.240  Sum_probs=134.3

Q ss_pred             CCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcc
Q 002105          127 PIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNL  206 (966)
Q Consensus       127 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  206 (966)
                      ..+.+++|++|++++|.++ .+| .+..+++|++|++++|.+.  .+..+..+++|++|++++|++++..|..++.+++|
T Consensus        39 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           39 TEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             BHHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             ChhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            3356678888888888887 456 6889999999999999664  33478999999999999999998889999999999


Q ss_pred             eEEEccCCCCCCCCCcCccCCCCCCEEEeeccc-ccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccC
Q 002105          207 KWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNN-LTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSD  285 (966)
Q Consensus       207 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  285 (966)
                      ++|++++|.+++..|..++.+++|++|++++|. ++ .+| .+..+++|++|++++|++++ ++ .+..+++|++|++++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence            999999999998888899999999999999998 55 455 68999999999999999986 34 789999999999999


Q ss_pred             CcCcc
Q 002105          286 NYLSG  290 (966)
Q Consensus       286 N~l~~  290 (966)
                      |.+.+
T Consensus       191 N~i~~  195 (197)
T 4ezg_A          191 QTIGG  195 (197)
T ss_dssp             C----
T ss_pred             cccCC
Confidence            99864

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=9.4e-17  Score=171.60  Aligned_cols=167  Identities=22%  Similarity=0.297  Sum_probs=143.0

Q ss_pred             EEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCC
Q 002105           63 VNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNN  142 (966)
Q Consensus        63 v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N  142 (966)
                      ++.++++.+.++...  .+..+++|++|++++|++. .+|  .+..+++|++|+|++|++++..++..+++|++|+|++|
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence            445667777777544  5788999999999999998 677  35667999999999999998767899999999999999


Q ss_pred             CCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCc
Q 002105          143 MLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPK  222 (966)
Q Consensus       143 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~  222 (966)
                      ++++ +|.. .. ++|++|+|++|.+++. + .+.++++|+.|++++|++++. + .++.+++|++|++++|.+++.  .
T Consensus        96 ~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~  166 (263)
T 1xeu_A           96 RLKN-LNGI-PS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--G  166 (263)
T ss_dssp             CCSC-CTTC-CC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred             ccCC-cCcc-cc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--H
Confidence            9986 4443 33 9999999999999864 3 589999999999999999874 3 689999999999999999876  6


Q ss_pred             CccCCCCCCEEEeeccccccc
Q 002105          223 EIGDLTSLNHLDLVYNNLTGQ  243 (966)
Q Consensus       223 ~l~~l~~L~~L~Ls~N~l~~~  243 (966)
                      .+..+++|++|++++|.+.+.
T Consensus       167 ~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          167 GLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TSTTCCCCCEEEEEEEEEECC
T ss_pred             HhccCCCCCEEeCCCCcccCC
Confidence            799999999999999999865

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=5.6e-17  Score=164.59  Aligned_cols=132  Identities=23%  Similarity=0.384  Sum_probs=97.0

Q ss_pred             cEecCCCCcCCccCCC-CcCcccccccccccccccccCCC-cccCcCCCCEEEccCCccCCCChhhccccccccccccCC
Q 002105          447 QMLNLAGNNFSGKLPD-SFGSDQLENLDLSENRFSGTIPR-SFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSN  524 (966)
Q Consensus       447 ~~L~Ls~N~l~~~~p~-~~~~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  524 (966)
                      +.+++++|.++. +|. ++  .+|++|++++|++++..+. .|..+++|+.|+|++|++++..|..|..+++|++|+|++
T Consensus        11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            445555555542 333 22  2567777777777665554 477788888888888888877788888888888888888


Q ss_pred             ceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCcccccCCC
Q 002105          525 NQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPS  581 (966)
Q Consensus       525 N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~ip~  581 (966)
                      |+|++..|..|..+++|+.|+|++|++++.+|..+..+++|++|++++|+++|.++.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            888877777788888888888888888888888888888888888888888877663

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.63  E-value=1.1e-15  Score=154.93  Aligned_cols=87  Identities=25%  Similarity=0.335  Sum_probs=39.9

Q ss_pred             CCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEE
Q 002105          131 LSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIY  210 (966)
Q Consensus       131 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  210 (966)
                      +++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..+..+++|++|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             ccCCCCC
Q 002105          211 LGYNNLS  217 (966)
Q Consensus       211 L~~N~l~  217 (966)
                      |++|.++
T Consensus       133 L~~N~l~  139 (192)
T 1w8a_A          133 LASNPFN  139 (192)
T ss_dssp             CTTCCBC
T ss_pred             eCCCCcc
Confidence            4444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=7.6e-16  Score=170.53  Aligned_cols=280  Identities=11%  Similarity=0.062  Sum_probs=144.4

Q ss_pred             CCCCCEEEcCCCCCccccChh---hhhc-CCCCcEEECCCCCCCC-CCCCCCCCCCcEEeCCCCCCCCcCCCCcCC----
Q 002105           84 LPHVESINLSSNQLSGEIPSD---IFSS-SNSLRFLNLSNNNFTG-PVPIGSLSRLEILDLSNNMLSGKIPEEIGS----  154 (966)
Q Consensus        84 l~~L~~L~Ls~N~l~g~ip~~---~~~~-l~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~----  154 (966)
                      +++++.|+++++     +...   .+.. +++|++|||++|++.. ..+.+.++.++.+++..|.+   .+..|.+    
T Consensus        24 ~~~l~~L~l~g~-----i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGK-----LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFV---PAYAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEE-----ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEE---CTTTTEEEETT
T ss_pred             hCceeEEEEecc-----ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccccc---CHHHhcccccc
Confidence            667888888753     3221   1222 5778888888888772 11123333345555555532   2345555    


Q ss_pred             ----CCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCC----CCCCCCcCccC
Q 002105          155 ----FSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNN----LSGEIPKEIGD  226 (966)
Q Consensus       155 ----l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~----l~~~~p~~l~~  226 (966)
                          +++|+.|+|.. .++..-+..|.++++|+.++++.|.+....+..|..+.++..+.+..+.    ........|.+
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence                77777777777 5665555667777777777777777666666666666666655554421    11122233444


Q ss_pred             CCCCC-EEEeecccccccCCcC----CCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhh-cCCC
Q 002105          227 LTSLN-HLDLVYNNLTGQIPPS----FGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEV-IQLQ  300 (966)
Q Consensus       227 l~~L~-~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~  300 (966)
                      +..|+ .+++....   .++..    -....+++.+.+.++                        -.. .....+ ..++
T Consensus       175 ~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~------------------------l~~-~~~~~l~~~~~  226 (329)
T 3sb4_A          175 GEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGK------------------------LDN-ADFKLIRDYMP  226 (329)
T ss_dssp             SCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEEC------------------------CCH-HHHHHHHHHCT
T ss_pred             ccccceeEEecCCC---cHHHHHhhcccCccccceEEEeee------------------------ecH-HHHHHHHHhcC
Confidence            44444 33332211   11110    011223333333322                        111 000111 1244


Q ss_pred             CCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCc-EEEccCCcccccCCCCccCCCCccEEEc
Q 002105          301 NLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLT-VIDLSTNFLTGKIPETLCDSGSLFKLIL  379 (966)
Q Consensus       301 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~-~L~Ls~N~l~~~~p~~~~~~~~L~~L~l  379 (966)
                      +|+.++|++|+++...+..|.++++|+.++|.+| ++...+..|..+.+|+ .+++.+ .++...+..|..+.+|+.+++
T Consensus       227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA  304 (329)
T ss_dssp             TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred             CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence            5555555555554444445555555555555554 4434444555555555 555555 444444555666666666666


Q ss_pred             cCCCCCCCCCCccccCccCceee
Q 002105          380 FSNSLEGKIPNSLSTCKSLRRVR  402 (966)
Q Consensus       380 ~~N~l~~~~p~~~~~l~~L~~L~  402 (966)
                      ++|+++...+.+|.+|++|+.++
T Consensus       305 ~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          305 TGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CCCccCccchhhhcCCcchhhhc
Confidence            66666655566677777777665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=7.2e-16  Score=170.75  Aligned_cols=101  Identities=16%  Similarity=0.185  Sum_probs=57.7

Q ss_pred             ccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhcccccccc-ccccCCceeccccCccCCCCCCCcEEe
Q 002105          467 DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLV-SLDLSNNQLSGHIPASLSEMPVLGQLD  545 (966)
Q Consensus       467 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~Ld  545 (966)
                      ++|+.++|++|+++...+..|.++.+|+.|+|++| +....+.+|.+|++|+ .+++++ .++...+..|.++++|+.++
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence            34555555555555444455555666666666555 4444455566666666 666655 45544455666666666666


Q ss_pred             CCCCcCcccCCcccccCCCCCeee
Q 002105          546 LSENQLSGKIPQTLGRVASLVQVN  569 (966)
Q Consensus       546 Ls~N~l~g~~p~~l~~l~~L~~l~  569 (966)
                      +++|+++..-+..|.++++|+.++
T Consensus       304 l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          304 ATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             eCCCccCccchhhhcCCcchhhhc
Confidence            666666655555666666666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=3.1e-15  Score=148.22  Aligned_cols=135  Identities=24%  Similarity=0.286  Sum_probs=86.9

Q ss_pred             CCCCCCcEEeCCCCCCC-CcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcce
Q 002105          129 GSLSRLEILDLSNNMLS-GKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLK  207 (966)
Q Consensus       129 ~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  207 (966)
                      ...++|++|+|++|.++ +.+|..+..+++|++|+|++|.+.+.  ..+..+++|++|++++|++++.+|..+..+++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            33466777777777776 56777777777777777777777654  5666777777777777777666666666666777


Q ss_pred             EEEccCCCCCCCC-CcCccCCCCCCEEEeecccccccCC---cCCCCCCccceEeccccccC
Q 002105          208 WIYLGYNNLSGEI-PKEIGDLTSLNHLDLVYNNLTGQIP---PSFGNLSNLRYLFLYQNKLT  265 (966)
Q Consensus       208 ~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~n~l~  265 (966)
                      +|++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            7777776665421 1456666666666666666654333   24555666666666665554

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.58  E-value=1.8e-15  Score=161.18  Aligned_cols=136  Identities=11%  Similarity=0.018  Sum_probs=100.1

Q ss_pred             ccccCCCCCccEEEEEEEecCCcE--EEEEEEeccCcc-c-----------------------ccchHHHHHHHHhhcCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQ--FVVKKIIDVNTI-T-----------------------TSSFWPDVSQFGKLIMH  740 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~--vavk~~~~~~~~-~-----------------------~~~~~~e~~~~~~~~~H  740 (966)
                      ....+|+|++|.||+|....+|..  ||||.+...... .                       ...+.+|+..+.+ ++|
T Consensus        51 i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~~  129 (258)
T 1zth_A           51 MGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLER-AKE  129 (258)
T ss_dssp             EEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHH-HHH
T ss_pred             hCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHH-HHh
Confidence            345578999999999998778988  999986432110 0                       0135677777777 577


Q ss_pred             Cce--eEEeeEEecCCeeEEEEEccCC-C----CHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEE
Q 002105          741 PNI--VRLHGVCRSEKAAYLVYEYIEG-K----ELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI  813 (966)
Q Consensus       741 ~ni--v~l~g~~~~~~~~~lv~Ey~~~-g----~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nil  813 (966)
                      ++|  ...+++    +..++||||+.+ |    +|.++....++.....++.|++.||+|||.  ..+||||||||+|||
T Consensus       130 ~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~~~~~~~~~i~~qi~~~l~~lH~--~~givHrDlkp~NIL  203 (258)
T 1zth_A          130 AGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQ--EAELVHADLSEYNIM  203 (258)
T ss_dssp             TTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGGGGGSCHHHHHHHHHHHHHHHHH--TSCEECSSCSTTSEE
T ss_pred             CCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhccChHHHHHHHHHHHHHHHHHHH--HCCEEeCCCCHHHEE
Confidence            653  334432    356899999952 4    787776555566778999999999999993  238999999999999


Q ss_pred             EcCCCCceEEEeccccceec
Q 002105          814 VDGKDEPHLRLSVPGLAYCT  833 (966)
Q Consensus       814 l~~~~~~~~~~~~~~~~~~~  833 (966)
                      ++.    .+++.|||++...
T Consensus       204 l~~----~~~liDFG~a~~~  219 (258)
T 1zth_A          204 YID----KVYFIDMGQAVTL  219 (258)
T ss_dssp             ESS----SEEECCCTTCEET
T ss_pred             EcC----cEEEEECcccccC
Confidence            986    6789999998643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=6.2e-15  Score=149.48  Aligned_cols=131  Identities=20%  Similarity=0.312  Sum_probs=108.8

Q ss_pred             cEecCCCCcCCccCCCCcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCce
Q 002105          447 QMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQ  526 (966)
Q Consensus       447 ~~L~Ls~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  526 (966)
                      +.+++++|.++. +|... ..+|++|+|++|.++ .+|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|+
T Consensus        13 ~~l~~~~~~l~~-ip~~~-~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGI-PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSS-CCSCC-CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCc-CCCCC-CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            355666666653 33311 146888888888887 667888999999999999999998888899999999999999999


Q ss_pred             eccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCcccccCC
Q 002105          527 LSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLP  580 (966)
Q Consensus       527 l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~ip  580 (966)
                      |++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|++.+...
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            998888899999999999999999998777789999999999999999987544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=6.2e-15  Score=147.39  Aligned_cols=133  Identities=20%  Similarity=0.266  Sum_probs=107.2

Q ss_pred             cEecCCCCcCCccCCCCcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCce
Q 002105          447 QMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQ  526 (966)
Q Consensus       447 ~~L~Ls~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  526 (966)
                      +.+++++|.++.......  ++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|+
T Consensus        10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            456666666654322222  568888888888887767778888999999999999987777778899999999999999


Q ss_pred             eccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCcccccCCC
Q 002105          527 LSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPS  581 (966)
Q Consensus       527 l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~ip~  581 (966)
                      +++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  142 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  142 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence            9987777788899999999999999977777778899999999999999887763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.57  E-value=9.9e-15  Score=144.52  Aligned_cols=131  Identities=22%  Similarity=0.213  Sum_probs=55.8

Q ss_pred             CCCCEEEccCCCCc-ccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEe
Q 002105          180 TSLQIFTLASNQLI-GSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLF  258 (966)
Q Consensus       180 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  258 (966)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+.++++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            33444444444443 33344444444444444444444432  3344444444444444444443444444444444444


Q ss_pred             ccccccCCCC-ChhhhcCCCCCEEEccCCcCcccCc---hhhcCCCCCceecccCCCC
Q 002105          259 LYQNKLTGSI-PKSILGLKSLVSFDLSDNYLSGEIP---EEVIQLQNLEILHLFSNNF  312 (966)
Q Consensus       259 L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~N~l  312 (966)
                      +++|++++.. +..+..+++|++|++++|.+++..+   ..+..+++|+.|++++|.+
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            4444444321 1334444444444444444443322   2344444444444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=2.6e-15  Score=145.53  Aligned_cols=126  Identities=23%  Similarity=0.255  Sum_probs=65.9

Q ss_pred             CCCcEEeCCCCCCC-CcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEE
Q 002105          132 SRLEILDLSNNMLS-GKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIY  210 (966)
Q Consensus       132 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  210 (966)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..++++++|++|++++|.+++.+|..++.+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45566666666665 45565666666666666666665543  4455555555555555555554555444555555555


Q ss_pred             ccCCCCCCC-CCcCccCCCCCCEEEeecccccccCC---cCCCCCCccceEec
Q 002105          211 LGYNNLSGE-IPKEIGDLTSLNHLDLVYNNLTGQIP---PSFGNLSNLRYLFL  259 (966)
Q Consensus       211 L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L  259 (966)
                      +++|.+++. .+..++.+++|++|++++|.+++..+   ..+..+++|++|++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            555555431 12344444444455544444443322   23444444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=3.7e-14  Score=141.70  Aligned_cols=109  Identities=25%  Similarity=0.189  Sum_probs=46.1

Q ss_pred             CCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEc
Q 002105          132 SRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYL  211 (966)
Q Consensus       132 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  211 (966)
                      ++|++|++++|++++..+..|..+++|++|+|++|.+++..+..|.++++|++|++++|++++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            34444555555544443444445555555555555544333333444444444444444444333333333444444444


Q ss_pred             cCCCCCCCCCcCccCCCCCCEEEeecccc
Q 002105          212 GYNNLSGEIPKEIGDLTSLNHLDLVYNNL  240 (966)
Q Consensus       212 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  240 (966)
                      ++|.+++..+..+..+++|++|++++|.+
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            44444322222233333333333333333

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=5e-15  Score=143.48  Aligned_cols=126  Identities=22%  Similarity=0.228  Sum_probs=66.2

Q ss_pred             CCcCEEEccCCCCc-ccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEE
Q 002105          156 SGLKVLDLGGNVLV-GEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLD  234 (966)
Q Consensus       156 ~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  234 (966)
                      ++|+.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..++.+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            55666666666665 55565556666666666666665543  4455555555555555555544444444455555555


Q ss_pred             eeccccccc-CCcCCCCCCccceEeccccccCCCCC---hhhhcCCCCCEEEc
Q 002105          235 LVYNNLTGQ-IPPSFGNLSNLRYLFLYQNKLTGSIP---KSILGLKSLVSFDL  283 (966)
Q Consensus       235 Ls~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L  283 (966)
                      +++|.+++. .+..++++++|++|++++|++++..+   ..+..+++|+.|++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            555555432 22344444445555555554443333   23444444444444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=4.1e-14  Score=143.42  Aligned_cols=107  Identities=29%  Similarity=0.393  Sum_probs=49.6

Q ss_pred             CCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEcc
Q 002105          133 RLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLG  212 (966)
Q Consensus       133 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  212 (966)
                      +|++|+|++|.++ .+|..|..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|..+++|++|+|+
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            3444444444444 344455555555555555555554444444455555555555444444444444444444444444


Q ss_pred             CCCCCCCCCcCccCCCCCCEEEeecccc
Q 002105          213 YNNLSGEIPKEIGDLTSLNHLDLVYNNL  240 (966)
Q Consensus       213 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  240 (966)
                      +|.++...+..|..+++|++|++++|.+
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            4444433223344444444444444433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.50  E-value=1.1e-12  Score=148.31  Aligned_cols=264  Identities=15%  Similarity=0.121  Sum_probs=199.0

Q ss_pred             CCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCC--CCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEE
Q 002105           84 LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFT--GPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVL  161 (966)
Q Consensus        84 l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  161 (966)
                      ...++.+.+.+ .++ .|+..+|.. .+|+.++|..| ++  +...|.+ .+|+.+++.. .++..-+..|.++++|+.+
T Consensus       112 ~~~l~~i~ip~-~i~-~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPN-SVK-SIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCT-TCC-EECTTTTTT-CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             cCCccEEEECC-ccC-EehHhhccc-CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence            46677777764 355 688888887 47888888776 44  2334555 3688888886 6776667788889999999


Q ss_pred             EccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeeccccc
Q 002105          162 DLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLT  241 (966)
Q Consensus       162 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  241 (966)
                      +|+.|.+.......|. ..+|+.+.+..+ +...-...|.++++|+.+++..| ++..-..+|.+ .+|+.+.+. ++++
T Consensus       186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~  260 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT  260 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred             ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence            9988888755555555 588999998744 66666778888889999998875 44444556777 789999994 5566


Q ss_pred             ccCCcCCCCCCccceEeccccccC-----CCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCC
Q 002105          242 GQIPPSFGNLSNLRYLFLYQNKLT-----GSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKI  316 (966)
Q Consensus       242 ~~~p~~~~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  316 (966)
                      ..-+..|.++++|+.+++.+|.+.     ...+..|.++++|+.+++.+ .++..-...|.++.+|+.+.|..| ++...
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~  338 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN  338 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence            666778899999999999887764     34566788999999999984 476666778888999999999654 66556


Q ss_pred             CCCCCCCCCccEEEccCCcCcccCCccccCCC-CCcEEEccCCccc
Q 002105          317 PSSLASMPKLQVLQLWSNQFSGEIPSNLGKQN-NLTVIDLSTNFLT  361 (966)
Q Consensus       317 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~-~L~~L~Ls~N~l~  361 (966)
                      ...|.++ +|+.+++.+|.+....+..|..++ +++.|.+..+.+.
T Consensus       339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            7788888 999999999988766666777764 7888888777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=5.3e-16  Score=158.27  Aligned_cols=152  Identities=21%  Similarity=0.223  Sum_probs=107.6

Q ss_pred             CCcccEEcccCCCCCCccCc------chhccCCCcEecCCCCcCCccCCCCcCcccccccccccccccccCCCcccCcCC
Q 002105          419 LPLVYFLDISGNDLSGRIGE------QKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSE  492 (966)
Q Consensus       419 l~~L~~LdLs~N~l~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~  492 (966)
                      .+.++.++++.+.++|..|.      .+..+++|++|+|++|.+++ +|.+..+++|++|++++|.++ .+|..+..+++
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            34445555555555554444      56666666666676666665 444445567777777777776 56667777788


Q ss_pred             CCEEEccCCccCCCChhhccccccccccccCCceeccccC-ccCCCCCCCcEEeCCCCcCcccCCcc----------ccc
Q 002105          493 LMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIP-ASLSEMPVLGQLDLSENQLSGKIPQT----------LGR  561 (966)
Q Consensus       493 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~LdLs~N~l~g~~p~~----------l~~  561 (966)
                      |+.|++++|++++ +| .+..+++|+.|+|++|++++..+ ..+..+++|+.|++++|++++.+|..          +..
T Consensus        95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1ds9_A           95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence            8888888888876 45 67888888888998888885433 46788888999999999888877653          778


Q ss_pred             CCCCCeeeCcCCccc
Q 002105          562 VASLVQVNISHNHFH  576 (966)
Q Consensus       562 l~~L~~l~ls~N~l~  576 (966)
                      +++|+.||  +|.++
T Consensus       173 l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          173 LPNLKKLD--GMPVD  185 (198)
T ss_dssp             CSSCSEEC--CGGGT
T ss_pred             CCCcEEEC--CcccC
Confidence            88888887  55554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.47  E-value=2e-12  Score=146.38  Aligned_cols=240  Identities=13%  Similarity=0.122  Sum_probs=100.4

Q ss_pred             CcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEee
Q 002105          157 GLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLV  236 (966)
Q Consensus       157 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  236 (966)
                      +|+.+.+..| +...-...|.++ +|+.+.+.. .+...-+..|.++++|+.+++..|.++......|. .++|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            3444444433 332223334332 344444443 33333334444444444444444444422222333 3445555444


Q ss_pred             cccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCC---
Q 002105          237 YNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFT---  313 (966)
Q Consensus       237 ~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~---  313 (966)
                      .+ ++..-...|.++++|+.+++..| ++..-..+|.+ .+|+.+.+. +.++..-...|.++++|+.+++.+|.+.   
T Consensus       212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~  287 (401)
T 4fdw_A          212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDP  287 (401)
T ss_dssp             TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred             Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence            22 33333344444555555554432 22222233333 344444442 2233233334444444444444443332   


Q ss_pred             --CCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCc
Q 002105          314 --GKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNS  391 (966)
Q Consensus       314 --~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~  391 (966)
                        ...+..|.++++|+.+.|. +.++..-...|..+.+|+.++|..|                         ++..-+.+
T Consensus       288 ~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-------------------------l~~I~~~a  341 (401)
T 4fdw_A          288 EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-------------------------VTQINFSA  341 (401)
T ss_dssp             TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-------------------------CCEECTTS
T ss_pred             ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-------------------------ccEEcHHh
Confidence              1223344444444444444 2233233334444444444444322                         33333445


Q ss_pred             cccCccCceeeccccccCCcCChhhcCCC-cccEEcccCCC
Q 002105          392 LSTCKSLRRVRLQNNRLSGELSSEFTRLP-LVYFLDISGND  431 (966)
Q Consensus       392 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~LdLs~N~  431 (966)
                      |.+| +|+.+++.+|.+....+..|.+++ .+..|.+..+.
T Consensus       342 F~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          342 FNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             SSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             CCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            5555 555555555555544445555553 44555555444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=6.3e-14  Score=139.87  Aligned_cols=112  Identities=18%  Similarity=0.198  Sum_probs=64.8

Q ss_pred             ccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCc
Q 002105           79 SSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGL  158 (966)
Q Consensus        79 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  158 (966)
                      +.+.+.++|++|+|++|++. .+|. +....++|++|+|++|.+++...++.+++|++|+|++|.+++..+..+..+++|
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             HhcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            34566778888888888887 4543 444434677777777776654344556666666666666654433334555666


Q ss_pred             CEEEccCCCCcccCCc--CCCCCCCCCEEEccCCCCc
Q 002105          159 KVLDLGGNVLVGEIPL--SISNITSLQIFTLASNQLI  193 (966)
Q Consensus       159 ~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~n~l~  193 (966)
                      ++|+|++|.+. .+|.  .+..+++|++|++++|.+.
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence            66666666553 2332  3444445555555544443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=3.8e-14  Score=141.50  Aligned_cols=131  Identities=18%  Similarity=0.209  Sum_probs=88.2

Q ss_pred             ccCCCcEecCCCCcCCccCCCCcCcc-cccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhcccccccccc
Q 002105          442 EMTSLQMLNLAGNNFSGKLPDSFGSD-QLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSL  520 (966)
Q Consensus       442 ~l~~L~~L~Ls~N~l~~~~p~~~~~~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  520 (966)
                      ++.+|+.|++++|+++. +|.+.... +|++|++++|.+++.  ..|..+++|+.|+|++|++++..|..+..+++|++|
T Consensus        17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            34455555555555553 24433333 566666666666654  466777777778888887776555556777888888


Q ss_pred             ccCCceeccccCc--cCCCCCCCcEEeCCCCcCcccCCcc----cccCCCCCeeeCcCCcccc
Q 002105          521 DLSNNQLSGHIPA--SLSEMPVLGQLDLSENQLSGKIPQT----LGRVASLVQVNISHNHFHG  577 (966)
Q Consensus       521 ~Ls~N~l~~~~p~--~l~~l~~L~~LdLs~N~l~g~~p~~----l~~l~~L~~l~ls~N~l~g  577 (966)
                      +|++|+++ .+|.  .+..+++|+.|++++|+++ .+|..    +..++.|+.||+++|....
T Consensus        94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            88888875 4554  6777888888888888887 34553    7788888888888887653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=1.2e-15  Score=155.72  Aligned_cols=153  Identities=25%  Similarity=0.306  Sum_probs=119.0

Q ss_pred             cCccCceeeccccccCCcCCh------hhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCccCCCC-cCc
Q 002105          394 TCKSLRRVRLQNNRLSGELSS------EFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDS-FGS  466 (966)
Q Consensus       394 ~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~  466 (966)
                      ....++.++++.|.+++..|.      .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|.. ..+
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~   92 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA   92 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence            345666667777777776665      77788888888888888877 45 7777888888888888887 35553 345


Q ss_pred             ccccccccccccccccCCCcccCcCCCCEEEccCCccCCCCh-hhccccccccccccCCceeccccCcc----------C
Q 002105          467 DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIP-EELSSCKKLVSLDLSNNQLSGHIPAS----------L  535 (966)
Q Consensus       467 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l  535 (966)
                      ++|++|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+++.+|..          +
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence            788999999998886 34 68888999999999999885433 57889999999999999998887764          7


Q ss_pred             CCCCCCcEEeCCCCcCcc
Q 002105          536 SEMPVLGQLDLSENQLSG  553 (966)
Q Consensus       536 ~~l~~L~~LdLs~N~l~g  553 (966)
                      ..+++|+.||  +|.++.
T Consensus       171 ~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          171 KRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHCSSCSEEC--CGGGTT
T ss_pred             HhCCCcEEEC--CcccCH
Confidence            8889999987  676653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.42  E-value=3.9e-13  Score=133.20  Aligned_cols=108  Identities=22%  Similarity=0.300  Sum_probs=71.4

Q ss_pred             cccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCC
Q 002105          470 ENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSEN  549 (966)
Q Consensus       470 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N  549 (966)
                      +.+++++|.++. +|..+.  ++|+.|+|++|++++..|..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            445555555553 444332  56666777777776666666777777777777777777666666677777777777777


Q ss_pred             cCcccCCcccccCCCCCeeeCcCCcccccCC
Q 002105          550 QLSGKIPQTLGRVASLVQVNISHNHFHGSLP  580 (966)
Q Consensus       550 ~l~g~~p~~l~~l~~L~~l~ls~N~l~g~ip  580 (966)
                      +|++..|..|..+++|+.|++++|++++..+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            7776666667777777777777777766554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.42  E-value=8.3e-12  Score=141.66  Aligned_cols=217  Identities=14%  Similarity=0.049  Sum_probs=84.1

Q ss_pred             cccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCC
Q 002105          200 IGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLV  279 (966)
Q Consensus       200 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  279 (966)
                      |.++++|+.+.+..+. ...-...|.++.+|+.+++..| ++..-...|.++..|+.+.+..+...  +.........|+
T Consensus       158 F~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~  233 (394)
T 4fs7_A          158 FATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVK  233 (394)
T ss_dssp             TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCC
T ss_pred             hcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCc
Confidence            4444444444443322 1122233444444544444433 22223334444445554444433221  112222233444


Q ss_pred             EEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCc
Q 002105          280 SFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNF  359 (966)
Q Consensus       280 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~  359 (966)
                      .+.+..+ ++..-...+..+..|+.+.+..+... .....|..+..++.+.+..+.+.   ...|..+.+|+.+.+.++ 
T Consensus       234 ~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-  307 (394)
T 4fs7_A          234 NIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-  307 (394)
T ss_dssp             EEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-
T ss_pred             eEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-
Confidence            4444322 11122233344444444444433221 22333444444444444333211   123444444544444332 


Q ss_pred             ccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEccc
Q 002105          360 LTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDIS  428 (966)
Q Consensus       360 l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs  428 (966)
                      ++..-...|.++.+|+.+.+.++ ++..-..+|.+|++|+.+++..| +......+|.++++|+.+++.
T Consensus       308 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          308 VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            33222333444444444444321 33222334444444444444433 333333444444444444443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.39  E-value=1.7e-11  Score=139.11  Aligned_cols=332  Identities=14%  Similarity=0.073  Sum_probs=237.4

Q ss_pred             cccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCC--CCCCCCCCCCCcEEeCCCCCCCCcCCCC
Q 002105           74 SGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFT--GPVPIGSLSRLEILDLSNNMLSGKIPEE  151 (966)
Q Consensus        74 ~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  151 (966)
                      +.+-..+|.++.+|+.++|..+ ++ .|+..+|..+++|+.++|.++ ++  |...+..+.+|+.+.+..+ +...-...
T Consensus        60 tsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a  135 (394)
T 4fs7_A           60 VSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA  135 (394)
T ss_dssp             EEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             eEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence            3344567888999999999754 66 789999999999999999765 43  4555778888888877654 44445556


Q ss_pred             cCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCC
Q 002105          152 IGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLN  231 (966)
Q Consensus       152 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  231 (966)
                      |.+...+.........  ..-...|.++++|+.+.+..+. ...-...|.++.+|+.+.+..| +.......|.++..|+
T Consensus       136 F~~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~  211 (394)
T 4fs7_A          136 FKGCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE  211 (394)
T ss_dssp             TTTCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred             eecccccccccCcccc--ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence            6666554444433332  2334578899999999997653 3345567788889999988766 4434456788888999


Q ss_pred             EEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCC
Q 002105          232 HLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNN  311 (966)
Q Consensus       232 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  311 (966)
                      .+.+..+...  +...+...++|+.+.+..+ ++..-...+.++..|+.+.+..+... .....|..+..++.+....+.
T Consensus       212 ~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~  287 (394)
T 4fs7_A          212 NMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI  287 (394)
T ss_dssp             BCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE
T ss_pred             eeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee
Confidence            8887766433  3344445578888888644 33334556788899999998877543 455677788888888776654


Q ss_pred             CCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCc
Q 002105          312 FTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNS  391 (966)
Q Consensus       312 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~  391 (966)
                      +.   ...|..+.+|+.+.+..+ ++..-...|..+.+|+.++|.++ ++..-..+|.++.+|+.+.+..| ++..-..+
T Consensus       288 i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a  361 (394)
T 4fs7_A          288 VP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANA  361 (394)
T ss_dssp             EC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred             ec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHH
Confidence            32   346778899999998755 55555678889999999999754 66666778889999999999776 66666789


Q ss_pred             cccCccCceeeccccccCCcCChhhcCCCcccEE
Q 002105          392 LSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFL  425 (966)
Q Consensus       392 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  425 (966)
                      |.+|++|+.+++..+- . .+...|.++++|+.+
T Consensus       362 F~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          362 FQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             BTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred             hhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence            9999999999998652 2 224567676666643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.38  E-value=8.8e-13  Score=131.08  Aligned_cols=108  Identities=18%  Similarity=0.275  Sum_probs=75.3

Q ss_pred             cccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCC
Q 002105          470 ENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSEN  549 (966)
Q Consensus       470 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N  549 (966)
                      +.+++++|.++ .+|..+.  ++|+.|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            44555666554 4454443  56777777777777777777777777777777777777655556677777778888888


Q ss_pred             cCcccCCcccccCCCCCeeeCcCCcccccCC
Q 002105          550 QLSGKIPQTLGRVASLVQVNISHNHFHGSLP  580 (966)
Q Consensus       550 ~l~g~~p~~l~~l~~L~~l~ls~N~l~g~ip  580 (966)
                      +|++..+..|..+++|+.|++++|++.+..+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            7776666667777788888888887775543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.37  E-value=1.1e-12  Score=130.02  Aligned_cols=109  Identities=20%  Similarity=0.294  Sum_probs=91.8

Q ss_pred             CcEecCCCCcCCccCCCCcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCc
Q 002105          446 LQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNN  525 (966)
Q Consensus       446 L~~L~Ls~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  525 (966)
                      .+.+++++|.++. +|... ...|++|+|++|+|++..|..|..+++|+.|+|++|++++..|..|..+++|++|+|++|
T Consensus        11 ~~~l~~s~n~l~~-ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCc-cCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            4567777777765 33321 267888999999999888889999999999999999999888888899999999999999


Q ss_pred             eeccccCccCCCCCCCcEEeCCCCcCcccCC
Q 002105          526 QLSGHIPASLSEMPVLGQLDLSENQLSGKIP  556 (966)
Q Consensus       526 ~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p  556 (966)
                      +|++..|..|..+++|+.|+|++|+++...+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9998777889999999999999999987644

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.37  E-value=8.7e-14  Score=153.67  Aligned_cols=140  Identities=9%  Similarity=-0.043  Sum_probs=89.8

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc----c-cccch---------HHHHHHHHhhcCCCceeEEeeEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT----I-TTSSF---------WPDVSQFGKLIMHPNIVRLHGVC  750 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~----~-~~~~~---------~~e~~~~~~~~~H~niv~l~g~~  750 (966)
                      +.....+|.|++|.||+|+. .+|+.||||.+.....    . ...+|         ..+++..+. ..|+|+++++...
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d-~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~-kE~~nL~rL~~~g  174 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVAD-EKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAI-KEFAFMKALYEEG  174 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEEC-TTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHH-HHHHHHHHHHHTT
T ss_pred             EEecCEeeeCCceEEEEEEC-CCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHH-HHHHHHHHHHhcC
Confidence            45556689999999999997 7899999997642210    0 01111         112222222 2455555554322


Q ss_pred             ecC------CeeEEEEEccCCCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCc----
Q 002105          751 RSE------KAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEP----  820 (966)
Q Consensus       751 ~~~------~~~~lv~Ey~~~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~----  820 (966)
                      ..-      ...+|||||++|++|.++..   ......++.|++.||.|||.   .+||||||||.|||+++++.+    
T Consensus       175 v~vp~p~~~~~~~LVME~i~G~~L~~l~~---~~~~~~l~~qll~~l~~lH~---~gIVHrDLKp~NILl~~dgd~~d~~  248 (397)
T 4gyi_A          175 FPVPEPIAQSRHTIVMSLVDALPMRQVSS---VPDPASLYADLIALILRLAK---HGLIHGDFNEFNILIREEKDAEDPS  248 (397)
T ss_dssp             CSCCCEEEEETTEEEEECCSCEEGGGCCC---CSCHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEEEEECSSCTT
T ss_pred             CCCCeeeeccCceEEEEecCCccHhhhcc---cHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHEEEeCCCCccccc
Confidence            111      12369999999999876532   23345688999999999994   489999999999999865432    


Q ss_pred             ----eEEEecccccee
Q 002105          821 ----HLRLSVPGLAYC  832 (966)
Q Consensus       821 ----~~~~~~~~~~~~  832 (966)
                          .+.+.|++.+..
T Consensus       249 ~~~~~~~iID~~Q~V~  264 (397)
T 4gyi_A          249 SITLTPIIIXFPQMVS  264 (397)
T ss_dssp             SEEEEEEECCCTTCEE
T ss_pred             ccccceEEEEeCCccc
Confidence                234666665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.31  E-value=1.2e-11  Score=122.81  Aligned_cols=15  Identities=20%  Similarity=0.448  Sum_probs=7.6

Q ss_pred             CEEEcCCCCCccccCh
Q 002105           88 ESINLSSNQLSGEIPS  103 (966)
Q Consensus        88 ~~L~Ls~N~l~g~ip~  103 (966)
                      +.+++++|++. .+|.
T Consensus        15 ~~l~~~~n~l~-~iP~   29 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPA   29 (174)
T ss_dssp             SEEECCSSCCS-SCCS
T ss_pred             cEEEeCCCCCC-ccCC
Confidence            34555555554 4444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.18  E-value=3.1e-11  Score=134.38  Aligned_cols=106  Identities=22%  Similarity=0.234  Sum_probs=74.9

Q ss_pred             ccccccc-cccccCCCcccCcCCCCEEEccC-CccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCC
Q 002105          471 NLDLSEN-RFSGTIPRSFGRLSELMQLKISR-NKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSE  548 (966)
Q Consensus       471 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~  548 (966)
                      .++++++ .++. +|. +..+++|+.|+|++ |+|.+..|..|+++++|+.|+|++|+|++..|..|..+++|+.|||++
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3456665 5653 566 77777777777775 777777777777777777777777777777777777777777777777


Q ss_pred             CcCcccCCcccccCCCCCeeeCcCCcccccC
Q 002105          549 NQLSGKIPQTLGRVASLVQVNISHNHFHGSL  579 (966)
Q Consensus       549 N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~i  579 (966)
                      |+|++..|..+..++ |+.|++++|+|.+..
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHCSC  119 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccCCC
Confidence            777766655565555 777777777776553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.14  E-value=1.3e-12  Score=146.47  Aligned_cols=111  Identities=18%  Similarity=0.237  Sum_probs=66.9

Q ss_pred             ccccccccccccccccCCCcc-----cCcCCCCEEEccCCccCC----CChhhccccccccccccCCceeccc----cCc
Q 002105          467 DQLENLDLSENRFSGTIPRSF-----GRLSELMQLKISRNKLFG----DIPEELSSCKKLVSLDLSNNQLSGH----IPA  533 (966)
Q Consensus       467 ~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~  533 (966)
                      .+|+.|+|++|.++......+     ...++|+.|+|++|.++.    .++..+..+++|++|||++|.|++.    ++.
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~  205 (372)
T 3un9_A          126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA  205 (372)
T ss_dssp             HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred             HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence            345555555555543322222     234567777777777653    2334445667777777777777643    244


Q ss_pred             cCCCCCCCcEEeCCCCcCccc----CCcccccCCCCCeeeCcCCcccc
Q 002105          534 SLSEMPVLGQLDLSENQLSGK----IPQTLGRVASLVQVNISHNHFHG  577 (966)
Q Consensus       534 ~l~~l~~L~~LdLs~N~l~g~----~p~~l~~l~~L~~l~ls~N~l~g  577 (966)
                      .+...++|+.|||++|.|+..    ++..+...+.|+.||+++|.++.
T Consensus       206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            555666778888888877652    33445556778888888887753

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.14  E-value=5.3e-13  Score=149.57  Aligned_cols=166  Identities=18%  Similarity=0.188  Sum_probs=106.3

Q ss_pred             ccCceeeccccccCCcCChhhcC-----CCcccEEcccCCCCCCccCcch-hccCCCcEecCCCCcCCccCCCC------
Q 002105          396 KSLRRVRLQNNRLSGELSSEFTR-----LPLVYFLDISGNDLSGRIGEQK-WEMTSLQMLNLAGNNFSGKLPDS------  463 (966)
Q Consensus       396 ~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~LdLs~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~------  463 (966)
                      ++|+.|+|++|.++......+..     .++|+.|||++|.++......+ ..+.+|+.|+|++|.++......      
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            34556666666655433322221     2566777777776654322222 23456777777777775432221      


Q ss_pred             cCccccccccccccccccc----CCCcccCcCCCCEEEccCCccCCC----ChhhccccccccccccCCceeccc----c
Q 002105          464 FGSDQLENLDLSENRFSGT----IPRSFGRLSELMQLKISRNKLFGD----IPEELSSCKKLVSLDLSNNQLSGH----I  531 (966)
Q Consensus       464 ~~~~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~  531 (966)
                      .....|++|+|++|.++..    ++..+..+++|++|+|++|.+...    ++..+..+++|+.|+|++|.|++.    +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            1235688888888887642    334456778899999999988653    356677788999999999999763    3


Q ss_pred             CccCCCCCCCcEEeCCCCcCcccCCccccc
Q 002105          532 PASLSEMPVLGQLDLSENQLSGKIPQTLGR  561 (966)
Q Consensus       532 p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~  561 (966)
                      +..+...++|+.|||++|.|+..-...+..
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence            344556688999999999998655444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.06  E-value=3.9e-10  Score=125.48  Aligned_cols=103  Identities=19%  Similarity=0.165  Sum_probs=55.5

Q ss_pred             EEeCCCC-CCCCcCCCCcCCCCCcCEEEccC-CCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccC
Q 002105          136 ILDLSNN-MLSGKIPEEIGSFSGLKVLDLGG-NVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGY  213 (966)
Q Consensus       136 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  213 (966)
                      .++++++ .+++ +|. +..+++|++|+|++ |.+.+..|..|.++++|++|+|++|++++..|..|.+|++|++|+|++
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3456665 5553 555 66666666666664 666655555566666666666666665555555555555555555555


Q ss_pred             CCCCCCCCcCccCCCCCCEEEeeccccc
Q 002105          214 NNLSGEIPKEIGDLTSLNHLDLVYNNLT  241 (966)
Q Consensus       214 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  241 (966)
                      |.|++..+..|..++ |+.|+|.+|.+.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            555533333333332 444444444443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.06  E-value=9e-09  Score=116.53  Aligned_cols=110  Identities=12%  Similarity=0.110  Sum_probs=55.1

Q ss_pred             ccChhhhhcCC-CCcEEECCCCCCC--CCCCCCCCCCCcEEeCCCCC---CCCcCCCCcCCCCCcCEEEccCCCCcccCC
Q 002105          100 EIPSDIFSSSN-SLRFLNLSNNNFT--GPVPIGSLSRLEILDLSNNM---LSGKIPEEIGSFSGLKVLDLGGNVLVGEIP  173 (966)
Q Consensus       100 ~ip~~~~~~l~-~L~~L~Ls~N~l~--~~~~~~~l~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  173 (966)
                      .|+..+|..++ .|+.+.+..+ ++  |...|.++.+|+.+.++.|.   ++..-...|..+.+|+.+.+..+ +.....
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~  130 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS  130 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred             EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence            56777776653 4777777643 33  34445666666666665543   33333345555555555554433 222223


Q ss_pred             cCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEcc
Q 002105          174 LSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLG  212 (966)
Q Consensus       174 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  212 (966)
                      ..|.++.+|+.+.+..+ +.......|..+..|+.+.+.
T Consensus       131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~  168 (394)
T 4gt6_A          131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLP  168 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred             hhhhhhcccccccccce-eeeecccceeccccccccccc
Confidence            34455555555555432 222223334444445544443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.03  E-value=1.6e-08  Score=114.38  Aligned_cols=329  Identities=14%  Similarity=0.129  Sum_probs=167.0

Q ss_pred             cccccCCC-CCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCC---CC--CCCCCCCCCCCcEEeCCCCCCCCcCCCC
Q 002105           78 SSSIFHLP-HVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNN---FT--GPVPIGSLSRLEILDLSNNMLSGKIPEE  151 (966)
Q Consensus        78 ~~~~~~l~-~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~---l~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  151 (966)
                      ..+|.+.. .|+.+.+..+ ++ .|...+|..+++|+.+.++.|.   ++  |...|..+.+|+.+.+..+ ++..-...
T Consensus        56 ~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a  132 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA  132 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred             HhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence            44676664 5888888754 55 6888889888999999988764   33  3455677888888877654 55455567


Q ss_pred             cCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCC
Q 002105          152 IGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLN  231 (966)
Q Consensus       152 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  231 (966)
                      |..+.+|+.+.+..+ +.......|.++.+|+.+.+..+ +...-...|. ..+|+.+.+..+-.. ....+|.++.+++
T Consensus       133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~  208 (394)
T 4gt6_A          133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALS  208 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred             hhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccc
Confidence            888899999998754 33344567888899999888754 3322233333 356777766544321 3334566666666


Q ss_pred             EEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCC
Q 002105          232 HLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNN  311 (966)
Q Consensus       232 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  311 (966)
                      ......+.... +...+..-.......+          ..+.....+..+.+.. .++..-...|..+..|+.+.+..+.
T Consensus       209 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~  276 (394)
T 4gt6_A          209 TITSDSESYPA-IDNVLYEKSANGDYAL----------IRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSV  276 (394)
T ss_dssp             EEEECCSSSCB-SSSCEEEECTTSCEEE----------EECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTC
T ss_pred             eeccccccccc-ccceeecccccccccc----------cccccccccceEEcCC-cceEcccceeeecccccEEeccccc
Confidence            66555443321 1111100000000000          0001112222222211 1221222344444555555443322


Q ss_pred             CCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCc
Q 002105          312 FTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNS  391 (966)
Q Consensus       312 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~  391 (966)
                      .+ .....|.++++|+.+.+. +.++......|..+.+|+.++|..+                         ++..-..+
T Consensus       277 ~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-------------------------v~~I~~~a  329 (394)
T 4gt6_A          277 VS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-------------------------ITQILDDA  329 (394)
T ss_dssp             CE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-------------------------CCEECTTT
T ss_pred             ce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-------------------------ccEehHhH
Confidence            21 223344445555555543 2233222334444445555444332                         22233345


Q ss_pred             cccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcC
Q 002105          392 LSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNF  456 (966)
Q Consensus       392 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  456 (966)
                      |.+|.+|+.+.+..+ ++.....+|.++++|+.+++.+|....   ..+....+|+.+.+..|.+
T Consensus       330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            666666666666543 444455566666666666666654321   2344456676666665543

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.94  E-value=6.1e-09  Score=110.78  Aligned_cols=135  Identities=14%  Similarity=0.054  Sum_probs=99.7

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCHH
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELS  769 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L~  769 (966)
                      ..++++.+.||++..  .+..+++|............+.+|...+..+-.|..+.++++++...+..|+||||++|.+|.
T Consensus        21 ~~~g~s~~~v~~~~~--~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~   98 (263)
T 3tm0_A           21 DTEGMSPAKVYKLVG--ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCS   98 (263)
T ss_dssp             CCSCCSSSEEEEEEC--SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEEHH
T ss_pred             eccCCCCCeEEEEEC--CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEecCCeehh
Confidence            345556677999874  467899998764322334567888877776435778889999999889999999999999998


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHhhc----------------------------------------------------
Q 002105          770 EVLRNLSWERRRKVAIGIAKALRFLHFH----------------------------------------------------  797 (966)
Q Consensus       770 ~~l~~l~~~~~~~i~~~ia~~l~yLH~~----------------------------------------------------  797 (966)
                      +.+.  +......++.+++++++.||..                                                    
T Consensus        99 ~~~~--~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  176 (263)
T 3tm0_A           99 EEYE--DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKT  176 (263)
T ss_dssp             HHCC--TTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHHHHHHHH
T ss_pred             hccC--CcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccccCCCHHHHHHHHHh
Confidence            7632  2233457889999999999971                                                    


Q ss_pred             ----CCCCeEeecCCCCcEEEcCCCCceEEEeccccc
Q 002105          798 ----CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA  830 (966)
Q Consensus       798 ----~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~  830 (966)
                          ..+.++|+|++|.||+++++  ..+.+.|++.+
T Consensus       177 ~~~~~~~~l~HgDl~~~Nil~~~~--~~~~lIDwe~a  211 (263)
T 3tm0_A          177 EKPEEELVFSHGDLGDSNIFVKDG--KVSGFIDLGRS  211 (263)
T ss_dssp             CCCCCCEEEECSSCCTTSEEEETT--EEEEECCCTTC
T ss_pred             cCCCCCceEECCCCCcCcEEEECC--cEEEEEEchhc
Confidence                01569999999999999753  23347777644

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.72  E-value=4e-08  Score=104.12  Aligned_cols=126  Identities=14%  Similarity=0.150  Sum_probs=89.9

Q ss_pred             CCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCc--eeEEeeEEecCCeeEEEEEccCCCCHHH
Q 002105          693 KKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPN--IVRLHGVCRSEKAAYLVYEYIEGKELSE  770 (966)
Q Consensus       693 ~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~n--iv~l~g~~~~~~~~~lv~Ey~~~g~L~~  770 (966)
                      +|..+.||++.. .+|..+++|.....   ....+..|...+..+ .+.+  +.+++++...++..++||||++|.++. 
T Consensus        30 gg~~~~v~~~~~-~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l-~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~-  103 (264)
T 1nd4_A           30 GCSDAAVFRLSA-QGRPVLFVKTDLSG---ALNELQDEAARLSWL-ATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL-  103 (264)
T ss_dssp             TTSSCEEEEEEC-TTSCCEEEEEECSC---TTSCHHHHHHHHHHH-HTTTCCBCCEEEEEECSSCEEEEEECCSSEETT-
T ss_pred             CCCCceEEEEec-CCCCeEEEEeCCcc---cchhhhHHHHHHHHH-HhCCCCCCeEEEeccCCCCCEEEEEecCCcccC-
Confidence            344578999875 66778999986432   235677788777664 4334  566899888888899999999999884 


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHhhcC----------------------------------------------------
Q 002105          771 VLRNLSWERRRKVAIGIAKALRFLHFHC----------------------------------------------------  798 (966)
Q Consensus       771 ~l~~l~~~~~~~i~~~ia~~l~yLH~~~----------------------------------------------------  798 (966)
                       ....   ....++.++++.++.||...                                                    
T Consensus       104 -~~~~---~~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  179 (264)
T 1nd4_A          104 -SSHL---APAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMP  179 (264)
T ss_dssp             -TSCC---CHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCC
T ss_pred             -cCcC---CHhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHHHHhcC
Confidence             2222   23467788888888888532                                                    


Q ss_pred             ---CCCeEeecCCCCcEEEcCCCCceEEEeccccc
Q 002105          799 ---SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA  830 (966)
Q Consensus       799 ---~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~  830 (966)
                         ...++|+|++|+||+++++  ..+++.|++.+
T Consensus       180 ~~~~~~l~HgDl~~~Nil~~~~--~~~~liD~~~a  212 (264)
T 1nd4_A          180 DGEDLVVTHGDACLPNIMVENG--RFSGFIDCGRL  212 (264)
T ss_dssp             SSCCEEEECSSCCGGGEEEETT--EEEEECCCTTC
T ss_pred             CCCCeEEECCCCCCCcEEEECC--cEEEEEcchhc
Confidence               1239999999999999853  23457888764

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.71  E-value=4e-08  Score=109.70  Aligned_cols=142  Identities=13%  Similarity=0.206  Sum_probs=101.5

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEe--ccCc-ccccchHHHHHHHHhhcC--CCceeEEeeEEecC---CeeEEE
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKII--DVNT-ITTSSFWPDVSQFGKLIM--HPNIVRLHGVCRSE---KAAYLV  759 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~--~~~~-~~~~~~~~e~~~~~~~~~--H~niv~l~g~~~~~---~~~~lv  759 (966)
                      +...++|.+..||++..  .+..+++|+..  .... .....+.+|...+.. +.  +..+.++++++.+.   +..|+|
T Consensus        43 ~~~l~~G~sn~~y~v~~--~~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~-L~~~~vpvP~~~~~~~~~~~~g~~~~v  119 (359)
T 3dxp_A           43 VEQFKGGQSNPTFKLVT--PGQTYVMRAKPGPKSKLLPSAHAIEREYRVMDA-LAGTDVPVAKMYALCEDESVIGRAFYI  119 (359)
T ss_dssp             EEECCC-CCSCEEEEEC--SSCEEEEECCCC----------CHHHHHHHHHH-HTTSSSCCCCEEEEECCTTTTSSCEEE
T ss_pred             EEEcCCcccceEEEEEE--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHH-hhcCCCCCCcEEEECCCCCccCCeEEE
Confidence            44557777788999875  34678888764  2221 223456677776665 44  45688999998876   458999


Q ss_pred             EEccCCCCHHH-HHHcCCHHHHHHHHHHHHHHHHHHhhcC----------------------------------------
Q 002105          760 YEYIEGKELSE-VLRNLSWERRRKVAIGIAKALRFLHFHC----------------------------------------  798 (966)
Q Consensus       760 ~Ey~~~g~L~~-~l~~l~~~~~~~i~~~ia~~l~yLH~~~----------------------------------------  798 (966)
                      |||++|..+.+ .+..++..++..++.+++++|+.||...                                        
T Consensus       120 me~v~G~~l~~~~~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (359)
T 3dxp_A          120 MEFVSGRVLWDQSLPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDS  199 (359)
T ss_dssp             EECCCCBCCCCTTCTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred             EEecCCeecCCCccccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHH
Confidence            99999988843 4456788889999999999999999631                                        


Q ss_pred             ---------------CCCeEeecCCCCcEEEcCCCCceEEEecccccee
Q 002105          799 ---------------SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC  832 (966)
Q Consensus       799 ---------------~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~  832 (966)
                                     .+.++|+|++|.||+++.+....+.+.||+.+..
T Consensus       200 ~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          200 LMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             HHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             HHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence                           2579999999999999875543457888887643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.68  E-value=1.8e-06  Score=97.01  Aligned_cols=130  Identities=13%  Similarity=0.065  Sum_probs=62.2

Q ss_pred             CCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccC
Q 002105          319 SLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSL  398 (966)
Q Consensus       319 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L  398 (966)
                      .+....+|+.+.+..+ +.......|..+..|+.+.+..+ ++..-...|..+.+|+.+.+..+ +.......|.+|.+|
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            3444455555555433 22223344555555555555443 33333344444555555554322 332333455555666


Q ss_pred             ceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCC
Q 002105          399 RRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLA  452 (966)
Q Consensus       399 ~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls  452 (966)
                      +.+.+.++.+......+|.++.+|+.++|..+ ++..-...|.++++|+.+.+.
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            66666555555555555555555555555433 333333344445555554443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.64  E-value=3e-06  Score=95.07  Aligned_cols=79  Identities=11%  Similarity=0.153  Sum_probs=40.2

Q ss_pred             ccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCC--CCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCc
Q 002105           81 IFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFT--GPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGL  158 (966)
Q Consensus        81 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  158 (966)
                      +..-.+|+.+.+.. .++ .|+..+|..+.+|+.++|..+ ++  |...+.++ +|+.+.+..+ ++..-...|.. .+|
T Consensus        42 ~~~~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L  115 (379)
T 4h09_A           42 YKDRDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL  115 (379)
T ss_dssp             GGGGGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred             cccccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence            44455677777653 344 577777777777777777543 33  23334443 3555544332 33222223332 245


Q ss_pred             CEEEccC
Q 002105          159 KVLDLGG  165 (966)
Q Consensus       159 ~~L~L~~  165 (966)
                      +.+.+..
T Consensus       116 ~~i~lp~  122 (379)
T 4h09_A          116 DDFEFPG  122 (379)
T ss_dssp             SEEECCT
T ss_pred             ccccCCC
Confidence            5555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.62  E-value=1.8e-10  Score=121.15  Aligned_cols=41  Identities=34%  Similarity=0.464  Sum_probs=21.6

Q ss_pred             CCCCCcEEeCCCCCCCC--cCCCCcCCCCCcCEEEccCCCCcc
Q 002105          130 SLSRLEILDLSNNMLSG--KIPEEIGSFSGLKVLDLGGNVLVG  170 (966)
Q Consensus       130 ~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~  170 (966)
                      ++++|++|+|++|+|++  .+|..+..+++|++|+|++|.+.+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~  210 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  210 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence            34555555555555554  233444455555555555555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.59  E-value=1.4e-08  Score=112.60  Aligned_cols=64  Identities=16%  Similarity=0.232  Sum_probs=29.4

Q ss_pred             CCCCCEEEccCCcCcccCchhhc---CCCCCceecccCCCCCCC----CCCCCCCCCCccEEEccCCcCcc
Q 002105          275 LKSLVSFDLSDNYLSGEIPEEVI---QLQNLEILHLFSNNFTGK----IPSSLASMPKLQVLQLWSNQFSG  338 (966)
Q Consensus       275 l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~  338 (966)
                      +++|++|+|++|.+....+..+.   .+++|+.|+|+.|.+++.    ++..+..+++|+.|+|++|.++.
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            34455555544444432222221   244555555555554431    22222345566666666666543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.57  E-value=1.5e-08  Score=112.29  Aligned_cols=138  Identities=20%  Similarity=0.195  Sum_probs=66.4

Q ss_pred             CCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccc--cCCcceEEEccC--CCCCCCC-----
Q 002105          150 EEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIG--QLRNLKWIYLGY--NNLSGEI-----  220 (966)
Q Consensus       150 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~--N~l~~~~-----  220 (966)
                      ..+..+++|+.|+|++|.-. .++. + .+++|+.|++..+.+.......+.  .+++|++|+|+.  |...+..     
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            34455677777777666211 1222 2 266677777766665433222332  466666666642  1111110     


Q ss_pred             CcCc--cCCCCCCEEEeecccccccCCcCC---CCCCccceEeccccccCCC----CChhhhcCCCCCEEEccCCcCcc
Q 002105          221 PKEI--GDLTSLNHLDLVYNNLTGQIPPSF---GNLSNLRYLFLYQNKLTGS----IPKSILGLKSLVSFDLSDNYLSG  290 (966)
Q Consensus       221 p~~l--~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~  290 (966)
                      ...+  ..+++|++|+|.+|.+....+..+   ..+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++.
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            0111  234566666666665543221111   2345566666666655432    12223345556666666665543

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.51  E-value=8.3e-08  Score=104.38  Aligned_cols=180  Identities=17%  Similarity=0.191  Sum_probs=113.3

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCc--eeEEeeEEecCC---eeEEEEEccCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPN--IVRLHGVCRSEK---AAYLVYEYIEG  765 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~n--iv~l~g~~~~~~---~~~lv~Ey~~~  765 (966)
                      .++|....||++.     ..+++|+-...  .....+.+|.+.+..+..|..  +.+.++++..++   ..|+||||++|
T Consensus        28 ~~~G~~n~v~~v~-----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G  100 (304)
T 3sg8_A           28 SGEGNDCIAYEIN-----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKG  100 (304)
T ss_dssp             EEECSSEEEEEST-----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCC
T ss_pred             cCCCCcceEEEEC-----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccCC
Confidence            4566777788753     45788874322  223456777776665323332  344555443333   45899999999


Q ss_pred             CCHHH-HHHcCCHHHHHHHHHHHHHHHHHHhhc-----------------------------------------------
Q 002105          766 KELSE-VLRNLSWERRRKVAIGIAKALRFLHFH-----------------------------------------------  797 (966)
Q Consensus       766 g~L~~-~l~~l~~~~~~~i~~~ia~~l~yLH~~-----------------------------------------------  797 (966)
                      .++.+ ....++..++..++.++++.++.||..                                               
T Consensus       101 ~~l~~~~~~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  180 (304)
T 3sg8_A          101 VPLTPLLLNNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDFYRDI  180 (304)
T ss_dssp             EECCHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             eECCccccccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHH
Confidence            99875 445688888999999999999999951                                               


Q ss_pred             --------CCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCCC--cCCccc---ccccccC------CC------
Q 002105          798 --------CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS--INSSAY---VAPETKE------SK------  852 (966)
Q Consensus       798 --------~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~~--~~~~~y---~aPE~~~------~~------  852 (966)
                              ..+.++|+|++|.||+++++....+.+.||+.+...+...  .....+   ..|+...      +.      
T Consensus       181 l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~~~~~~  260 (304)
T 3sg8_A          181 LENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDIPTV  260 (304)
T ss_dssp             HTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCSCHHHH
T ss_pred             HhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCCCcHHH
Confidence                    1246899999999999986423345678887765432110  000001   1222110      00      


Q ss_pred             --CCCCcchHHHHHHHHHHHHcCCCCC
Q 002105          853 --DITEKGDIYGFGLILIDLLTGKSPA  877 (966)
Q Consensus       853 --~~~~~~Dv~S~Gv~l~el~tg~~p~  877 (966)
                        ......+.|++|+++|++.+|..++
T Consensus       261 ~~r~~~~~~~~~l~~~~~~~~~g~~~~  287 (304)
T 3sg8_A          261 LEKYRMKEKYWSFEKIIYGKEYGYMDW  287 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence              0112258999999999999998774

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.35  E-value=4.2e-08  Score=103.14  Aligned_cols=101  Identities=27%  Similarity=0.386  Sum_probs=70.8

Q ss_pred             ccccc--ccccccccc---ccCCCcccCcCCCCEEEccCCccCC--CChhhccccccccccccCCceeccccCccCCCCC
Q 002105          467 DQLEN--LDLSENRFS---GTIPRSFGRLSELMQLKISRNKLFG--DIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMP  539 (966)
Q Consensus       467 ~~L~~--L~Ls~N~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  539 (966)
                      +.|..  ++++.|+..   +.++....++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.
T Consensus       141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~  218 (267)
T 3rw6_A          141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIK  218 (267)
T ss_dssp             HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGT
T ss_pred             cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcc
Confidence            34444  566777432   2222223567888999999999887  4567778888999999999988865  2333333


Q ss_pred             --CCcEEeCCCCcCcccCCc-------ccccCCCCCeee
Q 002105          540 --VLGQLDLSENQLSGKIPQ-------TLGRVASLVQVN  569 (966)
Q Consensus       540 --~L~~LdLs~N~l~g~~p~-------~l~~l~~L~~l~  569 (966)
                        +|+.|+|++|.+++.+|.       .+..+++|+.||
T Consensus       219 ~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          219 GLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             TSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             cCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence              888999999999887763       366778888776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.09  E-value=4.1e-07  Score=90.88  Aligned_cols=90  Identities=18%  Similarity=0.244  Sum_probs=59.0

Q ss_pred             ccCcCCCCEEEccCCccCCC----ChhhccccccccccccCCceeccc----cCccCCCCCCCcEEeC--CCCcCccc--
Q 002105          487 FGRLSELMQLKISRNKLFGD----IPEELSSCKKLVSLDLSNNQLSGH----IPASLSEMPVLGQLDL--SENQLSGK--  554 (966)
Q Consensus       487 ~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~LdL--s~N~l~g~--  554 (966)
                      +...++|++|+|++|++...    +...+...++|++|+|++|.|...    +...+...+.|+.|+|  ++|.++..  
T Consensus        61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~  140 (185)
T 1io0_A           61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  140 (185)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence            34445666777777766432    233445556777777777777653    3455666677888888  77888753  


Q ss_pred             --CCcccccCCCCCeeeCcCCccc
Q 002105          555 --IPQTLGRVASLVQVNISHNHFH  576 (966)
Q Consensus       555 --~p~~l~~l~~L~~l~ls~N~l~  576 (966)
                        +...+...+.|+.|++++|.+.
T Consensus       141 ~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          141 MEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCcCEEeccCCCCC
Confidence              3345556678888888888764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.99  E-value=6.3e-07  Score=89.48  Aligned_cols=40  Identities=15%  Similarity=0.187  Sum_probs=20.9

Q ss_pred             hhcCCCCcEEECCCC-CCCCC--C----CCCCCCCCcEEeCCCCCCC
Q 002105          106 FSSSNSLRFLNLSNN-NFTGP--V----PIGSLSRLEILDLSNNMLS  145 (966)
Q Consensus       106 ~~~l~~L~~L~Ls~N-~l~~~--~----~~~~l~~L~~L~Ls~N~l~  145 (966)
                      +...+.|++|+|++| .+...  .    .+...++|++|||++|.+.
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            344466777777766 66521  0    0133455555555555554

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=97.87  E-value=6.5e-05  Score=81.34  Aligned_cols=133  Identities=17%  Similarity=0.225  Sum_probs=84.4

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCC---ceeEEeeEEe-cCCeeEEEEEccCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHP---NIVRLHGVCR-SEKAAYLVYEYIEGK  766 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~---niv~l~g~~~-~~~~~~lv~Ey~~~g  766 (966)
                      .++|....||++     |..+++|.-.  .......+..|...+.. +.+.   .+.+.+.++. ..+..|+||||++|.
T Consensus        27 l~~G~~n~v~~v-----g~~~VlR~~~--~~~~~~~~~~E~~~L~~-L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~   98 (306)
T 3tdw_A           27 LGEGFRNYAILV-----NGDWVFRFPK--SQQGADELNKEIQLLPL-LVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQ   98 (306)
T ss_dssp             EEECSSEEEEEE-----TTTEEEEEES--SHHHHHHHHHHHHHHHH-HTTTCSSBCCCEEEEEECTTSCEEEEEECCCSE
T ss_pred             cCCCcceeEEEE-----CCEEEEEecC--CchHHHHHHHHHHHHHH-HHhcCCCCCCCeEeecccCCCceEEEEeccCCe
Confidence            344555568876     4567888632  11223456677776666 4432   3556666664 456689999999998


Q ss_pred             CHHHH-HHcCCHHHHHHHHHHHHHHHHHHhhc------------------------------------------------
Q 002105          767 ELSEV-LRNLSWERRRKVAIGIAKALRFLHFH------------------------------------------------  797 (966)
Q Consensus       767 ~L~~~-l~~l~~~~~~~i~~~ia~~l~yLH~~------------------------------------------------  797 (966)
                      .+.+. +..++..++..++.++++.|+.||..                                                
T Consensus        99 ~l~~~~~~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  178 (306)
T 3tdw_A           99 ILGEDGMAVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTLRFQS  178 (306)
T ss_dssp             ECHHHHHTTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred             ECchhhhhhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence            88763 34455556666666666666666632                                                


Q ss_pred             ---------CCCCeEeecCCCCcEEEcCC--CCceEEEeccccce
Q 002105          798 ---------CSPSVVAGDVSPGKVIVDGK--DEPHLRLSVPGLAY  831 (966)
Q Consensus       798 ---------~~~~iiHrDlk~~Nill~~~--~~~~~~~~~~~~~~  831 (966)
                               ..+.++|+|++|.||+++.+  ....+.+.|++.+.
T Consensus       179 ~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~  223 (306)
T 3tdw_A          179 YMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAA  223 (306)
T ss_dssp             HHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCE
T ss_pred             HHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcC
Confidence                     23467999999999999862  12223577776543

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=97.82  E-value=0.00011  Score=77.93  Aligned_cols=127  Identities=19%  Similarity=0.195  Sum_probs=85.8

Q ss_pred             EEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCHHHHHHcCCH
Q 002105          698 SSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSW  777 (966)
Q Consensus       698 ~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L~~~l~~l~~  777 (966)
                      .||+.....++..+++|+-...   ...++.+|...+..+-.+--+.++++++..++..|+||||++|.++.+..... .
T Consensus        40 ~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~~~~~~~~-~  115 (272)
T 4gkh_A           40 TIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEY-P  115 (272)
T ss_dssp             EEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEHHHHHHHC-G
T ss_pred             eEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccccccccCC-H
Confidence            5899887666778888875432   22345667666655423434678889999999999999999999887765432 2


Q ss_pred             HHHHHHHHHHHHHHHHHhhc-------------------------------------------------------CCCCe
Q 002105          778 ERRRKVAIGIAKALRFLHFH-------------------------------------------------------CSPSV  802 (966)
Q Consensus       778 ~~~~~i~~~ia~~l~yLH~~-------------------------------------------------------~~~~i  802 (966)
                      ..+..++.++++.|+-||..                                                       ..+.+
T Consensus       116 ~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l  195 (272)
T 4gkh_A          116 DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVV  195 (272)
T ss_dssp             GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHHHHTTCCCCCCEEE
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHHHHhcccccCCcEE
Confidence            23445666667777777631                                                       02238


Q ss_pred             EeecCCCCcEEEcCCCCceEEEeccccc
Q 002105          803 VAGDVSPGKVIVDGKDEPHLRLSVPGLA  830 (966)
Q Consensus       803 iHrDlk~~Nill~~~~~~~~~~~~~~~~  830 (966)
                      +|+|+.+.||+++++  ..+.+.|++.+
T Consensus       196 ~HGDl~~~Nil~~~~--~~~~viDwe~a  221 (272)
T 4gkh_A          196 THGDFSLDNLIFDEG--KLIGCIDVGRV  221 (272)
T ss_dssp             ECSCCCTTSEEEETT--EEEEECCCTTC
T ss_pred             EcCCCCCCeEEEECC--eEEEEEECccc
Confidence            999999999999853  22346666644

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.48  E-value=0.00025  Score=78.57  Aligned_cols=78  Identities=9%  Similarity=0.071  Sum_probs=48.6

Q ss_pred             CCCCccEEEEEEEe--c----CCcEEEEEEEeccC---cccccchHHHHHHHHhhcCC--CceeEEeeEEecC---CeeE
Q 002105          692 GKKGVSSSYKVRSL--A----NDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMH--PNIVRLHGVCRSE---KAAY  757 (966)
Q Consensus       692 g~~g~~~vy~~~~~--~----~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H--~niv~l~g~~~~~---~~~~  757 (966)
                      ++|....+|++...  .    ++..+++|.-....   ......+..|...+..+-.|  -.+.++++++.+.   +..|
T Consensus        30 ~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~g~~~  109 (357)
T 3ats_A           30 STGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVLGTPF  109 (357)
T ss_dssp             TTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTTSSCE
T ss_pred             CCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCccCCce
Confidence            55666779987752  0    25677887643322   11234567777666554333  3567788887665   4578


Q ss_pred             EEEEccCCCCHH
Q 002105          758 LVYEYIEGKELS  769 (966)
Q Consensus       758 lv~Ey~~~g~L~  769 (966)
                      +||||++|..+.
T Consensus       110 ~v~e~l~G~~l~  121 (357)
T 3ats_A          110 FLMDYVEGVVPP  121 (357)
T ss_dssp             EEEECCCCBCCC
T ss_pred             EEEEecCCCChh
Confidence            999999986643

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.07  E-value=0.0027  Score=68.44  Aligned_cols=76  Identities=14%  Similarity=0.126  Sum_probs=54.4

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcC--CCceeEEeeEEecCCeeEEEEEccCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM--HPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~--H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      +..+++|....+|++..  ++..+++|.-...   ....|..|.+.+..+-.  ...+.+.++++..++..|+||||+++
T Consensus        41 ~~~l~gG~~n~~y~v~~--~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G  115 (312)
T 3jr1_A           41 KEKLYSGEMNEIWLIND--EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNK  115 (312)
T ss_dssp             EEEECCSSSSEEEEEES--SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCC
T ss_pred             eEEeCCccceeeeEEEE--CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccC
Confidence            44567778888999874  5678888876432   23346667666655322  35688888888888899999999998


Q ss_pred             CCH
Q 002105          766 KEL  768 (966)
Q Consensus       766 g~L  768 (966)
                      ..+
T Consensus       116 ~~~  118 (312)
T 3jr1_A          116 SKN  118 (312)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            764

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.07  E-value=0.0012  Score=74.22  Aligned_cols=77  Identities=14%  Similarity=0.149  Sum_probs=45.0

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-------ccccchHHHHHHHHhhcCC-C-ceeEEeeEEecCCeeEE
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-------ITTSSFWPDVSQFGKLIMH-P-NIVRLHGVCRSEKAAYL  758 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-------~~~~~~~~e~~~~~~~~~H-~-niv~l~g~~~~~~~~~l  758 (966)
                      ...+|.|..+.||++....++..++||.......       .....+..|.+.+..+-.+ | .+.+++.+.  ++..++
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~d--~~~~~l  112 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSD--TEMAVT  112 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEE--TTTTEE
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEEc--CCccEE
Confidence            3456888889999997645678899997643211       1223345666665543222 3 344566543  445689


Q ss_pred             EEEccCCC
Q 002105          759 VYEYIEGK  766 (966)
Q Consensus       759 v~Ey~~~g  766 (966)
                      ||||+++.
T Consensus       113 vmE~l~g~  120 (397)
T 2olc_A          113 VMEDLSHL  120 (397)
T ss_dssp             EECCCTTS
T ss_pred             EEEeCCCc
Confidence            99999874

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.99  E-value=0.00026  Score=68.87  Aligned_cols=34  Identities=9%  Similarity=-0.015  Sum_probs=14.6

Q ss_pred             cceEEEccCCCCCCCCCcCccCCCCCCEEEeecc
Q 002105          205 NLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYN  238 (966)
Q Consensus       205 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  238 (966)
                      +|++||++++.++..--..+..+++|++|+|+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            3445555544443322233344444444444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.98  E-value=0.0002  Score=69.68  Aligned_cols=34  Identities=12%  Similarity=0.047  Sum_probs=15.6

Q ss_pred             CCCEEEccCCCCcccCCcccccCCcceEEEccCC
Q 002105          181 SLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYN  214 (966)
Q Consensus       181 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N  214 (966)
                      .|+.||++++.++..--..+..+++|++|+|++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            4455555554443332333444455555555544

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=96.68  E-value=0.0055  Score=65.31  Aligned_cols=76  Identities=17%  Similarity=0.210  Sum_probs=49.0

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCC--CceeEEeeEEecCCeeEEEEEccCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMH--PNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H--~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      +...|.|..+.||+++. .+|+.|+||+-..........|..|...+..+-+.  --+.+.+++.    ..++||||+++
T Consensus        20 v~~~g~G~~~~vyrv~l-~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~l~~   94 (288)
T 3f7w_A           20 VAERGHSHRWHLYRVEL-ADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVDE   94 (288)
T ss_dssp             EEEEEEETTEEEEEEEE-TTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCCC
T ss_pred             EEecCCCCCeEEEEEEE-CCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEeecc
Confidence            34457778888999986 88999999975443333333466777766653222  1244555542    24799999987


Q ss_pred             CCH
Q 002105          766 KEL  768 (966)
Q Consensus       766 g~L  768 (966)
                      +..
T Consensus        95 ~~~   97 (288)
T 3f7w_A           95 RPP   97 (288)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            753

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=96.57  E-value=0.004  Score=70.45  Aligned_cols=73  Identities=16%  Similarity=0.211  Sum_probs=46.2

Q ss_pred             CCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCCC-cC------CcccccccccCCC---CCCCcchHHHHHHHHH
Q 002105          799 SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS-IN------SSAYVAPETKESK---DITEKGDIYGFGLILI  868 (966)
Q Consensus       799 ~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~y~aPE~~~~~---~~~~~~Dv~S~Gv~l~  868 (966)
                      .+.++|+|++|.||+++.+.   +.+.|++.+...+... .+      ...|++|++....   .-....++++....+|
T Consensus       231 ~~~liHGDl~~~Nil~~~~~---~~lID~e~a~~G~p~~Dla~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQDS---TQVIDPEFSFYGPMGFDIGAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTW  307 (420)
T ss_dssp             CCEEECSCCSGGGEEECSSC---EEECCCTTCEEECHHHHHHHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHH
T ss_pred             CCeEEecCCCCCcEEEeCCC---CEEEeCcccccCchHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHH
Confidence            67899999999999998653   6788887765432110 00      1246777655321   1122355668888888


Q ss_pred             HHHcCC
Q 002105          869 DLLTGK  874 (966)
Q Consensus       869 el~tg~  874 (966)
                      +..+++
T Consensus       308 ~~y~~~  313 (420)
T 2pyw_A          308 NLFNKR  313 (420)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887753

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.34  E-value=0.0046  Score=57.11  Aligned_cols=58  Identities=19%  Similarity=0.303  Sum_probs=40.5

Q ss_pred             ccccCCceec-cccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCccccc
Q 002105          519 SLDLSNNQLS-GHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGS  578 (966)
Q Consensus       519 ~L~Ls~N~l~-~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~  578 (966)
                      .++.+++.|+ ..+|..+.  ++|+.|||++|+|+...+..|..+++|+.|+|++|++.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence            5566666665 34554332  3577888888888877777778888888888888887654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.33  E-value=0.0066  Score=56.07  Aligned_cols=55  Identities=20%  Similarity=0.300  Sum_probs=33.1

Q ss_pred             EEECCCCCCC-CCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCC
Q 002105          114 FLNLSNNNFT-GPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVL  168 (966)
Q Consensus       114 ~L~Ls~N~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  168 (966)
                      .++.+++.++ ..+|.+-..+|++|||++|+|+...+..|..+++|++|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4455555554 233333334577777777777765556667777777777777754

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=96.02  E-value=0.028  Score=61.27  Aligned_cols=42  Identities=12%  Similarity=0.085  Sum_probs=29.3

Q ss_pred             HHHHHHHHhh----------cCCCCeEeecCCCCcEEEcCCCCceEEEeccccc
Q 002105          787 IAKALRFLHF----------HCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA  830 (966)
Q Consensus       787 ia~~l~yLH~----------~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~  830 (966)
                      +.+++++|+.          ...+.++|+|+++.||+++.+  ..+.+.||+.+
T Consensus       199 ~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~--~~~~lIDfe~a  250 (346)
T 2q83_A          199 GLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGEN--EQIWVIDLDTV  250 (346)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGG--GCEEECCCTTC
T ss_pred             HHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCC--CcEEEEehhhc
Confidence            3456677763          135789999999999999743  23567777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.93  E-value=0.0017  Score=64.26  Aligned_cols=86  Identities=14%  Similarity=0.198  Sum_probs=49.0

Q ss_pred             CcCCCCEEEccCCccCC----CChhhccccccccccccCCceeccc----cCccCCCCCCCcEEeCCCC---cCcc----
Q 002105          489 RLSELMQLKISRNKLFG----DIPEELSSCKKLVSLDLSNNQLSGH----IPASLSEMPVLGQLDLSEN---QLSG----  553 (966)
Q Consensus       489 ~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~LdLs~N---~l~g----  553 (966)
                      .-+.|+.|+|++|++..    .+...+..-+.|+.|+|++|.|...    +-+.+..-+.|+.|+|++|   .+..    
T Consensus        68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~  147 (197)
T 1pgv_A           68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM  147 (197)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred             hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence            34455666666666542    2333444556677777777777642    1233444556888888765   3332    


Q ss_pred             cCCcccccCCCCCeeeCcCCc
Q 002105          554 KIPQTLGRVASLVQVNISHNH  574 (966)
Q Consensus       554 ~~p~~l~~l~~L~~l~ls~N~  574 (966)
                      .+-..+..-+.|..|+++.|.
T Consensus       148 ~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          148 DMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhCCCcCeEeccCCC
Confidence            133445556778888876554

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=95.87  E-value=0.048  Score=59.28  Aligned_cols=33  Identities=9%  Similarity=-0.115  Sum_probs=24.4

Q ss_pred             CCCeEeecCCCCcEEEcCCC--CceEEEeccccce
Q 002105          799 SPSVVAGDVSPGKVIVDGKD--EPHLRLSVPGLAY  831 (966)
Q Consensus       799 ~~~iiHrDlk~~Nill~~~~--~~~~~~~~~~~~~  831 (966)
                      .+.++|+|+.+.||+++.+.  ...+.+.||+.+.
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~  216 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAK  216 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCE
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcC
Confidence            56899999999999998632  1345677777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.03  E-value=0.0042  Score=61.47  Aligned_cols=86  Identities=17%  Similarity=0.106  Sum_probs=37.7

Q ss_pred             CCcceEEEccCCCCCCC----CCcCccCCCCCCEEEeeccccccc----CCcCCCCCCccceEeccccc---cCC----C
Q 002105          203 LRNLKWIYLGYNNLSGE----IPKEIGDLTSLNHLDLVYNNLTGQ----IPPSFGNLSNLRYLFLYQNK---LTG----S  267 (966)
Q Consensus       203 l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~n~---l~~----~  267 (966)
                      -+.|+.|+|++|.+...    +.+.+..-+.|++|+|+.|.|...    +-..+..-+.|++|+|++|.   +..    .
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~  148 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  148 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence            34455555555544321    112222334555555555555421    11223333446666665432   111    1


Q ss_pred             CChhhhcCCCCCEEEccCCcC
Q 002105          268 IPKSILGLKSLVSFDLSDNYL  288 (966)
Q Consensus       268 ~p~~l~~l~~L~~L~Ls~N~l  288 (966)
                      +...+..-++|+.|+++.|.+
T Consensus       149 ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          149 MMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCCcCeEeccCCCc
Confidence            222344445666666665543

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=94.02  E-value=0.11  Score=55.85  Aligned_cols=136  Identities=12%  Similarity=0.102  Sum_probs=70.1

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCC-ceeEEeeE------EecCCeeEEEEE
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHP-NIVRLHGV------CRSEKAAYLVYE  761 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~-niv~l~g~------~~~~~~~~lv~E  761 (966)
                      ..+++|....+|++.. .+| .+++|.....  .....+..|...+..+-.|. .+.+++..      ...++..++|||
T Consensus        28 ~~i~~G~~n~~~~v~~-~~g-~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~l~~  103 (322)
T 2ppq_A           28 KGIAEGVENSNFLLHT-TKD-PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAALIS  103 (322)
T ss_dssp             EEECC---EEEEEEEE-SSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEEEEE
T ss_pred             eccCCCcccceEEEEe-CCc-cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEEEEE
Confidence            3445566677999875 445 6788876542  12233444554443321221 12333321      122456799999


Q ss_pred             ccCCCCHH-----H------H---HHc----C-----------CHHHHHH------------HHHHHHHHHHHHhhc---
Q 002105          762 YIEGKELS-----E------V---LRN----L-----------SWERRRK------------VAIGIAKALRFLHFH---  797 (966)
Q Consensus       762 y~~~g~L~-----~------~---l~~----l-----------~~~~~~~------------i~~~ia~~l~yLH~~---  797 (966)
                      |++|..+.     .      .   +|.    +           .|.....            +...+.+.+++++..   
T Consensus       104 ~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~  183 (322)
T 2ppq_A          104 FLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWPK  183 (322)
T ss_dssp             CCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHHHHHCCC
T ss_pred             eCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCcc
Confidence            99986531     1      1   121    1           1433211            111245566666532   


Q ss_pred             -CCCCeEeecCCCCcEEEcCCCCceEEEeccccc
Q 002105          798 -CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA  830 (966)
Q Consensus       798 -~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~  830 (966)
                       ....++|+|+.+.||+++++  ..+.+.||+.+
T Consensus       184 ~~~~~liHgDl~~~Nil~~~~--~~~~lIDf~~a  215 (322)
T 2ppq_A          184 DLPAGVIHADLFQDNVFFLGD--ELSGLIDFYFA  215 (322)
T ss_dssp             SSCEEEECSCCCGGGEEEETT--EEEEECCCTTC
T ss_pred             cCCcccCCCCCCccCEEEeCC--ceEEEecchhc
Confidence             24579999999999999854  22356777644

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=93.75  E-value=0.082  Score=57.14  Aligned_cols=72  Identities=13%  Similarity=0.140  Sum_probs=40.3

Q ss_pred             CCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCC-CceeEEeeE-----EecCCeeEEEEEccCCCC
Q 002105          694 KGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMH-PNIVRLHGV-----CRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       694 ~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H-~niv~l~g~-----~~~~~~~~lv~Ey~~~g~  767 (966)
                      |+...||++.. .+|..+++|...... .....+..|...+..+-.+ -.+++.+..     ...++..++||||++|..
T Consensus        36 g~~n~~y~v~~-~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i~G~~  113 (328)
T 1zyl_A           36 SYENRVYQFQD-EDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQ  113 (328)
T ss_dssp             CSSSEEEEECC-TTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCEE
T ss_pred             CcccceEEEEc-CCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEecCCCC
Confidence            56667998765 567678999875321 1223344454444332112 124444443     223456789999999854

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=93.46  E-value=0.1  Score=58.81  Aligned_cols=71  Identities=14%  Similarity=0.068  Sum_probs=41.4

Q ss_pred             CCCCCccEEEEEEEec-------CCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          691 RGKKGVSSSYKVRSLA-------NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~-------~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      +++|....+|++....       .+..+++|.-...  .....+..|...+..+-.+.-..++++++..    .+||||+
T Consensus        81 l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~e~l  154 (429)
T 1nw1_A           81 IKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEEYI  154 (429)
T ss_dssp             ECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEECCC
T ss_pred             eCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEEEEe
Confidence            4555667799987621       2467777765221  1113456676665553334333667776543    3899999


Q ss_pred             CCCC
Q 002105          764 EGKE  767 (966)
Q Consensus       764 ~~g~  767 (966)
                      +|.+
T Consensus       155 ~G~~  158 (429)
T 1nw1_A          155 PSRP  158 (429)
T ss_dssp             CEEE
T ss_pred             CCcc
Confidence            8643

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=93.00  E-value=0.78  Score=45.61  Aligned_cols=99  Identities=19%  Similarity=0.135  Sum_probs=59.2

Q ss_pred             CCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCCCCcCCc
Q 002105          766 KELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS  841 (966)
Q Consensus       766 g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (966)
                      -+|.+.|+    .++..+.+.++.|.+++|.-.-....+  ..+=+-|..|++..++.  |.+.... .      .....
T Consensus        33 vSL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~~~~~--~~~i~~~~~i~l~~dG~--V~f~~~~-s------~~~~~  101 (229)
T 2yle_A           33 LSLEEILRLYNQPINEEQAWAVCYQCCGSLRAAARRRQP--RHRVRSAAQIRVWRDGA--VTLAPAA-D------DAGEP  101 (229)
T ss_dssp             EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCC--CCCCCSGGGEEEETTSC--EEECCC--------------
T ss_pred             ccHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcccC--CceecCCcceEEecCCc--eeccccc-c------ccccc
Confidence            47889886    589999999999999998766111011  12233467888876554  3333211 0      01123


Q ss_pred             ccccccccCCCCCCCcchHHHHHHHHHHHHcCCCC
Q 002105          842 AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSP  876 (966)
Q Consensus       842 ~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p  876 (966)
                      .+.|||... ...+.+.=|||+|+++|..+-=..|
T Consensus       102 ~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~  135 (229)
T 2yle_A          102 PPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK  135 (229)
T ss_dssp             -----CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence            467888764 3456788999999999998874444

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=92.65  E-value=0.1  Score=57.52  Aligned_cols=70  Identities=13%  Similarity=0.060  Sum_probs=37.2

Q ss_pred             CCccEEEEEEEec-------CCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          694 KGVSSSYKVRSLA-------NDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       694 ~g~~~vy~~~~~~-------~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      |-...+|++....       ++..+++|+- ...........+|...+..+-.+.-..++++++..    .+||||++|.
T Consensus        61 G~TN~~y~v~~~~~~~~~~~~~~~~vlR~~-g~~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e~i~G~  135 (379)
T 3feg_A           61 GLSNLLFRCSLPDHLPSVGEEPREVLLRLY-GAILQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQYIPSR  135 (379)
T ss_dssp             ---CCEEEEECCTTSCCCSSCCSEEEEEEC-C---CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEECCSEE
T ss_pred             cccccEEEEEeCCCccccCCCCCeEEEEEC-CCccchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEEEecCc
Confidence            3444588877521       2467777763 21111223345666655544334334666776654    2999999986


Q ss_pred             CH
Q 002105          767 EL  768 (966)
Q Consensus       767 ~L  768 (966)
                      .+
T Consensus       136 ~l  137 (379)
T 3feg_A          136 PL  137 (379)
T ss_dssp             EC
T ss_pred             cC
Confidence            54

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=92.30  E-value=0.56  Score=49.82  Aligned_cols=70  Identities=7%  Similarity=-0.055  Sum_probs=35.6

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc-CCCCH
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI-EGKEL  768 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~-~~g~L  768 (966)
                      ..++|....+|++      ..+++|.-..... ...+...|...+..+-.+.-..++++++  ++.-++|+||+ +|.++
T Consensus        25 ~l~gG~tN~~~~~------~~~vlR~~~~~~~-~~~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e~i~~g~~l   95 (301)
T 3dxq_A           25 ERLGGLTNLVFRA------GDLCLRIPGKGTE-EYINRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTRYIAGAQTM   95 (301)
T ss_dssp             EEESCSSEEEEEE------TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEECCTTCEEC
T ss_pred             EcCCcccccccee------eeEEEECCCCCcc-ceeCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEeecCCCccC
Confidence            3455666779987      4577776543211 1122345555444321221113555543  33347899999 65444

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=91.88  E-value=0.57  Score=53.06  Aligned_cols=74  Identities=8%  Similarity=-0.015  Sum_probs=39.3

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCH
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL  768 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L  768 (966)
                      .+++|-...+|++.....+..+++|.-.... ...-+...|...+..+-.+.-..++++++.  +  .+||||++|..+
T Consensus       115 ~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~-~~~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~~l  188 (458)
T 2qg7_A          115 IINGGITNILIKVKDMSKQAKYLIRLYGPKT-DEIINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGYAL  188 (458)
T ss_dssp             EECC--CEEEEEEEETTTTEEEEEEEECC-C-CSCSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSEEC
T ss_pred             EcCCCeEeEEEEEEECCCCceEEEEECCCCh-hhhcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCccC
Confidence            3455566779998862224677777542211 111112366666655323333357777763  2  259999997443

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=89.73  E-value=0.51  Score=33.48  Aligned_cols=10  Identities=10%  Similarity=0.507  Sum_probs=4.9

Q ss_pred             hhhHHHHHHH
Q 002105          621 LVVACFLAVL  630 (966)
Q Consensus       621 ~iv~i~~~~~  630 (966)
                      .+++++++++
T Consensus        13 ~Ia~~vVGvl   22 (44)
T 2jwa_A           13 SIISAVVGIL   22 (44)
T ss_dssp             HHHHHHHHHH
T ss_pred             chHHHHHHHH
Confidence            3555555544

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=89.26  E-value=0.59  Score=51.30  Aligned_cols=29  Identities=21%  Similarity=0.172  Sum_probs=21.4

Q ss_pred             CCCeEeecCCCCcEEEcCCCCceEEEeccccc
Q 002105          799 SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA  830 (966)
Q Consensus       799 ~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~  830 (966)
                      ...++|+|+++.|||++++.   +.+.|+..+
T Consensus       211 ~~~l~HgDl~~~Nil~~~~~---~~lID~e~a  239 (369)
T 3c5i_A          211 TIVFCHNDLQENNIINTNKC---LRLIDFEYS  239 (369)
T ss_dssp             CEEEECSCCCGGGEEECC-C---EEECCCTTC
T ss_pred             CeEEEeCCCCcccEEecCCc---EEEEEecCC
Confidence            45799999999999997532   566676544

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=88.46  E-value=0.53  Score=33.43  Aligned_cols=26  Identities=15%  Similarity=0.301  Sum_probs=11.2

Q ss_pred             hhHHHH-HHHHHHHHHHHHHHHHHhhh
Q 002105          622 VVACFL-AVLIMLALAAFAITVIRGKK  647 (966)
Q Consensus       622 iv~i~~-~~~ivl~l~~~~~~~~~~~~  647 (966)
                      |++.++ +++++++++...++++|+|+
T Consensus        12 IA~gVVgGv~~v~ii~~~~~~~~RRRr   38 (44)
T 2l2t_A           12 IAAGVIGGLFILVIVGLTFAVYVRRKS   38 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence            444433 44444444444444444433

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=88.09  E-value=2.1  Score=46.27  Aligned_cols=69  Identities=13%  Similarity=0.129  Sum_probs=39.0

Q ss_pred             CCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCC--CceeEEeeE------EecCCeeEEEEEcc
Q 002105          692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMH--PNIVRLHGV------CRSEKAAYLVYEYI  763 (966)
Q Consensus       692 g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H--~niv~l~g~------~~~~~~~~lv~Ey~  763 (966)
                      |.|....||++.. .+| .+++|+......      ..|...+..+-.+  |.+++.+..      ...++..++||||+
T Consensus        32 G~g~~N~vy~v~~-~~g-~~vLK~~~~~~~------~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i  103 (339)
T 3i1a_A           32 GADTNAFAYQADS-ESK-SYFIKLKYGYHD------EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFI  103 (339)
T ss_dssp             TSCSSCEEEEEEC-SSC-EEEEEEEECSSC------CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECC
T ss_pred             cCccccceEEEEe-CCC-CEEEEEecCccc------hHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEecc
Confidence            3333567999875 556 888887644321      2333333222111  224444432      23457789999999


Q ss_pred             CCCCH
Q 002105          764 EGKEL  768 (966)
Q Consensus       764 ~~g~L  768 (966)
                      +|..+
T Consensus       104 ~G~~~  108 (339)
T 3i1a_A          104 HAPNG  108 (339)
T ss_dssp             CCCBT
T ss_pred             CCCcC
Confidence            98765

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=86.54  E-value=0.71  Score=32.88  Aligned_cols=24  Identities=21%  Similarity=0.188  Sum_probs=10.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh
Q 002105          623 VACFLAVLIMLALAAFAITVIRGK  646 (966)
Q Consensus       623 v~i~~~~~ivl~l~~~~~~~~~~~  646 (966)
                      ++++++++++++++..+++++|+|
T Consensus        15 ~gVVgGv~~~~ii~~~~~~~~RRr   38 (44)
T 2ks1_B           15 TGMVGALLLLLVVALGIGLFMRRR   38 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eehhHHHHHHHHHHHHHHHHhhhh
Confidence            333444444444443334444443

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=80.43  E-value=2.7  Score=28.89  Aligned_cols=22  Identities=27%  Similarity=0.165  Sum_probs=12.6

Q ss_pred             CCcchhhhHHHHHHHHHHHHHH
Q 002105          616 NQTWWLVVACFLAVLIMLALAA  637 (966)
Q Consensus       616 ~~~~~~iv~i~~~~~ivl~l~~  637 (966)
                      ..+...++++++++++.+++++
T Consensus         7 ~ls~GaIAGiVvG~v~gv~li~   28 (38)
T 2k1k_A            7 GLTGGEIVAVIFGLLLGAALLL   28 (38)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCceeeeehHHHHHHHHHH
Confidence            3445567777776655544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	966
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	3e-31
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-31
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-09
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	4e-31
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-30
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	1e-29
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	1e-29
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-29
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-28
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-28
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-28
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-28
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-28
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-25
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-25
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-24
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-22
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	4e-28
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	5e-28
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	5e-28
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	7e-28
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	1e-27
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-27
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	3e-27
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	3e-27
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	5e-27
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	7e-27
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	1e-26
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-26
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-26
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-25
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-23
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-26
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	4e-26
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	5e-26
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	7e-26
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	8e-26
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-25
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	2e-25
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	3e-25
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	3e-25
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-24
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-24
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-23
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-21
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	4e-24
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-23
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-23
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	8e-23
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-22
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	3e-22
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	5e-22
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	8e-22
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	2e-21
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-21
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	3e-21
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	3e-21
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	4e-21
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	1e-20
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	6e-20
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	6e-20
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	7e-20
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-19
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-19
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	4e-19
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	5e-19
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	3e-18
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-17
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	1e-16
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-16
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-15
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	1e-15
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	2e-15
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	4e-14
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-13
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-13
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-11
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-11
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-10
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	8e-11
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-10
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-10
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-10
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-09
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-08
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	4e-05
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	4e-05

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  123 bits (310), Expect = 3e-31
 Identities = 51/261 (19%), Positives = 93/261 (35%), Gaps = 27/261 (10%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           G       ++V   A    F  K ++  +     +   ++ Q   ++ HP +V LH    
Sbjct: 35  GTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEI-QTMSVLRHPTLVNLHDAFE 93

Query: 752 SEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDV 807
            +    ++YE++ G EL E + +    +S +   +    + K L  +H +     V  D+
Sbjct: 94  DDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENN---YVHLDL 150

Query: 808 SPGKVIVDGKDEPHLRLSVPGLAYCTDSKS-----INSSAYVAPETKESKDITEKGDIYG 862
            P  ++   K    L+L   GL    D K        ++ + APE  E K +    D++ 
Sbjct: 151 KPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWS 210

Query: 863 FGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEI 922
            G++   LL+G SP    FG              D ++D          +S       + 
Sbjct: 211 VGVLSYILLSGLSP----FGGENDDETLRNVKSCDWNMDDSAFS----GISE------DG 256

Query: 923 MNLALHCTAGDPTARPCASDV 943
            +        DP  R      
Sbjct: 257 KDFIRKLLLADPNTRMTIHQA 277

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score =  122 bits (306), Expect = 3e-31
 Identities = 73/309 (23%), Positives = 119/309 (38%), Gaps = 12/309 (3%)

Query: 18  CHGAELELLLSFKSTVNDPYNFLSNWDSSVTFC--KWNGISCQNST---HVNAIELSAKN 72
           C+  + + LL  K  + +P   LS+W  +   C   W G+ C   T    VN ++LS  N
Sbjct: 3   CNPQDKQALLQIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 73  ISGK--ISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPI-- 128
           +     I SS+ +LP++  + +              +    L +L +++ N +G +P   
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

Query: 129 GSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLA 188
             +  L  LD S N LSG +P  I S   L  +   GN + G IP S  + + L      
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 189 SNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSF 248
           S   +                     N+       +           +  N         
Sbjct: 182 SRNRLTGKIPPTFA-NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240

Query: 249 GNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLF 308
           G   NL  L L  N++ G++P+ +  LK L S ++S N L GEIP +   LQ  ++    
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYA 299

Query: 309 SNNFTGKIP 317
           +N      P
Sbjct: 300 NNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.0 bits (206), Expect = 4e-18
 Identities = 58/275 (21%), Positives = 97/275 (35%), Gaps = 4/275 (1%)

Query: 309 SNNFTGKIPSSLASMPKLQVLQLWSNQFSG--EIPSNLGKQNNLTVIDLSTN-FLTGKIP 365
           +  + G +  +     ++  L L          IPS+L     L  + +     L G IP
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 366 ETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFL 425
             +     L  L +   ++ G IP+ LS  K+L  +    N LSG L    + LP +  +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 426 DISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPR 485
              GN +SG I +     + L        N          ++                  
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS 214

Query: 486 SFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLD 545
                 +  Q              ++   K L  LDL NN++ G +P  L+++  L  L+
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 546 LSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLP 580
           +S N L G+IPQ  G +        ++N      P
Sbjct: 275 VSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 61.3 bits (147), Expect = 1e-10
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 116 NLSNNNFTGPVP--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIP 173
           +L NN   G +P  +  L  L  L++S N L G+IP+  G+     V     N  +   P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

Query: 174 LS 175
           L 
Sbjct: 309 LP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.1 bits (136), Expect = 3e-09
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 43  WDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIP 102
              +     ++      S ++N ++L    I G +   +  L  + S+N+S N L GEIP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 103 SDIFSSSNSLRFLNLSNNNFTGPVPIGSLS 132
                +         +NN      P+ + +
Sbjct: 286 Q--GGNLQRFDVSAYANNKCLCGSPLPACT 313

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 4e-31
 Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 33/229 (14%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKAL 791
           +   H NI+   G   +     +V ++ EG  L   L          +   +A   A+ +
Sbjct: 59  RKTRHVNILLFMGYS-TAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGM 117

Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS--------AY 843
            +LH      ++  D+    + +   ++  +++   GLA      S +           +
Sbjct: 118 DYLHAKS---IIHRDLKSNNIFLH--EDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILW 172

Query: 844 VAPE---TKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHL 900
           +APE    ++    + + D+Y FG++L +L+TG+ P        + I    R        
Sbjct: 173 MAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGR-------- 224

Query: 901 DTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES 949
             ++ P +    S+    +  +M     C       RP    +  ++E 
Sbjct: 225 -GYLSPDLSKVRSNCPKAMKRLM---AECLKKKRDERPLFPQILASIEL 269

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 1e-30
 Identities = 56/303 (18%), Positives = 106/303 (34%), Gaps = 54/303 (17%)

Query: 661 WEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN 720
           WEV        ++L + E +           G       +      N    V  K +   
Sbjct: 8   WEVPR------ETLKLVERL-----------GAGQFGEVWMGYY--NGHTKVAVKSLKQG 48

Query: 721 TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN-----L 775
           +++  +F  + +   +L  H  +VRL+ V  +++  Y++ EY+E   L + L+      L
Sbjct: 49  SMSPDAFLAEANLMKQL-QHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFLKTPSGIKL 106

Query: 776 SWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA----- 830
           +  +   +A  IA+ + F+        +  D+    ++V   D    +++  GLA     
Sbjct: 107 TINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVS--DTLSCKIADFGLARLIED 161

Query: 831 --YCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIV 888
             Y     +     + APE       T K D++ FG++L +++T            E I 
Sbjct: 162 NEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQ 221

Query: 889 EWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE 948
                     +L+         +         E+  L   C    P  RP    +   LE
Sbjct: 222 ----------NLERGYRMVRPDNCPE------ELYQLMRLCWKERPEDRPTFDYLRSVLE 265

Query: 949 SCF 951
             F
Sbjct: 266 DFF 268

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 1e-29
 Identities = 53/315 (16%), Positives = 103/315 (32%), Gaps = 50/315 (15%)

Query: 670 VGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWP 729
           + +++ + E I           GK      ++ +      + V  KI       +     
Sbjct: 1   IARTIVLQESI-----------GKGRFGEVWRGK---WRGEEVAVKIFSSREERSWFREA 46

Query: 730 DVSQFGKLIMHPNIVRLHGVCRSEKAA----YLVYEYIEGKELSEVLRN--LSWERRRKV 783
           ++ Q   L  H NI+        +       +LV +Y E   L + L    ++ E   K+
Sbjct: 47  EIYQTVML-RHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKL 105

Query: 784 AIGIAKALRFLHFHC-----SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS- 837
           A+  A  L  LH         P++   D+    ++V         ++  GLA   DS + 
Sbjct: 106 ALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVK--KNGTCCIADLGLAVRHDSATD 163

Query: 838 ---------INSSAYVAPE------TKESKDITEKGDIYGFGLILIDLLTGKSPADADFG 882
                    + +  Y+APE        +  +  ++ DIY  GL+  ++    S       
Sbjct: 164 TIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHED 223

Query: 883 -----VHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTAR 937
                      + +         +  + P I     S +  +  +  +   C   +  AR
Sbjct: 224 YQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCE-ALRVMAKIMRECWYANGAAR 282

Query: 938 PCASDVTKTLESCFR 952
             A  + KTL    +
Sbjct: 283 LTALRIKKTLSQLSQ 297

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 1e-29
 Identities = 51/286 (17%), Positives = 99/286 (34%), Gaps = 39/286 (13%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVC 750
           G       +KV    + +    K I +++     +    ++ Q       P IV  +G  
Sbjct: 15  GAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIREL-QVLHECNSPYIVGFYGAF 73

Query: 751 RSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDV 807
            S+    +  E+++G  L +VL+    +  +   KV+I + K L +L       ++  DV
Sbjct: 74  YSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDV 131

Query: 808 SPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA----YVAPETKESKDITEKGDIYGF 863
            P  ++V+ +    ++L   G++        NS      Y++PE  +    + + DI+  
Sbjct: 132 KPSNILVNSRG--EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSM 189

Query: 864 GLILIDLLTGKSPADA----------------DFGVHESIVEWARYCYSDCHLDTWVDPF 907
           GL L+++  G+ P                   D               S   +D+     
Sbjct: 190 GLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMA 249

Query: 908 IRGHVSSIQNEIV----------EIMNLALHCTAGDPTARPCASDV 943
           I   +  I NE            E  +    C   +P  R     +
Sbjct: 250 IFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQL 295

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (290), Expect = 2e-29
 Identities = 54/286 (18%), Positives = 95/286 (33%), Gaps = 43/286 (15%)

Query: 671 GKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTS--SFW 728
           G+ L  D  I           G+    + YK       ++    ++ D     +    F 
Sbjct: 8   GRFLKFDIEI-----------GRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFK 56

Query: 729 PDVSQFGKLIMHPNIVRLHGVC----RSEKAAYLVYEYIEGKELSEVLRN---LSWERRR 781
            +      L  HPNIVR +       + +K   LV E +    L   L+    +  +  R
Sbjct: 57  EEAEMLKGL-QHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLR 115

Query: 782 KVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS 841
                I K L+FLH    P ++  D+    + + G     +++   GLA    +    + 
Sbjct: 116 SWCRQILKGLQFLHTRTPP-IIHRDLKCDNIFITGPT-GSVKIGDLGLATLKRASFAKAV 173

Query: 842 A----YVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
                ++APE  E K   E  D+Y FG+ ++++ T + P        + I          
Sbjct: 174 IGTPEFMAPEMYEEK-YDESVDVYAFGMCMLEMATSEYPYSECQNAAQ-IYRRVTSGVKP 231

Query: 898 CHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
              D    P              E+  +   C   +   R    D+
Sbjct: 232 ASFDKVAIP--------------EVKEIIEGCIRQNKDERYSIKDL 263

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  116 bits (291), Expect = 1e-28
 Identities = 45/263 (17%), Positives = 93/263 (35%), Gaps = 31/263 (11%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           G       ++    A    FV K I     +   +   ++      + HP ++ LH    
Sbjct: 38  GSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEI-SIMNQLHHPKLINLHDAFE 96

Query: 752 SEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDV 807
            +    L+ E++ G EL + +      +S            + L+ +H     S+V  D+
Sbjct: 97  DKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDI 153

Query: 808 SPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN-----SSAYVAPETKESKDITEKGDIYG 862
            P  ++ + K    +++   GLA   +   I      ++ + APE  + + +    D++ 
Sbjct: 154 KPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWA 213

Query: 863 FGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIV 920
            G++   LL+G SP   + D    +++                   F     SS+  E  
Sbjct: 214 IGVLGYVLLSGLSPFAGEDDLETLQNVKRCDW-------------EFDEDAFSSVSPEAK 260

Query: 921 EIMNLALHCTAGDPTARPCASDV 943
           + +    +    +P  R    D 
Sbjct: 261 DFIK---NLLQKEPRKRLTVHDA 280

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 1e-28
 Identities = 54/295 (18%), Positives = 99/295 (33%), Gaps = 48/295 (16%)

Query: 661 WEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN 720
           W +        K L + + I           GK                +  VK I   N
Sbjct: 2   WALNM------KELKLLQTI-----------GKGEFGDVMLGDY--RGNKVAVKCIK--N 40

Query: 721 TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAA-YLVYEYIEGKELSEVLRN----- 774
             T  +F  + S   +L  H N+V+L GV   EK   Y+V EY+    L + LR+     
Sbjct: 41  DATAQAFLAEASVMTQL-RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSV 99

Query: 775 LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEP-HLRLSVPGLAYCT 833
           L  +   K ++ + +A+ +L      + V  D++   V+V   +        +   A  T
Sbjct: 100 LGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST 156

Query: 834 DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARY 893
                    + APE    K  + K D++ FG++L ++ +          + + +      
Sbjct: 157 QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVV------ 210

Query: 894 CYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE 948
                 ++                    +  +  +C   D   RP    + + LE
Sbjct: 211 ----PRVEKGYKMDAPDGCPP------AVYEVMKNCWHLDAAMRPSFLQLREQLE 255

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 2e-28
 Identities = 40/268 (14%), Positives = 91/268 (33%), Gaps = 35/268 (13%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           G          +        V  K+I   +++   F  +      L  H  +V+L+GVC 
Sbjct: 13  GTGQFGVVKYGKW--RGQYDVAIKMIKEGSMSEDEFIEEAKVMMNL-SHEKLVQLYGVCT 69

Query: 752 SEKAAYLVYEYIEGKELSEVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDV 807
            ++  +++ EY+    L   L         ++  ++   + +A+ +L        +  D+
Sbjct: 70  KQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ---FLHRDL 126

Query: 808 SPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS-------AYVAPETKESKDITEKGDI 860
           +    +V+  D+  +++S  GL+         SS        +  PE       + K DI
Sbjct: 127 AARNCLVN--DQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDI 184

Query: 861 YGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIV 920
           + FG+++ ++ +        F   E+            H+   +  +     S       
Sbjct: 185 WAFGVLMWEIYSLGKMPYERFTNSETAE----------HIAQGLRLYRPHLASE------ 228

Query: 921 EIMNLALHCTAGDPTARPCASDVTKTLE 948
           ++  +   C       RP    +   + 
Sbjct: 229 KVYTIMYSCWHEKADERPTFKILLSNIL 256

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 2e-28
 Identities = 59/271 (21%), Positives = 97/271 (35%), Gaps = 39/271 (14%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKI--IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV 749
           G        K+R  ++    V K++    +          +V    + + HPNIVR +  
Sbjct: 13  GTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEV-NLLRELKHPNIVRYYDR 71

Query: 750 C--RSEKAAYLVYEYIEGKELSEVLRN-------LSWERRRKVAIGIAKALRFLHFH--C 798
              R+    Y+V EY EG +L+ V+         L  E   +V   +  AL+  H     
Sbjct: 72  IIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDG 131

Query: 799 SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA------YVAPETKESK 852
             +V+  D+ P  V +DGK   +++L   GLA   +  +  + A      Y++PE     
Sbjct: 132 GHTVLHRDLKPANVFLDGKQ--NVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRM 189

Query: 853 DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV 912
              EK DI+  G +L +L     P  A      S  E A        +       I    
Sbjct: 190 SYNEKSDIWSLGCLLYELCALMPPFTA-----FSQKELAG------KIREGKFRRIPYRY 238

Query: 913 SSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
           S       E+  +           RP   ++
Sbjct: 239 SD------ELNEIITRMLNLKDYHRPSVEEI 263

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  115 bits (288), Expect = 4e-28
 Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 15/205 (7%)

Query: 82  FHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSN 141
             L ++ES+  ++NQ+S   P  I ++   L  L+L+ N       + SL+ L  LDL+N
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIGTLASLTNLTDLDLAN 250

Query: 142 NMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIG 201
           N +S   P  +   + L  L LG N +    PL+   +T+L    L  NQL       I 
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLE--DISPIS 304

Query: 202 QLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQ 261
            L+NL ++ L +NN+S   P  +  LT L  L    N ++     S  NL+N+ +L    
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 262 NKLTGSIPKSILGLKSLVSFDLSDN 286
           N+++   P  +  L  +    L+D 
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  108 bits (269), Expect = 1e-25
 Identities = 76/384 (19%), Positives = 136/384 (35%), Gaps = 34/384 (8%)

Query: 203 LRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQN 262
           L       LG  N++  + +   DL  +  L      +          L+NL  +    N
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 76

Query: 263 KLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIP----- 317
           +LT   P  +  L  LV   +++N ++   P   +       L          +      
Sbjct: 77  QLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 318 -------SSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCD 370
                  ++++ +  L  L        G   ++L    NLT ++            ++  
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 371 S-GSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISG 429
              +L  LI  +N +    P  +    +L  + L  N+L          L  +  LD++ 
Sbjct: 195 KLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 430 NDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGR 489
           N +S         +T L  L L  N  S  +    G   L NL+L+EN+           
Sbjct: 251 NQISNLAPL--SGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQL--EDISPISN 305

Query: 490 LSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSEN 549
           L  L  L +  N +    P  +SS  KL  L  +NN++S    +SL+ +  +  L    N
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 550 QLSGKIPQTLGRVASLVQVNISHN 573
           Q+S   P  L  +  + Q+ ++  
Sbjct: 362 QISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  106 bits (265), Expect = 4e-25
 Identities = 71/402 (17%), Positives = 136/402 (33%), Gaps = 35/402 (8%)

Query: 92  LSSNQLSGEIP-SDIFSSSN--SLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKI 148
           L S  ++ + P + IF+ +         L   N T  V    L ++  L      +    
Sbjct: 1   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS-- 58

Query: 149 PEEIGSFSGLKVLDLGGNVLVGEIPLS-ISNITSLQIFTLASNQLIGSIPREIGQLRNLK 207
            + +   + L  ++   N L    PL  ++ +  + +       +             L 
Sbjct: 59  IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 118

Query: 208 WIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQI------------PPSFGNLSNLR 255
              +   +    +        S N +  +                         NL+ L 
Sbjct: 119 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178

Query: 256 YLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGK 315
            L +  NK++     +   L +L S   ++N +S   P  ++   NL+ L L  N     
Sbjct: 179 RLDISSNKVSDISVLA--KLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD- 233

Query: 316 IPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLF 375
              +LAS+  L  L L +NQ S   P  L     LT + L  N ++   P     + +  
Sbjct: 234 -IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNL 290

Query: 376 KLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGR 435
           +L         +  + +S  K+L  + L  N +S    S  + L  +  L  + N +S  
Sbjct: 291 ELNENQL----EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSDV 344

Query: 436 IGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSEN 477
                  +T++  L+   N  S   P +    ++  L L++ 
Sbjct: 345 --SSLANLTNINWLSAGHNQISDLTPLA-NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  103 bits (258), Expect = 3e-24
 Identities = 79/378 (20%), Positives = 132/378 (34%), Gaps = 34/378 (8%)

Query: 161 LDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEI 220
             LG   +   +  S +++  +          I SI   +  L NL  I    N L+   
Sbjct: 27  TVLGKTNVTDTV--SQTDLDQVTTLQADRLG-IKSID-GVEYLNNLTQINFSNNQLTDIT 82

Query: 221 PKEIGDLTSLNHLDL------------VYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSI 268
           P  + +LT L  + +               NLTG    +           L         
Sbjct: 83  P--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 140

Query: 269 PKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNF-TGKIPSSLASMPKLQ 327
             +I  + +L           G    ++  L NL  L     +       S LA +  L+
Sbjct: 141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE 200

Query: 328 VLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGK 387
            L   +NQ S   P  +    NL  + L+ N L      TL    +L  L L +N +   
Sbjct: 201 SLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 256

Query: 388 IPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQ 447
            P  LS    L  ++L  N++S    S    L  +  L+++ N            + +L 
Sbjct: 257 AP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQ--LEDISPISNLKNLT 310

Query: 448 MLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDI 507
            L L  NN S   P S  + +L+ L  + N+ S     S   L+ +  L    N++    
Sbjct: 311 YLTLYFNNISDISPVSSLT-KLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT 367

Query: 508 PEELSSCKKLVSLDLSNN 525
           P  L++  ++  L L++ 
Sbjct: 368 P--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 99.3 bits (246), Expect = 1e-22
 Identities = 77/379 (20%), Positives = 144/379 (37%), Gaps = 34/379 (8%)

Query: 65  AIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTG 124
              L   N++  +S +   L  V ++      +   I        N+L  +N SNN  T 
Sbjct: 26  KTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTD 80

Query: 125 PVPIGSLSRLEILDLSNNML------------SGKIPEEIGSFSGLKVLDLGGNVLVGEI 172
             P+ +L++L  + ++NN +            +G             + +L     +   
Sbjct: 81  ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 140

Query: 173 PLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLS-GEIPKEIGDLTSLN 231
             +IS+I++L   T       G+   ++  L NL  +     + +       +  LT+L 
Sbjct: 141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE 200

Query: 232 HLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGE 291
            L    N ++   P      +NL  L L  N+L      ++  L +L   DL++N +S  
Sbjct: 201 SLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 256

Query: 292 IPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLT 351
            P     L  L  L L +N  +   P  LA +  L  L+L  NQ     P +     NLT
Sbjct: 257 APLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLT 310

Query: 352 VIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGE 411
            + L  N ++   P  +     L +L   +N +     +SL+   ++  +   +N++S  
Sbjct: 311 YLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD- 365

Query: 412 LSSEFTRLPLVYFLDISGN 430
             +    L  +  L ++  
Sbjct: 366 -LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 91.6 bits (226), Expect = 4e-20
 Identities = 83/365 (22%), Positives = 145/365 (39%), Gaps = 56/365 (15%)

Query: 55  ISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRF 114
           +S  +   V  ++     I   I   + +L ++  IN S+NQL+   P     +   L  
Sbjct: 38  VSQTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP---LKNLTKLVD 92

Query: 115 LNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEE-----------------IGSFSG 157
           + ++NN      P+ +L+ L  L L NN ++   P +                 I + SG
Sbjct: 93  ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG 152

Query: 158 LKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLS 217
           L  L              ++N+T+L+   ++SN++       + +L NL+ +    N +S
Sbjct: 153 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQIS 210

Query: 218 GEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKS 277
              P  I   T+L+ L L  N L      +  +L+NL  L L  N+++   P  + GL  
Sbjct: 211 DITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTK 264

Query: 278 LVSFDLSDNYLSGEIP--------------------EEVIQLQNLEILHLFSNNFTGKIP 317
           L    L  N +S   P                      +  L+NL  L L+ NN +   P
Sbjct: 265 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 324

Query: 318 SSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKL 377
             ++S+ KLQ L   +N+ S    S+L    N+  +    N ++   P  L +   + +L
Sbjct: 325 --VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 378

Query: 378 ILFSN 382
            L   
Sbjct: 379 GLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.9 bits (219), Expect = 3e-19
 Identities = 71/375 (18%), Positives = 128/375 (34%), Gaps = 46/375 (12%)

Query: 226 DLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSD 285
            L       L   N+T  +  +  +L  +  L   +  +  SI   +  L +L   + S+
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSN 75

Query: 286 NYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLG 345
           N L+   P     L+NL  L     N       +  +           N    +I     
Sbjct: 76  NQLTDITP-----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 346 KQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQN 405
             N   +   S           +     L  L   S   +      L+   +L R+ + +
Sbjct: 131 LTNLNRLELSSNTI------SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 184

Query: 406 NRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFG 465
           N++S    S   +L  +  L  + N +S         +T+L  L+L GN     +     
Sbjct: 185 NKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IGTLAS 239

Query: 466 SDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSS------------ 513
              L +LDL+ N+ S   P     L++L +LK+  N++    P    +            
Sbjct: 240 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297

Query: 514 --------CKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASL 565
                    K L  L L  N +S   P  +S +  L +L  + N++S     +L  + ++
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNI 353

Query: 566 VQVNISHNHFHGSLP 580
             ++  HN      P
Sbjct: 354 NWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.9 bits (180), Expect = 2e-14
 Identities = 59/368 (16%), Positives = 114/368 (30%), Gaps = 47/368 (12%)

Query: 274 GLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWS 333
            L   +   L    ++  + +    L  +  L              +  +  L  +   +
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 334 NQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSL------------FKLILFS 381
           NQ +   P  L     L  I ++ N +    P     + +                 L +
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 382 NSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRL-PLVYFLDISGNDLSGRIGEQK 440
            +      N++S   +L  +        G   ++   L  L     +  +          
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 441 WEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISR 500
            ++T+L+ L    N  S   P    +  L+ L L+ N+       +   L+ L  L ++ 
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILT-NLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 501 NKLFGDIPEELSSCKKLVSLDLSNNQLSGHIP--------------------ASLSEMPV 540
           N++    P  LS   KL  L L  NQ+S   P                    + +S +  
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN 308

Query: 541 LGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAINATAVAGNDLCG 600
           L  L L  N +S   P  +  +  L ++  ++N     + S      IN  +   N +  
Sbjct: 309 LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISD 365

Query: 601 GDSTSGLP 608
               + L 
Sbjct: 366 LTPLANLT 373

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 54/313 (17%), Positives = 99/313 (31%), Gaps = 31/313 (9%)

Query: 349 NLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRL 408
                 L    +T  + +T  D   +  L      ++  I   +    +L ++   NN+L
Sbjct: 23  EKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQL 78

Query: 409 SGELSSEFTRLPLVYFLDISGN----------------DLSGRIGEQKWEMTSLQMLNLA 452
           +    +    L  +  + ++ N                           +          
Sbjct: 79  TD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 453 GNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELS 512
               S  + D      L +L         T  +    L+ L +L IS NK+        +
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL--A 194

Query: 513 SCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISH 572
               L SL  +NNQ+S   P  +  +  L +L L+ NQL      TL  + +L  +++++
Sbjct: 195 KLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 573 NHFHGSLPSTGAFLAINATAVAGNDLCGGDSTSGLPPCKGNKK--NQTWWLVVACFLAVL 630
           N     L        +    +  N +      +GL      +   NQ   +     L  L
Sbjct: 251 NQISN-LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 631 IMLALAAFAITVI 643
             L L    I+ I
Sbjct: 310 TYLTLYFNNISDI 322

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  113 bits (284), Expect = 4e-28
 Identities = 51/263 (19%), Positives = 93/263 (35%), Gaps = 33/263 (12%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVS---QFGKLIMHPNIVRLHG 748
           G     + Y  R + N     +KK+   +   ++  W D+    +F + + HPN ++  G
Sbjct: 24  GHGSFGAVYFARDVRNSEVVAIKKM-SYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRG 82

Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAG 805
               E  A+LV EY  G     +  +   L       V  G  + L +LH   S +++  
Sbjct: 83  CYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHR 139

Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLA--YCTDSKSINSSAYVAPE---TKESKDITEKGDI 860
           DV  G +++   +   ++L   G A      +  + +  ++APE     +      K D+
Sbjct: 140 DVKAGNILLS--EPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDV 197

Query: 861 YGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIV 920
           +  G+  I+L   K P         + +    +                GH S       
Sbjct: 198 WSLGITCIELAERKPPLFNM-----NAMSALYH-----IAQNESPALQSGHWSE------ 241

Query: 921 EIMNLALHCTAGDPTARPCASDV 943
              N    C    P  RP +  +
Sbjct: 242 YFRNFVDSCLQKIPQDRPTSEVL 264

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 5e-28
 Identities = 49/268 (18%), Positives = 98/268 (36%), Gaps = 35/268 (13%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           G       +    L  +   V  K I    ++   F  +     KL  HP +V+L+GVC 
Sbjct: 14  GSGQFGLVHLGYWL--NKDKVAIKTIREGAMSEEDFIEEAEVMMKL-SHPKLVQLYGVCL 70

Query: 752 SEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDV 807
            +    LV+E++E   LS+ LR      + E    + + + +    + +     V+  D+
Sbjct: 71  EQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG---MAYLEEACVIHRDL 127

Query: 808 SPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS-------AYVAPETKESKDITEKGDI 860
           +    +V   +   +++S  G+          SS        + +PE       + K D+
Sbjct: 128 AARNCLVG--ENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDV 185

Query: 861 YGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIV 920
           + FG+++ ++ +       +    E +VE          + T    +     S+      
Sbjct: 186 WSFGVLMWEVFSEGKIPYENRSNSE-VVED---------ISTGFRLYKPRLAST------ 229

Query: 921 EIMNLALHCTAGDPTARPCASDVTKTLE 948
            +  +  HC    P  RP  S + + L 
Sbjct: 230 HVYQIMNHCWKERPEDRPAFSRLLRQLA 257

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 5e-28
 Identities = 47/297 (15%), Positives = 91/297 (30%), Gaps = 51/297 (17%)

Query: 692 GKKGVSSSYKVRSLA----NDMQFVVKKIIDVNTITTS--SFWPDVSQFGKLIMHPNIVR 745
           G        +  +      +    V  K++  +   T   +   ++     L  H NIV 
Sbjct: 32  GAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVN 91

Query: 746 LHGVCRSEKAAYLVYEYIEGKELSEVLRN---------------------LSWERRRKVA 784
           L G C       ++ EY    +L   LR                      L  E     +
Sbjct: 92  LLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFS 151

Query: 785 IGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK------DEPHLRLSVPGLAYCTDSKSI 838
             +AK + FL    S + +  D++   +++         D    R       Y     + 
Sbjct: 152 YQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNAR 208

Query: 839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDC 898
               ++APE+  +   T + D++ +G+ L +L +  S       V     +         
Sbjct: 209 LPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKM-------- 260

Query: 899 HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISS 955
            +          H  +      E+ ++   C   DP  RP    + + +E     S+
Sbjct: 261 -IKEGFRMLSPEHAPA------EMYDIMKTCWDADPLKRPTFKQIVQLIEKQISEST 310

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 7e-28
 Identities = 47/278 (16%), Positives = 95/278 (34%), Gaps = 43/278 (15%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVK-KII--DVNTITTSSFWPDVSQFGKLIMHPNIVRLHG 748
           G     S  +        Q  V  K++        T     +     +L  +P IVRL G
Sbjct: 18  GCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL-DNPYIVRLIG 76

Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVA 804
           VC++E    LV E   G  L + L      +      ++   ++  +++L      + V 
Sbjct: 77  VCQAEAL-MLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---NFVH 132

Query: 805 GDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS---------AYVAPETKESKDIT 855
            D++   V++   +  + ++S  GL+    +     +          + APE    +  +
Sbjct: 133 RDLAARNVLLV--NRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFS 190

Query: 856 EKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS 914
            + D++ +G+ + + L+ G+ P                  Y        +    +G    
Sbjct: 191 SRSDVWSYGVTMWEALSYGQKP------------------YKKMKGPEVMAFIEQGKRME 232

Query: 915 IQNEIV-EIMNLALHCTAGDPTARPCASDVTKTLESCF 951
              E   E+  L   C       RP    V + + +C+
Sbjct: 233 CPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACY 270

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (279), Expect = 1e-27
 Identities = 41/267 (15%), Positives = 88/267 (32%), Gaps = 36/267 (13%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           G       YK ++    +    K I   +      +  ++        HPNIV+L     
Sbjct: 21  GDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASC-DHPNIVKLLDAFY 79

Query: 752 SEKAAYLVYEYIEGKELSEVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDV 807
            E   +++ E+  G  +  V+    R L+  + + V      AL +LH      ++  D+
Sbjct: 80  YENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLH---DNKIIHRDL 136

Query: 808 SPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS------AYVAPE-----TKESKDITE 856
             G ++     +  ++L+  G++                  ++APE     T + +    
Sbjct: 137 KAGNILFT--LDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDY 194

Query: 857 KGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ 916
           K D++  G+ LI++   + P          +++ A+         +              
Sbjct: 195 KADVWSLGITLIEMAEIEPPHHEL-NPMRVLLKIAKSEPPTLAQPSRWSS---------- 243

Query: 917 NEIVEIMNLALHCTAGDPTARPCASDV 943
                  +    C   +  AR   S +
Sbjct: 244 ----NFKDFLKKCLEKNVDARWTTSQL 266

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (277), Expect = 2e-27
 Identities = 51/305 (16%), Positives = 111/305 (36%), Gaps = 48/305 (15%)

Query: 661 WEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN 720
           WE++         +T+   +           G       Y+       +   VK  +  +
Sbjct: 12  WEMER------TDITMKHKL-----------GGGQYGEVYEGVWKKYSLTVAVK-TLKED 53

Query: 721 TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL-----RNL 775
           T+    F  + +   ++  HPN+V+L GVC  E   Y++ E++    L + L     + +
Sbjct: 54  TMEVEEFLKEAAVMKEI-KHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 112

Query: 776 SWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR-----LSVPGLA 830
           S      +A  I+ A+ +L      + +  D++    +V       +        + G  
Sbjct: 113 SAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT 169

Query: 831 YCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEW 890
           Y   + +     + APE+      + K D++ FG++L ++ T          + +     
Sbjct: 170 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ----- 224

Query: 891 ARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESC 950
                    +   ++   R        E  ++  L   C   +P+ RP  +++ +  E+ 
Sbjct: 225 ---------VYELLEKDYRMERPEGCPE--KVYELMRACWQWNPSDRPSFAEIHQAFETM 273

Query: 951 FRISS 955
           F+ SS
Sbjct: 274 FQESS 278

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 3e-27
 Identities = 51/264 (19%), Positives = 98/264 (37%), Gaps = 32/264 (12%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           G+          +   +    VK +     +             K++ H N+V+ +G  R
Sbjct: 14  GEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRR 73

Query: 752 SEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVS 808
                YL  EY  G EL + +     +     ++    +   + +LH      +   D+ 
Sbjct: 74  EGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIK 130

Query: 809 PGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN--------SSAYVAPET-KESKDITEKGD 859
           P  +++D +D  +L++S  GLA      +          +  YVAPE  K  +   E  D
Sbjct: 131 PENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVD 188

Query: 860 IYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEI 919
           ++  G++L  +L G+ P D      +S  E++ +     +L+ W        + S     
Sbjct: 189 VWSCGIVLTAMLAGELPWDQP---SDSCQEYSDWKEKKTYLNPWK------KIDS----- 234

Query: 920 VEIMNLALHCTAGDPTARPCASDV 943
              + L       +P+AR    D+
Sbjct: 235 -APLALLHKILVENPSARITIPDI 257

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 3e-27
 Identities = 50/262 (19%), Positives = 90/262 (34%), Gaps = 34/262 (12%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTS---SFWPDVSQFGKLIMHPNIVRLHG 748
           GK    + Y  R   +     +K +                +V +    + HPNI+RL+G
Sbjct: 15  GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLYG 73

Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAG 805
                   YL+ EY     +   L+       +R       +A AL + H   S  V+  
Sbjct: 74  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH---SKRVIHR 130

Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN----SSAYVAPETKESKDITEKGDIY 861
           D+ P  +++       L+++  G +    S        +  Y+ PE  E +   EK D++
Sbjct: 131 DIKPENLLLG--SAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLW 188

Query: 862 GFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVE 921
             G++  + L GK P    F  +     + R    +     +V                 
Sbjct: 189 SLGVLCYEFLVGKPP----FEANTYQETYKRISRVEFTFPDFVTE--------------G 230

Query: 922 IMNLALHCTAGDPTARPCASDV 943
             +L       +P+ RP   +V
Sbjct: 231 ARDLISRLLKHNPSQRPMLREV 252

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 5e-27
 Identities = 44/289 (15%), Positives = 91/289 (31%), Gaps = 50/289 (17%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVK-KIIDVNTITTS--SFWPDVSQFGKLIMHPNIVRLHG 748
           G+       K R   + ++     K +           F  ++    KL  HPNI+ L G
Sbjct: 19  GEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLG 78

Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRN-------------------LSWERRRKVAIGIAK 789
            C      YL  EY     L + LR                    LS ++    A  +A+
Sbjct: 79  ACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVAR 138

Query: 790 ALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS-----AYV 844
               + +      +  D++   ++V   +    +++  GL+   +     +       ++
Sbjct: 139 G---MDYLSQKQFIHRDLAARNILVG--ENYVAKIADFGLSRGQEVYVKKTMGRLPVRWM 193

Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWV 904
           A E+      T   D++ +G++L ++++                      Y         
Sbjct: 194 AIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTP-----------------YCGMTCAELY 236

Query: 905 DPFIRGHVSSIQNEIV-EIMNLALHCTAGDPTARPCASDVTKTLESCFR 952
           +   +G+          E+ +L   C    P  RP  + +  +L     
Sbjct: 237 EKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLE 285

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 7e-27
 Identities = 48/273 (17%), Positives = 103/273 (37%), Gaps = 42/273 (15%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+   S+    R LA   ++ +K I++   I   +  P V++   ++    HP  V+L+ 
Sbjct: 17  GEGSFSTVVLARELATSREYAIK-ILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 75

Query: 749 VCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAG 805
             + ++  Y    Y +  EL + +    +      R     I  AL +LH      ++  
Sbjct: 76  TFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHR 132

Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA--------YVAPETKESKDITEK 857
           D+ P  ++++  ++ H++++  G A     +S  + A        YV+PE    K   + 
Sbjct: 133 DLKPENILLN--EDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKS 190

Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI 915
            D++  G I+  L+ G  P  A  ++ + + I++              ++          
Sbjct: 191 SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIK--------------LEYDFPEKFFP- 235

Query: 916 QNEIVEIMNLALHCTAGDPTARPCASDVTKTLE 948
                +  +L       D T R    ++     
Sbjct: 236 -----KARDLVEKLLVLDATKRLGCEEMEGYGP 263

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  109 bits (273), Expect = 1e-26
 Identities = 53/263 (20%), Positives = 88/263 (33%), Gaps = 30/263 (11%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           G    S               +K I             +       I HPNIV L  +  
Sbjct: 18  GTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYE 77

Query: 752 SEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVS 808
           S    YL+ + + G EL + +      +     ++   +  A+++LH      +V  D+ 
Sbjct: 78  SGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLG---IVHRDLK 134

Query: 809 PGKVIVDGKDEP-HLRLSVPGLAYCTDSKSINSS-----AYVAPETKESKDITEKGDIYG 862
           P  ++    DE   + +S  GL+   D  S+ S+      YVAPE    K  ++  D + 
Sbjct: 135 PENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWS 194

Query: 863 FGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIV 920
            G+I   LL G  P   + D  + E I++           +   D      +S       
Sbjct: 195 IGVIAYILLCGYPPFYDENDAKLFEQILKA----------EYEFDSPYWDDISD------ 238

Query: 921 EIMNLALHCTAGDPTARPCASDV 943
              +   H    DP  R      
Sbjct: 239 SAKDFIRHLMEKDPEKRFTCEQA 261

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  108 bits (271), Expect = 2e-26
 Identities = 63/303 (20%), Positives = 114/303 (37%), Gaps = 14/303 (4%)

Query: 109 SNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVL 168
              LR +  S+      VP        +LDL NN ++     +  +   L  L L  N +
Sbjct: 9   QCHLRVVQCSDLGLEK-VPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 169 VGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLT 228
               P + + +  L+   L+ NQL     +    L+ L+        +   +   +  + 
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 229 SLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYL 288
            +  L       +G    +F  +  L Y+ +    +T +IP+ +    SL    L  N +
Sbjct: 128 VV-ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKI 183

Query: 289 SGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQN 348
           +      +  L NL  L L  N+ +     SLA+ P L+ L L +N+   ++P  L    
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK 242

Query: 349 NLTVIDLSTNFLTGKIPETLCDSG------SLFKLILFSNSLEGK--IPNSLSTCKSLRR 400
            + V+ L  N ++       C  G      S   + LFSN ++     P++         
Sbjct: 243 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 302

Query: 401 VRL 403
           V+L
Sbjct: 303 VQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  107 bits (268), Expect = 3e-26
 Identities = 55/275 (20%), Positives = 106/275 (38%), Gaps = 13/275 (4%)

Query: 189 SNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSF 248
           S+  +  +P+++    +   + L  N ++     +  +L +L+ L L+ N ++   P +F
Sbjct: 18  SDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75

Query: 249 GNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLF 308
             L  L  L+L +N+L     K    L+ L   +     +   +   + Q+  +E L   
Sbjct: 76  APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTN 134

Query: 309 SNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETL 368
               +G    +   M KL  +++     +  IP  L    +LT + L  N +T     +L
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKVDAASL 191

Query: 369 CDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDIS 428
               +L KL L  NS+      SL+    LR + L NN+L            +   + + 
Sbjct: 192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV-VYLH 250

Query: 429 GNDLSG------RIGEQKWEMTSLQMLNLAGNNFS 457
            N++S              +  S   ++L  N   
Sbjct: 251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  105 bits (261), Expect = 3e-25
 Identities = 60/330 (18%), Positives = 101/330 (30%), Gaps = 50/330 (15%)

Query: 219 EIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSL 278
           ++PK++        LDL  N +T      F NL NL  L L  NK++   P +   L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 279 VSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSG 338
               LS N L     +    LQ L +           + + L  M  ++ L     + SG
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSG 140

Query: 339 EIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSL 398
                      L+ I ++   +T                          IP  L    SL
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-------------------------TIPQGL--PPSL 173

Query: 399 RRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSG 458
             + L  N+++   ++    L  +  L +S N +S            L+ L+L  N    
Sbjct: 174 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 233

Query: 459 KLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLV 518
                     ++ + L  N  S      F                    P   +      
Sbjct: 234 VPGGLADHKYIQVVYLHNNNISAIGSNDF------------------CPPGYNTKKASYS 275

Query: 519 SLDLSNNQLSGH--IPASLSEMPVLGQLDL 546
            + L +N +      P++   + V   + L
Sbjct: 276 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  100 bits (248), Expect = 2e-23
 Identities = 58/281 (20%), Positives = 111/281 (39%), Gaps = 16/281 (5%)

Query: 85  PHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--IGSLSRLEILDLSNN 142
           P    ++L +N+++  I    F +  +L  L L NN  +   P     L +LE L LS N
Sbjct: 31  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 143 MLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQ 202
            L     +   +   L+V +     +   +   ++ +  +++ T    +  G        
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGAFQG 148

Query: 203 LRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQN 262
           ++ L +I +   N++  IP+ +    SL  L L  N +T     S   L+NL  L L  N
Sbjct: 149 MKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 263 KLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTG------KI 316
            ++     S+     L    L++N L  ++P  +   + +++++L +NN +         
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 317 PSSLASMPKLQVLQLWSN--QFSGEIPSNLGKQNNLTVIDL 355
           P           + L+SN  Q+    PS          + L
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.3 bits (220), Expect = 6e-20
 Identities = 55/276 (19%), Positives = 97/276 (35%), Gaps = 34/276 (12%)

Query: 339 EIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSL 398
           ++P +L    +  ++DL  N +T        +  +L  LIL +N +    P + +    L
Sbjct: 24  KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 399 RRVRLQNNRLS---------------------GELSSEFTRLPLVYFLDISG--NDLSGR 435
            R+ L  N+L                          S F  L  +  +++       SG 
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 436 IGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQ 495
                  M  L  + +A  N +  +P       L  L L  N+ +     S   L+ L +
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT-TIPQGLPP-SLTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 496 LKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSG-- 553
           L +S N +       L++   L  L L+NN+L   +P  L++   +  + L  N +S   
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 258

Query: 554 ----KIPQTLGRVASLVQVNISHNHFHGSLPSTGAF 585
                 P    + AS   V++  N           F
Sbjct: 259 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 294

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.2 bits (204), Expect = 7e-18
 Identities = 53/261 (20%), Positives = 98/261 (37%), Gaps = 6/261 (2%)

Query: 349 NLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRL 408
           +L V+  S   L  K+P+ L        L L +N +           K+L  + L NN++
Sbjct: 11  HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 409 SGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQ 468
           S      F  L  +  L +S N L     +    +  L++           + +      
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 469 LENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLS 528
           +  L  +  + SG    +F  + +L  ++I+   +   IP+ L     L  L L  N+++
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKIT 184

Query: 529 GHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAFLAI 588
               ASL  +  L +L LS N +S     +L     L ++++++N              I
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 244

Query: 589 NATAVAGNDLCGGDSTSGLPP 609
               +  N++    S    PP
Sbjct: 245 QVVYLHNNNISAIGSNDFCPP 265

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 22/164 (13%), Positives = 48/164 (29%), Gaps = 6/164 (3%)

Query: 9   MFLFLSFCTCHGAELELLLSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIEL 68
           +F  L+           L S                  +       I       +  + L
Sbjct: 119 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL 178

Query: 69  SAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPI 128
               I+   ++S+  L ++  + LS N +S      + ++ +       +N     P  +
Sbjct: 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

Query: 129 GSLSRLEILDLSNNMLSG------KIPEEIGSFSGLKVLDLGGN 166
                ++++ L NN +S         P      +    + L  N
Sbjct: 239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 2e-26
 Identities = 53/303 (17%), Positives = 99/303 (32%), Gaps = 54/303 (17%)

Query: 661 WEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN 720
           WE+        +SL ++  +           G+      +      N    V  K +   
Sbjct: 12  WEIPR------ESLRLEVKL-----------GQGCFGEVWMGTW--NGTTRVAIKTLKPG 52

Query: 721 TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN-----L 775
           T++  +F  +     KL  H  +V+L+ V   E   Y+V EY+    L + L+      L
Sbjct: 53  TMSPEAFLQEAQVMKKL-RHEKLVQLYAVVSEEPI-YIVTEYMSKGSLLDFLKGETGKYL 110

Query: 776 SWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS 835
              +   +A  IA  + ++        V  D+    ++V   +    +++  GLA   + 
Sbjct: 111 RLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVG--ENLVCKVADFGLARLIED 165

Query: 836 KSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIV 888
               +         + APE       T K D++ FG++L +L T            E + 
Sbjct: 166 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVL- 224

Query: 889 EWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE 948
                      ++                    + +L   C   +P  RP    +   LE
Sbjct: 225 ---------DQVERGYRMPCPPECPE------SLHDLMCQCWRKEPEERPTFEYLQAFLE 269

Query: 949 SCF 951
             F
Sbjct: 270 DYF 272

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 4e-26
 Identities = 45/263 (17%), Positives = 98/263 (37%), Gaps = 32/263 (12%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           G+      ++    ++  +  + K + V          ++     +  H NI+ LH    
Sbjct: 14  GRGEFGIVHRCVETSSK-KTYMAKFVKVKGTDQVLVKKEI-SILNIARHRNILHLHESFE 71

Query: 752 SEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDV 807
           S +   +++E+I G ++ E +      L+          + +AL+FLH   S ++   D+
Sbjct: 72  SMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDI 128

Query: 808 SPGKVIVDGKDEPHLRLSVPGLA-----YCTDSKSINSSAYVAPETKESKDITEKGDIYG 862
            P  +I   +    +++   G A              +  Y APE  +   ++   D++ 
Sbjct: 129 RPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWS 188

Query: 863 FGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIV 920
            G ++  LL+G +P  A+ +  + E+I+            +   D      +S       
Sbjct: 189 LGTLVYVLLSGINPFLAETNQQIIENIMNA----------EYTFDEEAFKEISI------ 232

Query: 921 EIMNLALHCTAGDPTARPCASDV 943
           E M+        +  +R  AS+ 
Sbjct: 233 EAMDFVDRLLVKERKSRMTASEA 255

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (267), Expect = 5e-26
 Identities = 40/260 (15%), Positives = 89/260 (34%), Gaps = 29/260 (11%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           G+    + Y    +A   +  ++++             ++    +   +PNIV       
Sbjct: 29  GQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEI-LVMRENKNPNIVNYLDSYL 87

Query: 752 SEKAAYLVYEYIEGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSP 809
                ++V EY+ G  L++V+    +   +   V     +AL FLH +    V+  D+  
Sbjct: 88  VGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKS 144

Query: 810 GKVIVDGKDEPHLRLSVPGLA------YCTDSKSINSSAYVAPETKESKDITEKGDIYGF 863
             +++       ++L+  G            S  + +  ++APE    K    K DI+  
Sbjct: 145 DNILLGMDG--SVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL 202

Query: 864 GLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIM 923
           G++ I+++ G+ P   +     ++   A     +      +                   
Sbjct: 203 GIMAIEMIEGEPPYLNE-NPLRALYLIATNGTPELQNPEKLSA--------------IFR 247

Query: 924 NLALHCTAGDPTARPCASDV 943
           +    C   D   R  A ++
Sbjct: 248 DFLNRCLDMDVEKRGSAKEL 267

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 7e-26
 Identities = 39/229 (17%), Positives = 82/229 (35%), Gaps = 36/229 (15%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALR 792
           + + +P IVR+ G+C +E    LV E  E   L++ L   R++  +   ++   ++  ++
Sbjct: 63  QQLDNPYIVRMIGICEAESW-MLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMK 121

Query: 793 FLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSA---------Y 843
           +L        V  D++   V++  +   + ++S  GL+    +      A         +
Sbjct: 122 YLEESN---FVHRDLAARNVLLVTQH--YAKISDFGLSKALRADENYYKAQTHGKWPVKW 176

Query: 844 VAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTW 903
            APE       + K D++ FG+++ +  +                      Y        
Sbjct: 177 YAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKP-----------------YRGMKGSEV 219

Query: 904 VDPFIRGHVSSIQNEIV-EIMNLALHCTAGDPTARPCASDVTKTLESCF 951
                +G           E+ +L   C   D   RP  + V   L + +
Sbjct: 220 TAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYY 268

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 8e-26
 Identities = 50/296 (16%), Positives = 92/296 (31%), Gaps = 56/296 (18%)

Query: 692 GKKGVSSSYKVRSLAND----MQFVVKKIIDVNTITT--SSFWPDVSQFGKLIMHPNIVR 745
           G           +           V  K++     ++   +   ++    +L  H NIV 
Sbjct: 46  GSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVN 105

Query: 746 LHGVCRSEKAAYLVYEYIEGKELSEVLRN--------------------------LSWER 779
           L G C      YL++EY    +L   LR+                          L++E 
Sbjct: 106 LLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFED 165

Query: 780 RRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL------RLSVPGLAYCT 833
               A  +AK + FL      S V  D++   V+V       +      R  +    Y  
Sbjct: 166 LLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVV 222

Query: 834 DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARY 893
              +     ++APE+      T K D++ +G++L ++ +          V  +  +    
Sbjct: 223 RGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYK---- 278

Query: 894 CYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES 949
                 +          + +       EI  +   C A D   RP   ++T  L  
Sbjct: 279 -----LIQNGFKMDQPFYATE------EIYIIMQSCWAFDSRKRPSFPNLTSFLGC 323

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 2e-25
 Identities = 48/309 (15%), Positives = 100/309 (32%), Gaps = 54/309 (17%)

Query: 664 QFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT 723
           +F        + I+++I           G                 + +   I  + +  
Sbjct: 18  EFAKEIDISCVKIEQVI-----------GAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66

Query: 724 TSSFWPDVS---QFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LS 776
           T     D            HPN++ L GV        ++ E++E   L   LR      +
Sbjct: 67  TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFT 126

Query: 777 WERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA------ 830
             +   +  GIA  +++L        V  D++   ++V+       ++S  GL+      
Sbjct: 127 VIQLVGMLRGIAAGMKYLADMN---YVHRDLAARNILVN--SNLVCKVSDFGLSRFLEDD 181

Query: 831 -----YCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVH 884
                Y +         + APE  + +  T   D++ +G+++ ++++ G+ P        
Sbjct: 182 TSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERP-------- 233

Query: 885 ESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIV-EIMNLALHCTAGDPTARPCASDV 943
                     Y D      ++   + +      +    +  L L C   D   RP    +
Sbjct: 234 ----------YWDMTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQI 283

Query: 944 TKTLESCFR 952
             TL+   R
Sbjct: 284 VNTLDKMIR 292

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  104 bits (260), Expect = 2e-25
 Identities = 55/275 (20%), Positives = 107/275 (38%), Gaps = 36/275 (13%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDV---SQFGKLIMHPNIVRLHG 748
           G  G+S  +  R L       VK ++  +     SF+      +Q    + HP IV ++ 
Sbjct: 16  GFGGMSEVHLARDLRLHRDVAVK-VLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYD 74

Query: 749 VCRSEKAA----YLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPS 801
              +E  A    Y+V EY++G  L +++     ++ +R  +V     +A   L+F     
Sbjct: 75  TGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQA---LNFSHQNG 131

Query: 802 VVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN-------SSAYVAPETKESKDI 854
           ++  DV P  +++   +   +       A      S+        ++ Y++PE      +
Sbjct: 132 IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSV 191

Query: 855 TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS 914
             + D+Y  G +L ++LTG+ P        +S V  A   Y     D          +S+
Sbjct: 192 DARSDVYSLGCVLYEVLTGEPPFTG-----DSPVSVA---YQHVREDPIPPSARHEGLSA 243

Query: 915 IQNEIVEIMNLALHCTAGDPTARP-CASDVTKTLE 948
                 ++  + L   A +P  R   A+++   L 
Sbjct: 244 ------DLDAVVLKALAKNPENRYQTAAEMRADLV 272

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 3e-25
 Identities = 53/333 (15%), Positives = 103/333 (30%), Gaps = 71/333 (21%)

Query: 657 EDGIWEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSL------ANDMQ 710
           ED  WE+      +GK L                 G+          ++       N + 
Sbjct: 4   EDPRWELPRDRLVLGKPL-----------------GEGAFGQVVLAEAIGLDKDKPNRVT 46

Query: 711 FVVKKIIDVNTITT--SSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKEL 768
            V  K++  +      S    ++     +  H NI+ L G C  +   Y++ EY     L
Sbjct: 47  KVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNL 106

Query: 769 SEVLRN-------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSP 809
            E L+                    LS +     A  +A+    + +  S   +  D++ 
Sbjct: 107 REYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARG---MEYLASKKCIHRDLAA 163

Query: 810 GKVIVDGKDEPHL------RLSVPGLAYCTDSKSINSSAYVAPETKESKDITEKGDIYGF 863
             V+V   +   +      R       Y   +       ++APE    +  T + D++ F
Sbjct: 164 RNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSF 223

Query: 864 GLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIV-EI 922
           G++L ++ T                      Y    ++        GH     +    E+
Sbjct: 224 GVLLWEIFTLGGS-----------------PYPGVPVEELFKLLKEGHRMDKPSNCTNEL 266

Query: 923 MNLALHCTAGDPTARPCASDVTKTLESCFRISS 955
             +   C    P+ RP    + + L+    ++S
Sbjct: 267 YMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTS 299

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 3e-25
 Identities = 53/267 (19%), Positives = 99/267 (37%), Gaps = 33/267 (12%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           G        ++ +     +F +K + D           +V    +    P+IVR+  V  
Sbjct: 21  GLGINGKVLQIFNKRTQEKFALKMLQDCPKARR-----EVELHWRASQCPHIVRIVDVYE 75

Query: 752 S----EKAAYLVYEYIEGKELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSV 802
           +     K   +V E ++G EL   +++      +     ++   I +A+++LH   S ++
Sbjct: 76  NLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINI 132

Query: 803 VAGDVSPGKVIVDGKDEP-HLRLSVPGLAYCTDSKS-----INSSAYVAPETKESKDITE 856
              DV P  ++   K     L+L+  G A  T S +       +  YVAPE    +   +
Sbjct: 133 AHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDK 192

Query: 857 KGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ 916
             D++  G+I+  LL G  P  ++ G+  S     R                   VS   
Sbjct: 193 SCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWS----EVSE-- 246

Query: 917 NEIVEIMNLALHCTAGDPTARPCASDV 943
               E+  L  +    +PT R   ++ 
Sbjct: 247 ----EVKMLIRNLLKTEPTQRMTITEF 269

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 1e-24
 Identities = 48/265 (18%), Positives = 93/265 (35%), Gaps = 28/265 (10%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQF------GKLIMHPNIVR 745
           G    +   K R  +  +Q+  K  I      +S                K I HPN++ 
Sbjct: 19  GSGQFAVVKKCREKSTGLQYAAK-FIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 77

Query: 746 LHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAG 805
           LH V  ++    L+ E + G EL + L         +    + + L  +++  S  +   
Sbjct: 78  LHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHF 137

Query: 806 DVSPGKVIVD--GKDEPHLRLSVPGLAYCTDSKS-----INSSAYVAPETKESKDITEKG 858
           D+ P  +++      +P +++   GLA+  D  +       +  +VAPE    + +  + 
Sbjct: 138 DLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEA 197

Query: 859 DIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNE 918
           D++  G+I   LL+G SP   D               +   ++   +     + S+    
Sbjct: 198 DMWSIGVITYILLSGASPFLGD--------TKQETLANVSAVNYEFEDEYFSNTSA---- 245

Query: 919 IVEIMNLALHCTAGDPTARPCASDV 943
                +        DP  R    D 
Sbjct: 246 --LAKDFIRRLLVKDPKKRMTIQDS 268

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (253), Expect = 2e-24
 Identities = 62/268 (23%), Positives = 106/268 (39%), Gaps = 3/268 (1%)

Query: 102 PSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVL 161
           P      +      +         VP+G  +  + + L  N +S        +   L +L
Sbjct: 3   PGACVCYNEPKVTTSCPQQGLQA-VPVGIPAASQRIFLHGNRISHVPAASFRACRNLTIL 61

Query: 162 DLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSI-PREIGQLRNLKWIYLGYNNLSGEI 220
            L  NVL      + + +  L+   L+ N  + S+ P     L  L  ++L    L    
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 221 PKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVS 280
           P     L +L +L L  N L      +F +L NL +LFL+ N+++    ++  GL SL  
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 281 FDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEI 340
             L  N ++   P     L  L  L+LF+NN +     +LA +  LQ L+L  N +  + 
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 341 PSNLGKQNNLTVIDLSTNFLTGKIPETL 368
                    L     S++ +   +P+ L
Sbjct: 242 R-ARPLWAWLQKFRGSSSEVPCSLPQRL 268

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.9 bits (247), Expect = 1e-23
 Identities = 55/285 (19%), Positives = 93/285 (32%), Gaps = 17/285 (5%)

Query: 232 HLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGE 291
                   L   +P      +  + +FL+ N+++     S    ++L    L  N L+  
Sbjct: 15  TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 292 IPEEVIQLQNLEILHLFSNNFTGKI-PSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNL 350
                  L  LE L L  N     + P++   + +L  L L         P        L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 351 TVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSG 410
             + L  N L     +T  D G+L  L L  N +      +     SL R+ L  NR++ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 411 ELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLE 470
                F  L  +  L +  N+LS    E    + +LQ L L  N +            L+
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251

Query: 471 NLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDI-PEELSSC 514
               S +    ++P+                +    +   +L  C
Sbjct: 252 KFRGSSSEVPCSLPQRL------------AGRDLKRLAANDLQGC 284

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.0 bits (229), Expect = 3e-21
 Identities = 60/286 (20%), Positives = 99/286 (34%), Gaps = 12/286 (4%)

Query: 56  SCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFL 115
            C N   V       + +   +   I      + I L  N++S  +P+  F +  +L  L
Sbjct: 7   VCYNEPKVT-TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISH-VPAASFRACRNLTIL 61

Query: 116 NLSNNNFTGPVPIGSLSRLEILDLSNNM---LSGKIPEEIGSFSGLKVLDLGGNVLVGEI 172
            L +N               +  L  +    L    P        L  L L    L    
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 173 PLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNH 232
           P     + +LQ   L  N L          L NL  ++L  N +S    +    L SL+ 
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 233 LDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEI 292
           L L  N +    P +F +L  L  L+L+ N L+    +++  L++L    L+DN    + 
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 293 PEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSG 338
                    L+     S+     +P  LA      + +L +N   G
Sbjct: 242 R-ARPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 2e-11
 Identities = 46/253 (18%), Positives = 91/253 (35%), Gaps = 5/253 (1%)

Query: 348 NNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNR 407
                       L   +P  +    +  ++ L  N +      S   C++L  + L +N 
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 408 LSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWE-MTSLQMLNLAGNNFSGKLPDSFGS 466
           L+   ++ FT L L+  LD+S N     +    +  +  L  L+L         P  F  
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 467 -DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNN 525
              L+ L L +N        +F  L  L  L +  N++             L  L L  N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 526 QLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAF 585
           +++   P +  ++  L  L L  N LS    + L  + +L  + ++ N +     +   +
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW 247

Query: 586 LAINATAVAGNDL 598
             +     + +++
Sbjct: 248 AWLQKFRGSSSEV 260

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 4e-24
 Identities = 53/278 (19%), Positives = 107/278 (38%), Gaps = 39/278 (14%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM---HPNIVRLHG 748
           G+      Y    L ND + +   +  +N IT           G ++    HPN++ L G
Sbjct: 36  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLG 95

Query: 749 VC-RSEKAAYLVYEYIEGKELSEVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSVV 803
           +C RSE +  +V  Y++  +L   +     N + +      + +AK +    F  S   V
Sbjct: 96  ICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM---KFLASKKFV 152

Query: 804 AGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS----------AYVAPETKESKD 853
             D++    ++D  ++  ++++  GLA     K  +S            ++A E+ +++ 
Sbjct: 153 HRDLAARNCMLD--EKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQK 210

Query: 854 ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS 913
            T K D++ FG++L +L+T  +P   D     +  +   Y                 +  
Sbjct: 211 FTTKSDVWSFGVLLWELMTRGAPPYPD----VNTFDITVYLLQGRR------LLQPEYCP 260

Query: 914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCF 951
                   +  + L C       RP  S++   + + F
Sbjct: 261 D------PLYEVMLKCWHPKAEMRPSFSELVSRISAIF 292

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =   99 bits (248), Expect = 2e-23
 Identities = 49/297 (16%), Positives = 100/297 (33%), Gaps = 61/297 (20%)

Query: 692 GKKGVSSSYKVRSLA----NDMQFVVKKIIDVNTIT--TSSFWPDVSQFGKLIMHPNIVR 745
           G+      ++ R+           V  K++         + F  + +   +   +PNIV+
Sbjct: 22  GEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEF-DNPNIVK 80

Query: 746 LHGVCRSEKAAYLVYEYIEGKELSEVLRN---------------------------LSWE 778
           L GVC   K   L++EY+   +L+E LR+                           LS  
Sbjct: 81  LLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCA 140

Query: 779 RRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL------RLSVPGLAYC 832
            +  +A  +A  + +L        V  D++    +V       +      R       Y 
Sbjct: 141 EQLCIARQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYK 197

Query: 833 TDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWAR 892
            D        ++ PE+      T + D++ +G++L ++ +                    
Sbjct: 198 ADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQ---------------- 241

Query: 893 YCYSDCHLDTWVDPFIRGHVSSI-QNEIVEIMNLALHCTAGDPTARPCASDVTKTLE 948
             Y     +  +     G++ +  +N  +E+ NL   C +  P  RP    + + L+
Sbjct: 242 -PYYGMAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQ 297

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.7 bits (245), Expect = 2e-23
 Identities = 51/304 (16%), Positives = 107/304 (35%), Gaps = 53/304 (17%)

Query: 661 WEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN 720
           +E+Q       + + +   I           G+      ++   ++ +   +   I    
Sbjct: 2   YEIQR------ERIELGRCI-----------GEGQFGDVHQGIYMSPENPALAVAIKTCK 44

Query: 721 TITTSSFWPDVSQFGKLIM---HPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN--- 774
             T+ S      Q    +    HP+IV+L GV  +E   +++ E     EL   L+    
Sbjct: 45  NCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQVRKY 103

Query: 775 -LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT 833
            L        A  ++ AL +L    S   V  D++   V+V   D   ++L   GL+   
Sbjct: 104 SLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSND--CVKLGDFGLSRYM 158

Query: 834 DSKSINSS-------AYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHES 886
           +  +   +        ++APE+   +  T   D++ FG+ + ++L            ++ 
Sbjct: 159 EDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDV 218

Query: 887 IVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT 946
           I            ++      +  +          + +L   C A DP+ RP  +++   
Sbjct: 219 I----------GRIENGERLPMPPNCPP------TLYSLMTKCWAYDPSRRPRFTELKAQ 262

Query: 947 LESC 950
           L + 
Sbjct: 263 LSTI 266

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 97.4 bits (242), Expect = 8e-23
 Identities = 49/275 (17%), Positives = 98/275 (35%), Gaps = 42/275 (15%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSS---------FWPDVSQFGKLIMHPN 742
           G+   S   +        ++ VK I      + S+            +V    K+  HPN
Sbjct: 12  GRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPN 71

Query: 743 IVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCS 799
           I++L     +    +LV++ ++  EL + L     LS +  RK+   + + +  LH    
Sbjct: 72  IIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLN- 130

Query: 800 PSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS-----AYVAPE------T 848
             +V  D+ P  +++D  D+ +++L+  G +   D            +Y+APE       
Sbjct: 131 --IVHRDLKPENILLD--DDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMN 186

Query: 849 KESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI 908
                  ++ D++  G+I+  LL G  P    F   + ++        +    +      
Sbjct: 187 DNHPGYGKEVDMWSTGVIMYTLLAGSPP----FWHRKQMLMLRMIMSGNYQFGSPEWD-- 240

Query: 909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
               S        + +L        P  R  A + 
Sbjct: 241 --DYSD------TVKDLVSRFLVVQPQKRYTAEEA 267

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.5 bits (242), Expect = 2e-22
 Identities = 43/263 (16%), Positives = 89/263 (33%), Gaps = 35/263 (13%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKI---IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHG 748
           GK      +       +  F +K +   + +          +         HP +  +  
Sbjct: 11  GKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFC 70

Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAG 805
             ++++  + V EY+ G +L   +++       R    A  I   L+FLH      +V  
Sbjct: 71  TFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKG---IVYR 127

Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLA------YCTDSKSINSSAYVAPETKESKDITEKGD 859
           D+    +++D   + H++++  G+           +    +  Y+APE    +      D
Sbjct: 128 DLKLDNILLD--KDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVD 185

Query: 860 IYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEI 919
            + FG++L ++L G+SP            E       D       +PF    +       
Sbjct: 186 WWSFGVLLYEMLIGQSPFHGQ-----DEEELFHSIRMD-------NPFYPRWLEK----- 228

Query: 920 VEIMNLALHCTAGDPTARPCASD 942
            E  +L +     +P  R     
Sbjct: 229 -EAKDLLVKLFVREPEKRLGVRG 250

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.7 bits (237), Expect = 3e-22
 Identities = 44/228 (19%), Positives = 81/228 (35%), Gaps = 30/228 (13%)

Query: 736 KLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKAL 791
               H NI+RL GV    K   ++ EY+E   L + LR      S  +   +  GIA   
Sbjct: 64  GQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAG- 122

Query: 792 RFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL-------RLSVPGLAYCTDSKSINSSAYV 844
             + +  + + V  D++   ++V+      +        L     A  T S       + 
Sbjct: 123 --MKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWT 180

Query: 845 APETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWV 904
           APE    +  T   D++ FG+++ +++T       +   HE              +   +
Sbjct: 181 APEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHE--------------VMKAI 226

Query: 905 DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR 952
           +   R       +    I  L + C   +   RP  +D+   L+   R
Sbjct: 227 NDGFRLPTPM--DCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIR 272

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.8 bits (235), Expect = 5e-22
 Identities = 47/269 (17%), Positives = 91/269 (33%), Gaps = 46/269 (17%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM--------HPNI 743
           G  G  S Y    +++++   +K  ++ + I+     P+ ++    ++           +
Sbjct: 13  GSGGFGSVYSGIRVSDNLPVAIK-HVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGV 71

Query: 744 VRLHGVCRSEKAAYLVYEYIEGKELSEVL----RNLSWERRRKVAIGIAKALRFLHFHCS 799
           +RL        +  L+ E  E  +           L  E  R     + +A+R  H    
Sbjct: 72  IRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCG- 130

Query: 800 PSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSIN----SSAYVAPE-TKESKDI 854
             V+  D+    +++D  +   L+L   G               +  Y  PE  +  +  
Sbjct: 131 --VLHRDIKDENILID-LNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYH 187

Query: 855 TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS 914
                ++  G++L D++ G  P    F   E I+                  F R  VSS
Sbjct: 188 GRSAAVWSLGILLYDMVCGDIP----FEHDEEIIRG--------------QVFFRQRVSS 229

Query: 915 IQNEIVEIMNLALHCTAGDPTARPCASDV 943
                 E  +L   C A  P+ RP   ++
Sbjct: 230 ------ECQHLIRWCLALRPSDRPTFEEI 252

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (233), Expect = 8e-22
 Identities = 39/275 (14%), Positives = 87/275 (31%), Gaps = 39/275 (14%)

Query: 692 GKKGVSSSYKVR--SLANDMQFVVKKIIDVNTITTSSFWPDVS---QFGKLIMHPNIVRL 746
           G        +    + +     V  K +  + ++      D          + H N++RL
Sbjct: 17  GDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRL 76

Query: 747 HGVCRSEKAAYLVYEYIEGKELSEVL----RNLSWERRRKVAIGIAKALRFLHFHCSPSV 802
           +GV  +     +V E      L + L     +       + A+ +A+ + +L    S   
Sbjct: 77  YGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE---SKRF 132

Query: 803 VAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS---------AYVAPETKESKD 853
           +  D++   +++  +D   +++   GL         +           A+ APE+ +++ 
Sbjct: 133 IHRDLAARNLLLATRD--LVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRT 190

Query: 854 ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS 913
            +   D + FG+ L ++ T            + +                          
Sbjct: 191 FSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQIL---------HKIDKEGERLPRPEDCP 241

Query: 914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLE 948
                  +I N+ + C A  P  RP    +   L 
Sbjct: 242 Q------DIYNVMVQCWAHKPEDRPTFVALRDFLL 270

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 93.8 bits (232), Expect = 2e-21
 Identities = 30/278 (10%), Positives = 75/278 (26%), Gaps = 32/278 (11%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           G       Y    +A   +  +K               +   +  +     I  +     
Sbjct: 16  GSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIYKMMQGGVGIPTIRWCGA 73

Query: 752 SEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVS 808
                 +V E +            R  S +    +A  +   + ++H     + +  DV 
Sbjct: 74  EGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVK 130

Query: 809 PGKVIVDGKDEPHLRLSVP--------------GLAYCTDSKSINSSAYVAPETKESKDI 854
           P   ++    + +L   +                + Y  +     ++ Y +  T    + 
Sbjct: 131 PDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQ 190

Query: 855 TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS 914
           + + D+   G +L+    G  P    +   ++  +  +Y        +     +     S
Sbjct: 191 SRRDDLESLGYVLMYFNLGSLP----WQGLKAATKRQKYERISEKKMSTPIEVLCKGYPS 246

Query: 915 IQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR 952
                 E       C +     +P  S + +   + F 
Sbjct: 247 ------EFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH 278

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.6 bits (232), Expect = 2e-21
 Identities = 45/260 (17%), Positives = 94/260 (36%), Gaps = 29/260 (11%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKII--DVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV 749
           G       + +RS  N   + +K +    V  +       D      ++ HP I+R+ G 
Sbjct: 13  GTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGT 72

Query: 750 CRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSP 809
            +  +  +++ +YIEG EL  +LR              A+    L +  S  ++  D+ P
Sbjct: 73  FQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKP 132

Query: 810 GKVIVDGKDEPHLRLSVPGLAYCTDSK---SINSSAYVAPETKESKDITEKGDIYGFGLI 866
             +++D     H++++  G A            +  Y+APE   +K   +  D + FG++
Sbjct: 133 ENILLD--KNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGIL 190

Query: 867 LIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMN 924
           + ++L G +P         +E I+        +     + +               ++ +
Sbjct: 191 IYEMLAGYTPFYDSNTMKTYEKILNA------ELRFPPFFNE--------------DVKD 230

Query: 925 LALHCTAGDPTARPCASDVT 944
           L       D + R       
Sbjct: 231 LLSRLITRDLSQRLGNLQNG 250

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 94.1 bits (233), Expect = 3e-21
 Identities = 43/218 (19%), Positives = 87/218 (39%), Gaps = 15/218 (6%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           G+   S  ++  ++ N+ + VVK +     +       ++     L   PNI+ L  + +
Sbjct: 44  GRGKYSEVFEAINITNNEKVVVKIL---KPVKKKKIKREIKILENLRGGPNIITLADIVK 100

Query: 752 S--EKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSP 809
               +   LV+E++   +  ++ + L+    R     I KAL + H      ++  DV P
Sbjct: 101 DPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMG---IMHRDVKP 157

Query: 810 GKVIVDGKDEPHLRLSVPGLAYCTDSKS-----INSSAYVAPE-TKESKDITEKGDIYGF 863
             V++D +    LRL   GLA            + S  +  PE   + +      D++  
Sbjct: 158 HNVMIDHEH-RKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSL 216

Query: 864 GLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLD 901
           G +L  ++  K P       ++ +V  A+   ++   D
Sbjct: 217 GCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYD 254

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.0 bits (230), Expect = 3e-21
 Identities = 47/298 (15%), Positives = 105/298 (35%), Gaps = 54/298 (18%)

Query: 692 GKKGVSSSYKVRSLAND----MQFVVKKIIDVNTITTS--SFWPDVSQFGKLIMHPNIVR 745
           G+       +  +   D     + V  K++      +   +   ++     +  H N+V 
Sbjct: 22  GRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN 81

Query: 746 LHGVCRSEKAA-YLVYEYIEGKELSEVLRN-------------------LSWERRRKVAI 785
           L G C        ++ E+ +   LS  LR+                   L+ E     + 
Sbjct: 82  LLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSF 141

Query: 786 GIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA--------YCTDSKS 837
            +AK + FL    S   +  D++   +++   ++  +++   GLA        Y     +
Sbjct: 142 QVAKGMEFLA---SRKCIHRDLAARNILLS--EKNVVKICDFGLARDIYKDPDYVRKGDA 196

Query: 838 INSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD 897
                ++APET   +  T + D++ FG++L ++ +  +       + E            
Sbjct: 197 RLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCR-------- 248

Query: 898 CHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISS 955
             L          + +       E+    L C  G+P+ RP  S++ + L +  + ++
Sbjct: 249 -RLKEGTRMRAPDYTTP------EMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 299

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.6 bits (229), Expect = 4e-21
 Identities = 53/277 (19%), Positives = 101/277 (36%), Gaps = 31/277 (11%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVS----QFGKLIMHPNIVRLH 747
           G+   ++ YK R    +    +KKI   +           +    +  + + HPNI+ L 
Sbjct: 7   GEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLL 66

Query: 748 GVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVA 804
                +    LV++++E      +  N   L+    +   +   + L +LH H    ++ 
Sbjct: 67  DAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHW---ILH 123

Query: 805 GDVSPGKVIVDGKDEPHLRLSVPGLA------YCTDSKSINSSAYVAPET-KESKDITEK 857
            D+ P  +++D  +   L+L+  GLA          +  + +  Y APE    ++     
Sbjct: 124 RDLKPNNLLLD--ENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVG 181

Query: 858 GDIYGFGLILIDLLTGKSP--ADADFGVHESIVE---------WARYCYSDCHLDTWVDP 906
            D++  G IL +LL        D+D      I E         W   C    ++     P
Sbjct: 182 VDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFP 241

Query: 907 FIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
            I  H         ++++L       +P AR  A+  
Sbjct: 242 GIPLH-HIFSAAGDDLLDLIQGLFLFNPCARITATQA 277

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.5 bits (226), Expect = 1e-20
 Identities = 43/317 (13%), Positives = 106/317 (33%), Gaps = 66/317 (20%)

Query: 661 WEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVR-----SLANDMQFVVKK 715
           WEV        + +T+   +           G+      Y+           + +  +K 
Sbjct: 15  WEVAR------EKITMSREL-----------GQGSFGMVYEGVAKGVVKDEPETRVAIKT 57

Query: 716 IIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRN- 774
           + +  ++     + + +   K     ++VRL GV    +   ++ E +   +L   LR+ 
Sbjct: 58  VNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSL 117

Query: 775 ------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHL 822
                        S  +  ++A  IA  + +L    +   V  D++    +V   ++  +
Sbjct: 118 RPAMANNPVLAPPSLSKMIQMAGEIADGMAYL---NANKFVHRDLAARNCMVA--EDFTV 172

Query: 823 RLSVPGL--------AYCTDSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGK 874
           ++   G+         Y    K +    +++PE+ +    T   D++ FG++L ++ T  
Sbjct: 173 KIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLA 232

Query: 875 SPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIV-EIMNLALHCTAGD 933
                               Y     +  +   + G +    +     +  L   C   +
Sbjct: 233 EQP-----------------YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYN 275

Query: 934 PTARPCASDVTKTLESC 950
           P  RP   ++  +++  
Sbjct: 276 PKMRPSFLEIISSIKEE 292

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 89.1 bits (220), Expect = 6e-20
 Identities = 28/282 (9%), Positives = 74/282 (26%), Gaps = 38/282 (13%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           G+      ++  +L N+ Q  +K     +         +   +  L     I  ++   +
Sbjct: 14  GEGSFGVIFEGTNLLNNQQVAIKFEPRRSDA--PQLRDEYRTYKLLAGCTGIPNVYYFGQ 71

Query: 752 SEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVS 808
                 LV + +       +       S +     A  +   ++ +H      +V  D+ 
Sbjct: 72  EGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKS---LVYRDIK 128

Query: 809 PGKVIVDGKDEP---HLRLSVPGLAYCTDSKSIN-------------SSAYVAPETKESK 852
           P   ++   +      + +   G+                       ++ Y++  T   +
Sbjct: 129 PDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGR 188

Query: 853 DITEKGDIYGFGLILIDLLTGKS--PADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG 910
           + + + D+   G + +  L G             +          S           +R 
Sbjct: 189 EQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQS---------TPLRE 239

Query: 911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR 952
             +    E  + M+   +       A P    +         
Sbjct: 240 LCAGFPEEFYKYMH---YARNLAFDATPDYDYLQGLFSKVLE 278

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 90.6 bits (224), Expect = 6e-20
 Identities = 50/261 (19%), Positives = 83/261 (31%), Gaps = 35/261 (13%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM------HPNIVR 745
           G+ G    Y  R       + +K  +D   I              ++        P IV 
Sbjct: 13  GRGGFGEVYGCRKADTGKMYAMK-CLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVC 71

Query: 746 LHGVCRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSV 802
           +     +      + + + G +L   L      S    R  A  I   L  +H   +  V
Sbjct: 72  MSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMH---NRFV 128

Query: 803 VAGDVSPGKVIVDGKDEPHLRLSVPGLA----YCTDSKSINSSAYVAPET-KESKDITEK 857
           V  D+ P  +++D  +  H+R+S  GLA          S+ +  Y+APE  ++       
Sbjct: 129 VYRDLKPANILLD--EHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSS 186

Query: 858 GDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN 917
            D +  G +L  LL G SP        +   E  R   +           +    S    
Sbjct: 187 ADWFSLGCMLFKLLRGHSPFRQH--KTKDKHEIDRMTLTM-------AVELPDSFSP--- 234

Query: 918 EIVEIMNLALHCTAGDPTARP 938
              E+ +L       D   R 
Sbjct: 235 ---ELRSLLEGLLQRDVNRRL 252

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.2 bits (220), Expect = 7e-20
 Identities = 54/278 (19%), Positives = 92/278 (33%), Gaps = 29/278 (10%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWP-----DVSQFGKLIMHPNIVRL 746
           G+      +K R L N  +FV  K + V T              V +  +   HPN+VRL
Sbjct: 16  GEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRL 75

Query: 747 HGVCRSEKAA-----YLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFH 797
             VC   +        LV+E+++    + + +     +  E  + +   + + L FLH H
Sbjct: 76  FDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH 135

Query: 798 CSPSVVAGDVSPGKVIVDGKDEP---HLRLSVPGLAYCTDSKSINSSAYVAPETKESKDI 854
               VV  D+ P  ++V    +       L+         +  + +  Y APE       
Sbjct: 136 R---VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSY 192

Query: 855 TEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV 912
               D++  G I  ++   K      +D      I++       +        P    H 
Sbjct: 193 ATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHS 252

Query: 913 SSIQNEIV-------EIMNLALHCTAGDPTARPCASDV 943
            S Q              +L L C   +P  R  A   
Sbjct: 253 KSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSA 290

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.8 bits (219), Expect = 1e-19
 Identities = 53/275 (19%), Positives = 96/275 (34%), Gaps = 28/275 (10%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKI-IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVC 750
           G+      YK R+        +KKI +D  T    S         K + HPNIV+L  V 
Sbjct: 11  GEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVI 70

Query: 751 RSEKAAYLVYEYIEGKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGD 806
            +E   YLV+E++       +  +    +     +     + + L F H H    V+  D
Sbjct: 71  HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR---VLHRD 127

Query: 807 VSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS------INSSAYVAPET-KESKDITEKGD 859
           + P  ++++   E  ++L+  GLA             + +  Y APE     K  +   D
Sbjct: 128 LKPQNLLIN--TEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVD 185

Query: 860 IYGFGLILIDLLTGKSP--ADADFGVHESIVE---------WARYCYSDCHLDTWVDPFI 908
           I+  G I  +++T ++    D++      I           W        +  ++     
Sbjct: 186 IWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWAR 245

Query: 909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
           +     +     +  +L       DP  R  A   
Sbjct: 246 QDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAA 280

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.3 bits (218), Expect = 1e-19
 Identities = 41/276 (14%), Positives = 94/276 (34%), Gaps = 36/276 (13%)

Query: 692 GKKGVSSSYKVRSLAND----MQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLH 747
           G     + YK   +       +   +K++ +  +   +    D +     + +P++ RL 
Sbjct: 18  GSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLL 77

Query: 748 GVCRSEKAAYLVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVA 804
           G+C +     +      G  L  V     N+  +      + IAK + +L       +V 
Sbjct: 78  GICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVH 134

Query: 805 GDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS--------AYVAPETKESKDITE 856
            D++   V+V      H++++  GLA    ++              ++A E+   +  T 
Sbjct: 135 RDLAARNVLVKTPQ--HVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 192

Query: 857 KGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ 916
           + D++ +G+ + +L+T  S         E              L+           +   
Sbjct: 193 QSDVWSYGVTVWELMTFGSKPYDGIPASEIS----------SILEKGERLPQPPICTI-- 240

Query: 917 NEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR 952
               ++  + + C   D  +RP   ++        R
Sbjct: 241 ----DVYMIMVKCWMIDADSRPKFRELIIEFSKMAR 272

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.6 bits (216), Expect = 4e-19
 Identities = 46/281 (16%), Positives = 93/281 (33%), Gaps = 34/281 (12%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           G+             N ++  +KKI      T         +      H NI+ ++ + R
Sbjct: 17  GEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIR 76

Query: 752 SEKAAYLVYEYI----EGKELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAG 805
           +     +   Y+     G +L ++L+   LS +        I + L+++H   S +V+  
Sbjct: 77  APTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIH---SANVLHR 133

Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLA---------YCTDSKSINSSAYVAPE-TKESKDIT 855
           D+ P  ++++      L++   GLA             ++ + +  Y APE    SK  T
Sbjct: 134 DLKPSNLLLN--TTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYT 191

Query: 856 EKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS 913
           +  DI+  G IL ++L+ +              I+        +              +S
Sbjct: 192 KSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLS 251

Query: 914 SIQNEIV-----------EIMNLALHCTAGDPTARPCASDV 943
                 V           + ++L       +P  R      
Sbjct: 252 LPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQA 292

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.5 bits (216), Expect = 5e-19
 Identities = 48/281 (17%), Positives = 86/281 (30%), Gaps = 38/281 (13%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCR 751
           G       Y+ +   +     +KK++         F     Q  + + H NIVRL     
Sbjct: 29  GNGSFGVVYQAKLCDSGELVAIKKVLQ-----DKRFKNRELQIMRKLDHCNIVRLRYFFY 83

Query: 752 SEKAA------YLVYEYIEGKELSEVLRN------LSWERRRKVAIGIAKALRFLHFHCS 799
           S           LV +Y+                 L     +     + ++L ++H   S
Sbjct: 84  SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---S 140

Query: 800 PSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS-----AYVAP-ETKESKD 853
             +   D+ P  +++D  D   L+L   G A        N S      Y AP     + D
Sbjct: 141 FGICHRDIKPQNLLLD-PDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATD 199

Query: 854 ITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH 911
            T   D++  G +L +LL G+     D+       I++       +   +   +      
Sbjct: 200 YTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKF 259

Query: 912 VSSIQNEIVEIM---------NLALHCTAGDPTARPCASDV 943
                +   ++           L        PTAR    + 
Sbjct: 260 PQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEA 300

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (210), Expect = 3e-18
 Identities = 48/278 (17%), Positives = 96/278 (34%), Gaps = 32/278 (11%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKII--DVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV 749
           G     +           +  +KK+     + +     + ++     +  H N++ L  V
Sbjct: 27  GSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM-RHENVIGLLDV 85

Query: 750 CRSEKAA------YLVYEYIEGKELSEVLRN-LSWERRRKVAIGIAKALRFLHFHCSPSV 802
              ++        YLV  ++       +    L  +R + +   + K LR++H       
Sbjct: 86  FTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIH- 144

Query: 803 VAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPET-KESKDITEKG 858
              D+ PG + V+  ++  L++   GLA   DS+    + +  Y APE        T+  
Sbjct: 145 --RDLKPGNLAVN--EDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTV 200

Query: 859 DIYGFGLILIDLLTGKSP--ADADFGVHESIVE---------WARYCYSDCHLDTWVDPF 907
           DI+  G I+ +++TGK+           + I++           R    +        P 
Sbjct: 201 DIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPE 260

Query: 908 IRGH--VSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
           +      S + N     +NL       D   R  A + 
Sbjct: 261 LEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEA 298

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 82.2 bits (202), Expect = 1e-17
 Identities = 47/275 (17%), Positives = 94/275 (34%), Gaps = 30/275 (10%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKI--IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV 749
           G+      YK +       F +KKI     +    S+   ++    K + H NIV+L+ V
Sbjct: 11  GEGTYGVVYKAQ-NNYGETFALKKIRLEKEDEGIPSTTIREI-SILKELKHSNIVKLYDV 68

Query: 750 CRSEKAAYLVYEYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGD 806
             ++K   LV+E+++      +      L     +   + +   + + H      V+  D
Sbjct: 69  IHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRD 125

Query: 807 VSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS------INSSAYVAPET-KESKDITEKGD 859
           + P  ++++ +    L+++  GLA             I +  Y AP+    SK  +   D
Sbjct: 126 LKPQNLLINREG--ELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTID 183

Query: 860 IYGFGLILIDLLTGKSP--ADADFGVHESIVE---------WARYCYSDCHLDTWVDPFI 908
           I+  G I  +++ G       ++      I           W        +   +     
Sbjct: 184 IWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEP 243

Query: 909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
               S ++      ++L       DP  R  A   
Sbjct: 244 LPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQA 278

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (194), Expect = 1e-16
 Identities = 50/273 (18%), Positives = 94/273 (34%), Gaps = 24/273 (8%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKI--IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV 749
           G+    + +K ++        +K++   D +    SS   ++    K + H NIVRLH V
Sbjct: 11  GEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREI-CLLKELKHKNIVRLHDV 69

Query: 750 CRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSP 809
             S+K   LV+E+ +                  V   + + L+ L F  S +V+  D+ P
Sbjct: 70  LHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKP 129

Query: 810 GKVIVDGKDEPHLRLSVPGLAYCTDSKSINSSAYV-------APETKESKDITEKGDIYG 862
             ++++      L+L+  GLA          SA V             +K  +   D++ 
Sbjct: 130 QNLLINRNG--ELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWS 187

Query: 863 FGLILIDLLTGKSPADADFGVHE------------SIVEWARYCYSDCHLDTWVDPFIRG 910
            G I  +L     P      V +            +  +W        +    + P    
Sbjct: 188 AGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTS 247

Query: 911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDV 943
            V+ +        +L  +    +P  R  A + 
Sbjct: 248 LVNVVPKLNATGRDLLQNLLKCNPVQRISAEEA 280

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.4 bits (195), Expect = 2e-16
 Identities = 41/194 (21%), Positives = 72/194 (37%), Gaps = 12/194 (6%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDV---SQFGKLIMHPNIVRLHG 748
           GK        VR  A    + +K I+    I            S+  +   HP +  L  
Sbjct: 14  GKGTFGKVILVREKATGRYYAMK-ILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKY 72

Query: 749 VCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVS 808
             ++      V EY  G EL   L         +     A+ +  L +  S  VV  D+ 
Sbjct: 73  AFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIK 132

Query: 809 PGKVIVDGKDEPHLRLSVPGLAYCTDSKS------INSSAYVAPETKESKDITEKGDIYG 862
              +++D   + H++++  GL     S          +  Y+APE  E  D     D +G
Sbjct: 133 LENLMLD--KDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWG 190

Query: 863 FGLILIDLLTGKSP 876
            G+++ +++ G+ P
Sbjct: 191 LGVVMYEMMCGRLP 204

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (188), Expect = 1e-15
 Identities = 49/269 (18%), Positives = 94/269 (34%), Gaps = 32/269 (11%)

Query: 692 GKKGVSSSYKVRSLAN--DMQFVVKKIIDVNTITTSSFWPDVSQFGKLIM-----HPNIV 744
           G       + VR ++     +    K++   TI   +   + ++  + ++      P +V
Sbjct: 33  GTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLV 92

Query: 745 RLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVA 804
            LH   ++E   +L+ +YI G EL   L         +V I + + +  L       ++ 
Sbjct: 93  TLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIY 152

Query: 805 GDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS-------AYVAPETKESKD--IT 855
            D+    +++D      L     GL+    +     +        Y+AP+     D    
Sbjct: 153 RDIKLENILLDSNGHVVLTDF--GLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHD 210

Query: 856 EKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI 915
           +  D +  G+++ +LLTG SP   D G   S  E +R            +P     +S+ 
Sbjct: 211 KAVDWWSLGVLMYELLTGASPFTVD-GEKNSQAEISRRILKS-------EPPYPQEMSA- 261

Query: 916 QNEIVEIMNLALHCTAGDPTARPCASDVT 944
                   +L       DP  R       
Sbjct: 262 -----LAKDLIQRLLMKDPKKRLGCGPRD 285

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 1e-15
 Identities = 41/287 (14%), Positives = 80/287 (27%), Gaps = 39/287 (13%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKI--IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV 749
           G               D    +KK+     N       + ++    K + H NI+ L  V
Sbjct: 26  GSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYREL-VLMKCVNHKNIISLLNV 84

Query: 750 CRSEKAA------YLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVV 803
              +K        YLV E ++      +   L  ER   +   +   ++ LH      ++
Sbjct: 85  FTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAG---II 141

Query: 804 AGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKS---INSSAYVAPETKESKDITEKGDI 860
             D+ P  ++V       +          T       + +  Y APE        E  DI
Sbjct: 142 HRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDI 201

Query: 861 YGFGLILIDLLTGKSP--ADADFGVHESIVE---------WARYCYSDCHLDTWVDPFIR 909
           +  G I+ +++  K              ++E           +   +  +       +  
Sbjct: 202 WSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAG 261

Query: 910 GHVSSIQNEIV-------------EIMNLALHCTAGDPTARPCASDV 943
                +  + +             +  +L       DP  R    D 
Sbjct: 262 LTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDA 308

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.1 bits (186), Expect = 2e-15
 Identities = 44/287 (15%), Positives = 97/287 (33%), Gaps = 38/287 (13%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKII--DVNTITTSSFWPDVSQFGKLIMHPNIVRLHGV 749
           G+      +K R      +  +KK++  +       +   ++ +  +L+ H N+V L  +
Sbjct: 19  GQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREI-KILQLLKHENVVNLIEI 77

Query: 750 CRSEKAA--------YLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPS 801
           CR++ +         YLV+++ E      +   L      ++   +   L  L++     
Sbjct: 78  CRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNK 137

Query: 802 VVAGDVSPGKVIVDGKDEPHLRLSVPGLA----------YCTDSKSINSSAYVAPET-KE 850
           ++  D+    V++       L+L+  GLA              +  + +  Y  PE    
Sbjct: 138 ILHRDMKAANVLITRDG--VLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLG 195

Query: 851 SKDITEKGDIYGFGLILIDLLTGKSP--ADADFGVHESIVE---------WARYCYSDCH 899
            +D     D++G G I+ ++ T       + +      I +         W      + +
Sbjct: 196 ERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELY 255

Query: 900 LDTWVDPFIRGHVSSIQNEIV---EIMNLALHCTAGDPTARPCASDV 943
               +    +  V       V     ++L       DP  R  + D 
Sbjct: 256 EKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDA 302

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.5 bits (177), Expect = 4e-14
 Identities = 45/256 (17%), Positives = 88/256 (34%), Gaps = 33/256 (12%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDV---SQFGKLIMHPNIVRLHG 748
           G         V+   +   + +K I+D   +             +  + +  P +V+L  
Sbjct: 50  GTGSFGRVMLVKHKESGNHYAMK-ILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEF 108

Query: 749 VCRSEKAAYLVYEYIEGKELSEVL---RNLSWERRRKVAIGIAKALRFLHFHCSPSVVAG 805
             +     Y+V EY+ G E+   L      S    R  A  I     +LH      ++  
Sbjct: 109 SFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD---LIYR 165

Query: 806 DVSPGKVIVDGKDEPHLRLSVPGLA---YCTDSKSINSSAYVAPETKESKDITEKGDIYG 862
           D+ P  +++D +   +++++  G A            +   +APE   SK   +  D + 
Sbjct: 166 DLKPENLLIDQQG--YIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWA 223

Query: 863 FGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEI 922
            G+++ ++  G  P  AD       ++      S              H SS      ++
Sbjct: 224 LGVLIYEMAAGYPPFFAD-----QPIQIYEKIVSG-------KVRFPSHFSS------DL 265

Query: 923 MNLALHCTAGDPTARP 938
            +L  +    D T R 
Sbjct: 266 KDLLRNLLQVDLTKRF 281

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (169), Expect = 2e-13
 Identities = 48/207 (23%), Positives = 69/207 (33%), Gaps = 5/207 (2%)

Query: 106 FSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGG 165
            S   S   +N    N T  +P        IL LS N+L       +  ++ L  L+L  
Sbjct: 6   VSKVASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 166 NVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIG 225
             L          +  L    L+ NQL             L  + + +N L+      + 
Sbjct: 65  AELTKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRLTSLPLGALR 121

Query: 226 DLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSD 285
            L  L  L L  N L    P        L  L L  N LT      + GL++L +  L +
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 286 NYLSGEIPEEVIQLQNLEILHLFSNNF 312
           N L   IP+       L    L  N +
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (161), Expect = 2e-12
 Identities = 48/209 (22%), Positives = 74/209 (35%), Gaps = 6/209 (2%)

Query: 56  SCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFL 115
                     +    +N++  +   +        ++LS N L              L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQL 60

Query: 116 NLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLS 175
           NL     T     G+L  L  LDLS+N L           +   VLD+  N L      +
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL-TVLDVSFNRLTSLPLGA 119

Query: 176 ISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDL 235
           +  +  LQ   L  N+L    P  +     L+ + L  NNL+      +  L +L+ L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 236 VYNNLTGQIPPSFGNLSNLRYLFLYQNKL 264
             N+L   IP  F     L + FL+ N  
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (157), Expect = 5e-12
 Identities = 49/210 (23%), Positives = 73/210 (34%), Gaps = 7/210 (3%)

Query: 199 EIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLF 258
           E+ ++ +   +     NL+  +P ++        L L  N L      +    + L  L 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 259 LYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPS 318
           L + +LT         L  L + DLS N L             L +L +  N  T     
Sbjct: 62  LDRAELTKLQVDGT--LPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRLTSLPLG 118

Query: 319 SLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLI 378
           +L  + +LQ L L  N+     P  L     L  + L+ N LT      L    +L  L+
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 379 LFSNSLEGKIPNSLSTCKSLRRVRLQNNRL 408
           L  NSL   IP        L    L  N  
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 2e-10
 Identities = 37/205 (18%), Positives = 69/205 (33%), Gaps = 6/205 (2%)

Query: 275 LKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSN 334
           + S +  +     L+  +P ++   ++  ILHL  N       ++L    +L  L L   
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 335 QFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLST 394
           + +               +  +       +P       +L  L +  N L      +L  
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 395 CKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGN 454
              L+ + L+ N L        T  P +  L ++ N+L+         + +L  L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 455 NFSGKLPDSFGSDQLENLDLSENRF 479
           +        FGS  L    L  N +
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 1e-09
 Identities = 45/210 (21%), Positives = 73/210 (34%), Gaps = 6/210 (2%)

Query: 367 TLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLD 426
            +    S  ++     +L   +P  L   K    + L  N L     +       +  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 427 ISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRS 486
           +          +    +  L  L+L+ N              L  LD+S NR +     +
Sbjct: 62  LDRA--ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 487 FGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDL 546
              L EL +L +  N+L    P  L+   KL  L L+NN L+      L+ +  L  L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 547 SENQLSGKIPQTLGRVASLVQVNISHNHFH 576
            EN L   IP+       L    +  N + 
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 9e-09
 Identities = 43/207 (20%), Positives = 66/207 (31%), Gaps = 6/207 (2%)

Query: 345 GKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQ 404
            K  +   ++     LT  +P  L        L L  N L      +L     L ++ L 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 405 NNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSF 464
              L+         LP++  LD+S N L       +       +        S  L    
Sbjct: 64  RAELTKL--QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 465 GSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSN 524
           G  +L+ L L  N      P       +L +L ++ N L       L+  + L +L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 525 NQLSGHIPASLSEMPVLGQLDLSENQL 551
           N L   IP       +L    L  N  
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 42  NWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEI 101
            +                +  +  + L+  N++   +  +  L +++++ L  N L   I
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187

Query: 102 PSDIFSSSNSLRFLNLSNNNF 122
           P   F S   L F  L  N +
Sbjct: 188 PKGFFGSH-LLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 41/208 (19%), Positives = 66/208 (31%), Gaps = 5/208 (2%)

Query: 391 SLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLN 450
            +S   S   V      L+  L  +         L +S N L           T L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 451 LAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEE 510
           L  +          G+  +       +    ++P     L  L  L +S N+L       
Sbjct: 62  L--DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 511 LSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNI 570
           L    +L  L L  N+L    P  L+  P L +L L+ N L+      L  + +L  + +
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 571 SHNHFHGSLPSTGAFLAINATAVAGNDL 598
             N  +           +    + GN  
Sbjct: 180 QENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (171), Expect = 2e-13
 Identities = 51/317 (16%), Positives = 106/317 (33%), Gaps = 50/317 (15%)

Query: 653 RVENEDGIWEVQFFNSKVGKSLTIDEIISSTTEENLTSRGKKGVSSSYKVRSLANDMQFV 712
           R E    IWEV        +       +           G     S          ++  
Sbjct: 6   RQELNKTIWEVP-------ERYQNLSPV-----------GSGAYGSVCAAFDTKTGLRVA 47

Query: 713 VKKI--IDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS-----EKAAYLVYEYIEG 765
           VKK+     + I     + ++ +  K + H N++ L  V        E     +  ++ G
Sbjct: 48  VKKLSRPFQSIIHAKRTYREL-RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMG 106

Query: 766 KELSEVLRN--LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLR 823
            +L+ +++   L+ +  + +   I + L+++H          D+ P  + V+  ++  L+
Sbjct: 107 ADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIH---RDLKPSNLAVN--EDCELK 161

Query: 824 LSVPGLAYCTDSKS---INSSAYVAPE-TKESKDITEKGDIYGFGLILIDLLTGKSPADA 879
           +   GLA  TD +    + +  Y APE         +  DI+  G I+ +LLTG++    
Sbjct: 162 ILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPG 221

Query: 880 D---------FGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEI----MNLA 926
                       +  +         S      ++    +    +  N  +      ++L 
Sbjct: 222 TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL 281

Query: 927 LHCTAGDPTARPCASDV 943
                 D   R  A+  
Sbjct: 282 EKMLVLDSDKRITAAQA 298

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 3e-11
 Identities = 41/270 (15%), Positives = 88/270 (32%), Gaps = 19/270 (7%)

Query: 66  IELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTG- 124
           ++L+ KN+   ++  +     V +     + +    P     S   ++ ++LSN+     
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQ--PLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 125 --PVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSL 182
                +   S+L+ L L    LS  I   +   S L  L+L G     E  L     +  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 183 QIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSG---------EIPKEIGDLTSLNHL 233
           ++  L  +       + +          +   NLSG                    ++  
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 234 DLVYNNLTGQIPPSFGNLSNLRYLFLYQ-NKLTGSIPKSILGLKSLVSFDLSDNYLSGEI 292
                 L       F  L+ L++L L +   +       +  + +L +  +      G +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 293 PEEVIQLQNLEILHLFSNNFTGKIPSSLAS 322
                 L +L+I     ++FT     ++ +
Sbjct: 242 QLLKEALPHLQIN---CSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 2e-10
 Identities = 40/268 (14%), Positives = 89/268 (33%), Gaps = 15/268 (5%)

Query: 232 HLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGE 291
            LDL   NL   +     +   +      ++ +   + +       +   DLS++ +   
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVS 61

Query: 292 IPEEVIQ-LQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNL 350
               ++     L+ L L     +  I ++LA    L  L L       E        +  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 351 TVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRV--------- 401
            + +L+ ++      + +  + +     +   +L G   N   +  S             
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 402 RLQNNRLSGELSSEFTRLPLVYFLDISG-NDLSGRIGEQKWEMTSLQMLNLAGNNFSGKL 460
              +  L  +   EF +L  +  L +S   D+      +  E+ +L+ L + G    G L
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 461 PDSFGSDQLENLDLSENRFSGTIPRSFG 488
                 + L +L ++ + F+     + G
Sbjct: 242 QLL--KEALPHLQINCSHFTTIARPTIG 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 2e-10
 Identities = 41/296 (13%), Positives = 83/296 (28%), Gaps = 26/296 (8%)

Query: 115 LNLSNNNFTGPVPIGSLSR-LEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGE-I 172
           L+L+  N    V    LS+ +       + +   + E    F  ++ +DL  +V+    +
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTL 63

Query: 173 PLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNH 232
              +S  + LQ  +L   +L   I   + +  NL  + L   +   E   +    +    
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 233 LDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEI 292
            +L  +                    + Q  L+G                  +   S   
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK---------------NLQKSDLS 168

Query: 293 PEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWS-NQFSGEIPSNLGKQNNLT 351
                    + +    S             +  LQ L L        E    LG+   L 
Sbjct: 169 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 228

Query: 352 VIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLR----RVRL 403
            + +      G +        +L  L +  +        ++   K+      + RL
Sbjct: 229 TLQVFGIVPDGTLQLLK---EALPHLQINCSHFTTIARPTIGNKKNQEIWGIKCRL 281

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 447 QMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGD 506
           Q L+L G N    +     S  +       +     +   F     +  + +S + +   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 507 -IPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLD 545
            +   LS C KL +L L   +LS  I  +L++   L +L+
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.6 bits (141), Expect = 6e-11
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 113 RFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEI 172
           R L+L++ + T    +  L  +  LDLS+N L    P    + + L+ L++         
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALE 56

Query: 173 PL-SISNITSLQIFTLASNQLIG-SIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSL 230
            +  ++N+  LQ   L +N+L   +  + +     L  + L  N+L  +       L  +
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.5 bits (133), Expect = 8e-10
 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 233 LDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEI 292
           L L + +LT  +      L  + +L L  N+L    P ++  L+ L     SDN    E 
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA--LEN 57

Query: 293 PEEVIQLQNLEILHLFSNNFTG-KIPSSLASMPKLQVLQLWSNQFSGE 339
            + V  L  L+ L L +N          L S P+L +L L  N    E
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.3 bits (122), Expect = 2e-08
 Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 447 QMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGD 506
           ++L+LA  + +  L        + +LDLS NR     P +   L  L  L+ S N    +
Sbjct: 1   RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDN--ALE 56

Query: 507 IPEELSSCKKLVSLDLSNNQL-SGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASL 565
             + +++  +L  L L NN+L        L   P L  L+L  N L         R+A +
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

Query: 566 V 566
           +
Sbjct: 116 L 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 8e-07
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 304 ILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGK 363
           +LHL   + T  +   L  +  +  L L  N+     P+ L     L V+    +    +
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQ--ASDNALE 56

Query: 364 IPETLCDSGSLFKLILFSNSLEG-KIPNSLSTCKSLRRVRLQNNRLSGE 411
             + + +   L +L+L +N L+       L +C  L  + LQ N L  E
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 9e-07
 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 425 LDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIP 484
           L ++  DL+  +     ++  +  L+L+ N      P       LE L  S+N       
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL--ENV 58

Query: 485 RSFGRLSELMQLKISRNKLFG-DIPEELSSCKKLVSLDLSNNQLS---GHIPASLSEMPV 540
                L  L +L +  N+L      + L SC +LV L+L  N L    G        +P 
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 541 LGQL 544
           +  +
Sbjct: 119 VSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 8/126 (6%)

Query: 327 QVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEG 386
           +VL L     +  +  +L +   +T +DLS N L    P       +L  L +   S   
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPAL----AALRCLEVLQASDNA 54

Query: 387 KI-PNSLSTCKSLRRVRLQNNRL-SGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMT 444
               + ++    L+ + L NNRL            P +  L++ GN L    G Q+    
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 445 SLQMLN 450
            L  ++
Sbjct: 115 MLPSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 25/105 (23%)

Query: 66  IELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPS--------------------DI 105
           + L+ K+++  +   +  L  V  ++LS N+L    P+                    D 
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 106 FSSSNSLRFLNLSNNNFTG---PVPIGSLSRLEILDLSNNMLSGK 147
            ++   L+ L L NN         P+ S  RL +L+L  N L  +
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.4 bits (150), Expect = 8e-11
 Identities = 29/217 (13%), Positives = 78/217 (35%), Gaps = 30/217 (13%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL----------IMHP 741
           G    S+ +  + + N+    +K I+  + + T +   ++    ++          +   
Sbjct: 22  GWGHFSTVWLAKDMVNNTHVAMK-IVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGAN 80

Query: 742 NIVRLHGVCRSEKAAYLVYEYIEGKELSEVL--------RNLSWERRRKVAIGIAKALRF 793
           +I++L      +    +    +       +L        R +     ++++  +   L +
Sbjct: 81  HILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDY 140

Query: 794 LHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDSKSINSS--------AYVA 845
           +H  C   ++  D+ P  V+++  D P   + +  +A   ++   +           Y +
Sbjct: 141 MHRRCG--IIHTDIKPENVLMEIVDSPENLIQI-KIADLGNACWYDEHYTNSIQTREYRS 197

Query: 846 PETKESKDITEKGDIYGFGLILIDLLTGKSPADADFG 882
           PE           DI+    ++ +L+TG    + D G
Sbjct: 198 PEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEG 234

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.5 bits (140), Expect = 5e-10
 Identities = 31/216 (14%), Positives = 67/216 (31%), Gaps = 21/216 (9%)

Query: 84  LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNM 143
           L +   I    + ++  +     +  + +  L+      T    +  L+ L  L+L +N 
Sbjct: 18  LANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ 74

Query: 144 LSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQL 203
           ++   P +  +      L       V  I    S  T     T  ++    +    +  L
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 204 RNLKWIYLGYNNL--------------SGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFG 249
                     + L                     + +L+ L  L    N ++   P    
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LA 192

Query: 250 NLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSD 285
           +L NL  + L  N+++   P  +    +L    L++
Sbjct: 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.7 bits (138), Expect = 9e-10
 Identities = 38/235 (16%), Positives = 73/235 (31%), Gaps = 19/235 (8%)

Query: 103 SDIFSSSN--SLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKV 160
           + IF      +   +    +N T  V    L  +  L      ++    E +   + L  
Sbjct: 10  NVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIG 67

Query: 161 LDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEI 220
           L+L  N +    PL      +    +    + + +I                 +      
Sbjct: 68  LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 221 PKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVS 280
              +  L    +     + L G     + ++ N +                +  L  L +
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD----------LTPLANLSKLTT 177

Query: 281 FDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQ 335
               DN +S   P  +  L NL  +HL +N  +   P  LA+   L ++ L +NQ
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL-TNQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 36/218 (16%), Positives = 65/218 (29%), Gaps = 22/218 (10%)

Query: 202 QLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQ 261
            L N   I  G +N++  + +   DL  +  L      +T         L+NL  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 262 NKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFS------------ 309
           N++T   P   L   + +    +       I                +            
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 310 --NNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPET 367
                  +I +         +  L          + L   + LT +    N ++   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 368 LCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQN 405
           L    +L ++ L +N +    P  L+   +L  V L N
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 49  FCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSS 108
                      +   N   LS  N      + + +L  + ++    N++S   P    +S
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP---LAS 193

Query: 109 SNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSN 141
             +L  ++L NN  +   P+ + S L I+ L+N
Sbjct: 194 LPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 4e-07
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 82  FHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSN 141
             L  + ++   S   +        ++ + L  L   +N  +   P+ SL  L  + L N
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKN 204

Query: 142 NMLSGKIPEEIGSFSGLKVLDL 163
           N +S   P  + + S L ++ L
Sbjct: 205 NQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 31/217 (14%), Positives = 68/217 (31%), Gaps = 22/217 (10%)

Query: 154 SFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGY 213
           + +    +  G + +   +  +  ++  +   +      + +I   +  L NL  + L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKD 72

Query: 214 NNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSIL 273
           N ++   P +     +   L          I       +         +    +   ++ 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 274 GLKSLVSFDLSDNYL--------------SGEIPEEVIQLQNLEILHLFSNNFTGKIPSS 319
            L   ++   + + L                     +  L  L  L    N  +   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 320 LASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLS 356
           LAS+P L  + L +NQ S   P  L   +NL ++ L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 37/251 (14%), Positives = 72/251 (28%), Gaps = 41/251 (16%)

Query: 274 GLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWS 333
            L + +      + ++  + +    L  +  L  F    T     ++             
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-----TI------------- 56

Query: 334 NQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLS 393
                     +   NNL  ++L  N +T   P       +  +L          I    S
Sbjct: 57  --------EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQS 108

Query: 394 TCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAG 453
                       +       S    L L      + + L+G    Q   + + Q+ +L  
Sbjct: 109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP 168

Query: 454 NNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSS 513
                KL      D         N+ S   P     L  L+++ +  N++    P  L++
Sbjct: 169 LANLSKLTTLKADD---------NKISDISP--LASLPNLIEVHLKNNQISDVSP--LAN 215

Query: 514 CKKLVSLDLSN 524
              L  + L+N
Sbjct: 216 TSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 37/217 (17%), Positives = 68/217 (31%), Gaps = 24/217 (11%)

Query: 349 NLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRL 408
           N   I    + +T  + +   D   +  L  F   +   I   +    +L  + L++N++
Sbjct: 20  NAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQI 75

Query: 409 SGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQ 468
           +     +         L  +       I   +   T         +        +     
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 469 LENLDL---------------SENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSS 513
           L+   +               S      +       LS+L  LK   NK+    P  L+S
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LAS 193

Query: 514 CKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQ 550
              L+ + L NNQ+S   P  L+    L  + L+ NQ
Sbjct: 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 32/216 (14%), Positives = 64/216 (29%), Gaps = 22/216 (10%)

Query: 250 NLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFS 309
            L+N   +   ++ +T ++ ++   L  + +       ++    E V  L NL  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 310 NNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLC 369
           N  T   P    +      L     +    I      +         T+         L 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 370 DSGSLFKLILFSNSLEGKI--------------PNSLSTCKSLRRVRLQNNRLSGELSSE 415
                   I   + L G                   L+    L  ++  +N++S    S 
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISP 190

Query: 416 FTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNL 451
              LP +  + +  N +S          ++L ++ L
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPLAN--TSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 5/165 (3%)

Query: 27  LSFKSTVNDPYNFLSNWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPH 86
           L  K         L N                 S       +   +++    + +  L  
Sbjct: 68  LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 87  VESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSG 146
           + ++ +    L+        +   +L++L++ N   +   P+ +LS+L  L   +N +S 
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 147 KIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQ 191
             P  + S   L  + L  N +    PL  +N ++L I TL +NQ
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTL-TNQ 227

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 59.8 bits (143), Expect = 6e-10
 Identities = 33/143 (23%), Positives = 53/143 (37%), Gaps = 7/143 (4%)

Query: 42  NWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEI 101
                        ++ +++   +  EL        +S +IF        NL     S   
Sbjct: 216 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 275

Query: 102 PSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVL 161
              +     SL  LN+SNN     +P     RLE L  S N L+ ++PE   +   LK L
Sbjct: 276 IRSLCDLPPSLEELNVSNNKLIE-LP-ALPPRLERLIASFNHLA-EVPELPQN---LKQL 329

Query: 162 DLGGNVLVGEIPLSISNITSLQI 184
            +  N L  E P    ++  L++
Sbjct: 330 HVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 58.7 bits (140), Expect = 1e-09
 Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 208 WIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGS 267
                 N  S EI        SL  L++  N L  ++P        L  L    N L   
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-E 318

Query: 268 IPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEI 304
           +P+    LK L    +  N L  E P+    +++L +
Sbjct: 319 VPELPQNLKQL---HVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 58.3 bits (139), Expect = 2e-09
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 232 HLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGE 291
                 N  + +I        +L  L +  NKL   +P     L+ L     S N+L+ E
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-E 318

Query: 292 IPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQV 328
           +PE     QNL+ LH+  N    + P    S+  L++
Sbjct: 319 VPEL---PQNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 55.6 bits (132), Expect = 1e-08
 Identities = 55/338 (16%), Positives = 96/338 (28%), Gaps = 26/338 (7%)

Query: 228 TSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNY 287
              + L+L    L+  +P       +L  L    N LT  +P+     +SL S  + +N 
Sbjct: 38  RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNN 89

Query: 288 LSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQ 347
           L       +  L  L      SNN   K+P     +     L++     +          
Sbjct: 90  LKA-----LSDLPPLLEYLGVSNNQLEKLP----ELQNSSFLKIIDVDNNSLKKLPDLPP 140

Query: 348 NNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNR 407
           +   +   +         + L    +++        L     +  S       +      
Sbjct: 141 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPEL 200

Query: 408 LSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSD 467
            +    +       +             +  +   +T L  L  +            G  
Sbjct: 201 QNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS 260

Query: 468 QLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQL 527
           +L       N  S  I         L +L +S NKL  ++P        L  L  S N L
Sbjct: 261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPPR---LERLIASFNHL 316

Query: 528 SGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASL 565
           +  +P        L QL +  N L  + P     V  L
Sbjct: 317 A-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.4 bits (129), Expect = 3e-08
 Identities = 60/341 (17%), Positives = 109/341 (31%), Gaps = 27/341 (7%)

Query: 252 SNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNN 311
                L L    L+ S+P+    L+SL     S N L+ E+PE     Q+L+ L + +NN
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPEL---PQSLKSLLVDNNN 89

Query: 312 FTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDS 371
                  +L+ +P L      SN    ++P          +   + +           + 
Sbjct: 90  LK-----ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 372 GSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGND 431
            +     L           +L    ++        +L     S  + +     L+     
Sbjct: 145 IAAGNNQLEEL----PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPEL 200

Query: 432 LSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLS 491
            +       +   +L             L                  F       F  LS
Sbjct: 201 QNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS 260

Query: 492 ELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQL 551
           EL       N    +I         L  L++SNN+L   +PA       L +L  S N L
Sbjct: 261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL 316

Query: 552 SGKIPQTLGRVASLVQVNISHNHFHG--SLPSTGAFLAINA 590
           + ++P+      +L Q+++ +N       +P +   L +N+
Sbjct: 317 A-EVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 4e-07
 Identities = 49/328 (14%), Positives = 95/328 (28%), Gaps = 27/328 (8%)

Query: 177 SNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLV 236
                L++    +N  + S+P     L +L       N+L+ E+P+    L SL   +  
Sbjct: 38  RQAHELEL----NNLGLSSLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNN 89

Query: 237 YNNLTGQIP---------PSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNY 287
              L+   P              L  L+     +     +     L         ++   
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 288 LSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQ 347
              E   E+  L  L  ++  +N+        L+    +    +       +    L   
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 348 NNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLR--RVRLQN 405
                +  +   L   +         L  L     SL     +                 
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 406 NRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFG 465
           N  S E+ S     P +  L++S N L     E       L+ L  + N+ + ++P+   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHLA-EVPELPQ 324

Query: 466 SDQLENLDLSENRFSGTIPRSFGRLSEL 493
           +  L+ L +  N      P     + +L
Sbjct: 325 N--LKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 53/344 (15%), Positives = 109/344 (31%), Gaps = 29/344 (8%)

Query: 132 SRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQ 191
            +   L+L+N  LS  +PE       L+ L    N        S++ +  L   +L S  
Sbjct: 38  RQAHELELNNLGLS-SLPELPPH---LESLVASCN--------SLTELPEL-PQSLKSLL 84

Query: 192 LIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNL 251
           +  +  + +  L  L       NN   ++P+        +    + +     +       
Sbjct: 85  VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQN-----SSFLKIIDVDNNSLKKLPDLP 139

Query: 252 SNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNN 311
            +L ++    N+L        L   + +  D +      ++P  +  +     +      
Sbjct: 140 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE 199

Query: 312 FTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDS 371
                  +        +  L     S E  +              +              
Sbjct: 200 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 259

Query: 372 GSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGND 431
             L   + + N+   +I +      SL  + + NN+L  EL +   RL     L  S N 
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNH 315

Query: 432 LSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLS 475
           L+  + E      +L+ L++  N    + PD   S  +E+L ++
Sbjct: 316 LA-EVPE---LPQNLKQLHVEYNPLR-EFPDIPES--VEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.002
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 10/71 (14%)

Query: 509 EELSSC--KKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLV 566
             L  C  ++   L+L+N  LS  +P      P L  L  S N L+ ++P+      SL 
Sbjct: 30  SRLRDCLDRQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQ---SLK 81

Query: 567 QVNISHNHFHG 577
            + + +N+   
Sbjct: 82  SLLVDNNNLKA 92

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.002
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 110 NSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLV 169
                L L+N   +  +P      LE L  S N L+ ++PE   S   LK L +  N L 
Sbjct: 38  RQAHELELNNLGLSS-LP-ELPPHLESLVASCNSLT-ELPELPQS---LKSLLVDNNNLK 91

Query: 170 GEIPL 174
               L
Sbjct: 92  ALSDL 96

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 57.5 bits (137), Expect = 7e-10
 Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 8/184 (4%)

Query: 137 LDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSI-SNITSLQIFTLASNQLIGS 195
           +D +   L  +IP +I        L L  N L       +   +  L    L  NQL G 
Sbjct: 13  VDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 196 IPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLR 255
            P       +++ + LG N +     K    L  L  L+L  N ++  +P SF +L++L 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 256 YLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGK 315
            L L  N    +   +    + L    L+        P +   +++++I  L  + F   
Sbjct: 130 SLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCS 185

Query: 316 IPSS 319
             +S
Sbjct: 186 SENS 189

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.8 bits (133), Expect = 3e-09
 Identities = 32/201 (15%), Positives = 66/201 (32%), Gaps = 15/201 (7%)

Query: 84  LPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNM 143
                  NL    ++  +     +  NS+  +  +N++      I  L  +  L L+ N 
Sbjct: 23  FAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK 79

Query: 144 LSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQL 203
           L+   P      + LK L            LS              +  I  I   +   
Sbjct: 80  LTDIKP-----LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 204 RNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNK 263
           +               +   +  L +L+  D   +++          L+ L+ L+L +N 
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-----VPLAGLTKLQNLYLSKNH 189

Query: 264 LTGSIPKSILGLKSLVSFDLS 284
           ++    +++ GLK+L   +L 
Sbjct: 190 ISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 33/196 (16%), Positives = 69/196 (35%), Gaps = 15/196 (7%)

Query: 65  AIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTG 124
              L  K+++  ++ +   L  ++ I  +++ +             ++  L L+ N  T 
Sbjct: 28  KDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTD 82

Query: 125 PVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQI 184
             P+ +L  L  L L  N +      +         L+  G   +  +       +    
Sbjct: 83  IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG 142

Query: 185 FTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQI 244
                     +    + +L  L  + L  N +S  +P  +  LT L +L L  N+++   
Sbjct: 143 NN------KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-- 192

Query: 245 PPSFGNLSNLRYLFLY 260
             +   L NL  L L+
Sbjct: 193 LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 4e-07
 Identities = 39/215 (18%), Positives = 67/215 (31%), Gaps = 55/215 (25%)

Query: 188 ASNQLIGSIPREIGQ------LRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLT 241
             ++ I ++P  I Q              L   +++  + +   +L S++ +    +++ 
Sbjct: 3   LGSETI-TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 59

Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYL------------- 288
                    L N+  LFL  NKLT   P + L     +  D +                 
Sbjct: 60  SVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117

Query: 289 ---------------------------SGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLA 321
                                             + +L  L+ L L  N  +  +P  LA
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LA 175

Query: 322 SMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLS 356
            + KLQ L L  N  S      L    NL V++L 
Sbjct: 176 GLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 5e-07
 Identities = 42/226 (18%), Positives = 81/226 (35%), Gaps = 23/226 (10%)

Query: 116 NLSNNNFTGPVPIG------SLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLV 169
            L +   T P PI       + +     +L    ++  + +     + +  +    + + 
Sbjct: 2   PLGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 59

Query: 170 GEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTS 229
                 I  + ++    L  N+L          L NLK +   + + +            
Sbjct: 60  SVQG--IQYLPNVTKLFLNGNKLTDIK-----PLANLKNLGWLFLDENKVKDLSSLKDLK 112

Query: 230 LNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLS 289
                 + +N    I     +L  L  L+L  NK+T     S L     +S +  DN +S
Sbjct: 113 KLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE--DNQIS 169

Query: 290 GEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQ 335
             +P  +  L  L+ L+L  N+ +     +LA +  L VL+L  +Q
Sbjct: 170 DIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL-FSQ 210

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 32/215 (14%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 267 SIPKSI------LGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSL 320
           ++P  I            +  +L    ++  + +   +L +++ +   +++        +
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--I 64

Query: 321 ASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILF 380
             +P +  L L  N+ +   P       NL  +             +        K +  
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKPL-----ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119

Query: 381 SNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQK 440
            ++    I   +   +        N      + S  T+L  +   D   +D+    G   
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG--- 176

Query: 441 WEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLS 475
             +T LQ L L+ N+ S  L    G   L+ L+L 
Sbjct: 177 --LTKLQNLYLSKNHISD-LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 82  FHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSN 141
             L  +++++L  NQ+S  +P    +    L+ L LS N+ +    +  L  L++L+L +
Sbjct: 153 SRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 8e-04
 Identities = 33/202 (16%), Positives = 72/202 (35%), Gaps = 16/202 (7%)

Query: 349 NLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRL 408
                +L    +T  + +   +S  + ++I  ++ ++      +    ++ ++ L  N+L
Sbjct: 25  ETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKL 80

Query: 409 SGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQ 468
           +         L  + +L +  N           +           +N    +       Q
Sbjct: 81  TDI--KPLANLKNLGWLFLDENK---VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135

Query: 469 LENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLS 528
           LE+L L  N+ +     S       +      +    DI   L+   KL +L LS N +S
Sbjct: 136 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 191

Query: 529 GHIPASLSEMPVLGQLDLSENQ 550
             +  +L+ +  L  L+L  +Q
Sbjct: 192 -DLR-ALAGLKNLDVLELF-SQ 210

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (133), Expect = 1e-08
 Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 11/91 (12%)

Query: 87  VESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP------IGSLSRLEILDLS 140
           ++S+++   +LS    +++       + + L +   T          +     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 141 NNMLSGKIPEEIGSF-----SGLKVLDLGGN 166
           +N L       +          ++ L L   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (129), Expect = 4e-08
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 277 SLVSFDLSDNYLSGEIPEEVI-QLQNLEILHLFSNNFTGK----IPSSLASMPKLQVLQL 331
            + S D+    LS     E++  LQ  +++ L     T      I S+L   P L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 332 WSNQFSGEIPSNLGK-----QNNLTVIDLS 356
            SN+        + +        +  + L 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 9e-08
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 5/93 (5%)

Query: 466 SDQLENLDLSENRFSGT-IPRSFGRLSELMQLKISRNKL----FGDIPEELSSCKKLVSL 520
           S  +++LD+     S          L +   +++    L      DI   L     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 521 DLSNNQLSGHIPASLSEMPVLGQLDLSENQLSG 553
           +L +N+L       + +        + +  L  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 5e-07
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 13/95 (13%)

Query: 248 FGNLSNLRYLFLYQNKLTG----SIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQ----- 298
               S LR L+L    ++     S+  ++L   SL   DLS+N L      ++++     
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 299 LQNLEILHLFSNNFTGKIPSSLASM----PKLQVL 329
              LE L L+   ++ ++   L ++    P L+V+
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 8e-07
 Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 301 NLEILHLFSNNFTGKIPSSLAS-MPKLQVLQLWSNQFSGE----IPSNLGKQNNLTVIDL 355
           +++ L +     +    + L   + + QV++L     +      I S L     L  ++L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 356 STNFLTGKIPETLCDS 371
            +N L       +   
Sbjct: 63  RSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 9e-07
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 492 ELMQLKISRNKL-FGDIPEELSSCKKLVSLDLSNNQLSG----HIPASLSEMPVLGQLDL 546
           ++  L I   +L      E L   ++   + L +  L+      I ++L   P L +L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 547 SENQLSGKIPQTLGRVASLVQVNISHNHFHG 577
             N+L       + +        I       
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 1e-06
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 11/95 (11%)

Query: 60  STHVNAIELSAKNISGKISSSIF-HLPHVESINLSSNQLSGEIPSDI---FSSSNSLRFL 115
           S  + ++++  + +S    + +   L   + + L    L+     DI      + +L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 116 NLSNNNFT--GPVPIGSL-----SRLEILDLSNNM 143
           NL +N     G   +         +++ L L N  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 1e-06
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 13/91 (14%)

Query: 228 TSLNHLDLVYNNLTGQ----IPPSFGNLSNLRYLFLYQNKLTGSIPKSIL-GLKS----L 278
           + L  L L   +++      +  +     +LR L L  N L  +    ++  ++     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 279 VSFDLSDNYLSGEIPEEVIQLQ----NLEIL 305
               L D Y S E+ + +  L+    +L ++
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 2e-06
 Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 25/97 (25%)

Query: 468 QLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQL 527
            L  L L++   S +   S                    +   L +   L  LDLSNN L
Sbjct: 370 VLRVLWLADCDVSDSSCSS--------------------LAATLLANHSLRELDLSNNCL 409

Query: 528 SGHIPASLSE-----MPVLGQLDLSENQLSGKIPQTL 559
                  L E       +L QL L +   S ++   L
Sbjct: 410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 5/91 (5%)

Query: 205 NLKWIYLGYNNLSGEIPKEIGD-LTSLNHLDLVYNNLTGQ----IPPSFGNLSNLRYLFL 259
           +++ + +    LS     E+   L     + L    LT      I  +      L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 260 YQNKLTGSIPKSILGLKSLVSFDLSDNYLSG 290
             N+L       +L      S  +    L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 9/78 (11%)

Query: 300 QNLEILHLFSNNFTGK----IPSSLASMPKLQVLQLWSNQFSGEIPSNLGK-----QNNL 350
             L +L L   + +      + ++L +   L+ L L +N         L +        L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 351 TVIDLSTNFLTGKIPETL 368
             + L   + + ++ + L
Sbjct: 429 EQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 13/91 (14%)

Query: 276 KSLVSFDLSDNYLSGE----IPEEVIQLQNLEILHLFSNNFTGKIPSSLAS-----MPKL 326
             L    L+D  +S      +   ++   +L  L L +N         L          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 327 QVLQLWSNQFSGEIPSNLG----KQNNLTVI 353
           + L L+   +S E+   L      + +L VI
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 4e-06
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 253 NLRYLFLYQNKLTGSIPKSIL-GLKSLVSFDLSDNYLSGE----IPEEVIQLQNLEILHL 307
           +++ L +   +L+ +    +L  L+      L D  L+      I   +     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 308 FSNNFTGKIPSSLASM-----PKLQVLQLWSNQF 336
            SN         +         K+Q L L +   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 5e-06
 Identities = 14/111 (12%), Positives = 26/111 (23%), Gaps = 21/111 (18%)

Query: 134 LEILDLSNNMLSGK-IPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQL 192
           ++ LD+    LS     E +      +V+ L    L                    +   
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL--------------------TEAR 43

Query: 193 IGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQ 243
              I   +     L  + L  N L       +          +   +L   
Sbjct: 44  CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 9e-06
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 13/94 (13%)

Query: 177 SNITSLQIFTLASNQL----IGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGD-----L 227
              + L++  LA   +      S+   +    +L+ + L  N L      ++ +      
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 228 TSLNHLDLVYNNLTGQIPPSFGNLS----NLRYL 257
             L  L L     + ++      L     +LR +
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 322 SMPKLQVLQLWSNQFSGE----IPSNLGKQNNLTVIDLSTNFLTGKIPETLCDS-----G 372
               L+VL L     S      + + L   ++L  +DLS N L       L +S      
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 373 SLFKLILFSNSLEGKIPNSLST 394
            L +L+L+      ++ + L  
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 6e-05
 Identities = 19/105 (18%), Positives = 29/105 (27%), Gaps = 24/105 (22%)

Query: 439 QKWEMTSLQMLNLAGNNFSGKLPDSFGS-----DQLENLDLSENRFSGTIPRSFGRLSEL 493
                + L++L LA  + S     S  +       L  LDLS N            L E 
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ---LVES 420

Query: 494 MQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEM 538
           ++                     L  L L +   S  +   L  +
Sbjct: 421 VR----------------QPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 7e-05
 Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 12/105 (11%)

Query: 49  FCKWNGISCQNSTHVNAIELSAKNISGK----ISSSIFHLPHVESINLSSNQLSGEIPSD 104
             +      Q  + +  + L+  ++S      +++++     +  ++LS+N L       
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 105 IFSS----SNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLS 145
           +  S       L  L L +  ++  +      RL+ L+     L 
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEME----DRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 7e-05
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 9/85 (10%)

Query: 132 SRLEILDLSNNMLSGK----IPEEIGSFSGLKVLDLGGNVLVGEIPLSIS-----NITSL 182
           S L +L L++  +S      +   + +   L+ LDL  N L     L +          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 183 QIFTLASNQLIGSIPREIGQLRNLK 207
           +   L        +   +  L   K
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 9e-05
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 9/80 (11%)

Query: 511 LSSCKKLVSLDLSNNQLSG----HIPASLSEMPVLGQLDLSENQLSGKIPQTLGRV---- 562
                 L  L L++  +S      + A+L     L +LDLS N L       L       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 563 -ASLVQVNISHNHFHGSLPS 581
              L Q+ +   ++   +  
Sbjct: 425 GCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 15/116 (12%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 517 LVSLDLSNNQLS-GHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRV----ASLVQVNIS 571
           + SLD+   +LS       L  +     + L +  L+    + +        +L ++N+ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 572 HNHFHGS-LPSTGAFLAINATAVAGNDLCGGDSTSGLPPCKGNKKNQTWWLVVACF 626
            N      +      L   +  +    L     T        +       L     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 0.001
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 371 SGSLFKLILFSNSL-EGKIPNSLSTCKSLRRVRLQNNRLSGE----LSSEFTRLPLVYFL 425
           S  +  L +    L + +    L   +  + VRL +  L+      +SS     P +  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 426 DISGNDLSGRIGEQ-----KWEMTSLQMLNLAGNNF 456
           ++  N+L            +     +Q L+L     
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 2e-08
 Identities = 26/141 (18%), Positives = 42/141 (29%), Gaps = 3/141 (2%)

Query: 189 SNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEI-GDLTSLNHLDLVYNNLTGQIPPS 247
           +          +    NL  +Y+        +       L  L +L +V + L    P +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 248 FGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLS-GEIPEEVIQLQNLEILH 306
           F     L  L L  N L  S+    +   SL    LS N L        + + +   +  
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGG 134

Query: 307 LFSNNFTGKIPSSLASMPKLQ 327
           +            LA MP   
Sbjct: 135 VPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 11/155 (7%)

Query: 56  SCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFL 115
               S+ +     +           +    ++  + + + Q    +          LR L
Sbjct: 6   CPHGSSGLR---CTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 116 NLSNNNFTGPVPI--GSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIP 173
            +  +      P       RL  L+LS N L   +  +      L+ L L GN L     
Sbjct: 62  TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCA 120

Query: 174 LS-ISNITSLQIFTLASNQLIGSIPREIGQLRNLK 207
           L  +       +  +   +L        G L ++ 
Sbjct: 121 LRWLQRWEEEGLGGVPEQKLQCHGQ---GPLAHMP 152

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 2e-07
 Identities = 30/236 (12%), Positives = 62/236 (26%), Gaps = 8/236 (3%)

Query: 111 SLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVG 170
           S R      +  T  +P         L      L          F  L+ +++  N ++ 
Sbjct: 9   SNRVFLCQESKVTE-IPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 171 EIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLS----GEIPKEIGD 226
            I   + +                               YL  +N       ++ K    
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 227 LTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDN 286
              L  +    N  T +     G       L+L +N +      +  G +        +N
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 287 YLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPS 342
            L     +         IL +            L ++ KL+    ++ +   ++P+
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 9e-06
 Identities = 41/236 (17%), Positives = 68/236 (28%), Gaps = 13/236 (5%)

Query: 89  SINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--IGSLSRLEILDLSNNMLSG 146
                 ++++ EIPSD+  +      L                    LE +++S N +  
Sbjct: 12  VFLCQESKVT-EIPSDLPRN---AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 147 KIPEEIGSFSGLKVLDLGGN-VLVGEIPLSISNITSLQIFTLASNQLIGSIPRE---IGQ 202
            I  ++ S               +  I            + L SN  I  +P        
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 203 LRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQN 262
            + L  I    N  + E    +G       L L  N +      +F             N
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 263 KLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPS 318
            L         G    V  D+S   +   +P     L+NL+ L   S     K+P+
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIH-SLPSYG--LENLKKLRARSTYNLKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 31/231 (13%), Positives = 65/231 (28%), Gaps = 8/231 (3%)

Query: 277 SLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQF 336
           S   F   ++ ++ EIP ++   +N   L             + +    L+ +++  N  
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 337 SGEIPSNLGKQNNLTVIDL--STNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLST 394
              I +++               N L    PE   +  +L  L++ +  ++         
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 395 CKSLRRVRLQNNRLSGELSSEFTRLPLVY--FLDISGNDLSGRIGEQKWEMTSLQMLNLA 452
                 + +Q+N     +              L ++ N +              ++    
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 453 GNNFSGKLPDSFGS-DQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNK 502
            NN      D F        LD+S  R           L +L        K
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 35/223 (15%), Positives = 62/223 (27%), Gaps = 10/223 (4%)

Query: 339 EIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSL 398
           EIPS+L +  N   +      L           G L K+ +  N +   I   + +    
Sbjct: 22  EIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 399 RRVRLQNNRLSGEL--SSEFTRLPLVYFLDISGNDLSGRIGE---QKWEMTSLQMLNLAG 453
                     +        F  LP + +L IS   +            +   L + +   
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 454 NNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSS 513
            +   +      S +   L L++N        +F             N L     +    
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 514 CKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIP 556
               V LD+S  ++       L  +  L         L  K+P
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 38/237 (16%), Positives = 64/237 (27%), Gaps = 10/237 (4%)

Query: 229 SLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYL 288
           S        + +T +IP       N   L     KL      +  G   L   ++S N +
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 289 SGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS----GEIPSNL 344
              I  +V                     +  A      +  L  +        ++    
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 345 GKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQ 404
             Q  L  I  + N  T +    +  S     L L  N ++     + +  +        
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 405 NNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLP 461
           NN L    +  F        LDIS   +          +  L+  +    N   KLP
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 6e-04
 Identities = 30/223 (13%), Positives = 57/223 (25%), Gaps = 6/223 (2%)

Query: 189 SNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQI--PP 246
               +  IP ++   RN   +      L             L  +++  N++   I    
Sbjct: 16  QESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 73

Query: 247 SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILH 306
                          N L    P++   L +L    +S+  +        I      +L 
Sbjct: 74  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 133

Query: 307 LFS--NNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKI 364
           +    N  T +  S +    +  +L L  N                 +     N L    
Sbjct: 134 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELP 193

Query: 365 PETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNR 407
            +    +     L +    +       L   K LR     N +
Sbjct: 194 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 37/223 (16%), Positives = 70/223 (31%), Gaps = 8/223 (3%)

Query: 309 SNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETL 368
            +  T +IPS L        L+    +             +L  I++S N +   I   +
Sbjct: 17  ESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 73

Query: 369 CDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLS----GELSSEFTRLPLVYF 424
             +      I    +      N  +         L  +        ++    +   ++  
Sbjct: 74  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 133

Query: 425 LDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIP 484
           +  + N  +              +L L  N        +F   QL+ L+LS+N     +P
Sbjct: 134 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELP 193

Query: 485 R-SFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQ 526
              F   S  + L ISR ++       L + KKL +    N +
Sbjct: 194 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 7/72 (9%), Positives = 21/72 (29%), Gaps = 1/72 (1%)

Query: 49  FCKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSS 108
             + +  +   +           N+    +           +++S  ++   +PS    +
Sbjct: 165 IQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLEN 223

Query: 109 SNSLRFLNLSNN 120
              LR  +  N 
Sbjct: 224 LKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 27/226 (11%), Positives = 63/226 (27%), Gaps = 7/226 (3%)

Query: 209 IYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSI 268
                + ++ EIP ++    +   L  V   L      +F    +L  + + QN +   I
Sbjct: 13  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 269 PKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFT----GKIPSSLASMP 324
              +      +     +   +              + +L  +N        +    +   
Sbjct: 70  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129

Query: 325 KLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSL 384
            L  +Q   N  + E  S +G      ++ L+ N +          +      +  +N+L
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189

Query: 385 EGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGN 430
           E    +          + +   R+    S     L  +        
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 30/241 (12%), Positives = 54/241 (22%), Gaps = 21/241 (8%)

Query: 50  CKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSS 109
           C      CQ              ++ +I S +    +   +     +L   I    FS  
Sbjct: 8   CSNRVFLCQE-----------SKVT-EIPSDLP--RNAIELRFVLTKLRV-IQKGAFSGF 52

Query: 110 NSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLV 169
             L  + +S N+    +     S L  L       +  +                  +  
Sbjct: 53  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 112

Query: 170 GEIPLSISN------ITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKE 223
             I               L       N         +G       ++L  N +       
Sbjct: 113 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA 172

Query: 224 IGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDL 283
                         NNL       F   S    L + + ++       +  LK L +   
Sbjct: 173 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

Query: 284 S 284
            
Sbjct: 233 Y 233

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 3e-07
 Identities = 27/183 (14%), Positives = 50/183 (27%), Gaps = 46/183 (25%)

Query: 115 LNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPL 174
             L   N T  V    L ++  L      +     + +   + L  ++   N L    PL
Sbjct: 23  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITPL 80

Query: 175 S----------------------------------------ISNITSLQIFTLASNQLIG 194
                                                            +  L  +    
Sbjct: 81  KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 140

Query: 195 SIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNL 254
           S    +  L +L+ +    N ++   P  + +LT+L  LD+  N ++         L+NL
Sbjct: 141 SDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNL 196

Query: 255 RYL 257
             L
Sbjct: 197 ESL 199

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 50.3 bits (118), Expect = 6e-07
 Identities = 44/311 (14%), Positives = 91/311 (29%), Gaps = 33/311 (10%)

Query: 297 IQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGE----IPSNLGKQNNLTV 352
           I+ ++L++  + +      + + L     ++ + L  N    E    +  N+  + +L +
Sbjct: 5   IEGKSLKLDAI-TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 353 IDLSTNFLTGKIPETLCDSGSLFKLILFSNSLE---GKIPNSLSTCKSLRRVRLQNNRLS 409
            + S  F      E       L + +L    L            T +      L  +   
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 410 GELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQL 469
             L      L       I+       + ++      L+ +    N         +     
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 470 ENLDLSENRFSGTIPRSFGRLSELMQLKISRNKL--------------FGDIPEELSSCK 515
            +  L   +      R  G    L++      +L                 +   L S  
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 516 KLVSLDLSNNQLSGHIPASLSEM------PVLGQLDLSENQLSGKIPQTLGRVA-----S 564
            L  L L++  LS    A++ +         L  L L  N++     +TL  V       
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 565 LVQVNISHNHF 575
           L+ + ++ N F
Sbjct: 304 LLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 49.9 bits (117), Expect = 8e-07
 Identities = 39/316 (12%), Positives = 94/316 (29%), Gaps = 20/316 (6%)

Query: 229 SLNHLDLVYNNLTGQ----IPPSFGNLSNLRYLFLYQNKLTG----SIPKSILGLKSLVS 280
           S+    L  + +T +    +        +++ + L  N +       + ++I   K L  
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 281 FDLSDNY---LSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS 337
            + SD +   +  EIPE +  L    +     +       +   +  +  +  L  +   
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 338 GEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKS 397
             +  +           ++       + +   ++  L  +I   N LE       +    
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 398 LRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFS 457
             R+      +   +  E     L+  L          + +  +       L +A  ++ 
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 458 GKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSS---- 513
                      L     +    +     S      L  L++  N++  D    L +    
Sbjct: 244 NLRELGLNDCLLS----ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299

Query: 514 -CKKLVSLDLSNNQLS 528
               L+ L+L+ N+ S
Sbjct: 300 KMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 48/329 (14%), Positives = 97/329 (29%), Gaps = 35/329 (10%)

Query: 106 FS-SSNSLRFLNLSNNNFTG-PVPIGSLSRLEILDLSNNMLSGK----IPEEIGSFSGLK 159
           FS    SL+   ++  +       +     ++ + LS N +  +    + E I S   L+
Sbjct: 3   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 160 VLDLGGN---VLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNL 216
           + +        +  EIP ++  +    +     + +  S        +     +L  +  
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 217 SGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILG-- 274
              +      L       +        +     N   LR +   +N+L     K      
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 275 --LKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHL---------FSNNFTGKIPSSLASM 323
              + L +  +  N +  E  E ++         L         F++  +  +  +L S 
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242

Query: 324 PKLQVLQLWSNQFSGEIPSNLGKQ------NNLTVIDLSTNFLTGKIPETLCDS-----G 372
           P L+ L L     S    + +           L  + L  N +      TL         
Sbjct: 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 373 SLFKLILFSNSL--EGKIPNSLSTCKSLR 399
            L  L L  N    E  + + +    S R
Sbjct: 303 DLLFLELNGNRFSEEDDVVDEIREVFSTR 331

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 39/322 (12%), Positives = 81/322 (25%), Gaps = 19/322 (5%)

Query: 189 SNQLIGSIPREIGQLRNLKWIYLGYNNLSGE----IPKEIGDLTSLNHLDLVYN---NLT 241
           + +   S+   + +  ++K I L  N +  E    + + I     L   +        + 
Sbjct: 16  TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK 75

Query: 242 GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQN 301
            +IP +   L          + +  S        +  +   LS +     +      L  
Sbjct: 76  DEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP 135

Query: 302 LEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLT 361
                +        +     + P L+ +    N+          K      +  +     
Sbjct: 136 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM-- 193

Query: 362 GKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPL 421
                   +      L   +   E K+ +      +          L    +     L  
Sbjct: 194 -VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 252

Query: 422 VYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSD------QLENLDLS 475
                     +       K E   LQ L L  N        +  +        L  L+L+
Sbjct: 253 CLLSARGAAAVVDAFS--KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 310

Query: 476 ENRFSGTIPRSFGRLSELMQLK 497
            NRFS         + E+   +
Sbjct: 311 GNRFSE-EDDVVDEIREVFSTR 331

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.8 bits (109), Expect = 7e-06
 Identities = 38/324 (11%), Positives = 93/324 (28%), Gaps = 34/324 (10%)

Query: 276 KSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGK----IPSSLASMPKLQVLQL 331
           KSL    ++       +   +++  +++ + L  N    +    +  ++AS   L++ + 
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 332 WSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNS 391
                             L    L    L            +  + ++   S    + + 
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 392 LSTCKSLRRVRLQ---NNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWE-MTSLQ 447
                 L                ++ +    P +  +    N L     ++  +   S +
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 448 MLNLAGNNFSGKLPDSFGSDQLENL-------------DLSENRFSGTIPRSFGRLSELM 494
           +L+      +G  P+      LE L             +   +  S  +  +      L 
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 495 QLKISRNKLFGDIPEELSSC------KKLVSLDLSNNQLSGHIPASLSE-----MPVLGQ 543
           +L ++   L       +           L +L L  N++      +L       MP L  
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 544 LDLSENQLSGKIPQTLGRVASLVQ 567
           L+L+ N+   +    +  +  +  
Sbjct: 307 LELNGNRF-SEEDDVVDEIREVFS 329

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.8 bits (109), Expect = 8e-06
 Identities = 46/308 (14%), Positives = 93/308 (30%), Gaps = 33/308 (10%)

Query: 67  ELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDI---FSSSNSLRFLNLSNNNFT 123
            ++ ++    + + +     V+ I LS N +  E    +    +S   L     S+    
Sbjct: 14  AITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72

Query: 124 -----GPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISN 178
                 P  +  L +  +     + +         +     +  L  +  +  + L  + 
Sbjct: 73  RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 132

Query: 179 ITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYN 238
           +       +A      ++ ++      L+ I  G N L     KE       + L     
Sbjct: 133 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 192

Query: 239 NLTGQIPPSFGNLSNLRYLF-------------LYQNKLTGSIPKSILGLKSLVSFDLSD 285
            +   I P       L  L               + +  + ++  ++    +L    L+D
Sbjct: 193 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 252

Query: 286 NYLSGEIPEEVIQ------LQNLEILHLFSNNFTGKIPSSLAS-----MPKLQVLQLWSN 334
             LS      V+          L+ L L  N        +L +     MP L  L+L  N
Sbjct: 253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 312

Query: 335 QFSGEIPS 342
           +FS E   
Sbjct: 313 RFSEEDDV 320

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 12/92 (13%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 42  NWDSSVTFCKWNGISCQNSTHVNAIELSAKNISGKISSSIFH------LPHVESINLSSN 95
           +   +        I+ ++  ++  + L+   +S + ++++           ++++ L  N
Sbjct: 224 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 283

Query: 96  QLSGE----IPSDIFSSSNSLRFLNLSNNNFT 123
           ++  +    + + I      L FL L+ N F+
Sbjct: 284 EIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 11/100 (11%), Positives = 31/100 (31%), Gaps = 12/100 (12%)

Query: 488 GRLSELMQLKISRNKL----FGDIPEELSSCKKLVSLDLSNNQLSG----HIPASLSEMP 539
            R S +    +  + +       +   L     +  + LS N +       +  +++   
Sbjct: 1   ARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 59

Query: 540 VLGQLDLSENQ---LSGKIPQTLGRVASLVQVNISHNHFH 576
            L   + S+     +  +IP+ L  +   +      +   
Sbjct: 60  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 99

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 7e-07
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 3/92 (3%)

Query: 246 PSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEIL 305
             + N    R L L   K+   I      L    + D SDN +          L+ L+ L
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 306 HLFSNNFTGKIPSSLASMPKLQVLQLWSNQFS 337
            + +N           ++P L  L L +N   
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLV 100

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 18/136 (13%), Positives = 46/136 (33%), Gaps = 6/136 (4%)

Query: 78  SSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEIL 137
           ++   +      ++L   ++   I  ++ ++ +    ++ S+N          L RL+ L
Sbjct: 11  AAQYTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTL 68

Query: 138 DLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIP 197
            ++NN +         +   L  L L  N LV    L          +       + +  
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 198 ----REIGQLRNLKWI 209
                 I ++  ++ +
Sbjct: 129 HYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 22/136 (16%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 174 LSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHL 233
              +N    +   L   + I  I      L     I    N +          L  L  L
Sbjct: 12  AQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTL 68

Query: 234 DLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTG-SIPKSILGLKSLVSFDLSD---NYLS 289
            +  N +          L +L  L L  N L        +  LKSL    +         
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 290 GEIPEEVIQLQNLEIL 305
                 + ++  + +L
Sbjct: 129 HYRLYVIYKVPQVRVL 144

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 445 SLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKL- 503
           S Q L+L G       PD    +    L+   +  + T+      + EL+ L +S N+L 
Sbjct: 23  SQQALDLKGLRS---DPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLY 78

Query: 504 -FGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRV 562
              D+   +     L  L+LS N+L         +   L +L L  N LS         +
Sbjct: 79  RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI 138

Query: 563 ASLVQ 567
           +++ +
Sbjct: 139 SAIRE 143

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 4e-05
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 134 LEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQL- 192
            + LDL       +   ++ + +   VL+   ++    + +   NI  L    L++N+L 
Sbjct: 24  QQALDLKGL----RSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLY 78

Query: 193 -IGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNL 251
            +  +   + +  NLK + L  N L  E   +      L  L L  N+L+         +
Sbjct: 79  RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI 138

Query: 252 SNLRYLF 258
           S +R  F
Sbjct: 139 SAIRERF 145

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 5/127 (3%)

Query: 219 EIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSL 278
           ++   +      +   L    L  +  P     +    L   ++ +  ++      +  L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNR-RSSMAATLRIIEENIPEL 67

Query: 279 VSFDLSDNYLSG--EIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQF 336
           +S +LS+N L    ++   V +  NL+IL+L  N    +         KL+ L L  N  
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 337 SGEIPSN 343
           S      
Sbjct: 128 SDTFRDQ 134

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 10/136 (7%)

Query: 138 DLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTL--ASNQLIGS 195
           +L    +  ++   +          L    L      S  ++ +  I  +    + +  +
Sbjct: 3   ELKPEQVE-QLKLIMSKRYDGSQQALDLKGLR-----SDPDLVAQNIDVVLNRRSSMAAT 56

Query: 196 IPREIGQLRNLKWIYLGYNNLSG--EIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSN 253
           +      +  L  + L  N L    ++   +    +L  L+L  N L  +          
Sbjct: 57  LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK 116

Query: 254 LRYLFLYQNKLTGSIP 269
           L  L+L  N L+ +  
Sbjct: 117 LEELWLDGNSLSDTFR 132

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 5e-04
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 5/129 (3%)

Query: 339 EIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSL 398
           ++   + K+ + +   L    L  +    L        L   S+     +         L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPEL 67

Query: 399 RRVRLQNNRLSG--ELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNF 456
             + L NNRL    ++SS   + P +  L++SGN+L       K +   L+ L L GN+ 
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 457 SGKLPDSFG 465
           S    D   
Sbjct: 128 SDTFRDQST 136

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 468 QLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQL 527
             + LDL   R            +  + L    + +   +     +  +L+SL+LSNN+L
Sbjct: 23  SQQALDLKGLRS----DPDLVAQNIDVVLNRRSS-MAATLRIIEENIPELLSLNLSNNRL 77

Query: 528 SGH--IPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGAF 585
                + + + + P L  L+LS N+L  +      +   L ++ +  N    +      +
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 27/173 (15%), Positives = 57/173 (32%), Gaps = 10/173 (5%)

Query: 219 EIPKEIGDLTSLNHLDLVYNNLTGQIPP------SFGNLSNLRYLFLYQNKLTGSIPKSI 272
           +  +   +  S+   +     L G IPP      +   L   ++L L  N +   I  S+
Sbjct: 9   DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SL 66

Query: 273 LGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLW 332
            G+++L    LS      +  E +  + +       S N    +      +    +    
Sbjct: 67  SGMENLRI--LSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSN 124

Query: 333 SNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLE 385
           +   +      L   + L  + L+ N L     E    S    +++    +L+
Sbjct: 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 19/137 (13%), Positives = 42/137 (30%), Gaps = 15/137 (10%)

Query: 692 GKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPD----------VSQFGKLIMHP 741
           G+   S+ +   S        V K   V   +                 ++         
Sbjct: 9   GEGKESAVFNCYS--EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFR 66

Query: 742 NIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPS 801
            + +L G+   +  A+     +     ++ L  +  E   +V   I + +   +      
Sbjct: 67  ALQKLQGLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRG--- 123

Query: 802 VVAGDVSPGKVIVDGKD 818
           +V GD+S   V+V  + 
Sbjct: 124 IVHGDLSQYNVLVSEEG 140

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	966
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.32
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.31
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.3
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.18
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.1
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.09
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.32
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.04
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.78
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.15
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.0
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.86
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	96.33
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.36
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.35
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	90.29
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	88.18

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-46  Score=398.53  Aligned_cols=242  Identities=19%  Similarity=0.335  Sum_probs=187.3

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      +....+|+|+||.||+|+. .++..||||++.. .....++|.+|+..+.+ ++|||||+++|+|.+++..++|||||++
T Consensus         8 ~~~~~iG~G~fg~Vy~~~~-~~~~~vAvK~i~~-~~~~~~~~~~E~~~l~~-l~HpnIv~~~g~~~~~~~~~lv~E~~~~   84 (263)
T d1sm2a_           8 TFVQEIGSGQFGLVHLGYW-LNKDKVAIKTIRE-GAMSEEDFIEEAEVMMK-LSHPKLVQLYGVCLEQAPICLVFEFMEH   84 (263)
T ss_dssp             EEEEEEECCSSCCEEEEEE-TTTEEEEEEECCS-SSSCHHHHHHHHHHHHH-CCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred             EEEEEEeeCCCeEEEEEEE-CCCCEEEEEEECC-CcCcHHHHHHHHHHHHh-cCCCCcccccceeccCCceEEEEEecCC
Confidence            3455679999999999997 6788899998754 33445678999988888 6999999999999999999999999999


Q ss_pred             CCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-------
Q 002105          766 KELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------  834 (966)
Q Consensus       766 g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-------  834 (966)
                      |+|.++++.    ++|..+.+++.|||+||+|||   +.+|+||||||+|||+|+++  .+|++|||++....       
T Consensus        85 g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH---~~~iiHrDlKp~Nill~~~~--~~Kl~DFGla~~~~~~~~~~~  159 (263)
T d1sm2a_          85 GCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQ--VIKVSDFGMTRFVLDDQYTSS  159 (263)
T ss_dssp             CBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCTTCSGGGEEECGGG--CEEECSCC-------------
T ss_pred             CcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhh---ccceeecccchhheeecCCC--CeEecccchheeccCCCceee
Confidence            999999863    789999999999999999999   45899999999999999765  57899999986421       


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ....||+.|||||++.+..|+.|+|||||||++|||+||..|+..... ...+.+.+....   ..   ..|   ...+ 
T Consensus       160 ~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~-~~~~~~~i~~~~---~~---~~p---~~~~-  228 (263)
T d1sm2a_         160 TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS-NSEVVEDISTGF---RL---YKP---RLAS-  228 (263)
T ss_dssp             -----CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCC-HHHHHHHHHHTC---CC---CCC---TTSC-
T ss_pred             cceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCC-HHHHHHHHHhcC---CC---CCc---cccC-
Confidence            224678999999999999999999999999999999996544433222 222222222111   10   111   1111 


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                           .++.+++.+||+.||++||||+||+++|++ ++
T Consensus       229 -----~~l~~li~~cl~~~p~~Rps~~~il~~L~~-i~  260 (263)
T d1sm2a_         229 -----THVYQIMNHCWKERPEDRPAFSRLLRQLAE-IA  260 (263)
T ss_dssp             -----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHH-HH
T ss_pred             -----HHHHHHHHHHccCCHhHCcCHHHHHHHHHH-HH
Confidence                 356788899999999999999999999998 44

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9e-46  Score=401.60  Aligned_cols=243  Identities=19%  Similarity=0.311  Sum_probs=185.7

Q ss_pred             ccCCCCCccEEEEEEEecCCc---EEEEEEEecc-CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          689 TSRGKKGVSSSYKVRSLANDM---QFVVKKIIDV-NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~---~vavk~~~~~-~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ..+|+|+||.||+|+...++.   .||||++... .....++|.+|+..+.+ ++|||||+++|+|.+++..|+|||||+
T Consensus        32 ~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~HpnIv~l~g~~~~~~~~~iv~Ey~~  110 (299)
T d1jpaa_          32 QVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQ-FDHPNVIHLEGVVTKSTPVMIITEFME  110 (299)
T ss_dssp             EEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTT-CCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             eEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHh-CCCCCCccEEEEEeeCCEEEEEEEecC
Confidence            357999999999999866554   5788877543 22334568899988888 699999999999999999999999999


Q ss_pred             CCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          765 GKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       765 ~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      +|+|.++++.    ++|.++.+++.|||+||+|||   +.+||||||||+|||+|.++  .+|++|||++....      
T Consensus       111 ~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHrDlKp~NILl~~~~--~~Kl~DFGla~~~~~~~~~~  185 (299)
T d1jpaa_         111 NGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLA---DMNYVHRDLAARNILVNSNL--VCKVSDFGLSRFLEDDTSDP  185 (299)
T ss_dssp             TEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTC--CEEECCC-------------
T ss_pred             CCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHh---hCCCccCccccceEEECCCC--cEEECCcccceEccCCCCcc
Confidence            9999998863    899999999999999999999   45899999999999999765  47899999986421      


Q ss_pred             -----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccc
Q 002105          835 -----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFI  908 (966)
Q Consensus       835 -----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  908 (966)
                           ....+|+.|||||++.++.|+.++|||||||++|||+| |+.||....  ...+...+.   .+...      ..
T Consensus       186 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~--~~~~~~~i~---~~~~~------~~  254 (299)
T d1jpaa_         186 TYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMT--NQDVINAIE---QDYRL------PP  254 (299)
T ss_dssp             ----------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--HHHHHHHHH---TTCCC------CC
T ss_pred             eeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCC--HHHHHHHHH---cCCCC------CC
Confidence                 11246889999999999999999999999999999998 899986532  222222222   11111      11


Q ss_pred             cCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 002105          909 RGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS  954 (966)
Q Consensus       909 ~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~  954 (966)
                      ...++      .++.+++.+||+.||++||||+||++.|+++++.+
T Consensus       255 ~~~~~------~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~~p  294 (299)
T d1jpaa_         255 PMDCP------SALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRNP  294 (299)
T ss_dssp             CTTCC------HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred             Cccch------HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcCh
Confidence            11122      35677889999999999999999999999977654

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-45  Score=393.73  Aligned_cols=241  Identities=19%  Similarity=0.313  Sum_probs=191.0

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|+||||.||+|+. .++..||||++... ....++|.+|+..+.+ ++|||||+++|+|.+ +..|+|||||++|
T Consensus        17 ~~~~iG~G~fg~Vy~~~~-~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~-l~HpnIv~~~g~~~~-~~~~iv~Ey~~~g   92 (272)
T d1qpca_          17 LVERLGAGQFGEVWMGYY-NGHTKVAVKSLKQG-SMSPDAFLAEANLMKQ-LQHQRLVRLYAVVTQ-EPIYIITEYMENG   92 (272)
T ss_dssp             EEEEEEEETTEEEEEEEE-TTTEEEEEEEECTT-SSCHHHHHHHHHHHHH-CCCTTBCCEEEEECS-SSCEEEEECCTTC
T ss_pred             EeEEEecCCCcEEEEEEE-CCCCEEEEEEEccC-cCCHHHHHHHHHHHHh-CCCCCEeEEEeeecc-CCeEEEEEeCCCC
Confidence            344579999999999997 67888999988543 3345679999998888 699999999998865 5679999999999


Q ss_pred             CHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-------
Q 002105          767 ELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------  834 (966)
Q Consensus       767 ~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-------  834 (966)
                      +|.+++.     .++|..+.+|+.|||+||+|||   ..+||||||||+|||+|++.  .+|++|||++....       
T Consensus        93 ~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH---~~~ivHrDiKp~NIll~~~~--~~Kl~DFGla~~~~~~~~~~~  167 (272)
T d1qpca_          93 SLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTL--SCKIADFGLARLIEDNEYTAR  167 (272)
T ss_dssp             BHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTS--CEEECCCTTCEECSSSCEECC
T ss_pred             cHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccchhheeeeccc--ceeeccccceEEccCCccccc
Confidence            9999874     4899999999999999999999   45899999999999999765  46899999986532       


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                      ....||+.|||||++.++.++.|+|||||||++|||+||..|+.......+ +...+..   +      ..+......+ 
T Consensus       168 ~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~-~~~~i~~---~------~~~~~p~~~~-  236 (272)
T d1qpca_         168 EGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE-VIQNLER---G------YRMVRPDNCP-  236 (272)
T ss_dssp             TTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH-HHHHHHT---T------CCCCCCTTCC-
T ss_pred             cccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHH-HHHHHHh---c------CCCCCcccCh-
Confidence            234678899999999989999999999999999999997666543322222 2222221   1      1111122222 


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                           .++.+++.+||+.||++||||+||+++|+.++.
T Consensus       237 -----~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~ft  269 (272)
T d1qpca_         237 -----EELYQLMRLCWKERPEDRPTFDYLRSVLEDFFT  269 (272)
T ss_dssp             -----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHcCCCHhHCcCHHHHHHHhhhhhh
Confidence                 256778899999999999999999999998654

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-44  Score=389.15  Aligned_cols=240  Identities=18%  Similarity=0.263  Sum_probs=193.6

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      +..+..+|+|+||.||+|++..+|+.||||++........+.+.+|+..+.+ ++|||||++++++.+++..|+|||||+
T Consensus        22 Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~-l~HpnIv~~~~~~~~~~~~~ivmEy~~  100 (293)
T d1yhwa1          22 YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRE-NKNPNIVNYLDSYLVGDELWVVMEYLA  100 (293)
T ss_dssp             BCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHH-CCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred             cEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHh-CCCCCEeeEeEEEEECCEEEEEEEecC
Confidence            4556678999999999999989999999999876554445568888887777 799999999999999999999999999


Q ss_pred             CCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------CC
Q 002105          765 GKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------SK  836 (966)
Q Consensus       765 ~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------~~  836 (966)
                      ||+|.++++  .+++.+...++.||+.||+|||   +.+||||||||+|||++.++  .++++|||++....      ..
T Consensus       101 gg~L~~~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~~iiHrDiKp~NILl~~~~--~vkl~DFG~a~~~~~~~~~~~~  175 (293)
T d1yhwa1         101 GGSLTDVVTETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDG--SVKLTDFGFCAQITPEQSKRST  175 (293)
T ss_dssp             TCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTC--CEEECCCTTCEECCSTTCCBCC
T ss_pred             CCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCcHHHeEECCCC--cEeeccchhheeeccccccccc
Confidence            999999886  4899999999999999999999   55999999999999998654  58999999986532      23


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchH
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ  916 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  916 (966)
                      .+||+.|||||++.+..|+.++||||+||++|||+||+.||.+... .+.+......    ..    .+.......+   
T Consensus       176 ~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~-~~~~~~~~~~----~~----~~~~~~~~~s---  243 (293)
T d1yhwa1         176 MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP-LRALYLIATN----GT----PELQNPEKLS---  243 (293)
T ss_dssp             CCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-HHHHHHHHHH----CS----CCCSSGGGSC---
T ss_pred             cccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCH-HHHHHHHHhC----CC----CCCCCcccCC---
Confidence            4699999999999999999999999999999999999999975321 1212111111    10    0001111111   


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          917 NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       917 ~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         .++.+++.+|++.||++|||++|+++
T Consensus       244 ---~~~~~li~~~L~~dP~~R~s~~eil~  269 (293)
T d1yhwa1         244 ---AIFRDFLNRCLDMDVEKRGSAKELLQ  269 (293)
T ss_dssp             ---HHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             ---HHHHHHHHHHccCChhHCcCHHHHhc
Confidence               24566788999999999999999865

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4e-45  Score=394.04  Aligned_cols=244  Identities=20%  Similarity=0.314  Sum_probs=195.7

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|+|+||.||+|++..+++.||||++.. +....++|.+|+..+.+ ++|||||+++|+|.+++..|+|||||++|
T Consensus        21 ~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~-~~~~~~~~~~E~~il~~-l~HpnIv~~~~~~~~~~~~~iv~E~~~~g   98 (287)
T d1opja_          21 MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKE-IKHPNLVQLLGVCTREPPFYIITEFMTYG   98 (287)
T ss_dssp             EEEETTTTTTSSEEEEEEGGGTEEEEEEECCT-TCSCHHHHHHHHHHHHH-CCCTTBCCEEEEECSSSSCEEEEECCTTC
T ss_pred             EeeEEeeCCCeEEEEEEECCCCeEEEEEEECC-ccchHHHHHHHHHHHHh-CCCCCEecCCccEeeCCeeEEEeecccCc
Confidence            34568999999999999988899999998754 33345678999988888 69999999999999999999999999999


Q ss_pred             CHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC------
Q 002105          767 ELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS------  835 (966)
Q Consensus       767 ~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~------  835 (966)
                      +|.++++     .++|..+..++.|||+||+|||   +.+||||||||+|||+|+++  .+|++|||++.....      
T Consensus        99 ~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH---~~~iiHrDlKp~NILl~~~~--~~Kl~DFG~a~~~~~~~~~~~  173 (287)
T d1opja_          99 NLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENH--LVKVADFGLSRLMTGDTYTAH  173 (287)
T ss_dssp             BHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGG--CEEECCCCCTTTCCSSSSEEE
T ss_pred             chHHHhhhccccchHHHHHHHHHHHHHHHHHHHH---HCCcccCccccCeEEECCCC--cEEEccccceeecCCCCceee
Confidence            9999985     3799999999999999999999   45899999999999999764  579999999864321      


Q ss_pred             -CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcc
Q 002105          836 -KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSS  914 (966)
Q Consensus       836 -~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  914 (966)
                       ...|++.|||||++.+..|+.|+|||||||++|||+||..|+..... ...+.+.+..   +      ..+......+ 
T Consensus       174 ~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~-~~~~~~~i~~---~------~~~~~~~~~~-  242 (287)
T d1opja_         174 AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID-LSQVYELLEK---D------YRMERPEGCP-  242 (287)
T ss_dssp             TTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCC-HHHHHHHHHT---T------CCCCCCTTCC-
T ss_pred             ccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcch-HHHHHHHHhc---C------CCCCCCccch-
Confidence             22468899999999999999999999999999999998777654322 2222222221   1      1111112222 


Q ss_pred             hHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          915 IQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       915 ~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                           .++.+++.+||+.||++||||+||++.|+.+...
T Consensus       243 -----~~l~~li~~cl~~dP~~Rps~~ei~~~L~~~~~~  276 (287)
T d1opja_         243 -----EKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE  276 (287)
T ss_dssp             -----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTSS
T ss_pred             -----HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence                 2567788999999999999999999999985443

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-45  Score=388.38  Aligned_cols=239  Identities=20%  Similarity=0.335  Sum_probs=188.0

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      +....+|+|+||.||+|++..+|+.||||++.... ....+.+.+|+..+.+ ++|||||++++++.+++..|+|||||+
T Consensus         8 ~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~-l~HpnIv~~~~~~~~~~~~~ivmEy~~   86 (271)
T d1nvra_           8 DLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKM-LNHENVVKFYGHRREGNIQYLFLEYCS   86 (271)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHT-CCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred             EEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHh-CCCCCEeeEeeeeccCceeEEEEeccC
Confidence            44556799999999999998899999999986543 2234568889888877 799999999999999999999999999


Q ss_pred             CCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec--------
Q 002105          765 GKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT--------  833 (966)
Q Consensus       765 ~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~--------  833 (966)
                      +|+|.++++   .+++.+...++.||++||+|||   +.+||||||||+|||+++++  .+|++|||++...        
T Consensus        87 gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH---~~~IiHrDiKp~NILl~~~~--~~KL~DFG~a~~~~~~~~~~~  161 (271)
T d1nvra_          87 GGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERL  161 (271)
T ss_dssp             TEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTC--CEEECCCTTCEECEETTEECC
T ss_pred             CCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HcCCccCcccHHHEEECCCC--CEEEccchhheeeccCCcccc
Confidence            999999985   4899999999999999999999   45899999999999998764  5799999998642        


Q ss_pred             CCCCcCCcccccccccCCCCC-CCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          834 DSKSINSSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       834 ~~~~~~~~~y~aPE~~~~~~~-~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                      ....+||+.|||||++.+..+ +.++||||+||++|||+||+.||............+..   ....    ..+  ....
T Consensus       162 ~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~---~~~~----~~~--~~~~  232 (271)
T d1nvra_         162 LNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE---KKTY----LNP--WKKI  232 (271)
T ss_dssp             BCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHT---TCTT----STT--GGGS
T ss_pred             ccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhc---CCCC----CCc--cccC
Confidence            234579999999999988776 57899999999999999999999754332222211111   0000    010  0011


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         .+   ++.+++.+|++.||++|||++||++
T Consensus       233 ---s~---~~~~li~~~L~~dP~~R~t~~eil~  259 (271)
T d1nvra_         233 ---DS---APLALLHKILVENPSARITIPDIKK  259 (271)
T ss_dssp             ---CH---HHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ---CH---HHHHHHHHHcCCChhHCcCHHHHhc
Confidence               12   4556778999999999999999864

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-45  Score=389.35  Aligned_cols=243  Identities=20%  Similarity=0.301  Sum_probs=185.3

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ...+|+|+||.||+|+.   ...||||++...  .....+.|.+|+..+.+ ++|||||+++|++.+ +..++|||||++
T Consensus        13 ~~~lG~G~fg~Vy~~~~---~~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~-l~HpnIv~~~~~~~~-~~~~lv~Ey~~~   87 (276)
T d1uwha_          13 GQRIGSGSFGTVYKGKW---HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK-TRHVNILLFMGYSTA-PQLAIVTQWCEG   87 (276)
T ss_dssp             CSEEEECSSCEEEEEES---SSEEEEEECCCSSCCTTHHHHHHHHHHHHTT-CCCTTBCCEEEEECS-SSCEEEEECCCE
T ss_pred             EEEEeeCCCcEEEEEEE---CCEEEEEEEEcccCCHHHHHHHHHHHHHHHh-CCCCCEeeeeEEEec-cEEEEEEecCCC
Confidence            34579999999999975   235999988543  22334568888888888 699999999999865 568999999999


Q ss_pred             CCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-------
Q 002105          766 KELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-------  834 (966)
Q Consensus       766 g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-------  834 (966)
                      |+|.++++    .++|..+.+++.|||+||+|||   +.+||||||||+|||+|.+.  .+|++|||++....       
T Consensus        88 g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH---~~~ivHrDlKp~NiLl~~~~--~~Kl~DFGla~~~~~~~~~~~  162 (276)
T d1uwha_          88 SSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDL--TVKIGDFGLATVKSRWSGSHQ  162 (276)
T ss_dssp             EEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTS--SEEECCCCCSCC---------
T ss_pred             CCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHh---cCCEeccccCHHHEEEcCCC--CEEEccccceeeccccCCccc
Confidence            99999995    3899999999999999999999   45899999999999999765  46899999985421       


Q ss_pred             -CCCcCCcccccccccCC---CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          835 -SKSINSSAYVAPETKES---KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~---~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                       ....||+.|||||++.+   ..|+.|+|||||||++|||+||+.||.+... ...+...+.........     +.+..
T Consensus       163 ~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~-~~~~~~~~~~~~~~p~~-----~~~~~  236 (276)
T d1uwha_         163 FEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINN-RDQIIFMVGRGYLSPDL-----SKVRS  236 (276)
T ss_dssp             ---CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC-HHHHHHHHHHTSCCCCG-----GGSCT
T ss_pred             ccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCCh-HHHHHHHHhcCCCCCcc-----hhccc
Confidence             23468999999999864   4589999999999999999999999975422 22221222211111000     01111


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      .++      .++.+++.+||+.||++||||+||++.|+.+.+
T Consensus       237 ~~~------~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~  272 (276)
T d1uwha_         237 NCP------KAMKRLMAECLKKKRDERPLFPQILASIELLAR  272 (276)
T ss_dssp             TCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cch------HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            222      356678889999999999999999999998433

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-44  Score=383.55  Aligned_cols=236  Identities=22%  Similarity=0.341  Sum_probs=190.0

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      +....+|+|+||.||+|+...+++.||+|++....   ....+.+.+|+..+.+ ++|||||++++++.+++..|+||||
T Consensus         9 ~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~-l~hpnIv~~~~~~~~~~~~~ivmEy   87 (263)
T d2j4za1           9 EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSH-LRHPNILRLYGYFHDATRVYLILEY   87 (263)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHT-CCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             EEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHh-cCCCCCCeEEEEEEECCEEEEEEee
Confidence            34456799999999999998899999999986432   2233457778877777 7999999999999999999999999


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC----
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS----  835 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~----  835 (966)
                      |++|+|.++++   .+++.....++.||++||+|||   +.+||||||||+|||++.++  .+|++|||++.....    
T Consensus        88 ~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH---~~~ivHrDiKp~Nill~~~~--~~kl~DFG~a~~~~~~~~~  162 (263)
T d2j4za1          88 APLGTVYRELQKLSKFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAG--ELKIADFGWSVHAPSSRRT  162 (263)
T ss_dssp             CTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTS--CEEECCCCSCSCCCCCCCE
T ss_pred             cCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeeeeccccceecCCC--CEeecccceeeecCCCccc
Confidence            99999999986   4899999999999999999999   45899999999999999764  478999999865332    


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...||+.|||||++.+..|+.++|||||||++|||+||+.||.+..  .....+.+.   .       .++.++...+  
T Consensus       163 ~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~--~~~~~~~i~---~-------~~~~~p~~~s--  228 (263)
T d2j4za1         163 TLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANT--YQETYKRIS---R-------VEFTFPDFVT--  228 (263)
T ss_dssp             ETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSS--HHHHHHHHH---T-------TCCCCCTTSC--
T ss_pred             ccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCC--HHHHHHHHH---c-------CCCCCCccCC--
Confidence            2468999999999999999999999999999999999999997542  111111111   1       1111111222  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       +   ++.+++.+|++.||++|||++||++
T Consensus       229 -~---~~~~li~~~L~~dp~~R~t~~eil~  254 (263)
T d2j4za1         229 -E---GARDLISRLLKHNPSQRPMLREVLE  254 (263)
T ss_dssp             -H---HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -H---HHHHHHHHHccCCHhHCcCHHHHHc
Confidence             2   4566788999999999999999975

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-44  Score=387.08  Aligned_cols=239  Identities=18%  Similarity=0.284  Sum_probs=192.4

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      +.+..+|+|+||.||+|+...+|..||||++........+.|.+|+..+.+ ++|||||++++++.+++..|+|||||++
T Consensus        15 ~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~-l~HpnIv~l~~~~~~~~~~~lvmEy~~~   93 (288)
T d2jfla1          15 EIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILAS-CDHPNIVKLLDAFYYENNLWILIEFCAG   93 (288)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHH-CCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred             EEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHh-CCCCCCCeEEEEEeeCCeEEEEEecCCC
Confidence            345568999999999999988999999999876655566788999988887 7999999999999999999999999999


Q ss_pred             CCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------CC
Q 002105          766 KELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------DS  835 (966)
Q Consensus       766 g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------~~  835 (966)
                      |+|.+++.    .+++.++..++.||++||+|||   +.+||||||||+|||++.++  .+|++|||++...      ..
T Consensus        94 g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH---~~~ivHrDiKp~NIll~~~~--~~Kl~DFG~a~~~~~~~~~~~  168 (288)
T d2jfla1          94 GAVDAVMLELERPLTESQIQVVCKQTLDALNYLH---DNKIIHRDLKAGNILFTLDG--DIKLADFGVSAKNTRTIQRRD  168 (288)
T ss_dssp             EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTS--CEEECCCTTCEECHHHHHHHT
T ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEEEeecChhheeECCCC--CEEEEechhhhccCCCccccc
Confidence            99999874    3899999999999999999999   45899999999999999765  4789999998542      24


Q ss_pred             CCcCCcccccccccC-----CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          836 KSINSSAYVAPETKE-----SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~-----~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                      ...||+.|||||++.     ...|+.|+|||||||++|||+||+.||.+.. ..+........    . ......|   .
T Consensus       169 ~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~-~~~~~~~i~~~----~-~~~~~~~---~  239 (288)
T d2jfla1         169 SFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELN-PMRVLLKIAKS----E-PPTLAQP---S  239 (288)
T ss_dssp             CCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSC-GGGHHHHHHHS----C-CCCCSSG---G
T ss_pred             ccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCC-HHHHHHHHHcC----C-CCCCCcc---c
Confidence            567999999999873     5668999999999999999999999997542 22222122111    0 0000000   1


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ..   .   .++.+++.+||+.||++|||++|+++
T Consensus       240 ~~---s---~~~~~li~~~L~~dp~~R~t~~ell~  268 (288)
T d2jfla1         240 RW---S---SNFKDFLKKCLEKNVDARWTTSQLLQ  268 (288)
T ss_dssp             GS---C---HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             cC---C---HHHHHHHHHHccCChhHCcCHHHHhc
Confidence            11   1   24567788999999999999999865

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-44  Score=388.90  Aligned_cols=244  Identities=20%  Similarity=0.312  Sum_probs=188.5

Q ss_pred             cCCCCCccEEEEEEEecCC----cEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          690 SRGKKGVSSSYKVRSLAND----MQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~----~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .+|+||||.||+|....++    ..||||++.... .....+|.+|+..+.+ ++|||||+++|+|.+++..++|||||+
T Consensus        14 ~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~-l~H~nIv~~~g~~~~~~~~~~v~e~~~   92 (283)
T d1mqba_          14 VIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQ-FSHHNIIRLEGVISKYKPMMIITEYME   92 (283)
T ss_dssp             EEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHT-CCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred             EEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHh-cCCCCEeeeeEEEecCCceEEEEEecc
Confidence            4688999999999976544    469999986432 2233468889988888 699999999999999999999999999


Q ss_pred             CCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          765 GKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       765 ~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      +|++.+++.    .++|.++.+++.|||.||+|||   +.+||||||||+|||+|.++  .+|++|||++....      
T Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH---~~~iiHrDlKp~NILl~~~~--~~Kl~DFGla~~~~~~~~~~  167 (283)
T d1mqba_          93 NGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNL--VCKVSDFGLSRVLEDDPEAT  167 (283)
T ss_dssp             TEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTC--CEEECCCCC-----------
T ss_pred             cCcchhhhhcccccccHHHHHHHHHHHHHhhhhcc---ccccccCccccceEEECCCC--eEEEcccchhhcccCCCccc
Confidence            999998875    4899999999999999999999   45899999999999999765  57899999986421      


Q ss_pred             ---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCC
Q 002105          835 ---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGH  911 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  911 (966)
                         ....||+.|||||++.++.++.|+|||||||++|||+||..|+....... .+.+.+.   .+.      .+.....
T Consensus       168 ~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~-~~~~~i~---~~~------~~~~~~~  237 (283)
T d1mqba_         168 YTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH-EVMKAIN---DGF------RLPTPMD  237 (283)
T ss_dssp             ------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-HHHHHHH---TTC------CCCCCTT
T ss_pred             eEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHH-HHHHHHh---ccC------CCCCchh
Confidence               12357889999999999999999999999999999999776655432222 2222222   111      1111111


Q ss_pred             CcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCC
Q 002105          912 VSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISS  955 (966)
Q Consensus       912 ~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~~  955 (966)
                      .+      .++.+++.+||+.||++||||+||+++|+++++.++
T Consensus       238 ~~------~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~~p~  275 (283)
T d1mqba_         238 CP------SAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPD  275 (283)
T ss_dssp             CB------HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGG
T ss_pred             hH------HHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhhCcc
Confidence            22      356778899999999999999999999999776554

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-44  Score=386.36  Aligned_cols=242  Identities=24%  Similarity=0.307  Sum_probs=180.6

Q ss_pred             cccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEec--CCeeEEE
Q 002105          684 TEENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS--EKAAYLV  759 (966)
Q Consensus       684 ~~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~--~~~~~lv  759 (966)
                      +++.+..+|+|+||.||+|+...+|+.||||++....  ....+.+.+|+..+.+ ++|||||++++++.+  ++..|+|
T Consensus         5 dy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~-l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           5 DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRE-LKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTS-CCCTTBCCEEEEEEC----CEEEE
T ss_pred             hCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHH-CCCCCEeeEEEEEEeCCCCEEEEE
Confidence            3455667899999999999998999999999986442  2223457788877777 799999999999864  4668999


Q ss_pred             EEccCCCCHHHHHH-------cCCHHHHHHHHHHHHHHHHHHhhcC--CCCeEeecCCCCcEEEcCCCCceEEEeccccc
Q 002105          760 YEYIEGKELSEVLR-------NLSWERRRKVAIGIAKALRFLHFHC--SPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA  830 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~-------~l~~~~~~~i~~~ia~~l~yLH~~~--~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~  830 (966)
                      ||||++|+|.++++       .+++...+.++.||+.||+|||+..  ..+||||||||+|||++.++  .+|++|||++
T Consensus        84 mEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~--~vkl~DFG~a  161 (269)
T d2java1          84 MEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQ--NVKLGDFGLA  161 (269)
T ss_dssp             EECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTS--CEEECCHHHH
T ss_pred             EecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCC--cEEEeeccce
Confidence            99999999999985       3899999999999999999999642  24699999999999999764  5799999998


Q ss_pred             eec------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccc
Q 002105          831 YCT------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWV  904 (966)
Q Consensus       831 ~~~------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  904 (966)
                      ...      .....||+.|||||++.+..|+.|+|||||||++|||+||+.||.+..  ...+...+..    ...    
T Consensus       162 ~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~--~~~~~~~i~~----~~~----  231 (269)
T d2java1         162 RILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFS--QKELAGKIRE----GKF----  231 (269)
T ss_dssp             HHC-----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHH----TCC----
T ss_pred             eecccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCC--HHHHHHHHHc----CCC----
Confidence            542      233578999999999999999999999999999999999999997532  1212121111    111    


Q ss_pred             cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          905 DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       905 d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       +.+...++   +   ++.+++.+||+.||++|||++|+++
T Consensus       232 -~~~~~~~s---~---~l~~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         232 -RRIPYRYS---D---ELNEIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             -CCCCTTSC---H---HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -CCCCcccC---H---HHHHHHHHHcCCChhHCcCHHHHHh
Confidence             11112222   2   4567778999999999999999864

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-44  Score=386.87  Aligned_cols=239  Identities=18%  Similarity=0.277  Sum_probs=189.2

Q ss_pred             cCCCCCccEEEEEEEe--cCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          690 SRGKKGVSSSYKVRSL--ANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~--~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      .+|+|+||.||+|...  .++..||||++.... ....++|.+|+..+.+ ++|||||+++|+|.+ +..|+|||||++|
T Consensus        16 ~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~-l~HpnIv~l~g~~~~-~~~~lvmE~~~~g   93 (285)
T d1u59a_          16 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQ-LDNPYIVRLIGVCQA-EALMLVMEMAGGG   93 (285)
T ss_dssp             EEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHH-CCCTTBCCEEEEEES-SSEEEEEECCTTE
T ss_pred             EEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHh-CCCCCEeeEeeeecc-CeEEEEEEeCCCC
Confidence            3699999999999764  345579999986443 2334568899988888 699999999999975 4589999999999


Q ss_pred             CHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--------
Q 002105          767 ELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--------  834 (966)
Q Consensus       767 ~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--------  834 (966)
                      +|.+++.    .++|..+.+++.|||+||+|||   +.+||||||||+||+++.+.  .+|++|||++....        
T Consensus        94 ~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH---~~~iiHrDlKp~Nill~~~~--~~Kl~DFGla~~~~~~~~~~~~  168 (285)
T d1u59a_          94 PLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRH--YAKISDFGLSKALGADDSYYTA  168 (285)
T ss_dssp             EHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETT--EEEECCCTTCEECTTCSCEECC
T ss_pred             cHHHHhhccccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCcCchhheeeccCC--ceeeccchhhhccccccccccc
Confidence            9999984    3899999999999999999999   45899999999999999654  67999999986422        


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                       ....||+.|||||++.++.++.|+|||||||++|||+| |+.||.... .. .+...+.   .+..      +.++..+
T Consensus       169 ~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~-~~-~~~~~i~---~~~~------~~~p~~~  237 (285)
T d1u59a_         169 RSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK-GP-EVMAFIE---QGKR------MECPPEC  237 (285)
T ss_dssp             CCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC-TH-HHHHHHH---TTCC------CCCCTTC
T ss_pred             ccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCC-HH-HHHHHHH---cCCC------CCCCCcC
Confidence             23457889999999999999999999999999999998 899997542 12 2222221   1111      1111222


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      +      .++.+++.+||+.||++||||.+|+++|+.++.
T Consensus       238 ~------~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~~  271 (285)
T d1u59a_         238 P------PELYALMSDCWIYKWEDRPDFLTVEQRMRACYY  271 (285)
T ss_dssp             C------HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             C------HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            2      256678899999999999999999999998553

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-44  Score=381.28  Aligned_cols=237  Identities=21%  Similarity=0.317  Sum_probs=184.7

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEec----CCeeEEEEEcc
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS----EKAAYLVYEYI  763 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~----~~~~~lv~Ey~  763 (966)
                      .+|+||||.||+|++..++..||+|++....  ....+.|.+|++.+.+ ++|||||+++|+|.+    ++..|+|||||
T Consensus        16 ~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~-l~HpnIv~~~~~~~~~~~~~~~~~ivmE~~   94 (270)
T d1t4ha_          16 EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKG-LQHPNIVRFYDSWESTVKGKKCIVLVTELM   94 (270)
T ss_dssp             EEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTT-CCCTTBCCEEEEEEEESSSCEEEEEEEECC
T ss_pred             EEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHh-CCCCCeeeEEEEEeeccccCCEEEEEEeCC
Confidence            4799999999999998899999999986542  2233457888888877 799999999999865    35689999999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC----C
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS----K  836 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~----~  836 (966)
                      ++|+|.++++   .+++.....++.||++||+|||+. .++||||||||+|||++++ ...+|++|||++.....    .
T Consensus        95 ~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yLH~~-~~~IiHrDiKp~NILl~~~-~~~~Kl~DFGla~~~~~~~~~~  172 (270)
T d1t4ha_          95 TSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGP-TGSVKIGDLGLATLKRASFAKA  172 (270)
T ss_dssp             CSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCSCCCGGGEEESST-TSCEEECCTTGGGGCCTTSBEE
T ss_pred             CCCcHHHHHhccccccHHHHHHHHHHHHHHHHHHHHC-CCCEEeCCcChhhceeeCC-CCCEEEeecCcceeccCCccCC
Confidence            9999999996   489999999999999999999954 3459999999999999742 24589999999865322    3


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchH
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ  916 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  916 (966)
                      .+||+.|||||++.+ .|+.++|||||||++|||+||+.||..... ...+.+.+   ..+..     .+.+....+   
T Consensus       173 ~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~-~~~~~~~i---~~~~~-----~~~~~~~~~---  239 (270)
T d1t4ha_         173 VIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN-AAQIYRRV---TSGVK-----PASFDKVAI---  239 (270)
T ss_dssp             SCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS-HHHHHHHH---TTTCC-----CGGGGGCCC---
T ss_pred             cccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCccc-HHHHHHHH---HcCCC-----CcccCccCC---
Confidence            479999999998865 599999999999999999999999965322 22121111   11111     111111111   


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          917 NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       917 ~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         .++.+++.+||+.||++|||++|+++
T Consensus       240 ---~~~~~li~~~l~~dp~~R~s~~ell~  265 (270)
T d1t4ha_         240 ---PEVKEIIEGCIRQNKDERYSIKDLLN  265 (270)
T ss_dssp             ---HHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ---HHHHHHHHHHccCCHhHCcCHHHHhC
Confidence               24567888999999999999999865

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-44  Score=383.36  Aligned_cols=238  Identities=17%  Similarity=0.245  Sum_probs=186.0

Q ss_pred             cCCCCCccEEEEEEEec--CCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          690 SRGKKGVSSSYKVRSLA--NDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~--~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .+|+|+||.||+|....  .++.||||++....  ....++|.+|+..+.+ ++|||||+++|+|..+ ..+||||||++
T Consensus        14 ~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~-l~HpnIv~~~g~~~~~-~~~lvmE~~~~   91 (277)
T d1xbba_          14 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQ-LDNPYIVRMIGICEAE-SWMLVMEMAEL   91 (277)
T ss_dssp             EEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHT-CCCTTBCCEEEEEESS-SEEEEEECCTT
T ss_pred             CcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHh-CCCCCCceEEEEeccC-CEEEEEEcCCC
Confidence            47999999999998643  34689999985432  2223568899988888 6999999999999754 57899999999


Q ss_pred             CCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--------
Q 002105          766 KELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--------  834 (966)
Q Consensus       766 g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--------  834 (966)
                      |+|.++++.   ++|..+.+++.|||+||+|||   +.+||||||||+|||++.++  .++++|||++....        
T Consensus        92 g~L~~~l~~~~~l~~~~~~~i~~qi~~gl~ylH---~~~iiHrDlKp~Nill~~~~--~~kl~DFGla~~~~~~~~~~~~  166 (277)
T d1xbba_          92 GPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQH--YAKISDFGLSKALRADENYYKA  166 (277)
T ss_dssp             EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETT--EEEECCCTTCEECCTTCSEEEC
T ss_pred             CcHHHHHhhccCCCHHHHHHHHHHHHHHHhhHH---hCCcccCCCcchhhcccccC--cccccchhhhhhcccccccccc
Confidence            999999963   899999999999999999999   45899999999999999654  57899999986421        


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                       ....||+.|||||.+.+..++.++|||||||++|||+| |+.||.+..  ...+.+.+.   .+..      +..+..+
T Consensus       167 ~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~--~~~~~~~i~---~~~~------~~~p~~~  235 (277)
T d1xbba_         167 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK--GSEVTAMLE---KGER------MGCPAGC  235 (277)
T ss_dssp             ----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC--HHHHHHHHH---TTCC------CCCCTTC
T ss_pred             ccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCC--HHHHHHHHH---cCCC------CCCCccc
Confidence             22468899999999999999999999999999999998 899987532  122222221   1111      1111222


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhh
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCF  951 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~  951 (966)
                      +      .++.+++.+||+.||++||||+||+++|+..+
T Consensus       236 ~------~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~~  268 (277)
T d1xbba_         236 P------REMYDLMNLCWTYDVENRPGFAAVELRLRNYY  268 (277)
T ss_dssp             C------HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             C------HHHHHHHHHHcCCCHhHCcCHHHHHHHhhCHH
Confidence            2      25667889999999999999999999998754

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-44  Score=384.74  Aligned_cols=246  Identities=18%  Similarity=0.258  Sum_probs=191.8

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .....+|+|+||.||+|+. .++..||||++.. .....+.|.+|+..+.+ ++|||||+++|+|.+ +..++|||||++
T Consensus        20 ~i~~~iG~G~fg~Vy~~~~-~~~~~vAiK~l~~-~~~~~~~~~~E~~~l~~-l~h~nIv~~~g~~~~-~~~~lv~Ey~~~   95 (285)
T d1fmka3          20 RLEVKLGQGCFGEVWMGTW-NGTTRVAIKTLKP-GTMSPEAFLQEAQVMKK-LRHEKLVQLYAVVSE-EPIYIVTEYMSK   95 (285)
T ss_dssp             EEEEEEEECSSCEEEEEEE-TTTEEEEEEECCT-TSSCHHHHHHHHHHHHH-CCCTTBCCEEEEECS-SSCEEEECCCTT
T ss_pred             EEeeEEeeCCCeEEEEEEE-CCCCEEEEEEECc-ccCCHHHHHHHHHHHHh-cccCCEeEEEEEEec-CCeEEEEEecCC
Confidence            3444579999999999997 6667899999753 34445679999988888 799999999999854 568999999999


Q ss_pred             CCHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          766 KELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       766 g~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      |+|..++.     .++|.++..++.|||.||+|||   ..+|+||||||+|||+|.++  .++++|||++....      
T Consensus        96 g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH---~~~ivH~DlKp~NIll~~~~--~~kl~DfGla~~~~~~~~~~  170 (285)
T d1fmka3          96 GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENL--VCKVADFGLARLIEDNEYTA  170 (285)
T ss_dssp             CBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGG--CEEECCCCTTC---------
T ss_pred             CchhhhhhhcccccchHHHHHHHHHHHHHHHHHHh---hhheecccccceEEEECCCC--cEEEcccchhhhccCCCcee
Confidence            99998885     3899999999999999999999   45899999999999999764  47899999985421      


Q ss_pred             -CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          835 -SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                       ....||+.|||||++..+.++.++|||||||++|||+||..|+.......+. ..++..   +.      .+......+
T Consensus       171 ~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~-~~~i~~---~~------~~~~~~~~~  240 (285)
T d1fmka3         171 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-LDQVER---GY------RMPCPPECP  240 (285)
T ss_dssp             -----CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHH-HHHHHT---TC------CCCCCTTSC
T ss_pred             eccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHH-HHHHHh---cC------CCCCCcccC
Confidence             2246789999999999999999999999999999999977776543332222 233321   11      111112222


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccCCc
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRISSC  956 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~~~  956 (966)
                            .++.+++.+||+.||++||||++|+++|+..+....+
T Consensus       241 ------~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~~~p  277 (285)
T d1fmka3         241 ------ESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEP  277 (285)
T ss_dssp             ------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCC
T ss_pred             ------HHHHHHHHHHcccCHhHCcCHHHHHHHHhhhhcCCCC
Confidence                  2566788999999999999999999999996665443

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-44  Score=392.58  Aligned_cols=243  Identities=22%  Similarity=0.273  Sum_probs=191.3

Q ss_pred             cccccCCCCCccEEEEEEEecCCc-----EEEEEEEecc-CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDM-----QFVVKKIIDV-NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~-----~vavk~~~~~-~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      +....+|+||||.||+|+....+.     .||||++... .......|.+|+..+.++.+|||||+++|+|.+++..|+|
T Consensus        40 ~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv  119 (325)
T d1rjba_          40 EFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLI  119 (325)
T ss_dssp             EEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred             EEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCeEEEE
Confidence            344567999999999999865443     6889988643 3334456888999888865899999999999999999999


Q ss_pred             EEccCCCCHHHHHHc--------------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEE
Q 002105          760 YEYIEGKELSEVLRN--------------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVI  813 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~--------------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nil  813 (966)
                      ||||++|+|.++|+.                          ++|..+..++.|||+||+|||   +.+||||||||+||+
T Consensus       120 ~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH---~~~IiHRDlKp~Nil  196 (325)
T d1rjba_         120 FEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVL  196 (325)
T ss_dssp             EECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCSGGGEE
T ss_pred             EEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCchhccc
Confidence            999999999999952                          789999999999999999999   458999999999999


Q ss_pred             EcCCCCceEEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCch
Q 002105          814 VDGKDEPHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVH  884 (966)
Q Consensus       814 l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~  884 (966)
                      ++.+  ..+|++|||++....        ....||+.|||||++.++.|+.++|||||||++|||+| |+.||.+... .
T Consensus       197 l~~~--~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~-~  273 (325)
T d1rjba_         197 VTHG--KVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV-D  273 (325)
T ss_dssp             EETT--TEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC-S
T ss_pred             cccC--CeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCH-H
Confidence            9965  468999999986421        23356899999999999999999999999999999998 8999975432 2


Q ss_pred             hhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          885 ESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       885 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      +.+.+.+..   +.      .+......+      .++.+++.+||+.||++||||+||++.|..
T Consensus       274 ~~~~~~~~~---~~------~~~~p~~~~------~~l~~li~~cl~~dP~~RPt~~ei~~~L~~  323 (325)
T d1rjba_         274 ANFYKLIQN---GF------KMDQPFYAT------EEIYIIMQSCWAFDSRKRPSFPNLTSFLGC  323 (325)
T ss_dssp             HHHHHHHHT---TC------CCCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             HHHHHHHhc---CC------CCCCCCcCC------HHHHHHHHHHcCCChhHCcCHHHHHHHHhC
Confidence            222222221   11      111111222      256778899999999999999999999964

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-43  Score=374.53  Aligned_cols=239  Identities=18%  Similarity=0.311  Sum_probs=193.9

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      +....+|+|+||.||+|+. .++..||||++... ....++|.+|+..+.+ ++|||||+++|+|.+++..++||||+++
T Consensus         7 ~~~~~iG~G~fg~Vy~~~~-~~~~~vAvK~l~~~-~~~~~~~~~Ev~~~~~-l~HpnIv~~~g~~~~~~~~~iv~Ey~~~   83 (258)
T d1k2pa_           7 TFLKELGTGQFGVVKYGKW-RGQYDVAIKMIKEG-SMSEDEFIEEAKVMMN-LSHEKLVQLYGVCTKQRPIFIITEYMAN   83 (258)
T ss_dssp             CCCCCCCEETTEEEEEEEE-TTTEEEEEEEEESS-SSCHHHHHHHHHHHHT-CCCTTBCCEEEEECCSSSEEEEEECCTT
T ss_pred             EEeEEEecCCCeEEEEEEE-CCCCEEEEEEECcC-cCCHHHHHHHHHHHHh-cCCCceeeEEEEEeeCCceEEEEEccCC
Confidence            3455689999999999997 68889999998653 3345679999998888 6999999999999999999999999999


Q ss_pred             CCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-------C
Q 002105          766 KELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-------D  834 (966)
Q Consensus       766 g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-------~  834 (966)
                      |+|.+++.    .++|..+.+++.|||+||+|||   +.+|+||||||+||++|++.  .+|++|||++...       .
T Consensus        84 g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH---~~~iiH~dlk~~Nill~~~~--~~kl~DfG~a~~~~~~~~~~~  158 (258)
T d1k2pa_          84 GCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQG--VVKVSDFGLSRYVLDDEYTSS  158 (258)
T ss_dssp             EEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTBCCSCCSGGGEEECTTC--CEEECCCSSCCBCSSSSCCCC
T ss_pred             CcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHh---hcCcccccccceeEEEcCCC--cEEECcchhheeccCCCceee
Confidence            99999975    4899999999999999999999   45899999999999999754  5789999998542       1


Q ss_pred             CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          835 SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      ....+|+.|||||.+.+..++.|+|||||||++|||+| |+.||....  ...+...+.   .....   ..|   ...+
T Consensus       159 ~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~--~~~~~~~i~---~~~~~---~~p---~~~~  227 (258)
T d1k2pa_         159 VGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFT--NSETAEHIA---QGLRL---YRP---HLAS  227 (258)
T ss_dssp             CCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC--HHHHHHHHH---TTCCC---CCC---TTCC
T ss_pred             cccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCC--HHHHHHHHH---hCCCC---CCc---cccc
Confidence            23457889999999999999999999999999999998 899987542  222212121   11111   111   1122


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                            .++.+++.+||+.||++||||+||++.|.+
T Consensus       228 ------~~l~~li~~cl~~dP~~RPt~~eil~~L~d  257 (258)
T d1k2pa_         228 ------EKVYTIMYSCWHEKADERPTFKILLSNILD  257 (258)
T ss_dssp             ------HHHHHHHHHTTCSSGGGSCCHHHHHHHHHC
T ss_pred             ------HHHHHHHHHHccCCHhHCcCHHHHHHHhhC
Confidence                  356778899999999999999999999875

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.6e-43  Score=384.74  Aligned_cols=242  Identities=21%  Similarity=0.290  Sum_probs=180.4

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      +....+|+|+||.||+|+...+|+.||||++.... ....+.+.+|+..+.+ ++|||||++++++.+++..|+|||||+
T Consensus        12 ~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~-l~HpnIv~l~~~~~~~~~~~lvmE~~~   90 (307)
T d1a06a_          12 DFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHK-IKHPNIVALDDIYESGGHLYLIMQLVS   90 (307)
T ss_dssp             EEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHT-CCCTTBCCEEEEEECSSEEEEEECCCC
T ss_pred             EEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHh-CCCCCCCcEEEEEEECCEEEEEEeccC
Confidence            34456799999999999998899999999986543 2234567788888877 699999999999999999999999999


Q ss_pred             CCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcC-CCCceEEEeccccceecC-----C
Q 002105          765 GKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDG-KDEPHLRLSVPGLAYCTD-----S  835 (966)
Q Consensus       765 ~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~-~~~~~~~~~~~~~~~~~~-----~  835 (966)
                      ||+|.+++.   .+++.+...++.||+.||+|||   +.+||||||||+||++.. +....++++|||++....     .
T Consensus        91 gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~~  167 (307)
T d1a06a_          91 GGELFDRIVEKGFYTERDASRLIFQVLDAVKYLH---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLS  167 (307)
T ss_dssp             SCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCC-------------
T ss_pred             CCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhhh---hceeeeEEecccceeecccCCCceEEEeccceeEEccCCCeee
Confidence            999999996   3899999999999999999999   558999999999999964 234678999999986432     3


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ..+||+.|||||++.+..|+.++||||+||++|||+||+.||.+...  ......+.   .. ...  .++......+  
T Consensus       168 ~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~--~~~~~~i~---~~-~~~--~~~~~~~~~s--  237 (307)
T d1a06a_         168 TACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDEND--AKLFEQIL---KA-EYE--FDSPYWDDIS--  237 (307)
T ss_dssp             -----CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHH---TT-CCC--CCTTTTTTSC--
T ss_pred             eeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCH--HHHHHHHh---cc-CCC--CCCccccCCC--
Confidence            35799999999999999999999999999999999999999975421  11111111   11 100  1111111222  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                          .++.+++.+|++.||++|||++|+++
T Consensus       238 ----~~~~~li~~~L~~dP~~R~s~~eil~  263 (307)
T d1a06a_         238 ----DSAKDFIRHLMEKDPEKRFTCEQALQ  263 (307)
T ss_dssp             ----HHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             ----HHHHHHHHHHccCCHhHCcCHHHHhc
Confidence                24667788999999999999999876

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-44  Score=391.08  Aligned_cols=191  Identities=20%  Similarity=0.342  Sum_probs=165.1

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ++.+..+|+|+||.||+|++..+|..||+|++.... ....+.+.+|+..+.+ ++|||||+++++|.+++..|+|||||
T Consensus         8 y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~-l~HpnIv~l~~~~~~~~~~~iVmEy~   86 (322)
T d1s9ja_           8 FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHE-CNSPYIVGFYGAFYSDGEISICMEHM   86 (322)
T ss_dssp             EEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGG-CCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             CEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHh-CCCCCCCcEEEEEEECCEEEEEEEcC
Confidence            455667899999999999998899999999986432 2233457788877776 79999999999999999999999999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee----cCCC
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC----TDSK  836 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~----~~~~  836 (966)
                      +||+|.++++   .+++.....++.|+++||+|||+.  .+||||||||+|||++.++  .+|++|||++..    ....
T Consensus        87 ~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~--~~IiHRDiKP~NILl~~~~--~vkl~DFGla~~~~~~~~~~  162 (322)
T d1s9ja_          87 DGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRG--EIKLCDFGVSGQLIDSMANS  162 (322)
T ss_dssp             TTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTC--CEEECCCCCCHHHHHHTC--
T ss_pred             CCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHh--CCEEccccCHHHeeECCCC--CEEEeeCCCccccCCCcccc
Confidence            9999999996   499999999999999999999952  2799999999999998664  579999999864    2345


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCC
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADAD  880 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~  880 (966)
                      .+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.
T Consensus       163 ~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~  206 (322)
T d1s9ja_         163 FVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP  206 (322)
T ss_dssp             -CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCC
T ss_pred             ccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            68999999999999999999999999999999999999999764

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.2e-43  Score=383.61  Aligned_cols=239  Identities=22%  Similarity=0.296  Sum_probs=189.3

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc---ccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ++.+..+|+|+||.||+|+...+|..||||++.......   .+.+.+|+..+.+ ++|||||+++|++.+++..|+|||
T Consensus        17 y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~-l~HpnIv~~~~~~~~~~~~~iv~E   95 (309)
T d1u5ra_          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQK-LRHPNTIQYRGCYLREHTAWLVME   95 (309)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTT-CCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHH-CCCCCEeeEEEEEEECCEEEEEEE
Confidence            345667899999999999998899999999986543222   2457888888887 799999999999999999999999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec--CCC
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT--DSK  836 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~--~~~  836 (966)
                      ||++|+|..++.   .++|.++..++.||+.||+|||   +.+||||||||+|||++.+  ..+|++|||++...  ...
T Consensus        96 ~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH---~~~iiHrDiKp~NILl~~~--~~~Kl~DFG~a~~~~~~~~  170 (309)
T d1u5ra_          96 YCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEP--GLVKLGDFGSASIMAPANS  170 (309)
T ss_dssp             CCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETT--TEEEECCCTTCBSSSSBCC
T ss_pred             ecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEECCC--CCEEEeecccccccCCCCc
Confidence            999999987764   4899999999999999999999   4589999999999999965  46799999998653  344


Q ss_pred             CcCCcccccccccCC---CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          837 SINSSAYVAPETKES---KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~---~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      ..||+.|||||++.+   +.|+.++|||||||++|||+||+.||.+... .+.+..    ......     .+.....++
T Consensus       171 ~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~-~~~~~~----i~~~~~-----~~~~~~~~s  240 (309)
T d1u5ra_         171 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA-MSALYH----IAQNES-----PALQSGHWS  240 (309)
T ss_dssp             CCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-HHHHHH----HHHSCC-----CCCSCTTSC
T ss_pred             cccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCH-HHHHHH----HHhCCC-----CCCCCCCCC
Confidence            679999999999854   4689999999999999999999999865321 111111    111110     011111222


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         +   ++.+++.+||+.||++|||++|+++
T Consensus       241 ---~---~~~~li~~~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         241 ---E---YFRNFVDSCLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             ---H---HHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             ---H---HHHHHHHHHCcCChhHCcCHHHHHh
Confidence               2   4667788999999999999999864

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=3.6e-43  Score=388.58  Aligned_cols=243  Identities=20%  Similarity=0.321  Sum_probs=195.4

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      +.....+|+||||.||+|+...+|..||||++........+.+.+|+..+.+ ++|||||++++++.+++..|+|||||+
T Consensus        28 Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~-l~HpnIv~~~~~~~~~~~~~ivmE~~~  106 (350)
T d1koaa2          28 YDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSV-LRHPTLVNLHDAFEDDNEMVMIYEFMS  106 (350)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHH-TCCTTBCCEEEEEEETTEEEEEECCCC
T ss_pred             eEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHh-CCCCCCCcEEEEEEECCEEEEEEEcCC
Confidence            3445668999999999999988999999999866544445567888888877 699999999999999999999999999


Q ss_pred             CCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-----
Q 002105          765 GKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----  835 (966)
Q Consensus       765 ~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-----  835 (966)
                      ||+|.+++.    .+++.....++.||+.||+|||   +.+||||||||+|||++.+....+|++|||++.....     
T Consensus       107 gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH---~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~  183 (350)
T d1koaa2         107 GGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVK  183 (350)
T ss_dssp             SCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCEE
T ss_pred             CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---hcCCeeeeechhHeeeccCCCCeEEEeecchheecccccccc
Confidence            999999994    3899999999999999999999   4599999999999999866667799999999875432     


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...||+.|||||++.+..|+.++||||+||++|||+||+.||.+.. ..+.. .-+...  ...    .++......+  
T Consensus       184 ~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~-~~~~~-~~i~~~--~~~----~~~~~~~~~s--  253 (350)
T d1koaa2         184 VTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEN-DDETL-RNVKSC--DWN----MDDSAFSGIS--  253 (350)
T ss_dssp             EECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHH-HHHHHT--CCC----SCCGGGGGCC--
T ss_pred             eecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCC-HHHHH-HHHHhC--CCC----CCcccccCCC--
Confidence            2468999999999999999999999999999999999999997542 12211 111110  100    1111111111  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       +   ++.+++.+|++.||++|||++|+++
T Consensus       254 -~---~~~~li~~~L~~dP~~R~t~~eil~  279 (350)
T d1koaa2         254 -E---DGKDFIRKLLLADPNTRMTIHQALE  279 (350)
T ss_dssp             -H---HHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             -H---HHHHHHHHHccCChhHCcCHHHHhc
Confidence             2   4567788999999999999999876

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-43  Score=377.87  Aligned_cols=237  Identities=18%  Similarity=0.250  Sum_probs=189.1

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ++....+|+|+||.||+|+...+|+.||||++....   ....+.+.+|+..+.+ ++|||||++++++.+++..|+|||
T Consensus        10 y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~-l~HpnIv~l~~~~~~~~~~~ivmE   88 (288)
T d1uu3a_          10 FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR-LDHPFFVKLYFTFQDDEKLYFGLS   88 (288)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHH-CCSTTBCCEEEEEECSSEEEEEEC
T ss_pred             CEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHH-cCCCCeeEEEEEEEECCEEEEEEE
Confidence            344556789999999999998899999999986432   2223457788877777 799999999999999999999999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      ||+||+|.++++   .+++.....++.|++.||+|||   +.+||||||||+|||+++++  .++++|||++....    
T Consensus        89 y~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHrDiKp~NIll~~~~--~vkl~DFG~a~~~~~~~~  163 (288)
T d1uu3a_          89 YAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDM--HIQITDFGTAKVLSPESK  163 (288)
T ss_dssp             CCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTS--CEEECCCTTCEECC----
T ss_pred             ccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhc---cccEEcCcCCccccccCCCc--eEEecccccceecccCCc
Confidence            999999999886   4899999999999999999999   55999999999999999664  57899999986431    


Q ss_pred             ----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                          ...+||+.|||||++.+..|+.++||||+||++|||+||+.||.+..  ...+.+.+   .. ..      +.+..
T Consensus       164 ~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~--~~~~~~~i---~~-~~------~~~p~  231 (288)
T d1uu3a_         164 QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN--EYLIFQKI---IK-LE------YDFPE  231 (288)
T ss_dssp             ------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHH---HT-TC------CCCCT
T ss_pred             ccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcC--HHHHHHHH---Hc-CC------CCCCc
Confidence                23469999999999999999999999999999999999999997542  11111111   11 11      11111


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ..+   +   ++.+++.+|++.||++|||++|+..
T Consensus       232 ~~s---~---~~~~li~~~L~~dP~~R~t~~e~~~  260 (288)
T d1uu3a_         232 KFF---P---KARDLVEKLLVLDATKRLGCEEMEG  260 (288)
T ss_dssp             TCC---H---HHHHHHHTTSCSSGGGSTTSGGGTC
T ss_pred             cCC---H---HHHHHHHHHccCCHhHCcCHHHHcC
Confidence            222   2   4567888999999999999999753

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-43  Score=372.34  Aligned_cols=237  Identities=22%  Similarity=0.323  Sum_probs=183.8

Q ss_pred             cccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEec-CCeeEEEEEccCCC
Q 002105          688 LTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS-EKAAYLVYEYIEGK  766 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~-~~~~~lv~Ey~~~g  766 (966)
                      ...+|+|+||.||+|+.  .|..||||++...  ...++|.+|++.+.+ ++|||||+++|+|.+ ++..|+||||+++|
T Consensus        12 ~~~lG~G~fg~Vy~~~~--~~~~vAvK~i~~~--~~~~~~~~E~~~l~~-l~HpnIv~~~g~~~~~~~~~~lv~ey~~~g   86 (262)
T d1byga_          12 LQTIGKGEFGDVMLGDY--RGNKVAVKCIKND--ATAQAFLAEASVMTQ-LRHSNLVQLLGVIVEEKGGLYIVTEYMAKG   86 (262)
T ss_dssp             EEEEEECSSCEEEEEEE--TTEEEEEEECCCC--C--HHHHHTHHHHTT-CCCTTBCCEEEEECCC--CCEEEECCCTTE
T ss_pred             eEEEecCCCeEEEEEEE--CCeEEEEEEECcH--HHHHHHHHHHHHHHh-CCCCCEeeEEEEEEecCCcEEEEEeccCCC
Confidence            34579999999999986  5789999998543  344678999988888 699999999999965 45689999999999


Q ss_pred             CHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec---CCCCc
Q 002105          767 ELSEVLR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT---DSKSI  838 (966)
Q Consensus       767 ~L~~~l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~---~~~~~  838 (966)
                      +|.++++     .++|..+++++.|||.||+|||   +.+||||||||+||+++.++  .++++|||.+...   .....
T Consensus        87 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH---~~~ivH~dlkp~Nil~~~~~--~~kl~dfg~s~~~~~~~~~~~  161 (262)
T d1byga_          87 SLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDN--VAKVSDFGLTKEASSTQDTGK  161 (262)
T ss_dssp             EHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTS--CEEECCCCC------------
T ss_pred             CHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccc---cCceeccccchHhheecCCC--CEeecccccceecCCCCcccc
Confidence            9999985     2899999999999999999999   55899999999999999765  4688999988652   23346


Q ss_pred             CCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchHH
Q 002105          839 NSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQN  917 (966)
Q Consensus       839 ~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  917 (966)
                      +|+.|||||++.+..++.++|||||||++|||+| |+.|+...  ....+..++..    .     ..|.+....+    
T Consensus       162 ~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~--~~~~~~~~i~~----~-----~~~~~~~~~~----  226 (262)
T d1byga_         162 LPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI--PLKDVVPRVEK----G-----YKMDAPDGCP----  226 (262)
T ss_dssp             CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS--CGGGHHHHHTT----T-----CCCCCCTTCC----
T ss_pred             ccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHc----C-----CCCCCCccCC----
Confidence            7889999999999999999999999999999999 67777643  22233333321    1     1111211222    


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          918 EIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       918 ~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                        .++.+++.+||+.||++||||.||+++|++ ++
T Consensus       227 --~~~~~li~~cl~~dP~~Rps~~~l~~~L~~-i~  258 (262)
T d1byga_         227 --PAVYEVMKNCWHLDAAMRPSFLQLREQLEH-IK  258 (262)
T ss_dssp             --HHHHHHHHHHTCSSGGGSCCHHHHHHHHHH-HH
T ss_pred             --HHHHHHHHHHcccCHhHCcCHHHHHHHHHH-HH
Confidence              256678889999999999999999999998 55

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-42  Score=375.20  Aligned_cols=242  Identities=22%  Similarity=0.321  Sum_probs=191.8

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc------cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI------TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~------~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      +....+|+|+||.||+|+...+|+.||||++......      ..+.+.+|+..+.+ ++|||||++++++.+++..|+|
T Consensus        13 ~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~-l~HpnIv~~~~~~~~~~~~~iv   91 (293)
T d1jksa_          13 DTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKE-IQHPNVITLHEVYENKTDVILI   91 (293)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHH-CCCTTBCCEEEEEECSSEEEEE
T ss_pred             EEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHh-CCCCCCCcEEEEEEECCEEEEE
Confidence            3445679999999999999889999999998643221      12457788888877 6999999999999999999999


Q ss_pred             EEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC--ceEEEeccccceecC
Q 002105          760 YEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE--PHLRLSVPGLAYCTD  834 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~--~~~~~~~~~~~~~~~  834 (966)
                      ||||++|+|.++++   .+++.....++.|++.||+|||   +.+||||||||+||+++.++.  ..++++|||++....
T Consensus        92 ~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH---~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~  168 (293)
T d1jksa_          92 LELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID  168 (293)
T ss_dssp             EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECT
T ss_pred             EEcCCCccccchhccccccchhHHHHHHHHHHHHHHhhh---hcceeecccccceEEEecCCCcccceEecchhhhhhcC
Confidence            99999999999996   4999999999999999999999   558999999999999986653  468999999986532


Q ss_pred             -----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccccc
Q 002105          835 -----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIR  909 (966)
Q Consensus       835 -----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  909 (966)
                           ....||+.|||||++.+..++.++|||||||++|||+||+.||.+.. ..+.. +.+.   .. ...  ..+...
T Consensus       169 ~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~-~~~~~-~~i~---~~-~~~--~~~~~~  240 (293)
T d1jksa_         169 FGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDT-KQETL-ANVS---AV-NYE--FEDEYF  240 (293)
T ss_dssp             TSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHH-HHHH---TT-CCC--CCHHHH
T ss_pred             CCccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCC-HHHHH-HHHH---hc-CCC--CCchhc
Confidence                 23478999999999999999999999999999999999999997542 11111 1111   11 000  111111


Q ss_pred             CCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          910 GHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       910 ~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ...+      .++.+++.+||+.||++|||++|+++
T Consensus       241 ~~~s------~~~~~li~~~L~~dP~~R~s~~eil~  270 (293)
T d1jksa_         241 SNTS------ALAKDFIRRLLVKDPKKRMTIQDSLQ  270 (293)
T ss_dssp             TTSC------HHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CCCC------HHHHHHHHHHccCChhHCcCHHHHhc
Confidence            1122      24567888999999999999999875

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=6.5e-43  Score=386.78  Aligned_cols=243  Identities=20%  Similarity=0.292  Sum_probs=195.4

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccC
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      ++.+..+|+|+||.||+|+...+|..||||++........+.+.+|+..+.+ ++|||||++++++.+++..|+|||||+
T Consensus        31 Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~-l~HpnIv~~~~~~~~~~~~~ivmE~~~  109 (352)
T d1koba_          31 YDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQ-LHHPKLINLHDAFEDKYEMVLILEFLS  109 (352)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTT-CCSTTBCCEEEEEECSSEEEEEEECCC
T ss_pred             eEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHh-CCCCCCCcEEEEEEECCEEEEEEEcCC
Confidence            4555678999999999999988999999999876544445567788887777 799999999999999999999999999


Q ss_pred             CCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-----
Q 002105          765 GKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----  835 (966)
Q Consensus       765 ~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-----  835 (966)
                      ||+|.+++.    .+++.+...++.||+.||+|||   +.+||||||||+|||++......++++|||++.....     
T Consensus       110 gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH---~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~~  186 (352)
T d1koba_         110 GGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVK  186 (352)
T ss_dssp             CCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEE
T ss_pred             CChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccccccccccccCCCeEEEeecccceecCCCCcee
Confidence            999998874    3899999999999999999999   4599999999999999876667899999999876432     


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...||+.|||||++.+..|+.++||||+||++|||+||+.||.+.. ..+.. ..+...  ...    ..+......+  
T Consensus       187 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~-~~~~~-~~i~~~--~~~----~~~~~~~~~s--  256 (352)
T d1koba_         187 VTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGED-DLETL-QNVKRC--DWE----FDEDAFSSVS--  256 (352)
T ss_dssp             EECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS-HHHHH-HHHHHC--CCC----CCSSTTTTSC--
T ss_pred             eccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCC-HHHHH-HHHHhC--CCC----CCcccccCCC--
Confidence            2368999999999999999999999999999999999999997542 11111 111110  000    1111111122  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       +   ++.+++.+|++.||++|||++|+++
T Consensus       257 -~---~~~~li~~~L~~dp~~R~s~~eil~  282 (352)
T d1koba_         257 -P---EAKDFIKNLLQKEPRKRLTVHDALE  282 (352)
T ss_dssp             -H---HHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             -H---HHHHHHHHHccCChhHCcCHHHHhc
Confidence             2   4567888999999999999999975

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-42  Score=378.32  Aligned_cols=243  Identities=19%  Similarity=0.278  Sum_probs=189.5

Q ss_pred             ccCCCCCccEEEEEEEecCCc--EEEEEEEecc-CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          689 TSRGKKGVSSSYKVRSLANDM--QFVVKKIIDV-NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~--~vavk~~~~~-~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      ..+|+|+||.||+|+...+|.  .||||++... .....++|.+|+..+.++.+|||||+++|+|.+++..|+||||+++
T Consensus        16 ~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV~ey~~~   95 (309)
T d1fvra_          16 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   95 (309)
T ss_dssp             EEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred             EEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEEEEecCC
Confidence            457999999999999977776  4778887543 3334567899999998844899999999999999999999999999


Q ss_pred             CCHHHHHH-------------------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEec
Q 002105          766 KELSEVLR-------------------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSV  826 (966)
Q Consensus       766 g~L~~~l~-------------------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~  826 (966)
                      |+|.++|+                   .++|..+.+++.|||+||+|+|   +.+||||||||+|||++.+.  .+|++|
T Consensus        96 g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH---~~~iiHrDlkp~NIL~~~~~--~~kl~D  170 (309)
T d1fvra_          96 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENY--VAKIAD  170 (309)
T ss_dssp             CBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGG--CEEECC
T ss_pred             CcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhh---cCCccccccccceEEEcCCC--ceEEcc
Confidence            99999985                   3799999999999999999999   55999999999999999654  578999


Q ss_pred             cccceec-----CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCC-CCCCCCCchhhHHHHHHHhhccCcc
Q 002105          827 PGLAYCT-----DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKS-PADADFGVHESIVEWARYCYSDCHL  900 (966)
Q Consensus       827 ~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~-p~~~~~~~~~~~~~~~~~~~~~~~~  900 (966)
                      ||++...     .....||+.|+|||.+.+..|+.++|||||||++|||+||.. ||.+. . ...+.+.+   ..+.  
T Consensus       171 fG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~-~-~~~~~~~i---~~~~--  243 (309)
T d1fvra_         171 FGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM-T-CAELYEKL---PQGY--  243 (309)
T ss_dssp             TTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC-C-HHHHHHHG---GGTC--
T ss_pred             ccccccccccccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCC-C-HHHHHHHH---HhcC--
Confidence            9998542     223468899999999999999999999999999999999765 55432 1 22222222   1111  


Q ss_pred             cccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          901 DTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       901 ~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                          .+......+      .++.+++.+||+.||++||||+||++.|+++++.
T Consensus       244 ----~~~~~~~~~------~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~~  286 (309)
T d1fvra_         244 ----RLEKPLNCD------DEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE  286 (309)
T ss_dssp             ----CCCCCTTBC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             ----CCCCCccCC------HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence                111111222      2566788899999999999999999999996654

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9e-43  Score=379.21  Aligned_cols=241  Identities=21%  Similarity=0.354  Sum_probs=191.3

Q ss_pred             cccccCCCCCccEEEEEEEe-----cCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSL-----ANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLV  759 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~-----~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv  759 (966)
                      +.+..+|+||||.||+|+..     .++..||||++..... ...++|.+|+..+.+ ++|||||+++++|..++..++|
T Consensus        16 ~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~-l~h~niv~~~~~~~~~~~~~~v   94 (301)
T d1lufa_          16 EYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAE-FDNPNIVKLLGVCAVGKPMCLL   94 (301)
T ss_dssp             EEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHT-CCCTTBCCEEEEECSSSSCEEE
T ss_pred             EEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHh-cCCCCcccceeeeccCCceEEE
Confidence            45566899999999999974     2457899998864332 234568999988888 6999999999999999999999


Q ss_pred             EEccCCCCHHHHHHc---------------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcE
Q 002105          760 YEYIEGKELSEVLRN---------------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKV  812 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~~---------------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Ni  812 (966)
                      |||+++|+|.++++.                           ++|..+..|+.|+|.||+|||   +.+||||||||+||
T Consensus        95 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH---~~~ivHrDlKp~NI  171 (301)
T d1lufa_          95 FEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLATRNC  171 (301)
T ss_dssp             EECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGE
T ss_pred             EEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcc---cCCeEeeEEcccce
Confidence            999999999999852                           789999999999999999999   55899999999999


Q ss_pred             EEcCCCCceEEEeccccceec--------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCC-CCCCCCCc
Q 002105          813 IVDGKDEPHLRLSVPGLAYCT--------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKS-PADADFGV  883 (966)
Q Consensus       813 ll~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~-p~~~~~~~  883 (966)
                      |+|.++  .+|++|||++...        .+...+|+.|||||.+.+..||.|+|||||||++|||+||.. ||... ..
T Consensus       172 Lld~~~--~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~-~~  248 (301)
T d1lufa_         172 LVGENM--VVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM-AH  248 (301)
T ss_dssp             EECGGG--CEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS-CH
T ss_pred             EECCCC--cEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCC-CH
Confidence            999754  5799999997532        123467889999999999999999999999999999999964 55432 22


Q ss_pred             hhhHHHHHHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          884 HESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       884 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      .+ +...+.   . ...     |.+....+      .++.+++.+||+.||++||||.||+++|++
T Consensus       249 ~e-~~~~v~---~-~~~-----~~~p~~~~------~~~~~li~~cl~~~P~~RPt~~ev~~~L~~  298 (301)
T d1lufa_         249 EE-VIYYVR---D-GNI-----LACPENCP------LELYNLMRLCWSKLPADRPSFCSIHRILQR  298 (301)
T ss_dssp             HH-HHHHHH---T-TCC-----CCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             HH-HHHHHH---c-CCC-----CCCCccch------HHHHHHHHHHcCCChhHCcCHHHHHHHHHH
Confidence            22 222222   1 111     11111222      256778899999999999999999999998

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-42  Score=377.19  Aligned_cols=241  Identities=22%  Similarity=0.381  Sum_probs=187.6

Q ss_pred             cCCCCCccEEEEEEEecCC---cEEEEEEEecc-CcccccchHHHHHHHHhhcCCCceeEEeeEEec-CCeeEEEEEccC
Q 002105          690 SRGKKGVSSSYKVRSLAND---MQFVVKKIIDV-NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS-EKAAYLVYEYIE  764 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~---~~vavk~~~~~-~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~-~~~~~lv~Ey~~  764 (966)
                      .+|+|+||.||+|+...++   ..||||++... .....++|.+|+..+.+ ++|||||+++|+|.+ ++..++|||||+
T Consensus        34 ~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~-l~HpnIv~~~g~~~~~~~~~~lv~E~~~  112 (311)
T d1r0pa_          34 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD-FSHPNVLSLLGICLRSEGSPLVVLPYMK  112 (311)
T ss_dssp             EEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHT-CCCTTBCCCCEEEEETTTEEEEEEECCT
T ss_pred             EEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHh-CCCCCEeEEeEEEEecCCceEEEEEEee
Confidence            3699999999999985543   36899998643 33334678999998888 699999999999875 568999999999


Q ss_pred             CCCHHHHHHc----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          765 GKELSEVLRN----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       765 ~g~L~~~l~~----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      +|+|.++++.    .+|..+.+++.|+|+||.|+|   +++|+||||||+|||+|++.  .++++|||++....      
T Consensus       113 ~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH---~~~iiHrDLK~~NILl~~~~--~~kL~DFG~~~~~~~~~~~~  187 (311)
T d1r0pa_         113 HGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKF--TVKVADFGLARDMYDKEFDS  187 (311)
T ss_dssp             TCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTC--CEEECSSGGGCCTTTTTCCC
T ss_pred             cCchhhhhccccccchHHHHHHHHHHHHHhhhhhc---ccCcccCCccHHhEeECCCC--CEEEecccchhhcccccccc
Confidence            9999999873    678899999999999999999   56899999999999999765  46889999986421      


Q ss_pred             ----CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          835 ----SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       835 ----~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                          ....||+.|+|||.+.+..++.|+|||||||++|||+||+.|+.......+.. .++   ..+...   ..|   .
T Consensus       188 ~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~-~~i---~~g~~~---~~p---~  257 (311)
T d1r0pa_         188 VHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDIT-VYL---LQGRRL---LQP---E  257 (311)
T ss_dssp             TTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------CH-HHH---HTTCCC---CCC---T
T ss_pred             ceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHH-HHH---HcCCCC---CCc---c
Confidence                12357889999999999999999999999999999999888876543222211 222   121111   111   1


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      ..+      .++.+++.+||+.||++||+|.||++.|+++..
T Consensus       258 ~~~------~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~  293 (311)
T d1r0pa_         258 YCP------DPLYEVMLKCWHPKAEMRPSFSELVSRISAIFS  293 (311)
T ss_dssp             TCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cCc------HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            222      256678899999999999999999999999544

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-42  Score=375.22  Aligned_cols=249  Identities=20%  Similarity=0.280  Sum_probs=184.6

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHH--HHHHHhhcCCCceeEEeeEEecCC----eeEEEEEcc
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPD--VSQFGKLIMHPNIVRLHGVCRSEK----AAYLVYEYI  763 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e--~~~~~~~~~H~niv~l~g~~~~~~----~~~lv~Ey~  763 (966)
                      .+|+||||.||+|+.  +|..||||++....   .+++..|  +..+.+ ++|||||+++|+|.+++    .+|+|||||
T Consensus        10 ~iG~G~fg~Vy~~~~--~g~~vAvK~~~~~~---~~~~~~e~ei~~~~~-~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~   83 (303)
T d1vjya_          10 SIGKGRFGEVWRGKW--RGEEVAVKIFSSRE---ERSWFREAEIYQTVM-LRHENILGFIAADNKDNGTWTQLWLVSDYH   83 (303)
T ss_dssp             EEECCSSSEEEEEEE--TTEEEEEEEECGGG---HHHHHHHHHHHTSTT-CCCTTBCCEEEEEEEECSSSEEEEEEEECC
T ss_pred             EEeeCCCeEEEEEEE--CCEEEEEEEECccc---hhHHHHHHHHHHHhh-CCCCcCcceEEEEEeCCCcceEEEEEEecc
Confidence            468999999999985  78899999885332   2233333  333444 69999999999998654    589999999


Q ss_pred             CCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhc-----CCCCeEeecCCCCcEEEcCCCCceEEEeccccceec---
Q 002105          764 EGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFH-----CSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT---  833 (966)
Q Consensus       764 ~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~-----~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~---  833 (966)
                      ++|+|.++++  .++|..+.+++.|+|.||+|+|+.     ..++||||||||+|||+|.++  .+|++|||++...   
T Consensus        84 ~~g~L~~~l~~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~--~~Kl~DFGl~~~~~~~  161 (303)
T d1vjya_          84 EHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNG--TCCIADLGLAVRHDSA  161 (303)
T ss_dssp             TTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTS--CEEECCCTTCEEEETT
T ss_pred             cCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCC--CeEEEecCccccccCC
Confidence            9999999998  589999999999999999999963     257999999999999999765  5789999987542   


Q ss_pred             -------CCCCcCCcccccccccCCCC------CCCcchHHHHHHHHHHHHcCCCCCCCCCCc----------hhhHHHH
Q 002105          834 -------DSKSINSSAYVAPETKESKD------ITEKGDIYGFGLILIDLLTGKSPADADFGV----------HESIVEW  890 (966)
Q Consensus       834 -------~~~~~~~~~y~aPE~~~~~~------~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~----------~~~~~~~  890 (966)
                             .....||+.|||||++.+..      ++.|+|||||||++|||+||..|+......          .... +.
T Consensus       162 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~-~~  240 (303)
T d1vjya_         162 TDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSV-EE  240 (303)
T ss_dssp             TTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCH-HH
T ss_pred             CcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchH-HH
Confidence                   12346899999999987542      677999999999999999999886432110          0011 12


Q ss_pred             HHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          891 ARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       891 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      .+.......    .+|.+..... ..+...++.+++.+||+.||++||||.||+++|+++.+
T Consensus       241 ~~~~~~~~~----~~p~~~~~~~-~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~  297 (303)
T d1vjya_         241 MRKVVCEQK----LRPNIPNRWQ-SCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ  297 (303)
T ss_dssp             HHHHHTTSC----CCCCCCGGGG-GCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhccc----cCCCCCcccC-ChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHH
Confidence            222111111    2222221111 12345568889999999999999999999999998443

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-42  Score=375.17  Aligned_cols=246  Identities=19%  Similarity=0.279  Sum_probs=184.6

Q ss_pred             cccccCCCCCccEEEEEEEec-----CCcEEEEEEEeccC-cccccchHHHHHHHHhhcCCCceeEEeeEEecC-CeeEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLA-----NDMQFVVKKIIDVN-TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE-KAAYL  758 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~-----~~~~vavk~~~~~~-~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~-~~~~l  758 (966)
                      .....+|+|+||.||+|+...     +++.||||++.... ....+.+..|+..+.++.+|||||++++++.++ +..++
T Consensus        16 ~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~~i   95 (299)
T d1ywna1          16 KLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMV   95 (299)
T ss_dssp             EEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEE
T ss_pred             EEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCCeEEE
Confidence            344567999999999999754     34689999886432 233456888888888877899999999998765 46899


Q ss_pred             EEEccCCCCHHHHHHc-------------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC
Q 002105          759 VYEYIEGKELSEVLRN-------------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE  819 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~~-------------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~  819 (966)
                      |||||++|+|.++++.                   ++|.++..++.|||+||+|||   +.+||||||||+|||++++. 
T Consensus        96 v~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH---~~~ivHrDlKp~NILl~~~~-  171 (299)
T d1ywna1          96 IVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKN-  171 (299)
T ss_dssp             EEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGG-
T ss_pred             EEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHH---hCCCcCCcCCccceeECCCC-
Confidence            9999999999999852                   789999999999999999999   45899999999999998654 


Q ss_pred             ceEEEeccccceec--------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCC-CCCCCCCCchhhHHHH
Q 002105          820 PHLRLSVPGLAYCT--------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGK-SPADADFGVHESIVEW  890 (966)
Q Consensus       820 ~~~~~~~~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~-~p~~~~~~~~~~~~~~  890 (966)
                       .+|++|||++...        .....||+.|||||++.+..++.++|||||||++|||+||. +||.+... .+.+...
T Consensus       172 -~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~-~~~~~~~  249 (299)
T d1ywna1         172 -VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI-DEEFCRR  249 (299)
T ss_dssp             -CEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCC-SHHHHHH
T ss_pred             -cEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCH-HHHHHHH
Confidence             5799999998542        12346899999999999999999999999999999999975 56654322 2222222


Q ss_pred             HHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          891 ARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       891 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      +..   +.      .+.+....+      .++.+++.+||+.||++||||+||++.|+++++
T Consensus       250 ~~~---~~------~~~~~~~~~------~~l~~li~~cl~~dP~~Rpt~~eil~~L~~ilq  296 (299)
T d1ywna1         250 LKE---GT------RMRAPDYTT------PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  296 (299)
T ss_dssp             HHH---TC------CCCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             Hhc---CC------CCCCCccCC------HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence            221   11      111111222      256778899999999999999999999998554

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-42  Score=377.02  Aligned_cols=237  Identities=21%  Similarity=0.298  Sum_probs=185.7

Q ss_pred             CCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEec----CCeeEEEEEccCCC
Q 002105          691 RGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS----EKAAYLVYEYIEGK  766 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~----~~~~~lv~Ey~~~g  766 (966)
                      +|+|+||.||+|++..+++.||||++..     ...+.+|+..+.+..+|||||+++++|.+    ++.+|+|||||+||
T Consensus        20 lG~G~fg~Vy~a~~~~~~~~vAiK~i~~-----~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ivmEy~~gg   94 (335)
T d2ozaa1          20 LGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGG   94 (335)
T ss_dssp             EEECSSCEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSE
T ss_pred             eeeccCeEEEEEEECCCCCEEEEEEECC-----cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEEEECCCCC
Confidence            7999999999999989999999999853     24567788877776789999999999865    46789999999999


Q ss_pred             CHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCC-CceEEEeccccceecC-----C
Q 002105          767 ELSEVLRN-----LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKD-EPHLRLSVPGLAYCTD-----S  835 (966)
Q Consensus       767 ~L~~~l~~-----l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~-~~~~~~~~~~~~~~~~-----~  835 (966)
                      +|.++++.     +++.+...++.||+.||+|||   +.+|+||||||+|||++.+. ...+|++|||++....     .
T Consensus        95 ~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH---~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~~~  171 (335)
T d2ozaa1          95 ELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLT  171 (335)
T ss_dssp             EHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCCCC
T ss_pred             cHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHH---HcCCccccccccccccccccccccccccccceeeeccCCCccc
Confidence            99999963     789999999999999999999   55999999999999998644 4578999999986532     3


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...||+.|||||++.+..|+.++||||+||++|||+||+.||.+.... ... ............ .+..+       ..
T Consensus       172 ~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~-~~~-~~~~~~i~~~~~-~~~~~-------~~  241 (335)
T d2ozaa1         172 TPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL-AIS-PGMKTRIRMGQY-EFPNP-------EW  241 (335)
T ss_dssp             CCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC----------CCCSCSS-SCCTT-------HH
T ss_pred             cccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHH-HHH-HHHHHHHhcCCC-CCCCc-------cc
Confidence            457999999999999999999999999999999999999999754221 111 111110100000 00000       00


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .....++.+++.+|++.||++|||+.|+++
T Consensus       242 ~~~s~~~~~li~~~L~~dP~~R~s~~eil~  271 (335)
T d2ozaa1         242 SEVSEEVKMLIRNLLKTEPTQRMTITEFMN  271 (335)
T ss_dssp             HHSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             ccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            111235677889999999999999999976

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-42  Score=372.33  Aligned_cols=244  Identities=20%  Similarity=0.305  Sum_probs=188.3

Q ss_pred             ccccCCCCCccEEEEEEEecCC-------cEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLAND-------MQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL  758 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~-------~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~l  758 (966)
                      ....+|+||||.||+|+....+       ..||||++..... ....++.+|+..+.++.+|||||+++|+|.+++..++
T Consensus        17 l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~~~~~   96 (299)
T d1fgka_          17 LGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYV   96 (299)
T ss_dssp             EEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             EeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCCeEEE
Confidence            3456799999999999976544       4789998854322 3345688888888886689999999999999999999


Q ss_pred             EEEccCCCCHHHHHH-------------------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC
Q 002105          759 VYEYIEGKELSEVLR-------------------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE  819 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~-------------------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~  819 (966)
                      |||||++|+|.++++                   .++|.++.+++.|||.||+|||   +.+||||||||+|||++.++.
T Consensus        97 v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH---~~~ivHrDiKp~NiLl~~~~~  173 (299)
T d1fgka_          97 IVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNV  173 (299)
T ss_dssp             EECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCC
T ss_pred             EEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhh---hCCEEeeeecccceeecCCCC
Confidence            999999999999994                   3799999999999999999999   558999999999999997654


Q ss_pred             ceEEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHH
Q 002105          820 PHLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEW  890 (966)
Q Consensus       820 ~~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~  890 (966)
                        +|++|||++....        ....+|+.|||||.+.++.|+.|+|||||||++|||+| |++||....  ...+.++
T Consensus       174 --~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~--~~~~~~~  249 (299)
T d1fgka_         174 --MKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP--VEELFKL  249 (299)
T ss_dssp             --EEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--HHHHHHH
T ss_pred             --eEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCC--HHHHHHH
Confidence              6889999876421        22467889999999999999999999999999999998 687876431  2222232


Q ss_pred             HHHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          891 ARYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       891 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      +..   +.      .+......+      .++.+++.+||+.||++||||+||+++|++++.
T Consensus       250 i~~---~~------~~~~p~~~~------~~l~~li~~cl~~dP~~Rps~~eil~~L~~i~a  296 (299)
T d1fgka_         250 LKE---GH------RMDKPSNCT------NELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVA  296 (299)
T ss_dssp             HHT---TC------CCCCCSSCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHc---CC------CCCCCccch------HHHHHHHHHHccCCHhHCcCHHHHHHHHHHHhh
Confidence            221   11      111112222      256778899999999999999999999998654

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-42  Score=374.34  Aligned_cols=245  Identities=19%  Similarity=0.275  Sum_probs=193.2

Q ss_pred             cccCCCCCccEEEEEEEe-----cCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          688 LTSRGKKGVSSSYKVRSL-----ANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       688 ~~~~g~~g~~~vy~~~~~-----~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ...+|+|+||.||+|+..     .+++.||||++..... ....+|.+|+..+.++.+|||||+++|+|.+++..++|||
T Consensus        28 ~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~~lvmE  107 (311)
T d1t46a_          28 GKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITE  107 (311)
T ss_dssp             EEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             eeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCEEEEEEE
Confidence            445799999999999863     3557899999865432 3344688899888885579999999999999999999999


Q ss_pred             ccCCCCHHHHHH---------------------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCc
Q 002105          762 YIEGKELSEVLR---------------------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEP  820 (966)
Q Consensus       762 y~~~g~L~~~l~---------------------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~  820 (966)
                      ||++|+|.++++                     .++|..+.+++.|||+||+|||   +.+||||||||+||+++.+  .
T Consensus       108 ~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH---~~~ivHrDLKp~NIl~~~~--~  182 (311)
T d1t46a_         108 YCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHG--R  182 (311)
T ss_dssp             CCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEETT--T
T ss_pred             cCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccccccccccccc--C
Confidence            999999999986                     2789999999999999999999   5589999999999999865  4


Q ss_pred             eEEEeccccceecC--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcC-CCCCCCCCCchhhHHHHH
Q 002105          821 HLRLSVPGLAYCTD--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTG-KSPADADFGVHESIVEWA  891 (966)
Q Consensus       821 ~~~~~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg-~~p~~~~~~~~~~~~~~~  891 (966)
                      .++++|||.+....        ....||+.|||||++.+..++.++|||||||++|||+|+ ++|+... ...+.+.+.+
T Consensus       183 ~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~-~~~~~~~~~i  261 (311)
T d1t46a_         183 ITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM-PVDSKFYKMI  261 (311)
T ss_dssp             EEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC-CSSHHHHHHH
T ss_pred             cccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCC-CHHHHHHHHH
Confidence            57899999886422        234678999999999999999999999999999999995 5545433 2233332333


Q ss_pred             HHhhccCcccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhcc
Q 002105          892 RYCYSDCHLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRI  953 (966)
Q Consensus       892 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~  953 (966)
                      ....         .+......+      .++.+++.+||+.||++||||+||+++|++.+..
T Consensus       262 ~~~~---------~~~~~~~~~------~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~i~~  308 (311)
T d1t46a_         262 KEGF---------RMLSPEHAP------AEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE  308 (311)
T ss_dssp             HHTC---------CCCCCTTSC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             hcCC---------CCCCccccc------HHHHHHHHHHcCCChhHCcCHHHHHHHHHHhhcc
Confidence            2211         111111222      2567788999999999999999999999986554

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.9e-42  Score=368.39  Aligned_cols=244  Identities=21%  Similarity=0.340  Sum_probs=184.5

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc---cccchHHHHHHHHhhcCCCceeEEeeEEecCC----eeEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI---TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK----AAYL  758 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~---~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~----~~~l  758 (966)
                      .....+|+|+||.||+|++..+|+.||||++......   ..+.|.+|+..+.+ ++|||||++++++..++    ..|+
T Consensus        10 ~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~-~~hpniv~~~~~~~~~~~~~~~~~l   88 (277)
T d1o6ya_          10 ELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAA-LNHPAIVAVYDTGEAETPAGPLPYI   88 (277)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHT-CCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             EEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHh-cCCCCCCcccceeeeccCCCceEEE
Confidence            3445679999999999999899999999998643222   23357888888877 79999999999997654    4899


Q ss_pred             EEEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec--
Q 002105          759 VYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT--  833 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~--  833 (966)
                      |||||+||+|.+++.   .++|.+...++.||+.||+|||   +.+||||||||+|||++.+..  .++.+||.+...  
T Consensus        89 vmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH---~~~iiHrDiKP~NIll~~~~~--~~l~d~~~~~~~~~  163 (277)
T d1o6ya_          89 VMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNA--VKVMDFGIARAIAD  163 (277)
T ss_dssp             EEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTSC--EEECCCTTCEECC-
T ss_pred             EEECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHHHH---hCCccCccccCcccccCcccc--ceeehhhhhhhhcc
Confidence            999999999999886   4899999999999999999999   559999999999999987654  567777765431  


Q ss_pred             -------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccc
Q 002105          834 -------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDP  906 (966)
Q Consensus       834 -------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  906 (966)
                             ....+||+.|||||++.+..|+.++|||||||++|||+||+.||.+... .+.....    ......   ...
T Consensus       164 ~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~-~~~~~~~----~~~~~~---~~~  235 (277)
T d1o6ya_         164 SGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSP-VSVAYQH----VREDPI---PPS  235 (277)
T ss_dssp             ---------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHH----HHCCCC---CGG
T ss_pred             ccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCH-HHHHHHH----HhcCCC---CCc
Confidence                   2234689999999999999999999999999999999999999975421 1211111    111110   000


Q ss_pred             cccCCCcchHHHHHHHHHHHHHccCCCCCCCC-CHHHHHHHHHH
Q 002105          907 FIRGHVSSIQNEIVEIMNLALHCTAGDPTARP-CASDVTKTLES  949 (966)
Q Consensus       907 ~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RP-t~~~v~~~L~~  949 (966)
                      ......+   +   ++.+++.+|++.||++|| |++++...|.+
T Consensus       236 ~~~~~~s---~---~l~~li~~~L~~dp~~R~~sa~~l~~~l~r  273 (277)
T d1o6ya_         236 ARHEGLS---A---DLDAVVLKALAKNPENRYQTAAEMRADLVR  273 (277)
T ss_dssp             GTSSSCC---H---HHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred             hhccCCC---H---HHHHHHHHHccCCHhHCHhHHHHHHHHHHH
Confidence            0111122   2   456677899999999999 89999999987

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-42  Score=375.96  Aligned_cols=246  Identities=17%  Similarity=0.263  Sum_probs=188.9

Q ss_pred             ccccccccCCCCCccEEEEEEEecCCc----EEEEEEEecc-CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeE
Q 002105          683 TTEENLTSRGKKGVSSSYKVRSLANDM----QFVVKKIIDV-NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAY  757 (966)
Q Consensus       683 ~~~~~~~~~g~~g~~~vy~~~~~~~~~----~vavk~~~~~-~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~  757 (966)
                      ++++.+..+|+|+||.||+|+...+|+    .||+|++... .....++|.+|+..+.+ ++|||||+++|+|.++ ..+
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~HpnIv~l~g~~~~~-~~~   86 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMAS-VDNPHVCRLLGICLTS-TVQ   86 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHH-CCCTTBCCEEEEEESS-SEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHh-CCCCCEeeEEEEEecC-Cee
Confidence            345566778999999999999877775    5788887543 23344568899988888 6999999999999875 567


Q ss_pred             EEEEccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec
Q 002105          758 LVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT  833 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~  833 (966)
                      +||||+.+|+|.+++.    .++|..+.+++.|||+||+|||.   .+||||||||+|||++.+.  .+|++|||++...
T Consensus        87 ~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~---~~iiHrDlKp~NIll~~~~--~~kl~DFGla~~~  161 (317)
T d1xkka_          87 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQ--HVKITDFGLAKLL  161 (317)
T ss_dssp             EEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETT--EEEECCCSHHHHT
T ss_pred             EEEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHH---cCcccCcchhhcceeCCCC--CeEeeccccceec
Confidence            8899999999998875    38999999999999999999994   5899999999999999654  6789999998642


Q ss_pred             C--------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccc
Q 002105          834 D--------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWV  904 (966)
Q Consensus       834 ~--------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  904 (966)
                      .        ....||+.|||||++.++.|+.++|||||||++|||+| |+.||++..  ...+.+.+..   +..     
T Consensus       162 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~--~~~~~~~i~~---~~~-----  231 (317)
T d1xkka_         162 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP--ASEISSILEK---GER-----  231 (317)
T ss_dssp             TTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC--GGGHHHHHHH---TCC-----
T ss_pred             ccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHc---CCC-----
Confidence            1        22357899999999999999999999999999999999 788886532  2222222221   111     


Q ss_pred             cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          905 DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       905 d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                       +......+      .++.+++.+||+.||++||||+||++.|+.+.+
T Consensus       232 -~~~p~~~~------~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~~  272 (317)
T d1xkka_         232 -LPQPPICT------IDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  272 (317)
T ss_dssp             -CCCCTTBC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -CCCCcccC------HHHHHHHHHhCCCChhhCcCHHHHHHHHHHHHh
Confidence             11111222      356778899999999999999999999988544

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-41  Score=368.83  Aligned_cols=237  Identities=20%  Similarity=0.328  Sum_probs=188.9

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ++.+..+|+|+||.||+|+...+|+.||||++....   ....+.+.+|+..+.+ ++|||||++++++.+++..|+|||
T Consensus         6 y~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~-l~HpnIv~~~~~~~~~~~~~ivmE   84 (316)
T d1fota_           6 FQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSI-VTHPFIIRMWGTFQDAQQIFMIMD   84 (316)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHS-CCBTTBCCEEEEEECSSEEEEEEC
T ss_pred             eEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHh-ccCcChhheeeeEeeCCeeeeEee
Confidence            344566799999999999998899999999986431   2223456777777766 799999999999999999999999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec---CC
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT---DS  835 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~---~~  835 (966)
                      ||+||+|..++.   .+++.....++.||+.||+|||   +.+||||||||+|||++.++  .+|++|||++...   ..
T Consensus        85 ~~~gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~iiHrDiKp~NILl~~~g--~vkL~DFG~a~~~~~~~~  159 (316)
T d1fota_          85 YIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNG--HIKITDFGFAKYVPDVTY  159 (316)
T ss_dssp             CCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTS--CEEECCCSSCEECSSCBC
T ss_pred             ecCCccccccccccccccccHHHHHHHHHHHhhhhhc---cCcEEccccCchheeEcCCC--CEEEecCccceEeccccc
Confidence            999999999886   3788888999999999999999   66999999999999999654  5899999998753   23


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ..+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.. ..+.. ..+   ... .      +.+....+  
T Consensus       160 ~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~-~~~~~-~~i---~~~-~------~~~p~~~s--  225 (316)
T d1fota_         160 TLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSN-TMKTY-EKI---LNA-E------LRFPPFFN--  225 (316)
T ss_dssp             CCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS-HHHHH-HHH---HHC-C------CCCCTTSC--
T ss_pred             cccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcC-HHHHH-HHH---HcC-C------CCCCCCCC--
Confidence            4679999999999999999999999999999999999999997542 11111 111   111 0      11111122  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARP-----CASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RP-----t~~~v~~  945 (966)
                       +   ++.+++.+|++.||.+||     |++|+++
T Consensus       226 -~---~~~~li~~~L~~dp~~R~~~~r~t~~~il~  256 (316)
T d1fota_         226 -E---DVKDLLSRLITRDLSQRLGNLQNGTEDVKN  256 (316)
T ss_dssp             -H---HHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             -H---HHHHHHHHHhhhCHHhccccchhhHHHHHc
Confidence             2   456777899999999996     8888863

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-42  Score=365.42  Aligned_cols=242  Identities=19%  Similarity=0.251  Sum_probs=181.8

Q ss_pred             ccccccCCCCCccEEEEEEEecC-C--cEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLAN-D--MQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYL  758 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~-~--~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~l  758 (966)
                      .+.+..+|+||||.||+|+...+ +  ..||||++....   ....++|.+|+..+.+ ++|||||+++|+|.+ +..++
T Consensus        10 ~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~-l~H~nIv~~~g~~~~-~~~~l   87 (273)
T d1u46a_          10 LRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS-LDHRNLIRLYGVVLT-PPMKM   87 (273)
T ss_dssp             EEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHH-CCCTTBCCEEEEECS-SSCEE
T ss_pred             eEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHh-CCCCCEEEEEEEEee-cchhe
Confidence            44566789999999999986533 2  368999875432   2223568899988888 699999999999976 46789


Q ss_pred             EEEccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          759 VYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      |||||++|++.+++.    .++|..+.+++.|||+||+|||   +.+|+||||||+||+++.+.  .+|++|||++....
T Consensus        88 v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH---~~~iiHrDikp~NIll~~~~--~vkl~DfGl~~~~~  162 (273)
T d1u46a_          88 VTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRD--LVKIGDFGLMRALP  162 (273)
T ss_dssp             EEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETT--EEEECCCTTCEECC
T ss_pred             eeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhh---hCCEeeeeecHHHhcccccc--ceeeccchhhhhcc
Confidence            999999999998874    4999999999999999999999   45899999999999999754  68999999987532


Q ss_pred             ---------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccc
Q 002105          835 ---------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWV  904 (966)
Q Consensus       835 ---------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  904 (966)
                               ....+++.|||||.+.+..++.++|||||||++|||+| |+.||.+. ...+ +..++.   ...     .
T Consensus       163 ~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~-~~~~-~~~~i~---~~~-----~  232 (273)
T d1u46a_         163 QNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL-NGSQ-ILHKID---KEG-----E  232 (273)
T ss_dssp             C-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC-CHHH-HHHHHH---TSC-----C
T ss_pred             cCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCc-CHHH-HHHHHH---hCC-----C
Confidence                     12346789999999999999999999999999999998 89998753 1122 222222   111     1


Q ss_pred             cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHH
Q 002105          905 DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLES  949 (966)
Q Consensus       905 d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~  949 (966)
                      .+......+      .++.+++.+||+.||++||||.||.+.|++
T Consensus       233 ~~~~~~~~~------~~l~~li~~cl~~dp~~RPt~~ei~~~L~~  271 (273)
T d1u46a_         233 RLPRPEDCP------QDIYNVMVQCWAHKPEDRPTFVALRDFLLE  271 (273)
T ss_dssp             CCCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             CCCCccccc------HHHHHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence            111111222      256678899999999999999999999987

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-41  Score=368.63  Aligned_cols=237  Identities=23%  Similarity=0.287  Sum_probs=189.9

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ++.+..+|+|+||.||+|+...+|+.||||++....   ....+.+.+|+..+.+ ++|||||++++++.+++..|+|||
T Consensus         7 y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~-l~hp~Iv~l~~~~~~~~~~~iv~e   85 (337)
T d1o6la_           7 FDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN-TRHPFLTALKYAFQTHDRLCFVME   85 (337)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHS-CCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             cEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHh-CCCCCEEEEEeeecccccccccee
Confidence            445667899999999999999999999999986432   2233457788887777 799999999999999999999999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      ||+||+|.++++   .+++...+.++.||+.||+|||   +.+||||||||+|||+|.++  .+|++|||++....    
T Consensus        86 y~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NILl~~~g--~vkl~DFG~a~~~~~~~~  160 (337)
T d1o6la_          86 YANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDG--HIKITDFGLCKEGISDGA  160 (337)
T ss_dssp             CCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTS--CEEECCCTTCBCSCCTTC
T ss_pred             ccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhh---hcCccccccCHHHeEecCCC--CEEEeecccccccccCCc
Confidence            999999999986   3888899999999999999999   55999999999999999764  68999999986421    


Q ss_pred             --CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 --SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 --~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                        ...+||+.|||||++.+..|+.++||||+||++|||+||+.||.+..  ...+.+....   . .      +.++...
T Consensus       161 ~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~--~~~~~~~i~~---~-~------~~~p~~~  228 (337)
T d1o6la_         161 TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD--HERLFELILM---E-E------IRFPRTL  228 (337)
T ss_dssp             CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHH---C-C------CCCCTTS
T ss_pred             ccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcC--HHHHHHHHhc---C-C------CCCCccC
Confidence              23578999999999999999999999999999999999999997642  2222121111   1 1      1111122


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPC-----ASDVTK  945 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt-----~~~v~~  945 (966)
                      +   +   ++.+++..|++.||++||+     +.|+++
T Consensus       229 s---~---~~~dli~~~L~~dP~~R~~~~~~~~~eil~  260 (337)
T d1o6la_         229 S---P---EAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             C---H---HHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             C---H---HHHHHHHhhccCCchhhcccccccHHHHHc
Confidence            2   2   4567788999999999995     666654

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-41  Score=370.20  Aligned_cols=236  Identities=19%  Similarity=0.310  Sum_probs=189.3

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      +....+|+|+||.||+|+...+|+.||||++....   ....+.+..|+..+.+.++|||||++++++.+++..|+||||
T Consensus         5 ~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yivmEy   84 (320)
T d1xjda_           5 ILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEY   84 (320)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             EEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEEEee
Confidence            33456789999999999998999999999986432   223345677887777668999999999999999999999999


Q ss_pred             cCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec------
Q 002105          763 IEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT------  833 (966)
Q Consensus       763 ~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~------  833 (966)
                      |++|+|.++++   .+++.+...++.||+.||+|||   +.+||||||||+|||+++++  .++++|||++...      
T Consensus        85 ~~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~ylH---~~~iiHrDikp~NiL~~~~~--~~kl~DFG~a~~~~~~~~~  159 (320)
T d1xjda_          85 LNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDG--HIKIADFGMCKENMLGDAK  159 (320)
T ss_dssp             CTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTS--CEEECCCTTCBCCCCTTCC
T ss_pred             cCCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCcccceeecCCC--ceeccccchhhhccccccc
Confidence            99999999996   4889999999999999999999   45899999999999999654  5789999998642      


Q ss_pred             CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCc
Q 002105          834 DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVS  913 (966)
Q Consensus       834 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  913 (966)
                      .....||+.|||||++.+..|+.++||||+||++|||+||+.||.+..  ...+...+..          -.|......+
T Consensus       160 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~--~~~~~~~i~~----------~~~~~p~~~s  227 (320)
T d1xjda_         160 TNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQD--EEELFHSIRM----------DNPFYPRWLE  227 (320)
T ss_dssp             BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHH----------CCCCCCTTSC
T ss_pred             ccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCC--HHHHHHHHHc----------CCCCCCccCC
Confidence            233578999999999999999999999999999999999999997642  2222121111          1111112222


Q ss_pred             chHHHHHHHHHHHHHccCCCCCCCCCHH-HHH
Q 002105          914 SIQNEIVEIMNLALHCTAGDPTARPCAS-DVT  944 (966)
Q Consensus       914 ~~~~~~~~~~~l~~~C~~~~P~~RPt~~-~v~  944 (966)
                         +   ++.+++.+|++.||++|||+. |+.
T Consensus       228 ---~---~~~dli~~~L~~dP~~R~s~~~~l~  253 (320)
T d1xjda_         228 ---K---EAKDLLVKLFVREPEKRLGVRGDIR  253 (320)
T ss_dssp             ---H---HHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             ---H---HHHHHHHHhcccCCCCCcCHHHHHH
Confidence               2   456778899999999999995 674

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-41  Score=370.13  Aligned_cols=241  Identities=19%  Similarity=0.260  Sum_probs=192.2

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEG  765 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~  765 (966)
                      .....+|+|+||.||+|++..+|..||||.+... ......+.+|+..+.+ ++|||||++++++.+++..|+|||||+|
T Consensus         8 ~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~-~~~~~~~~~Ei~il~~-l~HpnIv~~~~~~~~~~~~~lvmE~~~g   85 (321)
T d1tkia_           8 MIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNI-ARHRNILHLHESFESMEELVMIFEFISG   85 (321)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-THHHHHHHHHHHHHHH-SCCTTBCCEEEEEEETTEEEEEECCCCC
T ss_pred             EEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCC-cccHHHHHHHHHHHHh-CCCCCCCeEEEEEEECCEEEEEEecCCC
Confidence            3445679999999999999889999999988543 2233457788877766 7999999999999999999999999999


Q ss_pred             CCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-----C
Q 002105          766 KELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----K  836 (966)
Q Consensus       766 g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-----~  836 (966)
                      |+|.++++    .+++.+...++.||++||+|||   +.+|+||||||+|||++.+....++++|||++.....     .
T Consensus        86 g~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH---~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~~~  162 (321)
T d1tkia_          86 LDIFERINTSAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRL  162 (321)
T ss_dssp             CBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEE
T ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HcCCCcccccccceeecCCCceEEEEcccchhhccccCCcccc
Confidence            99999996    3789999999999999999999   4599999999999999987777899999999875432     2


Q ss_pred             CcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcchH
Q 002105          837 SINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSIQ  916 (966)
Q Consensus       837 ~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  916 (966)
                      ..+|+.|+|||...+..|+.++||||+||++|||+||+.||..... .+.. ..+.   .. .. . .+.......+   
T Consensus       163 ~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~-~~~~-~~i~---~~-~~-~-~~~~~~~~~s---  231 (321)
T d1tkia_         163 LFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN-QQII-ENIM---NA-EY-T-FDEEAFKEIS---  231 (321)
T ss_dssp             EESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH-HHHH-HHHH---HT-CC-C-CCHHHHTTSC---
T ss_pred             cccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCH-HHHH-HHHH---hC-CC-C-CChhhccCCC---
Confidence            3689999999999999999999999999999999999999976421 1111 1111   11 00 0 1111111111   


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          917 NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       917 ~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         .++.+++.+|++.||++|||++|+++
T Consensus       232 ---~~~~~li~~~L~~dp~~R~s~~eil~  257 (321)
T d1tkia_         232 ---IEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             ---HHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             ---HHHHHHHHHHccCChhHCcCHHHHhc
Confidence               24567888999999999999999986

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.2e-41  Score=370.23  Aligned_cols=289  Identities=31%  Similarity=0.530  Sum_probs=233.7

Q ss_pred             CcHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCC--cccceeeCCCC---CEEEEEcCCCCccc--cccccccCCCCCCEE
Q 002105           18 CHGAELELLLSFKSTVNDPYNFLSNWDSSVTFC--KWNGISCQNST---HVNAIELSAKNISG--KISSSIFHLPHVESI   90 (966)
Q Consensus        18 ~~~~~~~~Ll~~k~~~~~~~~~l~~w~~~~~~c--~w~gv~c~~~~---~v~~L~L~~~~l~~--~~~~~~~~l~~L~~L   90 (966)
                      |+++|++||++||+++.||. .+++|..++|||  .|+||+|++.+   ||+.|||++++++|  .+|+++++|++|++|
T Consensus         3 c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L   81 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL   81 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEE
T ss_pred             CCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccccc
Confidence            99999999999999999875 689998778999  49999998754   89999999999998  578999999999999


Q ss_pred             EcCC-CCCccccChhhhhcCCCCcEEECCCCCCCCCCC--CCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCC
Q 002105           91 NLSS-NQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNV  167 (966)
Q Consensus        91 ~Ls~-N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  167 (966)
                      ||++ |+++|.||+++.. +++|++|+|++|++.+..+  +..+.+|+++++++|.+.+.+|..++++++|+++++++|.
T Consensus        82 ~Ls~~N~l~g~iP~~i~~-L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_          82 YIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccccccccccccccccc-ccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccc
Confidence            9996 8999999987654 5889999999888887444  4677788888888888888888888888888888888888


Q ss_pred             CcccCCcCCCCCCCC-CEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCc
Q 002105          168 LVGEIPLSISNITSL-QIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPP  246 (966)
Q Consensus       168 l~~~~p~~~~~l~~L-~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  246 (966)
                      +.+.+|..+..+..+ +.++++.|++++..|..+..+..+ .+++..+...+.+|..+..+++|+.+++++|.+.+.+| 
T Consensus       161 l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-  238 (313)
T d1ogqa_         161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-  238 (313)
T ss_dssp             CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-
T ss_pred             cccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-
Confidence            888888877777765 777888888887777777766544 57777777777777777777778888888777776544 


Q ss_pred             CCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCC
Q 002105          247 SFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNN  311 (966)
Q Consensus       247 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  311 (966)
                      .++.+++|++|+|++|+++|.+|..++++++|++|+|++|+++|.+|. ++.+++|+.+++++|+
T Consensus       239 ~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            567777777777777777777777777777777777777777777763 4566777777777775

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-41  Score=363.48  Aligned_cols=242  Identities=20%  Similarity=0.315  Sum_probs=181.5

Q ss_pred             ccccCCCCCccEEEEEEEecCC---cEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          687 NLTSRGKKGVSSSYKVRSLAND---MQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~---~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      ....+|+|+||.||+|++..++   ..||||++..... ...+.|.+|+..+.+ ++|||||+++|+|. ++..|+||||
T Consensus        11 l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~-l~HpnIv~l~~~~~-~~~~~iv~E~   88 (273)
T d1mp8a_          11 LGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQ-FDHPHIVKLIGVIT-ENPVWIIMEL   88 (273)
T ss_dssp             EEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHT-CCCTTBCCEEEEEC-SSSCEEEEEC
T ss_pred             EEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHh-CCCCCEeeEEEEEe-cCeEEEEEEe
Confidence            3445799999999999875443   4688887754322 223458888888877 79999999999996 4678999999


Q ss_pred             cCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          763 IEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       763 ~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      |++|+|.+++.    .++|..+..++.|||+||+|||   +.+||||||||+||+++.+.  .+|++|||++....    
T Consensus        89 ~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH---~~~iiHrDlKp~NIll~~~~--~~Kl~DfG~a~~~~~~~~  163 (273)
T d1mp8a_          89 CTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSND--CVKLGDFGLSRYMEDSTY  163 (273)
T ss_dssp             CTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETT--EEEECC------------
T ss_pred             ccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhc---ccCeeccccchhheeecCCC--cEEEccchhheeccCCcc
Confidence            99999999875    3899999999999999999999   55899999999999999654  58999999986421    


Q ss_pred             ---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHhhccCcccccccccccC
Q 002105          835 ---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLT-GKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRG  910 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  910 (966)
                         ....||+.|||||++.+..|+.++|||||||++|||+| |++||....  ...+.+.+..   ...      +.+..
T Consensus       164 ~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~--~~~~~~~i~~---~~~------~~~~~  232 (273)
T d1mp8a_         164 YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK--NNDVIGRIEN---GER------LPMPP  232 (273)
T ss_dssp             -------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHHHHHT---TCC------CCCCT
T ss_pred             eeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCC--HHHHHHHHHc---CCC------CCCCC
Confidence               23457899999999999999999999999999999998 898987542  2222222221   111      11112


Q ss_pred             CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          911 HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       911 ~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      ..+      .++.+++.+||+.||++||||+||++.|++++.
T Consensus       233 ~~~------~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~  268 (273)
T d1mp8a_         233 NCP------PTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE  268 (273)
T ss_dssp             TCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCC------HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            222      256678889999999999999999999998543

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-41  Score=369.03  Aligned_cols=243  Identities=16%  Similarity=0.259  Sum_probs=190.1

Q ss_pred             ccccCCCCCccEEEEEEEe-----cCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSL-----ANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~-----~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      ....+|+||||.||+|.+.     .++..||||++..... .....|.+|+..+.+ ++|||||+++|+|..++..++||
T Consensus        24 l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~-l~h~nIv~~~~~~~~~~~~~lv~  102 (308)
T d1p4oa_          24 MSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE-FNCHHVVRLLGVVSQGQPTLVIM  102 (308)
T ss_dssp             EEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGG-CCCTTBCCEEEEECSSSSCEEEE
T ss_pred             EeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHH-cCCCCEeeeeeEEecCCceeEEE
Confidence            3445799999999999874     2357899999864322 223457888888888 69999999999999999999999


Q ss_pred             EccCCCCHHHHHHc-------------CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecc
Q 002105          761 EYIEGKELSEVLRN-------------LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVP  827 (966)
Q Consensus       761 Ey~~~g~L~~~l~~-------------l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~  827 (966)
                      |||++|+|.++++.             ++|..+.+++.|+|+||.|||.   .+||||||||+|||+|++.  .+|++||
T Consensus       103 e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~---~~ivHrDlk~~NiLld~~~--~~Kl~DF  177 (308)
T d1p4oa_         103 ELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDF--TVKIGDF  177 (308)
T ss_dssp             ECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCSGGGEEECTTC--CEEECCT
T ss_pred             eecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhh---CCeeeceEcCCceeecCCc--eEEEeec
Confidence            99999999998852             6899999999999999999994   5899999999999999765  5789999


Q ss_pred             ccceec--------CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCC-CCCCCCCCchhhHHHHHHHhhccC
Q 002105          828 GLAYCT--------DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGK-SPADADFGVHESIVEWARYCYSDC  898 (966)
Q Consensus       828 ~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~-~p~~~~~~~~~~~~~~~~~~~~~~  898 (966)
                      |++...        .....+|+.|||||.+.+..++.++|||||||++|||+||+ .|+.+. ...+    +........
T Consensus       178 Gla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~-~~~~----~~~~i~~~~  252 (308)
T d1p4oa_         178 GMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL-SNEQ----VLRFVMEGG  252 (308)
T ss_dssp             TCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS-CHHH----HHHHHHTTC
T ss_pred             ccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCC-CHHH----HHHHHHhCC
Confidence            998532        23346789999999999999999999999999999999985 555432 2221    222111211


Q ss_pred             cccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          899 HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       899 ~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      ..      .+....+      .++.+++.+||+.+|++||||+||+++|++.+.
T Consensus       253 ~~------~~p~~~~------~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~  294 (308)
T d1p4oa_         253 LL------DKPDNCP------DMLFELMRMCWQYNPKMRPSFLEIISSIKEEME  294 (308)
T ss_dssp             CC------CCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             CC------CCcccch------HHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence            11      1111222      257778899999999999999999999998444

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=3e-40  Score=353.27  Aligned_cols=241  Identities=21%  Similarity=0.287  Sum_probs=187.6

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCccc---------ccchHHHHHHHHhhcCCCceeEEeeEEecCCee
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTIT---------TSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAA  756 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~---------~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~  756 (966)
                      +....+|+|++|.||+|+...+|+.||||++.......         .+.+.+|+..+.++-.|||||++++++.+++..
T Consensus         6 ~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~   85 (277)
T d1phka_           6 EPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFF   85 (277)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             EEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccCcce
Confidence            34556789999999999998899999999986543222         124678888888843499999999999999999


Q ss_pred             EEEEEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec
Q 002105          757 YLVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT  833 (966)
Q Consensus       757 ~lv~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~  833 (966)
                      |||||||++|+|.++++   .+++.+.+.++.||++||+|||   ..+||||||||+|||++.+.  .+|++|||++...
T Consensus        86 ~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nill~~~~--~~kl~DFG~a~~~  160 (277)
T d1phka_          86 FLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDM--NIKLTDFGFSCQL  160 (277)
T ss_dssp             EEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTC--CEEECCCTTCEEC
T ss_pred             EEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HcCCcccccccceEEEcCCC--CeEEccchheeEc
Confidence            99999999999999996   4899999999999999999999   45899999999999998654  5789999998653


Q ss_pred             C-----CCCcCCcccccccccC------CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccc
Q 002105          834 D-----SKSINSSAYVAPETKE------SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDT  902 (966)
Q Consensus       834 ~-----~~~~~~~~y~aPE~~~------~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  902 (966)
                      .     ....||+.|+|||++.      ...++.++||||+||++|||+||+.||.+... .+.. +.+   ... ... 
T Consensus       161 ~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~-~~~~-~~i---~~~-~~~-  233 (277)
T d1phka_         161 DPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ-MLML-RMI---MSG-NYQ-  233 (277)
T ss_dssp             CTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHH-HHH---HHT-CCC-
T ss_pred             cCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCH-HHHH-HHH---HhC-CCC-
Confidence            2     3356899999999874      34578899999999999999999999976421 1111 111   111 110 


Q ss_pred             cccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          903 WVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       903 ~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +..+.. ...+   +   ++.+++.+|++.||++|||++||++
T Consensus       234 ~~~~~~-~~~s---~---~~~~li~~~L~~~p~~R~s~~eil~  269 (277)
T d1phka_         234 FGSPEW-DDYS---D---TVKDLVSRFLVVQPQKRYTAEEALA  269 (277)
T ss_dssp             CCTTTG-GGSC---H---HHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             CCCccc-ccCC---H---HHHHHHHHHccCChhHCcCHHHHHc
Confidence            011111 1122   2   5667888999999999999999864

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-40  Score=368.79  Aligned_cols=239  Identities=21%  Similarity=0.246  Sum_probs=182.2

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHH--HHhhcCCCceeEEeeEEecCCeeEEEE
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQ--FGKLIMHPNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~--~~~~~~H~niv~l~g~~~~~~~~~lv~  760 (966)
                      +....+|+||||.||+|+...+|..||||++....   ......+.+|+..  +.+.++|||||++++++.+++..|+||
T Consensus         7 ~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~ivm   86 (364)
T d1omwa3           7 SVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFIL   86 (364)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEE
T ss_pred             eeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEEEEE
Confidence            34456799999999999998899999999986432   1122234444332  223357999999999999999999999


Q ss_pred             EccCCCCHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---
Q 002105          761 EYIEGKELSEVLRN---LSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       761 Ey~~~g~L~~~l~~---l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---  834 (966)
                      |||+||+|.++++.   +++.....++.||+.||+|||   ..+||||||||+|||++.++  .+|++|||++....   
T Consensus        87 E~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH---~~~iiHrDlKP~NILl~~~g--~iKl~DFGla~~~~~~~  161 (364)
T d1omwa3          87 DLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHG--HVRISDLGLACDFSKKK  161 (364)
T ss_dssp             CCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSSS--CEEECCCTTCEECSSSC
T ss_pred             EecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHH---HCCccceeeccceeEEcCCC--cEEEeeeceeeecCCCc
Confidence            99999999999963   889999999999999999999   55999999999999998654  57899999986532   


Q ss_pred             -CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 -SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                       ....||+.|||||++.. ..|+.++|||||||++|||+||+.||........  .+..+....       ..+.+....
T Consensus       162 ~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~--~~~~~~~~~-------~~~~~~~~~  232 (364)
T d1omwa3         162 PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDK--HEIDRMTLT-------MAVELPDSF  232 (364)
T ss_dssp             CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCH--HHHHHHSSS-------CCCCCCSSS
T ss_pred             ccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHH--HHHHHhccc-------CCCCCCCCC
Confidence             34579999999999864 5689999999999999999999999976432211  111111111       111111122


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCC-----HHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPC-----ASDVT  944 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt-----~~~v~  944 (966)
                      +   +   ++.+++.+|++.||++|||     ++|++
T Consensus       233 s---~---~~~~li~~~L~~dP~~R~t~~~~~a~eil  263 (364)
T d1omwa3         233 S---P---ELRSLLEGLLQRDVNRRLGCLGRGAQEVK  263 (364)
T ss_dssp             C---H---HHHHHHHHHTCSSTTTSTTTSSSTHHHHH
T ss_pred             C---H---HHHHHHHHHcccCHHHhCCCcccCHHHHH
Confidence            2   2   4567788999999999999     46665

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.5e-40  Score=364.81  Aligned_cols=237  Identities=20%  Similarity=0.261  Sum_probs=189.9

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC---cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN---TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~---~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ++.+..+|+|+||.||+|++..+|..||||++....   ....+.+.+|+..+.+ ++|||||++++++...+..++|||
T Consensus        43 y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~-l~hpnIv~~~~~~~~~~~~~~v~e  121 (350)
T d1rdqe_          43 FDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQA-VNFPFLVKLEFSFKDNSNLYMVME  121 (350)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTT-CCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             eEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHH-cCCCcEeecccccccccccccccc
Confidence            345667899999999999998899999999986432   2223456788877766 799999999999999999999999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---C
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---S  835 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---~  835 (966)
                      |+++|+|.+++.   .+++.....++.||+.||+|||   +.+||||||||+|||++.++  .++++|||++....   .
T Consensus       122 ~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH---~~~iiHRDIKP~NILl~~~g--~ikL~DFG~a~~~~~~~~  196 (350)
T d1rdqe_         122 YVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQG--YIQVTDFGFAKRVKGRTW  196 (350)
T ss_dssp             CCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTS--CEEECCCTTCEECSSCBC
T ss_pred             cccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCcCCHHHcccCCCC--CEEeeeceeeeecccccc
Confidence            999999999985   4899999999999999999999   45899999999999998654  68999999987643   3


Q ss_pred             CCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCCcch
Q 002105          836 KSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHVSSI  915 (966)
Q Consensus       836 ~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  915 (966)
                      ...||+.|||||++.+..|+.++|||||||++|||+||+.||.+..  ...+...+.   .. .      +......+  
T Consensus       197 ~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~--~~~~~~~i~---~~-~------~~~p~~~s--  262 (350)
T d1rdqe_         197 TLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ--PIQIYEKIV---SG-K------VRFPSHFS--  262 (350)
T ss_dssp             CCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHH---HC-C------CCCCTTCC--
T ss_pred             cccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcC--HHHHHHHHh---cC-C------CCCCccCC--
Confidence            4578999999999999999999999999999999999999997542  111111111   11 0      11111222  


Q ss_pred             HHHHHHHHHHHHHccCCCCCCCC-----CHHHHHH
Q 002105          916 QNEIVEIMNLALHCTAGDPTARP-----CASDVTK  945 (966)
Q Consensus       916 ~~~~~~~~~l~~~C~~~~P~~RP-----t~~~v~~  945 (966)
                       +   ++.+++.+|++.||.+|+     |++|+++
T Consensus       263 -~---~~~~li~~~L~~dP~kR~~~~r~t~~ell~  293 (350)
T d1rdqe_         263 -S---DLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             -H---HHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             -H---HHHHHHHHHhhhCHHhccccccccHHHHHc
Confidence             2   456778899999999994     8888864

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-40  Score=360.39  Aligned_cols=251  Identities=19%  Similarity=0.236  Sum_probs=184.2

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcc-----cccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEE
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI-----TTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~-----~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      .+..+|+|+||.||+|++..+|+.||||++......     ..+.+.+|+..+.+ ++|||||++++++..++..|+|||
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~-l~hpnIv~~~~~~~~~~~~~ivmE   80 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQE-LSHPNIIGLLDAFGHKSNISLVFD   80 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHH-CCCTTBCCEEEEECCTTCCEEEEE
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHh-CCCCCEeEEEeeeccCCceeehhh
Confidence            345679999999999999889999999988543211     23457788888777 799999999999999999999999


Q ss_pred             ccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          762 YIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       762 y~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      ||++|++..+..   .+++.+...++.||+.||+|||   +.+|+||||||+|||++.+.  .+|++|||.+....    
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDiKp~NIli~~~~--~~KL~DFG~a~~~~~~~~  155 (299)
T d1ua2a_          81 FMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENG--VLKLADFGLAKSFGSPNR  155 (299)
T ss_dssp             CCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTC--CEEECCCGGGSTTTSCCC
T ss_pred             hhcchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhh---ccceecccCCcceEEecCCC--ccccccCccccccCCCcc
Confidence            999988777664   3888999999999999999999   55899999999999999654  57899999985422    


Q ss_pred             --CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccccc----
Q 002105          835 --SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPF----  907 (966)
Q Consensus       835 --~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----  907 (966)
                        ...+||+.|||||++.. ..|+.++|||||||++|||+||+.||.+... .+.+....+. ........+.+..    
T Consensus       156 ~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~-~~~l~~i~~~-~~~~~~~~~~~~~~~~~  233 (299)
T d1ua2a_         156 AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSD-LDQLTRIFET-LGTPTEEQWPDMCSLPD  233 (299)
T ss_dssp             CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHH-HCCCCTTTSSSTTSSTT
T ss_pred             cccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCH-HHHHHHHHHh-cCCCChhhccchhccch
Confidence              23468999999998864 4679999999999999999999999976422 2222111111 1100000000000    


Q ss_pred             ---ccCCCcchHH-----HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          908 ---IRGHVSSIQN-----EIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       908 ---~~~~~~~~~~-----~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                         ..........     .-.++.+++.+|++.||++|||++|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~  279 (299)
T d1ua2a_         234 YVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK  279 (299)
T ss_dssp             CCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             hhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhC
Confidence               0000000000     1135677889999999999999999875

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-40  Score=351.30  Aligned_cols=229  Identities=21%  Similarity=0.302  Sum_probs=182.7

Q ss_pred             ccCCCCCccEEEEEEEecCCcEEEEEEEeccCc------ccccchHHHHHHHHhhc-CCCceeEEeeEEecCCeeEEEEE
Q 002105          689 TSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT------ITTSSFWPDVSQFGKLI-MHPNIVRLHGVCRSEKAAYLVYE  761 (966)
Q Consensus       689 ~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~------~~~~~~~~e~~~~~~~~-~H~niv~l~g~~~~~~~~~lv~E  761 (966)
                      ..+|+|+||.||+|+...+|..||||++.....      .....+.+|+..+.++- .|||||++++++.+++..|+|||
T Consensus        10 ~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~~~lv~e   89 (273)
T d1xwsa_          10 PLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILE   89 (273)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEEEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCeEEEEEE
Confidence            456899999999999989999999999864321      12345778888887742 39999999999999999999999


Q ss_pred             ccCC-CCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC---
Q 002105          762 YIEG-KELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD---  834 (966)
Q Consensus       762 y~~~-g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~---  834 (966)
                      |+++ +++.++++   .+++.+...++.||++||+|||   +.+||||||||+|||++.+ ...++++|||++....   
T Consensus        90 ~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH---~~~iiHrDiKp~NIll~~~-~~~vkl~DFG~a~~~~~~~  165 (273)
T d1xwsa_          90 RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLN-RGELKLIDFGSGALLKDTV  165 (273)
T ss_dssp             CCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETT-TTEEEECCCTTCEECCSSC
T ss_pred             eccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCCccccCcccceEEecC-CCeEEECccccceeccccc
Confidence            9986 68888875   4899999999999999999999   5699999999999999854 3468999999986532   


Q ss_pred             -CCCcCCcccccccccCCCCC-CCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccccccccCCC
Q 002105          835 -SKSINSSAYVAPETKESKDI-TEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVDPFIRGHV  912 (966)
Q Consensus       835 -~~~~~~~~y~aPE~~~~~~~-~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  912 (966)
                       ....||+.|||||++.+..+ +.++||||+||++|||+||+.||...    +.+   .+.           ...++...
T Consensus       166 ~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~----~~i---~~~-----------~~~~~~~~  227 (273)
T d1xwsa_         166 YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD----EEI---IRG-----------QVFFRQRV  227 (273)
T ss_dssp             BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH----HHH---HHC-----------CCCCSSCC
T ss_pred             ccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCc----hHH---hhc-----------ccCCCCCC
Confidence             34579999999999887765 56789999999999999999998642    111   110           01111122


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          913 SSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       913 ~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      +   +   ++.+++.+|++.||++|||++|+++
T Consensus       228 s---~---~~~~li~~~L~~dp~~R~s~~eil~  254 (273)
T d1xwsa_         228 S---S---ECQHLIRWCLALRPSDRPTFEEIQN  254 (273)
T ss_dssp             C---H---HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             C---H---HHHHHHHHHccCCHhHCcCHHHHhc
Confidence            2   2   4566778999999999999999875

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-39  Score=349.71  Aligned_cols=255  Identities=19%  Similarity=0.229  Sum_probs=184.4

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEc
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEY  762 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey  762 (966)
                      +..+..+|+|+||.||+|++..+|+.||||++....  ....+.+.+|+..+.+ ++|||||++++++.+++..|+||||
T Consensus         4 Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~-l~Hp~Iv~~~~~~~~~~~~~iv~e~   82 (298)
T d1gz8a_           4 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE-LNHPNIVKLLDVIHTENKLYLVFEF   82 (298)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTT-CCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             CEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHh-CCCCcEEEeccccccccceeEEEee
Confidence            344567899999999999998999999999985432  2234567888888777 7999999999999999999999999


Q ss_pred             cCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC----
Q 002105          763 IEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD----  834 (966)
Q Consensus       763 ~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~----  834 (966)
                      +.++.+.....    .+++.....++.||+.||+|||   +.+||||||||+|||++.+.  .++++|||.+....    
T Consensus        83 ~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH---~~~IiHrDiKpeNIl~~~~~--~~kl~DFG~a~~~~~~~~  157 (298)
T d1gz8a_          83 LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEG--AIKLADFGLARAFGVPVR  157 (298)
T ss_dssp             CSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTS--CEEECSTTHHHHHCCCSB
T ss_pred             cCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhh---cCCEEccccCchheeecccC--cceeccCCcceeccCCcc
Confidence            98655444332    3899999999999999999999   45899999999999998654  57899999985432    


Q ss_pred             --CCCcCCcccccccccCCCC-CCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhc--cCccccc-----c
Q 002105          835 --SKSINSSAYVAPETKESKD-ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYS--DCHLDTW-----V  904 (966)
Q Consensus       835 --~~~~~~~~y~aPE~~~~~~-~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~  904 (966)
                        ....||+.|+|||...... ++.++||||+||++|||+||+.||.+... .+...........  .......     .
T Consensus       158 ~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~  236 (298)
T d1gz8a_         158 TYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSE-IDQLFRIFRTLGTPDEVVWPGVTSMPDY  236 (298)
T ss_dssp             CTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHHHCCCCTTTSTTGGGSTTC
T ss_pred             cceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCH-HHHHHHHHHhcCCCchhhcccccccccc
Confidence              2347899999999877665 47899999999999999999999975421 1111111111110  0000000     0


Q ss_pred             cccccCCC-cchHH----HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          905 DPFIRGHV-SSIQN----EIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       905 d~~~~~~~-~~~~~----~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                      .+...... .....    .-.++.+++.+|++.||++|||++|+++-
T Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H  283 (298)
T d1gz8a_         237 KPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAH  283 (298)
T ss_dssp             CTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence            00000000 00000    11356678889999999999999999763

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-38  Score=343.39  Aligned_cols=251  Identities=22%  Similarity=0.291  Sum_probs=182.5

Q ss_pred             ccccccCCCCCccEEEEEEEecC-CcEEEEEEEecc--CcccccchHHHHHHHHhh--cCCCceeEEeeEEec-----CC
Q 002105          685 EENLTSRGKKGVSSSYKVRSLAN-DMQFVVKKIIDV--NTITTSSFWPDVSQFGKL--IMHPNIVRLHGVCRS-----EK  754 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~-~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~--~~H~niv~l~g~~~~-----~~  754 (966)
                      ++.+..+|+|+||.||+|++..+ ++.||||++...  .......+.+|+..+.++  .+|||||+++++|..     +.
T Consensus         9 Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~~   88 (305)
T d1blxa_           9 YECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRET   88 (305)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEE
T ss_pred             EEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccccCc
Confidence            45566789999999999998655 567899998543  223344567787765542  479999999999853     34


Q ss_pred             eeEEEEEccCCCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccc
Q 002105          755 AAYLVYEYIEGKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLA  830 (966)
Q Consensus       755 ~~~lv~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~  830 (966)
                      ..+++||||++|++.....    .+++.....++.|++.||+|||   +.+||||||||+|||+++++  .+++.|||.+
T Consensus        89 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH---~~~ivHrDiKp~NILi~~~~--~~kl~dfg~~  163 (305)
T d1blxa_          89 KLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSG--QIKLADFGLA  163 (305)
T ss_dssp             EEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTC--CEEECSCCSC
T ss_pred             eEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCEEecCCCccEEEEcCCC--Ceeecchhhh
Confidence            6899999999988765553    3889999999999999999999   45899999999999999655  4688999987


Q ss_pred             eec-----CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccc-
Q 002105          831 YCT-----DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWV-  904 (966)
Q Consensus       831 ~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  904 (966)
                      ...     .....||+.|||||++.+..|+.++||||+||++|||+||+.||.+... .+.+...... ........|. 
T Consensus       164 ~~~~~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~-~~~~~~i~~~-~~~~~~~~~~~  241 (305)
T d1blxa_         164 RIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSD-VDQLGKILDV-IGLPGEEDWPR  241 (305)
T ss_dssp             CCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHH-HCCCCGGGSCT
T ss_pred             hhhcccccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCH-HHHHHHHHHh-hCCCchhcccc
Confidence            542     2356799999999999999999999999999999999999999976421 2211111111 1000000000 


Q ss_pred             -------------cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          905 -------------DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       905 -------------d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                                   ............   .++.+++.+|++.||++|||++|+++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~dli~~mL~~dP~~R~sa~e~L~  292 (305)
T d1blxa_         242 DVALPRQAFHSKSAQPIEKFVTDID---ELGKDLLLKCLTFNPAKRISAYSALS  292 (305)
T ss_dssp             TCSSCGGGSCCCCCCCGGGTCCSCC---HHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             cccchhhhhccccccchhhccccCC---HHHHHHHHHHCcCChhHCcCHHHHhc
Confidence                         000000011111   24556788999999999999999865

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=2.9e-37  Score=333.90  Aligned_cols=251  Identities=13%  Similarity=0.120  Sum_probs=194.0

Q ss_pred             ccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCC
Q 002105          687 NLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGK  766 (966)
Q Consensus       687 ~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g  766 (966)
                      ....+|+||||.||+|++..+|+.||||.+....  ....+.+|++.+.++-+|+||+.+++++.++...++||||+ +|
T Consensus         9 i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~-~~   85 (293)
T d1csna_           9 VGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GP   85 (293)
T ss_dssp             EEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CC
T ss_pred             EEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc--CcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEec-CC
Confidence            3445799999999999998899999999875432  34567788888877545699999999999999999999999 68


Q ss_pred             CHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC---CCceEEEeccccceecC-----
Q 002105          767 ELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK---DEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       767 ~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~---~~~~~~~~~~~~~~~~~-----  834 (966)
                      +|.++++    .+++.++..++.|++.||+|||   +.+||||||||+||+++..   ....+++.|||++....     
T Consensus        86 ~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH---~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~  162 (293)
T d1csna_          86 SLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTK  162 (293)
T ss_dssp             BHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTC
T ss_pred             CHHHHHHhhccchhhHHHHHHHHHHHHHHHHHH---HCCceeccCCccceeecCcccccCCceEEcccceeEEcccCccc
Confidence            9999885    4889999999999999999999   6799999999999999753   24568999999986421     


Q ss_pred             --------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchh-hHHHHHHHhhccCccccccc
Q 002105          835 --------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHE-SIVEWARYCYSDCHLDTWVD  905 (966)
Q Consensus       835 --------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d  905 (966)
                              ....||+.|||||++.+..++.++|||||||++|||+||+.||.+...... ...+.+.........     
T Consensus       163 ~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~-----  237 (293)
T d1csna_         163 QHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPL-----  237 (293)
T ss_dssp             CBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCH-----
T ss_pred             cceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCCh-----
Confidence                    224689999999999999999999999999999999999999976433211 111111111000000     


Q ss_pred             ccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhccC
Q 002105          906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFRIS  954 (966)
Q Consensus       906 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~~~  954 (966)
                      +.+....+      .++.+++..|++.+|++||+++.+.+.|+++++..
T Consensus       238 ~~l~~~~p------~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~~~~~  280 (293)
T d1csna_         238 RELCAGFP------EEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERL  280 (293)
T ss_dssp             HHHTTTSC------HHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             HHhcCCCC------HHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHHc
Confidence            01111122      24666777899999999999999999998866543

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.8e-37  Score=337.40  Aligned_cols=248  Identities=13%  Similarity=0.120  Sum_probs=185.8

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCc-eeEEeeEEecCCeeEEEEEccC
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPN-IVRLHGVCRSEKAAYLVYEYIE  764 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~n-iv~l~g~~~~~~~~~lv~Ey~~  764 (966)
                      .....+|+|+||.||+|++..+|+.||||.+....  ...++..|++.+.+ ++|+| |+.+.+++.+++..++||||++
T Consensus        10 ~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~E~~i~~~-l~~~~~i~~~~~~~~~~~~~~ivme~~~   86 (299)
T d1ckia_          10 RLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKM-MQGGVGIPTIRWCGAEGDYNVMVMELLG   86 (299)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCT--TSCCHHHHHHHHHH-STTSTTCCCEEEEEEETTEEEEEEECCC
T ss_pred             EEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhc--cCHHHHHHHHHHHH-ccCCCcccEEEEEEecCCEEEEEEEEcC
Confidence            34456799999999999998899999999875432  34567888877777 56665 5555666678889999999995


Q ss_pred             CCCHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCC-CCceEEEeccccceecC-----
Q 002105          765 GKELSEVLR----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGK-DEPHLRLSVPGLAYCTD-----  834 (966)
Q Consensus       765 ~g~L~~~l~----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~-~~~~~~~~~~~~~~~~~-----  834 (966)
                       |++.+.+.    .+++.....++.|++.||+|||   +.+||||||||+|||++.. ....+++.|||++....     
T Consensus        87 -~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~  162 (299)
T d1ckia_          87 -PSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTH  162 (299)
T ss_dssp             -CBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTC
T ss_pred             -CchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHhhccccccCCCceeeeeccCcceeccccccc
Confidence             56666553    4899999999999999999999   5589999999999998643 34568999999986421     


Q ss_pred             --------CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCch--hhHHHHHHHhhccCcccccc
Q 002105          835 --------SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVH--ESIVEWARYCYSDCHLDTWV  904 (966)
Q Consensus       835 --------~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  904 (966)
                              ....||+.|||||.+.+..++.++|||||||++|||+||+.||.......  ..+..+.......      .
T Consensus       163 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~------~  236 (299)
T d1ckia_         163 QHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST------P  236 (299)
T ss_dssp             CBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHS------C
T ss_pred             cceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCC------C
Confidence                    23468999999999999999999999999999999999999997543221  1111111110000      0


Q ss_pred             cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhhc
Q 002105          905 DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKTLESCFR  952 (966)
Q Consensus       905 d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~L~~~~~  952 (966)
                      .+.....++      .++.+++..||+.+|++||+++++.+.|+.++.
T Consensus       237 ~~~~~~~~p------~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~~  278 (299)
T d1ckia_         237 IEVLCKGYP------SEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH  278 (299)
T ss_dssp             HHHHTTTSC------HHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHH
T ss_pred             hhHhccCCC------HHHHHHHHHHccCChhHCcCHHHHHHHHHHHHH
Confidence            011111222      356677889999999999999999999998654

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=7e-38  Score=338.34  Aligned_cols=248  Identities=19%  Similarity=0.260  Sum_probs=183.8

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ..+..+|+|+||.||+|+. .+|+.||||++....  ....+.+.+|+..+.+ ++|||||++++++..++..++||||+
T Consensus         5 ~~~~~iG~G~fg~Vy~~~~-~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~-l~hpnIv~~~~~~~~~~~~~i~~e~~   82 (286)
T d1ob3a_           5 HGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKE-LKHSNIVKLYDVIHTKKRLVLVFEHL   82 (286)
T ss_dssp             EEEEEEEEETTEEEEEEEE-TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGG-CCCTTBCCEEEEEECSSCEEEEEECC
T ss_pred             eeccEEecCCCcEEEEEEe-CCCCEEEEEEEehhhcChHHHHHHHHHHHHHHh-CCCCcEEeeeeecccCCceeEEEEee
Confidence            4456789999999999998 688999999985432  2224567888887777 79999999999999999999999999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC------
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD------  834 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~------  834 (966)
                      .++.+..+.+   .+++.....++.||+.||+|||+   .+||||||||+|||++.++  .++++|||.+....      
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~---~~IvHrDiKp~NIll~~~~--~~kl~DfG~a~~~~~~~~~~  157 (286)
T d1ob3a_          83 DQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREG--ELKIADFGLARAFGIPVRKY  157 (286)
T ss_dssp             SEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTS--CEEECCTTHHHHHCC-----
T ss_pred             hhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhcc---CcEEecCCCCceeeEcCCC--CEEecccccceecccCcccc
Confidence            9888877765   38999999999999999999994   5899999999999999764  57899999975422      


Q ss_pred             CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcccccc--------c
Q 002105          835 SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWV--------D  905 (966)
Q Consensus       835 ~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------d  905 (966)
                      ....+++.|+|||.+.+ ..++.++||||+||++|||+||+.||.+.. ..+......... .......|.        +
T Consensus       158 ~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~-~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~  235 (286)
T d1ob3a_         158 THEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVS-EADQLMRIFRIL-GTPNSKNWPNVTELPKYD  235 (286)
T ss_dssp             ----CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS-HHHHHHHHHHHH-CCCCTTTSTTGGGSTTCC
T ss_pred             ceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCC-HHHHHHHHHHhh-CCCChhhccchhhhhhcc
Confidence            23368899999999865 456999999999999999999999997542 122211111110 000000000        0


Q ss_pred             ccccC--------CCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          906 PFIRG--------HVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       906 ~~~~~--------~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .....        .....   ..++.+++.+|++.||++|||++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~---s~~~~dli~~~L~~dP~~R~s~~ell~  280 (286)
T d1ob3a_         236 PNFTVYEPLPWESFLKGL---DESGIDLLSKMLKLDPNQRITAKQALE  280 (286)
T ss_dssp             TTCCCCCCCCGGGTCCSC---CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cccccccCcchhhhcccC---CHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            00000        00111   135667888999999999999999864

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-37  Score=342.93  Aligned_cols=248  Identities=21%  Similarity=0.230  Sum_probs=180.3

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecC------CeeEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE------KAAYL  758 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~------~~~~l  758 (966)
                      +.....+|+|+||.||+|++..+|+.||||++....    ..+.+|+..+.+ ++|||||+++++|...      ...|+
T Consensus        22 Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~-l~h~niv~~~~~~~~~~~~~~~~~~~l   96 (350)
T d1q5ka_          22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRK-LDHCNIVRLRYFFYSSGEKKDEVYLNL   96 (350)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS----SSCCHHHHHHHH-CCCTTBCCEEEEEEEC--CCSCCEEEE
T ss_pred             cEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccc----hHHHHHHHHHHh-cCCCCCCcEEEEEEecCccCCceEEEE
Confidence            344556899999999999998899999999986432    234578887777 7999999999998542      35789


Q ss_pred             EEEccCCCCHHHHHH------cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEecccccee
Q 002105          759 VYEYIEGKELSEVLR------NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYC  832 (966)
Q Consensus       759 v~Ey~~~g~L~~~l~------~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~  832 (966)
                      |||||++|.+....+      .+++...+.++.||++||+|||   +.+||||||||+|||++.+. ..+|++|||++..
T Consensus        97 v~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH---~~~IiHrDiKp~NILl~~~~-~~~kl~DFG~a~~  172 (350)
T d1q5ka_          97 VLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDT-AVLKLCDFGSAKQ  172 (350)
T ss_dssp             EEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTT-CCEEECCCTTCEE
T ss_pred             EEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHH---hcCCcccCCCcceEEEecCC-CceeEecccchhh
Confidence            999999765444332      3899999999999999999999   66999999999999998653 3578999999865


Q ss_pred             cC-----CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHH-----------Hhh
Q 002105          833 TD-----SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWAR-----------YCY  895 (966)
Q Consensus       833 ~~-----~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~-----------~~~  895 (966)
                      ..     ....||+.|+|||.+.+ ..|+.++||||+||++|||++|+.||..... .+.+....+           ...
T Consensus       173 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~-~~~l~~i~~~~g~~~~~~~~~~~  251 (350)
T d1q5ka_         173 LVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSG-VDQLVEIIKVLGTPTREQIREMN  251 (350)
T ss_dssp             CCTTSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHHHC
T ss_pred             ccCCcccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCH-HHHHHHHHHHhCCChHHhhhhhc
Confidence            32     23478999999998764 5789999999999999999999999975422 121111111           000


Q ss_pred             c---cCccccc-ccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          896 S---DCHLDTW-VDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       896 ~---~~~~~~~-~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .   ....... ..+..........   .++.+++.+|++.||++|||++|+++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~dLl~~mL~~dP~~R~ta~e~L~  302 (350)
T d1q5ka_         252 PNYTEFKFPQIKAHPWTKVFRPRTP---PEAIALCSRLLEYTPTARLTPLEACA  302 (350)
T ss_dssp             C---CCCCCCCCCCCGGGTSCTTSC---HHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cchhhccccccccCchhhhcccCCC---HHHHHHHHHHccCChhHCcCHHHHhc
Confidence            0   0000000 0000000001111   24667788999999999999999985

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=1e-36  Score=335.98  Aligned_cols=190  Identities=22%  Similarity=0.306  Sum_probs=161.8

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEec--CCeeEEEEEc
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS--EKAAYLVYEY  762 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~--~~~~~lv~Ey  762 (966)
                      +..+..+|+|+||.||+|+...+|+.||||++...   ..+.+.+|+..+.++-.|||||++++++..  ....++||||
T Consensus        37 y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~---~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~  113 (328)
T d3bqca1          37 YQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEH  113 (328)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEEC
T ss_pred             eEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH---HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEee
Confidence            44566789999999999999899999999998532   235678888888774359999999999974  4568999999


Q ss_pred             cCCCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-----CCC
Q 002105          763 IEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-----SKS  837 (966)
Q Consensus       763 ~~~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-----~~~  837 (966)
                      |++|+|.++.+.+++.....++.||+.||+|||   +.+||||||||+|||++.+. ..++++|||.+....     ...
T Consensus       114 ~~~~~L~~~~~~l~e~~i~~i~~qil~aL~~LH---~~gIvHrDiKp~NILi~~~~-~~vkl~DFG~a~~~~~~~~~~~~  189 (328)
T d3bqca1         114 VNNTDFKQLYQTLTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEH-RKLRLIDWGLAEFYHPGQEYNVR  189 (328)
T ss_dssp             CCSCBGGGTTTSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTT-TEEEECCGGGCEECCTTCCCCSC
T ss_pred             cCCCcHHHHhcCCCHHHHHHHHHHHHHHHHHHh---hcccccccccccceEEcCCC-CeeeecccccceeccCCCccccc
Confidence            999999998889999999999999999999999   55999999999999998643 368999999986532     234


Q ss_pred             cCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCC
Q 002105          838 INSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADF  881 (966)
Q Consensus       838 ~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~  881 (966)
                      .+|+.|+|||.+.+. .++.++||||+||++|||++|+.||....
T Consensus       190 ~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~  234 (328)
T d3bqca1         190 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGH  234 (328)
T ss_dssp             CSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCS
T ss_pred             ccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCc
Confidence            689999999997765 57999999999999999999999987543

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-36  Score=333.50  Aligned_cols=253  Identities=18%  Similarity=0.304  Sum_probs=182.2

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEecc--CcccccchHHHHHHHHhhcCCCceeEEeeEEec--------CC
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDV--NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS--------EK  754 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~--~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~--------~~  754 (966)
                      +..+..+|+|+||.||+|++..+|+.||||++...  ......++.+|+..+.+ ++||||+++++++..        ++
T Consensus        12 Y~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~-l~h~nii~~~~~~~~~~~~~~~~~~   90 (318)
T d3blha1          12 YEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQL-LKHENVVNLIEICRTKASPYNRCKG   90 (318)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHH-CCCTTBCCEEEEEEC----------
T ss_pred             EEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHH-hcCCCccceEeeeecccccccccCc
Confidence            34566789999999999999889999999987543  22234457788887777 799999999999865        34


Q ss_pred             eeEEEEEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccce
Q 002105          755 AAYLVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY  831 (966)
Q Consensus       755 ~~~lv~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~  831 (966)
                      ..|+|||||+++.+..+..   .++......++.||++||+|||   +.+||||||||+|||++.+.  .++++|||++.
T Consensus        91 ~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~lH---~~~ivHrDlKp~NILl~~~~--~~kl~dfg~~~  165 (318)
T d3blha1          91 SIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDG--VLKLADFGLAR  165 (318)
T ss_dssp             CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTS--CEEECCCTTCE
T ss_pred             eEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHHHHHhc---cCCEEecCcCchheeecCCC--cEEeeecceee
Confidence            6899999999887766553   4788889999999999999999   55999999999999999764  57889999885


Q ss_pred             ecC----------CCCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCcc
Q 002105          832 CTD----------SKSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHL  900 (966)
Q Consensus       832 ~~~----------~~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~  900 (966)
                      ...          ...+||+.|+|||.+.+. .|+.|+||||+||++|||+||+.||.+... .+.. ............
T Consensus       166 ~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~-~~~~-~~i~~~~~~~~~  243 (318)
T d3blha1         166 AFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTE-QHQL-ALISQLCGSITP  243 (318)
T ss_dssp             ECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHH-HHHHHHHCCCCT
T ss_pred             ecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCH-HHHH-HHHHHhcCCCCh
Confidence            321          224689999999998765 689999999999999999999999975422 1111 111111110000


Q ss_pred             ccc--cc--------ccccCCCcchHHH------HHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          901 DTW--VD--------PFIRGHVSSIQNE------IVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       901 ~~~--~d--------~~~~~~~~~~~~~------~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      ..+  .+        ...........+.      -.++.+++.+|++.||++|||++|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~  304 (318)
T d3blha1         244 EVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN  304 (318)
T ss_dssp             TTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             hhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHc
Confidence            000  00        0000011111111      124567889999999999999999875

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=337.96  Aligned_cols=251  Identities=19%  Similarity=0.279  Sum_probs=179.7

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccC--cccccchHHHHHHHHhhcCCCceeEEeeEEecCC------ee
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVN--TITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK------AA  756 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~--~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~------~~  756 (966)
                      +..+..+|+|+||.||+|++..+|+.||||++....  ....+.+.+|+..+.+ ++|||||+++++|...+      ..
T Consensus        20 Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~-l~hpniv~l~~~~~~~~~~~~~~~~   98 (346)
T d1cm8a_          20 YRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKH-MRHENVIGLLDVFTPDETLDDFTDF   98 (346)
T ss_dssp             EEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHH-CCBTTBCCCSEEECSCSSTTTCCCC
T ss_pred             EEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHh-cCCCCeeEEEEEeccCccccccceE
Confidence            345567899999999999998899999999986432  1223457788888877 79999999999998654      57


Q ss_pred             EEEEEccCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC
Q 002105          757 YLVYEYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD  834 (966)
Q Consensus       757 ~lv~Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~  834 (966)
                      |+||||| +++|..+.+  .+++.....++.||+.||+|||   +.+||||||||+|||++.+.  .++++|||.+...+
T Consensus        99 ~lv~e~~-~~~l~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~IiHrDiKp~NIL~~~~~--~~kl~Dfg~a~~~~  172 (346)
T d1cm8a_          99 YLVMPFM-GTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDC--ELKILDFGLARQAD  172 (346)
T ss_dssp             EEEEECC-SEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTC--CEEECCCTTCEECC
T ss_pred             EEEEecc-cccHHHHHHhccccHHHHHHHHHHHHHHHHHHH---hCCCcccccCcchhhccccc--ccccccccceeccC
Confidence            9999999 578888776  5999999999999999999999   55999999999999999654  57899999987643


Q ss_pred             ---CCCcCCcccccccccCC-CCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhcc-------C-----
Q 002105          835 ---SKSINSSAYVAPETKES-KDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSD-------C-----  898 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~-~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-------~-----  898 (966)
                         ....||+.|+|||.+.+ ..++.++||||+||++|||++|+.||.+... ..............       .     
T Consensus       173 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (346)
T d1cm8a_         173 SEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDH-LDQLKEIMKVTGTPPAEFVQRLQSDEA  251 (346)
T ss_dssp             SSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHTCSCHHH
T ss_pred             CccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCCh-HHHHHHHHhccCCCcHHHHhhhcchhh
Confidence               34578999999998865 4568999999999999999999999976421 11111111100000       0     


Q ss_pred             -----cccccccccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          899 -----HLDTWVDPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       899 -----~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                           ..................   .++.+++.+|++.||++|||++|+++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~s---~~~~dli~~mL~~dP~~R~ta~eiL~H  301 (346)
T d1cm8a_         252 KNYMKGLPELEKKDFASILTNAS---PLAVNLLEKMLVLDAEQRVTAGEALAH  301 (346)
T ss_dssp             HHHHHHSCCCCCCCGGGTCTTCC---HHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             hhhhccCCcccccchHHhccCCC---HHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence                 000000000000001111   245678889999999999999999863

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=336.54  Aligned_cols=255  Identities=17%  Similarity=0.229  Sum_probs=181.6

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc-ccccchHHHHHHHHhhcCCCceeEEeeEEecCC----eeEEE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT-ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEK----AAYLV  759 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~-~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~----~~~lv  759 (966)
                      +..+..+|+|+||.||+|+...+|+.||||++..... ...+.+.+|+..+.+ ++|||||++++++..+.    ..+++
T Consensus        10 Y~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~-l~hp~iv~~~~~~~~~~~~~~~~~~l   88 (345)
T d1pmea_          10 YTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLR-FRHENIIGINDIIRAPTIEQMKDVYL   88 (345)
T ss_dssp             EEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHH-CCCTTBCCCCEEECCSSTTTCCCEEE
T ss_pred             eEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHH-cCCCCCCcEEEEEeeccccccceEEE
Confidence            4556778999999999999989999999999864332 223457788888877 79999999999997653    23555


Q ss_pred             EEccCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec----
Q 002105          760 YEYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT----  833 (966)
Q Consensus       760 ~Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~----  833 (966)
                      |||+.+|+|.++++  .+++.....++.|++.||+|||   +.+||||||||+|||++.++  .+++.|||++...    
T Consensus        89 ~~~~~~g~L~~~l~~~~l~~~~i~~i~~qil~al~yLH---~~~iiHRDIKp~NILl~~~~--~~kl~DfG~a~~~~~~~  163 (345)
T d1pmea_          89 VTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTC--DLKICDFGLARVADPDH  163 (345)
T ss_dssp             EEECCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTC--CEEECCCTTCEECCGGG
T ss_pred             EEeecCCchhhhhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCcceEEECCCC--CEEEcccCceeeccCCC
Confidence            66778999999996  5999999999999999999999   45999999999999999654  5789999987542    


Q ss_pred             -----CCCCcCCcccccccccC-CCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCc--------
Q 002105          834 -----DSKSINSSAYVAPETKE-SKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCH--------  899 (966)
Q Consensus       834 -----~~~~~~~~~y~aPE~~~-~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~--------  899 (966)
                           ....+||+.|+|||.+. ...++.++||||+||++|||+||+.||.+.... +..............        
T Consensus       164 ~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  242 (345)
T d1pmea_         164 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYL-DQLNHILGILGSPSQEDLNCIIN  242 (345)
T ss_dssp             CBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCSCCHHHHHTCCC
T ss_pred             ccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHH-HHHHHHhhhccCCChhhhhhhhh
Confidence                 23346899999999875 456789999999999999999999999764211 111011100000000        


Q ss_pred             --ccccccccccCCCcchHH----HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002105          900 --LDTWVDPFIRGHVSSIQN----EIVEIMNLALHCTAGDPTARPCASDVTKT  946 (966)
Q Consensus       900 --~~~~~d~~~~~~~~~~~~----~~~~~~~l~~~C~~~~P~~RPt~~~v~~~  946 (966)
                        ..................    --.++.+++.+|++.||++|||++|+++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~h  295 (345)
T d1pmea_         243 LKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  295 (345)
T ss_dssp             HHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence              000000000000000000    01246678899999999999999999863

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-36  Score=337.49  Aligned_cols=254  Identities=17%  Similarity=0.206  Sum_probs=180.5

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEec------CCee
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRS------EKAA  756 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~------~~~~  756 (966)
                      +..+..+|+|+||.||+|++..+|..||||++.....  ...+.+.+|+..+.+ ++|||||++++++..      .+..
T Consensus        19 Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~-l~hpnIv~~~~~f~~~~~~~~~~~~   97 (355)
T d2b1pa1          19 YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKC-VNHKNIISLLNVFTPQKTLEEFQDV   97 (355)
T ss_dssp             EEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCTTBCCCSEEECSCCSTTTCCEE
T ss_pred             eEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHh-cCCCCeeEEEEEEecccccccCcee
Confidence            4556678999999999999988999999999864322  222346677777767 699999999999964      3678


Q ss_pred             EEEEEccCCCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC--
Q 002105          757 YLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD--  834 (966)
Q Consensus       757 ~lv~Ey~~~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~--  834 (966)
                      |+|||||.+|.+..+...+++...+.++.||+.||+|||   +.+|+||||||+|||++.+.  .+++++||.+....  
T Consensus        98 ~iv~Ey~~~~l~~~~~~~~~~~~i~~~~~qil~gl~~LH---~~giiHrDlKP~Nil~~~~~--~~kl~df~~~~~~~~~  172 (355)
T d2b1pa1          98 YLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDC--TLKILDFGLARTAGTS  172 (355)
T ss_dssp             EEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTC--CEEECCCCC-------
T ss_pred             EEEEeccchHHHHhhhcCCCHHHHHHHHHHHHHHHHHhh---hcccccccCCcccccccccc--ceeeechhhhhccccc
Confidence            999999987777666667999999999999999999999   55999999999999999654  46788888765422  


Q ss_pred             ---CCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHH------------------
Q 002105          835 ---SKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARY------------------  893 (966)
Q Consensus       835 ---~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~------------------  893 (966)
                         ....+|+.|+|||++.+..++.++||||+||++|||++|+.||.+.... .........                  
T Consensus       173 ~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~  251 (355)
T d2b1pa1         173 FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYI-DQWNKVIEQLGTPCPEFMKKLQPTVRN  251 (355)
T ss_dssp             --------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCHHHHTTSCHHHHH
T ss_pred             cccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHH-HHHHHHHHhccCCCHHHHHHhhhhHHH
Confidence               3346899999999999999999999999999999999999999754211 111000000                  


Q ss_pred             hhcc-Cccc-----ccc-cccccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          894 CYSD-CHLD-----TWV-DPFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       894 ~~~~-~~~~-----~~~-d~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      .... ....     ... +...............++.+++.+|++.||++|||++||++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~  310 (355)
T d2b1pa1         252 YVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ  310 (355)
T ss_dssp             HHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             HhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence            0000 0000     000 00000111111123345778899999999999999999973

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-36  Score=326.54  Aligned_cols=253  Identities=19%  Similarity=0.259  Sum_probs=186.4

Q ss_pred             cccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          686 ENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       686 ~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      ..+..+|+|+||.||+|++..+|+.||||++.....  .....+.+|+..+.+ ++|||||+++++|..++..++||||+
T Consensus         5 ~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~-l~h~niv~~~~~~~~~~~~~iv~~~~   83 (292)
T d1unla_           5 EKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKE-LKHKNIVRLHDVLHSDKKLTLVFEFC   83 (292)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTT-CCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             EeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHh-cCcCCEEeeccccccccceeEEeeec
Confidence            445678999999999999999999999999854322  223457788888777 79999999999999999999999999


Q ss_pred             CCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecCC-----
Q 002105          764 EGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTDS-----  835 (966)
Q Consensus       764 ~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~~-----  835 (966)
                      .++++..+++   .+++..+..++.|+++||+|||   ..+||||||||+|||++.+.  .++++|||.+.....     
T Consensus        84 ~~~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH---~~~IvHrDiKP~NIli~~~~--~~kl~DFG~a~~~~~~~~~~  158 (292)
T d1unla_          84 DQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNG--ELKLANFGLARAFGIPVRCY  158 (292)
T ss_dssp             SEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTC--CEEECCCTTCEECCSCCSCC
T ss_pred             cccccccccccccccchhHHHHHHHHHHHHHHHhh---cCCEeeecccCcccccccCC--ceeeeecchhhcccCCCccc
Confidence            9999988875   4889999999999999999999   45999999999999999654  578999999865322     


Q ss_pred             -CCcCCcccccccccCCCC-CCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccc------c---
Q 002105          836 -KSINSSAYVAPETKESKD-ITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTW------V---  904 (966)
Q Consensus       836 -~~~~~~~y~aPE~~~~~~-~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---  904 (966)
                       ...+++.|+|||.+.... ++.++||||+||++|||++|+.||.......+.. ..+...........+      .   
T Consensus       159 ~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  237 (292)
T d1unla_         159 SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQL-KRIFRLLGTPTEEQWPSMTKLPDYK  237 (292)
T ss_dssp             CSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHH-HHHHHHHCCCCTTTCTTGGGSTTCC
T ss_pred             eeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHH-HHHHhhcCCCChhhhhhhhhccccc
Confidence             234678899999887665 6899999999999999999999975432222222 111111110000000      0   


Q ss_pred             -cccccC--CC-cchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          905 -DPFIRG--HV-SSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       905 -d~~~~~--~~-~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       .+....  .. ......-.++.+++.+|++.||.+|||++||++
T Consensus       238 ~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~  282 (292)
T d1unla_         238 PYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             CCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             ccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence             000000  00 000011124566778999999999999999865

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-36  Score=327.47  Aligned_cols=242  Identities=22%  Similarity=0.284  Sum_probs=183.7

Q ss_pred             ccccccCCCCCccEEEEEEEec---CCcEEEEEEEecc----CcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLA---NDMQFVVKKIIDV----NTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAY  757 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~---~~~~vavk~~~~~----~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~  757 (966)
                      +..+..+|+|+||.||+|+...   +|..||||++...    +....+.+.+|+..+.++-+|||||++++++.+++..+
T Consensus        26 y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~~~  105 (322)
T d1vzoa_          26 FELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLH  105 (322)
T ss_dssp             EEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEE
T ss_pred             eEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCcee
Confidence            4556678999999999998743   5789999988532    22234567889988888434489999999999999999


Q ss_pred             EEEEccCCCCHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceec-
Q 002105          758 LVYEYIEGKELSEVLR---NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCT-  833 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~---~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~-  833 (966)
                      +|||||++|+|.++++   .+.......++.|++.||+|+|   +.+||||||||+||++|.++  .+++.|||++... 
T Consensus       106 ~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH---~~~ivHrDiKp~Nill~~~~--~vkL~DFG~a~~~~  180 (322)
T d1vzoa_         106 LILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNG--HVVLTDFGLSKEFV  180 (322)
T ss_dssp             EEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTS--CEEESCSSEEEECC
T ss_pred             eeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhh---cCCEEeccCCccceeecCCC--CEEEeeccchhhhc
Confidence            9999999999999986   3677888889999999999999   55899999999999999764  5789999998642 


Q ss_pred             ------CCCCcCCcccccccccCCC--CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccccccc
Q 002105          834 ------DSKSINSSAYVAPETKESK--DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLDTWVD  905 (966)
Q Consensus       834 ------~~~~~~~~~y~aPE~~~~~--~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  905 (966)
                            .....|++.|+|||.+.+.  .++.|+||||+||++|||+||+.||.+.... +......+....       ..
T Consensus       181 ~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~-~~~~~i~~~~~~-------~~  252 (322)
T d1vzoa_         181 ADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEK-NSQAEISRRILK-------SE  252 (322)
T ss_dssp             GGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSC-CCHHHHHHHHHH-------CC
T ss_pred             ccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHhccc-------CC
Confidence                  1234689999999988754  4688999999999999999999999765322 111111111111       11


Q ss_pred             ccccCCCcchHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHH
Q 002105          906 PFIRGHVSSIQNEIVEIMNLALHCTAGDPTARPC-----ASDVTK  945 (966)
Q Consensus       906 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt-----~~~v~~  945 (966)
                      +.+....+      .++.+++.+|++.||++|||     ++|+++
T Consensus       253 ~~~~~~~s------~~~~~li~~~l~~dP~~R~s~~~~t~~eil~  291 (322)
T d1vzoa_         253 PPYPQEMS------ALAKDLIQRLLMKDPKKRLGCGPRDADEIKE  291 (322)
T ss_dssp             CCCCTTSC------HHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred             CCCcccCC------HHHHHHHHHHcccCHHHcCCCCcccHHHHHc
Confidence            11112222      25666778999999999995     677764

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-36  Score=331.30  Aligned_cols=253  Identities=17%  Similarity=0.249  Sum_probs=180.0

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCc--ccccchHHHHHHHHhhcCCCceeEEeeEEecC-----CeeE
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNT--ITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSE-----KAAY  757 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~--~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~-----~~~~  757 (966)
                      ++.+..+|+|+||.||+|++..+|+.||||++.....  ...+.+.+|+..+.+ ++|||||++++++...     ...+
T Consensus        20 Y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~-l~h~~iv~~~~~~~~~~~~~~~~~~   98 (348)
T d2gfsa1          20 YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKH-MKHENVIGLLDVFTPARSLEEFNDV   98 (348)
T ss_dssp             EEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHH-CCCTTBCCCSEEECSCSSTTTCCCC
T ss_pred             eEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHh-cCCCCeeeEEEEEeeccccccCceE
Confidence            4456678999999999999989999999999864322  223457788888877 6999999999999643     3456


Q ss_pred             EEEEccCCCCHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccceecC-
Q 002105          758 LVYEYIEGKELSEVLR--NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAYCTD-  834 (966)
Q Consensus       758 lv~Ey~~~g~L~~~l~--~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~~~~-  834 (966)
                      +||||+.+|+|.++++  .+++.+...++.||+.||+|||   +.+|+||||||+|||++.++  .+++.|||.+.... 
T Consensus        99 ~i~~~~~gg~L~~~~~~~~l~e~~~~~i~~qil~aL~~LH---~~giiHrDiKp~NILi~~~~--~~kl~dfg~a~~~~~  173 (348)
T d2gfsa1          99 YLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDC--ELKILDFGLARHTDD  173 (348)
T ss_dssp             EEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTC--CEEECCC----CCTG
T ss_pred             EEEEeecCCchhhhcccccccHHHHHHHHHHHHHHHHHHH---hCCCcccccCCccccccccc--cccccccchhcccCc
Confidence            7788889999999996  4999999999999999999999   55899999999999999764  46888999875432 


Q ss_pred             --CCCcCCcccccccccCCC-CCCCcchHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHhhccCccc----------
Q 002105          835 --SKSINSSAYVAPETKESK-DITEKGDIYGFGLILIDLLTGKSPADADFGVHESIVEWARYCYSDCHLD----------  901 (966)
Q Consensus       835 --~~~~~~~~y~aPE~~~~~-~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~----------  901 (966)
                        ....||+.|+|||...+. .++.++||||+||++|||++|+.||.+.... ... ..+.........+          
T Consensus       174 ~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~-~~~-~~i~~~~~~~~~~~~~~~~~~~~  251 (348)
T d2gfsa1         174 EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHI-DQL-KLILRLVGTPGAELLKKISSESA  251 (348)
T ss_dssp             GGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHH-HHH-HHHHHHHCCCCHHHHTTCCCHHH
T ss_pred             ccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHH-HHH-HHHHHhcCCCChHHhhhccchhh
Confidence              345678899999986665 4688999999999999999999999764211 111 1111000000000          


Q ss_pred             -ccccccccCCCcchH----HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          902 -TWVDPFIRGHVSSIQ----NEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       902 -~~~d~~~~~~~~~~~----~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                       .+.............    ..-.++.+++.+|++.||++|||++|+++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~  300 (348)
T d2gfsa1         252 RNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  300 (348)
T ss_dssp             HHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhc
Confidence             000000000000000    00124567888999999999999999986

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-31  Score=298.60  Aligned_cols=258  Identities=15%  Similarity=0.185  Sum_probs=178.4

Q ss_pred             ccccccCCCCCccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhh----------cCCCceeEEeeEEec--
Q 002105          685 EENLTSRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKL----------IMHPNIVRLHGVCRS--  752 (966)
Q Consensus       685 ~~~~~~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~----------~~H~niv~l~g~~~~--  752 (966)
                      +..+..+|+|+||.||+|+...+|+.||||++.... ...+.+.+|+..+.++          +.|||||++++++..  
T Consensus        15 Y~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~-~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~   93 (362)
T d1q8ya_          15 YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKG   93 (362)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEE
T ss_pred             EEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc-cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeecc
Confidence            445667899999999999998999999999985432 2234556676655542          247899999998864  


Q ss_pred             CCeeEEEEEccCCCCHHHH-HH-----cCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCC----ceE
Q 002105          753 EKAAYLVYEYIEGKELSEV-LR-----NLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDE----PHL  822 (966)
Q Consensus       753 ~~~~~lv~Ey~~~g~L~~~-l~-----~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~----~~~  822 (966)
                      ....+++|+++..+..... ..     .+++.....++.||++||+|||+.  .+|+||||||+|||++.+..    ..+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~--~~IvHrDlKp~NIll~~~~~~~~~~~~  171 (362)
T d1q8ya_          94 PNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRR--CGIIHTDIKPENVLMEIVDSPENLIQI  171 (362)
T ss_dssp             TTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHT--TCEECSCCSGGGEEEEEEETTTTEEEE
T ss_pred             ccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhh--cCcccccCChhHeeeeccCccccccee
Confidence            4567778887766543322 21     378888999999999999999952  48999999999999975432    357


Q ss_pred             EEeccccceec---CCCCcCCcccccccccCCCCCCCcchHHHHHHHHHHHHcCCCCCCCCCCc-----hhhHHHHHHHh
Q 002105          823 RLSVPGLAYCT---DSKSINSSAYVAPETKESKDITEKGDIYGFGLILIDLLTGKSPADADFGV-----HESIVEWARYC  894 (966)
Q Consensus       823 ~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S~Gv~l~el~tg~~p~~~~~~~-----~~~~~~~~~~~  894 (966)
                      ++.|||.+...   .....||+.|+|||+.....++.++||||+||+++||++|+.||......     .+.....+...
T Consensus       172 kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~l  251 (362)
T d1q8ya_         172 KIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELL  251 (362)
T ss_dssp             EECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHH
T ss_pred             eEeecccccccccccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHh
Confidence            89999987642   33457899999999999999999999999999999999999999754221     11111111100


Q ss_pred             h-----------------ccCccccccccc--------ccCCCcchHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002105          895 Y-----------------SDCHLDTWVDPF--------IRGHVSSIQNEIVEIMNLALHCTAGDPTARPCASDVTK  945 (966)
Q Consensus       895 ~-----------------~~~~~~~~~d~~--------~~~~~~~~~~~~~~~~~l~~~C~~~~P~~RPt~~~v~~  945 (966)
                      -                 ........+...        .............++.+++.+|++.||.+|||++|+++
T Consensus       252 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~  327 (362)
T d1q8ya_         252 GELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN  327 (362)
T ss_dssp             CSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred             CCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            0                 000000000000        00011112344567888999999999999999999975

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=2.7e-30  Score=282.57  Aligned_cols=250  Identities=29%  Similarity=0.436  Sum_probs=172.6

Q ss_pred             CcEEEccCCcccc--cCCCCccCCCCccEEEccC-CCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEc
Q 002105          350 LTVIDLSTNFLTG--KIPETLCDSGSLFKLILFS-NSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLD  426 (966)
Q Consensus       350 L~~L~Ls~N~l~~--~~p~~~~~~~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~Ld  426 (966)
                      ++.|+|++|.++|  .+|..+..+++|++|++++ |+++|.+|..+.++++|++|+|++|++.+..+..+..++.|++++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            4445555554444  2445555555555555553 555555666666666666666666666666666666666666666


Q ss_pred             ccCCCCCCccCcchhccCCCcEecCCCCcCCccCCC-CcCccc-ccccccccccccccCCCcccCcCCCCEEEccCCccC
Q 002105          427 ISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPD-SFGSDQ-LENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLF  504 (966)
Q Consensus       427 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  504 (966)
                      +++|.+.+.+|..+..++.|+.+++++|.+++.+|. ...+.. ++.+++++|++++..|..+..+..+ .+++++|...
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~  210 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLE  210 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEE
T ss_pred             cccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            666666666666666667777777777777666665 334433 3667777777777777777666544 6778888887


Q ss_pred             CCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCCcCcccCCcccccCCCCCeeeCcCCcccccCCCCCc
Q 002105          505 GDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKIPQTLGRVASLVQVNISHNHFHGSLPSTGA  584 (966)
Q Consensus       505 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~ip~~~~  584 (966)
                      |.+|..+..+++|+.+++++|.+++.+| .++.+++|+.|||++|+++|.+|..++++++|++|||++|+|+|.+|..+.
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~  289 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN  289 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCccc
Confidence            7888877788888888888888877655 467777888888888888888888888888888888888888888887777


Q ss_pred             cCCCccccccCC-CCCCC
Q 002105          585 FLAINATAVAGN-DLCGG  601 (966)
Q Consensus       585 ~~~~~~~~~~gn-~lcg~  601 (966)
                      +..+....+.|| .+||.
T Consensus       290 L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         290 LQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             GGGSCGGGTCSSSEEEST
T ss_pred             CCCCCHHHhCCCccccCC
Confidence            777777777777 57775

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=4.8e-27  Score=264.09  Aligned_cols=324  Identities=25%  Similarity=0.307  Sum_probs=147.3

Q ss_pred             CCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEE
Q 002105           83 HLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLD  162 (966)
Q Consensus        83 ~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  162 (966)
                      .+.+|++|++++|.|+ .++ + +..+++|++|+|++|+|++..+++.+++|++|++++|.+++..  .++.+++|+.|+
T Consensus        42 ~l~~l~~L~l~~~~I~-~l~-g-l~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~  116 (384)
T d2omza2          42 DLDQVTTLQADRLGIK-SID-G-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLT  116 (384)
T ss_dssp             HHTTCCEEECCSSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             HhCCCCEEECCCCCCC-Ccc-c-cccCCCCCEEeCcCCcCCCCccccCCccccccccccccccccc--cccccccccccc
Confidence            3455666666666665 332 1 3344666666666666665445566666666666666665432  255666666666


Q ss_pred             ccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccc
Q 002105          163 LGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG  242 (966)
Q Consensus       163 L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  242 (966)
                      +++|.+++..+  ......+..+....|.+....+.................     ....+...+.........|... 
T Consensus       117 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-  188 (384)
T d2omza2         117 LFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPLANLTTLERLDISSNKVS-  188 (384)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGGTTCTTCCEEECCSSCCC-
T ss_pred             ccccccccccc--ccccccccccccccccccccccccccccccccccccccc-----hhhhhccccccccccccccccc-
Confidence            66665543322  223344445554444443222221111111111111111     1122333333334444333322 


Q ss_pred             cCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCC
Q 002105          243 QIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLAS  322 (966)
Q Consensus       243 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  322 (966)
                       .+..+..+++++.+++++|.+++..|  +...++|++|++++|.++..  +.+..+++|+.|++++|.+++..+  +..
T Consensus       189 -~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~  261 (384)
T d2omza2         189 -DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG  261 (384)
T ss_dssp             -CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             -cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccc
Confidence             23334455555555555555554322  33445555555555555431  234455555555555555554322  444


Q ss_pred             CCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceee
Q 002105          323 MPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVR  402 (966)
Q Consensus       323 l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~  402 (966)
                      +++|+.|++++|++++..  .+..+..++.++++.|.+++.  ..+..+++++.|++++|++++..+  +..+++|++|+
T Consensus       262 ~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~  335 (384)
T d2omza2         262 LTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF  335 (384)
T ss_dssp             CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred             cccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cccCCCCCEEE
Confidence            555555555555554322  234444555555555554431  123333444444444444443221  33444444444


Q ss_pred             ccccccCCcCChhhcCCCcccEEcccCCCCCC
Q 002105          403 LQNNRLSGELSSEFTRLPLVYFLDISGNDLSG  434 (966)
Q Consensus       403 L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~  434 (966)
                      +++|++++. + .+..+++|++|++++|++++
T Consensus       336 L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         336 FANNKVSDV-S-SLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             CCSSCCCCC-G-GGGGCTTCCEEECCSSCCCB
T ss_pred             CCCCCCCCC-h-hHcCCCCCCEEECCCCcCCC
Confidence            444444321 1 23344444444444444443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=3.8e-27  Score=264.93  Aligned_cols=342  Identities=24%  Similarity=0.283  Sum_probs=160.6

Q ss_pred             CCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEE
Q 002105          131 LSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIY  210 (966)
Q Consensus       131 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  210 (966)
                      +.+|++|++++|.++. + +.+..+++|++|+|++|++++..  .++++++|++|++++|++.+..  .++.+++|+.|+
T Consensus        43 l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~  116 (384)
T d2omza2          43 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLT  116 (384)
T ss_dssp             HTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             hCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--cccccccccccc
Confidence            3344444444444432 1 23444445555555555444322  1444555555555555544321  244555555555


Q ss_pred             ccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcc
Q 002105          211 LGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSG  290 (966)
Q Consensus       211 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  290 (966)
                      +++|.+++..+  ......+..+....|.+....+................     .....+...+.........|... 
T Consensus       117 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-  188 (384)
T d2omza2         117 LFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNKVS-  188 (384)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSCCC-
T ss_pred             ccccccccccc--cccccccccccccccccccccccccccccccccccccc-----chhhhhccccccccccccccccc-
Confidence            55555443221  22334445555555544432221111111111111111     11122333333334444433322 


Q ss_pred             cCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccC
Q 002105          291 EIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCD  370 (966)
Q Consensus       291 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~  370 (966)
                       ....+..+++++.+++++|.+++..|  +..+++|+.|++++|.++..  +.+..+++|+.+++++|.+++..+  +  
T Consensus       189 -~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~--  259 (384)
T d2omza2         189 -DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L--  259 (384)
T ss_dssp             -CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G--
T ss_pred             -cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--c--
Confidence             22334444555555555555554332  23344555555555555431  234445555555555555543221  2  


Q ss_pred             CCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEec
Q 002105          371 SGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLN  450 (966)
Q Consensus       371 ~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~  450 (966)
                                            ..+++|+.|++++|++++..  .+..++.++.++++.|++++.  ..+..+++++.|+
T Consensus       260 ----------------------~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~  313 (384)
T d2omza2         260 ----------------------SGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLT  313 (384)
T ss_dssp             ----------------------TTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEE
T ss_pred             ----------------------cccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEE
Confidence                                  23334444444444443322  133444444555555554432  1234455555555


Q ss_pred             CCCCcCCccCCCCcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCce
Q 002105          451 LAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQ  526 (966)
Q Consensus       451 Ls~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  526 (966)
                      +++|++++.. .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++++.+|  +.++++|+.|+|++|.
T Consensus       314 ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         314 LYFNNISDIS-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CCSSCCSCCG-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             CCCCCCCCCc-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            5555555432 23345566666666666654 22 57778888888888888876654  7788888888888873

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2.8e-24  Score=233.40  Aligned_cols=243  Identities=24%  Similarity=0.371  Sum_probs=156.1

Q ss_pred             CcccceeeCCCCCEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCC--
Q 002105           50 CKWNGISCQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP--  127 (966)
Q Consensus        50 c~w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~--  127 (966)
                      |.|++|.|++           ++++ .+|+.+.  +.+++|||++|+|+ .+|+..|..+++|++|++++|.+....|  
T Consensus        10 c~~~~~~C~~-----------~~L~-~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~   74 (305)
T d1xkua_          10 CHLRVVQCSD-----------LGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGA   74 (305)
T ss_dssp             EETTEEECTT-----------SCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred             ecCCEEEecC-----------CCCC-ccCCCCC--CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhh
Confidence            7899999975           2344 4455553  57889999999987 7887777777888888888888776433  


Q ss_pred             CCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCc--ccCCcccccCCc
Q 002105          128 IGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLI--GSIPREIGQLRN  205 (966)
Q Consensus       128 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~  205 (966)
                      +..+++|++|++++|+++. +|..+  ...|+.|++..|.+.+..+..+.....++.++...|...  ...+..+..+++
T Consensus        75 f~~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~  151 (305)
T d1xkua_          75 FAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK  151 (305)
T ss_dssp             TTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred             hhCCCccCEecccCCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccc
Confidence            5677777788887777764 44332  356777777777776655555666666667766666432  233445566666


Q ss_pred             ceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccC
Q 002105          206 LKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSD  285 (966)
Q Consensus       206 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  285 (966)
                      |+++++++|.++ .+|..+  +++|++|++++|...+..+..|.+++.+++|++++|++++..+..+.++++|++|+|++
T Consensus       152 L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~  228 (305)
T d1xkua_         152 LSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN  228 (305)
T ss_dssp             CCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred             cCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccc
Confidence            666666666665 334332  45566666666666665666666666666666666666655555566666666666666


Q ss_pred             CcCcccCchhhcCCCCCceecccCCCCCC
Q 002105          286 NYLSGEIPEEVIQLQNLEILHLFSNNFTG  314 (966)
Q Consensus       286 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  314 (966)
                      |.++ .+|.++..+++|+.|+|++|+++.
T Consensus       229 N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         229 NKLV-KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             SCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             cccc-ccccccccccCCCEEECCCCccCc
Confidence            6665 345555556666666666665553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.1e-23  Score=228.73  Aligned_cols=223  Identities=23%  Similarity=0.327  Sum_probs=117.1

Q ss_pred             CCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEcc
Q 002105          133 RLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLG  212 (966)
Q Consensus       133 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  212 (966)
                      ++++|||++|+|+...+.+|.++++|++|++++|.+....|..|.++++|++|++++|+++. +|..+  ...++.|++.
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~~  108 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVH  108 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccch--hhhhhhhhcc
Confidence            44444444444443333445555555555555555554444455555555555555555542 23222  2344555555


Q ss_pred             CCCCCCCCCcCccCCCCCCEEEeeccccc--ccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcc
Q 002105          213 YNNLSGEIPKEIGDLTSLNHLDLVYNNLT--GQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSG  290 (966)
Q Consensus       213 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  290 (966)
                      .|.+.+..+..+.....++.++...|...  ...+..+..+++|+++++++|.++. +|..+  +++|+.|++++|..++
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~~  185 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITK  185 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCE
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCccc--CCccCEEECCCCcCCC
Confidence            55554433333444455555555554322  2233445555566666666665542 33222  3556666666666655


Q ss_pred             cCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccc
Q 002105          291 EIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTG  362 (966)
Q Consensus       291 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~  362 (966)
                      ..+..+..++.++.|++++|.+++..+.++.++++|++|+|++|.++ .+|..+..+++|++|+|++|+|+.
T Consensus       186 ~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             CChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCc
Confidence            55555555666666666666665555555566666666666666665 345556666666666666666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.5e-24  Score=230.04  Aligned_cols=223  Identities=26%  Similarity=0.264  Sum_probs=118.1

Q ss_pred             EEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEcc-CCc
Q 002105          209 IYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLS-DNY  287 (966)
Q Consensus       209 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls-~N~  287 (966)
                      ++.+++.++ .+|..+.  +.+++|+|++|+++...+.+|.++++|++|++++|++....+..+.++..++.++.. .|.
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            345555554 4454442  345666666666665444556666666666666666655555555555555555443 333


Q ss_pred             CcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCC
Q 002105          288 LSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPET  367 (966)
Q Consensus       288 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~  367 (966)
                      ++...+..+.++++|+.|++++|.+....+..+..+++|+.+++++                        |.+++..+..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~------------------------N~l~~i~~~~  148 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD------------------------NALQALPDDT  148 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS------------------------SCCCCCCTTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcc------------------------ccccccChhH
Confidence            4433344444445555555555444444444444444444444444                        4444444444


Q ss_pred             ccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCc
Q 002105          368 LCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQ  447 (966)
Q Consensus       368 ~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~  447 (966)
                      |....+|+.|++++|++++..+.+|.++++|+++++++|++++..|..|..+++|++||+++|++.+..+..+..+++|+
T Consensus       149 f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~  228 (284)
T d1ozna_         149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             hccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccC
Confidence            44444445555555555444445555555555555555555555555555555556666666666555555555555666


Q ss_pred             EecCCCCcCCc
Q 002105          448 MLNLAGNNFSG  458 (966)
Q Consensus       448 ~L~Ls~N~l~~  458 (966)
                      +|+|++|.+.+
T Consensus       229 ~L~l~~N~l~C  239 (284)
T d1ozna_         229 YLRLNDNPWVC  239 (284)
T ss_dssp             EEECCSSCEEC
T ss_pred             EEEecCCCCCC
Confidence            66666665543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.8e-23  Score=224.50  Aligned_cols=224  Identities=23%  Similarity=0.230  Sum_probs=176.2

Q ss_pred             CEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEecc-c
Q 002105          183 QIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLY-Q  261 (966)
Q Consensus       183 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~  261 (966)
                      ..++.++++++ .+|..+.  +.+++|+|++|+++...+..|.++++|++|++++|++....+..+.+++.++.+... .
T Consensus        14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            34567777776 5676654  578999999999997666789999999999999999999888889999999998765 5


Q ss_pred             cccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCC
Q 002105          262 NKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIP  341 (966)
Q Consensus       262 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  341 (966)
                      |.++...+..|.++++|++|++++|.+....+..+....+|+.+++++|++++..+..|..+++|+.|++++|++++..+
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~  170 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence            66777778889999999999999999987777888889999999999999998778888889999999999999987777


Q ss_pred             ccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccCCCCCCCCCCccccCccCceeeccccccC
Q 002105          342 SNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFSNSLEGKIPNSLSTCKSLRRVRLQNNRLS  409 (966)
Q Consensus       342 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  409 (966)
                      ..|..+++|+.+++++|.+++..|..|..+++|+.|++++|++.+..|.+|..+++|++|++++|.+.
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            78888888888888888887766666655555555555555554444444444444444444444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.8e-22  Score=211.67  Aligned_cols=203  Identities=25%  Similarity=0.252  Sum_probs=146.0

Q ss_pred             eCCCCCEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcE
Q 002105           57 CQNSTHVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEI  136 (966)
Q Consensus        57 c~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~  136 (966)
                      |...+...++|.++++|+. +|+.+.  +++++|||++|+|+ .+|...|..+++|++|+|++|+|+...+++.+++|++
T Consensus         6 ~~~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~   81 (266)
T d1p9ag_           6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT   81 (266)
T ss_dssp             EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCE
T ss_pred             EcccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCC-CcCHHHhhccccccccccccccccccccccccccccc
Confidence            4444444455778888884 566654  57899999999998 6888888888999999999998886555677888888


Q ss_pred             EeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCC
Q 002105          137 LDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNL  216 (966)
Q Consensus       137 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l  216 (966)
                      |+|++|++++ .+..+..+++|++|++++|.+.+..+..+..+.++++|++++|.+....+..+..+++|+.|++++|++
T Consensus        82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             cccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence            8888888874 566777788888888888877766666677777777777777777665555666666667777777666


Q ss_pred             CCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccC
Q 002105          217 SGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLT  265 (966)
Q Consensus       217 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~  265 (966)
                      ++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|.+.
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            6655556666666666666666666 45666666666666666666543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8e-22  Score=209.09  Aligned_cols=180  Identities=23%  Similarity=0.184  Sum_probs=148.0

Q ss_pred             ccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecCCCCcCCccCCCCcCcccccccccc
Q 002105          396 KSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLS  475 (966)
Q Consensus       396 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~Ls  475 (966)
                      +++++|+|++|+|++..+..|.++++|++|+|++|+|+...  .+..+++|++|+|++|++++..+.+..+++|+.|+++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence            35677777777777666677777777777777777776432  2356778888888888887665556677888888888


Q ss_pred             cccccccCCCcccCcCCCCEEEccCCccCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeCCCCcCcccC
Q 002105          476 ENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDLSENQLSGKI  555 (966)
Q Consensus       476 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~~  555 (966)
                      +|.+....+..+..+.++..|++++|.+....+..+..++.|+.|++++|+|++..+..|..+++|+.|||++|+|+ .+
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l  187 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             ccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence            88888877888888999999999999998888888888999999999999999888888999999999999999998 78


Q ss_pred             CcccccCCCCCeeeCcCCccccc
Q 002105          556 PQTLGRVASLVQVNISHNHFHGS  578 (966)
Q Consensus       556 p~~l~~l~~L~~l~ls~N~l~g~  578 (966)
                      |..+..+++|+.|++++|++.+.
T Consensus       188 p~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ChhHCCCCCCCEEEecCCCCCCC
Confidence            88888899999999999998764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=3.5e-17  Score=180.08  Aligned_cols=313  Identities=28%  Similarity=0.310  Sum_probs=154.0

Q ss_pred             CEEEEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCC
Q 002105           62 HVNAIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSN  141 (966)
Q Consensus        62 ~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~  141 (966)
                      +++.|||++++++. +|+.   +++|++|+|++|+|+ .+|..    ..+|+.|++++|+++....  -.+.|++||+++
T Consensus        39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~l~~--lp~~L~~L~L~~  107 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKALSD--LPPLLEYLGVSN  107 (353)
T ss_dssp             TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSCCCS--CCTTCCEEECCS
T ss_pred             CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccchhhh--hccccccccccc
Confidence            45677888888763 4542   467788888888887 67753    2577777877777763211  113577777777


Q ss_pred             CCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCC
Q 002105          142 NMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIP  221 (966)
Q Consensus       142 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  221 (966)
                      |.+.. +|. ++.+++|++|++++|.+.... .   ....+..+.+..+...  .+..+..++.++.++++.|.... .+
T Consensus       108 n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~-~~  178 (353)
T d1jl5a_         108 NQLEK-LPE-LQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK-LP  178 (353)
T ss_dssp             SCCSS-CCC-CTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS-CC
T ss_pred             ccccc-ccc-hhhhccceeeccccccccccc-c---ccccccchhhcccccc--ccccccccccceecccccccccc-cc
Confidence            77763 443 466777777777776654322 1   2344555555544432  23344555556666666655442 11


Q ss_pred             cCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCC
Q 002105          222 KEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQN  301 (966)
Q Consensus       222 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  301 (966)
                      ..   ....+.+....+.+. .+| .+..++.|+.+++++|.... .+.   ...++..+.+.++.+...          
T Consensus       179 ~~---~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~----------  239 (353)
T d1jl5a_         179 DL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL----------  239 (353)
T ss_dssp             CC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC----------
T ss_pred             cc---ccccccccccccccc-ccc-cccccccccccccccccccc-ccc---cccccccccccccccccc----------
Confidence            11   112334444433333 122 23445555555555554432 221   123344444444444321          


Q ss_pred             CceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccC
Q 002105          302 LEILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEIPSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFS  381 (966)
Q Consensus       302 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~  381 (966)
                                     +.   ..+.+...++..+.+.+.. .   -.......++..|.+.+..    ...++|++|++++
T Consensus       240 ---------------~~---~~~~l~~~~~~~~~~~~l~-~---l~~~~~~~~~~~~~~~~~~----~~~~~L~~L~Ls~  293 (353)
T d1jl5a_         240 ---------------PE---LPQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRSLC----DLPPSLEELNVSN  293 (353)
T ss_dssp             ---------------CC---CCTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSEEC----CCCTTCCEEECCS
T ss_pred             ---------------cc---ccccccccccccccccccc-c---ccchhcccccccCcccccc----ccCCCCCEEECCC
Confidence                           11   1223333333333332210 0   0112233444444433221    1123455555555


Q ss_pred             CCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCCCCccCcchhccCCCcEecC
Q 002105          382 NSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDLSGRIGEQKWEMTSLQMLNL  451 (966)
Q Consensus       382 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l~~~~~~~~~~l~~L~~L~L  451 (966)
                      |+++ .+|..   +++|+.|+|++|+|+. +|.   .+++|+.|++++|+++. +|..   ..+|+.|.+
T Consensus       294 N~l~-~lp~~---~~~L~~L~L~~N~L~~-l~~---~~~~L~~L~L~~N~L~~-lp~~---~~~L~~L~~  351 (353)
T d1jl5a_         294 NKLI-ELPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLRE-FPDI---PESVEDLRM  351 (353)
T ss_dssp             SCCS-CCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred             CccC-ccccc---cCCCCEEECCCCcCCc-ccc---ccCCCCEEECcCCcCCC-CCcc---ccccCeeEC
Confidence            5554 23332   3456666666666653 332   23466677777777663 3432   234555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=4.6e-17  Score=179.12  Aligned_cols=96  Identities=28%  Similarity=0.313  Sum_probs=53.7

Q ss_pred             CCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccC
Q 002105          110 NSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLAS  189 (966)
Q Consensus       110 ~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  189 (966)
                      .+|++|||++|.++. +| ..+++|++|+|++|+|+ .+|+.   +.+|+.|++++|.++. ++. +  .+.|++|++++
T Consensus        38 ~~l~~LdLs~~~L~~-lp-~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LP-ELPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSD-L--PPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSC-CC-SCCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCS-C--CTTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCC-CC-CCCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhh-h--ccccccccccc
Confidence            457788888877764 33 23467777777777776 45544   3456677777776542 221 0  12355555555


Q ss_pred             CCCcccCCcccccCCcceEEEccCCCCC
Q 002105          190 NQLIGSIPREIGQLRNLKWIYLGYNNLS  217 (966)
Q Consensus       190 n~l~~~~p~~l~~l~~L~~L~L~~N~l~  217 (966)
                      |.+.. +|. ++.+++|++|++++|.+.
T Consensus       108 n~l~~-lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         108 NQLEK-LPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             SCCSS-CCC-CTTCTTCCEEECCSSCCS
T ss_pred             ccccc-ccc-hhhhccceeecccccccc
Confidence            55542 332 344555555555555443

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.73  E-value=2.9e-19  Score=178.85  Aligned_cols=159  Identities=16%  Similarity=0.065  Sum_probs=111.4

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccCcc----------cc--------cchHHHHHHHHhhcCCCceeEEeeEEe
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVNTI----------TT--------SSFWPDVSQFGKLIMHPNIVRLHGVCR  751 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~~~----------~~--------~~~~~e~~~~~~~~~H~niv~l~g~~~  751 (966)
                      .+|+||+|.||+|+. .+|..||||.+......          ..        .....|...+.+ +.|+++++.+++..
T Consensus         7 ~IG~G~~g~Vy~a~~-~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~v~~~~~~~~   84 (191)
T d1zara2           7 LMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQK-LQGLAVPKVYAWEG   84 (191)
T ss_dssp             EEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHH-TTTSSSCCEEEEET
T ss_pred             EeeeCcceEEEEEEC-CCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHH-ccCCCcceEEEecC
Confidence            468999999999997 78999999976421100          00        112234455555 68999999887642


Q ss_pred             cCCeeEEEEEccCCCCHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCeEeecCCCCcEEEcCCCCceEEEeccccce
Q 002105          752 SEKAAYLVYEYIEGKELSEVLRNLSWERRRKVAIGIAKALRFLHFHCSPSVVAGDVSPGKVIVDGKDEPHLRLSVPGLAY  831 (966)
Q Consensus       752 ~~~~~~lv~Ey~~~g~L~~~l~~l~~~~~~~i~~~ia~~l~yLH~~~~~~iiHrDlk~~Nill~~~~~~~~~~~~~~~~~  831 (966)
                          .++||||++++.+.    .+++....+++.|+++|++|||   ..+|+||||||+|||++++   .+++.|||.+.
T Consensus        85 ----~~lvme~~~~~~~~----~l~~~~~~~i~~ql~~~l~~lH---~~giiHrDiKP~NILv~~~---~~~liDFG~a~  150 (191)
T d1zara2          85 ----NAVLMELIDAKELY----RVRVENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVSEE---GIWIIDFPQSV  150 (191)
T ss_dssp             ----TEEEEECCCCEEGG----GCCCSCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEETT---EEEECCCTTCE
T ss_pred             ----CEEEEEeecccccc----chhhHHHHHHHHHHHHHHHHHh---hCCEEEccCChhheeeeCC---CEEEEECCCcc
Confidence                37999999987654    3566667789999999999999   4599999999999999853   46788999886


Q ss_pred             ecCCCCcCCcccccc------cccCCCCCCCcchHHHHHHHH
Q 002105          832 CTDSKSINSSAYVAP------ETKESKDITEKGDIYGFGLIL  867 (966)
Q Consensus       832 ~~~~~~~~~~~y~aP------E~~~~~~~~~~~Dv~S~Gv~l  867 (966)
                      .......  ..|...      |.+ .+.|+.++|+||..--+
T Consensus       151 ~~~~~~~--~~~l~rd~~~~~~~f-~r~y~~~~d~~s~~~~~  189 (191)
T d1zara2         151 EVGEEGW--REILERDVRNIITYF-SRTYRTEKDINSAIDRI  189 (191)
T ss_dssp             ETTSTTH--HHHHHHHHHHHHHHH-HHHHCCCCCHHHHHHHH
T ss_pred             cCCCCCc--HHHHHHHHHHHHHHH-cCCCCCcccHHHHHHHH
Confidence            5432211  112211      111 35678899999975433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=2.6e-17  Score=169.45  Aligned_cols=187  Identities=26%  Similarity=0.384  Sum_probs=94.4

Q ss_pred             CCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEE
Q 002105           83 HLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLD  162 (966)
Q Consensus        83 ~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  162 (966)
                      .+.+|+.|++++|+|+ .++.  +..+++|++|++++|.+++..|+..+++|++|++++|.++. + +.+..+++|++++
T Consensus        39 ~l~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~  113 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLD  113 (227)
T ss_dssp             HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEE
T ss_pred             HcCCcCEEECCCCCCC-cchh--HhcCCCCcEeecCCceeeccccccccccccccccccccccc-c-ccccccccccccc
Confidence            3445555555555554 3421  33445555555555555544444555555555555554442 2 1244444444444


Q ss_pred             ccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccc
Q 002105          163 LGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTG  242 (966)
Q Consensus       163 L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  242 (966)
                      ++++                        ...+.  ..+...+.++.+.++.+.+...  ..+..+++|++|++++|.+..
T Consensus       114 l~~~------------------------~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~  165 (227)
T d1h6ua2         114 LTST------------------------QITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD  165 (227)
T ss_dssp             CTTS------------------------CCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCC
T ss_pred             cccc------------------------ccccc--chhccccchhhhhchhhhhchh--hhhcccccccccccccccccc
Confidence            4444                        43321  1233444555555555554321  224455556666666655543


Q ss_pred             cCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceeccc
Q 002105          243 QIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLF  308 (966)
Q Consensus       243 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  308 (966)
                      .  ..++++++|++|+|++|++++ ++ .+.++++|++|++++|++++..  .+.++++|+.|+++
T Consensus       166 ~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         166 L--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             C--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             c--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            2  225556666666666666653 22 2556666666666666665432  25566666666664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2.4e-17  Score=169.68  Aligned_cols=203  Identities=23%  Similarity=0.328  Sum_probs=118.6

Q ss_pred             EEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCc
Q 002105          114 FLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLI  193 (966)
Q Consensus       114 ~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~  193 (966)
                      .++++.+.+++..+...+.+|++|++++|.++. + +.+..+++|++|++++|.+.+..|  +..+++|+++++++|.++
T Consensus        23 ~~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~   98 (227)
T d1h6ua2          23 KIAAGKSNVTDTVTQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK   98 (227)
T ss_dssp             HHHTTCSSTTSEECHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred             HHHhCCCCcCCcCCHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc
Confidence            345555555555444556677777777777764 3 346777777777777777765433  667777777777777665


Q ss_pred             ccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhh
Q 002105          194 GSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSIL  273 (966)
Q Consensus       194 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~  273 (966)
                      . + ..+..+++|+.++++++...+.  ..+...+.++.+.++.+.+...  ..+.++++|++|++++|.+...  ..+.
T Consensus        99 ~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~  170 (227)
T d1h6ua2          99 N-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLA  170 (227)
T ss_dssp             C-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGT
T ss_pred             c-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhc
Confidence            3 2 2466677777777777665432  2345556666666666655432  2345556666666666665432  2255


Q ss_pred             cCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCCCCCCCCccEEEcc
Q 002105          274 GLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSSLASMPKLQVLQLW  332 (966)
Q Consensus       274 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  332 (966)
                      ++++|+.|++++|++++. + .+..+++|++|++++|++++..  .+.++++|+.|+++
T Consensus       171 ~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         171 NLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             TCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             ccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            566666666666665532 2 2455555555555555555322  14455555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.7e-17  Score=169.28  Aligned_cols=85  Identities=18%  Similarity=0.248  Sum_probs=40.4

Q ss_pred             CCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCC-cCCCCCCCCCEEEccC-CCCcccCCcccccCCcceEEE
Q 002105          133 RLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIP-LSISNITSLQIFTLAS-NQLIGSIPREIGQLRNLKWIY  210 (966)
Q Consensus       133 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~  210 (966)
                      ++++|||++|+++...+..|.++++|++|++++|.+...+| ..|.+++.++++.+.. |.+....+..|..+++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            34444555555543333445555555555555555443322 2344455555554432 344444444444555555555


Q ss_pred             ccCCCCC
Q 002105          211 LGYNNLS  217 (966)
Q Consensus       211 L~~N~l~  217 (966)
                      +++|.+.
T Consensus       110 l~~~~l~  116 (242)
T d1xwdc1         110 ISNTGIK  116 (242)
T ss_dssp             EESCCCC
T ss_pred             cchhhhc
Confidence            5555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2e-16  Score=164.40  Aligned_cols=199  Identities=15%  Similarity=0.088  Sum_probs=102.5

Q ss_pred             CCCEEEeecccccccCCcCCCCCCccceEeccccccCCCC-ChhhhcCCCCCEEEcc-CCcCcccCchhhcCCCCCceec
Q 002105          229 SLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSI-PKSILGLKSLVSFDLS-DNYLSGEIPEEVIQLQNLEILH  306 (966)
Q Consensus       229 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls-~N~l~~~~p~~~~~l~~L~~L~  306 (966)
                      ++++|++++|+++...+..|.++++|++|++++|.+...+ +..|.+++.++++++. .|.+....+..|..+++|+.|+
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4555555555555433344555555555555555544322 2334555555555543 2444444445555555566666


Q ss_pred             ccCCCCCCCCC-CCCCCCCCccEEEccCCcCcccCCccccCCC-CCcEEEccCCcccccCCCCccCCCCccEE-EccCCC
Q 002105          307 LFSNNFTGKIP-SSLASMPKLQVLQLWSNQFSGEIPSNLGKQN-NLTVIDLSTNFLTGKIPETLCDSGSLFKL-ILFSNS  383 (966)
Q Consensus       307 L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~-~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L-~l~~N~  383 (966)
                      +++|.+....+ ..+..+..+..+...++.+....+..+..++ .+..+++++|.++...+..+ ...++..+ .+++|+
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNN  188 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTT
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc-cchhhhccccccccc
Confidence            65555543221 1223344454555555555544444444432 56666666666664333332 33333333 345555


Q ss_pred             CCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEccc
Q 002105          384 LEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDIS  428 (966)
Q Consensus       384 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs  428 (966)
                      ++...+..|.++++|++|+|++|+|+...+..|.+++.|+++++.
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            654444456666667777776666665555556666666665554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.4e-16  Score=161.58  Aligned_cols=179  Identities=23%  Similarity=0.372  Sum_probs=107.0

Q ss_pred             EcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcc
Q 002105           91 NLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVG  170 (966)
Q Consensus        91 ~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  170 (966)
                      ++..+.+.+.++..   .+.+|++|++++|.++...++..+++|++|+|++|++++. + .++.+++|++|++++|++++
T Consensus        30 ~l~~~~~~~~~~~~---~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~  104 (210)
T d1h6ta2          30 NLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD  104 (210)
T ss_dssp             HTTCSCTTSEECHH---HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC
T ss_pred             HhCcCccCCccCHH---HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc
Confidence            44455555444432   1245666666666665544445566666666666666542 2 24566666666666666653


Q ss_pred             cCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCC
Q 002105          171 EIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGN  250 (966)
Q Consensus       171 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  250 (966)
                       +| .+.++++|+.|++++|.+..  ...+..+++|+.+++++|.+++  +..+..+++|+++++++|++++ ++ .+.+
T Consensus       105 -l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~  176 (210)
T d1h6ta2         105 -LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAG  176 (210)
T ss_dssp             -GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTT
T ss_pred             -cc-cccccccccccccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccc-cc-cccC
Confidence             33 35666666666666666542  2345666677777777776653  2345666777777777777764 22 2667


Q ss_pred             CCccceEeccccccCCCCChhhhcCCCCCEEEcc
Q 002105          251 LSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLS  284 (966)
Q Consensus       251 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  284 (966)
                      +++|++|+|++|+++. +| .+.++++|++|+|+
T Consensus       177 l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         177 LTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             CCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            7777777777777763 33 46777777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=2.4e-16  Score=159.80  Aligned_cols=179  Identities=26%  Similarity=0.356  Sum_probs=99.9

Q ss_pred             ECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCccc
Q 002105          116 NLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGS  195 (966)
Q Consensus       116 ~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  195 (966)
                      +++.+.+++.++...+.+|++|++++|.++.. + .+..+++|++|+|++|.+++..  .++++++|++|++++|++++ 
T Consensus        30 ~l~~~~~~~~~~~~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-  104 (210)
T d1h6ta2          30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-  104 (210)
T ss_dssp             HTTCSCTTSEECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-
T ss_pred             HhCcCccCCccCHHHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-
Confidence            45555555544444455666666666666532 2 2555666666666666665432  24556666666666666653 


Q ss_pred             CCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcC
Q 002105          196 IPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGL  275 (966)
Q Consensus       196 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  275 (966)
                      +| .+..+++|+.|++++|.+..  ...+..+++++.+++++|.+++  +..+..+++|+++++++|++++. + .+.++
T Consensus       105 l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l  177 (210)
T d1h6ta2         105 LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGL  177 (210)
T ss_dssp             GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTC
T ss_pred             cc-cccccccccccccccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCC
Confidence            22 35556666666666665542  2345556666666666666553  23345566666666666666542 2 25566


Q ss_pred             CCCCEEEccCCcCcccCchhhcCCCCCceeccc
Q 002105          276 KSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLF  308 (966)
Q Consensus       276 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  308 (966)
                      ++|++|++++|.++. +| .+..+++|++|+|+
T Consensus       178 ~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         178 TKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             CCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            666666666666653 33 35566666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.5e-19  Score=206.93  Aligned_cols=374  Identities=21%  Similarity=0.149  Sum_probs=230.7

Q ss_pred             CcceEEEccCCCCCCCC-CcCccCCCCCCEEEeecccccc----cCCcCCCCCCccceEeccccccCCCC----Chhhh-
Q 002105          204 RNLKWIYLGYNNLSGEI-PKEIGDLTSLNHLDLVYNNLTG----QIPPSFGNLSNLRYLFLYQNKLTGSI----PKSIL-  273 (966)
Q Consensus       204 ~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~----p~~l~-  273 (966)
                      .+|+.||+++|++++.. .+-+..++++++|+|++|.++.    .++..+..+++|++|+|++|+++..-    ...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            36889999999987421 2335667888999999998763    23445677888999999998875211    11121 


Q ss_pred             cCCCCCEEEccCCcCccc----CchhhcCCCCCceecccCCCCCCCCCCC----C-CCCCCccEEEccCCcCcccC----
Q 002105          274 GLKSLVSFDLSDNYLSGE----IPEEVIQLQNLEILHLFSNNFTGKIPSS----L-ASMPKLQVLQLWSNQFSGEI----  340 (966)
Q Consensus       274 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~----l-~~l~~L~~L~L~~N~l~~~~----  340 (966)
                      ...+|++|+|++|.++..    ++..+..+++|++|++++|.++......    + ...............+....    
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            224789999999988754    3455667888999999888775321100    0 11112233333333322110    


Q ss_pred             CccccCCCCCcEEEccCCcccccC----CCCc-cCCCCccEEEccCCCCCCCC----CCccccCccCceeeccccccCCc
Q 002105          341 PSNLGKQNNLTVIDLSTNFLTGKI----PETL-CDSGSLFKLILFSNSLEGKI----PNSLSTCKSLRRVRLQNNRLSGE  411 (966)
Q Consensus       341 p~~~~~~~~L~~L~Ls~N~l~~~~----p~~~-~~~~~L~~L~l~~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~  411 (966)
                      -..+.....++.++++++......    ...+ ........+.+..+.+....    ...+...+.++.+++++|++...
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence            112234567778888877654210    0000 11223456666666543211    12234567788899988876432


Q ss_pred             -----CChhhcCCCcccEEcccCCCCCCcc----CcchhccCCCcEecCCCCcCCccCCC------CcCccccccccccc
Q 002105          412 -----LSSEFTRLPLVYFLDISGNDLSGRI----GEQKWEMTSLQMLNLAGNNFSGKLPD------SFGSDQLENLDLSE  476 (966)
Q Consensus       412 -----~~~~~~~l~~L~~LdLs~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~p~------~~~~~~L~~L~Ls~  476 (966)
                           .+..+.....++.+++++|.+....    ...+...+.++.+++++|.++.....      ......|+.+++++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence                 2334456778899999999887432    22345578889999999988642111      01235688888988


Q ss_pred             ccccccCCC----cccCcCCCCEEEccCCccCCC----Chhhcc-ccccccccccCCceeccc----cCccCCCCCCCcE
Q 002105          477 NRFSGTIPR----SFGRLSELMQLKISRNKLFGD----IPEELS-SCKKLVSLDLSNNQLSGH----IPASLSEMPVLGQ  543 (966)
Q Consensus       477 N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~  543 (966)
                      |.++.....    .+....+|++|+|++|++...    ++..+. ..+.|++|+|++|.|+..    ++..+...++|+.
T Consensus       322 ~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~  401 (460)
T d1z7xw1         322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE  401 (460)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred             cchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCE
Confidence            888754322    234556889999999988643    333333 456789999999988753    4455666788999


Q ss_pred             EeCCCCcCcccCCccc----c-cCCCCCeeeCcCCcccc
Q 002105          544 LDLSENQLSGKIPQTL----G-RVASLVQVNISHNHFHG  577 (966)
Q Consensus       544 LdLs~N~l~g~~p~~l----~-~l~~L~~l~ls~N~l~g  577 (966)
                      |||++|+|+......+    . +...|+.+++.+|.+..
T Consensus       402 L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         402 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             EECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            9999998875433222    2 33468889998888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=2.9e-16  Score=157.84  Aligned_cols=127  Identities=28%  Similarity=0.417  Sum_probs=52.8

Q ss_pred             CCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCE
Q 002105          153 GSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNH  232 (966)
Q Consensus       153 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  232 (966)
                      ..+++|++|++++|++++..|  ++++++|++|++++|.+.. ++ .+.++++|+.|++++|.+...  ..+..+++|+.
T Consensus        59 ~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~  132 (199)
T d2omxa2          59 EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNR  132 (199)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred             ccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-ccccccccccccccccccccc--cccchhhhhHH
Confidence            334444444444444433221  3444444444444444332 11 234444444444444443321  22344444444


Q ss_pred             EEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcCCCCCEEEccCCcCc
Q 002105          233 LDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGLKSLVSFDLSDNYLS  289 (966)
Q Consensus       233 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  289 (966)
                      |++++|++.. + +.+..+++|++|++.+|++++.  ..+.++++|++|++++|+++
T Consensus       133 L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         133 LELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             EECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             hhhhhhhhcc-c-ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCC
Confidence            4444444432 1 2244444445555544444432  12444444444444444444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=8.5e-17  Score=160.81  Aligned_cols=127  Identities=19%  Similarity=0.270  Sum_probs=56.3

Q ss_pred             ceecccCCCCCCCCCCCCCCCCCccEEEccCCcCcccC-CccccCCCCCcEEEccCCcccccCCCCccCCCCccEEEccC
Q 002105          303 EILHLFSNNFTGKIPSSLASMPKLQVLQLWSNQFSGEI-PSNLGKQNNLTVIDLSTNFLTGKIPETLCDSGSLFKLILFS  381 (966)
Q Consensus       303 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~l~~  381 (966)
                      +.++.++++++ .+|..+.  +++++|+|++|++++.+ +..|..+++|+.|+|++|.+.+..+..+..+.+|+.|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            34555555555 3343331  34555555555554322 23344455555555555555444444444444444444444


Q ss_pred             CCCCCCCCCccccCccCceeeccccccCCcCChhhcCCCcccEEcccCCCC
Q 002105          382 NSLEGKIPNSLSTCKSLRRVRLQNNRLSGELSSEFTRLPLVYFLDISGNDL  432 (966)
Q Consensus       382 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~LdLs~N~l  432 (966)
                      |+++...|.+|.++++|++|+|++|+|++..+.+|..+++|++|+|++|.+
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            444443344444444444444444444443343444444444444333333

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=8.5e-16  Score=154.36  Aligned_cols=160  Identities=26%  Similarity=0.354  Sum_probs=92.7

Q ss_pred             CCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccC
Q 002105          110 NSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLAS  189 (966)
Q Consensus       110 ~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  189 (966)
                      .+|++|++++|.++....+..+++|++|+|++|++++..|  ++++++|++|++++|.+... + .+.++++|+.|++++
T Consensus        40 ~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~~  115 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFN  115 (199)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEECCS
T ss_pred             cCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-ccccccccccccccc
Confidence            4555555555555433233445556666666665554322  55666666666666655432 2 255666666666666


Q ss_pred             CCCcccCCcccccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCC
Q 002105          190 NQLIGSIPREIGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIP  269 (966)
Q Consensus       190 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  269 (966)
                      |.....  ..+..+++|+.|++++|.+.. + +.+..+++|++|++++|++++. + .++++++|++|++++|+++. ++
T Consensus       116 ~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~  188 (199)
T d2omxa2         116 NQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS  188 (199)
T ss_dssp             SCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG
T ss_pred             cccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc
Confidence            655432  235566666777777666652 2 3466667777777777776643 2 36677777777777777764 22


Q ss_pred             hhhhcCCCCCEE
Q 002105          270 KSILGLKSLVSF  281 (966)
Q Consensus       270 ~~l~~l~~L~~L  281 (966)
                       .+..+++|++|
T Consensus       189 -~l~~L~~L~~L  199 (199)
T d2omxa2         189 -VLAKLTNLESL  199 (199)
T ss_dssp             -GGGGCTTCSEE
T ss_pred             -cccCCCCCCcC
Confidence             46666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=2.3e-16  Score=157.57  Aligned_cols=128  Identities=26%  Similarity=0.275  Sum_probs=66.3

Q ss_pred             cEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccC-CcCCCCCCCCCEEEccCCCCcccCCcccccCCcceEEEccC
Q 002105          135 EILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEI-PLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKWIYLGY  213 (966)
Q Consensus       135 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  213 (966)
                      +++|.++++++ .+|..+.  +++++|+|++|.+++.+ +..|.++++|+.|++++|.+.+..+..+..+++|++|+|++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            34455555554 3443332  34555555555554322 33344555555555555555555555555555555555555


Q ss_pred             CCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccC
Q 002105          214 NNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLT  265 (966)
Q Consensus       214 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~  265 (966)
                      |+++...|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            5555444445555555555555555555555555555555555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.1e-19  Score=201.73  Aligned_cols=106  Identities=20%  Similarity=0.358  Sum_probs=55.5

Q ss_pred             CEEEEEcCCCCccccc-cccccCCCCCCEEEcCCCCCcc----ccChhhhhcCCCCcEEECCCCCCCCC----CC--C-C
Q 002105           62 HVNAIELSAKNISGKI-SSSIFHLPHVESINLSSNQLSG----EIPSDIFSSSNSLRFLNLSNNNFTGP----VP--I-G  129 (966)
Q Consensus        62 ~v~~L~L~~~~l~~~~-~~~~~~l~~L~~L~Ls~N~l~g----~ip~~~~~~l~~L~~L~Ls~N~l~~~----~~--~-~  129 (966)
                      .++.||++++++++.. ..-+..++++++|+|++|.++.    .|. .++..+++|++|||++|.|+..    +.  + .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~-~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHH-HHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4667777777776532 2234456677777777776652    111 2234456677777776666420    00  0 1


Q ss_pred             CCCCCcEEeCCCCCCCCc----CCCCcCCCCCcCEEEccCCCC
Q 002105          130 SLSRLEILDLSNNMLSGK----IPEEIGSFSGLKVLDLGGNVL  168 (966)
Q Consensus       130 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l  168 (966)
                      ...+|++|+|++|.++..    ++..+..+++|++|+|++|.+
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            223466666666655432    233344555555555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.1e-15  Score=159.10  Aligned_cols=125  Identities=17%  Similarity=0.236  Sum_probs=64.4

Q ss_pred             CEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCC-CCCCCCCcEEeCCCCCCCCc-CCCCcCCCCCcCEEEccC
Q 002105           88 ESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVP-IGSLSRLEILDLSNNMLSGK-IPEEIGSFSGLKVLDLGG  165 (966)
Q Consensus        88 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~  165 (966)
                      ++|||+++.+.+.+...+..  ..+..+.++...+..+.. .....+|++|||+++.++.. ++..+.++++|++|+|++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            35677766654333333332  234556665554443221 23445667777776665532 233455666666666666


Q ss_pred             CCCcccCCcCCCCCCCCCEEEccCC-CCccc-CCcccccCCcceEEEccCC
Q 002105          166 NVLVGEIPLSISNITSLQIFTLASN-QLIGS-IPREIGQLRNLKWIYLGYN  214 (966)
Q Consensus       166 N~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~N  214 (966)
                      +.+....+..++.+++|++|+++++ .++.. +..-+..+++|++|+++++
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccc
Confidence            6665555555566666666666664 23211 1111234555555555553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.8e-14  Score=135.75  Aligned_cols=113  Identities=17%  Similarity=0.156  Sum_probs=76.1

Q ss_pred             ccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCc
Q 002105           79 SSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGL  158 (966)
Q Consensus        79 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  158 (966)
                      +.+.+...++.|||++|+|+ .||. .+..+++|++|||++|.|+....+..+++|++|++++|+++...+..+..+++|
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             HhccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccccccc
Confidence            45667778899999999987 6763 556668888888888888754445667777777777777775544445567777


Q ss_pred             CEEEccCCCCcccCC-cCCCCCCCCCEEEccCCCCc
Q 002105          159 KVLDLGGNVLVGEIP-LSISNITSLQIFTLASNQLI  193 (966)
Q Consensus       159 ~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~  193 (966)
                      ++|++++|.+..... ..+..+++|++|++++|.++
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccc
Confidence            777777776653211 23455555666666555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.5e-14  Score=153.71  Aligned_cols=219  Identities=18%  Similarity=0.211  Sum_probs=131.2

Q ss_pred             EEEcCCCCccccccccccCCCCCCEEEcCCCCCccccChhhhhcCCCCcEEECCCCCCCCCC---CCCCCCCCcEEeCCC
Q 002105           65 AIELSAKNISGKISSSIFHLPHVESINLSSNQLSGEIPSDIFSSSNSLRFLNLSNNNFTGPV---PIGSLSRLEILDLSN  141 (966)
Q Consensus        65 ~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~l~~L~~L~Ls~  141 (966)
                      .+||+++.+.......+.. ..+..+.++...+...+. ..+ ...+|++|||+++.++...   .+..+++|++|+|++
T Consensus         4 ~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~-~~~-~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           4 TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLA-EHF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             EEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCC-SCC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             EEECCCCCCCchHHHHHHh-ccceEeeccccccccchh-hhc-cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            5677777665332222211 234566666555442221 222 2357888888888776421   146778888888888


Q ss_pred             CCCCCcCCCCcCCCCCcCEEEccCC-CCccc-CCcCCCCCCCCCEEEccCCC-Ccc-cCCccccc-CCcceEEEccCC--
Q 002105          142 NMLSGKIPEEIGSFSGLKVLDLGGN-VLVGE-IPLSISNITSLQIFTLASNQ-LIG-SIPREIGQ-LRNLKWIYLGYN--  214 (966)
Q Consensus       142 N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~-l~~L~~L~L~~N--  214 (966)
                      +.++...+..++.+++|++|+++++ .++.. +..-+.++++|++|+++++. ++. .+...+.. .++|+.|+++++  
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            8887766777788888888888885 44321 12223467888888888753 332 12222333 357888888754  


Q ss_pred             CCCCC-CCcCccCCCCCCEEEeecc-cccccCCcCCCCCCccceEecccc-ccCCCCChhhhcCCCCCEEEccCC
Q 002105          215 NLSGE-IPKEIGDLTSLNHLDLVYN-NLTGQIPPSFGNLSNLRYLFLYQN-KLTGSIPKSILGLKSLVSFDLSDN  286 (966)
Q Consensus       215 ~l~~~-~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N  286 (966)
                      .++.. +...+.++++|++|++++| .+++.....+.++++|++|++++| .++......++++++|+.|+++++
T Consensus       161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            23211 1112345677777887765 456555666677777777777774 455444455666777777777765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=3.2e-13  Score=123.53  Aligned_cols=100  Identities=27%  Similarity=0.357  Sum_probs=45.5

Q ss_pred             EEECCCCCCCCCCCCCCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCc
Q 002105          114 FLNLSNNNFTGPVPIGSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLI  193 (966)
Q Consensus       114 ~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~  193 (966)
                      +|+|++|+++...+++.+.+|++||+++|.++ .+|+.++.+++|++|++++|.++. +| .++++++|++|++++|++.
T Consensus         2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             EEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCC
T ss_pred             EEEcCCCCCCCCcccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccC
Confidence            34444444443222344445555555555554 244445555555555555555543 22 2444555555555555444


Q ss_pred             ccC-CcccccCCcceEEEccCCCC
Q 002105          194 GSI-PREIGQLRNLKWIYLGYNNL  216 (966)
Q Consensus       194 ~~~-p~~l~~l~~L~~L~L~~N~l  216 (966)
                      ... ...++.+++|++|++++|.+
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCchhhcCCCCCCEEECCCCcC
Confidence            321 12344444444444444444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.1e-13  Score=133.32  Aligned_cols=110  Identities=18%  Similarity=0.147  Sum_probs=60.3

Q ss_pred             CCCCCCcEEeCCCCCCCCcCCCCcCCCCCcCEEEccCCCCcccCCcCCCCCCCCCEEEccCCCCcccCCcccccCCcceE
Q 002105          129 GSLSRLEILDLSNNMLSGKIPEEIGSFSGLKVLDLGGNVLVGEIPLSISNITSLQIFTLASNQLIGSIPREIGQLRNLKW  208 (966)
Q Consensus       129 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  208 (966)
                      .++.+|++|||++|+|+. ++..+..+++|++|+|++|.++.. + .|..+++|++|++++|+++...+..+..+++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc-C-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence            344556666666666653 355555666667777776666532 2 3556666666666666665444444445566666


Q ss_pred             EEccCCCCCCCCC-cCccCCCCCCEEEeeccccc
Q 002105          209 IYLGYNNLSGEIP-KEIGDLTSLNHLDLVYNNLT  241 (966)
Q Consensus       209 L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~  241 (966)
                      |++++|.++.... ..+..+++|++|++++|.++
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ceeccccccccccccccccccccchhhcCCCccc
Confidence            6666665542111 23444455555555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=3.8e-12  Score=116.21  Aligned_cols=87  Identities=28%  Similarity=0.383  Sum_probs=38.8

Q ss_pred             cccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCC-ChhhhcCCCC
Q 002105          200 IGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSI-PKSILGLKSL  278 (966)
Q Consensus       200 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L  278 (966)
                      ++.+++|++|++++|.++ .+|..++.+++|++|++++|.++. +| .+.++++|++|++++|+++... ...+..+++|
T Consensus        16 l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L   92 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL   92 (124)
T ss_dssp             GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred             cccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCC
Confidence            344444444444444443 234444444444444444444442 22 2444445555555555444321 1234444555


Q ss_pred             CEEEccCCcCc
Q 002105          279 VSFDLSDNYLS  289 (966)
Q Consensus       279 ~~L~Ls~N~l~  289 (966)
                      ++|++++|.++
T Consensus        93 ~~L~l~~N~i~  103 (124)
T d1dcea3          93 VLLNLQGNSLC  103 (124)
T ss_dssp             CEEECTTSGGG
T ss_pred             CEEECCCCcCC
Confidence            55555555443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.31  E-value=8.2e-14  Score=152.54  Aligned_cols=242  Identities=19%  Similarity=0.252  Sum_probs=135.3

Q ss_pred             CCCCCCCCccEEEccCCcCccc----CCccccCCCCCcEEEccCCcccccC---CCCccCCCCccEEEccCCCCCCCCCC
Q 002105          318 SSLASMPKLQVLQLWSNQFSGE----IPSNLGKQNNLTVIDLSTNFLTGKI---PETLCDSGSLFKLILFSNSLEGKIPN  390 (966)
Q Consensus       318 ~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~~~~L~~L~Ls~N~l~~~~---p~~~~~~~~L~~L~l~~N~l~~~~p~  390 (966)
                      ..+....+|+.|+|++|.+...    +-..+...++|+.++++++......   |..+.                 .+..
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~-----------------~l~~   87 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR-----------------LLLQ   87 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH-----------------HHHH
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHH-----------------HHHH
Confidence            3445567788888888877432    2234556677778887766543211   10000                 0011


Q ss_pred             ccccCccCceeeccccccCCcC----ChhhcCCCcccEEcccCCCCCCccCcc-------------hhccCCCcEecCCC
Q 002105          391 SLSTCKSLRRVRLQNNRLSGEL----SSEFTRLPLVYFLDISGNDLSGRIGEQ-------------KWEMTSLQMLNLAG  453 (966)
Q Consensus       391 ~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~LdLs~N~l~~~~~~~-------------~~~l~~L~~L~Ls~  453 (966)
                      .+..+++|+.|+|++|.++...    ...+...++|+.|++++|.+.......             ....+.|+.+++++
T Consensus        88 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~  167 (344)
T d2ca6a1          88 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  167 (344)
T ss_dssp             HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             HHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccc
Confidence            1223444555555555544321    222334455555555555543210000             11244566666666


Q ss_pred             CcCCccCCC-----CcCccccccccccccccccc-----CCCcccCcCCCCEEEccCCccCCC----Chhhccccccccc
Q 002105          454 NNFSGKLPD-----SFGSDQLENLDLSENRFSGT-----IPRSFGRLSELMQLKISRNKLFGD----IPEELSSCKKLVS  519 (966)
Q Consensus       454 N~l~~~~p~-----~~~~~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~  519 (966)
                      |+++...-.     ......|+.|+|++|.++..     +...+..+++|+.|+|++|.++..    +...+..+++|++
T Consensus       168 n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~  247 (344)
T d2ca6a1         168 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  247 (344)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             ccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchh
Confidence            665422111     11234567777777766531     334566778888888888887532    3455677888888


Q ss_pred             cccCCceeccccCcc----CC--CCCCCcEEeCCCCcCccc----CCcccc-cCCCCCeeeCcCCccc
Q 002105          520 LDLSNNQLSGHIPAS----LS--EMPVLGQLDLSENQLSGK----IPQTLG-RVASLVQVNISHNHFH  576 (966)
Q Consensus       520 L~Ls~N~l~~~~p~~----l~--~l~~L~~LdLs~N~l~g~----~p~~l~-~l~~L~~l~ls~N~l~  576 (966)
                      |+|++|.|++.-...    +.  ..+.|+.||+++|+++..    +...+. +.+.|+.|++++|.+.
T Consensus       248 L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            999998887542222    22  235789999999998753    223332 5678999999999885

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.30  E-value=1.2e-13  Score=151.25  Aligned_cols=90  Identities=21%  Similarity=0.243  Sum_probs=44.8

Q ss_pred             ccccCCCCCCEEEcCCCCCccccCh---hhhhcCCCCcEEECCCCCCCCCC---C---------CCCCCCCcEEeCCCCC
Q 002105           79 SSIFHLPHVESINLSSNQLSGEIPS---DIFSSSNSLRFLNLSNNNFTGPV---P---------IGSLSRLEILDLSNNM  143 (966)
Q Consensus        79 ~~~~~l~~L~~L~Ls~N~l~g~ip~---~~~~~l~~L~~L~Ls~N~l~~~~---~---------~~~l~~L~~L~Ls~N~  143 (966)
                      .++.....|+.|+|++|.|...-..   ..+...++|+.|+++++.+....   +         +..+++|++|||++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            3455566777777777766421111   12233466666666665443210   0         1344556666666666


Q ss_pred             CCCc----CCCCcCCCCCcCEEEccCCCC
Q 002105          144 LSGK----IPEEIGSFSGLKVLDLGGNVL  168 (966)
Q Consensus       144 l~~~----~p~~~~~l~~L~~L~L~~N~l  168 (966)
                      +...    +...+...++|++|++++|.+
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             cccccccchhhhhcccccchheecccccc
Confidence            5432    122233445555666655544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.5e-11  Score=114.57  Aligned_cols=109  Identities=22%  Similarity=0.188  Sum_probs=85.0

Q ss_pred             cccccccccccccccCCCcccCcCCCCEEEccCCc-cCCCChhhccccccccccccCCceeccccCccCCCCCCCcEEeC
Q 002105          468 QLENLDLSENRFSGTIPRSFGRLSELMQLKISRNK-LFGDIPEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDL  546 (966)
Q Consensus       468 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdL  546 (966)
                      ..+.++.+++.+. ..|..+..+++|++|++++|+ ++...+..|.++++|+.|+|++|+|+...|..|..+++|+.|||
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3455666776665 456677788888888887664 77767778888999999999999998877888888999999999


Q ss_pred             CCCcCcccCCcccccCCCCCeeeCcCCccccc
Q 002105          547 SENQLSGKIPQTLGRVASLVQVNISHNHFHGS  578 (966)
Q Consensus       547 s~N~l~g~~p~~l~~l~~L~~l~ls~N~l~g~  578 (966)
                      ++|+|+...+..|..+ .|+.|+|++|+|.+.
T Consensus        88 s~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~  118 (156)
T d2ifga3          88 SFNALESLSWKTVQGL-SLQELVLSGNPLHCS  118 (156)
T ss_dssp             CSSCCSCCCSTTTCSC-CCCEEECCSSCCCCC
T ss_pred             cCCCCcccChhhhccc-cccccccCCCcccCC
Confidence            9999986555555544 688999999988754

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.10  E-value=1e-12  Score=130.88  Aligned_cols=125  Identities=22%  Similarity=0.271  Sum_probs=67.9

Q ss_pred             hccCCCcEecCCCCcCCccCCCCcCcccccccccccccccccCCCcccCcCCCCEEEccCCccCCCChhhcccccccccc
Q 002105          441 WEMTSLQMLNLAGNNFSGKLPDSFGSDQLENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDIPEELSSCKKLVSL  520 (966)
Q Consensus       441 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  520 (966)
                      ..+++|++|+|++|+|+. ++.+.++++|++|+|++|+++ .+|..+..+++|+.|++++|+++. + ..+..+++|+.|
T Consensus        45 ~~L~~L~~L~Ls~n~I~~-i~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L  120 (198)
T d1m9la_          45 STLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVNLRVL  120 (198)
T ss_dssp             HHTTTCCEEECSEEEESC-CCCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHHSSEE
T ss_pred             hcccccceeECcccCCCC-cccccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccccccccc
Confidence            334444444444444432 222333344555555555544 233334444556666666666653 2 235666777777


Q ss_pred             ccCCceeccccC-ccCCCCCCCcEEeCCCCcCcccCCcc----------cccCCCCCeee
Q 002105          521 DLSNNQLSGHIP-ASLSEMPVLGQLDLSENQLSGKIPQT----------LGRVASLVQVN  569 (966)
Q Consensus       521 ~Ls~N~l~~~~p-~~l~~l~~L~~LdLs~N~l~g~~p~~----------l~~l~~L~~l~  569 (966)
                      +|++|+++.... ..+..+++|+.|+|++|++....+..          +..+++|+.||
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            777777764322 34667777777777777766544432          45677777776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.09  E-value=1.2e-12  Score=130.28  Aligned_cols=86  Identities=27%  Similarity=0.365  Sum_probs=33.1

Q ss_pred             cccCCcceEEEccCCCCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCC-hhhhcCCCC
Q 002105          200 IGQLRNLKWIYLGYNNLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIP-KSILGLKSL  278 (966)
Q Consensus       200 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L  278 (966)
                      +..+++|++|+|++|.++ .+|..+..+++|++|++++|+++..  +.+.++++|++|++++|+++.... ..+..+++|
T Consensus        66 l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L  142 (198)
T d1m9la_          66 LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL  142 (198)
T ss_dssp             HHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTC
T ss_pred             ccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccccccccccccccchhccccccccccCCCcc
Confidence            333444444444444433 2222222233344444444444321  123344444444444444432111 233444444


Q ss_pred             CEEEccCCcC
Q 002105          279 VSFDLSDNYL  288 (966)
Q Consensus       279 ~~L~Ls~N~l  288 (966)
                      +.|++++|.+
T Consensus       143 ~~L~L~~N~l  152 (198)
T d1m9la_         143 EDLLLAGNPL  152 (198)
T ss_dssp             SEEEECSSHH
T ss_pred             ceeecCCCcc
Confidence            4444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.9e-10  Score=109.26  Aligned_cols=91  Identities=25%  Similarity=0.211  Sum_probs=42.3

Q ss_pred             CcccccCCcceEEEccCC-CCCCCCCcCccCCCCCCEEEeecccccccCCcCCCCCCccceEeccccccCCCCChhhhcC
Q 002105          197 PREIGQLRNLKWIYLGYN-NLSGEIPKEIGDLTSLNHLDLVYNNLTGQIPPSFGNLSNLRYLFLYQNKLTGSIPKSILGL  275 (966)
Q Consensus       197 p~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  275 (966)
                      |..+..+++|++|++++| .++...+.+|.++++|+.|+|++|+|+...|..|..+++|++|+|++|+++...+..|. .
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~  102 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-G  102 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC-S
T ss_pred             cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhc-c
Confidence            333444444444444333 24333333445555555555555555544444455555555555555555432222232 2


Q ss_pred             CCCCEEEccCCcC
Q 002105          276 KSLVSFDLSDNYL  288 (966)
Q Consensus       276 ~~L~~L~Ls~N~l  288 (966)
                      .+|+.|+|++|.+
T Consensus       103 ~~l~~L~L~~Np~  115 (156)
T d2ifga3         103 LSLQELVLSGNPL  115 (156)
T ss_dssp             CCCCEEECCSSCC
T ss_pred             ccccccccCCCcc
Confidence            2455555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.5e-08  Score=93.96  Aligned_cols=100  Identities=22%  Similarity=0.213  Sum_probs=65.7

Q ss_pred             ccccccccccccccCCCcccCcCCCCEEEccCCccCCCC--hhhccccccccccccCCceeccccCccCCCCCCCcEEeC
Q 002105          469 LENLDLSENRFSGTIPRSFGRLSELMQLKISRNKLFGDI--PEELSSCKKLVSLDLSNNQLSGHIPASLSEMPVLGQLDL  546 (966)
Q Consensus       469 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdL  546 (966)
                      +..++..+|... .++..+..+++|++|+|++|+++...  +..+..+++|+.|+|++|.++...+-.+.....|+.|++
T Consensus        44 ~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L  122 (162)
T d1koha1          44 DVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL  122 (162)
T ss_dssp             CCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCC
T ss_pred             hhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeec
Confidence            344444444332 33444556778888888888887543  455677888888888888888544423334456888888


Q ss_pred             CCCcCcccCCcc-------cccCCCCCeee
Q 002105          547 SENQLSGKIPQT-------LGRVASLVQVN  569 (966)
Q Consensus       547 s~N~l~g~~p~~-------l~~l~~L~~l~  569 (966)
                      ++|+++......       +..+++|+.||
T Consensus       123 ~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         123 DGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             TTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             CCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            888887655432       45678888776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.8e-07  Score=88.93  Aligned_cols=84  Identities=26%  Similarity=0.213  Sum_probs=49.9

Q ss_pred             CCCCCCccceEeccccccCCCC--ChhhhcCCCCCEEEccCCcCcccCchhhcCCCCCceecccCCCCCCCCCCC-----
Q 002105          247 SFGNLSNLRYLFLYQNKLTGSI--PKSILGLKSLVSFDLSDNYLSGEIPEEVIQLQNLEILHLFSNNFTGKIPSS-----  319 (966)
Q Consensus       247 ~~~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-----  319 (966)
                      .+.++++|++|+|++|+++...  +..+..+++|+.|+|++|.++...+-.+....+|+.|++++|.+.......     
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            3345667777777777776432  344566777777777777776543333444456777777777766443321     


Q ss_pred             --CCCCCCccEEE
Q 002105          320 --LASMPKLQVLQ  330 (966)
Q Consensus       320 --l~~l~~L~~L~  330 (966)
                        +..+|+|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence              34456666554

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.78  E-value=0.00013  Score=74.26  Aligned_cols=97  Identities=15%  Similarity=0.074  Sum_probs=63.5

Q ss_pred             ccEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEccCCCCHHHHHHcC
Q 002105          696 VSSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYIEGKELSEVLRNL  775 (966)
Q Consensus       696 ~~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L~~~l~~l  775 (966)
                      .+.||++.  .++..+++|+...........+.+|...+..+-.|=-+.++++++..++..++||||++|..+.+....-
T Consensus        27 ~~~v~rv~--~~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~~~l~G~~~~~~~~~~  104 (263)
T d1j7la_          27 PAKVYKLV--GENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYEDE  104 (263)
T ss_dssp             SSEEEEEE--CSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEEHHHHTTTC
T ss_pred             CCcEEEEE--eCCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEEEEeccccccccccccc
Confidence            35699876  4666788888765544445556777766554322333567778888889999999999998886644221


Q ss_pred             CHHHHHHHHHHHHHHHHHHhh
Q 002105          776 SWERRRKVAIGIAKALRFLHF  796 (966)
Q Consensus       776 ~~~~~~~i~~~ia~~l~yLH~  796 (966)
                        ..+.+++.++++.++.||.
T Consensus       105 --~~~~~~~~~l~~~l~~lH~  123 (263)
T d1j7la_         105 --QSPEKIIELYAECIRLFHS  123 (263)
T ss_dssp             --SCHHHHHHHHHHHHHHHHT
T ss_pred             --ccHHHHHHHHHHHHHHHhc
Confidence              1233455566666666663

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.15  E-value=0.00054  Score=69.14  Aligned_cols=68  Identities=10%  Similarity=0.189  Sum_probs=45.0

Q ss_pred             cEEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhc-CCCceeEEeeEEecCCeeEEEEEccCCCCH
Q 002105          697 SSSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLI-MHPNIVRLHGVCRSEKAAYLVYEYIEGKEL  768 (966)
Q Consensus       697 ~~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~-~H~niv~l~g~~~~~~~~~lv~Ey~~~g~L  768 (966)
                      +.||++.. ..+..+++|.-...   ....+..|...+..+- ..-.+.++++++.+++..++||||++|.++
T Consensus        25 ~~v~r~~~-~~~~~~vlK~~~~~---~~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          25 AAVFRLSA-QGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             CEEEEEEC-TTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred             CeEEEEEe-CCCCEEEEEeCCcc---CHhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccc
Confidence            46898875 56667777764322   2234556665554321 223367778888888899999999998665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.00  E-value=0.0001  Score=69.60  Aligned_cols=86  Identities=14%  Similarity=0.163  Sum_probs=49.5

Q ss_pred             cCcCCCCEEEccCCccCC----CChhhccccccccccccCCceecccc----CccCCCCCCCcEEeCCCCcCccc-----
Q 002105          488 GRLSELMQLKISRNKLFG----DIPEELSSCKKLVSLDLSNNQLSGHI----PASLSEMPVLGQLDLSENQLSGK-----  554 (966)
Q Consensus       488 ~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~LdLs~N~l~g~-----  554 (966)
                      ...+.|+.|+|++|.+..    .+...+...+.|+.|+|++|.++..-    -..+..-++|+.|+|++|.+...     
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~  120 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE  120 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHH
Confidence            344556666666666542    22233445566777777777766431    22355556788888877765421     


Q ss_pred             --CCcccccCCCCCeeeCcCC
Q 002105          555 --IPQTLGRVASLVQVNISHN  573 (966)
Q Consensus       555 --~p~~l~~l~~L~~l~ls~N  573 (966)
                        +...+...++|+.|+++.+
T Consensus       121 ~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         121 MDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHhCCCccEeeCcCC
Confidence              2334455667777777544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.86  E-value=0.00017  Score=67.91  Aligned_cols=62  Identities=18%  Similarity=0.018  Sum_probs=30.6

Q ss_pred             CCCCCCEEEeeccccccc----CCcCCCCCCccceEeccccccCCC-------CChhhhcCCCCCEEEccCCc
Q 002105          226 DLTSLNHLDLVYNNLTGQ----IPPSFGNLSNLRYLFLYQNKLTGS-------IPKSILGLKSLVSFDLSDNY  287 (966)
Q Consensus       226 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~-------~p~~l~~l~~L~~L~Ls~N~  287 (966)
                      ..+.|++|+|++|.+...    +-..+...+.|++|++++|.+...       +...+..-++|+.|+++.+.
T Consensus        70 ~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          70 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            344555666666555431    112334445566666666544321       12233445666666665543

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=96.33  E-value=0.0076  Score=64.67  Aligned_cols=76  Identities=13%  Similarity=0.124  Sum_probs=44.3

Q ss_pred             cCCCCCccEEEEEEEecCCcEEEEEEEeccC-------cccccchHHHHHHHHhhcCC--CceeEEeeEEecCCeeEEEE
Q 002105          690 SRGKKGVSSSYKVRSLANDMQFVVKKIIDVN-------TITTSSFWPDVSQFGKLIMH--PNIVRLHGVCRSEKAAYLVY  760 (966)
Q Consensus       690 ~~g~~g~~~vy~~~~~~~~~~vavk~~~~~~-------~~~~~~~~~e~~~~~~~~~H--~niv~l~g~~~~~~~~~lv~  760 (966)
                      .+|.|....||++....+++.++||.-...-       .........|.+.+..+-.+  ..+.+++.+.  ++..++||
T Consensus        33 eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~d--~~~~~lvm  110 (392)
T d2pula1          33 EIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSD--TEMAVTVM  110 (392)
T ss_dssp             ECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEE--TTTTEEEE
T ss_pred             EeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEEc--CCCCEEEE
Confidence            4577777889999876667889999764321       11112234466555443233  3466676654  44567999


Q ss_pred             EccCCCC
Q 002105          761 EYIEGKE  767 (966)
Q Consensus       761 Ey~~~g~  767 (966)
                      ||+++..
T Consensus       111 E~L~~~~  117 (392)
T d2pula1         111 EDLSHLK  117 (392)
T ss_dssp             CCCTTSE
T ss_pred             eccCCcc
Confidence            9998754

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.36  E-value=0.0013  Score=61.61  Aligned_cols=13  Identities=31%  Similarity=0.524  Sum_probs=7.5

Q ss_pred             cCCCCCCEEEcCC
Q 002105           82 FHLPHVESINLSS   94 (966)
Q Consensus        82 ~~l~~L~~L~Ls~   94 (966)
                      .+.+.|++|+|++
T Consensus        14 ~~~~~L~~L~L~~   26 (166)
T d1io0a_          14 NNDPDLEEVNLNN   26 (166)
T ss_dssp             TTCTTCCEEECTT
T ss_pred             hcCCCCcEEEcCC
Confidence            3445666666665

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.35  E-value=0.0011  Score=61.93  Aligned_cols=87  Identities=18%  Similarity=0.262  Sum_probs=50.2

Q ss_pred             cCcCCCCEEEccCCccCCCC----hhhccccccccccccCCceeccc----cCccCCCCCCCcEEeC--CCCcCcc----
Q 002105          488 GRLSELMQLKISRNKLFGDI----PEELSSCKKLVSLDLSNNQLSGH----IPASLSEMPVLGQLDL--SENQLSG----  553 (966)
Q Consensus       488 ~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~LdL--s~N~l~g----  553 (966)
                      ...+.|++|+|++|.+....    -..+...++++.+++++|.+...    +-..+...++|+.++|  ++|.+..    
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence            34556666666666654322    22344566777777777776532    2234555667765444  5666643    


Q ss_pred             cCCcccccCCCCCeeeCcCCc
Q 002105          554 KIPQTLGRVASLVQVNISHNH  574 (966)
Q Consensus       554 ~~p~~l~~l~~L~~l~ls~N~  574 (966)
                      .+...+...+.|+.|+++.+.
T Consensus       123 ~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCCCcCEEeCcCCC
Confidence            233455567788888876554

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=90.29  E-value=0.4  Score=49.08  Aligned_cols=68  Identities=15%  Similarity=0.208  Sum_probs=38.8

Q ss_pred             EEEEEEEecCCcEEEEEEEeccCcccccchHHHHHHHHhhcCC----CceeEEe--eEEecCCeeEEEEEccCCCC
Q 002105          698 SSYKVRSLANDMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMH----PNIVRLH--GVCRSEKAAYLVYEYIEGKE  767 (966)
Q Consensus       698 ~vy~~~~~~~~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H----~niv~l~--g~~~~~~~~~lv~Ey~~~g~  767 (966)
                      .||+++. .+|..+|+|.-... ..+.+++..|...+..+-.+    |..+..-  .....++..+.|++|++|..
T Consensus        37 ~vy~v~~-~dg~~~VlK~~rp~-~~s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G~~  110 (325)
T d1zyla1          37 RVYQFQD-EDRRRFVVKFYRPE-RWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQ  110 (325)
T ss_dssp             EEEEECC-TTCCCEEEEEECTT-TSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCEE
T ss_pred             eeEEEEc-CCCCEEEEEEeCCC-CCCHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCCcC
Confidence            5999986 78888999865432 22334455555444443111    2112221  12234667899999998743

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.18  E-value=0.44  Score=50.22  Aligned_cols=72  Identities=15%  Similarity=0.052  Sum_probs=38.4

Q ss_pred             CCCCCccEEEEEEEecC-------CcEEEEEEEeccCcccccchHHHHHHHHhhcCCCceeEEeeEEecCCeeEEEEEcc
Q 002105          691 RGKKGVSSSYKVRSLAN-------DMQFVVKKIIDVNTITTSSFWPDVSQFGKLIMHPNIVRLHGVCRSEKAAYLVYEYI  763 (966)
Q Consensus       691 ~g~~g~~~vy~~~~~~~-------~~~vavk~~~~~~~~~~~~~~~e~~~~~~~~~H~niv~l~g~~~~~~~~~lv~Ey~  763 (966)
                      .++|-.-.+|++.....       ...|++ |+.... .......+|...+..+-.|.=..++++++..    .+||||+
T Consensus        50 l~GGltN~~y~v~~~~~~~~~~~~~~~vll-Ri~g~~-~~~idr~~E~~i~~~ls~~gl~Pkll~~~~~----g~I~efi  123 (395)
T d1nw1a_          50 IKGGMSNMLFLCRLSEVYPPIRNEPNKVLL-RVYFNP-ETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEEYI  123 (395)
T ss_dssp             ECCCTTEEEEEEEECTTSCCSSSCCSEEEE-EEECSC-CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEECCC
T ss_pred             cCCccccceEEEEeCCCCccccCCCCcEEE-EecCCc-chhhHHHHHHHHHHHHHhCCCCCeEEEEcCC----ceEEEEe
Confidence            34455556898876321       233444 444321 1112234555544443335334578887753    6899999


Q ss_pred             CCCCH
Q 002105          764 EGKEL  768 (966)
Q Consensus       764 ~~g~L  768 (966)
                      +|..+
T Consensus       124 ~g~~l  128 (395)
T d1nw1a_         124 PSRPL  128 (395)
T ss_dssp             CEEEC
T ss_pred             ccccC
Confidence            97544