Citrus Sinensis ID: 002109

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-----
Protein Sequence
MPVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESSPLDDLLGNLGKKETESRVKSEKDVSAFDDLLPGFGRSRSPSSNRSTSESSQSQKPPSNSTKTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSGGVFDDLDSLNILGKSVPPVSPEINKRGNDRSLRSKSVSGTQTHPRKESIDRSSVENFDGYAQNNTPVDNFQGSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSYMSATDSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAPPPSRPPPPRPTRVSKLETGNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFILLCLEGFNLTMQDSFLVYYFGCFTFCCQFDDKLLLHANMNSEKYAIGVSRHRV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccHHHHHHHcccccccccccccccHHHHccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccEEEEEEcccccHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHcHccccccccHHHcccHHHHHHHHHHHEEEEcccHHcccccHHHHHHHHHHHHHHHccHHHHHHHcHEEEccccccccccccEEEEEEcEEEEEccccHHEEEEccccccEEEEEccccc
Coil and Loop (DISEMBL)
mpvydkpvydddvdifkglpglrtsstpaaaasssganfddvfasfsrssakhesaressplddllgnlgkketesrvksekdvsafddllpgfgrsrspssnrstsessqsqkppsnstktassvmedpfgvseststhvgssseVFTDRLEEIGkfggsgsakvngssvsggvfddldslnilgksvppvspeinkrgndrslrsksvsgtqthprkesidrssvenfdgyaqnntpvdnfqgsndtlfnmpsvatdssrsagratsppsymsatdslrsagratsppsymsatdslrsagratsppsytsaspsetnsqvnttpksedlfdsaeDVWLTvseiplftqptsapppsrpppprptrvskletgnarkkaneyssfsnspqcthspkstragtrssaaSQIDELEDFAMSRSWnnvneygevpspedveSSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAArsresvqpdreerATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQnqqkndndlesffsmssrpssaprprantsdslfdsqskggpeparrtsvgassnmrkassttniVDDLSSIFgaagssagefqdvegETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVlwpesgwqpvslTDLITAAAVKKCYRKatlcihpdkvqqKGANLQQKYIAEKVFDLLKVQQIYCRFFILLCLEGFNLTMQDSFLVYYFGCFTFCCQFDDKLLLHANMNSEKYAIGVSRHRV
Flexible Loop (DISEMBL)
mpvydkpvydddVDIFKGLPGLRTSSTpaaaasssgaNFDDVFASFSRSSAkhesaressplddllgnlgkketesrvksekdvsafddllpgfgrsrspssnrstsessqsqkppsnstkTASSVMEDPFGVseststhvgsssEVFTDRLEEIGKFggsgsakvngSSVSGGVFDDLDSLNILgksvppvspeinkrgndrslrsksvsgtqthprkesidrssveNFDGYAQNNTPVDNFQGSNDTLFNMPSVATdssrsagratsppsymsaTDSLRSAGRATSPPSYMSATDSLRSAGRATSPPsytsaspsetnsqvnTTPKSEDLFDSAEDVWLTVSEIPLftqptsapppsrpppprpTRVSKLETGNARKKaneyssfsnspqcthspkstragtrsSAASQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAkemreresfkaarsresvqpdreeratqqdaqerldremqqrekgeeqrrlerererereekerekkriekekerareiekerekarqaveRATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAAranqnqqkndndLESFFSMSsrpssaprprantsdslfdsqskggpeparrtsvgassnmrkassttniVDDLSSIFGAAgssagefqdvegetEERRRARLERHQRTQERAAKalaeknerdlqaqrDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFILLCLEGFNLTMQDSFLVYYFGCFTFCCQFDDKLLLHANMNsekyaigvsrhrv
Low Complexity Region (SEG)
MpvydkpvydddvdIFKGLPGLRTsstpaaaasssgaNFDDVFASFSRSSAKHESARESSPLDDLLGNLGKKETESRVKSEKDVSAFDDLLPGFGRsrspssnrstsessqsqkppsnstkTASSVMEDPFgvseststhvgssseVFTDRLEEIGKFGGSGSAKVNGSSVSGGVFDDLDSLNILGKSVPPVSPEINKRGNDRSLRSKSVSGTQTHPRKESIDRSSVENFDGYAQNNTPVDNFQGSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSYMSATDSLRSAGRatsppsytsaspsETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQptsapppsrpppprptrVSKLETGNARKKANEYSSFSNSPQCTHSPKstragtrssaasQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIaaasaaamkeamdraeakFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDremqqrekgeeqrrlerererereekerekkriekekerareiekerekarqaveratreareraaaearlkaeraavdkanaaareraeraavqraqaeareraaaeareraeraaaeareranaearekeareraSVarteaealqraeraavqraaseareraaaeareraaaaaraNQNQQKNDNDLEsffsmssrpssaprpraNTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLssifgaagssagEFQDVegeteerrrarlerHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFILLCLEGFNLTMQDSFLVYYFGCFTFCCQFDDKLLLHANMNSEKYAIGVSRHRV
Disordered region (IsUnstruct)
********YDDDVDIFK*******************************************************************************************************************************************************************************************************************************************************************************************************************************EDVWLTVSEIPLF*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFILLCLEGFNLTMQDSFLVYYFGCFTFCCQFDDKLLLHANMNSEKYAI*******
Disordered Region (DISOPRED)
MPVYDKPVYDDDVDIFKGL********************DD***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQ*K*ANLQQKYIAEKVFDLLKVQQIYCRFFILLCLEGFNLTMQDSFLVYYFGCFTFCCQFDDKLLLHANMNSEKYAIGVSRH**
Disordered Region (DISEMBL)
MPVYDKPVYDDDVDIFKGLPGLRT***********GANFDDVFASF****************DDLLGNLGK***********DVSAFDDLLPGFGR******************************MEDPFG**************VFTDRLEEIGKFGGSGSAKVNGSSVSGGVFDDLDSLNILGKSVPPVSPEIN***************************SSVENFDGYAQNNTPVDNFQGSNDTLFNMPSV***********************************************************************KSEDLFDSAEDVWLTVSEIPLFTQ******************SKLE************************************SQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSI*****************KFRH******************************************************************************************************************************************************************************************************************************KNDNDLESFFS***********************************************TTNIVDDLSSIFGAAGS**************************************************RHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFILLCLEGFNLTMQDSFLVYYFGCFTFCCQFDDKLLLHANMNSEKYAIGVSRHRV
Disordered Region (DISPRO)
*PVYDKPVYDDDVDIFKGLPGL*******************************************************************************************************VMEDPFGVSEST******************************************************************************************************************************************************************************************************AEDVWLTVSEIPLFTQPTSAPPPSRP*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ERR***L**HQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFILLCLEGFNLTMQDSFLVYYFGCFTFCCQFDDKLLLHANMNSEKYAIGVS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESSPLDDLLGNLGKKETESRVKSEKDVSAFDDLLPGFGRSRSPSSNRSTSESSQSQKPPSNSTKTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSGGVFDDLDSLNILGKSVPPVSPEINKRGNDRSLRSKSVSGTQTHPRKESIDRSSVENFDGYAQNNTPVDNFQGSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSYMSATDSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAPPPSRPPPPRPTRVSKLETGNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASxxxxxxxxxxxxxxxxxxxxxRERESFKAARSRESVQPDREERATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxERAAVQRAASEARERAxxxxxxxxxxxxxxxxxxxxxDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRRARxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFILLCLEGFNLTMQDSFLVYYFGCFTFCCQFDDKLLLHANMNSEKYAIGVSRHRV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	965	2.2.26 [Sep-21-2011]
Q0WQ57	891	Auxilin-related protein 2	yes	no	0.781	0.846	0.464	1e-149
Q9SU08	904	Auxilin-related protein 1	no	no	0.222	0.237	0.762	5e-86
O13773	697	UBA domain-containing pro	yes	no	0.100	0.139	0.408	1e-15
Q99KY4	1305	Cyclin-G-associated kinas	no	no	0.089	0.065	0.416	7e-13
Q8IDX6	3130	Reticulocyte-binding prot	yes	no	0.134	0.041	0.328	1e-09

>sp|Q0WQ57|AUXI2_ARATH Auxilin-related protein 2 OS=Arabidopsis thaliana GN=At4g12770 PE=1 SV=1

 Score =  528 bits (1360), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 426/917 (46%), Positives = 527/917 (57%), Gaps = 163/917 (17%)

Query: 1   MPVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESS 60
           MPVYDKPVYDD+ D+F+ +P L+  ST     SS  A F++VF+S S S  KH   + SS
Sbjct: 111 MPVYDKPVYDDE-DVFESIPELKIPST-----SSQSARFENVFSSISSSPTKHRK-QNSS 163

Query: 61  PLDDLLGN-LGKKETESRVKSEKDVSAFDDLLPGFGRSRSPSSNRSTSES-SQSQKPPSN 118
           P DDL+GN LGKKE++   + EK  S FDDL+PGFGR+ SP + R+TSE+ SQSQKPP  
Sbjct: 164 PFDDLMGNNLGKKESD---REEKGSSIFDDLIPGFGRTSSPPAKRTTSETTSQSQKPPYR 220

Query: 119 STKTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSGGVFDD 178
           + +T+S+V EDPF V E +++ +   S                          +GG  D 
Sbjct: 221 TAETSSNVKEDPFVVLEESTSTLREPS--------------------------TGGFTDP 254

Query: 179 LDSLNILGKSVPPVSPEINKRGNDRSLRSKSVSGTQTHPRKESIDRSSVENFDGYAQNNT 238
           L+ +   GK         N R  D S    SV G                   G   +  
Sbjct: 255 LEEI---GK--------FNSRKTDHS----SVHG-------------------GVFVDTD 280

Query: 239 PVDNFQGSNDTLFNMPSVATDSSRSAGRA-TSPPSYMSATDS-LRSAGRATSPPSYMSAT 296
           P+D+   S   +            S G++   PP  +S + S + S+G   S    +S  
Sbjct: 281 PLDSLGKSGPDM-----------NSRGKSHLRPPGNISGSQSPVESSGLYHS--KNVSFD 327

Query: 297 DSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAP 356
           D +     +T PP+ +  S                 F+S++DVWLTVSEIPLFTQPTSAP
Sbjct: 328 DVVEPQNTSTPPPTNSDGS-----------------FESSDDVWLTVSEIPLFTQPTSAP 370

Query: 357 PPSRPPPPRPTRVSKLETGNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQIDELE 416
           PP+              T   +KK NE  S   S   +H P S RA   S  ASQ+DEL+
Sbjct: 371 PPT-------RPPPPRPTRPIKKKVNE-PSIPTSAYHSHVPSSGRASVNSPTASQMDELD 422

Query: 417 DFAMSRSWNNVNEYGEVPSPEDVES-SIAAASAAAMKEAMDRAEAKFRHAKEMRERESFK 475
           DF++ R+    N Y +  S ED +  S AAASAAAMK+AMD+AEAKFRHAKE RE+ES K
Sbjct: 423 DFSIGRNQTAANGYPDPSSGEDSDVFSTAAASAAAMKDAMDKAEAKFRHAKERREKESLK 482

Query: 476 AARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIE 535
           A+RSRE             D  E  D   ++RE  E+Q RL+RER     E E+ + R  
Sbjct: 483 ASRSREG------------DHTENYDS--RERELREKQVRLDRERAEREAEMEKTQARER 528

Query: 536 KEKERAREIEKEREK---ARQAVERATREARERAAAEARLKAERAAVDKANAAARERAER 592
           +E+ER ++  +   +   ARQAVERATREARE           RAA +     A  + +R
Sbjct: 529 EEREREQKRIERERERLLARQAVERATREARE-----------RAATE-----AHAKVQR 572

Query: 593 AAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRA- 651
           AAV +           +ARERAERAA +       E     ARE+A  A  EA     A 
Sbjct: 573 AAVGKV---------TDARERAERAAVQRAHAEARERAAAGAREKAEKAAAEARERANAE 623

Query: 652 --ERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPR 709
             E+ A +  A  A    AA      AAA    + QQ+N+NDL+SFF+  SRPSS PR R
Sbjct: 624 VREKEA-KVRAERAAVERAAAEARGRAAAQAKAKQQQENNNDLDSFFNSVSRPSSVPRQR 682

Query: 710 ANTSDSLFDSQSKGG----PEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGE 765
            N  D   DS +KGG      P+ R   G + N+RKASS TNIVDDLSSIFGA  S +G 
Sbjct: 683 TNPPDPFQDSWNKGGSFESSRPSSRVPSGPTENLRKASSATNIVDDLSSIFGAPASQSGG 742

Query: 766 FQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKR 825
           FQDV+GETEERRRARLERHQRTQERAAKALAEKNERDLQ QR+QAE+ RI  TLDVEI+R
Sbjct: 743 FQDVDGETEERRRARLERHQRTQERAAKALAEKNERDLQVQREQAEKDRIGGTLDVEIRR 802

Query: 826 WAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKG 885
           W AGKEGN+RALL+T+QYVLWPE GWQPVSLTDLIT A+VKK YRKATLCIHPDKVQQKG
Sbjct: 803 WGAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITGASVKKVYRKATLCIHPDKVQQKG 862

Query: 886 ANLQQKYIAEKVFDLLK 902
           ANLQQKYIAEKVFD+LK
Sbjct: 863 ANLQQKYIAEKVFDMLK 879

Promotes probably uncoating of clathrin-coated vesicles.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SU08|AUXI1_ARATH Auxilin-related protein 1 OS=Arabidopsis thaliana GN=At4g12780 PE=1 SV=2

 Score =  320 bits (819), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 167/219 (76%), Positives = 183/219 (83%), Gaps = 4/219 (1%)

Query: 688 NDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSV----GASSNMRKAS 743
           N NDL+SFFS  SRP+SAPR R N  D   DS +KGG   + R S+    G   N+RK S
Sbjct: 674 NTNDLDSFFSSISRPNSAPRQRTNPLDPFQDSWNKGGSFESSRESLRVPPGQPENLRKTS 733

Query: 744 STTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDL 803
           S TNIVDDLSSIFGA+ S +G FQDV+GETEERRRARLERHQRTQERAAKALAEKNERDL
Sbjct: 734 SVTNIVDDLSSIFGASASQSGGFQDVDGETEERRRARLERHQRTQERAAKALAEKNERDL 793

Query: 804 QAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAA 863
           Q QR+Q E+ RI  TLDVEIKRW AGKEGN+RALL+T+QYVLWPE GWQPVSLTDLITAA
Sbjct: 794 QVQREQVEKDRIGVTLDVEIKRWGAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITAA 853

Query: 864 AVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLK 902
           +VKK YRKATLCIHPDKVQQKGANLQQKYIAEKVFD+LK
Sbjct: 854 SVKKVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDMLK 892

Promotes probably uncoating of clathrin-coated vesicles.

Arabidopsis thaliana (taxid: 3702)

>sp|O13773|UCP7_SCHPO UBA domain-containing protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ucp7 PE=4 SV=1

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 62/98 (63%), Gaps = 1/98 (1%)

Query: 804 QAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAA 863
           +A++   ER R+ E +   + +W  GKE N+RALLA++  +LWPE  WQ VSL++L+   
Sbjct: 588 KAEQLDEERSRLREPVQQIVNKWKEGKESNLRALLASLDTILWPECRWQKVSLSELVLPK 647

Query: 864 AVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLL 901
            VK  Y KA   +HPDK+ Q+ + ++ + IAE  F +L
Sbjct: 648 KVKIAYMKAVSRVHPDKLPQQTS-VEHQLIAESAFSIL 684

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q99KY4|GAK_MOUSE Cyclin-G-associated kinase OS=Mus musculus GN=Gak PE=1 SV=2

 Score = 77.0 bits (188), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 58/96 (60%), Gaps = 10/96 (10%)

Query: 786  RTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVL 845
            ++ ++  K +AE  +++L          R  + L +++  W  GKE NIRALL+T+  VL
Sbjct: 1186 KSDKKGPKTMAEMRKQELA---------RDTDPLKLKLLDWIEGKERNIRALLSTLHTVL 1236

Query: 846  W-PESGWQPVSLTDLITAAAVKKCYRKATLCIHPDK 880
            W  ES W PVS+ DL+T   VKK YR+A L +HPDK
Sbjct: 1237 WDGESRWTPVSMADLVTPEQVKKQYRRAVLVVHPDK 1272

Associates with cyclin G and CDK5. Seems to act as an auxilin homolog that is involved in the uncoating of clathrin-coated vesicles by Hsc70 in non-neuronal cells. Expression oscillates slightly during the cell cycle, peaking at G1.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0198 PE=3 SV=1

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 19/149 (12%)

Query: 476  AARSRESVQPDREERATQQDAQERLDREMQ-QREKGEEQRRLERER----------ERER 524
            A + +E  +  +EE   +Q+ QERL+RE Q Q +K EE +R E+ER          E+ER
Sbjct: 2738 ALKRQEQERLQKEEELKRQE-QERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQER 2796

Query: 525  EEKEREKKRIEK---EKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDK 581
             +KE E KR E+   E+E+  +++KE E  RQ  ER  +E   +   + RL+ E    ++
Sbjct: 2797 LQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKE----EE 2852

Query: 582  ANAAARERAERAAVQRAQAEARERAAAEA 610
                 +ER ER  ++ A+ E   ++  E+
Sbjct: 2853 LKRQEQERLERKKIELAEREQHIKSKLES 2881

Involved in reticulocyte adhesion.

Plasmodium falciparum (isolate 3D7) (taxid: 36329)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	965
225438408	949	PREDICTED: auxilin-related protein 2-lik	0.860	0.874	0.607	0.0
255567186	983	auxilin, putative [Ricinus communis] gi|	0.864	0.848	0.584	0.0
356512862	985	PREDICTED: auxilin-related protein 2-lik	0.830	0.813	0.551	0.0
356527526	935	PREDICTED: auxilin-related protein 2-lik	0.829	0.855	0.549	1e-176
356516393	922	PREDICTED: auxilin-related protein 2-lik	0.841	0.880	0.520	1e-161
147777401	977	hypothetical protein VITISV_018382 [Viti	0.814	0.804	0.539	1e-160
297790814	890	hypothetical protein ARALYDRAFT_497125 [	0.777	0.842	0.479	1e-156
145340151	891	auxilin-related protein 2 [Arabidopsis t	0.781	0.846	0.464	1e-147
334186464	889	auxilin-related protein 2 [Arabidopsis t	0.779	0.845	0.464	1e-145
297790666	920	hypothetical protein ARALYDRAFT_333056 [	0.776	0.814	0.435	1e-139

>gi|225438408|ref|XP_002275766.1| PREDICTED: auxilin-related protein 2-like [Vitis vinifera]

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/926 (60%), Positives = 662/926 (71%), Gaps = 96/926 (10%)

Query: 2   PVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESSP 61
           PVYDKPVYDDD  IF G+PGL+TS +          N+D  F++ S S  K   A     
Sbjct: 83  PVYDKPVYDDD--IFDGVPGLKTSGS---------VNYD-AFSTVSGSKQKQNDA----- 125

Query: 62  LDDLLGNLGKKETE-SRVKSEKDV-SAFDDLLPGFGRSRSPSSNRSTSESSQSQKPPSNS 119
            DDLLG  G+K+ E  R  + +DV S FDDLL GFGR  SP SNR T++ + + K   N+
Sbjct: 126 FDDLLGGFGRKDPEPKRSGNVEDVGSGFDDLLHGFGRI-SPPSNRPTTDINWAPKSTVNA 184

Query: 120 TKTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSS-VSGGVFDD 178
           T+T S+V+EDPF V ESTST   SSS +F+D LEEI K   SGS +V+GSS V GG F+D
Sbjct: 185 TETTSNVIEDPFVVLESTSTPAVSSSVLFSDPLEEISKLSNSGSTRVDGSSAVGGGAFND 244

Query: 179 LDSLNILGKSVPPVSPEINKRGNDRSLRS-KSVSGTQTHPRKESIDRSSVENFDGYAQNN 237
           LD L+ LGKS  P   E+NKRG +RS  S +  S TQT   KE I++SSVE  D ++Q  
Sbjct: 245 LDPLDGLGKSAFPS--EMNKRGKNRSPSSTEPTSETQTFATKEPIEKSSVEGQDSHSQKK 302

Query: 238 TPVDNFQGSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSYMSATD 297
            P +N+  S+ TLF++P+V+TDS +                                   
Sbjct: 303 MPAENYWESHQTLFDIPTVSTDSHK----------------------------------- 327

Query: 298 SLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAPP 357
              S  +  SPPS+ +ASP+ETNSQ   +P+SE+   S++DVWL VS+IPLFTQPTSAPP
Sbjct: 328 ---SFSQTPSPPSHVNASPNETNSQGEMSPRSEENLSSSDDVWLAVSDIPLFTQPTSAPP 384

Query: 358 PSRPPPPRPTRVSKLETG-----NARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQI 412
           PSRPPP RPT+VS+ ETG     NARKK NE+SSF+NS Q + SPK TR   +SSA SQI
Sbjct: 385 PSRPPPTRPTQVSRAETGSFGSNNARKKVNEFSSFTNSSQYSQSPKLTRGTVKSSAVSQI 444

Query: 413 DELEDFAMSRSWNNVNEYGEVPSPEDVES-SIAAASAAAMKEAMDRAEAKFRHAKEMRER 471
           DELEDFAM R+ NNV+ + E    ++ E+ S+AAASAAAMKEAMDRAEAKFRHAK +RER
Sbjct: 445 DELEDFAMGRTQNNVDGHAEGLYGDEFETNSVAAASAAAMKEAMDRAEAKFRHAKGVRER 504

Query: 472 ESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREK 531
           ES KA+RS+E+ Q DR+E+A  QDAQER  RE Q+R + E Q R   E ERE+   ER +
Sbjct: 505 ESAKASRSKEAGQLDRDEKA-MQDAQERAIREKQERLEHERQEREREEEEREQRRLERTR 563

Query: 532 KRIEKEKERAREIEKEREKAR-------------QAVERATREARERAAAEARLKAERAA 578
           +   + +E+ RE  +  ++               QAVERAT+EARERAAAEARLKAERAA
Sbjct: 564 EIEREREEKEREQRRLEKERERAREIEREREKARQAVERATKEARERAAAEARLKAERAA 623

Query: 579 VDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERA 638
           V K NA ARERAERAAV RAQAEARERAAAEA+ERAE+AAAEARERAN EAREKEARERA
Sbjct: 624 VGKVNAEARERAERAAVHRAQAEARERAAAEAKERAEKAAAEARERANTEAREKEARERA 683

Query: 639 SVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSM 698
           +VAR EAE   R          +E      A A  R  AAA A  NQQKN+NDLESFFSM
Sbjct: 684 AVARAEAEVRLR----------TERAAVERAAAEARERAAAAARVNQQKNENDLESFFSM 733

Query: 699 SSRPSSAPRPRANTSDSLFDSQSKG--GPEPARRTSVGASSNMRKASSTTNIVDDLSSIF 756
            SRPSSAPRPRAN+SD +FD+Q +   GPE AR T+  ASS MRKASSTTNIVDDLSSIF
Sbjct: 734 GSRPSSAPRPRANSSDPVFDTQFQNRRGPEVAR-TAASASSTMRKASSTTNIVDDLSSIF 792

Query: 757 GAAGSSAGEFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIA 816
           GAA SS G+FQDVEGE+E+RRRARLERHQRTQERAAKALAEKN+RDLQAQRDQAERHRIA
Sbjct: 793 GAAPSS-GDFQDVEGESEDRRRARLERHQRTQERAAKALAEKNQRDLQAQRDQAERHRIA 851

Query: 817 ETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCI 876
           ETLDVEIKRW+AGKEGN+RALL+T+QYVLWPE GWQPVSLTDLITAA+VKK YRKATLCI
Sbjct: 852 ETLDVEIKRWSAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITAASVKKVYRKATLCI 911

Query: 877 HPDKVQQKGANLQQKYIAEKVFDLLK 902
           HPDKVQQKGANLQQKYIAEKVFDLLK
Sbjct: 912 HPDKVQQKGANLQQKYIAEKVFDLLK 937

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567186|ref|XP_002524574.1| auxilin, putative [Ricinus communis] gi|223536127|gb|EEF37782.1| auxilin, putative [Ricinus communis]

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/937 (58%), Positives = 663/937 (70%), Gaps = 103/937 (10%)

Query: 1   MPVYDKPVYDDDVDIFKGLPGLR-TSSTPAAAASSSGANFDDVFASFSRSSAKHESARES 59
           +PV+DKPVYDDD DIF GLPGL+ TS TP      + +NFDDVF S   ++    S  ++
Sbjct: 103 LPVFDKPVYDDDDDIFDGLPGLKSTSVTP------NSSNFDDVFGSIGTTTTTATSPPKT 156

Query: 60  ----------SPLDDLLGNLGKKETESRVKS----EKDVSAFDDLLPGFGRSRSPSSNRS 105
                     SP DDLLGN GK ETES+ ++    EKD + FDDLLPGFGRS SPS  RS
Sbjct: 157 RSLNNNTSSSSPFDDLLGNFGKLETESKRETTPEVEKDSAMFDDLLPGFGRSSSPSIARS 216

Query: 106 TSESSQSQKPPSNSTKTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAK 165
           TSES+++QK  +NS KTAS++MEDPF + +STST   SSS ++TD L+EI KF  +GS K
Sbjct: 217 TSESTRAQKSSTNSVKTASNMMEDPFVILQSTSTPAASSSGLYTDPLDEISKFRSTGSTK 276

Query: 166 VNGSSVSGGVFDDLDSLNILGKSVPPVSPEINKRGNDRS-LRSK-SVSGTQTHPRKESID 223
           V+ SSV+ G+FDD+DS + LGKSVPPVS  INKRG DRS LR+  S  G  +    ES+D
Sbjct: 277 VDSSSVNRGIFDDIDSFDNLGKSVPPVSSGINKRGKDRSPLRTGPSTGGNFSAASNESVD 336

Query: 224 RSSVENFDGYAQNNTPVDNFQGSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSA 283
           +  V+     +Q     D+FQ  ++TLF+MP+  TD  RS                    
Sbjct: 337 KYPVDEAAAPSQKKMSNDDFQEYHETLFDMPNATTDFHRSV------------------- 377

Query: 284 GRATSPPSYMSATDSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTV 343
                              G+  S PSY +ASP+ETNS     P+ ED+ +S+ D+WLTV
Sbjct: 378 -------------------GQNVSSPSYVNASPNETNS----PPRYEDISESSNDIWLTV 414

Query: 344 SEIPLFTQPTSAPPPSRPPPPRPTRVSKLETG-----NARKKANEYSSFSNSPQCTHSPK 398
           SE+PLFT PTSAPPPSRPPPPRP R+SK +TG     N+RKK NEYS FSNS   + SP+
Sbjct: 415 SEVPLFTAPTSAPPPSRPPPPRPPRISKTDTGSFSSTNSRKKVNEYS-FSNSASYSQSPR 473

Query: 399 STRAGTRSSAASQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAA--MKEAMD 456
           S RAG RS   +QI+ELEDFAM R+  N +E+ +V   ED++++ ++A+A+A  MKEAMD
Sbjct: 474 SARAG-RSMVPTQIEELEDFAMGRTPTNASEHADVVYGEDMDANASSAAASAAAMKEAMD 532

Query: 457 RAEAKFRHAKE------MRERESFKAARSRESVQP----DREERATQQDAQERLDREMQQ 506
           +AEAKF+  +E       R RE  +  +  +  QP    +R+ER  ++  Q   + + ++
Sbjct: 533 KAEAKFKQMREREYLKAARSREGGQLDKDMQEAQPRELRERQERLDRERLQREREEQERE 592

Query: 507 REKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERA 566
           + + E++R    E EREREEKERE++R+E+E+ERAREIE+EREKARQAVERATREARERA
Sbjct: 593 QRRLEKERERAHEIEREREEKEREQRRLERERERAREIEREREKARQAVERATREARERA 652

Query: 567 AAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERAN 626
           AA+ARLKAERAAV+KA+A ARERAERAAVQRAQAEARERAAAEARERAERAAAEARERAN
Sbjct: 653 AADARLKAERAAVEKASAEARERAERAAVQRAQAEARERAAAEARERAERAAAEARERAN 712

Query: 627 AEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQ 686
            E+RE+ A  RA     +                        A A  R  AAA A  NQQ
Sbjct: 713 TESRERAAVARAEADARQRAE---------------RAAVERAAAEARERAAAAARANQQ 757

Query: 687 KNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTT 746
           KN+ND ESFF+   R SSAPRPR NTS+  FD+Q+KGG E ARRTSVG + NM+KASSTT
Sbjct: 758 KNENDFESFFN--PRASSAPRPR-NTSEPFFDTQTKGGSEAARRTSVGTTPNMKKASSTT 814

Query: 747 NIVDDLSSIFGA-AGSSAGEFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQA 805
           NIVDDLSSIFG  A  ++G+FQ+VEGETEERRRARLERHQRTQERAAKALAEKN+RDLQA
Sbjct: 815 NIVDDLSSIFGGTATGTSGDFQEVEGETEERRRARLERHQRTQERAAKALAEKNQRDLQA 874

Query: 806 QRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAV 865
           QR+QAERHRIAETLDVEIKRWAAGKEGN+RALL+T+QYVLWPE GWQPVSLTDLIT AAV
Sbjct: 875 QREQAERHRIAETLDVEIKRWAAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITGAAV 934

Query: 866 KKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLK 902
           KK YRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLK
Sbjct: 935 KKVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLK 971

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512862|ref|XP_003525134.1| PREDICTED: auxilin-related protein 2-like [Glycine max]

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/919 (55%), Positives = 608/919 (66%), Gaps = 118/919 (12%)

Query: 2   PVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESSP 61
           PVYDKPVYDDD  IF G+PGL+         S+S   FDDVFA+ +      ES   ++ 
Sbjct: 155 PVYDKPVYDDD--IFDGVPGLK---------STSKVKFDDVFATTA------ESGGGAAA 197

Query: 62  LDDLLGNLGKK----ETESRVKSEKDVSAFDDLLPGFGRSRSPSSNRSTSESSQSQKPPS 117
            DDLLG  GK+    + +   K EK VS FDDLL GFG SRS S  R T +   S +P +
Sbjct: 198 FDDLLGGFGKESKSLDGKRSEKDEKGVSDFDDLLAGFGHSRSSSGGRHTPDIGLSSEPTA 257

Query: 118 NSTKTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSGG-VF 176
           +++KT  +  EDPF V ES S  V SS+  F + LEEI KF  SGS K + SS S G V+
Sbjct: 258 SASKTIPTAAEDPFKVFESASAPVDSSAGHFMNPLEEISKFSSSGSTKNDSSSTSNGKVY 317

Query: 177 DDLDSLNILGKSVPPVSPEINKRGNDRSLR---SKSVSGTQTHPRKESIDRSSVENFDGY 233
           +D+D  + LGKSVP  S E N R    S R   S S +G      KE +D+ S  + + +
Sbjct: 318 EDIDPFDGLGKSVPAFSSERNSRKGSSSPRLNTSTSWTGD-----KEPVDKISGRSPERH 372

Query: 234 AQNNTPVDNFQGSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSYM 293
            QN  PV+N Q      F+MP+ ++DS +  G+                           
Sbjct: 373 TQNKIPVENDQEFLHAPFHMPTYSSDSDKPVGQ--------------------------- 405

Query: 294 SATDSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPT 353
                     R+TSPP Y +    +TN Q + +PK ED  +++ED+WLTVSEIPLFTQPT
Sbjct: 406 ----------RSTSPP-YNNVDFRQTNIQADMSPKYEDNLEASEDIWLTVSEIPLFTQPT 454

Query: 354 SAPPPSRPPPPRPTRVSKLETG-----NARKKANEYSSFSNSPQCTHSPKSTRAGTRSSA 408
           +APPPSRPPPPRP  + K  T      NARKK NE+SSF  S + +  PKS  A  R S 
Sbjct: 455 TAPPPSRPPPPRPVHIPKSGTTSPASTNARKKTNEFSSFPGSTRFSQGPKSAPAAGRVSP 514

Query: 409 ASQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEM 468
           +SQ DEL+DFAM RS  N NE       E++E + AAA   AMKEAMDRAEAKFRHAKE+
Sbjct: 515 SSQFDELDDFAMGRSRGNDNESANGLPDEELEMNSAAA---AMKEAMDRAEAKFRHAKEV 571

Query: 469 RERESFKAARSRESVQPDREERAT--QQDAQERLDREMQQREK-GEEQRRLERERERERE 525
           RERE  KAARS+E+VQ +++ER    +Q+ QER DRE QQ+EK G+EQRRL         
Sbjct: 572 REREYSKAARSKEAVQMEKDERTVLEEQENQERFDRERQQKEKEGKEQRRL--------- 622

Query: 526 EKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAA 585
                    E+E++   +   ERE+ARQAVERATREARERAAAEAR +AERAAV+KANA 
Sbjct: 623 -------MKEREEKEREQQRLERERARQAVERATREARERAAAEARQRAERAAVEKANAE 675

Query: 586 ARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEA 645
           AR RAERAAVQRAQAEARERAAAEA+ERAE+AAAE ++R        E RERA+ AR E 
Sbjct: 676 ARGRAERAAVQRAQAEARERAAAEAKERAEKAAAEVKDR--------ETRERATAARAEV 727

Query: 646 EALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSA 705
           EA          R  +E      A A  R  AAA A  NQQKN+NDLESFF M +R SS 
Sbjct: 728 EA----------RVKAERAAVERAAAEARERAAAAARMNQQKNENDLESFFGMGARASSV 777

Query: 706 PRP-RANTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGA-AGSSA 763
           PRP RAN+SD++F+SQ +       R S  AS++M+K SS+TNIVDDLSSIFG  A  ++
Sbjct: 778 PRPPRANSSDNVFESQFQSD---VTRKSTSASTSMKKTSSSTNIVDDLSSIFGGSAAPTS 834

Query: 764 GEFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEI 823
           GEFQ+VEGETEERRRARLERHQRT+ERAAKALAEKN+RDLQ QR+QAERHR+AETLD EI
Sbjct: 835 GEFQEVEGETEERRRARLERHQRTKERAAKALAEKNQRDLQTQREQAERHRLAETLDFEI 894

Query: 824 KRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQ 883
           KRWAAGKEGN+RALL+T+QYVLWPE GWQPVSLTDLITAAAVKK YRKATLCIHPDKVQQ
Sbjct: 895 KRWAAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITAAAVKKAYRKATLCIHPDKVQQ 954

Query: 884 KGANLQQKYIAEKVFDLLK 902
           KGANLQQKY+AEKVFDLLK
Sbjct: 955 KGANLQQKYVAEKVFDLLK 973

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527526|ref|XP_003532360.1| PREDICTED: auxilin-related protein 2-like [Glycine max]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 505/919 (54%), Positives = 605/919 (65%), Gaps = 119/919 (12%)

Query: 2   PVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESSP 61
           PVYDKPVYDDD  IF G+PGL+         S+S   FDDVFA+ +      ES R ++ 
Sbjct: 106 PVYDKPVYDDD--IFDGVPGLK---------STSKVKFDDVFATTT------ESGRGAA- 147

Query: 62  LDDLLGNLGKKETESRVK-SEKD---VSAFDDLLPGFGRSRSPSSNRSTSESSQSQKPPS 117
            DDLLG  GK+   S  K SEKD   VS  DDLL GFG SRS S  R T +   S +P +
Sbjct: 148 FDDLLGGFGKESKSSDGKRSEKDGKGVSDLDDLLAGFGHSRSSSGGRHTPDIGLSSEPTA 207

Query: 118 NSTKTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSGG-VF 176
           +++KT  +  EDPF V ES S  V SS+  F D LEEI KF  S S K + SS S G V+
Sbjct: 208 SASKTTPTSAEDPFKVFESASAPVDSSAGHFMDPLEEISKFSSSRSTKNDSSSTSNGKVY 267

Query: 177 DDLDSLNILGKSVPPVSPEINKRGNDRSLR---SKSVSGTQTHPRKESIDRSSVENFDGY 233
           +D+D  + LGKS P  S E N R    S R   S S +G      KE +D+ S  + + +
Sbjct: 268 EDIDPFDGLGKSAPAFSSERNSRKGSSSPRLNTSTSWTGD-----KEPVDKISGRSPERH 322

Query: 234 AQNNTPVDNFQGSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSYM 293
            QN  PV+N +      F+MP+ ++DS +  G                            
Sbjct: 323 TQNKIPVENDREFPHVPFHMPTYSSDSDKPVGP--------------------------- 355

Query: 294 SATDSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPT 353
                     R TSPP Y +    +TN Q + +PK ED  + +ED+WLTVSEIPLFTQPT
Sbjct: 356 ----------RPTSPP-YDNVDFRQTNVQADMSPKYEDNLEPSEDIWLTVSEIPLFTQPT 404

Query: 354 SAPPPSRPPPPRPTRVSKLET-----GNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSA 408
           +APPPSRPPPPRP  + K  T      NARKK NE+SSF  S +    PKS  A  R   
Sbjct: 405 TAPPPSRPPPPRPVHIPKSGTSSPASANARKKTNEFSSFPGSTRFAQGPKSAPAAERVPP 464

Query: 409 ASQIDELEDFAMSRSWNNVNE--YGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAK 466
           +SQ DEL+DFAM RS  N NE   G +P  E++E + AAA   AMKEAMDRAEAKFRHAK
Sbjct: 465 SSQFDELDDFAMGRSRGNDNESANGFLPD-EELEMNSAAA---AMKEAMDRAEAKFRHAK 520

Query: 467 EMRERESFKAARSRESVQPDREERAT--QQDAQERLDREMQQREKGEEQRRLERERERER 524
           E+RERE  KAARS+E+VQ +++ER    +++ QERLDRE QQ+E               R
Sbjct: 521 EVREREYSKAARSKEAVQMEKDERTVLEERENQERLDRERQQKE---------------R 565

Query: 525 EEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANA 584
           EEKE+ +   E+E++   +   ERE+ARQAVERATREARERAAAEAR +AERAAV+K NA
Sbjct: 566 EEKEQRRLMKEREEKEREQQRLERERARQAVERATREARERAAAEARQRAERAAVEKVNA 625

Query: 585 AARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTE 644
            AR RAERAAVQRAQAEARERAAAEA+ERAE+AAAEA+ER   E       E  +  +  
Sbjct: 626 EARGRAERAAVQRAQAEARERAAAEAKERAEKAAAEAKERETRERATAARAEAEARVK-- 683

Query: 645 AEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSS 704
                 AERA+V+RAA+EAR            AAA A  NQQKN+NDLESFF M +R SS
Sbjct: 684 ------AERASVERAAAEAR----------ERAAAAARMNQQKNENDLESFFGMGARASS 727

Query: 705 APRP-RANTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSA 763
            PRP RAN+SD++F+SQ +       R S  AS++M+KASS+TNIVDDLSSIFG    ++
Sbjct: 728 VPRPPRANSSDNVFESQFQSD---VTRKSTSASTSMKKASSSTNIVDDLSSIFGGTAPTS 784

Query: 764 GEFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEI 823
           GEFQ+VEGETEERRRARLERH RT+ERAAKALAEKN+RDLQ QR+QAERHR+AETLD EI
Sbjct: 785 GEFQEVEGETEERRRARLERHHRTKERAAKALAEKNQRDLQTQREQAERHRLAETLDFEI 844

Query: 824 KRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQ 883
           KRWAAGKEGN+RALL+T+QYVLWPE GWQPVSLTDLITAAAVKK YRKATLCIHPDKVQQ
Sbjct: 845 KRWAAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITAAAVKKAYRKATLCIHPDKVQQ 904

Query: 884 KGANLQQKYIAEKVFDLLK 902
           KGANLQQKY+AEKVFDLLK
Sbjct: 905 KGANLQQKYVAEKVFDLLK 923

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516393|ref|XP_003526879.1| PREDICTED: auxilin-related protein 2-like [Glycine max]

 Score =  577 bits (1486), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 474/910 (52%), Positives = 590/910 (64%), Gaps = 98/910 (10%)

Query: 2   PVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESSP 61
           PV+DKPVYD+D  IF G+PGL+         SSS   +DDV                ++ 
Sbjct: 90  PVFDKPVYDED--IFDGVPGLK---------SSSKVFYDDV---------FASGGSAAAA 129

Query: 62  LDDLLGNLGKKETESRVKSEKDVSAFDDLLPGFGRSRS-PSSNRSTSESSQSQKPPSNST 120
            DDLL  LGK E   +V  EK    FDDL+ GFG S++  S++R+  + + S++P  N++
Sbjct: 130 FDDLLVGLGKSEKSEKV--EKGARDFDDLISGFGSSKAKASTDRTVPDINLSREPTINAS 187

Query: 121 KTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSGGVFDDLD 180
           KTASS   DPF V ESTS  + SSS+ FTD LEEI KF  S S K + SS S  V++D+D
Sbjct: 188 KTASSAANDPFKVFESTSAPIDSSSDYFTDPLEEISKFTSSRSTKNDSSSNSNEVYNDID 247

Query: 181 SLNILGKSVPPVSPEINKRGNDRSLRSKSVSGTQTHPRKESIDRSSVENFDGYAQNNTPV 240
               LG SVP  S E N      S   +S + +     KES D+SSV + +   QN  PV
Sbjct: 248 PFGGLGNSVPAFSAERNSMKGSNSPTPRSNTSSSWTGDKESNDKSSVRSPERQKQNKIPV 307

Query: 241 DNFQGSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSYMSATDSLR 300
           D+ Q      F+MP  ++DS +   +                                  
Sbjct: 308 DHDQEFLQAAFDMPIYSSDSYKPVDQ---------------------------------- 333

Query: 301 SAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAPPPSR 360
              R+TSP SY +    + + Q + +PK E+  +S +D+WL VSEIPLFTQPT+APPPSR
Sbjct: 334 ---RSTSP-SYDNNGFRQASIQEDMSPKYEEKLESNDDIWLMVSEIPLFTQPTAAPPPSR 389

Query: 361 PPPPRPTRVSKLETG-----NARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQIDEL 415
           PPPPRP  + K   G     N RKK NE+S F +S Q +   +S  A  + S+ASQ DEL
Sbjct: 390 PPPPRPVHIPKSGAGSSASANVRKKDNEFSYFPSSSQFSQGSESAPAAAKLSSASQFDEL 449

Query: 416 EDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFK 475
           EDFAM +S +N +E     + E++E + AAA   AMKEAMDRAEAKFRHAK +RERE+ K
Sbjct: 450 EDFAMGKSHDNDDERINGLADEELEMNSAAA---AMKEAMDRAEAKFRHAKGVRERENTK 506

Query: 476 AARSRESVQPDREERATQQD--AQERLDREMQQREKGEEQRRLEREREREREEKEREKKR 533
           A++S+E VQ +++ RA  +D   QERLD E QQ+E+             E +E+ R +K 
Sbjct: 507 ASKSKEPVQLEKDGRAVSEDRGKQERLDHERQQKER-------------EEKEQRRREKE 553

Query: 534 IEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERA 593
            E+++   + +E+EREKARQAVERATREARERAA EAR +AERAAV+KAN  AR+RAERA
Sbjct: 554 REEKEREQQRLEREREKARQAVERATREARERAAVEARRRAERAAVEKANTEARKRAERA 613

Query: 594 AVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAER 653
           AVQRAQAEARERAA EA+ERAE+A+AEA+ER   E       E  +  + E  A      
Sbjct: 614 AVQRAQAEARERAATEAKERAEKASAEAKEREVRERAAAARAEPEARVKAERAA------ 667

Query: 654 AAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTS 713
                  + A  R  A A+ R  AAA A  +QQ+NDNDLESFFS  +R +SAPRP  ++S
Sbjct: 668 ----VERAAAEARERAAAQARERAAAAARMSQQQNDNDLESFFSTGARANSAPRPPRSSS 723

Query: 714 DS-LFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGE 772
              +FD+Q +       R S G SS+M+KASS+TNIVDDLSSIFGAA SS+GEFQ++EGE
Sbjct: 724 SDSVFDAQFQSD---LTRKSTGVSSSMKKASSSTNIVDDLSSIFGAAPSSSGEFQEIEGE 780

Query: 773 TEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEG 832
           TEERRRARLERHQRTQERAAKALAEKN+RDLQ QRDQAERHR+AETLD EIKRWAAGKEG
Sbjct: 781 TEERRRARLERHQRTQERAAKALAEKNQRDLQTQRDQAERHRVAETLDFEIKRWAAGKEG 840

Query: 833 NIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKY 892
           N+RALL+T+QYVLWPE GWQPVSLTDLITAAAV+K YRKATLC HPDKVQQKGA +QQKY
Sbjct: 841 NLRALLSTLQYVLWPECGWQPVSLTDLITAAAVRKVYRKATLCTHPDKVQQKGATIQQKY 900

Query: 893 IAEKVFDLLK 902
           IAEKVFDLLK
Sbjct: 901 IAEKVFDLLK 910

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777401|emb|CAN64950.1| hypothetical protein VITISV_018382 [Vitis vinifera]

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 497/922 (53%), Positives = 598/922 (64%), Gaps = 136/922 (14%)

Query: 2   PVYDKPVYDDDVDIFKGLPGLRTS--------STPAAAASSSGANFDDVFASFSRSSAKH 53
           PVYDKPVYDDD  IF G+PGL+TS        ST + +       FDD+   F R   + 
Sbjct: 83  PVYDKPVYDDD--IFDGVPGLKTSGSVNYDAFSTVSGSKQKQNDAFDDLLGGFGRKDPEP 140

Query: 54  ESARE----SSPLDDLLGNLGK------------------------------KETESR-- 77
           + +       S  DDLL   G+                              K  E R  
Sbjct: 141 KRSGNVEDVGSGFDDLLHGFGRISPPSFCLNLDTTSIKLLVLKSDLSLLLVVKNEEKRKV 200

Query: 78  VKSEKDVSAFD-----------DLLPGFGRSRSPSSNRSTSESSQSQKPPSNSTKTASSV 126
           +KS      FD            L+   G   S    R T++ + + K   N+T+T S+V
Sbjct: 201 IKSLFHPQKFDLVCLQETKVEAMLMALVG---SIGVGRPTTDINWAPKSTVNATETTSNV 257

Query: 127 MEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSG-GVFDDLDSLNIL 185
           +EDPF V ESTST   SSS +F+D LEEI K   SGS +V+GSS  G G F+DLD L+ L
Sbjct: 258 IEDPFVVLESTSTPAVSSSVLFSDPLEEISKLSNSGSTRVDGSSAVGXGAFNDLDPLDGL 317

Query: 186 GKSVPPVSPEINKRGNDRSLRS-KSVSGTQTHPRKESIDRSSVENFDGYAQNNTPVDNFQ 244
           GKS  P   E+NKRG +RS  S +  S TQT   KE I++SSVE  D ++Q   P +N+ 
Sbjct: 318 GKSAFP--SEMNKRGKNRSPSSTEPTSETQTFATKEPIEKSSVEGQDSHSQKKMPAENYW 375

Query: 245 GSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSYMSATDSLRSAGR 304
            S+ TLF++P+V+TDS +                                      S  +
Sbjct: 376 ESHQTLFDIPTVSTDSHK--------------------------------------SFSQ 397

Query: 305 ATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAPPPSRPPPP 364
             SPPS+ +ASP+ETNSQ   +P+SE+   S++DVWL VS+IPLFTQPTSAPPPSRPPP 
Sbjct: 398 TPSPPSHVNASPNETNSQGEMSPRSEENLSSSDDVWLXVSDIPLFTQPTSAPPPSRPPPT 457

Query: 365 RPTRVSKLETG-----NARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQIDELEDFA 419
           RPT+VS+ ETG     NARKK NE+SSF+NS Q + SPK TR   +SSA SQIDELEDFA
Sbjct: 458 RPTQVSRAETGSFGSNNARKKVNEFSSFTNSSQYSQSPKLTRGTVKSSAVSQIDELEDFA 517

Query: 420 MSRSWNNVNEYGEVPSPEDVES-SIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAAR 478
           M R+ NNV+ + E    ++ E+ S+AAASAAAMKEAMDRAEAKFRHAK +RERES KA+R
Sbjct: 518 MGRTQNNVDGHAEGLYGDEFETNSVAAASAAAMKEAMDRAEAKFRHAKGVRERESAKASR 577

Query: 479 SRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEK 538
           S+E+ Q DR+E+A  QDAQER  RE Q+R + E Q R   E ERE+   ER ++   + +
Sbjct: 578 SKEAGQLDRDEKA-MQDAQERAIREKQERLEHERQEREREEEEREQRRLERTREIERERE 636

Query: 539 ERAREIEKEREKAR-------------QAVERATREARERAAAEARLKAERAAVDKANAA 585
           E+ RE  +  ++               QAVERAT+EARERAAAEARLKAERAAV K NA 
Sbjct: 637 EKEREQRRLEKERERAREIEREREKARQAVERATKEARERAAAEARLKAERAAVGKVNAE 696

Query: 586 ARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEA 645
           ARERAERAAV RAQAEARERAAAEA+ERAE+AAAEARERAN EAREKEARERA+VAR EA
Sbjct: 697 ARERAERAAVHRAQAEARERAAAEAKERAEKAAAEARERANTEAREKEARERAAVARAEA 756

Query: 646 EALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSA 705
           E   R          +E      A A  R  AAA A  NQQKN+NDLESFFSM SRPSSA
Sbjct: 757 EVRLR----------TERAAVERAAAEARERAAAAARVNQQKNENDLESFFSMGSRPSSA 806

Query: 706 PRPRANTSDSLFDSQSKG--GPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSA 763
           PRPRAN+SD +FD+Q +   GPE A RT+  ASS MRKASSTTNIVDDLSSIFGAA SS 
Sbjct: 807 PRPRANSSDPVFDTQFQNRRGPEVA-RTAASASSXMRKASSTTNIVDDLSSIFGAAPSS- 864

Query: 764 GEFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEI 823
           G+FQDVEGE+E+RRRARLERHQRTQERAAKALAEKN+RDLQAQRDQAERHRIAETLDVEI
Sbjct: 865 GDFQDVEGESEDRRRARLERHQRTQERAAKALAEKNQRDLQAQRDQAERHRIAETLDVEI 924

Query: 824 KRWAAGKEGNIRALLATMQYVL 845
           KRW+AGKEGN+RALL+T+QY++
Sbjct: 925 KRWSAGKEGNLRALLSTLQYLM 946

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790814|ref|XP_002863292.1| hypothetical protein ARALYDRAFT_497125 [Arabidopsis lyrata subsp. lyrata] gi|297309126|gb|EFH39551.1| hypothetical protein ARALYDRAFT_497125 [Arabidopsis lyrata subsp. lyrata]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 441/919 (47%), Positives = 534/919 (58%), Gaps = 169/919 (18%)

Query: 1   MPVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESS 60
           MPVYDKPVYDD+ D+F+ +P L+  ST     SS  A FDDVF+S      KH   + SS
Sbjct: 112 MPVYDKPVYDDE-DVFESIPELKIPST-----SSQSARFDDVFSS----PPKHRK-QNSS 160

Query: 61  PLDDLLGN-LGKKETESRVKSEKDVSAFDDLLPGFGRSRSPSSNRSTSES-SQSQKPPSN 118
           P DDL+GN LGK+ TES  + EK  S FDDL+PGFGR+ SP   R+TSE+ SQSQKPP  
Sbjct: 161 PFDDLMGNNLGKRGTESD-REEKASSIFDDLIPGFGRTSSPPPKRTTSETTSQSQKPPYR 219

Query: 119 STKTASSVMEDPFGV-SESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSGGVFD 177
           + +T+S+V EDPF V  ES S+    S+  FTD LE+IGKF    +++   SSV  GVF 
Sbjct: 220 TAETSSNVEEDPFVVLEESASSPREPSTGGFTDPLEDIGKF----NSRKTDSSVHEGVFV 275

Query: 178 DLDSLNILGKSVPPVSPEINKRGNDRSLRSKSVSGTQTHPRKESIDRSSVENFDGYAQNN 237
           D D LN            + K G D + R K            SI R             
Sbjct: 276 DTDPLN-----------SLGKPGPDMNSRGK------------SILR------------- 299

Query: 238 TPVDNFQGSNDTLFNMPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSY----M 293
            P  N  GS                      SPP                SP SY    +
Sbjct: 300 -PPGNISGSQ---------------------SPP--------------VESPGSYRSKKV 323

Query: 294 SATDSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPT 353
           S  D L     +  PP+ ++ S                 F+S++DVWLTVSEIPLFTQPT
Sbjct: 324 SFDDVLEPQNTSAPPPTSSNGS-----------------FESSDDVWLTVSEIPLFTQPT 366

Query: 354 SAPPPSRPPPPRPTRVSKLETGNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQID 413
           SAPPP+              T   +K+ NE  S   S   +H P + RA   S  ASQ+D
Sbjct: 367 SAPPPT-------RPPPPRPTRPIKKRVNE-PSIPTSTNHSHVPSTARASVNSPTASQMD 418

Query: 414 ELEDFAMSRSWNNVNEYGEVPSPEDVES-SIAAASAAAMKEAMDRAEAKFRHAKEMRERE 472
           EL+DF++ R+    N Y + PS ED +  S AAASAAAMK+AMD+AEAKFRHAKE R +E
Sbjct: 419 ELDDFSIGRNQTAANGYPDPPSGEDSDIFSAAAASAAAMKDAMDKAEAKFRHAKERRVKE 478

Query: 473 SFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERER-EREREEKEREK 531
           + KA+R+RE      E++    D++ER        E  E Q RL+RER ERE E  + ++
Sbjct: 479 NLKASRNRE------EDQTENYDSRER--------ELRENQVRLDRERAEREAEMVKEQE 524

Query: 532 KRIEKEKERAREIEKEREK--ARQAVERATREARERAAAEARLKAERAAVDKANAAARER 589
           +  E+ +   + IE+ERE+  ARQAVERATREARERAA E                A  +
Sbjct: 525 REREEREREQKRIERERERLLARQAVERATREARERAATE----------------AHAK 568

Query: 590 AERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQ 649
            +RAAV +A          +ARERAERAA +       E     ARE+A+ A  EA    
Sbjct: 569 VQRAAVGKA---------TDARERAERAAVQRAHAEARERAAAGAREKAAKAAAEARERV 619

Query: 650 RAE--RAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPR 707
            AE      +  A  A    AA      AAA    + QQ+N+NDL+SFFS  SRP+SAPR
Sbjct: 620 NAEAREKEARVRAERAAVERAAAEARGRAAAQAKAKQQQENNNDLDSFFSSISRPNSAPR 679

Query: 708 PRANTSDSLFDSQSKGGPEPARRTSV----GASSNMRKASSTTNIVDDLSSIFGAAGSSA 763
            R N  D   DS +KGG   + R S     G + N+RKASS TNIVDDLSSIFG   + +
Sbjct: 680 QRTNPLDPFQDSWNKGGSFESSRESSRVPSGPTENLRKASSVTNIVDDLSSIFGVPATQS 739

Query: 764 GEFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEI 823
           G FQDV+GETEERRRARLERHQRTQERA KALAEKNERDLQ QR+Q E+ RI  TLDVEI
Sbjct: 740 GGFQDVDGETEERRRARLERHQRTQERAVKALAEKNERDLQVQREQVEKDRIGVTLDVEI 799

Query: 824 KRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQ 883
           KRW AGKEGN+RALL+T+QYVLWPE GWQPVSLTDLITAA+VKK YRKATLCIHPDKVQQ
Sbjct: 800 KRWGAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITAASVKKVYRKATLCIHPDKVQQ 859

Query: 884 KGANLQQKYIAEKVFDLLK 902
           KGANLQQKYIAEKVFD+LK
Sbjct: 860 KGANLQQKYIAEKVFDMLK 878

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145340151|ref|NP_193013.2| auxilin-related protein 2 [Arabidopsis thaliana] gi|122230016|sp|Q0WQ57.1|AUXI2_ARATH RecName: Full=Auxilin-related protein 2 gi|110737602|dbj|BAF00742.1| auxilin-like protein [Arabidopsis thaliana] gi|332657777|gb|AEE83177.1| auxilin-related protein 2 [Arabidopsis thaliana]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 426/917 (46%), Positives = 527/917 (57%), Gaps = 163/917 (17%)

Query: 1   MPVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESS 60
           MPVYDKPVYDD+ D+F+ +P L+  ST     SS  A F++VF+S S S  KH   + SS
Sbjct: 111 MPVYDKPVYDDE-DVFESIPELKIPST-----SSQSARFENVFSSISSSPTKHRK-QNSS 163

Query: 61  PLDDLLGN-LGKKETESRVKSEKDVSAFDDLLPGFGRSRSPSSNRSTSES-SQSQKPPSN 118
           P DDL+GN LGKKE++   + EK  S FDDL+PGFGR+ SP + R+TSE+ SQSQKPP  
Sbjct: 164 PFDDLMGNNLGKKESD---REEKGSSIFDDLIPGFGRTSSPPAKRTTSETTSQSQKPPYR 220

Query: 119 STKTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSGGVFDD 178
           + +T+S+V EDPF V E +++ +   S                          +GG  D 
Sbjct: 221 TAETSSNVKEDPFVVLEESTSTLREPS--------------------------TGGFTDP 254

Query: 179 LDSLNILGKSVPPVSPEINKRGNDRSLRSKSVSGTQTHPRKESIDRSSVENFDGYAQNNT 238
           L+ +   GK         N R  D S    SV G                   G   +  
Sbjct: 255 LEEI---GK--------FNSRKTDHS----SVHG-------------------GVFVDTD 280

Query: 239 PVDNFQGSNDTLFNMPSVATDSSRSAGRA-TSPPSYMSATDS-LRSAGRATSPPSYMSAT 296
           P+D+   S   +            S G++   PP  +S + S + S+G   S    +S  
Sbjct: 281 PLDSLGKSGPDM-----------NSRGKSHLRPPGNISGSQSPVESSGLYHS--KNVSFD 327

Query: 297 DSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAP 356
           D +     +T PP+ +  S                 F+S++DVWLTVSEIPLFTQPTSAP
Sbjct: 328 DVVEPQNTSTPPPTNSDGS-----------------FESSDDVWLTVSEIPLFTQPTSAP 370

Query: 357 PPSRPPPPRPTRVSKLETGNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQIDELE 416
           PP+              T   +KK NE  S   S   +H P S RA   S  ASQ+DEL+
Sbjct: 371 PPT-------RPPPPRPTRPIKKKVNE-PSIPTSAYHSHVPSSGRASVNSPTASQMDELD 422

Query: 417 DFAMSRSWNNVNEYGEVPSPEDVES-SIAAASAAAMKEAMDRAEAKFRHAKEMRERESFK 475
           DF++ R+    N Y +  S ED +  S AAASAAAMK+AMD+AEAKFRHAKE RE+ES K
Sbjct: 423 DFSIGRNQTAANGYPDPSSGEDSDVFSTAAASAAAMKDAMDKAEAKFRHAKERREKESLK 482

Query: 476 AARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIE 535
           A+RSRE             D  E  D   ++RE  E+Q RL+RER     E E+ + R  
Sbjct: 483 ASRSREG------------DHTENYDS--RERELREKQVRLDRERAEREAEMEKTQARER 528

Query: 536 KEKERAREIEKEREK---ARQAVERATREARERAAAEARLKAERAAVDKANAAARERAER 592
           +E+ER ++  +   +   ARQAVERATREARE           RAA +     A  + +R
Sbjct: 529 EEREREQKRIERERERLLARQAVERATREARE-----------RAATE-----AHAKVQR 572

Query: 593 AAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRA- 651
           AAV +           +ARERAERAA +       E     ARE+A  A  EA     A 
Sbjct: 573 AAVGKV---------TDARERAERAAVQRAHAEARERAAAGAREKAEKAAAEARERANAE 623

Query: 652 --ERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPR 709
             E+ A +  A  A    AA      AAA    + QQ+N+NDL+SFF+  SRPSS PR R
Sbjct: 624 VREKEA-KVRAERAAVERAAAEARGRAAAQAKAKQQQENNNDLDSFFNSVSRPSSVPRQR 682

Query: 710 ANTSDSLFDSQSKGG----PEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGE 765
            N  D   DS +KGG      P+ R   G + N+RKASS TNIVDDLSSIFGA  S +G 
Sbjct: 683 TNPPDPFQDSWNKGGSFESSRPSSRVPSGPTENLRKASSATNIVDDLSSIFGAPASQSGG 742

Query: 766 FQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKR 825
           FQDV+GETEERRRARLERHQRTQERAAKALAEKNERDLQ QR+QAE+ RI  TLDVEI+R
Sbjct: 743 FQDVDGETEERRRARLERHQRTQERAAKALAEKNERDLQVQREQAEKDRIGGTLDVEIRR 802

Query: 826 WAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKG 885
           W AGKEGN+RALL+T+QYVLWPE GWQPVSLTDLIT A+VKK YRKATLCIHPDKVQQKG
Sbjct: 803 WGAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITGASVKKVYRKATLCIHPDKVQQKG 862

Query: 886 ANLQQKYIAEKVFDLLK 902
           ANLQQKYIAEKVFD+LK
Sbjct: 863 ANLQQKYIAEKVFDMLK 879

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186464|ref|NP_001190708.1| auxilin-related protein 2 [Arabidopsis thaliana] gi|332657778|gb|AEE83178.1| auxilin-related protein 2 [Arabidopsis thaliana]

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 426/917 (46%), Positives = 527/917 (57%), Gaps = 165/917 (17%)

Query: 1   MPVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESS 60
           MPVYDKPVYDD+ D+F+ +P L+  ST     SS  A F++VF+S S S  KH   + SS
Sbjct: 111 MPVYDKPVYDDE-DVFESIPELKIPST-----SSQSARFENVFSSISSSPTKHRK-QNSS 163

Query: 61  PLDDLLGN-LGKKETESRVKSEKDVSAFDDLLPGFGRSRSPSSNRSTSES-SQSQKPPSN 118
           P DDL+GN LGKKE++   + EK  S FDDL+PGFGR+ SP + R+TSE+ SQSQKPP  
Sbjct: 164 PFDDLMGNNLGKKESD---REEKGSSIFDDLIPGFGRTSSPPAKRTTSETTSQSQKPPYR 220

Query: 119 STKTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSGGVFDD 178
           + +T+S+V EDPF V E +++ +   S                          +GG  D 
Sbjct: 221 TAETSSNVKEDPFVVLEESTSTLREPS--------------------------TGGFTDP 254

Query: 179 LDSLNILGKSVPPVSPEINKRGNDRSLRSKSVSGTQTHPRKESIDRSSVENFDGYAQNNT 238
           L+ +   GK         N R  D S    SV G                   G   +  
Sbjct: 255 LEEI---GK--------FNSRKTDHS----SVHG-------------------GVFVDTD 280

Query: 239 PVDNFQGSNDTLFNMPSVATDSSRSAGRA-TSPPSYMSATDS-LRSAGRATSPPSYMSAT 296
           P+D+   S   +            S G++   PP  +S + S + S+G   S    +S  
Sbjct: 281 PLDSLGKSGPDM-----------NSRGKSHLRPPGNISGSQSPVESSGLYHS--KNVSFD 327

Query: 297 DSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAP 356
           D +     +T PP+ +  S                 F+S++DVWLTVSEIPLFTQPTSAP
Sbjct: 328 DVVEPQNTSTPPPTNSDGS-----------------FESSDDVWLTVSEIPLFTQPTSAP 370

Query: 357 PPSRPPPPRPTRVSKLETGNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQIDELE 416
           PP+              T   +KK NE  S   S   +H P S RA   S  ASQ+DEL+
Sbjct: 371 PPT-------RPPPPRPTRPIKKKVNE-PSIPTSAYHSHVPSSGRASVNSPTASQMDELD 422

Query: 417 DFAMSRSWNNVNEYGEVPSPEDVES-SIAAASAAAMKEAMDRAEAKFRHAKEMRERESFK 475
           DF++ R+    N Y +  S ED +  S AAASAAAMK+AMD+AEAKFRHAKE RE+ES K
Sbjct: 423 DFSIGRNQTAANGYPDPSSGEDSDVFSTAAASAAAMKDAMDKAEAKFRHAKERREKESLK 482

Query: 476 AARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIE 535
           A+RSRE             D  E  D   ++RE  E+Q RL+RER     E E+ + R  
Sbjct: 483 ASRSREG------------DHTENYDS--RERELREKQVRLDRERAEREAEMEKTQARER 528

Query: 536 KEKERAREIEKEREK---ARQAVERATREARERAAAEARLKAERAAVDKANAAARERAER 592
           +E+ER ++  +   +   ARQAVERATREARE           RAA +     A  + +R
Sbjct: 529 EEREREQKRIERERERLLARQAVERATREARE-----------RAATE-----AHAKVQR 572

Query: 593 AAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRA- 651
           AAV +           +ARERAERAA +       E     ARE+A  A  EA     A 
Sbjct: 573 AAVGKV---------TDARERAERAAVQRAHAEARERAAAGAREKAEKAAAEARERANAE 623

Query: 652 --ERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPR 709
             E+ A +  A  A    AA      AAA    + QQ+N+NDL+SFF+  SRPSS PR R
Sbjct: 624 VREKEA-KVRAERAAVERAAAEARGRAAAQAKAKQQQENNNDLDSFFNSVSRPSSVPRQR 682

Query: 710 ANTSDSLFDSQSKGG----PEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGE 765
            N  D   DS +KGG      P+ R   G + N+RKASS TNIVDDLSSIFGA  S +G 
Sbjct: 683 TNPPDPFQDSWNKGGSFESSRPSSRVPSGPTENLRKASSATNIVDDLSSIFGA--SQSGG 740

Query: 766 FQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKR 825
           FQDV+GETEERRRARLERHQRTQERAAKALAEKNERDLQ QR+QAE+ RI  TLDVEI+R
Sbjct: 741 FQDVDGETEERRRARLERHQRTQERAAKALAEKNERDLQVQREQAEKDRIGGTLDVEIRR 800

Query: 826 WAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKG 885
           W AGKEGN+RALL+T+QYVLWPE GWQPVSLTDLIT A+VKK YRKATLCIHPDKVQQKG
Sbjct: 801 WGAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITGASVKKVYRKATLCIHPDKVQQKG 860

Query: 886 ANLQQKYIAEKVFDLLK 902
           ANLQQKYIAEKVFD+LK
Sbjct: 861 ANLQQKYIAEKVFDMLK 877

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790666|ref|XP_002863218.1| hypothetical protein ARALYDRAFT_333056 [Arabidopsis lyrata subsp. lyrata] gi|297309052|gb|EFH39477.1| hypothetical protein ARALYDRAFT_333056 [Arabidopsis lyrata subsp. lyrata]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 414/950 (43%), Positives = 517/950 (54%), Gaps = 201/950 (21%)

Query: 1   MPVYDKPVYDDDVDIFKGLPGLRTSSTPAAAASSSGANFDDVFASFSRSSAKHESARESS 60
           MPVYDKPVYDD+ D+F+ +P L+  ST     SS  A FDDVF+S      KH   + SS
Sbjct: 112 MPVYDKPVYDDE-DVFESIPELKIPST-----SSQSARFDDVFSS----PPKHRK-QNSS 160

Query: 61  PLDDLLGN-LGKKETESRVKSEKDVSAFDDLLPGFGRSRSPSSNRSTSESS-QSQKPPSN 118
           P DDL+GN LGK+ TES  + EK  S FDDL+PGFGR+ SP   R TSE++ QSQKPP  
Sbjct: 161 PFDDLMGNNLGKRGTESD-REEKASSIFDDLIPGFGRTSSPPPKRKTSETTNQSQKPPYR 219

Query: 119 STKTASSVMEDPFGVSESTSTHVGSSSEVFTDRLEEIGKFGGSGSAKVNGSSVSGGVFDD 178
           + +T+S+V EDPF V E +++         T R    G F                    
Sbjct: 220 TAETSSNVEEDPFVVLEESAS---------TPREPSTGGF-------------------- 250

Query: 179 LDSLNILGKSVPPVSPEINKRGNDRSLRSKSVSGTQTHPRKESIDRSSVENFDGYAQNNT 238
            D L  +GK         N R  D S                S+ R    + D       
Sbjct: 251 TDPLEDIGK--------FNSRKTDHS----------------SVHRGVFVDID------- 279

Query: 239 PVDNFQGSNDTLFNMPSVATDSSRSAGRA-TSPPSYMSATDSLRSAGRATSPPSY----M 293
           P+D+   S   +            S G++   PP  +SA+ S        SP SY    +
Sbjct: 280 PLDSLGKSGPDM-----------NSRGKSHLRPPGNISASQS----PPVESPGSYHSKKV 324

Query: 294 SATDSLRSAGRATSPPSYTSASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPT 353
           S  D L     +T PP+ ++ S                 F+S++DVWLTVSEIPLFTQPT
Sbjct: 325 SFDDVLEPQNTSTPPPTNSNGS-----------------FESSDDVWLTVSEIPLFTQPT 367

Query: 354 SAPPPSRPPPPRPTRVSKLETGNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQID 413
           SAPPP+              T   +K+ NE  S   S   +H P + RA   S AASQ+D
Sbjct: 368 SAPPPT-------RPPPPRPTRPIKKRVNE-PSIPTSTNHSHIPSTARASVNSPAASQMD 419

Query: 414 ELEDFAMSRSWNNVNEYGEVPSPEDVES-SIAAASAAAMKEAMDRAEAKFRHAKEMRERE 472
           EL+DF++ R+    N Y + PS ED +  S AAASAAAMK+AMD+AEAKFRHAKE R +E
Sbjct: 420 ELDDFSIGRNQTAANGYPDPPSGEDSDVFSAAAASAAAMKDAMDKAEAKFRHAKERRVKE 479

Query: 473 SFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERER-EREREEKEREK 531
           + KA+R+RE      E++    D++ER        E  E Q RL+RER ERE E  + ++
Sbjct: 480 NLKASRNRE------EDQTENYDSRER--------ELRENQVRLDRERAEREAEMVKEQE 525

Query: 532 KRIEKEKERAREIEKEREK--ARQAVERATREARERAAAEARLKAERAAVDKANAAARER 589
           +  E+ +   + IE+ERE+  ARQAVERATREARERAA EA  K +              
Sbjct: 526 REREEREREQKRIERERERLLARQAVERATREARERAATEAHAKVQ-------------- 571

Query: 590 AERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQ 649
             RAAV +A          +ARERAERAA +       E     ARE+A+ A  EA    
Sbjct: 572 --RAAVGKA---------TDARERAERAAVQRAHAEARERAAAGAREKAAKAAAEAREKA 620

Query: 650 RAERAAVQRAAS-EARERAAAEARERAAAAARANQNQQK------------NDNDLESFF 696
               A  +   + EARE+ A    ERAA    A + + +            N+NDL+SFF
Sbjct: 621 EKAAAEARERVNAEAREKEARVRAERAAVERAAAEARGRAAAQAKAKQQQENNNDLDSFF 680

Query: 697 SMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSV----GASSNMRKASSTTNIVDDL 752
           S  SRP+SAPR R N  D   DS +KGG   +RR S     G + N++KASS TNIVDDL
Sbjct: 681 SSISRPNSAPRQRTNPLDPFQDSWNKGGSFESRRESSRVPSGPTENLKKASSVTNIVDDL 740

Query: 753 SSIFGAAGSSAGEF---------------QDVEGETEERRR-----ARLERHQRTQERAA 792
           SSIFG  GS+  E                 DV G    R       A +  +  +    A
Sbjct: 741 SSIFG--GSAISELPNLVGFKMLMEKLKRDDVPGWNATRGHRSGLFASMFYNMNSFLNQA 798

Query: 793 KALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQ 852
           KALAEKNERDLQ QR+QAE+ RI ETLDVEI+RW AGKEGN+RALL+T+QYVLWPE GWQ
Sbjct: 799 KALAEKNERDLQVQREQAEKDRIGETLDVEIRRWGAGKEGNLRALLSTLQYVLWPECGWQ 858

Query: 853 PVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLK 902
           PVSLTDLIT A+VKK YRKATLCIHPDKVQQKGANLQQKYIAEKVFD+LK
Sbjct: 859 PVSLTDLITGASVKKVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDMLK 908

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	965
TAIR|locus:2135763	891	AT4G12770 [Arabidopsis thalian	0.227	0.246	0.607	3e-98
TAIR|locus:2135778	904	AT4G12780 [Arabidopsis thalian	0.227	0.243	0.607	4.3e-95
TAIR|locus:2036967	523	AT1G21660 [Arabidopsis thalian	0.189	0.349	0.481	8.1e-50
TAIR|locus:2115245	1422	AT4G36520 [Arabidopsis thalian	0.123	0.083	0.764	8.9e-50
TAIR|locus:2018462	1448	AUL1 "AT1G75310" [Arabidopsis	0.123	0.082	0.647	2.4e-39
TAIR|locus:2037256	651	JAC1 "J-domain protein require	0.104	0.155	0.5	4.6e-23
TAIR|locus:2009817	455	AT1G30280 [Arabidopsis thalian	0.119	0.252	0.396	9.4e-17
UNIPROTKB|F1NC60	1225	Gga.54538 "Uncharacterized pro	0.086	0.067	0.458	1.4e-14
DICTYBASE|DDB_G0276447	730	DDB_G0276447 "BAR domain-conta	0.097	0.128	0.418	1.8e-14
UNIPROTKB|F1NL76	1265	Gga.54538 "Uncharacterized pro	0.086	0.065	0.458	3.5e-14

TAIR|locus:2135763 AT4G12770 [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 3.0e-98, Sum P(3) = 3.0e-98
 Identities = 136/224 (60%), Positives = 152/224 (67%)

Query:   683 QNQQKNDNDLEXXXXXXXXXXXXXXXXXNTSDSLFDSQSKGGP----EPARRTSVGASSN 738
             + QQ+N+NDL+                 N  D   DS +KGG      P+ R   G + N
Sbjct:   656 KQQQENNNDLDSFFNSVSRPSSVPRQRTNPPDPFQDSWNKGGSFESSRPSSRVPSGPTEN 715

Query:   739 MRKASSTTNIVDDLXXXXXXXXXXXXEFQDVXXXXXXXXXXXXXXHQRTQERAAKALAEK 798
             +RKASS TNIVDDL             FQDV              HQRTQERAAKALAEK
Sbjct:   716 LRKASSATNIVDDLSSIFGAPASQSGGFQDVDGETEERRRARLERHQRTQERAAKALAEK 775

Query:   799 NERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTD 858
             NERDLQ QR+QAE+ RI  TLDVEI+RW AGKEGN+RALL+T+QYVLWPE GWQPVSLTD
Sbjct:   776 NERDLQVQREQAEKDRIGGTLDVEIRRWGAGKEGNLRALLSTLQYVLWPECGWQPVSLTD 835

Query:   859 LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLK 902
             LIT A+VKK YRKATLCIHPDKVQQKGANLQQKYIAEKVFD+LK
Sbjct:   836 LITGASVKKVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDMLK 879

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2135778 AT4G12780 [Arabidopsis thaliana (taxid:3702)]

 Score = 656 (236.0 bits), Expect = 4.3e-95, Sum P(3) = 4.3e-95
 Identities = 136/224 (60%), Positives = 150/224 (66%)

Query:   683 QNQQKNDNDLEXXXXXXXXXXXXXXXXXNTSDSLFDSQSKGGPEPARRTSV----GASSN 738
             + QQ+N NDL+                 N  D   DS +KGG   + R S+    G   N
Sbjct:   669 KQQQENTNDLDSFFSSISRPNSAPRQRTNPLDPFQDSWNKGGSFESSRESLRVPPGQPEN 728

Query:   739 MRKASSTTNIVDDLXXXXXXXXXXXXEFQDVXXXXXXXXXXXXXXHQRTQERAAKALAEK 798
             +RK SS TNIVDDL             FQDV              HQRTQERAAKALAEK
Sbjct:   729 LRKTSSVTNIVDDLSSIFGASASQSGGFQDVDGETEERRRARLERHQRTQERAAKALAEK 788

Query:   799 NERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTD 858
             NERDLQ QR+Q E+ RI  TLDVEIKRW AGKEGN+RALL+T+QYVLWPE GWQPVSLTD
Sbjct:   789 NERDLQVQREQVEKDRIGVTLDVEIKRWGAGKEGNLRALLSTLQYVLWPECGWQPVSLTD 848

Query:   859 LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLK 902
             LITAA+VKK YRKATLCIHPDKVQQKGANLQQKYIAEKVFD+LK
Sbjct:   849 LITAASVKKVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDMLK 892

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2036967 AT1G21660 [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.1e-50, Sum P(3) = 8.1e-50
 Identities = 89/185 (48%), Positives = 122/185 (65%)

Query:   718 DSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLXXXXXXXXXXXXEFQDVXXXXXXXX 777
             ++  K      ++T  G S N +K  +  N+VDD             +F+++        
Sbjct:   329 ETTRKQASNAPKKTPNGVS-NAKKPPAPANLVDDFSALFGEDPIFR-QFEEIPGESEERR 386

Query:   778 XXXXXXHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRAL 837
                    QRT+ R A+A+A+ N RD Q++ +Q +R RI+ET+D EI+RWA GKEGN+RAL
Sbjct:   387 KARWDREQRTKSRVAQAVADMNNRDHQSRIEQEQRTRISETVDTEIRRWATGKEGNMRAL 446

Query:   838 LATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKV 897
             L+++  VLWP  GW+ VS+TDLIT++AVKK YRKATL +HPDKVQQKGA L+QKYIAEKV
Sbjct:   447 LSSLHIVLWPGCGWEAVSITDLITSSAVKKVYRKATLYVHPDKVQQKGATLEQKYIAEKV 506

Query:   898 FDLLK 902
             FD+LK
Sbjct:   507 FDILK 511

GO:0005634 "nucleus" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2115245 AT4G36520 [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 8.9e-50, Sum P(3) = 8.9e-50
 Identities = 91/119 (76%), Positives = 108/119 (90%)

Query:   784 HQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQY 843
             HQRT +R AKALAEKN RDL AQR+QAER RIAETLD E+KRW++GKEGNIRALL+T+QY
Sbjct:  1293 HQRTADRVAKALAEKNMRDLVAQREQAERIRIAETLDTEVKRWSSGKEGNIRALLSTLQY 1352

Query:   844 VLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLK 902
             +L PESGWQP+ LT++IT+AAVK+ YRKATLC+HPDK+QQ+GAN+ QKYI EKVFDLLK
Sbjct:  1353 ILGPESGWQPLPLTEVITSAAVKRAYRKATLCVHPDKLQQRGANIHQKYICEKVFDLLK 1411

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2018462 AUL1 "AT1G75310" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 2.4e-39, Sum P(3) = 2.4e-39
 Identities = 77/119 (64%), Positives = 104/119 (87%)

Query:   784 HQRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQY 843
             HQRT +RAA+ALAEK  RDL+ Q++Q ER+R+AE LD ++KRW++GKE N+RAL++T+QY
Sbjct:  1319 HQRTSDRAAEALAEKKLRDLKTQKEQTERNRLAEALDADVKRWSSGKENNLRALISTLQY 1378

Query:   844 VLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLK 902
             +L  ESGW+P+ LTDL+++A+V+K YRKATL +HPDK+QQ+GA+ QQKYI EKVFDLLK
Sbjct:  1379 ILGAESGWKPIPLTDLVSSASVRKAYRKATLYVHPDKLQQRGASTQQKYICEKVFDLLK 1437

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2037256 JAC1 "J-domain protein required for chloroplast accumulation response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 4.6e-23, Sum P(3) = 4.6e-23
 Identities = 53/106 (50%), Positives = 81/106 (76%)

Query:   797 EKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSL 856
             ++N+ + +A +D  E     + +D +I++W++GK GNIR+LL+T+QY+LW  SGW+PV L
Sbjct:   539 DENKME-EANKDAEE----IKNIDAKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPL 593

Query:   857 TDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLK 902
              D+I   AV+K Y++A L +HPDK+QQKGA+  QKY+AEKVF+LL+
Sbjct:   594 MDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQ 639

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009903 "chloroplast avoidance movement" evidence=IMP

GO:0009904 "chloroplast accumulation movement" evidence=IMP

GO:0071483 "cellular response to blue light" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

TAIR|locus:2009817 AT1G30280 [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 9.4e-17, Sum P(2) = 9.4e-17
 Identities = 48/121 (39%), Positives = 74/121 (61%)

Query:   788 QERAAKALAEKNERD-LQAQRDQ----AERHRIAETLDVEIKRWAAGKEGNIRALLATMQ 842
             +ER+ +  A++ E D + ++R +    +E     E  D EI+ W  GKE NIR LL+T+ 
Sbjct:   321 KERSQRPEAKQTEEDVIDSRRSEEEPKSEEEMEMEMKDEEIRIWLTGKETNIRLLLSTLH 380

Query:   843 YVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQ-QKYIAEKVFDLL 901
             +VLW  S W  + L +L   + VKK Y++A LC+HPDK+QQ+G     QK +A +VF +L
Sbjct:   381 HVLWSNSNWDSIPLANLRDGSQVKKAYQRARLCLHPDKLQQRGGTSPIQKSVASRVFAIL 440

Query:   902 K 902
             +
Sbjct:   441 Q 441

GO:0005737 "cytoplasm" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

UNIPROTKB|F1NC60 Gga.54538 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 191 (72.3 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
 Identities = 39/85 (45%), Positives = 54/85 (63%)

Query:   797 EKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVS 855
             +K  + +   R Q E  +  + L ++I  W  GKE NIRAL++T+  VLW  E+ W+PVS
Sbjct:  1109 KKGPKTIAEMRKQ-EMSKDMDPLKLKILEWIEGKERNIRALISTLHTVLWEGENKWKPVS 1167

Query:   856 LTDLITAAAVKKCYRKATLCIHPDK 880
             + DL+T   VKK YRKA L +HPDK
Sbjct:  1168 MADLVTPEQVKKYYRKAVLVVHPDK 1192

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

DICTYBASE|DDB_G0276447 DDB_G0276447 "BAR domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 209 (78.6 bits), Expect = 1.8e-14, Sum P(4) = 1.8e-14
 Identities = 41/98 (41%), Positives = 61/98 (62%)

Query:   809 QAERHRIAETLDVEIKRWA--AGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVK 866
             Q ER  +   +  +IK W    G++ N+R LL+T+  VLW ESGW+ V+   L+T   VK
Sbjct:   623 QHERSNVEPIVSEKIKMWGEKGGRKNNLRVLLSTLHEVLWIESGWEKVTYGSLVTPIQVK 682

Query:   867 KCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQ 904
             K YRKA + +HPDKV      ++QK IA+++F+ L+ Q
Sbjct:   683 KVYRKAIIVVHPDKVHN--GTMEQKMIAQRIFETLRDQ 718

GO:0005737 "cytoplasm" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

UNIPROTKB|F1NL76 Gga.54538 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 191 (72.3 bits), Expect = 3.5e-14, Sum P(3) = 3.5e-14
 Identities = 39/85 (45%), Positives = 54/85 (63%)

Query:   797 EKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVS 855
             +K  + +   R Q E  +  + L ++I  W  GKE NIRAL++T+  VLW  E+ W+PVS
Sbjct:  1149 KKGPKTIAEMRKQ-EMSKDMDPLKLKILEWIEGKERNIRALISTLHTVLWEGENKWKPVS 1207

Query:   856 LTDLITAAAVKKCYRKATLCIHPDK 880
             + DL+T   VKK YRKA L +HPDK
Sbjct:  1208 MADLVTPEQVKKYYRKAVLVVHPDK 1232

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.9__90__AT4G12770.1 annotation not avaliable (890 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	965
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	2e-21
TIGR02794	346	TIGR02794, tolA_full, TolA protein	4e-19
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	5e-19
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	5e-18
PRK05035	695	PRK05035, PRK05035, electron transport complex pro	2e-16
COG3064	387	COG3064, TolA, Membrane protein involved in colici	4e-16
TIGR02794	346	TIGR02794, tolA_full, TolA protein	8e-16
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-15
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	7e-15
COG3064	387	COG3064, TolA, Membrane protein involved in colici	1e-14
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	1e-14
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-14
COG2268	548	COG2268, COG2268, Uncharacterized protein conserve	2e-13
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-13
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-13
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	5e-13
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-12
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	4e-12
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-12
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	9e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-11
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-11
COG2268	548	COG2268, COG2268, Uncharacterized protein conserve	3e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-11
PRK12678	672	PRK12678, PRK12678, transcription termination fact	4e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-11
COG3064	387	COG3064, TolA, Membrane protein involved in colici	5e-11
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-11
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-11
PRK12678	672	PRK12678, PRK12678, transcription termination fact	7e-11
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	9e-11
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-10
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-10
PRK07735	430	PRK07735, PRK07735, NADH dehydrogenase subunit C;	2e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-10
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-10
PRK07735	430	PRK07735, PRK07735, NADH dehydrogenase subunit C;	3e-10
COG2268	548	COG2268, COG2268, Uncharacterized protein conserve	4e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-10
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	6e-10
pfam13514	1118	pfam13514, AAA_27, AAA domain	6e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-09
PRK12678	672	PRK12678, PRK12678, transcription termination fact	1e-09
PRK07735	430	PRK07735, PRK07735, NADH dehydrogenase subunit C;	1e-09
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	2e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-09
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	2e-09
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	2e-09
COG2268	548	COG2268, COG2268, Uncharacterized protein conserve	3e-09
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-09
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-09
pfam13514	1118	pfam13514, AAA_27, AAA domain	4e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-09
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	5e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-09
TIGR02794	346	TIGR02794, tolA_full, TolA protein	1e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-08
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	1e-08
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	2e-08
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	2e-08
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-08
PRK06991	270	PRK06991, PRK06991, ferredoxin; Provisional	2e-08
pfam13830	321	pfam13830, DUF4192, Domain of unknown function (DU	2e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-08
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	4e-08
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	4e-08
pfam13514	1118	pfam13514, AAA_27, AAA domain	4e-08
pfam13514	1118	pfam13514, AAA_27, AAA domain	4e-08
PRK06991	270	PRK06991, PRK06991, ferredoxin; Provisional	4e-08
PRK05035	695	PRK05035, PRK05035, electron transport complex pro	5e-08
PRK07735	430	PRK07735, PRK07735, NADH dehydrogenase subunit C;	5e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-08
COG3064	387	COG3064, TolA, Membrane protein involved in colici	1e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	1e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	4e-07
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	4e-07
COG0711	161	COG0711, AtpF, F0F1-type ATP synthase, subunit b [	4e-07
PRK12678	672	PRK12678, PRK12678, transcription termination fact	5e-07
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	5e-07
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	5e-07
PRK14900	1052	PRK14900, valS, valyl-tRNA synthetase; Provisional	7e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-07
PRK12678	672	PRK12678, PRK12678, transcription termination fact	1e-06
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	1e-06
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	1e-06
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-06
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	2e-06
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	2e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	2e-06
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	2e-06
PLN03237	1465	PLN03237, PLN03237, DNA topoisomerase 2; Provision	2e-06
PLN03237	1465	PLN03237, PLN03237, DNA topoisomerase 2; Provision	2e-06
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	2e-06
PRK12705	508	PRK12705, PRK12705, hypothetical protein; Provisio	2e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-06
COG1340	294	COG1340, COG1340, Uncharacterized archaeal coiled-	3e-06
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	3e-06
PRK06669	281	PRK06669, fliH, flagellar assembly protein H; Vali	3e-06
pfam08017	393	pfam08017, Fibrinogen_BP, Fibrinogen binding prote	3e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-06
COG1566	352	COG1566, EmrA, Multidrug resistance efflux pump [D	4e-06
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	4e-06
PRK05759	156	PRK05759, PRK05759, F0F1 ATP synthase subunit B; V	4e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	6e-06
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	6e-06
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	6e-06
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	6e-06
PRK05035	695	PRK05035, PRK05035, electron transport complex pro	7e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-06
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	7e-06
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	7e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-06
PRK05759	156	PRK05759, PRK05759, F0F1 ATP synthase subunit B; V	8e-06
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	9e-06
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	1e-05
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	1e-05
PRK12472	508	PRK12472, PRK12472, hypothetical protein; Provisio	1e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-05
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	1e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
COG0711	161	COG0711, AtpF, F0F1-type ATP synthase, subunit b [	2e-05
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	2e-05
PRK12705	508	PRK12705, PRK12705, hypothetical protein; Provisio	2e-05
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	2e-05
PRK05759	156	PRK05759, PRK05759, F0F1 ATP synthase subunit B; V	2e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	2e-05
COG1842	225	COG1842, PspA, Phage shock protein A (IM30), suppr	2e-05
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	3e-05
COG0330	291	COG0330, HflC, Membrane protease subunits, stomati	3e-05
COG3599	212	COG3599, DivIVA, Cell division initiation protein	3e-05
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	4e-05
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	4e-05
PRK00106	535	PRK00106, PRK00106, hypothetical protein; Provisio	4e-05
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	5e-05
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	5e-05
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	5e-05
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	5e-05
TIGR02971	327	TIGR02971, heterocyst_DevB, ABC exporter membrane	5e-05
pfam05701	484	pfam05701, DUF827, Plant protein of unknown functi	5e-05
PRK07352	174	PRK07352, PRK07352, F0F1 ATP synthase subunit B; V	6e-05
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	7e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	7e-05
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	9e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	1e-04
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	1e-04
PRK12472	508	PRK12472, PRK12472, hypothetical protein; Provisio	1e-04
pfam10174	774	pfam10174, Cast, RIM-binding protein of the cytoma	1e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	1e-04
pfam09756	189	pfam09756, DDRGK, DDRGK domain	1e-04
COG5281	833	COG5281, COG5281, Phage-related minor tail protein	1e-04
PRK11637	428	PRK11637, PRK11637, AmiB activator; Provisional	1e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	2e-04
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	2e-04
PRK12472	508	PRK12472, PRK12472, hypothetical protein; Provisio	2e-04
PRK12472	508	PRK12472, PRK12472, hypothetical protein; Provisio	2e-04
COG0330	291	COG0330, HflC, Membrane protease subunits, stomati	2e-04
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	2e-04
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	2e-04
pfam09756	189	pfam09756, DDRGK, DDRGK domain	2e-04
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	2e-04
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	2e-04
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	2e-04
COG1538	457	COG1538, TolC, Outer membrane protein [Cell envelo	2e-04
TIGR03345	852	TIGR03345, VI_ClpV1, type VI secretion ATPase, Clp	2e-04
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	2e-04
COG0711	161	COG0711, AtpF, F0F1-type ATP synthase, subunit b [	3e-04
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	3e-04
pfam05914	379	pfam05914, RIB43A, RIB43A	3e-04
pfam12037	276	pfam12037, DUF3523, Domain of unknown function (DU	3e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
pfam07111	739	pfam07111, HCR, Alpha helical coiled-coil rod prot	3e-04
COG0711	161	COG0711, AtpF, F0F1-type ATP synthase, subunit b [	4e-04
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	4e-04
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	4e-04
pfam09756	189	pfam09756, DDRGK, DDRGK domain	4e-04
TIGR03345	852	TIGR03345, VI_ClpV1, type VI secretion ATPase, Clp	4e-04
PRK09098	233	PRK09098, PRK09098, type III secretion system prot	4e-04
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	4e-04
COG0845	372	COG0845, AcrA, Membrane-fusion protein [Cell envel	4e-04
COG5192	1077	COG5192, BMS1, GTP-binding protein required for 40	4e-04
pfam13514	1118	pfam13514, AAA_27, AAA domain	5e-04
PRK05759	156	PRK05759, PRK05759, F0F1 ATP synthase subunit B; V	5e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	5e-04
PHA00430	568	PHA00430, PHA00430, tail fiber protein	5e-04
pfam13863	126	pfam13863, DUF4200, Domain of unknown function (DU	5e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	6e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	6e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	6e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	6e-04
PHA00430	568	PHA00430, PHA00430, tail fiber protein	6e-04
pfam03962	188	pfam03962, Mnd1, Mnd1 family	6e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	6e-04
TIGR03346	852	TIGR03346, chaperone_ClpB, ATP-dependent chaperone	7e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	7e-04
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	7e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-04
PRK07352	174	PRK07352, PRK07352, F0F1 ATP synthase subunit B; V	8e-04
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	8e-04
pfam05279	240	pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylas	9e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.001
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.001
PRK06991	270	PRK06991, PRK06991, ferredoxin; Provisional	0.001
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	0.001
COG1842	225	COG1842, PspA, Phage shock protein A (IM30), suppr	0.001
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.001
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.001
pfam09756	189	pfam09756, DDRGK, DDRGK domain	0.001
TIGR03345	852	TIGR03345, VI_ClpV1, type VI secretion ATPase, Clp	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	0.001
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	0.001
PLN02316	1036	PLN02316, PLN02316, synthase/transferase	0.001
pfam04632	649	pfam04632, FUSC, Fusaric acid resistance protein f	0.001
pfam10721	162	pfam10721, DUF2514, Protein of unknown function (D	0.001
pfam10721	162	pfam10721, DUF2514, Protein of unknown function (D	0.001
PLN03086	567	PLN03086, PLN03086, PRLI-interacting factor K; Pro	0.001
pfam04156	186	pfam04156, IncA, IncA protein	0.001
PRK14521	186	PRK14521, rpsP, 30S ribosomal protein S16; Provisi	0.001
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	0.001
pfam04094	843	pfam04094, DUF390, Protein of unknown function (DU	0.001
pfam00430	132	pfam00430, ATP-synt_B, ATP synthase B/B' CF(0)	0.001
PTZ00491	850	PTZ00491, PTZ00491, major vault protein; Provision	0.001
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
PRK07735	430	PRK07735, PRK07735, NADH dehydrogenase subunit C;	0.002
pfam13514	1118	pfam13514, AAA_27, AAA domain	0.002
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.002
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	0.002
pfam08017	393	pfam08017, Fibrinogen_BP, Fibrinogen binding prote	0.002
COG1566	352	COG1566, EmrA, Multidrug resistance efflux pump [D	0.002
COG1566	352	COG1566, EmrA, Multidrug resistance efflux pump [D	0.002
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	0.002
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.002
COG3599	212	COG3599, DivIVA, Cell division initiation protein	0.002
PRK11637	428	PRK11637, PRK11637, AmiB activator; Provisional	0.002
PRK09098	233	PRK09098, PRK09098, type III secretion system prot	0.002
COG0845	372	COG0845, AcrA, Membrane-fusion protein [Cell envel	0.002
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	0.002
PRK14521	186	PRK14521, rpsP, 30S ribosomal protein S16; Provisi	0.002
pfam00430	132	pfam00430, ATP-synt_B, ATP synthase B/B' CF(0)	0.002
pfam13904	261	pfam13904, DUF4207, Domain of unknown function (DU	0.002
COG3206	458	COG3206, GumC, Uncharacterized protein involved in	0.002
pfam11740	120	pfam11740, KfrA_N, Plasmid replication region DNA-	0.002
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	0.002
pfam06637	442	pfam06637, PV-1, PV-1 protein (PLVAP)	0.002
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.003
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	0.003
COG1538	457	COG1538, TolC, Outer membrane protein [Cell envelo	0.003
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.003
COG4487	438	COG4487, COG4487, Uncharacterized protein conserve	0.003
TIGR01554	384	TIGR01554, major_cap_HK97, phage major capsid prot	0.003
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.003
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	0.003
PRK12372	413	PRK12372, PRK12372, ribonuclease III; Reviewed	0.003
cd08045	212	cd08045, TAF4, TATA Binding Protein (TBP) Associat	0.003
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	0.003
PRK13709	1747	PRK13709, PRK13709, conjugal transfer nickase/heli	0.003
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	0.004
COG0330	291	COG0330, HflC, Membrane protease subunits, stomati	0.004
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	0.004
PLN03086	567	PLN03086, PLN03086, PRLI-interacting factor K; Pro	0.004
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.004
pfam00529	304	pfam00529, HlyD, HlyD family secretion protein	0.004
pfam02841	297	pfam02841, GBP_C, Guanylate-binding protein, C-ter	0.004
pfam14362	297	pfam14362, DUF4407, Domain of unknown function (DU	0.004
PRK14472	175	PRK14472, PRK14472, F0F1 ATP synthase subunit B; P	0.004
PRK14473	164	PRK14473, PRK14473, F0F1 ATP synthase subunit B; P	0.004
pfam08524	150	pfam08524, rRNA_processing, rRNA processing	0.004
pfam05236	255	pfam05236, TAF4, Transcription initiation factor T	0.004
smart00880	262	smart00880, CHAD, The CHAD domain is an alpha-heli	0.004
pfam00901	507	pfam00901, Orbi_VP5, Orbivirus outer capsid protei	0.004

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 97.6 bits (243), Expect = 2e-21
 Identities = 74/200 (37%), Positives = 117/200 (58%), Gaps = 12/200 (6%)

Query: 488 EERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKE 547
           E+   QQ  Q+   R  +QR+K E+Q+    E ++++  ++   K++EKE+  A+E +K+
Sbjct: 62  EQYNRQQQQQKSAKRAEEQRKKKEQQQ--AEELQQKQAAEQERLKQLEKERLAAQEQKKQ 119

Query: 548 REKARQAVERATREARE---RAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARE 604
            E+A +      ++A E   +AAA A+ KAE  A  K  AAA ++A   A ++A+AEA +
Sbjct: 120 AEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEA--KRAAAAAKKAAAEAKKKAEAEAAK 177

Query: 605 RAAAEARERAE-----RAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRA 659
           +AAAEA+++AE     +AAAEA+++A AEA++K A E    A  EA+A      A  + A
Sbjct: 178 KAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAA 237

Query: 660 ASEARERAAAEARERAAAAA 679
           A +A    AAE    A AAA
Sbjct: 238 AEKAAAAKAAEKAAAAKAAA 257

Length = 387

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 89.9 bits (223), Expect = 4e-19
 Identities = 64/205 (31%), Positives = 112/205 (54%), Gaps = 10/205 (4%)

Query: 491 ATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIE--KER 548
             QQ  + +  ++   +++ E Q++LE++ E   +++  E+ R ++ ++RA   +  K+ 
Sbjct: 48  VAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQA 107

Query: 549 EKARQAVERATR---EARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARER 605
           E+A +  E   +   EA+ + AAEA+ KAE  A  KA   A+++AE  A  +A AEA+ +
Sbjct: 108 EQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAK-K 166

Query: 606 AAAEARERAE---RAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASE 662
            AAEA+++AE   +A AEA+ +A AE  + +A    + A  EA A   AE AA   A +E
Sbjct: 167 KAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAE 226

Query: 663 ARERAAAEARERAAAAARANQNQQK 687
            +    AE  +    A+ +N  +Q 
Sbjct: 227 RKA-DEAELGDIFGLASGSNAEKQG 250

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 89.9 bits (223), Expect = 5e-19
 Identities = 61/182 (33%), Positives = 103/182 (56%), Gaps = 5/182 (2%)

Query: 463 RHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERERER 522
           + A+E R+++  + A   +  Q   +ER  +Q  +ERL    +Q+++ EE  +    +++
Sbjct: 75  KRAEEQRKKKEQQQAEELQQKQAAEQER-LKQLEKERL-AAQEQKKQAEEAAKQAALKQK 132

Query: 523 EREE---KEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAV 579
           + EE   K     + + E E  R     ++ A +A ++A  EA ++AAAEA+ KAE  A 
Sbjct: 133 QAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAA 192

Query: 580 DKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERAS 639
            KA A A+++AE  A ++A AEA+++AAAEA+  A +AAAEA+  A   A  K A + A+
Sbjct: 193 AKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAA 252

Query: 640 VA 641
             
Sbjct: 253 AK 254

Length = 387

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 86.8 bits (215), Expect = 5e-18
 Identities = 64/197 (32%), Positives = 110/197 (55%), Gaps = 13/197 (6%)

Query: 476 AARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIE 535
           A R+ E  +   +++A +   Q++   E ++ ++ E++R   +E++++ EE  ++    +
Sbjct: 74  AKRAEEQRKKKEQQQAEEL--QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQ 131

Query: 536 KEKERAREIEKEREKAR-QAVERATREARERAAAEARLKAERAAVDKANAAARERAERAA 594
           K+ E A        KA+ +A  +    A ++AAAEA+ KAE  A  KA A A+++AE  A
Sbjct: 132 KQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEA 191

Query: 595 VQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERA 654
             +A AEA+++A AEA    ++AAAEA+++A AEA+   A+         AEA   AE+A
Sbjct: 192 AAKAAAEAKKKAEAEA---KKKAAAEAKKKAAAEAKAAAAKA-------AAEAKAAAEKA 241

Query: 655 AVQRAASEARERAAAEA 671
           A  +AA +A    AA  
Sbjct: 242 AAAKAAEKAAAAKAAAE 258

Length = 387

>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional

 Score = 83.8 bits (208), Expect = 2e-16
 Identities = 81/261 (31%), Positives = 112/261 (42%), Gaps = 49/261 (18%)

Query: 462 FRHAK---EMRERESFKAARSRESVQPDR-EERATQQDAQERLDREMQQRE----KGEEQ 513
           +R AK      E+E  KA  ++      R E R      Q RL+RE   RE    K  E 
Sbjct: 431 YRQAKAEIRAIEQEKKKAEEAKA-----RFEAR------QARLEREKAAREARHKKAAEA 479

Query: 514 RRLERER------EREREEKEREKKRIEKEKER---------AREIEKEREKARQAVERA 558
           R  + +        R + +K    + I  +            ARE  K + +ARQA ++A
Sbjct: 480 RAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQA 539

Query: 559 TREARER----AAAEARLKAERAAVDKANAAARERAE--RAAVQRAQAEARERAAAEARE 612
              A  +    AAA AR KA++AA   ANA A E  +  +AAV  A A A+ + AA+   
Sbjct: 540 AAAADPKKAAVAAAIARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQ-- 597

Query: 613 RAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEAR 672
               AA+   E   AE   K+A   A++AR +A   ++AE+ A          R AA A 
Sbjct: 598 ----AASAEPEEQVAEVDPKKAAVAAAIARAKA---KKAEQQANAEPEEPVDPRKAAVAA 650

Query: 673 ERAAAAARANQNQQKNDNDLE 693
             A A AR    QQ N    E
Sbjct: 651 AIARAKARKAAQQQANAEPEE 671

Length = 695

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 81.1 bits (200), Expect = 4e-16
 Identities = 63/217 (29%), Positives = 119/217 (54%), Gaps = 15/217 (6%)

Query: 497 QERLDREMQQREKGEEQRRLERERERERE-EKEREKKRIEKEKERAREIEKEREKARQAV 555
           Q+R  +E Q  E+ + ++  E+ER ++ E E+ + +++ ++ +E  ++ + E+++  +  
Sbjct: 79  QQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQA 138

Query: 556 ERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAE 615
            +A  E +++A A     A  AA  KA A A+++AE AA           AA EA+ +AE
Sbjct: 139 RKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAK----------AAEEAKAKAE 188

Query: 616 RAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERA 675
            AAA+ +  A A+A  ++A+  A      A+A ++AE AA ++AA+E ++ AA    ++A
Sbjct: 189 AAAAKKKAEAEAKAAAEKAKAEAEAK---AKAEKKAEAAAEEKAAAEKKKAAAKAKADKA 245

Query: 676 AAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRANT 712
           AAAA+A + ++     L+  F   S   +AP+     
Sbjct: 246 AAAAKAAE-RKAAAAALDDIFGGLSSGKNAPKTGGGA 281

Length = 387

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 79.5 bits (196), Expect = 8e-16
 Identities = 65/244 (26%), Positives = 105/244 (43%), Gaps = 13/244 (5%)

Query: 434 PSPEDVESSIAAA---SAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREER 490
           P P      I A      A  ++A    + K   AK+ +ER+  K  +  E  +  R   
Sbjct: 29  PEPGGGGEIIQAVLVDPGAVAQQANRIQQQKKPAAKKEQERQK-KLEQQAEEAEKQRAAE 87

Query: 491 ATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREK 550
             +Q   E+     +  ++ E+  +   E++++ EE    K +   E +   E E E++ 
Sbjct: 88  QARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEA---KAKQAAEAKAKAEAEAEKKA 144

Query: 551 ARQAVERATREARERAAAEARLKAERA-----AVDKANAAARERAERAAVQRAQAEARER 605
             +A ++A  EA+ +AAAEA+ KA  A     A  KA A A+ +A+    +     A+ +
Sbjct: 145 KEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAK 204

Query: 606 AAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARE 665
           AAAEA  +AE A A A   A AE +  EA              ++   A    A SE  +
Sbjct: 205 AAAEAAAKAE-AEAAAAAAAEAERKADEAELGDIFGLASGSNAEKQGGARGNAAGSEVDK 263

Query: 666 RAAA 669
            AA 
Sbjct: 264 YAAI 267

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 80.6 bits (198), Expect = 3e-15
 Identities = 80/388 (20%), Positives = 164/388 (42%), Gaps = 22/388 (5%)

Query: 444  AAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDRE 503
            A   A A K+  + A+     AK   E  + +A  + E  +   +++   +   +   ++
Sbjct: 1327 AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386

Query: 504  MQQREKGEEQRRLEREREREREE---KEREKKRIEK------EKERAREIEKEREKARQA 554
             ++++K +E ++   E +++ +E       KK+ ++      EK++A E +K+ E+A++A
Sbjct: 1387 AEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKA 1446

Query: 555  VERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERA 614
             E   +    + A EA+ KAE A          E A++A   + +AE  ++ A EA++ A
Sbjct: 1447 DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA 1506

Query: 615  ERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARER 674
            E A  +A E   AE  +K    + +    +A+  ++AE         +A E   AE +++
Sbjct: 1507 E-AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKK 1565

Query: 675  AAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRT--S 732
            A  A +A +++       E           A   R      L++ + K   E A++   +
Sbjct: 1566 AEEAKKAEEDKNMALRKAEEA-------KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA 1618

Query: 733  VGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETE---ERRRARLERHQRTQE 789
               +  ++KA      V+ L          A E +  E E +        + E  ++  E
Sbjct: 1619 KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678

Query: 790  RAAKALAEKNERDLQAQRDQAERHRIAE 817
             A KA  ++ +     +++  E  +  E
Sbjct: 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEE 1706

Length = 2084

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 76.9 bits (190), Expect = 7e-15
 Identities = 53/243 (21%), Positives = 97/243 (39%), Gaps = 17/243 (6%)

Query: 452 KEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGE 511
           +E +   E      + ++E +  +A   RE  +  REE     + +     E ++RE+ E
Sbjct: 92  EERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREE 151

Query: 512 EQRRLEREREREREEKEREKKRIEKEKERAREIEKEREK-ARQAVERATRE------ARE 564
           E + LE +RE+   E+ERE +R E+++E+ RE+ + R +      ER   +       +E
Sbjct: 152 ELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQE 211

Query: 565 RAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARER 624
               + R K +  A  +       +  R      + E  +   AE            RER
Sbjct: 212 EYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAE--------RER 263

Query: 625 ANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQN 684
              +  E E  E+ +  +      +   R  +++   E  ER AAE  E      R  + 
Sbjct: 264 MLEKQAEDEELEQENAEK--RRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREE 321

Query: 685 QQK 687
           + +
Sbjct: 322 EAE 324

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 76.9 bits (189), Expect = 1e-14
 Identities = 64/202 (31%), Positives = 114/202 (56%), Gaps = 10/202 (4%)

Query: 475 KAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRI 534
           +  R +      ++    ++  +E++  E++ ++  E++R  + E+ER  + +E++K+  
Sbjct: 63  QYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERL-KAQEQQKQAE 121

Query: 535 EKEKERAREIEKEREKARQAV----ERATREARERAAAEARLKAERAAVDKANAAARERA 590
           E EK+   E +++ E+AR+A     ++A     + AA  A+LKA   A  KA   A + A
Sbjct: 122 EAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKA-EEAAKAA 180

Query: 591 ERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAR-EKEARERASVARTEAEALQ 649
           E A  +   A A+++A AEA+  AE+A AEA  +A AE + E  A E+A+  + +A A  
Sbjct: 181 EEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKA 240

Query: 650 RAERAAVQRAASEARERAAAEA 671
           +A++AA   AA++A ER AA A
Sbjct: 241 KADKAA---AAAKAAERKAAAA 259

Length = 387

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 76.1 bits (188), Expect = 1e-14
 Identities = 59/245 (24%), Positives = 100/245 (40%), Gaps = 19/245 (7%)

Query: 448 AAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQ-- 505
              M E ++R + +     + +     K  + RE +    EER  +++ ++  +RE +  
Sbjct: 98  REQMDEIIERIQEEDEAEAQEKRE---KQKKLREEIDEFNEERIERKEEEKEREREEELK 154

Query: 506 ----QREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKERE--KARQAVERAT 559
               QREK E +   E ER   +EEKERE  R+  ++E A +  +E +  +A    E   
Sbjct: 155 ILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYE 214

Query: 560 REARERAAAEARLKAE-RAAVDKANAA-ARERAERAAVQRAQAEA-RERAAAEARERAER 616
           R+ R++   EA  +   +  + +A      E+ ER   +RA+ EA RER   +  E  E 
Sbjct: 215 RKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEEL 274

Query: 617 AAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAA 676
               A +R     R K    R  + +   E  +R      +      R R     R+   
Sbjct: 275 EQENAEKR-----RMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREEEAERQARI 329

Query: 677 AAARA 681
              R 
Sbjct: 330 EEERQ 334

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 76.6 bits (189), Expect = 5e-14
 Identities = 53/240 (22%), Positives = 94/240 (39%), Gaps = 12/240 (5%)

Query: 453 EAMDRAEAKFRHAKEMRE--RESFKAARSRESVQPDREERATQQ--DAQERLDREMQQRE 508
           E ++  E K    ++     R+  +             E  ++Q    ++ L R   + E
Sbjct: 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743

Query: 509 KGEEQ-RRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAA 567
           + EE+  +L +E      E E  ++R+E+ +E   E E E E+    +E+   E     A
Sbjct: 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL---KA 800

Query: 568 AEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANA 627
               L   RA +   N  A    ER      +  A ER   +  E+ E   +E  E   A
Sbjct: 801 LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE-LSEDIESLAA 859

Query: 628 EAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQK 687
           E  E E         +E EAL   ERA+++ A +  R      + E     ++ ++ +++
Sbjct: 860 EIEELEELIEE--LESELEALL-NERASLEEALALLRSELEELSEELRELESKRSELRRE 916

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 73.7 bits (181), Expect = 2e-13
 Identities = 51/230 (22%), Positives = 82/230 (35%), Gaps = 9/230 (3%)

Query: 458 AEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLE 517
           AE +   A     R++       E     +    T++      + E +      E RR E
Sbjct: 230 AEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETRR-E 288

Query: 518 REREREREEKEREKKRIEKEKE-------RAREIEKEREKARQAVERATREARERAAAEA 570
            E+     E+  ++++ + E+E        ARE+     + ++  E   +E R      A
Sbjct: 289 AEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQE-RSYFINAA 347

Query: 571 RLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAR 630
           + +A+  A   AN A    A+  A      E  E   AE       A A  +E+     R
Sbjct: 348 QRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQEQVEIAVR 407

Query: 631 EKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAAR 680
            + A+  A     E +A   A R   +  A   R  A A      AAAA 
Sbjct: 408 AEAAKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAAAE 457

Length = 548

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 74.0 bits (181), Expect = 3e-13
 Identities = 64/257 (24%), Positives = 133/257 (51%), Gaps = 14/257 (5%)

Query: 444  AAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDRE 503
            A  +  A ++A  +AE   R A E+++ E  K A   +  +  ++    ++ A+E    +
Sbjct: 1260 ARMAHFARRQAAIKAEEA-RKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD 1318

Query: 504  MQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR 563
              +++  E +++ +  +++  E K+  +    + +  A E E   EKA +A E+   EA+
Sbjct: 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA-EAAEKKKEEAK 1377

Query: 564  ERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERA-----AAEARERAERAA 618
            ++A A  +   E+   D+A   A E  ++A   +  A A+++A      AE +++A+ A 
Sbjct: 1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK 1437

Query: 619  AEARERANAEAREKEARE--RASVARTEAEALQRAE----RAAVQRAASEARERAAAEAR 672
             +A E   A+  +K+A E  +A  A+ +AE  ++A+    +A   + A EA+++ A EA+
Sbjct: 1438 KKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK-AEEAK 1496

Query: 673  ERAAAAARANQNQQKND 689
            ++A  A +A + ++K D
Sbjct: 1497 KKADEAKKAAEAKKKAD 1513

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 73.6 bits (180), Expect = 4e-13
 Identities = 80/336 (23%), Positives = 152/336 (45%), Gaps = 14/336 (4%)

Query: 365  RPTRVSKLETGNARKKANEYSSFSNS--PQCTHSPKSTRAGTRSSAASQIDEL--EDFAM 420
                V + E      K  ++ +  ++   + T          + +   + +E    + A 
Sbjct: 1062 AKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAK 1121

Query: 421  SRSWNNVNEYGEVPSPEDVESSIAAASAA-AMKEAMDRAEAKFRHAKEMRERESFK---A 476
             ++  +  +  E    ED   +  A  A  A +  + R     R A+E R+ E  K   A
Sbjct: 1122 KKA-EDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEA 1180

Query: 477  ARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEK 536
            AR  E V+   E R  +   +    R+ ++  K EE R+ E  ++ E  +K  E K+  +
Sbjct: 1181 ARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAE 1240

Query: 537  EKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQ 596
            E ++A E     E  +    R    AR +AA +A    +   + KA    +    + A +
Sbjct: 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEE 1300

Query: 597  RAQAEARERAAAEAR--ERAERAAAEARERANA-EAREKEARERASVARTEAEALQRAER 653
            + +A+  ++ A EA+  + A++ A EA+++A+A + + +EA++ A  A+ EAEA      
Sbjct: 1301 KKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE 1360

Query: 654  AAVQRAASEARERAAAEARERAAAAARANQNQQKND 689
            AA ++A  EA E+   EA+++A AA +  + ++K D
Sbjct: 1361 AAEEKA--EAAEKKKEEAKKKADAAKKKAEEKKKAD 1394

Length = 2084

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 71.5 bits (176), Expect = 5e-13
 Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 19/236 (8%)

Query: 459 EAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLER 518
             K R AK  +ER++    + R   +   EER   +  +E   + + + E+ E +R+ ER
Sbjct: 10  NEKLRAAKVNKERDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEER 69

Query: 519 EREREREEK---EREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAE 575
              R   ++   EREK+R E+ +ER +E E+  E   +  E    EA+E+   + +L+ E
Sbjct: 70  REGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREE 129

Query: 576 RAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEAR 635
              +D+ N    ER  +   +  + E   +     RE+AER      ER   E +E++ R
Sbjct: 130 ---IDEFNEERIER--KEEEKEREREEELKILEYQREKAEREEEREAER--RERKEEKER 182

Query: 636 ERASVARTEAEALQRAE-----RAAVQRAASEARERAAAEARERAAAAARANQNQQ 686
           E A +   + EA    E     RA + +   E +ER     +E+  A  R  Q Q+
Sbjct: 183 EVARLRAQQEEAEDEREELDELRADLYQEEYERKER----QKEKEEAEKRRRQKQE 234

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 70.9 bits (174), Expect = 2e-12
 Identities = 46/260 (17%), Positives = 91/260 (35%), Gaps = 18/260 (6%)

Query: 437 EDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQ----PDREERAT 492
            ++E ++       ++E ++  + + + A+E  E  + +     E ++       E    
Sbjct: 223 RELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE 282

Query: 493 QQDAQERL--------DREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREI 544
            ++ Q+ L          E Q++   E    LER+ E    + E  + ++++  E   E+
Sbjct: 283 IEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342

Query: 545 EKE----REKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQA 600
           E++    +E+             E    E+RL+     ++   +   +   + A    + 
Sbjct: 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEI 402

Query: 601 EARERAAAEARERAERAAAEARE--RANAEAREKEARERASVARTEAEALQRAERAAVQR 658
           E  E       +R ER   E  E  +   EA  KE +        E E LQ       + 
Sbjct: 403 ERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEA 462

Query: 659 AASEARERAAAEARERAAAA 678
                 E   AE    AA  
Sbjct: 463 LEELREELEEAEQALDAAER 482

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 70.9 bits (174), Expect = 3e-12
 Identities = 50/231 (21%), Positives = 83/231 (35%), Gaps = 5/231 (2%)

Query: 457 RAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLD--REMQQREKGEEQR 514
            AE K    +E  ER         + ++    +    +  QE     RE++      + +
Sbjct: 176 EAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLK 235

Query: 515 RLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKA 574
            L +E E   EE  R ++ +E+ +E   E EKE E+ +  +E    E  E       LK 
Sbjct: 236 ELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKE 295

Query: 575 ERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEA 634
           E   ++   +  RER E    +  + E R     E +E+ E    E  ER       ++ 
Sbjct: 296 EIEELEGEISLLRERLEELENELEELEERLE---ELKEKIEALKEELEERETLLEELEQL 352

Query: 635 RERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQ 685
                 A+ E E    A    ++      RE  A    E A       + +
Sbjct: 353 LAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELK 403

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 70.9 bits (174), Expect = 3e-12
 Identities = 41/242 (16%), Positives = 78/242 (32%), Gaps = 5/242 (2%)

Query: 452 KEAMDRAEAKFR-HAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQ--RE 508
           +E + R E +     +E+ E E  +    +  ++  REE    Q+    L  E+++   E
Sbjct: 245 EEELSRLEEELEELQEELEEAEK-EIEELKSELEELREELEELQEELLELKEEIEELEGE 303

Query: 509 KGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAA 568
               + RLE       E +ER ++  EK +    E+E+      +  +        +   
Sbjct: 304 ISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEEL 363

Query: 569 EARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARER-ANA 627
           E +L A    +++   A RE       + A+            E  E       ER  + 
Sbjct: 364 EEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDL 423

Query: 628 EAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQK 687
           +   KE        +TE E L        ++           E              ++ 
Sbjct: 424 KEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKEL 483

Query: 688 ND 689
           + 
Sbjct: 484 SS 485

Length = 1163

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 68.4 bits (168), Expect = 4e-12
 Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 16/250 (6%)

Query: 445 AASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQ-QDAQERLDRE 503
                 M+E   +A A+    +E + +E  +    R  +Q   EER  + Q+  E   +E
Sbjct: 41  RRIDEMMEEERLKALAEEE-ERERKRKE--ERREGRAVLQEQIEEREKRRQEEYEERLQE 97

Query: 504 MQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR 563
            +Q +  E   R++ E E E +EK  ++K++ +E +   E   ER + ++  +   RE  
Sbjct: 98  REQMD--EIIERIQEEDEAEAQEKREKQKKLREEIDEFNE---ERIERKEEEKEREREEE 152

Query: 564 ERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARE 623
            +     R KAER    +A    R+  E+          +E A  E  E  E  A   +E
Sbjct: 153 LKILEYQREKAEREEEREAERRERKE-EKEREVARLRAQQEEAEDEREELDELRADLYQE 211

Query: 624 RANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQ 683
               + R+KE  E     R + E LQRA    ++      +E    E R    A      
Sbjct: 212 EYERKERQKEKEEAEKRRRQKQE-LQRAREEQIEE-----KEERLQEERAEEEAERERML 265

Query: 684 NQQKNDNDLE 693
            +Q  D +LE
Sbjct: 266 EKQAEDEELE 275

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 69.4 bits (169), Expect = 9e-12
 Identities = 47/203 (23%), Positives = 95/203 (46%), Gaps = 7/203 (3%)

Query: 450  AMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREK 509
            A +  ++     +   K+M+  E+ KA  ++   +  ++    ++  ++   +E ++++K
Sbjct: 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648

Query: 510  GEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAE 569
             EE +   +  E  + +   E K+ E++K++A E +K  E  ++A E   +EA E   AE
Sbjct: 1649 AEELK---KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE 1705

Query: 570  ARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEA 629
               K E     KA    +   E     + +AE  ++ A E +++AE A  +  E+     
Sbjct: 1706 ELKKKEAEEKKKAEELKKAEEEN----KIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761

Query: 630  REKEARERASVARTEAEALQRAE 652
             +KE  ++A   R E EA+   E
Sbjct: 1762 LKKEEEKKAEEIRKEKEAVIEEE 1784

Length = 2084

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 68.9 bits (169), Expect = 9e-12
 Identities = 65/273 (23%), Positives = 100/273 (36%), Gaps = 28/273 (10%)

Query: 437 EDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDA 496
           E+   +  A +  A +   + A+     A+E+RE    +AA     ++  RE    +++ 
Sbjct: 331 EECRVAAQAHNEEA-ESLREDADDLEERAEELRE----EAAELESELEEAREAVEDRREE 385

Query: 497 QERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVE 556
            E L+ E+++  +      ++     +  E+ RE      E++  RE E E E   +   
Sbjct: 386 IEELEEEIEELRERFGDAPVDLGNAEDFLEELRE------ERDELREREAELEATLRTAR 439

Query: 557 RATREARERAAA----EARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARE 612
               EA     A    E     E +   +     RER E    +    E       E  E
Sbjct: 440 ERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLE 499

Query: 613 RAERAAAEARE-------RANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARE 665
           RAE               R + E    E RE     R  AE L+  ERAA   A +E + 
Sbjct: 500 RAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELR--ERAAELEAEAEEKR 557

Query: 666 RAAAEARERAAAAARA----NQNQQKNDNDLES 694
            AAAEA E A  A       N    +    +ES
Sbjct: 558 EAAAEAEEEAEEAREEVAELNSKLAELKERIES 590

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 68.2 bits (167), Expect = 1e-11
 Identities = 44/246 (17%), Positives = 84/246 (34%), Gaps = 9/246 (3%)

Query: 453 EAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEE 512
             ++    K     +  + E        E ++   EE   Q +  +R    +++  +  +
Sbjct: 677 AELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQ 736

Query: 513 QRR--LEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEA 570
            R   LE E E   EE E  ++R+E+ +E    +E+   K ++ +E    + +       
Sbjct: 737 SRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELE 796

Query: 571 RLKAERAAVDKANAAARERAERAAVQRAQAEAR-ERAAAEARERAERAAAEARERANAEA 629
            L+ E    ++   A     E    +R + E   E    E  E  E+      E    E 
Sbjct: 797 ELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEK 856

Query: 630 REKEARERASVARTEAEALQ------RAERAAVQRAASEARERAAAEARERAAAAARANQ 683
             +E +E       E E L+        E+  ++    E     A    E      R  +
Sbjct: 857 ELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE 916

Query: 684 NQQKND 689
            + K +
Sbjct: 917 LEAKLE 922

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 67.5 bits (164), Expect = 3e-11
 Identities = 59/246 (23%), Positives = 118/246 (47%), Gaps = 14/246 (5%)

Query: 440  ESSIAAASAAAMKEAMDRAEAKFRHAKEMR--ERESFKAARSRESVQPDREERATQQDAQ 497
            E+   A  A    EA  +AE   + A E +       KA  ++++ +  + + A + +  
Sbjct: 1474 EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEA 1533

Query: 498  ERLD--REMQQREKGEEQRRLEREREREREEKEREKKRIEKEKE---RAREIEKEREKAR 552
            ++ D  ++ ++++K +E ++ E  ++ E ++K  E K+ E++K    R  E  K+ E+AR
Sbjct: 1534 KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593

Query: 553  QAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARE 612
                    E  ++  AE   KAE A +        E  ++   Q  + EA E+  AE  +
Sbjct: 1594 IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK 1653

Query: 613  RAE-----RAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERA 667
            +AE     +AA EA++    + + +EA++     +  AEAL++    A  + A E +++ 
Sbjct: 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA--KKAEELKKKE 1711

Query: 668  AAEARE 673
            A E ++
Sbjct: 1712 AEEKKK 1717

Length = 2084

>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 66.8 bits (163), Expect = 3e-11
 Identities = 47/189 (24%), Positives = 70/189 (37%), Gaps = 9/189 (4%)

Query: 505 QQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARE 564
           +  +  ++    E E E+E E    E  R  K  E   E +   + A Q  E     A  
Sbjct: 215 RIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAET 274

Query: 565 -----RAAAEARLKAERAAVDKANAAARERAER-AAVQRAQAEARERAAAEARERAERAA 618
                   AE R +AE+A +    A   E+A+    VQ A+A           ER +   
Sbjct: 275 EAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETE 334

Query: 619 AEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAA 678
            E +ER+      +   +  + A         A+  A   A   ARE   AE  E+AA  
Sbjct: 335 LEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEA---AVETARETEEAERAEQAALV 391

Query: 679 ARANQNQQK 687
           A A   +Q+
Sbjct: 392 AAAEAAEQE 400

Length = 548

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 67.0 bits (164), Expect = 3e-11
 Identities = 44/232 (18%), Positives = 87/232 (37%), Gaps = 6/232 (2%)

Query: 451 MKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKG 510
           ++E ++  + +    KE  E    + +  RE ++    E    ++  E L  +++  ++ 
Sbjct: 279 LREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKE- 337

Query: 511 EEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEA 570
           E + R     E E+   E E+ + E E++ +  +E+  E      E       E A    
Sbjct: 338 ELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRN 397

Query: 571 RLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEAR-ERANAEA 629
            L+  +  ++       ER ER + +    +   +      E  +    E   E    E 
Sbjct: 398 ELEELKREIES----LEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEE 453

Query: 630 REKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARA 681
           + +E R+R      E   LQ   +   +  +S        EA +RA+   RA
Sbjct: 454 QLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRA 505

Length = 1163

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 66.9 bits (164), Expect = 4e-11
 Identities = 38/156 (24%), Positives = 48/156 (30%), Gaps = 1/156 (0%)

Query: 536 KEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAV 595
           KE             A  A           AA +A   A  AA  KA AA   RA  AA 
Sbjct: 56  KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115

Query: 596 QRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAA 655
             A +      A E RER E A   A  +A     +     RA  A    E  +R ER  
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEE-ERDERRR 174

Query: 656 VQRAASEARERAAAEARERAAAAARANQNQQKNDND 691
                    E    E   R       +   +++  +
Sbjct: 175 RGDREDRQAEAERGERGRREERGRDGDDRDRRDRRE 210

Length = 672

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 67.0 bits (164), Expect = 4e-11
 Identities = 47/237 (19%), Positives = 91/237 (38%), Gaps = 21/237 (8%)

Query: 438 DVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQ 497
           D +   A      ++E ++R +      ++  ER           ++ +RE+    Q   
Sbjct: 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLER-----------LRREREKAERYQALL 217

Query: 498 ERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVER 557
           +   RE +  E  +E+  LER++E    +    ++ +EK  E   E+EK  E+  Q +E 
Sbjct: 218 KEK-REYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEE 276

Query: 558 ATREARERAAAEAR--------LKAERAAVDKANAAARERAERAAVQRAQAEA-RERAAA 608
             ++ ++    E          L+AE A+++++ A      E A  + A+ EA  ++  A
Sbjct: 277 LNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLA 336

Query: 609 EARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARE 665
           E  E       E + R        E +E     R E E + +              +
Sbjct: 337 EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 65.4 bits (159), Expect = 5e-11
 Identities = 54/195 (27%), Positives = 103/195 (52%), Gaps = 9/195 (4%)

Query: 448 AAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQR 507
           ++A K    R + + + A+E++ +++ +  R ++  +   + +  Q+ A+E   +   ++
Sbjct: 72  SSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQ 131

Query: 508 EKGEEQRRLEREREREREEKEREKKRIEKEKERAR-EIEKEREKARQAVERATREARERA 566
           ++ EEQ R     ++++ E  + K   E  K +A  E +K+ E+A +A E    EA+ +A
Sbjct: 132 KQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAE----EAKAKA 187

Query: 567 AAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERAN 626
            A A  K +  A  K   AA E+A+  A  +A+AE +  AAAE +  AE+  A A+ +A+
Sbjct: 188 EAAAA-KKKAEAEAK---AAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKAD 243

Query: 627 AEAREKEARERASVA 641
             A   +A ER + A
Sbjct: 244 KAAAAAKAAERKAAA 258

Length = 387

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 66.7 bits (163), Expect = 5e-11
 Identities = 48/280 (17%), Positives = 94/280 (33%), Gaps = 18/280 (6%)

Query: 405 RSSAASQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRH 464
                 Q+ EL +           E  E+   E+++            EA++   A+   
Sbjct: 187 IEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEE 246

Query: 465 AKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERERERER 524
            KE  E    +            E  + + +A +  + E+++ E+  E+   + ER  E 
Sbjct: 247 EKERLEELKARLL----------EIESLELEALKIREEELRELERLLEELEEKIERLEEL 296

Query: 525 E-EKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKAN 583
           E E E  ++ +E  +    E+E+  EK +   ER  +   +    E+ L+      ++  
Sbjct: 297 EREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELA 356

Query: 584 AAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVART 643
               ER +    +  + E     A E  ++ E    EA +    E  E  A         
Sbjct: 357 KLLEERLKELEERLEELEKELEKALERLKQLE----EAIQELKEELAELSAALEEIQEEL 412

Query: 644 EAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQ 683
           E    +  E   ++R   E  E       +     ++   
Sbjct: 413 EELEKELEE---LERELEELEEEIKKLEEQINQLESKELM 449

Length = 908

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 66.3 bits (161), Expect = 6e-11
 Identities = 59/260 (22%), Positives = 125/260 (48%), Gaps = 8/260 (3%)

Query: 440  ESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQER 499
            E +  A  A    E   +A+   + A+E ++ +  K        + D  ++A +   +  
Sbjct: 1454 EEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAD 1513

Query: 500  LDREMQQREKGEEQRRLEREREREREEKEREKKRIEK----EKERAREIEKEREKARQAV 555
              ++ ++ +K +E ++ E  ++ +  +K  EKK+ ++    E+ +  E +K+ E+A++A 
Sbjct: 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573

Query: 556  ER---ATREARE-RAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEAR 611
            E    A R+A E + A EAR++      ++      E A++A   + +AE  ++A  E +
Sbjct: 1574 EDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633

Query: 612  ERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEA 671
            +  +    EA E+  AE  +K   E    A  EA+  +  ++ A +   +E  E+ AAEA
Sbjct: 1634 KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693

Query: 672  RERAAAAARANQNQQKNDND 691
             ++ A  A+  +  +K + +
Sbjct: 1694 LKKEAEEAKKAEELKKKEAE 1713

Length = 2084

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 65.7 bits (161), Expect = 7e-11
 Identities = 31/172 (18%), Positives = 52/172 (30%), Gaps = 5/172 (2%)

Query: 520 REREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAV 579
           +E                   AR   +    ARQA + A   A  +A A    +A  AA 
Sbjct: 56  KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115

Query: 580 DKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERAS 639
            +A +A      R   +R +A  R  A        + A     + A     E+    R  
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175

Query: 640 VARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDND 691
             R +     R   A               + R+R     + ++ +++   D
Sbjct: 176 GDRED-----RQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRD 222

Length = 672

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 66.0 bits (161), Expect = 9e-11
 Identities = 52/242 (21%), Positives = 78/242 (32%), Gaps = 18/242 (7%)

Query: 445 AASAAAMKEAMDRAEAKFRHAKEMR-ERESFKAARS----RESVQPDREERATQQDAQER 499
           AA    + E      A     + +  E     + RS             +  + +    R
Sbjct: 752 AAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELAR 811

Query: 500 LDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERAT 559
             R+        +Q R E ER+            +  + +    +    ++    +    
Sbjct: 812 AARKAAAAAAAWKQARRELERDAA-------DLDLPTDPDALEAVGLALKRFGDHLHTLE 864

Query: 560 REARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAA 619
              RE   A  R   +RA   +A + ARE AE AA  RA+A   E A+   R   E   A
Sbjct: 865 VAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEA---EEASLRLRTLEESVGA 921

Query: 620 EARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAA 679
              E     AR  E R   +    E   L  A   A +       +RA A+A     A A
Sbjct: 922 MVDE---IRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATLDERAEA 978

Query: 680 RA 681
           R 
Sbjct: 979 RD 980

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 65.9 bits (160), Expect = 1e-10
 Identities = 96/440 (21%), Positives = 181/440 (41%), Gaps = 32/440 (7%)

Query: 397  PKSTRAGTRSSAASQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMD 456
                    ++ A + + + E    S    + +   +  + E  E +   A  A   E   
Sbjct: 1051 DIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGK 1110

Query: 457  RAEAKFRHAKEMRERESFKA--ARSRESVQPDREERATQQDAQERLDREMQQREKGEEQR 514
              EA+     + +  ++ KA  AR  E  +   E R  +   +  + R+ +   K EE R
Sbjct: 1111 AEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEAR 1170

Query: 515  RLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVE----RATREARERAAAEA 570
            + E  ++ E   K  E ++ E E  +A +  K  E AR+A E       R+A +   AEA
Sbjct: 1171 KAEDAKKAEAARKAEEVRKAE-ELRKAEDARKA-EAARKAEEERKAEEARKAEDAKKAEA 1228

Query: 571  RLKAERAAVDKANAAARERAERAAVQRAQAEARERA---------AAEARERAERAAAEA 621
              KAE A  D   A   E        R   EAR            A EAR+  E   AE 
Sbjct: 1229 VKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEE 1288

Query: 622  RERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARA 681
            +++A+ EA++ E +++A  A+ +AE  ++A+ A  ++ A EA+++ A  A+++A  A +A
Sbjct: 1289 KKKAD-EAKKAEEKKKADEAKKKAEEAKKADEA--KKKAEEAKKK-ADAAKKKAEEAKKA 1344

Query: 682  NQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASSNMRK 741
             +  +            +   + A   +   +    D+  K   E  +     A    +K
Sbjct: 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK-----ADEAKKK 1399

Query: 742  ASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRRARLERHQRTQERAAKALAEKNER 801
            A       D+L      A ++  +  + + + EE+++A   + +  + + A    +K E 
Sbjct: 1400 AEEDKKKADELKK----AAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1455

Query: 802  DLQAQ--RDQAERHRIAETL 819
              +A+  + +AE  + A+  
Sbjct: 1456 AKKAEEAKKKAEEAKKADEA 1475

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 65.2 bits (158), Expect = 2e-10
 Identities = 59/265 (22%), Positives = 124/265 (46%), Gaps = 15/265 (5%)

Query: 440  ESSIAAASAAAMKEAMDRAEAKFRHAKEMRER--ESFKAARSRESVQPDREERATQQDAQ 497
            E+   A  A    EA  +AE   + A+E +++  E+ KA  +++  +  ++    ++ A+
Sbjct: 1435 EAKKKAEEAKKADEAKKKAEEA-KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493

Query: 498  ERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVER 557
            E   +  + ++  E +++ +  ++ E  +K  E K+ E E ++A E +K  EK +    +
Sbjct: 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE-EAKKADEAKKAEEKKKADELK 1552

Query: 558  ATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERA 617
               E ++    +   +A++A  DK  A  +    + A +    E  +    E + +AE A
Sbjct: 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612

Query: 618  AAEARERANAEAREKEARERASVART---------EAEALQRAERAAVQRAASEARERAA 668
                  +  AE  +K   E+  V +          +AE L++AE     +AA EA++  A
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK--A 1670

Query: 669  AEARERAAAAARANQNQQKNDNDLE 693
             E +++A  A +A ++++K    L+
Sbjct: 1671 EEDKKKAEEAKKAEEDEKKAAEALK 1695

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 64.7 bits (158), Expect = 2e-10
 Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 11/189 (5%)

Query: 501 DREMQQREKGEEQRRLERERER-EREEKEREKKRIEKEKERAREIEKEREKARQAVERAT 559
                  E+  E   LE + E  E +  E EK   E  KE   E+E+E E+ R+ +E  +
Sbjct: 667 KTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKEL-EELEEELEQLRKELEELS 725

Query: 560 REARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAA 619
           R+        ARL+AE   +        ER  + + +  + EA      E  E AE   A
Sbjct: 726 RQISALRKDLARLEAEVEQL-------EERIAQLSKELTELEAEIEELEERLEEAEEELA 778

Query: 620 EA-RERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAA 678
           EA  E    EA+ ++ +E     R   + L RAE   +   A+  RER  +  R  AA  
Sbjct: 779 EAEAEIEELEAQIEQLKEELKALREALDEL-RAELTLLNEEAANLRERLESLERRIAATE 837

Query: 679 ARANQNQQK 687
            R    +++
Sbjct: 838 RRLEDLEEQ 846

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated

 Score = 63.8 bits (155), Expect = 2e-10
 Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 30/226 (13%)

Query: 498 ERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVE- 556
           E L +E  +R K E ++RL  +   E  + E E +  EK   +  ++  E  K R A   
Sbjct: 8   EDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAA 67

Query: 557 --RATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERA 614
             +A   A+++      +  E  A  KA AAA  +A+ AA+ + + E  E    E +  A
Sbjct: 68  KAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAA 127

Query: 615 ER-AAAEARERANAEAREKEARER--------------------ASVARTEAEALQRAER 653
           +  AAA A+ +A A A++K                         A+ A+  A A Q+A  
Sbjct: 128 KAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAE 187

Query: 654 A------AVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLE 693
           A        +   ++A+ +AAA A+ +AAA A+   +Q   D+  E
Sbjct: 188 AGEGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDE 233

Length = 430

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.4 bits (157), Expect = 3e-10
 Identities = 45/228 (19%), Positives = 77/228 (33%), Gaps = 20/228 (8%)

Query: 487 REE-RATQQDAQERLDR-EMQQREKGEEQRRLEREREREREEKEREKKRIEKEKE----R 540
           +EE     +  +E L+R E    E  ++  +LER+ E+    +E + +  E E      +
Sbjct: 174 KEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAK 233

Query: 541 AREIEKEREKARQAVERATRE----ARERAAAEARLKAERAAVDKANAAARERAERAAVQ 596
            +E+ KE E+  + + R   E      E   AE  ++  ++ +++      E  E     
Sbjct: 234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL 293

Query: 597 RAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAV 656
           + + E  E   +  RER E    E  E        KE  E       E E L       +
Sbjct: 294 KEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLL 353

Query: 657 ----------QRAASEARERAAAEARERAAAAARANQNQQKNDNDLES 694
                     +   S   E             A       +  N+LE 
Sbjct: 354 AELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEE 401

Length = 1163

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 64.3 bits (157), Expect = 3e-10
 Identities = 69/257 (26%), Positives = 106/257 (41%), Gaps = 40/257 (15%)

Query: 437 EDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDA 496
           + +++ I       + E ++  E++     E  ER   +  ++RE          T+ +A
Sbjct: 190 DQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARE----------TRDEA 239

Query: 497 QERLDREMQQREKGEEQRRLERERERERE-----EKERE--KKRIEKEKERAREIEKERE 549
            E L+      E+ EE   LE E E  RE     E+ERE   + +   +ER  E+E+ER+
Sbjct: 240 DEVLEE---HEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERD 296

Query: 550 KARQAVERATREARERAAAEARLKAERAAVDKANAAARERAE--RAAVQRAQAEARERAA 607
                         + A AEA ++A R  ++  +   R+R E  R A Q    EA E   
Sbjct: 297 DLLAEAGL------DDADAEA-VEARREELEDRDEELRDRLEECRVAAQAHNEEA-ESLR 348

Query: 608 AEARERAERAAAEARERANA-EAREKEARERASVARTEAEALQ--------RAERAAVQR 658
            +A +  ERA  E RE A   E+  +EARE     R E E L+        R   A V  
Sbjct: 349 EDADDLEERAE-ELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDL 407

Query: 659 AASEARERAAAEARERA 675
             +E       E R+  
Sbjct: 408 GNAEDFLEELREERDEL 424

Length = 880

>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated

 Score = 63.1 bits (153), Expect = 3e-10
 Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 18/174 (10%)

Query: 525 EEKEREKKRIEKEKERAREIEKEREKARQAVE--RATREARERAAAEARLKAERAAVDKA 582
            EK+ E  + ++   RA+E  ++R  A+   E  +   E RE+  A  +         K 
Sbjct: 3   PEKDLEDLK-KEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKR 61

Query: 583 NAAARERAERAAVQRAQAEARERAAAEARERAER-AAAEARERANAEAREKEA------- 634
            AAA  +A+ AA+ + + E  E    E + +A+  AAA A+ +A A A++K         
Sbjct: 62  RAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTE 121

Query: 635 -------RERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARA 681
                   + A+ A+ +A AL + +R   +    E  E    +A+ +AAAAA+A
Sbjct: 122 EEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKA 175

Length = 430

>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 63.3 bits (154), Expect = 4e-10
 Identities = 57/266 (21%), Positives = 95/266 (35%), Gaps = 27/266 (10%)

Query: 440 ESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQER 499
              +      A K A    E K   A+   E  ++KA   RE+ Q +       Q+ + +
Sbjct: 247 LVELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQ 306

Query: 500 LDREMQQREKGEEQ----RRLEREREREREEKEREKKRIEKEKERAREIEKE-REKARQA 554
            ++E+Q  +  E +      +ER++E E E +ER       +++   E +          
Sbjct: 307 AEQEVQHAKALEAREMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIG 366

Query: 555 VERATR--EARERAAAEARLK-----------AERAAVDKANAAARERAERAAVQ-RAQA 600
            +       ARE   AE   +            E+  +     AA+  AE  A + +A+A
Sbjct: 367 AQAEAAVETARETEEAERAEQAALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAEIKAEA 426

Query: 601 EARERAAAEARERAERAAAEA-RERANAEAREKEARERASVARTEAEALQRAERAAVQRA 659
           EA  R   +A   A+RA AEA +   +A A E         A  +A      E A   + 
Sbjct: 427 EA-IREKGKAEAEAKRALAEAIQVLGDAAAAELFK------ALVQALPEVAEEAAQPMKN 479

Query: 660 ASEARERAAAEARERAAAAARANQNQ 685
               + R    A   + A        
Sbjct: 480 IDSEKVRVIGGANGGSTAGKVNAGGL 505

Length = 548

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.6 bits (155), Expect = 5e-10
 Identities = 50/240 (20%), Positives = 92/240 (38%), Gaps = 7/240 (2%)

Query: 437 EDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARS--RESVQPDREERATQQ 494
           E++E  + +   A  K   +  E + +      E E  +         +     E  + +
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820

Query: 495 DAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQA 554
             +ERL++E+++ E  EE   LE + +   EE E  +K +E+ KE   E+E E+E+    
Sbjct: 821 QRRERLEQEIEELE--EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDE 878

Query: 555 VERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERA 614
           ++    E  E       L++E A + +     RER E    +  + E       E  E  
Sbjct: 879 LKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEE 938

Query: 615 ERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARER 674
                E       E  E+E      V      A++  E    +    +++     EA+E+
Sbjct: 939 YEDTLETELEREIERLEEEIEALGPVNL---RAIEEYEEVEERYEELKSQREDLEEAKEK 995

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.2 bits (154), Expect = 6e-10
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 11/220 (5%)

Query: 449 AAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQRE 508
           +A+++ + R EA+    +E   + S +       ++   E     ++     + E+++ E
Sbjct: 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788

Query: 509 KGEEQRRLERERERE-----REEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR 563
              EQ + E +  RE     R E     +     +ER   +E+      + +E    +  
Sbjct: 789 AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848

Query: 564 ERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARE 623
           E +     L AE   +++         E    +RA  E          E       E   
Sbjct: 849 ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908

Query: 624 RANA------EAREKEARERASVARTEAEALQRAERAAVQ 657
           + +       E REK A+    +   E       ER + +
Sbjct: 909 KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 63.3 bits (154), Expect = 6e-10
 Identities = 62/245 (25%), Positives = 83/245 (33%), Gaps = 36/245 (14%)

Query: 476 AARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIE 535
            AR R   + D    A   D    L RE+  R  G  QR L  E      ++        
Sbjct: 738 RARLRRIAELD-ARLAAVDDELAELAREL--RALGARQRALADELAGAPSDRSLRAAH-- 792

Query: 536 KEKERAREIEKEREKARQAVERATREAR-------------ERAAAEARLKAERAAVDKA 582
               RA E E++ E A + + RA R+A              ER AA+  L  +  A++  
Sbjct: 793 ---RRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAV 849

Query: 583 NAA-------------ARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEA 629
             A             A      AA + A+  AR   A      A   AAEAR  A  EA
Sbjct: 850 GLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEA-EEA 908

Query: 630 REKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAA-ARANQNQQKN 688
             +      SV     E   R        A+        AEA   A  A  RA + + + 
Sbjct: 909 SLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEA 968

Query: 689 DNDLE 693
           D  L+
Sbjct: 969 DATLD 973

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 62.9 bits (153), Expect = 6e-10
 Identities = 79/379 (20%), Positives = 122/379 (32%), Gaps = 20/379 (5%)

Query: 444 AAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDRE 503
           AAA        M+   A+   A+E   R  FKA   R  +    + RA  + A     + 
Sbjct: 596 AAAGLPLTPAEMEDWLAERATAREQ-VRAYFKA---RAELDALLDRRARLRAALRAALKA 651

Query: 504 MQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR 563
           +     GEE   L     +  EE E++  R     ER R+ E+  E+A +  + A     
Sbjct: 652 VAIVLPGEELAELLELARQLLEEAEKQAARKASLDERLRDAERALEEAEERHDEAQSALE 711

Query: 564 ERAAAEARLKAERAAVDKANAA----ARERAERAAVQRAQAEARERAAAEARERAERAAA 619
                      E     +A+ A    A E  +    +   A+   +  A       R   
Sbjct: 712 AWQEQWYDALLEAGLGGRASPAGALDALELLQNIKEKLQAADDLRQRIAAMERDLARFEE 771

Query: 620 EARERANAEAREKEARERASVARTEAEALQRA-ERAAVQRAASEARERAAAEARERAAAA 678
           E    A A A E         AR   + L+RA + AA     +E  E A  E    AAAA
Sbjct: 772 EVEALAEAVAPEMLGTPADETARALKQRLKRARDTAAAAEKLAEEIEEAEKE-VSEAAAA 830

Query: 679 ARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASSN 738
               + +      L +    +   +      A      +    K      R         
Sbjct: 831 LDEAEAR------LTALLRAARCTTIEELLAAVERSDTYRELRKRIAALERTLVRAGGGL 884

Query: 739 MRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGE----TEERRRARLERHQRTQERAAKA 794
             +A        D   +       A + +++E E     +E   A+ E  +      A  
Sbjct: 885 SLEALVAEAAALDPDELPARLEELARDIEELEEELNELAQEVGAAKQELARMDGGSTAAE 944

Query: 795 LAEKNERDLQAQRDQAERH 813
           L  + E  L   RD AER+
Sbjct: 945 LEAERESLLAQLRDLAERY 963

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.0 bits (151), Expect = 1e-09
 Identities = 46/245 (18%), Positives = 87/245 (35%), Gaps = 25/245 (10%)

Query: 475 KAARSRESVQPDREERATQQDAQERLDREMQQ-REKGEEQRRLEREREREREEKEREKKR 533
           + A     ++   EE  + ++    L+  +++ R + EE  R   E +RE    E E ++
Sbjct: 675 ELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQ 734

Query: 534 -------IEKEKERARE----IEKEREKARQAVERATREARERAAAEARLKAERAAVDKA 582
                  +E+E E   E    +++  E+  + +E       +       L+ +R A+ + 
Sbjct: 735 LQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEE 794

Query: 583 NAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARER-ANAEAREKEARERASVA 641
                E  E A  +    E    +  + RER E+   E  E     E +  E  E     
Sbjct: 795 LEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEEL 854

Query: 642 RTEAEALQ------RAERAAVQRAASEAR------ERAAAEARERAAAAARANQNQQKND 689
             E E L+       AE+  ++    E        E    E     A      +  ++  
Sbjct: 855 EKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914

Query: 690 NDLES 694
            +LE+
Sbjct: 915 EELEA 919

Length = 1163

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 61.8 bits (151), Expect = 1e-09
 Identities = 35/215 (16%), Positives = 58/215 (26%), Gaps = 1/215 (0%)

Query: 477 ARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEK 536
                         A    A  R  R      + E+        + E     R       
Sbjct: 57  EARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAA 116

Query: 537 EKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQ 596
           E   A E   +  + R+  E A R A  +A       A  A  D A     E  +    +
Sbjct: 117 EAASAPE-AAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175

Query: 597 RAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAV 656
             + + +  A    R R E    +  +R   + RE+  R      R   +   R  R   
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235

Query: 657 QRAASEARERAAAEARERAAAAARANQNQQKNDND 691
           + A  +       +            + ++  D D
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRD 270

Length = 672

>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated

 Score = 61.5 bits (149), Expect = 1e-09
 Identities = 65/243 (26%), Positives = 103/243 (42%), Gaps = 22/243 (9%)

Query: 459 EAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLER 518
           EA  R  +E R+R   K       ++ +  E+       + +  E  +R      +    
Sbjct: 13  EAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKAKAA 72

Query: 519 EREREREEKEREKKRIEKEKERAREIEKEREKA---RQAVERATREARERAAAEARLKAE 575
              +++ E   E    EK K +A+     + KA    +     T E  E   A A+ KA 
Sbjct: 73  ALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAA 132

Query: 576 RAAVDKANAAARERAERA--------------AVQRAQAEARERAAAEARERAERAAA-- 619
            AA  KA A A+++ E                A  +A A A+ +AAA A+++A  A    
Sbjct: 133 AAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGT 192

Query: 620 -EARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAA 678
            E  E   A+A+ K A   A+ A+  A A Q+A +        +A+ +A A A+ +AAAA
Sbjct: 193 EEVTEEEKAKAKAKAAA--AAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAA 250

Query: 679 ARA 681
           ARA
Sbjct: 251 ARA 253

Length = 430

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 60.3 bits (147), Expect = 2e-09
 Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 7/195 (3%)

Query: 449 AAMKEAMDRAEAK-FRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQR 507
              KE     E K   + +E  ERE  + A  RE  +    E A  +  QE  + E ++ 
Sbjct: 142 EEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREEL 201

Query: 508 E----KGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERA-TREA 562
           +       ++    +ER++E+EE E+ ++R ++E +RARE + E ++ R   ERA     
Sbjct: 202 DELRADLYQEEYERKERQKEKEEAEK-RRRQKQELQRAREEQIEEKEERLQEERAEEEAE 260

Query: 563 RERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEAR 622
           RER   +     E    +      +    R  +++   E  ER AAE  E  E       
Sbjct: 261 RERMLEKQAEDEELEQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLRE 320

Query: 623 ERANAEAREKEARER 637
           E A  +AR +E R+R
Sbjct: 321 EEAERQARIEEERQR 335

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 61.6 bits (150), Expect = 2e-09
 Identities = 45/211 (21%), Positives = 86/211 (40%), Gaps = 4/211 (1%)

Query: 486 DREERATQQDAQERLDREMQQREKGEEQ-RRLEREREREREEKEREKKRIEKEKERAREI 544
             +  ++  + +  ++   ++ E+ EE+   LE+     R+E E  ++ +E+ ++   E+
Sbjct: 665 SAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL 724

Query: 545 EKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEA-R 603
            ++    R+ + R   E  +     A+L  E   ++       ER E A  + A+AEA  
Sbjct: 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784

Query: 604 ERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEA 663
           E   A+  +  E   A         A      E A+  R   E+L+R   A  +R   E 
Sbjct: 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL--ED 842

Query: 664 RERAAAEARERAAAAARANQNQQKNDNDLES 694
            E    E  E   + A   +  ++   +LES
Sbjct: 843 LEEQIEELSEDIESLAAEIEELEELIEELES 873

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 61.2 bits (149), Expect = 2e-09
 Identities = 42/216 (19%), Positives = 82/216 (37%), Gaps = 9/216 (4%)

Query: 443 IAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDR 502
           I     A ++  ++  EA+    +   +  + + A   E ++  +EE  + +   E L+ 
Sbjct: 306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365

Query: 503 EMQQREKGEEQRRLERERER-EREEKEREKKRIEKEKERAREIEKEREKARQAVERATRE 561
           E+++ E   E+   + E  R +  + E +   +  E ER  E   ER + R+   +   E
Sbjct: 366 ELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL-EARLERLEDRRERLQQEIE 424

Query: 562 ARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEA 621
              +   EA LK  +A +++      E  E       + E       E  E AE+A   A
Sbjct: 425 ELLKKLEEAELKELQAELEELEEELEELQEE----LERLEEALEELREELEEAEQALDAA 480

Query: 622 RERANAEAREKEARERASVARTEAEALQRAERAAVQ 657
                      ++ ER    +   E      +A ++
Sbjct: 481 ERELAQLQARLDSLER---LQENLEGFSEGVKALLK 513

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 61.2 bits (149), Expect = 2e-09
 Identities = 76/260 (29%), Positives = 103/260 (39%), Gaps = 33/260 (12%)

Query: 437 EDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDA 496
           E++E  I           +D   A+    +   ER+     R RE+     E  AT + A
Sbjct: 387 EELEEEIEELRERFGDAPVDLGNAEDFLEELREERD---ELREREA-----ELEATLRTA 438

Query: 497 QERLDREMQQREKG---------EEQRRLEREREREREEKEREKKRIEKEKERAREIEKE 547
           +ER++      E G         E    +E   E  RE  E  +  +E  +E   E+E+ 
Sbjct: 439 RERVEEAEALLEAGKCPECGQPVEGSPHVETIEED-RERVEELEAELEDLEEEVEEVEER 497

Query: 548 REKARQAVE---RATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARE 604
            E+A   VE   R  R    R   E  +   R  +++    A E  ERAA   A+AE + 
Sbjct: 498 LERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKR 557

Query: 605 RAAAEARERAERAAAEARE-----RANAEAREKEARERASVARTEAEALQRAERAAVQRA 659
            AAAEA E AE A  E  E         E  E   R R  +A    +A    ER   +R 
Sbjct: 558 EAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIA-DAEDEIERLREKRE 616

Query: 660 A-----SEARERAAAEARER 674
           A      E RER  AE RER
Sbjct: 617 ALAELNDERRER-LAEKRER 635

Length = 880

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 61.2 bits (149), Expect = 2e-09
 Identities = 72/247 (29%), Positives = 99/247 (40%), Gaps = 42/247 (17%)

Query: 467 EMRERESFKAARSRESVQPDREERATQQDAQ----------ERLDREMQQR-EKGEEQRR 515
           E RER S  A    E V  D+     Q  AQ          ERL+    +  E  EE  R
Sbjct: 166 EYRERAS-DARLGVERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIER 224

Query: 516 LEREREREREEKEREKKRIEKEKERAREI-----------------EKEREKARQAVERA 558
            E +RE+ RE ++   + +E+ +ER  E+                 E+ERE+  + V R 
Sbjct: 225 YEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEV-RD 283

Query: 559 TREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARER------AAAEARE 612
            RE  E    E       A +D A+A A E A R  ++    E R+R      AA    E
Sbjct: 284 LRERLEELEEERDDLLAEAGLDDADAEAVE-ARREELEDRDEELRDRLEECRVAAQAHNE 342

Query: 613 RAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEAR 672
            AE    +A +    E R +E RE A+   +E E  + A     +R   E  E    E R
Sbjct: 343 EAESLREDADDL---EERAEELREEAAELESELEEAREAVED--RREEIEELEEEIEELR 397

Query: 673 ERAAAAA 679
           ER   A 
Sbjct: 398 ERFGDAP 404

Length = 880

>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 60.2 bits (146), Expect = 3e-09
 Identities = 50/227 (22%), Positives = 79/227 (34%), Gaps = 28/227 (12%)

Query: 477 ARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERERERE------REEKERE 530
            R    V  D E    + + +  +       E   + + +E E E++       + +E +
Sbjct: 213 RRRIAQVLQDAEIAENEAEKETEIAI----AEANRDAKLVELEVEQQPAGKTAEQTREVK 268

Query: 531 KKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARL---------------KAE 575
               E E E A    + R +A QA   A +  +E  A   +                  E
Sbjct: 269 IILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIE 328

Query: 576 RAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEAR 635
           R    +     R     AA ++AQ EA+  A       A+  AA    R   E  E E  
Sbjct: 329 RQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETAR---ETEEAERA 385

Query: 636 ERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARAN 682
           E+A++      A Q     AV+  A++A   A A   +  A A R  
Sbjct: 386 EQAALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAEIKAEAEAIREK 432

Length = 548

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 60.8 bits (148), Expect = 3e-09
 Identities = 56/209 (26%), Positives = 85/209 (40%), Gaps = 23/209 (11%)

Query: 476 AARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIE 535
               RE V+    E    ++  E ++  +   E+ E+    E   ER  E +E  ++ I 
Sbjct: 470 IEEDRERVEELEAELEDLEEEVEEVEERL---ERAEDLVEAEDRIERLEERREDLEELIA 526

Query: 536 KEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAV 595
           + +E    IE++RE+A +  ERA         AEA  K E A      A A E AE A  
Sbjct: 527 ERRET---IEEKRERAEELRERA-----AELEAEAEEKREAA------AEAEEEAEEARE 572

Query: 596 QRAQAEARERAAAEARERAERAAAEARERANAEAREKEARER----ASVARTEAEALQ-- 649
           + A+  ++     E  E  ER        A+AE   +  RE+    A +     E L   
Sbjct: 573 EVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEK 632

Query: 650 RAERAAVQRAASEARERAAAEARERAAAA 678
           R  +  ++    EAR   A E +ERA   
Sbjct: 633 RERKRELEAEFDEARIEEAREDKERAEEY 661

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 60.9 bits (148), Expect = 3e-09
 Identities = 54/251 (21%), Positives = 89/251 (35%), Gaps = 17/251 (6%)

Query: 457 RAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLD-REMQQREKGEEQRR 515
               K    +   + E  +   S      +    A +++ +E     E+Q+ ++ EE  +
Sbjct: 173 SELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQ 232

Query: 516 LEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAE 575
                E    E E EK+R+E+ K R  EIE    +A +  E   RE  ER   E   K E
Sbjct: 233 EIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRE-LERLLEELEEKIE 291

Query: 576 R-AAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAA----------AEARER 624
           R   +++      E  E       + E          ER E+             E  E 
Sbjct: 292 RLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEE 351

Query: 625 ANAEAREKEARERASVARTEAEALQRAERAA--VQRAASEARERAAAEARERAAAAARAN 682
            N  A+  E R +        E L++    A    +   EA +    E  E +AA     
Sbjct: 352 KNELAKLLEERLKE--LEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQ 409

Query: 683 QNQQKNDNDLE 693
           +  ++ + +LE
Sbjct: 410 EELEELEKELE 420

Length = 908

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 60.5 bits (147), Expect = 4e-09
 Identities = 58/279 (20%), Positives = 90/279 (32%), Gaps = 34/279 (12%)

Query: 428 NEYGEVPS-PEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPD 486
              GEV   P D       A A       +   A+          E+ +A    + +  D
Sbjct: 228 AALGEVIDLPPDAVERYEEARA-------ELRAARRNLELLTERLEALQAEL--DEISLD 278

Query: 487 REERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRI------------ 534
            E  A     +    +  + R   ++    E E    RE       +I            
Sbjct: 279 EELLAQAAAIEALHQQRGEYRNAEQDLPDREGEIANAREAAAALLAQIGPDADEEAVESL 338

Query: 535 ---EKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAE 591
                 KE   E+EK +E   QA++ A     ER     +++A+ AA+         RA 
Sbjct: 339 RPSLAAKETVTELEKRKEALDQALKSARDALEERERELKQVRAQLAALPTVTVPEPLRAA 398

Query: 592 RAAVQRA-QAEARERAAAEARERAERAAAEARERANAEAREKEA--------RERASVAR 642
            A   RA   +A   A  +    A+R  A+A  R      + E          E+     
Sbjct: 399 LADALRAGDIDAALAALEQEVAVAKRELAQALSRLGLWRGDLEELVALPVPSAEQVQAFL 458

Query: 643 TEAEALQRAERAAVQRAASEARERAAAEARERAAAAARA 681
            EAE + +A+R    R      +    E + R   AA A
Sbjct: 459 KEAEEIMQAKRQKRDRLLELEEDLETLELQLRHLDAAGA 497

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.1 bits (146), Expect = 5e-09
 Identities = 36/233 (15%), Positives = 72/233 (30%), Gaps = 9/233 (3%)

Query: 469 RERESFKAARSRESVQPDREERATQQDAQERLDREMQQ--REKGEEQRRLEREREREREE 526
           R RE  +     E ++    E         +   E+++   +  +E   L R+    R++
Sbjct: 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734

Query: 527 KEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAA 586
             R +  +E+ +ER  ++ KE  +    +E       E     A  +AE   ++      
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794

Query: 587 RERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAE 646
           +E  +  A++ A  E R        E A              A E+   +        +E
Sbjct: 795 KEELK--ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852

Query: 647 ALQRAERA-----AVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLES 694
            ++           +        E    E      A A      ++   +L  
Sbjct: 853 DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 60.2 bits (146), Expect = 5e-09
 Identities = 55/240 (22%), Positives = 91/240 (37%), Gaps = 6/240 (2%)

Query: 444 AAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQ-ERLDR 502
            +      ++ ++ A  + R      E    +A   R  ++  +   A Q   + ER   
Sbjct: 281 LSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARA 340

Query: 503 EM-QQREKGEEQRRLERERE-REREEKEREKKRIEKEKERAREIEKEREKARQAVERATR 560
           +    +    + R+  RE E R  EE+ R  +   +  +  RE+   RE+  +A ERA  
Sbjct: 341 DAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAGL 400

Query: 561 EARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAE 620
                A  +A L A+      A  A R+ A+R   QR++  A  R   +  +RAE   A 
Sbjct: 401 SPAHTAEPDAALAAQELQELGALDARRQDADRVIAQRSEQVALLRRRDDVADRAEATHAA 460

Query: 621 A---RERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAA 677
           A   R+  + EA +  AR   +      E  + A   A Q    E    A  +     A 
Sbjct: 461 ARARRDELDEEAEQAAARAELADEAVHREGARLAWVDAWQAQLRELTILAVDDQPGALAD 520

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.7 bits (145), Expect = 6e-09
 Identities = 44/241 (18%), Positives = 85/241 (35%), Gaps = 13/241 (5%)

Query: 437 EDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDA 496
           E ++S +        +   +  E + R  +   E ES + A ++   + +  E   Q   
Sbjct: 733 EQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQ 792

Query: 497 QERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVE 556
           +E  + E +  E       LERE E   + +ER ++ IE+ +E   E+E++ ++  + +E
Sbjct: 793 EELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELE 852

Query: 557 RATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAER 616
              +E  E       L+AE+  ++       E       ++ + E   R         + 
Sbjct: 853 ELEKELEELKEELEELEAEKEELEDELKELEE-------EKEELEEELRELESELAELKE 905

Query: 617 AAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAA 676
              + RER        E   +      E   L+       +       ER      E   
Sbjct: 906 EIEKLRERLE------ELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIE 959

Query: 677 A 677
           A
Sbjct: 960 A 960

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.3 bits (144), Expect = 8e-09
 Identities = 41/242 (16%), Positives = 72/242 (29%), Gaps = 20/242 (8%)

Query: 438 DVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESF---KAARSRESVQPDREERATQQ 494
             E          +KE ++  E +    +E  E       +     E ++   E    + 
Sbjct: 280 REELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEEL 339

Query: 495 DAQERLDREMQQREKG-------EEQRRLEREREREREEKEREKKRIEKEKERAREIEKE 547
           + +E L  E++Q            E++             E  ++  E  +E   E+E E
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSAL--------LEELEELFEALREELAELEAE 391

Query: 548 REKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAA 607
             + R  +E   RE         RL      + +         E    +  +        
Sbjct: 392 LAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEEL 451

Query: 608 AEARERAERAAAEA-RERANAEAREKEARERASVARTEAEALQRAERA-AVQRAASEARE 665
            E  E       E  RE A  +   +   +  S      + L+  +RA    RA  EA E
Sbjct: 452 EEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALE 511

Query: 666 RA 667
             
Sbjct: 512 SG 513

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 59.3 bits (144), Expect = 9e-09
 Identities = 61/339 (17%), Positives = 119/339 (35%), Gaps = 57/339 (16%)

Query: 495 DAQERLDR-EMQQREKGEEQRRLERERE-----REREEKEREKK------RIEKEKERAR 542
             +E LDR E    E   + + LER+ E     +E + + RE +      R+E+ +E   
Sbjct: 183 RTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELE 242

Query: 543 EIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEA 602
           E+++E ++A + +E  T E +E       L+ E + +++     ++     A + ++ E 
Sbjct: 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ 302

Query: 603 RERAAAEARERAERAAAEA-RERANAEAREKEARERASVARTEAEALQ--------RAER 653
           +++   E     ER   E   +    E++  E  E  +    + E L+          E 
Sbjct: 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEE 362

Query: 654 AAVQRAASEARERAAAEARERAAAA-ARANQNQQKNDNDLESFFSMSSRPSSAPRPRANT 712
              +    E+R     E  E   +  A+        +N++E    + +R       R   
Sbjct: 363 LEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE---RLEARLERLEDRRERL 419

Query: 713 SDSLFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGE 772
              + +   K   E A    + A     +                              E
Sbjct: 420 QQEIEELLKK--LEEAELKELQAELEELE------------------------------E 447

Query: 773 TEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAE 811
             E  +  LER +   E   + L E  +    A+R+ A+
Sbjct: 448 ELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 40/145 (27%), Positives = 76/145 (52%), Gaps = 11/145 (7%)

Query: 543 EIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEA 602
            + ++  + +Q  + A ++ +ER     +   E     +   AA +  ++   QRA AE 
Sbjct: 47  AVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEA----EKQRAAEQARQKELEQRAAAEK 102

Query: 603 RERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASE 662
             + A +A +      AE +++   EA+ K+A E  + A  EAEA ++A+  A ++A  E
Sbjct: 103 AAKQAEQAAK-----QAEEKQKQAEEAKAKQAAEAKAKA--EAEAEKKAKEEAKKQAEEE 155

Query: 663 ARERAAAEARERAAAAARANQNQQK 687
           A+ +AAAEA+++AA A +  + + K
Sbjct: 156 AKAKAAAEAKKKAAEAKKKAEAEAK 180

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 58.6 bits (142), Expect = 1e-08
 Identities = 45/243 (18%), Positives = 94/243 (38%), Gaps = 3/243 (1%)

Query: 440 ESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQER 499
           +        AA++E +++ +++    +E  E    +    +E ++   EE  + ++A  +
Sbjct: 717 QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAK 776

Query: 500 LDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERAT 559
           L  + +  E  E+++ L+ E E   EE E  ++R++  +     +E+ RE+  Q +E   
Sbjct: 777 L--KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834

Query: 560 REARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAA 619
            E  E       L+ E   ++K     +E  E    ++ + E   +   E +E  E    
Sbjct: 835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELR 894

Query: 620 EAR-ERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAA 678
           E   E A  +   ++ RER      + E L+       +    E  +    E        
Sbjct: 895 ELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERL 954

Query: 679 ARA 681
              
Sbjct: 955 EEE 957

Length = 1163

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 58.3 bits (142), Expect = 1e-08
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 11/162 (6%)

Query: 517 EREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR-ERAAAEARLKAE 575
           E E +R  EE ++E + I+KE     E ++E  K R   E+  RE R E    E RL  +
Sbjct: 37  EEEAKRILEEAKKEAEAIKKEALL--EAKEEIHKLRNEFEKELRERRNELQKLEKRLLQK 94

Query: 576 RAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEAR---ERANAEAREK 632
              +D+      +R E    +  + E +++   +  E  E    E     ER +    E 
Sbjct: 95  EENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE- 153

Query: 633 EARERASVARTEAEALQRAERAA-VQRAASEARERAAAEARE 673
           EA+E   + + E EA  R E A  ++    EA+E A  +A+E
Sbjct: 154 EAKEIL-LEKVEEEA--RHEAAVLIKEIEEEAKEEADKKAKE 192

Length = 520

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 57.9 bits (140), Expect = 2e-08
 Identities = 63/288 (21%), Positives = 95/288 (32%), Gaps = 31/288 (10%)

Query: 434  PSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQ 493
            PS   + ++   A+ A  +      E      K      ++K AR          +  T 
Sbjct: 783  PSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTD 842

Query: 494  QDAQERLDREMQQ------------REKGEEQRRLERERERERE--------EKEREKKR 533
             DA E +   +++            RE      R   +R R            ++  + R
Sbjct: 843  PDALEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEAR 902

Query: 534  IEKEKERAREIEKEREKARQAVERATREARERAAAEA------RLKAERAAVDKANA-AA 586
             E E+   R    E        E   R A  RAA  +      RL    A  ++A   A 
Sbjct: 903  AEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAE 962

Query: 587  RERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAE 646
             +RAE  A    +AEAR+ A  + RE A     E     + E  E +A+     A   A 
Sbjct: 963  EKRAEADATLDERAEARDHAIGQLREFALTGLLEDALP-DTEVPELDAKWTIEAALKVAR 1021

Query: 647  --ALQRAERAAVQRAASEARERAAAEARE-RAAAAARANQNQQKNDND 691
                   + A    A   A  R + E  E R   AA  +  Q +  +D
Sbjct: 1022 RTEAALLQVADDDEALDRAANRISEEYLELRRTLAALGDDAQMEPADD 1069

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 57.4 bits (139), Expect = 2e-08
 Identities = 49/228 (21%), Positives = 86/228 (37%), Gaps = 33/228 (14%)

Query: 489 ERATQQDAQERLDREMQQREKGEEQRRLERER---EREREEKEREKKRIEK--EKERARE 543
           +   QQD + +L+++++  E   E   LE +      + ++  ++   +         +E
Sbjct: 53  KIREQQDQRAKLEKQLKSLET--EIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110

Query: 544 IEKEREKARQ--AVERATRE-------ARERAAAEARLKA----------------ERAA 578
            E+ R  A Q  A++R+ R        + E A    RL                  +   
Sbjct: 111 REQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATL 170

Query: 579 VDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERA 638
              A   A   AE+A +    +E R + A  A+   ER    A+  +   A +K+  E  
Sbjct: 171 KQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELR 230

Query: 639 SVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQ 686
           +        +  AE AA +   + A   A A AR RAA A R  +  +
Sbjct: 231 ANESRLKNEIASAEAAAAKAREAAAAAEA-AAARARAAEAKRTGETYK 277

Length = 420

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 57.6 bits (139), Expect = 2e-08
 Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 5/237 (2%)

Query: 444 AAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDRE 503
           A A  A  K + D A  +             K A+  ++     EE+  +Q  +E+  ++
Sbjct: 62  ALAKCAESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKK 121

Query: 504 MQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR 563
            + +E+  + R+ + E + +R  KE+EK   EKEK+     ++E EK R+ V   +R  +
Sbjct: 122 EKPKEE-PKDRKPKEEAKEKRPPKEKEK---EKEKKVEEPRDREEEKKRERVRAKSRPKK 177

Query: 564 ERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARE 623
                    K E    +K   AARE  +    +    E RE+   +  +  E   +   E
Sbjct: 178 PPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREK-EEDDGKDRETTTSPMEE 236

Query: 624 RANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAAR 680
             + ++ E   R  +S+ + +      +         +E R R +        A+AR
Sbjct: 237 DESRQSSEISRRSSSSLKKPDPSPSMASPETRESSKRTETRPRTSLRPPSARPASAR 293

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|235903 PRK06991, PRK06991, ferredoxin; Provisional

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 40/134 (29%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 566 AAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERA 625
              E       +      A AR  A +A ++R +  A  RAAA A   A  AAAEA   A
Sbjct: 137 VTGERTGWDAWSQAQADAARARHDARQARLRREREAAEARAAARAAASAAAAAAEASAAA 196

Query: 626 NAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERA---------AAEARERAA 676
              A + EA++RA +A     A ++ E  A Q A  +  E           AAEAR +  
Sbjct: 197 APAADDAEAKKRAIIAAALERARKKKEELAAQGAGPKNTEGVSAAVQAQIDAAEARRKRL 256

Query: 677 AAARANQNQQKNDN 690
           A  R   +    D 
Sbjct: 257 AEQRDAPDDANADG 270

Length = 270

>gnl|CDD|222405 pfam13830, DUF4192, Domain of unknown function (DUF4192)

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 36/136 (26%), Positives = 40/136 (29%), Gaps = 7/136 (5%)

Query: 551 ARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEA 610
           A  AV         RA  EAR      A  +  AAA + A RA   R        A    
Sbjct: 140 AAAAVLAGRVPLLSRADLEARFAPPPGAAAERLAAALDAAARARDARLARLPARGAVRAL 199

Query: 611 RERAERAAAEARERANAEAREKEARERASVA------RTEAEALQRAERAAVQRAASEAR 664
           R     A   A  R  A     +  E A +A      R    AL  A  A    A     
Sbjct: 200 RRALADALTAAAARVAAGEALPDDDEAARLAAALTDVRVRDAALALAVGANADAAERLWL 259

Query: 665 ERAA-AEARERAAAAA 679
             A       RAAA  
Sbjct: 260 AVARRLPGPYRAAALT 275

Length = 321

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 57.4 bits (139), Expect = 3e-08
 Identities = 52/241 (21%), Positives = 101/241 (41%), Gaps = 25/241 (10%)

Query: 466 KEMRERESFKAARSRESVQPDRE----ERATQQDAQERLDREMQQREK--GEEQRRLERE 519
           KE RE E ++  + +E+++  +E    + A+ ++  E+L  E+ + EK   E ++ LE  
Sbjct: 218 KEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEEL 277

Query: 520 REREREEKEREKKRIEKEKERAREIEKEREKARQAVERATRE----ARERAAAEARLKAE 575
            ++ ++  E E+ R+   KE+  E+E E     +++    RE        A  EA +   
Sbjct: 278 NKKIKDLGEEEQLRV---KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL 334

Query: 576 RAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEARE--KE 633
            A +++         E    +R +    E A  +      RA  E  ++  AE R+  K+
Sbjct: 335 LAEIEE----LEREIEEERKRRDKLTE-EYAELKEELEDLRAELEEVDKEFAETRDELKD 389

Query: 634 ARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLE 693
            RE+    + E   L+R      +       +R + E  +  AA A       + + + E
Sbjct: 390 YREKLEKLKREINELKRELDRLQEEL-----QRLSEELADLNAAIAGIEAKINELEEEKE 444

Query: 694 S 694
            
Sbjct: 445 D 445

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 57.0 bits (138), Expect = 4e-08
 Identities = 57/230 (24%), Positives = 77/230 (33%), Gaps = 29/230 (12%)

Query: 469 RERESFK-AARSRESVQPDREERATQQDAQERLDR------EMQQREKGEEQRRLERERE 521
           RERE      R       + EE      A+  LD       E ++ E  +    L    E
Sbjct: 272 REREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLE 331

Query: 522 REREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDK 581
             R   +   +  E  +E A ++E+  E+ R+       E  E   A    + E   +++
Sbjct: 332 ECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEE 391

Query: 582 ANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARER-ANAEAREKEARERASV 640
                RER   A V    AE       E R+       E RER A  EA  + ARER   
Sbjct: 392 EIEELRERFGDAPVDLGNAEDFLEELREERD-------ELREREAELEATLRTARER--- 441

Query: 641 ARTEAEALQRA----------ERAAVQRAASEARERAAAEARERAAAAAR 680
              EAEAL  A          E +       E RER      E       
Sbjct: 442 -VEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEE 490

Length = 880

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 57.1 bits (138), Expect = 4e-08
 Identities = 58/239 (24%), Positives = 83/239 (34%), Gaps = 27/239 (11%)

Query: 457 RAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDRE------------- 503
           R   + R A+   ++ S    R+R+ ++  REE        E L+RE             
Sbjct: 266 RRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQG 325

Query: 504 ---MQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATR 560
               Q  E+ E  R      +    +  +  +  E   E  R    E        ER  R
Sbjct: 326 SPAYQDAEELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELR 385

Query: 561 EARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAE 620
            ARE+ A  A    ERA +  A       AE  A   AQ      A    R+ A+R  A+
Sbjct: 386 AAREQLARAA----ERAGLSPA-----HTAEPDAALAAQELQELGALDARRQDADRVIAQ 436

Query: 621 ARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAA 679
             E+     R  +  +RA    T A A  R +    +   + AR   A EA  R  A  
Sbjct: 437 RSEQVALLRRRDDVADRAE--ATHAAARARRDELDEEAEQAAARAELADEAVHREGARL 493

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 57.1 bits (138), Expect = 4e-08
 Identities = 45/218 (20%), Positives = 72/218 (33%), Gaps = 14/218 (6%)

Query: 489 ERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKER 548
           E  + +  +E   R ++Q EK  E   L     RE  + +     +        +   ER
Sbjct: 555 ELQSLRQQEEAARRRLEQLEKELEVLELALAALREAWQAQWAAAGLPLTPAEMEDWLAER 614

Query: 549 EKAR---QAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARER 605
             AR   +A  +A  E        ARL+A   A  KA A      E A +      AR+ 
Sbjct: 615 ATAREQVRAYFKARAELDALLDRRARLRAALRAALKAVAIVLPGEELAELLEL---ARQL 671

Query: 606 AAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARE 665
                ++ A +A+ + R R    A E+                ++   A ++        
Sbjct: 672 LEEAEKQAARKASLDERLRDAERALEEAEERHDEAQSALEAWQEQWYDALLEAGLGGRAS 731

Query: 666 RAAAEA--------RERAAAAARANQNQQKNDNDLESF 695
            A A          +E+  AA    Q     + DL  F
Sbjct: 732 PAGALDALELLQNIKEKLQAADDLRQRIAAMERDLARF 769

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 57.1 bits (138), Expect = 4e-08
 Identities = 47/249 (18%), Positives = 77/249 (30%), Gaps = 11/249 (4%)

Query: 439 VESSIAAASAAAMKEAMDRAEAKFRHAKEMRERES---FKAARSRESVQ--PDREERATQ 493
           +    + A A    E +   + K + A ++R+R +      AR  E V+   +       
Sbjct: 726 LGGRASPAGALDALELLQNIKEKLQAADDLRQRIAAMERDLARFEEEVEALAEAVAPEML 785

Query: 494 QDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQ 553
               +   R ++QR K           E+  EE E  +K + +      E E       +
Sbjct: 786 GTPADETARALKQRLKRARDT--AAAAEKLAEEIEEAEKEVSEAAAALDEAEARLTALLR 843

Query: 554 AVERATREARERAAAEA-RLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARE 612
           A    T E    A   +   +  R  +                   +A   E AA +  E
Sbjct: 844 AARCTTIEELLAAVERSDTYRELRKRIAALERTL---VRAGGGLSLEALVAEAAALDPDE 900

Query: 613 RAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEAR 672
              R    AR+    E    E  +    A+ E   +     AA   A  E+      +  
Sbjct: 901 LPARLEELARDIEELEEELNELAQEVGAAKQELARMDGGSTAAELEAERESLLAQLRDLA 960

Query: 673 ERAAAAARA 681
           ER    A A
Sbjct: 961 ERYLELALA 969

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|235903 PRK06991, PRK06991, ferredoxin; Provisional

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 43/137 (31%), Positives = 53/137 (38%), Gaps = 22/137 (16%)

Query: 546 KEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARER 605
           + R  ARQA     R  RER AAEAR  A  AA           A  AA + + A A   
Sbjct: 156 RARHDARQA-----RLRREREAAEARAAARAAA----------SAAAAAAEASAAAAPAA 200

Query: 606 AAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARE 665
             AEA++RA  AAA  R R   E    +     +     A           Q  A+EAR 
Sbjct: 201 DDAEAKKRAIIAAALERARKKKEELAAQGAGPKNTEGVSAA-------VQAQIDAAEARR 253

Query: 666 RAAAEARERAAAAARAN 682
           +  AE R+    A    
Sbjct: 254 KRLAEQRDAPDDANADG 270

Length = 270

>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional

 Score = 56.5 bits (137), Expect = 5e-08
 Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 40/241 (16%)

Query: 443 IAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDR 502
           + A  AAA +  + +A A+  ++  +  RE+ KA          R  +A +Q A     +
Sbjct: 495 VKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQA--------RARQAEKQAAAAADPK 546

Query: 503 EMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREA 562
                 K      + R          + KK  ++      E E + +KA           
Sbjct: 547 ------KAAVAAAIAR---------AKAKKAAQQAANAEAEEEVDPKKAAV--------- 582

Query: 563 RERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEAR 622
              AAA AR KA++AA   A+A   E+      ++A       AAA AR +A++A  +A 
Sbjct: 583 ---AAAIARAKAKKAAQQAASAEPEEQVAEVDPKKAAV-----AAAIARAKAKKAEQQAN 634

Query: 623 ERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARAN 682
                    ++A   A++AR +A    + +  A    A + ++ A A A  RA A   A 
Sbjct: 635 AEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEEAEDPKKAAVAAAIARAKAKKAAQ 694

Query: 683 Q 683
           Q
Sbjct: 695 Q 695

Length = 695

>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated

 Score = 56.1 bits (135), Expect = 5e-08
 Identities = 58/238 (24%), Positives = 99/238 (41%), Gaps = 9/238 (3%)

Query: 448 AAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQR 507
           A    + M   EAK R A   + + +  A + RE  +   EE   +  A+         +
Sbjct: 47  ALPKNDDMTIEEAKRRAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKA----AAAAK 102

Query: 508 EKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAA 567
            K     + +RE   E  E+E+   + +       +     ++ R+  E  T E  E   
Sbjct: 103 AKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDK 162

Query: 568 AEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANA 627
            +A+ KA  AA  KA A A+++A  A     +    E+A A+A+     AAA A+ +A A
Sbjct: 163 EKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAK-----AAAAAKAKAAA 217

Query: 628 EAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQ 685
            A++K ++        +A+A   A   A   AA+ A+ + A   +E        + NQ
Sbjct: 218 LAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAAARAKTKGAEGKKEEEPKQEEPSVNQ 275

Length = 430

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 56.6 bits (137), Expect = 6e-08
 Identities = 38/230 (16%), Positives = 75/230 (32%), Gaps = 11/230 (4%)

Query: 466 KEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERERERERE 525
            E+RE E        + ++    E   ++ ++   + E  Q E  E ++ +E  +    E
Sbjct: 220 AELRELELALLLAKLKELR-KELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEE 278

Query: 526 -EKEREKK-----RIEKEKERA-REIEKEREKARQAVERATREARERAAAEARLKAERAA 578
             +E E+       +++E E    EI   RE+  +               + +++A +  
Sbjct: 279 LREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEE 338

Query: 579 VDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEA--RE 636
           +++      E  +  A      E  E   +   E  E      RE       E      E
Sbjct: 339 LEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNE 398

Query: 637 RASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQ 686
              + R      +R ER + +    +  E    EA            N++
Sbjct: 399 LEELKREIESLEERLERLSERLEDLK-EELKELEAELEELQTELEELNEE 447

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 56.2 bits (136), Expect = 8e-08
 Identities = 40/260 (15%), Positives = 83/260 (31%), Gaps = 21/260 (8%)

Query: 445 AASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREM 504
                   E + R  +  +      E    + ++        R+    +++ ++    E 
Sbjct: 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDAS--RKIGEIEKEIEQLEQEEE 733

Query: 505 QQREKGEEQRRLEREREREREEKEREKKRIEKEKERARE-IEKEREK--------ARQAV 555
           + +E+ EE        E+E E  + E K +E   E   E + K  E         +   +
Sbjct: 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI 793

Query: 556 ERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAE 615
                E  +     +R++A    +++         +    +  Q    +R   + + ++ 
Sbjct: 794 PEIQAELSKLEEEVSRIEARLREIEQK-LNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852

Query: 616 RAAAEA----RERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAE- 670
               E     +E    E  E EA  R   +R      +R E  A  R      E   A+ 
Sbjct: 853 EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912

Query: 671 --ARERAA--AAARANQNQQ 686
              R+R +   A      ++
Sbjct: 913 EKKRKRLSELKAKLEALEEE 932

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 54.6 bits (131), Expect = 1e-07
 Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 6/152 (3%)

Query: 463 RHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERERER 522
           R   + +++++ +A +  +  Q  +EE+A +  A+++   E  + +   E  +L+   E 
Sbjct: 110 RLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEA 169

Query: 523 ERE-EKEREKKRIEKEKERAREIEKEREK-ARQAVERATREARERAAAEARLKAERAAVD 580
           +++ E+  +     K K  A   +K+ E  A+ A E+A  EA  +A AE   KAE AA +
Sbjct: 170 KKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEK--KAEAAAEE 227

Query: 581 KANAAARERAERAAV--QRAQAEARERAAAEA 610
           KA A  ++ A +A      A A+A ER AA A
Sbjct: 228 KAAAEKKKAAAKAKADKAAAAAKAAERKAAAA 259

Length = 387

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.5 bits (134), Expect = 1e-07
 Identities = 53/248 (21%), Positives = 88/248 (35%), Gaps = 14/248 (5%)

Query: 453 EAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEE 512
           E + R   +     E  +RE        E +Q   EE    ++  E L+ E+++ +  E 
Sbjct: 705 EELRRQLEELERQLEELKRELAALEEELEQLQSRLEE---LEEELEELEEELEELQ--ER 759

Query: 513 QRRLEREREREREEKEREKKRIEKEKERAREIEKER----EKARQAVERATREARERAAA 568
              LE E E   E   + K+ IE+ +E+ + +++E     E+  +A  R     RE  + 
Sbjct: 760 LEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESL 819

Query: 569 EARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAE 628
           E R   ER    +      E  E         E  E    E  E  E       E+   E
Sbjct: 820 EQRR--ERLE-QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELE 876

Query: 629 AREKEARERASVARTEAEALQRAERAAVQRAASEARERA-AAEARERAAAAARANQNQQK 687
              KE  E       E   L  +E A ++    + RER    EA+            ++ 
Sbjct: 877 DELKELEEEKEELEEELREL-ESELAELKEEIEKLRERLEELEAKLERLEVELPELEEEL 935

Query: 688 NDNDLESF 695
            +   ++ 
Sbjct: 936 EEEYEDTL 943

Length = 1163

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 55.7 bits (134), Expect = 1e-07
 Identities = 45/268 (16%), Positives = 94/268 (35%), Gaps = 21/268 (7%)

Query: 451 MKEAMDRAEAKFRHAK--EMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQRE 508
               M+ A+ K  H K   +  R       +        E +   +   + L   +QQ +
Sbjct: 180 QLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQ 239

Query: 509 KGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR----E 564
           +       +RE + E+ +K++  K++    E  R  E   E+ ++ + RA + A      
Sbjct: 240 QSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHI 299

Query: 565 RAAAEARLKAERAAVD---KANAAARERAERAAVQRAQAEARERAAAE-----ARERAER 616
           +A  +   +A+R   +   K  + A+   +RAA  + Q+   E+                
Sbjct: 300 KAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRD 359

Query: 617 AAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERA- 675
           A   A        ++    +     + +   L +  ++  +      RE+A  + R  A 
Sbjct: 360 AHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAF 419

Query: 676 ------AAAARANQNQQKNDNDLESFFS 697
                  A A+  Q  Q+   +L +   
Sbjct: 420 RDLQGQLAHAKKQQELQQRYAELCAAAI 447

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.7 bits (132), Expect = 2e-07
 Identities = 48/334 (14%), Positives = 100/334 (29%), Gaps = 40/334 (11%)

Query: 479 SRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEK 538
           SR       ++R  ++  +E  + E Q  +  EE + L+ E     +  E  ++++E+ +
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715

Query: 539 ERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRA 598
            +  E+++E     + +E+      E       L+ E   + +      E  E      A
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775

Query: 599 QAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQR 658
           + +       E R+      A   E    E   +EA  R      E E+L++      Q 
Sbjct: 776 KLKEEIEELEEKRQ------ALQEELEELEEELEEAERRLDALERELESLEQRRERLEQE 829

Query: 659 AASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFD 718
                 E    E  +         + +++ +   E    + +        +    D L  
Sbjct: 830 IEELEEEIEELEE-KLDELEEELEELEKELEELKEELEELEAE-------KEELEDEL-- 879

Query: 719 SQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRR 778
                                          ++L        S   E ++   +  ER  
Sbjct: 880 ------------------------KELEEEKEELEEELRELESELAELKEEIEKLRERLE 915

Query: 779 ARLERHQRTQERAAKALAEKNERDLQAQRDQAER 812
               + +R +    +   E  E        + ER
Sbjct: 916 ELEAKLERLEVELPELEEELEEEYEDTLETELER 949

Length = 1163

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 54.0 bits (130), Expect = 4e-07
 Identities = 55/204 (26%), Positives = 80/204 (39%), Gaps = 6/204 (2%)

Query: 486 DREERATQQDAQERLDREMQQREKGE-EQRRLEREREREREEKEREKKRIEKEKERAREI 544
           D +E     DA E+LD    + E+ E  +R L    +R R       +R      R R  
Sbjct: 218 DDDELTDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRR---RATRLRSA 274

Query: 545 EKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARE 604
           + + ++  + + RA  E       E  L A   A+++   A R R E      A  +A E
Sbjct: 275 QTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEE 334

Query: 605 RAAAEARERAERAAAEARERANAEA--REKEARERASVARTEAEALQRAERAAVQRAASE 662
              A A   A +AAA    +A  EA  R +E R R        +  +R  RAA ++ A  
Sbjct: 335 LERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARA 394

Query: 663 ARERAAAEARERAAAAARANQNQQ 686
           A     + A      AA A Q  Q
Sbjct: 395 AERAGLSPAHTAEPDAALAAQELQ 418

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 53.2 bits (129), Expect = 4e-07
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 28/184 (15%)

Query: 437 EDVESSIAAASAAA---MKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQ 493
           E+ +  +  A   A    KEA+  A+ +    +   E+E              RE R   
Sbjct: 38  EEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKEL-------------RERRNEL 84

Query: 494 QDAQERL-DREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKAR 552
           Q  ++RL  +E     K E   + E E E++ +E E++++ +EK++E   E+E+  E+  
Sbjct: 85  QKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE---ELEELIEEQL 141

Query: 553 QAVERATR----EARER--AAAEARLKAERAA-VDKANAAARERAERAAVQRAQAEARER 605
           Q +ER +     EA+E      E   + E A  + +    A+E A++ A +   A+A +R
Sbjct: 142 QELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKA-KEILAQAIQR 200

Query: 606 AAAE 609
            AA+
Sbjct: 201 CAAD 204

Length = 520

>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion]

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 28/109 (25%), Positives = 46/109 (42%)

Query: 493 QQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKAR 552
           +++AQ  L    Q+ E+  EQ     E+ ++  E+  E+ + E E+E  R  E    +  
Sbjct: 53  KEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIE 112

Query: 553 QAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAE 601
              ERA  E R   A  A   AE+    K + AA++    A +      
Sbjct: 113 AEKERALEELRAEVAELAVAIAEKLLGKKVDEAAQKDLIDAFIAELGEN 161

Length = 161

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 53.4 bits (129), Expect = 5e-07
 Identities = 37/226 (16%), Positives = 62/226 (27%), Gaps = 18/226 (7%)

Query: 593 AAVQRAQ----AEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEAL 648
           AA++ A+    A A    AA A      A A A  R   +   + A  +A  A     A 
Sbjct: 53  AAIKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAA 112

Query: 649 QRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRP 708
             A  AA    A++ARER       R  AA +A +  ++   +  +  +  +        
Sbjct: 113 AAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDER 172

Query: 709 RANTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQD 768
           R        + +        R        +                            + 
Sbjct: 173 RRRGDR---EDRQAEAERGERGRREERGRDGDDRDRRDR-----------REQGDRREER 218

Query: 769 VEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAERHR 814
              +  +RR  R  R +R            +      +     R R
Sbjct: 219 GRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGR 264

Length = 672

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 53.7 bits (129), Expect = 5e-07
 Identities = 69/305 (22%), Positives = 100/305 (32%), Gaps = 25/305 (8%)

Query: 549 EKARQAVERATREAR--ERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERA 606
           ++ R  +ER     R         R  A            R RA R    + Q +   R 
Sbjct: 233 DEYRDELERLEALERALRNFLQRYRRYARTML--------RRRATRLRSAQTQYDQLSRD 284

Query: 607 AAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARER 666
              AR+  E A  E RE    +AR +     A   RT  EALQ     A Q A    R R
Sbjct: 285 LGRARDELETAREEERE---LDARTEALEREADALRTRLEALQ--GSPAYQDAEELERAR 339

Query: 667 AAAEARERAAAAAR--ANQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGG 724
           A AEA + AAA AR    + + + + +       + R   A R      + L  +  + G
Sbjct: 340 ADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAG 399

Query: 725 PEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRRARLERH 784
             PA      A+   ++                A    A        E     R R +  
Sbjct: 400 LSPAHTAEPDAALAAQELQELGA--------LDARRQDADRVIAQRSEQVALLRRRDDVA 451

Query: 785 QRTQERAAKALAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYV 844
            R +   A A A ++E D +A++  A      E +  E  R A       +    T+  V
Sbjct: 452 DRAEATHAAARARRDELDEEAEQAAARAELADEAVHREGARLAWVDAWQAQLRELTILAV 511

Query: 845 LWPES 849
                
Sbjct: 512 DDQPG 516

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 53.0 bits (128), Expect = 5e-07
 Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 28/182 (15%)

Query: 507 REKGEEQRRLERERERER--EEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR- 563
           R++  E++    E   +R  EE ++E + ++KE     E ++E  K R  +ER  +E R 
Sbjct: 19  RKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALL--EAKEEVHKLRAELERELKERRN 76

Query: 564 ERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAA-----------AEARE 612
           E    E RL      +D+   +  ++ E    +  +   +E+             AE RE
Sbjct: 77  ELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQRE 136

Query: 613 RAERAAA----EARERANAEAREKEARERAS-VARTEAEALQRAER-------AAVQRAA 660
             ER +     EA+E    E  E+   E A  +   E EA + A++        A+QR A
Sbjct: 137 ELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKEILATAIQRYA 196

Query: 661 SE 662
            +
Sbjct: 197 GD 198

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional

 Score = 53.1 bits (127), Expect = 7e-07
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 12/174 (6%)

Query: 519  EREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR---ERAAAEARLKAE 575
            E++R R E+ REK+  + E  RA     E   AR+       E +   +  AAEA+   E
Sbjct: 880  EKDRARAEELREKRG-KLEAHRAMLSGSEANSARRDTMEIQNEQKPTQDGPAAEAQPAQE 938

Query: 576  RA---AVDKANAAARERAERA--AVQRAQAEARERAAAEARERAERAAAE---ARERANA 627
                 + +KA AA  E A++A  AV     +  E      R   ++AAA     +++   
Sbjct: 939  NTVVESAEKAVAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAK 998

Query: 628  EAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARA 681
            +A  K+A  + + A+  A   + A++A  ++ A +   + AA+   R AA  +A
Sbjct: 999  KAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAGRKA 1052

Length = 1052

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.1 bits (128), Expect = 8e-07
 Identities = 38/209 (18%), Positives = 83/209 (39%), Gaps = 8/209 (3%)

Query: 437 EDVESSIAAA--SAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERAT-- 492
            ++E+ IA+   S A  +  ++ AE +    +   ++   +       ++ +R+ R    
Sbjct: 297 GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT 356

Query: 493 ---QQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKERE 549
               +  +E  D   +  E  +E      E +  RE+ E+ K+ I + K     +++E +
Sbjct: 357 EEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQ 416

Query: 550 KARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAE 609
           +  + +           A    L+ E+            + E+ A   ++ E       E
Sbjct: 417 RLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476

Query: 610 ARERAERAAAEA-RERANAEAREKEARER 637
             +R E+  ++  RE A AEA+ + + ER
Sbjct: 477 EYDRVEKELSKLQRELAEAEAQARASEER 505

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 51.8 bits (125), Expect = 1e-06
 Identities = 36/168 (21%), Positives = 52/168 (30%), Gaps = 6/168 (3%)

Query: 574 AERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKE 633
           A + A     AAA       A    +A     AA +A + A  AAA   E A A      
Sbjct: 54  AIKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAA 113

Query: 634 ARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLE 693
           A   A+ A   A+A +R ER         AR+      +    A A A +  ++ + D  
Sbjct: 114 AAAEAASAPEAAQARERRERGE-AARRGAARKAGEGGEQPATEARADAAERTEEEERDER 172

Query: 694 SFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASSNMRK 741
                  R     R            + +G     R          R+
Sbjct: 173 -----RRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRR 215

Length = 672

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 51.7 bits (125), Expect = 1e-06
 Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 26/187 (13%)

Query: 490 RATQQDAQERLDREMQQREKGEEQRRLERERERE-REEKEREKKRIEKE-KERAREIEKE 547
            A  ++A+E   R +++ +K  E   +++E   E +EE  + +   EKE +ER  E++K 
Sbjct: 30  EAKIKEAEEEAKRILEEAKK--EAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKL 87

Query: 548 REKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAA 607
            ++  Q  E   R+       E  L+ +   +++      ++ E            E   
Sbjct: 88  EKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEEL----------EELI 137

Query: 608 AEARERAERAAA----EARERANAEAREKEARERAS-VARTEAEALQRAER-------AA 655
            E  +  ER +     EA+E    +  E+   E A  +   E EA + A++        A
Sbjct: 138 EEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKEILAQA 197

Query: 656 VQRAASE 662
           +QR A++
Sbjct: 198 IQRCAAD 204

Length = 520

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 52.0 bits (125), Expect = 1e-06
 Identities = 44/184 (23%), Positives = 71/184 (38%), Gaps = 9/184 (4%)

Query: 456 DRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRR 515
            R     R  +E RE       ++++     RE +  +   + R   E QQ  + E QRR
Sbjct: 623 TRDNRTRREGRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRR 682

Query: 516 LEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAE 575
               R  E+ + ++E K +  E++  +E E+E E+ +Q   R  +    +   + R++  
Sbjct: 683 ----RNDEKRQAQQEAKALNVEEQSVQETEQE-ERVQQVQPRRKQRQLNQ---KVRIEQS 734

Query: 576 RAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEAR 635
            A    A       A    VQ   A   E         A+  A E  E  NAE R+    
Sbjct: 735 VAEEAVAPVVEETVAAEPVVQEVPAPRTELVKVPLPVVAQ-TAPEQDEENNAENRDNNGM 793

Query: 636 ERAS 639
            R S
Sbjct: 794 PRRS 797

Length = 1068

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.2 bits (125), Expect = 1e-06
 Identities = 43/184 (23%), Positives = 61/184 (33%), Gaps = 7/184 (3%)

Query: 554 AVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARER 613
            V  A      RAAA     A  A      AA    A +AA   A   A    AA A   
Sbjct: 375 RVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPA 434

Query: 614 AERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARE 673
                 +A +       +  AR  A     E +A   A+  +    AS+A   AA E   
Sbjct: 435 TADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAP 494

Query: 674 RAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSV 733
           RAAA + A      +        + +SR  +         ++     +     PA R   
Sbjct: 495 RAAAPSAATPAAVPDARAP----AAASREDAPAAAAPPAPEA--RPPTPAAAAPAARAG- 547

Query: 734 GASS 737
           GA++
Sbjct: 548 GAAA 551

Length = 830

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 51.1 bits (123), Expect = 2e-06
 Identities = 42/183 (22%), Positives = 66/183 (36%), Gaps = 16/183 (8%)

Query: 511 EEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEA 570
           EE R L  +    +  KER+ +  EK++ +A E E+ER                    E 
Sbjct: 4   EELRELNEKLRAAKVNKERDAQIEEKKRIKAEEKEEERRIDEMM-------------EEE 50

Query: 571 RLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAR 630
           RLKA     ++      ER E  AV + Q E RE+   E  E   +   E  +      R
Sbjct: 51  RLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQ---EREQMDEIIER 107

Query: 631 EKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDN 690
            +E  E  +  + E +   R E         E +E      RE         + + + + 
Sbjct: 108 IQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREE 167

Query: 691 DLE 693
           + E
Sbjct: 168 ERE 170

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 52.0 bits (125), Expect = 2e-06
 Identities = 74/256 (28%), Positives = 100/256 (39%), Gaps = 27/256 (10%)

Query: 437 EDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRER-----ESFKAARSRESVQPDREERA 491
           + VE S    +    +E ++  EA+    +E  E      E  +     E      EER 
Sbjct: 459 QPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERR 518

Query: 492 TQQDAQERLDREMQQREKGEEQR-RLERERER------EREEKEREKKRIEKEKERAREI 544
             +D +E +    ++RE  EE+R R E  RER      E EEK       E+E E ARE 
Sbjct: 519 --EDLEELIA---ERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREE 573

Query: 545 EKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARE 604
             E       ++    E  E       L A  A  +      RE+  R A+     E RE
Sbjct: 574 VAELNSKLAELK----ERIESLERIRTLLAAIADAEDEIERLREK--REALAELNDERRE 627

Query: 605 RAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQ-RAERAAVQRA--AS 661
           R  AE RER     AE  E    EARE + R    + + E +  + R ER  +Q    A 
Sbjct: 628 R-LAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAV 686

Query: 662 EARERAAAEARERAAA 677
           E       E RER  A
Sbjct: 687 ENELEELEELRERREA 702

Length = 880

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 51.4 bits (124), Expect = 2e-06
 Identities = 41/208 (19%), Positives = 75/208 (36%), Gaps = 5/208 (2%)

Query: 431 GEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREER 490
               +P       A A+AAA +     AEA    A+      +  AA +  +  P+  + 
Sbjct: 68  ATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQA 127

Query: 491 ATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREK 550
             +++  E   R   ++     ++     R    E  E E    E+++ R R   ++R+ 
Sbjct: 128 RERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEE----ERDERRRRGDREDRQA 183

Query: 551 ARQAVERATREARERAAAEARLKAERAAVDKA-NAAARERAERAAVQRAQAEARERAAAE 609
             +  ER  RE R R   +   +  R   D+      R+  +R   +R +     R    
Sbjct: 184 EAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDN 243

Query: 610 ARERAERAAAEARERANAEAREKEARER 637
             +R +R   +   R     R    R+R
Sbjct: 244 REDRGDRDGDDGEGRGGRRGRRFRDRDR 271

Length = 672

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 52.0 bits (125), Expect = 2e-06
 Identities = 49/256 (19%), Positives = 99/256 (38%), Gaps = 14/256 (5%)

Query: 445 AASAAAMKEAMDRAEAKFRHAKEMRER--ESFKAARSRESVQPDREERATQQDAQERLDR 502
           AA+   ++E + +AE   + A   +++  E    A +    Q   E  A     Q RLD 
Sbjct: 599 AANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDL 658

Query: 503 EMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREA 562
           +  Q E+   + +LE      +++ E + ++++ + +   ++ ++++   +A++   RE 
Sbjct: 659 QRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLK---QLLEQQQAFLEALKDDFREL 715

Query: 563 R-----ERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERA 617
           R     +    E  L  + A +  A  AA  R +  A  +   +  +R  A         
Sbjct: 716 RTERLAKWQVVEGELDNQLAQLSAAIEAA--RTQAKARLKELKKQYDRELASLDVDPNTV 773

Query: 618 AAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAA 677
               R+    E   +    R    R E  A  + E    + +  E R   A + RE  ++
Sbjct: 774 KELKRQIEELETTIERIAVRRPEVR-EYRAFMQ-ETWLHRDSLREERPNLAIQLRELESS 831

Query: 678 AARANQNQQKNDNDLE 693
           A    Q   +   D +
Sbjct: 832 AEELQQELTRLIKDTK 847

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional

 Score = 51.8 bits (124), Expect = 2e-06
 Identities = 62/330 (18%), Positives = 113/330 (34%), Gaps = 42/330 (12%)

Query: 498  ERLDREM----QQREKGEEQRR-LEREREREREEKEREKKRIEKEKERAREIEKEREKAR 552
            + L++E+    ++  K EE R  L+R   R      ++  R   +K   ++  K+  ++ 
Sbjct: 1159 DALEKELDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESE 1218

Query: 553  QAVERATREARER--AAAEARLKAERAAVDKANAAARER---------AERAAVQRAQAE 601
               E     A E    A   + K    A  KA AAA+E+          +R A     + 
Sbjct: 1219 TTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSA 1278

Query: 602  ARERAAAEA---RERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQR 658
              + A  E       A RAAA  +  A+         +    A  E    +R ++   ++
Sbjct: 1279 PAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFA-VEVSLAERLKKKGGRK 1337

Query: 659  AASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFD 718
             A+  ++ A   A  +    A     Q+     L+   ++   P    R           
Sbjct: 1338 PAAANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKMR-------- 1389

Query: 719  SQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRR 778
                    P  + S    S + +A++      +  S    +GSS+ E +D    + + R 
Sbjct: 1390 ------ASPFNKKS---GSVLGRAATN----KETESSENVSGSSSSE-KDEIDVSAKPRP 1435

Query: 779  ARLERHQRTQERAAKALAEKNERDLQAQRD 808
             R  R Q T   +       ++ D     D
Sbjct: 1436 QRANRKQTTYVLSDSESESADDSDFDDDED 1465

Length = 1465

>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional

 Score = 51.8 bits (124), Expect = 2e-06
 Identities = 64/293 (21%), Positives = 111/293 (37%), Gaps = 21/293 (7%)

Query: 450  AMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREK 509
            A+++ +D+ + +   A+E RE+    AAR           +A ++ A ++  ++  + E 
Sbjct: 1160 ALEKELDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESET 1219

Query: 510  GEEQRRLEREREREREEKEREKKR-------IEKEKERAREIEKEREKARQAVERATREA 562
             EE             E  + K R           KE+  E E    K R A        
Sbjct: 1220 TEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSAP 1279

Query: 563  RERAAAEA---RLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAA 619
             + A  E     + A RAA  K   A+      +             A   +++  R  A
Sbjct: 1280 AQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGRKPA 1339

Query: 620  EARERAN---AEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAA 676
             A ++A    A A+++      S  +   E L+ AE   +       + RA+   ++  +
Sbjct: 1340 AANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKMRASPFNKKSGS 1399

Query: 677  AAARANQNQQKNDNDLESFFSMSSRP----SSAPRP-RAN---TSDSLFDSQS 721
               RA  N++   ++  S  S S +     S+ PRP RAN   T+  L DS+S
Sbjct: 1400 VLGRAATNKETESSENVSGSSSSEKDEIDVSAKPRPQRANRKQTTYVLSDSES 1452

Length = 1465

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 50.8 bits (121), Expect = 2e-06
 Identities = 38/206 (18%), Positives = 75/206 (36%), Gaps = 4/206 (1%)

Query: 498 ERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVER 557
             L  E+   +  +     ERE  R   +K R+++  E  ++      +   KA+Q + R
Sbjct: 84  RALRTELGTAQGEKRAAETEREAARSELQKARQER--EAVRQELAAARQNLAKAQQELAR 141

Query: 558 ATREARERAAAEARLKAERA-AVDKANAAARERAERAAVQRAQAEARERAAAEARERAER 616
            T++A++       L  +R     +A +    + +  A               + +  + 
Sbjct: 142 LTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQE 201

Query: 617 AAAEARERANAEAREKE-ARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERA 675
           A   A     A+AR +E AR  A+  +T     QR  + + +     AR     E   + 
Sbjct: 202 AQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQL 261

Query: 676 AAAARANQNQQKNDNDLESFFSMSSR 701
                A    ++    LE+++    R
Sbjct: 262 QRLETAQARLEQEVAQLEAYYQAYVR 287

Length = 499

>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 12/171 (7%)

Query: 475 KAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRI 534
            A  +   +Q  ++E   + +A     +E+  RE+ ++++   RERE  + E+ER  ++ 
Sbjct: 31  LAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKE 90

Query: 535 EKEKERAREI---EKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAE 591
           E+   RA ++   E + E+  +A+     E  E    +   +  R A         E+A 
Sbjct: 91  EQLDARAEKLDNLENQLEEREKALSARELELEEL-EKQLDNELYRVA-----GLTPEQAR 144

Query: 592 RAAVQRAQAEARERAAAEARERAERAAAEARERAN---AEAREKEARERAS 639
           +  ++   AE  E  A   ++  E A  EA  +A    A+A ++ A E AS
Sbjct: 145 KLLLKLLDAELEEEKAQRVKKIEEEADLEAERKAQNILAQAMQRIASETAS 195

Length = 508

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 50.9 bits (122), Expect = 3e-06
 Identities = 36/216 (16%), Positives = 68/216 (31%), Gaps = 14/216 (6%)

Query: 453 EAMDRAEAKFRHAKEMRERESFKA-----ARSRESVQPDREERATQQDAQERLD--REMQ 505
           E ++    +    KE  + +  K          + ++   EE    +  +E L+  RE  
Sbjct: 536 EKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERL 595

Query: 506 QREKGEEQRRLEREREREREEKEREKKRIEKEKERARE-IEKEREKARQAVERATREARE 564
           +  K + +   ER  + E   +  E    E E E A E +E E EK     E        
Sbjct: 596 KELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAA 655

Query: 565 RAAAEARLKAERAAVDK------ANAAARERAERAAVQRAQAEARERAAAEARERAERAA 618
               E +++   A + +            E+ E       + E       E  ++     
Sbjct: 656 LEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIE 715

Query: 619 AEARERANAEAREKEARERASVARTEAEALQRAERA 654
               E  + +A  +E ++         E L+     
Sbjct: 716 QLIEELESRKAELEELKKELEKLEKALELLEELREK 751

Length = 908

>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown]

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 57/248 (22%), Positives = 101/248 (40%), Gaps = 21/248 (8%)

Query: 443 IAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDR 502
                A+ + E  D   AK    +E+RE+         E  +  +E +  + +   +L  
Sbjct: 31  ELRKEASELAEKRDELNAK---VRELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87

Query: 503 EMQQREKGEEQRRLEREREREREEKEREKKRIEKE-------KERAREIEKEREKARQAV 555
             ++  + +E+R       R  +  ERE +R+EK+        E  RE+ ++ ++ R+ +
Sbjct: 88  LRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKEL 147

Query: 556 ERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARE-----RAAAEA 610
           E A ++A E       LKAE   + K      E+ +  A   AQ    E       A E 
Sbjct: 148 EDA-KKALEENEKLKELKAEIDELKKKAREIHEKIQELA-NEAQEYHEEMIKLFEEADEL 205

Query: 611 RERAERAAAEARE-RANAEAREKEARERASVAR---TEAEALQRAERAAVQRAASEARER 666
           R+ A+    E  E     +   +E R   +  R    + +AL+  E+AA +R   E  + 
Sbjct: 206 RKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKE 265

Query: 667 AAAEARER 674
            A E  E+
Sbjct: 266 RAEEIYEK 273

Length = 294

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 50.8 bits (121), Expect = 3e-06
 Identities = 35/193 (18%), Positives = 84/193 (43%), Gaps = 9/193 (4%)

Query: 428 NEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDR 487
           N      S  D +S        A++E  ++     R   +++ERES + A+  + ++ + 
Sbjct: 163 NILSGNVSDVDTDSISDKKVVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEEL 222

Query: 488 EERATQQD-AQERLDR-----EMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERA 541
           +++    D AQ++ D      + Q+ E  ++Q+  +   +       +E K++ + ++R 
Sbjct: 223 DKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKRE 282

Query: 542 RE-IEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAA-VQRAQ 599
            E  + E +K  +   +A          E++  +E+ A DK   A ++R   A  +Q+ +
Sbjct: 283 IEKAQIEIKKNDEEALKAKDHKAFDLKQESK-ASEKEAEDKELEAQKKREPVAEDLQKTK 341

Query: 600 AEARERAAAEARE 612
            +   +  +   +
Sbjct: 342 PQVEAQPTSLNED 354

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 6/143 (4%)

Query: 490 RATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKERE 549
           + +    +E+L     Q+ + +     E+ER RE EE++ E+ R E   E    IE+  E
Sbjct: 7   KRSNVINKEKLKTHEIQKYRFKVLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEE 66

Query: 550 KARQAVERATREARERAA-----AEARLKAERAAVDKANAAARERAERAAVQRAQAEARE 604
            A + VE A  EA+E        A + ++  +  +++      E  ER  ++ A+AE  E
Sbjct: 67  DAFEIVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELER-LIEEAKAEGYE 125

Query: 605 RAAAEARERAERAAAEARERANA 627
               + RE       E  E+ N 
Sbjct: 126 EGYEKGREEGLEEVRELIEQLNK 148

Length = 281

>gnl|CDD|116627 pfam08017, Fibrinogen_BP, Fibrinogen binding protein

 Score = 50.2 bits (119), Expect = 3e-06
 Identities = 63/293 (21%), Positives = 120/293 (40%), Gaps = 15/293 (5%)

Query: 466 KEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERERER--- 522
           +  R+ E+       E  Q D E R +Q +  ER  R+++ + +G    R +R+ E    
Sbjct: 65  RRQRDAENRSQGNVLERRQRDAENR-SQGNVLERRQRDVENKSQGNVLERRQRDVENKSQ 123

Query: 523 ----EREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAA 578
               ER +++ E +      ER R+ + E +     +ER  R+A  R+      + +R  
Sbjct: 124 GNVLERRQRDAENRSQGNVLER-RQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDV 182

Query: 579 VDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREK----EA 634
            +K+     ER +R    ++Q    ER   +A  R++    E R+R + E + +    E 
Sbjct: 183 ENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQR-DVENKSQGNVLER 241

Query: 635 RERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAA-AARANQNQQKNDNDLE 693
           R+R    +++   L+R +R A  R+     ER   +   ++        Q   +N + + 
Sbjct: 242 RQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDAENKSQVG 301

Query: 694 SFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTT 746
                +   S +   R N   S  DS  +   +   + +  A+  M   +S T
Sbjct: 302 QLIGKNPLLSKSIISRENNHSSQGDSNKQSFSKKVSQVTNVANRPMLTNNSRT 354

Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation. Length = 393

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 50.5 bits (121), Expect = 4e-06
 Identities = 49/250 (19%), Positives = 95/250 (38%), Gaps = 20/250 (8%)

Query: 448 AAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQ-ERLDREMQQ 506
            A ++E ++  E + R  +E            +E ++ ++ E+      + E L  ++Q 
Sbjct: 496 EAELREEIEELEKELRELEEELIELLELEEALKEELE-EKLEKLENLLEELEELKEKLQL 554

Query: 507 REKGEEQRRLERERER-EREEKEREKKRIEKEK-ERAREIEKEREKARQAVERATRE--- 561
           ++  EE R+LE   +  +   +E    R  KE+ E  RE  KE +K  + +E    +   
Sbjct: 555 QQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEE 614

Query: 562 ----------ARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEAR 611
                       E   AE  L++E   ++       E   +AA++  + +  E   AE R
Sbjct: 615 LLQSLELSEAENELEEAEEELESELEKLNLQAEL--EELLQAALEELEEK-VEELEAEIR 671

Query: 612 ERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEA 671
              +R   E +     E  E+   E   +     E L++           E+R+    E 
Sbjct: 672 RELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEEL 731

Query: 672 RERAAAAARA 681
           ++      +A
Sbjct: 732 KKELEKLEKA 741

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 50.5 bits (121), Expect = 4e-06
 Identities = 45/236 (19%), Positives = 94/236 (39%), Gaps = 16/236 (6%)

Query: 464 HAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERERERE 523
           H KE+ E    +     E +  ++EE   +++ +E L++E+++ E+   +     E E  
Sbjct: 471 HEKELLELYELELEELEEELSREKEEAELREEIEE-LEKELRELEEELIELL---ELEEA 526

Query: 524 REEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKAN 583
            +E+  EK  +EK +    E+E+ +EK +    +      E    E RL+  +  +++  
Sbjct: 527 LKEELEEK--LEKLENLLEELEELKEKLQLQQLKE-----ELRQLEDRLQELKELLEELR 579

Query: 584 AAARERAERAAVQRAQAEARER-AAAEARERAERAAAEARERANAEAREKEARERASVAR 642
                + E   ++    E +++    E R        ++ E + AE   +EA E      
Sbjct: 580 LLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESEL 639

Query: 643 TEAEA---LQRAERAAVQRAASEARERAAAEARERAAAAARAN-QNQQKNDNDLES 694
            +      L+   +AA++    +  E  A   RE          + + +    LE 
Sbjct: 640 EKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEE 695

Length = 908

>gnl|CDD|224482 COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]

 Score = 50.0 bits (120), Expect = 4e-06
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 17/129 (13%)

Query: 551 ARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEA 610
            R A+E+A          EA L A  A +   N  A+  + +A + +A+A+  ++A  E 
Sbjct: 89  YRAALEQA----------EAALAAAEAQLR--NLRAQLASAQALIAQAEAQDLDQAQNEL 136

Query: 611 RERAE---RAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERA 667
             RAE   R      E   A A  + A   A++A  +A   Q       + + ++A+  +
Sbjct: 137 ERRAELAQRGVVSREELDRARAALQAA--EAALAAAQAAQKQNLALLESEVSGAQAQVAS 194

Query: 668 AAEARERAA 676
           A  A ++A 
Sbjct: 195 AEAALDQAK 203

Length = 352

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 49.8 bits (119), Expect = 4e-06
 Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 21/149 (14%)

Query: 507 REKGEEQRRLEREREREREEKEREKKR-----------IEKEKERAREIEKEREKARQAV 555
           +E   EQR   RE+++E++      +R             +      EI+K R  A +  
Sbjct: 284 KEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTR-TAEKNE 342

Query: 556 ERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAE 615
            +A +    +  A+ R  AER    +A         RA  +RA  +A+++   +A    +
Sbjct: 343 AKARK----KEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNED 398

Query: 616 RAAAEARERAN-----AEAREKEARERAS 639
             +     + +     A    +  RE + 
Sbjct: 399 TPSENEESKGSPPQVEATTTAEPNREPSQ 427

Length = 429

>gnl|CDD|180240 PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 601 EARERAAAEARERAERAAAEARERANAEARE--KEARERASVARTEAEALQRAERAAVQR 658
           E R++  A+    AERA  E  E A A+      EAR  A+    +A+     +RAA   
Sbjct: 34  EERQKKIADGLAAAERAKKEL-ELAQAKYEAQLAEARAEAAEIIEQAK-----KRAAQII 87

Query: 659 AASEARERAAAEARERAAAAARANQNQQKND 689
              EA+  A AEA  R  A A+A   Q++  
Sbjct: 88  E--EAKAEAEAEA-ARIKAQAQAEIEQERKR 115

Length = 156

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 50.1 bits (120), Expect = 6e-06
 Identities = 52/268 (19%), Positives = 91/268 (33%), Gaps = 9/268 (3%)

Query: 435 SPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQ 494
             E +E          ++E     E      + + E E  +     E ++  R      +
Sbjct: 260 EIESLELEALKIREEELRELERLLEELEEKIERLEELER-EIEELEEELEGLRALLEELE 318

Query: 495 DAQERLDREMQQREKGEEQRR-LEREREREREEKEREKKRIEKEKERAREIEKEREKARQ 553
           +  E+L    ++ EK EE+   LE E E   EEK    K +E   ER +E+E+  E+  +
Sbjct: 319 ELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLE---ERLKELEERLEELEK 375

Query: 554 AVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARER 613
            +E+A    ++   A   LK E A +  A    +E  E    +  + E       E  ++
Sbjct: 376 ELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKK 435

Query: 614 AERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARE 673
            E    +   +    A    A E+  V   E   L       +        E    E   
Sbjct: 436 LEEQINQLESKELMIAELAGAGEKCPVCGQE---LPEEHEKELLELYELELEE-LEEELS 491

Query: 674 RAAAAARANQNQQKNDNDLESFFSMSSR 701
           R    A   +  ++ + +L         
Sbjct: 492 REKEEAELREEIEELEKELRELEEELIE 519

Length = 908

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 50.2 bits (120), Expect = 6e-06
 Identities = 55/253 (21%), Positives = 86/253 (33%), Gaps = 26/253 (10%)

Query: 449 AAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQRE 508
           A  +     A+A     + ++   +++ A   E  + D E          +  RE + R 
Sbjct: 304 ARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREAESRL 363

Query: 509 KGEEQRRL----------EREREREREEKEREKKR--------IEKEKERAREIEKEREK 550
           + EE+RRL          ERE    RE+  R  +R         E +   A +  +E   
Sbjct: 364 E-EERRRLDEEAGRLDDAERELRAAREQLARAAERAGLSPAHTAEPDAALAAQELQELGA 422

Query: 551 ---ARQAVERATREARERAAAEARLKAERAAVDKANAAAR----ERAERAAVQRAQAEAR 603
               RQ  +R   +  E+ A   R        +  +AAAR    E  E A    A+AE  
Sbjct: 423 LDARRQDADRVIAQRSEQVALLRRRDDVADRAEATHAAARARRDELDEEAEQAAARAELA 482

Query: 604 ERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEA 663
           + A      R     A   +         + +  A       +AL + E        S  
Sbjct: 483 DEAVHREGARLAWVDAWQAQLRELTILAVDDQPGALADLDSWDALLQGEAPVRVAVYSAV 542

Query: 664 RERAAAEARERAA 676
           +  A    RERAA
Sbjct: 543 QPLADELTRERAA 555

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 49.6 bits (118), Expect = 6e-06
 Identities = 46/226 (20%), Positives = 87/226 (38%), Gaps = 13/226 (5%)

Query: 474 FKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERERERER--------- 524
           F+    R  ++  R E  T Q  +   + E +      ++ R ERE  R+          
Sbjct: 74  FQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLA 133

Query: 525 ---EEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDK 581
              +E  R  K+ +  + R + + ++R +     +      ++  A+  +LK++   +  
Sbjct: 134 KAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKL 193

Query: 582 ANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERAN-AEAREKEARERASV 640
            +A   + A+  A +   A+AR    A     A++ A   ++R      + ++   RA  
Sbjct: 194 RSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQ 253

Query: 641 ARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQ 686
            R     LQR E A  +     A+  A  +A  R    A A Q  Q
Sbjct: 254 IRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQRGQ 299

Length = 499

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 49.8 bits (120), Expect = 6e-06
 Identities = 21/109 (19%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 508 EKGEEQRRLEREREREREEKEREKKRIEKE-KERAREIEKEREKARQAVERATREARERA 566
              EE  R   ++  E E   +E +++++E +E+  ++++E +K  +  E+  ++A + A
Sbjct: 523 ASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEA 582

Query: 567 AAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAE 615
                 K E   + K      ++   A+V+  +     +   +A E+ E
Sbjct: 583 ------KKEADEIIK-ELRQLQKGGYASVKAHELIEARKRLNKANEKKE 624

Length = 782

>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional

 Score = 49.6 bits (119), Expect = 7e-06
 Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 21/127 (16%)

Query: 589 RAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEAL 648
           R  +A + RA  + +++A  EA+ R E  A +AR       REK ARE            
Sbjct: 432 RQAKAEI-RAIEQEKKKAE-EAKARFE--ARQARLE-----REKAARE------------ 470

Query: 649 QRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRP 708
            R ++AA  RAA +    AAA AR +A  AA       K     ++   +++R +   + 
Sbjct: 471 ARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQA 530

Query: 709 RANTSDS 715
           RA  ++ 
Sbjct: 531 RARQAEK 537

Length = 695

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 49.7 bits (119), Expect = 7e-06
 Identities = 46/235 (19%), Positives = 83/235 (35%), Gaps = 16/235 (6%)

Query: 437 EDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDA 496
              E +   A    ++E ++ AE +   A+   E    +  + +E ++  RE     +  
Sbjct: 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811

Query: 497 QERLDREMQQREKGEEQRRLEREREREREEKERE--KKRIEKEKERAREIEKEREKARQA 554
              L+ E     +  E      ER     E+  E  +++IE+  E    +  E E+  + 
Sbjct: 812 LTLLNEEAANLRERLESL----ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867

Query: 555 VERATREA----RERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEA 610
           +E    E      ERA+ E  L   R+ +++ +   RE    +     + E  E     A
Sbjct: 868 IEELESELEALLNERASLEEALALLRSELEELSEELRE--LESKRSELRRELEELREKLA 925

Query: 611 RERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARE 665
           +        E R     E       E  S+   EAEAL+       + A    + 
Sbjct: 926 QLELRLEGLEVRIDNLQER----LSEEYSLTLEEAEALENKIEDDEEEARRRLKR 976

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 50.0 bits (119), Expect = 7e-06
 Identities = 59/388 (15%), Positives = 119/388 (30%), Gaps = 19/388 (4%)

Query: 459 EAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLER 518
           + +   +K+  E+E    A+  +     +EE   ++  +E L    ++ E+ + +     
Sbjct: 251 QEEIESSKQELEKEEEILAQVLKEN---KEEEKEKKLQEEELKLLAKEEEELKSELLKLE 307

Query: 519 EREREREEK----EREKKRIEKEKERAREIEKEREKARQAVE--RATREARERAAAEARL 572
            R+ + EEK    E+E K++EKE ++ +E  +E EK  + +E  R   E  E    + + 
Sbjct: 308 RRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQE 367

Query: 573 KAERAA------VDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERAN 626
           K E+            +      A+    +       E+ A    E +E+     +E   
Sbjct: 368 KLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKK 427

Query: 627 AEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQ 686
            E +  E  E +   +      ++ E    Q       +    ++ +           +Q
Sbjct: 428 EELKIVEELEESLETKQGKLTEEKEEL-EKQALKLLKDKLELKKSEDLLKETKLVKLLEQ 486

Query: 687 KNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKG-GPEPARRTSVGASSNMRKASST 745
                L      +S+  S  R       +L            A R      +      + 
Sbjct: 487 LELLLLRQKLEEASQKESKAREGLAVLLALIKDGVGLRIISAAGRGGDLGVAVANYKVAI 546

Query: 746 TNIVDDLSSIFGAAGSSAGEFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQA 805
           +  V    S          +       TE    AR         +         E D   
Sbjct: 547 SVAVIVEVSAVADEVDERQKLVRA--LTELPLPARTFVLLDPLLKLPLKSIAVLEIDPAL 604

Query: 806 QRDQAERHRIAETLDVEIKRWAAGKEGN 833
              Q  +  +    D +  +   G   +
Sbjct: 605 NLAQLNKATLEADEDDKRAKVVEGILKD 632

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 48.9 bits (117), Expect = 7e-06
 Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 11/154 (7%)

Query: 494 QDAQERLDREMQQREKGEEQRRLERERERER---------EEKEREKKRIEKEKERAREI 544
           +D QE L  E + +E   E++R E ER  E+            +   + + +E +   E 
Sbjct: 193 EDHQELLQEEYE-KEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEE 251

Query: 545 EKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAAR-ERAERAAVQRAQAEAR 603
           E + E A +  E       +    + + KA+R    +     R  + E+   ++    AR
Sbjct: 252 ESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLAR 311

Query: 604 ERAAAEARERAERAAAEARERANAEAREKEARER 637
            +  A+   + E+A A  +E+      +K+ + R
Sbjct: 312 LKEIAKEVAQKEKARARKKEQRKERGEKKKLKRR 345

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.7 bits (119), Expect = 8e-06
 Identities = 36/193 (18%), Positives = 69/193 (35%), Gaps = 5/193 (2%)

Query: 437 EDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDA 496
           E+++  I A      +      E +   A+    +E  +   S        E     +  
Sbjct: 326 EELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSAL----LEELEELFEAL 381

Query: 497 QERLDREMQQREKGEEQRR-LEREREREREEKEREKKRIEKEKERAREIEKEREKARQAV 555
           +E L     +  +   +   L+RE E   E  ER  +R+E  KE  +E+E E E+ +  +
Sbjct: 382 REELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTEL 441

Query: 556 ERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAE 615
           E    E  E       L+     +++  A  +E  +R   + +  EAR       +  ++
Sbjct: 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQ 501

Query: 616 RAAAEARERANAE 628
              A      +  
Sbjct: 502 GVRAVLEALESGL 514

Length = 1163

>gnl|CDD|180240 PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated

 Score = 46.3 bits (111), Expect = 8e-06
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 527 KEREKKRIEKEKERAREIEKEREKARQAVERATREARERAA---AEARLKAERAAVDKAN 583
           +ER+KK I      A   +KE E A+   E    EAR  AA    +A+ K     +++A 
Sbjct: 34  EERQKK-IADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAK-KRAAQIIEEAK 91

Query: 584 AAARERAERAAVQRAQAEA---RERAAAEARE 612
           A A   A R    +AQAE    R+RA  E R+
Sbjct: 92  AEAEAEAAR-IKAQAQAEIEQERKRAREELRK 122

Length = 156

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 49.3 bits (117), Expect = 9e-06
 Identities = 51/235 (21%), Positives = 89/235 (37%), Gaps = 16/235 (6%)

Query: 452 KEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQ-QDAQERLDREMQQREKG 510
           +EA      K R  +E   +E   A ++    Q +      Q QD Q RL    +QR + 
Sbjct: 104 REAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQL 163

Query: 511 EEQRRL----EREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERA 566
           E Q +     +++ +    + + +   ++    +  +  +       A +  T E   RA
Sbjct: 164 EAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRA 223

Query: 567 AAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAE---ARERAERAAAEARE 623
           AA    +    A+ + +A   ++A++ A +  Q   RER       A+ R E+  A+   
Sbjct: 224 AA---AQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280

Query: 624 RANAEAREKEARERASVARTEAEALQRAERAAVQRAA-----SEARERAAAEARE 673
              A  R ++        +  A A QR  +A  Q  A     S A   AA   R 
Sbjct: 281 YYQAYVRLRQQAAATQRGQVLAGAAQRVAQAQAQAQAQAQLLSSANRPAALRLRR 335

Length = 499

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 48.9 bits (117), Expect = 1e-05
 Identities = 47/300 (15%), Positives = 102/300 (34%), Gaps = 38/300 (12%)

Query: 524 REEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAE--ARLKAERAAVDK 581
           RE  ++ ++ ++    + ++ E++  +A   +E   R   E   A   ARL  +R   ++
Sbjct: 606 RERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQ 665

Query: 582 ANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVA 641
                  ++ +  ++ A AE +++A  + R+   +      ++       K+        
Sbjct: 666 -------QSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTE 718

Query: 642 RTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSR 701
           R     +   E          A+  AA EA  R  A AR  + +++ D +L S       
Sbjct: 719 RLAKWQVVEGELDN-----QLAQLSAAIEAA-RTQAKARLKELKKQYDRELAS------- 765

Query: 702 PSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGS 761
                       D     + K   E    T    +    +          +   +    S
Sbjct: 766 ---------LDVDPNTVKELKRQIEELETTIERIAVRRPEV---REYRAFMQETWLHRDS 813

Query: 762 SAGEFQDVEGETEERRRA--RLERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETL 819
              E  ++  +  E   +   L++      +  K   +K E++ +A   Q    ++ E L
Sbjct: 814 LREERPNLAIQLRELESSAEELQQELTRLIKDTKLRRKKLEQERKALEKQL--DQLDELL 871

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 3/145 (2%)

Query: 543 EIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEA 602
           E E + EK RQ +ER   +  E+ A EA    E +          +           A  
Sbjct: 204 EKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLE---ESDDDGEEESDDESAWE 260

Query: 603 RERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASE 662
              +  E   +  R   + + + N E R KE    A   +   + L +  R         
Sbjct: 261 GFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVA 320

Query: 663 ARERAAAEARERAAAAARANQNQQK 687
            +E+A A  +E+        + +++
Sbjct: 321 QKEKARARKKEQRKERGEKKKLKRR 345

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 1e-05
 Identities = 51/144 (35%), Positives = 69/144 (47%), Gaps = 10/144 (6%)

Query: 548 REKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAA 607
            E    A  RA   ARE  A +A   A+ A    A AAARE A   A  R    A+ RA 
Sbjct: 182 AEALAAAPARAETLARE--AEDAARAADEAK-TAAAAAAREAAPLKASLRKLERAKARAD 238

Query: 608 AEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERA 667
           AE + RA++A A A+    A+AR +E +++A+    EA     A +    +A +EA+  A
Sbjct: 239 AELK-RADKALAAAKTD-EAKARAEERQQKAAQQAAEA-----ATQLDTAKADAEAKRAA 291

Query: 668 AAEARERAAAAARANQNQQKNDND 691
           AA  +E A AAA       K   D
Sbjct: 292 AAATKEAAKAAAAKKAETAKAATD 315

Length = 508

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 47/226 (20%), Positives = 94/226 (41%), Gaps = 19/226 (8%)

Query: 428 NEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDR 487
            EY +     +   S        ++E +   E K    +E++++   +  +  E ++   
Sbjct: 303 EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLK-ELEKRLEELEERH 361

Query: 488 EERATQQDAQERLDREMQQREKGEEQRRLERE---REREREEKEREKKRIEKEKERAREI 544
           E     +  +E L+R +++R  G    +LE+E    E+ +EE E E  +I       ++ 
Sbjct: 362 ELYEEAKAKKEELER-LKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKE 420

Query: 545 EKEREKARQAVERA-----------TREARERAAAEARLKAERAAVDKANAAARERAERA 593
            KE +KA + +++A           T E R+    E   + +R   +      +ER  R 
Sbjct: 421 IKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRK 480

Query: 594 AVQRAQAE-ARERAAAEARERAE--RAAAEARERANAEAREKEARE 636
            ++  +    +E    + +E AE  +   E  ++ N E  EK+A E
Sbjct: 481 ELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEE 526

Length = 880

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 51/252 (20%), Positives = 95/252 (37%), Gaps = 40/252 (15%)

Query: 448 AAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQR 507
           A A+ +  +    + +   E  ER        R     +  ER  +++++ + + E  +R
Sbjct: 391 AEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKR 450

Query: 508 EKGEEQRRLEREREREREE--KERE-----------KKRIEKEKERAREIEKEREKARQ- 553
           E  + +  LER R   R++  K+RE           +K +E++K+R  E+E++  + R+ 
Sbjct: 451 EIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKM 510

Query: 554 -------------AVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQ- 599
                         VE+ T EA E A  E  +K     +        E       + A+ 
Sbjct: 511 RKLELSGKGTPVKVVEKLTLEAIEEAEEEYGIKEGDVIL-------VEDPSGGGARTAEE 563

Query: 600 -AEARERAAAEARERAERAAAEARERANA---EAREKEARERASVARTEAEALQRAERAA 655
             + + RA     E    AAAE   +         + +       A  ++E L+RA    
Sbjct: 564 LIDKKPRAIIRG-EEMSHAAAEEFFKNEIPVLPEGDVQIIRLDEFAVVDSEELRRAIEEW 622

Query: 656 VQRAASEARERA 667
            +R     R + 
Sbjct: 623 KKRFEERERRQK 634

Length = 652

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 34/194 (17%), Positives = 61/194 (31%), Gaps = 6/194 (3%)

Query: 446 ASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQ 505
           A    +KE +          +      + +AA  RE ++      A  +   E L+ +++
Sbjct: 789 AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848

Query: 506 QREKGEEQRRLERERERE-REEKEREKKRIEKEKERAREIEKEREKARQAVERATREARE 564
           +  +  E    E E   E  EE E E + +  E+    E         + +    RE   
Sbjct: 849 ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908

Query: 565 RAAAEARLKAERAAVDKANAAARERAERAAVQRA--QAEARERAAAEARERAERAAAEAR 622
           +    + L+ E   + +  A    R E   V+    Q    E  +    E          
Sbjct: 909 KR---SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIED 965

Query: 623 ERANAEAREKEARE 636
           +   A  R K    
Sbjct: 966 DEEEARRRLKRLEN 979

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion]

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 538 KERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQR 597
            ER  +I  +  +A +  E A       A  E  L+  R    +    A++ AE+ A   
Sbjct: 36  DERQAKIADDLAEAERLKEEA---QALLAEYEQELEEAREQASEIIEQAKKEAEQIA--- 89

Query: 598 AQAEARERAAAEARERAERAAAE---ARERANAEAREKEARERASVART--EAEALQRAE 652
              E +  A  E     E A AE    +ERA  E R + A    ++A      +  + A+
Sbjct: 90  --EEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELAVAIAEKLLGKKVDEAAQ 147

Query: 653 RAAVQRAASEARER 666
           +  +    +E  E 
Sbjct: 148 KDLIDAFIAELGEN 161

Length = 161

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 48.0 bits (115), Expect = 2e-05
 Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 23/174 (13%)

Query: 456 DRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRR 515
             AE   +   E  ++E+      +E++   +EE    +   ER  +E +   +  E+R 
Sbjct: 28  GSAEELAKRIIEEAKKEA--ETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRL 85

Query: 516 LERE----------REREREEKEREKKRIEKEK---ERAREIEKEREKARQAVERA---- 558
           L+RE           ++E   +++EK+   KEK   E+  E+E+   + R+ +ER     
Sbjct: 86  LQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLT 145

Query: 559 TREARER--AAAEARLKAERAA-VDKANAAARERAERAAVQRAQAEARERAAAE 609
             EA+E      E   + E A  + +    A+E A++ A +   A A +R A +
Sbjct: 146 QEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKA-KEILATAIQRYAGD 198

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional

 Score = 48.2 bits (115), Expect = 2e-05
 Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 9/169 (5%)

Query: 445 AASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREM 504
           A  A  + +   +   +   A  +  +E     R+++  Q  R ER   Q  +ERL ++ 
Sbjct: 32  AKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQR-QEARREREELQREEERLVQKE 90

Query: 505 QQREKGEEQRRLEREREREREEK--EREKKRIEKEKERAREIEKEREKARQAVERATREA 562
           +Q +   E+      +  ERE+    RE +  E EK+   E+      A    E+A +  
Sbjct: 91  EQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELY---RVAGLTPEQARKLL 147

Query: 563 RERAAAEARLKAE---RAAVDKANAAARERAERAAVQRAQAEARERAAA 608
            +   AE   +     +   ++A+  A  +A+    Q  Q  A E A+ 
Sbjct: 148 LKLLDAELEEEKAQRVKKIEEEADLEAERKAQNILAQAMQRIASETASD 196

Length = 508

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 48.1 bits (114), Expect = 2e-05
 Identities = 31/173 (17%), Positives = 75/173 (43%), Gaps = 8/173 (4%)

Query: 500 LDREMQQREKGEEQRR-----LEREREREREEKEREKKRIEKEKERAREIEKEREKARQA 554
           ++   +  EKG   RR      ERE + + +  ++ K+ ++K++  A + +++ + A+  
Sbjct: 183 VEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDN 242

Query: 555 VERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERA 614
            ++   E R++      L                  ++  +++AQ E  ++   EA +  
Sbjct: 243 ADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEI-KKNDEEALKAK 301

Query: 615 ERAAAEARERANAEAREKEARERASVARTE--AEALQRAERAAVQRAASEARE 665
           +  A + ++ + A  +E E +E  +  + E  AE LQ+ +     +  S   +
Sbjct: 302 DHKAFDLKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSLNED 354

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|180240 PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 588 ERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEA 647
           ER ++ A   A AE  ++    A+ + E   AEAR  A AE  E +A++RA+    EA+A
Sbjct: 35  ERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEA-AEIIE-QAKKRAAQIIEEAKA 92

Query: 648 LQRAERAAVQRAASE----ARERAAAEARERAAAAA 679
              AE A ++  A       R+RA  E R++ A  A
Sbjct: 93  EAEAEAARIKAQAQAEIEQERKRAREELRKQVADLA 128

Length = 156

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 48.4 bits (115), Expect = 2e-05
 Identities = 30/228 (13%), Positives = 77/228 (33%), Gaps = 13/228 (5%)

Query: 466 KEMRERESFKAARSRESVQPDREERAT--QQDAQERLDREMQQREKGEEQRRLERERERE 523
           KE  ++         +    +         +  +ER+D   +     +E+    ++   +
Sbjct: 204 KEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEK 263

Query: 524 REEKEREKKRIEKEKERAREIEKEREK---ARQAVERATREARERAAAEARLKAERAAVD 580
            EE   +  +  KE+E+ +++++E  K     +   ++     ER   +   K + +  +
Sbjct: 264 EEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE 323

Query: 581 KANAAARERAERAAVQRAQAE--------ARERAAAEARERAERAAAEARERANAEAREK 632
                   + E+  ++  + E          E    E  E+ +    +  E   A+ + +
Sbjct: 324 LKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLE 383

Query: 633 EARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAAR 680
             R  ++    E E   + E     +   E  E+     +E      +
Sbjct: 384 SERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELK 431

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 12/188 (6%)

Query: 497 QERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKERE-KARQAV 555
            +  D E    +   +      +  +   +    +K++E++ E A+   ++ E KA  A+
Sbjct: 20  DKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELAL 79

Query: 556 ERATRE-ARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERA 614
           +    + ARE    +  L+    A++     A E+ E+   Q A  E +         RA
Sbjct: 80  QAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAEL-----RA 134

Query: 615 ERAAAEARERANAEAREKEARERASVARTEA-EALQRAERAAVQRAASEARERAAAEARE 673
           ++ A +AR+ A A+A+EK  R     + + A  A +R E    +R   EAR  AAAE  E
Sbjct: 135 KKEALKARKAA-AKAQEKVNRSLGGGSSSSAMAAFERMEEKIEER---EARAEAAAELAE 190

Query: 674 RAAAAARA 681
            +      
Sbjct: 191 GSGDDLDK 198

Length = 225

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 6/140 (4%)

Query: 469 RERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKE 528
            E++  +  R  E         A++ D       E       + +   + E   E  E E
Sbjct: 209 AEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLE---ESDDDGEEESDDESAWEGFESE 265

Query: 529 REKKRIEKEKERAREIEKEREKARQAVER---ATREARERAAAEARLKAERAAVDKANAA 585
            E        +R  + ++ +EK R+ +ER     ++ +++ A  ARLK     V +   A
Sbjct: 266 YEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKA 325

Query: 586 ARERAERAAVQRAQAEARER 605
              + E+   +  + + + R
Sbjct: 326 RARKKEQRKERGEKKKLKRR 345

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 34/119 (28%), Positives = 44/119 (36%), Gaps = 25/119 (21%)

Query: 573 KAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREK 632
           +  +AA++K  AA  ER +RA +  A+ E     AA  R   E  AA     A AEA   
Sbjct: 173 EEVQAAMEKQMAA--ERDKRAEILEAEGE---AQAAILRAEGEAEAAIILAEAEAEA--- 224

Query: 633 EARERASVARTEAEALQRAERAAVQRAASEARERAAAEA----RERAAAAARANQNQQK 687
                        E + RAE  A +  A+  RE  AA      R        A     K
Sbjct: 225 -------------EVIARAEADAAKIIAAALREAPAAPQALAQRYLEELLEIALAGNSK 270

Length = 291

>gnl|CDD|226127 COG3599, DivIVA, Cell division initiation protein [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 11/165 (6%)

Query: 516 LEREREREREEKEREKKRIEK-EKERAREIEKEREKARQAVERATREARERAAAEARLKA 574
           +  + E+  +E E  +  I++ ++E     + E  +A Q  E    E ++ A AEA    
Sbjct: 35  VIDDYEQLLDENEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQAAEAEADDIL 94

Query: 575 ERAA------VDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAE 628
           +RA+        KA   A    E A + +   + + +A  E R+R           A  E
Sbjct: 95  KRASAQAQRVFGKAQYKADRYLEDAKIAQELEDLKRQAQVE-RQRLRSDIEAQLASAKQE 153

Query: 629 AREKEARERASVARTEAEALQRAERAA---VQRAASEARERAAAE 670
             ++  R          E  +R   AA     R   E       +
Sbjct: 154 DWDEILRSTVDEVEAANEEAERLADAAQADADRLRDECDIYVDTK 198

Length = 212

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 47.5 bits (113), Expect = 4e-05
 Identities = 58/292 (19%), Positives = 82/292 (28%), Gaps = 39/292 (13%)

Query: 533 RIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAV--DKANAAARERA 590
           R      R  E++         +    RE R   A +  L  E A    D++  AA  RA
Sbjct: 736 RERARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRA 795

Query: 591 ERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQR 650
             A  Q   AE     AA     A  A  +AR     +A + +             AL+R
Sbjct: 796 AEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKR 855

Query: 651 AERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRA 710
                         E A  E R  A  AA       + ++D             A   RA
Sbjct: 856 FGDHL------HTLEVAVRELRHAATRAAEQRARAARAESDARE------AAEDAAEARA 903

Query: 711 NTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVE 770
                  +++           SVGA  +         I   L+                 
Sbjct: 904 -------EAEEASLRLRTLEESVGAMVD--------EIRARLAET-------RAALASGG 941

Query: 771 GETEERRRARL---ERHQRTQERAAKALAEKNERDLQAQRDQAERHRIAETL 819
            E      A     E   R +E+ A+A A  +ER         +    A T 
Sbjct: 942 RELPRLAEALATAEEARGRAEEKRAEADATLDERAEARDHAIGQLREFALTG 993

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 47.5 bits (113), Expect = 4e-05
 Identities = 52/263 (19%), Positives = 73/263 (27%), Gaps = 57/263 (21%)

Query: 444  AAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDRE 503
            AA  AA  +    RAE+  R A E       +A  +   ++    E +      E   R 
Sbjct: 873  AATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRT--LEESVGAMVDEIRARL 930

Query: 504  MQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR 563
             + R       R            E  + R E+++  A     ER +AR       RE  
Sbjct: 931  AETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATLDERAEARDHAIGQLREFA 990

Query: 564  ERAAAEARLK-----------AERAAVDKANAAARERAERAAVQRAQAEARERAAAEARE 612
                 E  L               AA+  A        + A    A   A  R + E  E
Sbjct: 991  LTGLLEDALPDTEVPELDAKWTIEAALKVARRTEAALLQVADDDEALDRAANRISEEYLE 1050

Query: 613  ---------------------------------------RAERAAAEARERANAEAREKE 633
                                                   R E+  A+ RE     ARE+E
Sbjct: 1051 LRRTLAALGDDAQMEPADDGLVVSLVYQGRPVTPAGLLARLEQEIAQRRELLT--ARERE 1108

Query: 634  ARER---ASVARTEAEALQRAER 653
              E      +AR     +  AER
Sbjct: 1109 LLENHLQGEIARHLQSLILAAER 1131

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional

 Score = 47.2 bits (112), Expect = 4e-05
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)

Query: 515 RLEREREREREEKEREKKRIEKE-----KERAR----EIEKEREKARQAVERATREARER 565
           + ER+ E  ++  +RE K ++KE     KE AR    EIE+E +  RQ +++      ER
Sbjct: 50  KAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTER 109

Query: 566 AAAEAR----LKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARER-AERAAAE 620
           A +  R    L ++   ++    +  ++++    +  Q E  E       ER A  + AE
Sbjct: 110 ATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAE 169

Query: 621 ARERANAEAREKEARERASVAR-TEAEALQRAERAAVQRAASEARERAAAE 670
           ARE   AE   K   E A+  R  E E   R+++ A +   ++A +R A E
Sbjct: 170 AREIILAETENKLTHEIATRIREAEREVKDRSDKMA-KDLLAQAMQRLAGE 219

Length = 535

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 46.1 bits (110), Expect = 5e-05
 Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 17/134 (12%)

Query: 444 AAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDRE 503
                   +EA  R   K    +E++        R+RE    ++EER  ++ A+E  +RE
Sbjct: 215 RKERQKEKEEAEKRRRQK----QELQ--------RAREEQIEEKEERLQEERAEEEAERE 262

Query: 504 MQQREKGEEQRRLEREREREREEKEREKKR-IEK---EKERAREIEKEREKARQAVERAT 559
               EK  E   LE+E   +R  K  E +R +E+   EKE  R  E+E E       R  
Sbjct: 263 R-MLEKQAEDEELEQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREE 321

Query: 560 REARERAAAEARLK 573
              R+    E R +
Sbjct: 322 EAERQARIEEERQR 335

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 46.6 bits (111), Expect = 5e-05
 Identities = 39/235 (16%), Positives = 73/235 (31%), Gaps = 8/235 (3%)

Query: 438 DVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQ 497
            +E+ IA+  A  ++ A D  + + +   ++  R    A   +E  Q  R         +
Sbjct: 70  SLETEIASLEAQLIETADDLKKLR-KQIADLNARL--NALEVQEREQRRRLAEQLAALQR 126

Query: 498 ERLDREMQQREKGEEQRRLERERERERE---EKEREKKRIEKEKERAREIEKEREKARQA 554
              +         E+ +R  R           +      ++   ++   +  E    +  
Sbjct: 127 SGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAE 186

Query: 555 VERATREARERAAAEARLKAERA-AVDKANAAARERAERAAVQRAQAEARERAAAEARER 613
           +     E R + A  A+L  ER   + + N+      ++    RA     +   A A   
Sbjct: 187 LTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAA 246

Query: 614 AERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAA 668
           A +A  EA   A A A    A E      T           +        R + A
Sbjct: 247 AAKAR-EAAAAAEAAAARARAAEAKRTGETYKPTAPEKMLISSTGGFGALRGQLA 300

Length = 420

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.2 bits (112), Expect = 5e-05
 Identities = 30/131 (22%), Positives = 38/131 (29%)

Query: 551 ARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEA 610
           A  A  RA       A      + + AA   A   A+  A  +A  R      +  A   
Sbjct: 416 AAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSG 475

Query: 611 RERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAE 670
              A  + A          R          A  +A A   A R     AA+     A   
Sbjct: 476 SASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPP 535

Query: 671 ARERAAAAARA 681
               AA AARA
Sbjct: 536 TPAAAAPAARA 546

Length = 830

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 12/185 (6%)

Query: 451 MKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKG 510
            +      E +    +E   R   +     E+     E+   +++  + L  E +  E  
Sbjct: 3   AEREQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLL--EKKADELE 60

Query: 511 EEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEA 570
           EE RRLE E     EE+ER +  ++         E   E A+   ER  +EA E    + 
Sbjct: 61  EENRRLEEEAAASEEERERLEAEVD---------EATAEVAKLEEEREKKEA-ETRQLQQ 110

Query: 571 RLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAR 630
            L+  + A ++A     E A         A        E  +  E A+A+     + + R
Sbjct: 111 ELREAQEAHERARQELLEAAAAPTAPPHVAAPVNGEQLEPDDNGEEASADLETDPDMKDR 170

Query: 631 EKEAR 635
            +E R
Sbjct: 171 SEEER 175

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|213754 TIGR02971, heterocyst_DevB, ABC exporter membrane fusion protein, DevB family

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 33/158 (20%), Positives = 53/158 (33%), Gaps = 8/158 (5%)

Query: 539 ERAREIEKEREKARQAVERATREARERAAAEARLK--AERAAVDKANAAARERAERAAVQ 596
           +   E   E + AR  ++ A     +  A   + +  A+RAA   A       A++A + 
Sbjct: 48  DSRPERTAELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLN 107

Query: 597 RAQAEARERAAAEARERAERAAAEARERA--NAEAREKEARERASVARTEAEALQRAERA 654
           R +AE         R R+             +   + + A E    A           RA
Sbjct: 108 RLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALASRSEQIDGARA 167

Query: 655 AVQRAASEARE----RAAAEARERAAAAARANQNQQKN 688
           A+   A E RE     A AE +    A  +A    +  
Sbjct: 168 ALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLELT 205

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members. Length = 327

>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827)

 Score = 46.5 bits (110), Expect = 5e-05
 Identities = 56/282 (19%), Positives = 98/282 (34%), Gaps = 15/282 (5%)

Query: 428 NEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDR 487
            EY  +    D     A  +  A K    + E   +    M+E      A   E+ +   
Sbjct: 135 QEYDALVEERDAALKRAEEAICASKVNEKKVEELTKEIIAMKESLERAHAAHLEAEEERI 194

Query: 488 EERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIE------KEKERA 541
                +   +E  ++E+++ EK  E+ + + + E++ E+       +E            
Sbjct: 195 GAALEKDQDRETYEKELKEAEKELERLKQDLDPEKDLEKLAEASAELESLQKEISIMASV 254

Query: 542 REIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARER-AERAAVQRAQA 600
             + KE E+A+  +E+A  E +        LK E     K     RE+  E      +  
Sbjct: 255 ASVLKELEEAKANLEKAAEEEKSLRNLVESLKQELEEEKKELEELREKEGEAEEAASSLE 314

Query: 601 EARERAAAEARERAERAAAE--------ARERANAEAREKEARERASVARTEAEALQRAE 652
               R  +E   +A     E        + E   A    + ARE     + EAE  + A 
Sbjct: 315 AELNRTKSEKESKAREKMVEIPLKLQQASSEAEEARKEAEAAREELRKLKEEAEQTKAAL 374

Query: 653 RAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLES 694
             A  R  +  +E  AA+A E  A A      + +     +S
Sbjct: 375 ETAELRLEAALKEAEAAKAAEALALAEIKALQESEESAKADS 416

This family consists of several plant proteins of unknown function. Several sequences in this family are described as being "myosin heavy chain-like". Length = 484

>gnl|CDD|180941 PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 6/119 (5%)

Query: 572 LKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEARE 631
           L+  R A+ +A   A ER  +AA   A+A+ +    A+A++ AER  A+A+ RA A   E
Sbjct: 48  LEERREAILQALKEAEERLRQAAQALAEAQQK---LAQAQQEAERIRADAKARAEAIRAE 104

Query: 632 KEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAA--ARANQNQQKN 688
            E +    +AR +  A      A  +R  ++ R  AA  A  +A +    R +++ Q+ 
Sbjct: 105 IEKQAIEDMARLKQTAAADL-SAEQERVIAQLRREAAELAIAKAESQLPGRLDEDAQQR 162

Length = 174

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 46.3 bits (110), Expect = 7e-05
 Identities = 52/262 (19%), Positives = 89/262 (33%), Gaps = 12/262 (4%)

Query: 415 LEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRER--- 471
           LE    S ++ +  E     +  +   + AA +  A++EA  R E + R   E   R   
Sbjct: 320 LEALQGSPAYQDAEELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDD 379

Query: 472 --ESFKAAR---SRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREE 526
                +AAR   +R + +       T +       +E+Q+    + +R+       +R E
Sbjct: 380 AERELRAAREQLARAAERAGLSPAHTAEPDAALAAQELQELGALDARRQDADRVIAQRSE 439

Query: 527 KEREKKRIEKEKERAREIEKEREKARQ--AVERATREARERAAAEA-RLKAERAAVDKAN 583
           +    +R +   +RA          R     E     AR   A EA   +  R A   A 
Sbjct: 440 QVALLRRRDDVADRAEATHAAARARRDELDEEAEQAAARAELADEAVHREGARLAWVDAW 499

Query: 584 AAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVART 643
            A        AV        +  + +A  + E     A   A     ++  RERA++ R 
Sbjct: 500 QAQLRELTILAVDDQPGALADLDSWDALLQGEAPVRVAVYSAVQPLADELTRERAAL-RL 558

Query: 644 EAEALQRAERAAVQRAASEARE 665
             E L+    A         + 
Sbjct: 559 AEEVLEEERDALRTERERLEQG 580

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 46.6 bits (111), Expect = 7e-05
 Identities = 48/195 (24%), Positives = 92/195 (47%), Gaps = 18/195 (9%)

Query: 449 AAMKEAMDRAEAKFRHA-KEMRER--ESFKAARSR-ESVQPDREERATQQDAQERLDREM 504
           A +++ +D  E +     KE+ E   ES +    R + ++P   E    +DA++ L+RE 
Sbjct: 559 AELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREE 618

Query: 505 QQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKE--REKARQAVERATREA 562
                 +E ++LE E ++  EE    +KR+E+ ++   E+EK+   E+  +  E     +
Sbjct: 619 ------KELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELS 672

Query: 563 RERAAAEARLKAERAAVDKANAAARE-RAERAAVQRAQAEAR--ERAAA---EARERAER 616
           RE A   A L+      ++      + + E    ++A+ E    E+A     E RE+ ++
Sbjct: 673 RELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKK 732

Query: 617 AAAEARERANAEARE 631
             A  +ERA ++  E
Sbjct: 733 YKALLKERALSKVGE 747

Length = 880

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 46.1 bits (110), Expect = 9e-05
 Identities = 42/208 (20%), Positives = 69/208 (33%), Gaps = 20/208 (9%)

Query: 444 AAASAAAMKEAMDRAEAKFRHAKE-MRERESFKAARSRESVQPDR------EERATQQDA 496
           A      +   + R+EA    A+E +R     +     E +Q  R      E+R  QQ  
Sbjct: 478 AYQLVRKIAGEVSRSEAW-DVARELLRRLREQRHLA--EQLQQLRMRLSELEQRLRQQQR 534

Query: 497 QERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAR--EIEKEREKARQA 554
            ERL  E  +R         E E+ +E  E   E       + R R   + ++ E+ +  
Sbjct: 535 AERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQAR 594

Query: 555 VERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERA 614
           ++R    A    AA+  L   R           E ++       Q   RER     R+  
Sbjct: 595 IQRLAARAPAWLAAQDALARLREQS----GEEFEDSQDVTEYMQQLLERERELTVERDE- 649

Query: 615 ERAAAEARERANAEAREKEARERASVAR 642
               A  ++  + E         +   R
Sbjct: 650 ---LAARKQALDEEIERLSQPGGSEDPR 674

Length = 1486

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 1e-04
 Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 16/194 (8%)

Query: 451  MKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKG 510
            +++ ++  E +    +E       K     E ++   +E    ++  E L+ E ++ E  
Sbjct: 826  LEQEIEELEEEIEELEE-------KLDELEEELEELEKELEELKEELEELEAEKEELEDE 878

Query: 511  EEQRRLERER-EREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAE 569
             ++   E+E  E E  E E E   +++E E+ RE  +E E   + +E    E  E    E
Sbjct: 879  LKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEE 938

Query: 570  ARLKAERAAVDKANAAARERAERAAV------QRAQAEARERAAAEARERAERAAAEARE 623
                 E     +      E      V      +  + E R       RE  E A  +  E
Sbjct: 939  YEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLE 998

Query: 624  RANAEAREKEARER 637
                E  +KE RER
Sbjct: 999  V--IEELDKEKRER 1010

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.8 bits (109), Expect = 1e-04
 Identities = 45/224 (20%), Positives = 82/224 (36%), Gaps = 12/224 (5%)

Query: 471 RESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKERE 530
            E  +  R RE ++  + E ++ Q    R++  +   E  +E     R+     +E E+ 
Sbjct: 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLD--ELSQELSDASRKIGEIEKEIEQL 728

Query: 531 KKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERA 590
           ++  EK KER  E+E++     Q +E    E +E  A    L+ +   +++A      R 
Sbjct: 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788

Query: 591 ERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQR 650
             + +   QAE  +          E +  EAR R   E +             E + LQ 
Sbjct: 789 SHSRIPEIQAELSK-------LEEEVSRIEARLRE-IEQKLNRLTLEKEYLEKEIQELQE 840

Query: 651 AERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLES 694
                 ++  S  +E      ++            +    DLES
Sbjct: 841 QRIDLKEQIKSIEKEIENLNGKKEELEEELE--ELEAALRDLES 882

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.4 bits (108), Expect = 1e-04
 Identities = 48/242 (19%), Positives = 88/242 (36%), Gaps = 33/242 (13%)

Query: 465 AKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERERERER 524
            K + E E      +++ ++   EE   +   +E++     +    E     +     + 
Sbjct: 264 EKRLEEIEQLLEELNKK-IKDLGEEEQLR--VKEKIGELEAEIASLERSIAEKERELEDA 320

Query: 525 EEKERE-KKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKAN 583
           EE+  + +  I+K      E+E+E E+ R+  ++ T E  E       L+AE   VDK  
Sbjct: 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF 380

Query: 584 AAARERA------------ERAAVQRAQAEARERA--AAEARERAERAAAEARERANA-E 628
           A  R+              E   ++R     +E     +E       A A    + N  E
Sbjct: 381 AETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE 440

Query: 629 AREKEARERASVARTEAEALQ-------------RAERAAVQRAASEA-RERAAAEARER 674
             +++          + E L              + E   V++  S+  RE A AEA+ R
Sbjct: 441 EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500

Query: 675 AA 676
           A+
Sbjct: 501 AS 502

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 45.5 bits (109), Expect = 1e-04
 Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 25/176 (14%)

Query: 488 EERATQQDAQERLDREMQQREK----GEEQRRLEREREREREEKEREKKRIEKEKERA-- 541
           EE A +   + + + E  ++E      EE  +L  E E+E  E+  E     ++ E+   
Sbjct: 37  EEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNE----LQKLEKRLL 92

Query: 542 -RE--IEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRA 598
            +E  ++++ E   +  E   ++ +E    +  L+ +   +++      +  ER +    
Sbjct: 93  QKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERIS-GLT 151

Query: 599 QAEARERAAAEARERAERAAA----EARERANAEAREKEARERASVARTEAEALQR 650
             EA+E    +  E A   AA    E  E A  EA +K+A+E        A+A+QR
Sbjct: 152 AEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEA-DKKAKE------ILAQAIQR 200

Length = 520

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 2/117 (1%)

Query: 459 EAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQER-LDREMQQREKGEEQRRLE 517
           E K+    E +E  + + A+ RE  +  +    T +  + R +    +  E   E   ++
Sbjct: 274 ERKYPLTDEFKEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIK 333

Query: 518 REREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKA 574
           + R  E+ E +  KK I  +K RA E E  RE  ++      R    RAA +A+ K 
Sbjct: 334 KTRTAEKNEAKARKKEI-AQKRRAAEREINREARQERAAAMARARARRAAVKAKKKG 389

Length = 429

>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 46/156 (29%), Positives = 66/156 (42%), Gaps = 10/156 (6%)

Query: 485 PDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREI 544
           P  E  A      E L RE       E+  R   E +       RE   +   K   R++
Sbjct: 180 PKAEALAAAPARAETLARE------AEDAARAADEAKTAAAAAAREAAPL---KASLRKL 230

Query: 545 EKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARE 604
           E+ + +A   ++RA +        EA+ +AE     KA   A E A +    +A AEA+ 
Sbjct: 231 ERAKARADAELKRADKALAAAKTDEAKARAE-ERQQKAAQQAAEAATQLDTAKADAEAKR 289

Query: 605 RAAAEARERAERAAAEARERANAEAREKEARERASV 640
            AAA  +E A+ AAA+  E A A    K A E  S+
Sbjct: 290 AAAAATKEAAKAAAAKKAETAKAATDAKLALEPVSI 325

Length = 508

>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone

 Score = 46.2 bits (109), Expect = 1e-04
 Identities = 52/267 (19%), Positives = 102/267 (38%), Gaps = 17/267 (6%)

Query: 446 ASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPD---REERATQQDAQERLDR 502
                +++ +D  + + +   EM + +   A    E  +     RE    Q   +  L++
Sbjct: 142 LRMERLQQTLDARDEEIKKLLEMLQSKGLSAKAEEEDSERLGRIREAEDQQSHLEVLLEQ 201

Query: 503 EMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREA 562
           + ++     E+   + + ER+  + E  +K I+++  + +E EK  EKA   + R     
Sbjct: 202 KEKEHMMLREEIHQKLQMERDDAKTEASQKLIDEKDTKIKEFEKMLEKAENEIYRLQSRC 261

Query: 563 RERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEAR 622
               A   RL  E  A   A AA + + +RAA + ++ +          E      ++ R
Sbjct: 262 DTSEADRNRLDKEVEAERSALAAMKAKCDRAAQELSRKKTELLGLQTELETLANQDSDMR 321

Query: 623 ERANAEAREKEARE-RASVARTEAEAL-QRAERAAVQRAASEARERAAAEARERAAA--- 677
           +  +    +    E   ++ +TE +AL    ER         A  +AA E +   A    
Sbjct: 322 QHLDKLKEDLTRAEQEKAILQTEVDALRYELERKHNTLTKKTASLQAAQEEKATYAGEIE 381

Query: 678 ---------AARANQNQQKNDNDLESF 695
                      +    Q+K +N  E+F
Sbjct: 382 DMRDRYEKTERKLRVLQKKIENLQETF 408

This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains. Length = 774

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 45.3 bits (108), Expect = 1e-04
 Identities = 39/126 (30%), Positives = 51/126 (40%), Gaps = 3/126 (2%)

Query: 566 AAAEARLKA--ERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARE 623
           A A++ L A    AA   A A     A  AAV R  A A E A     E A+R  A+  +
Sbjct: 42  ALADSDLAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLV-EHAKRLTAQREQ 100

Query: 624 RANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQ 683
                A       +A  A  E  A + A R   + AA+  R R  A+A    A A +A  
Sbjct: 101 LVARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARI 160

Query: 684 NQQKND 689
            +  ND
Sbjct: 161 ERIVND 166

Length = 484

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 505 QQREKGEEQRRLERE-REREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR 563
           + + + ++ RR +RE  E EREE+++ +++ E E++   E+E+EREK ++  ER  RE +
Sbjct: 8   RAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQ 67

Query: 564 ERAAAEARLK 573
            R   E   K
Sbjct: 68  ARKEQEEYEK 77

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function unknown]

 Score = 45.8 bits (108), Expect = 1e-04
 Identities = 64/353 (18%), Positives = 112/353 (31%), Gaps = 31/353 (8%)

Query: 373 ETGNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQIDELEDFAMSRSWNNVNEYGE 432
           +  N  K  N    +  + Q        RAG  ++AA+   E       R+       G 
Sbjct: 266 DPVNGAKALNRQFHYLTAAQLEQIAALQRAGDTAAAAAAAAEAAAAMDDRTARVKENMGT 325

Query: 433 VPSPEDVESSIAAASAAAMKEAM-DRAEAKFRHAKEMRERESFKAARSRESVQPDREERA 491
           + +  D  +  A     A+     +  +A    AK   E+ +   A+        R + A
Sbjct: 326 LETAWDALADAAKKMWDAVLGIGREDKQAALLAAKLAAEKLARVTAQGA---LNARLKLA 382

Query: 492 TQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEK---ERAREIEKER 548
                Q  L+     +   +E     RE E E    + E++ I K        R   +E 
Sbjct: 383 QDDLTQAELNYAAADQAANQEGALNAREDEAEVLSTQEERRDILKNLLADAEKRTARQEE 442

Query: 549 EKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAA 608
                A  +  +  +   A +  +    A      AAA    E+         A ++  A
Sbjct: 443 LNKALAKAKILQADKAAKAYQEDILQREAQSRGKTAAAERSQEQMTAALKALLAFQQQIA 502

Query: 609 EARERAERAA-------------------AEARERANAEAREKEARERASVARTEAE--A 647
           +     E+A+                   A+ R+    +A  +  +E        AE   
Sbjct: 503 DLSGAKEKASDQKSLLWKAEEQYALLKEEAKQRQLQEQKALLEHKKETLEYTSQLAELLD 562

Query: 648 LQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSS 700
            Q        +AA   +ER +   RE   A A+      K  N+L +++S   
Sbjct: 563 QQADRFELSAQAAGSQKERGSDLYRE---ALAQNAAALNKALNELAAYWSALD 612

Length = 833

>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 57/195 (29%)

Query: 492 TQQDAQER-----LDREMQQRE--------KGEEQRRLER-----------------ERE 521
            QQ AQER     LD   +Q E         GEE +R ER                 E +
Sbjct: 117 QQQAAQERLLAAQLDAAFRQGEHTGLQLILSGEESQRGERILAYFGYLNQARQETIAELK 176

Query: 522 REREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARER--AAAEARLKAERAAV 579
           + REE   +K  +E+++ + + +  E++  +Q +E+A R  R++     E+ L+ ++  +
Sbjct: 177 QTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQA-RNERKKTLTGLESSLQKDQQQL 235

Query: 580 DKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEAR---- 635
               +  R    R     A+AE       EA+ RAER   EARE A    ++K+A+    
Sbjct: 236 ----SELRANESRLRDSIARAER------EAKARAER---EAREAARVRDKQKQAKRKGS 282

Query: 636 -------ERASVART 643
                  ER+ ++RT
Sbjct: 283 TYKPTESERSLMSRT 297

Length = 428

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 45.4 bits (108), Expect = 2e-04
 Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 21/192 (10%)

Query: 505 QQREKGEEQRRLERERERE---REEKEREKKRIEKEKERAREIEKEREKARQAVERATRE 561
             + + + +R+ +R + R+   R+  ER   R  + +   RE  +E  + R+  ++ T E
Sbjct: 593 APKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRNRRQAQQQTAE 652

Query: 562 ARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEA 621
            RE   AE                 + R +    Q  + E + R   E R+  + A A  
Sbjct: 653 TRESQQAEV--------------TEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALN 698

Query: 622 RERANAEAREKEARERASVARTEAEALQRAER----AAVQRAASEARERAAAEARERAAA 677
            E  + +  E+E R +    R +   L +  R     A +  A    E  AAE   +   
Sbjct: 699 VEEQSVQETEQEERVQQVQPRRKQRQLNQKVRIEQSVAEEAVAPVVEETVAAEPVVQEVP 758

Query: 678 AARANQNQQKND 689
           A R    +    
Sbjct: 759 APRTELVKVPLP 770

Length = 1068

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 5/154 (3%)

Query: 521 EREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVD 580
           E  +EE E+E K  +K +E    +E+  EK  + +        E +        +    +
Sbjct: 197 ELLQEEYEKEVKAEKKRQE----LERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEE 252

Query: 581 KANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASV 640
             + +A E  E       +    +R     R + E+   E    A  E + K+   + + 
Sbjct: 253 SDDESAWEGFESEYEPINKPVRPKRKTKAQRNK-EKRRKELEREAKEEKQLKKKLAQLAR 311

Query: 641 ARTEAEALQRAERAAVQRAASEARERAAAEARER 674
            +  A+ + + E+A  ++           + + R
Sbjct: 312 LKEIAKEVAQKEKARARKKEQRKERGEKKKLKRR 345

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 9/130 (6%)

Query: 533 RIEKEKERAREIEKEREKARQAVERATREA-------RERAAAEARLKAERAAVDKANAA 585
           R E     A +  +  ++A+ A   A REA       R+   A+AR  AE    DKA AA
Sbjct: 191 RAETLAREAEDAARAADEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALAA 250

Query: 586 ARERAERAAVQRAQAEARERAA-AEARERAERAAAEARERANAEAREKEARERASVARTE 644
           A+    +A  +  Q +A ++AA A  +    +A AEA+  A A  +E  A+  A+     
Sbjct: 251 AKTDEAKARAEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKE-AAKAAAAKKAET 309

Query: 645 AEALQRAERA 654
           A+A   A+ A
Sbjct: 310 AKAATDAKLA 319

Length = 508

>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 8/130 (6%)

Query: 540 RAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERA-----A 594
           RA  + +E E A +A + A   A   A   A LKA    +++A A A    +RA     A
Sbjct: 191 RAETLAREAEDAARAADEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALAA 250

Query: 595 VQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERA 654
            +  +A+AR   A E +++A + AAEA  + +    + EA+  A+ A  EA     A++A
Sbjct: 251 AKTDEAKAR---AEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKAAAAKKA 307

Query: 655 AVQRAASEAR 664
              +AA++A+
Sbjct: 308 ETAKAATDAK 317

Length = 508

>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 34/122 (27%), Positives = 46/122 (37%), Gaps = 26/122 (21%)

Query: 564 ERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARE 623
            +AA E ++ A             ER +RA +  A+    E  AA  R   E  AA    
Sbjct: 175 VQAAMEKQMAA-------------ERDKRAEILEAEG---EAQAAILRAEGEAEAAIILA 218

Query: 624 RANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQ 683
            A AEA          +AR EA+A +    AA  R A  A +  A    E     A A  
Sbjct: 219 EAEAEAEV--------IARAEADAAKII--AAALREAPAAPQALAQRYLEELLEIALAGN 268

Query: 684 NQ 685
           ++
Sbjct: 269 SK 270

Length = 291

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 47/174 (27%), Positives = 68/174 (39%), Gaps = 20/174 (11%)

Query: 521 EREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVD 580
           E ERE++E E        ER  ++E++  +A++ +E     A E      + + E   ++
Sbjct: 2   EAEREQQELE--------ERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLE 53

Query: 581 -KANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERAS 639
            KA+    E         A  E RER  AE  E     A    ER   E +E E R+   
Sbjct: 54  KKADELEEENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEER---EKKEAETRQ--- 107

Query: 640 VARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLE 693
             + E    Q A      RA  E  E AAA       AA    +  + +DN  E
Sbjct: 108 -LQQELREAQEAHE----RARQELLEAAAAPTAPPHVAAPVNGEQLEPDDNGEE 156

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 12/153 (7%)

Query: 533 RIEKEK----ERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARE 588
           R   E+    E A E+ +E   +R+ +        E A   A L    + +++   AA +
Sbjct: 276 RHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASD 335

Query: 589 RAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEAL 648
                     Q E  ER  A+  E  ER   E +     EA E++    A     E E  
Sbjct: 336 HLNLVQTALRQQEKIERYQADLEELEERL--EEQNEVVEEADEQQEENEARAEAAEEEVD 393

Query: 649 Q-RAERAAVQRAASEARERA-----AAEARERA 675
           + +++ A  Q+A    + RA     A +A ERA
Sbjct: 394 ELKSQLADYQQALDVQQTRAIQYQQAVQALERA 426

Length = 1486

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 475 KAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRI 534
           K     E  Q  R++R  ++  +ER +R+  + ++  E++  E   E   ++KE E+++ 
Sbjct: 6   KKRAKLEEKQARRQQREAEE--EEREERKKLEEKREGERKEEEELEEEREKKKEEEERKE 63

Query: 535 EKEKERAREIEKEREKARQAVE 556
            +E+ R  + E E+ K+   VE
Sbjct: 64  REEQARKEQEEYEKLKSSFVVE 85

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 45.0 bits (107), Expect = 2e-04
 Identities = 40/203 (19%), Positives = 70/203 (34%), Gaps = 21/203 (10%)

Query: 487 REERATQQDAQERLDREMQQREKGE---EQRRLEREREREREEKEREKKRIEKEKERARE 543
             +    +    RL  E   +   E   +    E     E  + ++      K   RA+ 
Sbjct: 87  ESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQL 146

Query: 544 IEKEREKARQAVERATREARERAAAEA-RLKAERAAVDKANAAARERAERAAVQRAQAEA 602
                +  +   E A  +A+ +A  +   + +E         A R+  E+  V R +   
Sbjct: 147 ELILAQIKQLEAELAGLQAQLQALRQQLEVISEELE------ARRKLKEKGLVSRLELLE 200

Query: 603 RERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASE 662
            ER  AEA+           E    EA  +  + +    + E + +++  R  V    +E
Sbjct: 201 LERERAEAQ----------GELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTE 250

Query: 663 ARERAAAEARERAAAAARANQNQ 685
           A+ R  AE RER   A    Q  
Sbjct: 251 AQAR-LAELRERLNKARDRLQRL 272

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 34/207 (16%)

Query: 453 EAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQ-ERLDREMQQREKGE 511
           EA  +A  +F    ++   E        +  Q   E R +   AQ E +  +++Q E   
Sbjct: 103 EADSQAAIEF--PDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQLELILAQIKQLEA-- 158

Query: 512 EQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEAR 571
                E    + + +  R++  +  E+  AR   KE+      V R      ER  AEA+
Sbjct: 159 -----ELAGLQAQLQALRQQLEVISEELEARRKLKEK----GLVSRLELLELERERAEAQ 209

Query: 572 LKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERAN-AEAR 630
                          R  AE   ++R   E +       ++  +    E  E    A+AR
Sbjct: 210 -----------GELGRLEAELEVLKRQIDELQLE----RQQIEQTFREEVLEELTEAQAR 254

Query: 631 EKEARERASVARTEAEALQRAE-RAAV 656
             E RER + AR   + LQR   R+ V
Sbjct: 255 LAELRERLNKAR---DRLQRLIIRSPV 278

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 44.6 bits (105), Expect = 2e-04
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 15/151 (9%)

Query: 474 FKAARSRESVQ---PDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKERE 530
           F + R+ E +    PD  E   ++   E  +RE + + K ++  RL+R  +  ++   R 
Sbjct: 173 FDSWRTFEPLDEDYPDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRI 232

Query: 531 KKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERA 590
           K              KE+EK  + + +  REA  R  A A LK +  A +KA   A   A
Sbjct: 233 K------------SFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALA 280

Query: 591 ERAAVQRAQAEARERAAAEARERAERAAAEA 621
              AV++   E  ++A    ++  + AA +A
Sbjct: 281 SATAVKKKAKEVMKKALKMEKKAIKNAAKDA 311

Length = 379

>gnl|CDD|224455 COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 2/103 (1%)

Query: 560 REARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERA-- 617
           R      AAEA  KA RA ++ A  +       A      A+ +   A E    AE    
Sbjct: 126 RVRANVRAAEAAAKAARAQLEAARLSLAAEVATAYFDLLAAQEQLALAEETLAAAEEQLE 185

Query: 618 AAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAA 660
            AE R  A    R    +  A +A   A+      + A  R A
Sbjct: 186 LAEKRYDAGLATRLDVLQAEAQLASARAQLAAAQAQLAQARNA 228

Length = 457

>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 39/143 (27%), Positives = 47/143 (32%), Gaps = 22/143 (15%)

Query: 565 RAAAE--ARLKAERAAVDKA-----NAAAR---------ERAERAAVQRAQAEAR----E 604
            AA E   R    R   DKA      A AR            E    + A  E      E
Sbjct: 380 VAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALE 439

Query: 605 RAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQ--RAERAAVQRAASE 662
           R AA   +  ER A    E A  EA       R    +   EA+   RAE  A   A ++
Sbjct: 440 REAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPAD 499

Query: 663 ARERAAAEARERAAAAARANQNQ 685
                 A+  E  AA A A   +
Sbjct: 500 DDAALRAQLAELEAALASAQGEE 522

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 852

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 475 KAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRI 534
           +  R R     ++      +     L+ E+Q  +  E    LE E     EE E+ +K I
Sbjct: 69  QEIRERIKRAEEKLSAVKDERELRALNIEIQIAK--ERINSLEDELAELMEEIEKLEKEI 126

Query: 535 EKEKERAREIEKEREKARQAVERATREARE 564
           E  KER   +EK   +A   +E    E RE
Sbjct: 127 EDLKERLERLEKNLAEAEARLEEEVAEIRE 156

Length = 239

>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion]

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 576 RAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERA-----NAEAR 630
           +        A  ER  + A   A+AE  +  A       E+   EARE+A      A+  
Sbjct: 25  KFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKE 84

Query: 631 EKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARA 681
            ++  E    A  E E  +  E A  +  A   +ERA  E R   A  A A
Sbjct: 85  AEQIAEEI-KAEAEEELERIKEAAEAEIEA--EKERALEELRAEVAELAVA 132

Length = 161

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 13/182 (7%)

Query: 512 EQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEAR 571
           EQ+ LE   E+  E+  R +K +E+ +E A E+E++ ++  +  +   ++A E      R
Sbjct: 6   EQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRR 65

Query: 572 LKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEARE 631
           L+ E      A A+  ER ER   +  +A A      E RE+ E   AE R+    +   
Sbjct: 66  LEEE------AAASEEER-ERLEAEVDEATAEVAKLEEEREKKE---AETRQ---LQQEL 112

Query: 632 KEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDND 691
           +EA+E    AR E      A  A    AA    E+   +     A+A        K+ ++
Sbjct: 113 REAQEAHERARQELLEAAAAPTAPPHVAAPVNGEQLEPDDNGEEASADLETDPDMKDRSE 172

Query: 692 LE 693
            E
Sbjct: 173 EE 174

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|147845 pfam05914, RIB43A, RIB43A

 Score = 44.3 bits (105), Expect = 3e-04
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 489 ERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKER 548
             A ++  Q+   RE  +++  E Q+    E++ +      ++ R+E +  RA+E+    
Sbjct: 148 NEADRKKMQQEQQREWLEQQVQERQQAKAAEKQADTLH---DQLRVELDH-RAQELASLE 203

Query: 549 EKARQAVERATREARERAAAEARLKAERA 577
           E+ R+AVE+AT +  +  A E R +  R 
Sbjct: 204 EECRRAVEQATADFNKALAEEQRERERRE 232

This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterized in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells. Length = 379

>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523)

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 47/221 (21%), Positives = 88/221 (39%), Gaps = 22/221 (9%)

Query: 434 PSPEDVESSIAAASAAAMKEAMDRAEAKF------RHAKEMRERESFKAARSRESVQPDR 487
           PSP                       + F      R AK +RE ES   A+  ++ +  +
Sbjct: 1   PSPPASAGGGDRKGKRTRNNGPATIASGFDPTALERGAKALRELESSPHAK--KAFELSK 58

Query: 488 EERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKE 547
            +  T+Q   E    ++++ E  + Q +LER R    E ++  +++ ++E++RA+    +
Sbjct: 59  MQEKTRQAELEA---KIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQ---YQ 112

Query: 548 REKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAA 607
            E AR+  +    E + R   E     E + + +   A R   E   ++  +    E A 
Sbjct: 113 DELARKRYQ-KELEQQRRQNEELLKMQEESVLRQE--AMRRATEEEILEMRRETIEEEAE 169

Query: 608 AEARERAERAAAEAR-----ERANAEAREKEARERASVART 643
            E      +  AEAR     ER N +   +  + +A+  R 
Sbjct: 170 LERENIRAKIEAEARGRAKEERENEDINREMLKLKANEERE 210

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.2 bits (105), Expect = 3e-04
 Identities = 32/135 (23%), Positives = 38/135 (28%), Gaps = 2/135 (1%)

Query: 547 EREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERA 606
           ER + R  V          AAA +   A  AA     AAA   A   A   A   A   A
Sbjct: 379 ERLERRLGVAGGAGAPA--AAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPA 436

Query: 607 AAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARER 666
            A A       A      +   A    A+   + A         A       A + A   
Sbjct: 437 PAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAA 496

Query: 667 AAAEARERAAAAARA 681
            AA A    A  A  
Sbjct: 497 PAAPAAPAGADDAAT 511

Length = 824

>gnl|CDD|148617 pfam07111, HCR, Alpha helical coiled-coil rod protein (HCR)

 Score = 44.3 bits (104), Expect = 3e-04
 Identities = 62/232 (26%), Positives = 101/232 (43%), Gaps = 14/232 (6%)

Query: 512 EQRRLEREREREREEKEREKKRIEKEKERAREI-EKERE---KARQAVERATREARER-A 566
           E R+L  ER R   E +   + I++E  RARE  E+ER+   +  Q +ER  +E++E  A
Sbjct: 479 ELRQLREERNRLDAELQLSARLIQQEVGRAREQGEEERQRLAEVAQQLERELQESQESLA 538

Query: 567 AAEARLKAERAAV-DKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERA 625
           +A A+L+A RA   +    AA  R E    Q    +A +   AE   R     ++   R 
Sbjct: 539 SAGAQLEAARAGQQESTEEAASLRQELTQQQEVYGQALQEKVAEVETRLREQLSDTERRL 598

Query: 626 NAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQ 685
           N EAR + A+   S+ + + +A Q  ER       ++   R   EAR+           +
Sbjct: 599 N-EARREHAKAVVSLRQIQRQAAQEKER-------NQELRRLQEEARKEEGQRLSRRLQE 650

Query: 686 QKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASS 737
            + D +L     +   PSS  +  +        S+S     P R +  G+ +
Sbjct: 651 LERDKNLMLQRLLRVLPSSVNKKPSPRPIESSSSESLPAAFPGRESQKGSLT 702

This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation. Length = 739

>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion]

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 9/114 (7%)

Query: 517 EREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARE-----RAAAEAR 571
             + E +    E E++  E  ++ +  IE+ +++A Q  E    EA E     + AAEA 
Sbjct: 51  RLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAE 110

Query: 572 LKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERA-ERAAAEARER 624
           ++AE+   ++A    R      AV  A+    ++    A++   +   AE  E 
Sbjct: 111 IEAEK---ERALEELRAEVAELAVAIAEKLLGKKVDEAAQKDLIDAFIAELGEN 161

Length = 161

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 43.9 bits (103), Expect = 4e-04
 Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 10/175 (5%)

Query: 519 EREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAA 578
           + +  R +    +  +   +   R  E ERE AR  +++A    +ER A    L A R  
Sbjct: 75  QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKA---RQEREAVRQELAAARQN 131

Query: 579 VDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERA 638
           + KA        ++A  Q  Q   +  A    +  A+  + +A ++    +  +   +  
Sbjct: 132 LAKAQQELARLTKQA--QDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVL 189

Query: 639 SVARTEAEALQRAERAAVQRAASEARE-----RAAAEARERAAAAARANQNQQKN 688
            +    A+  Q A+  A +  A++AR      RAAA  +   A   R  Q  QK 
Sbjct: 190 DLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKA 244

Length = 499

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 15/145 (10%)

Query: 517 EREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERA---------- 566
           E+E + E++ +E E+   +K ++ A E  +  E +   +E +  +  E +          
Sbjct: 204 EKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFE 263

Query: 567 -AAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERA 625
              E   K  R          +E+  +   + A+ E + +       R +  A E  ++ 
Sbjct: 264 SEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKE 323

Query: 626 NAEAREKEARERASVARTEAEALQR 650
            A AR+KE R+     R E + L+R
Sbjct: 324 KARARKKEQRK----ERGEKKKLKR 344

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 489 ERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKER 548
           +   ++ A+    +  +Q+ + EE+ R ER++    EEK   +++ E+E E  RE +KE 
Sbjct: 2   KIGAKKRAKLEEKQARRQQREAEEEEREERKK---LEEKREGERKEEEELEEEREKKKEE 58

Query: 549 EKARQAVERATREARE 564
           E+ ++  E+A +E  E
Sbjct: 59  EERKEREEQARKEQEE 74

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family

 Score = 43.8 bits (104), Expect = 4e-04
 Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 8/107 (7%)

Query: 551 ARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAV---QRAQAEARERAA 607
           ++ A   A  + R R AA   L+ E  A+++  A   +  ER A    + A  EA E AA
Sbjct: 413 SQNATPAALEDLRRRIAA---LELELDALEREAALGADHDERLAELRAELAALEA-ELAA 468

Query: 608 AEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERA 654
            EAR + E+   EA     AE            A   A+ L   E A
Sbjct: 469 LEARWQQEKELVEAILALRAELEADADAPADDDAALRAQ-LAELEAA 514

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 852

>gnl|CDD|181646 PRK09098, PRK09098, type III secretion system protein HrpB; Validated

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 41/134 (30%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 541 AREIEKEREKARQAV--ERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRA 598
           A       + A  AV  ER    A  RA AE  +   RA  +    AAR  A+R+A +R 
Sbjct: 23  AFATVLALDAALAAVHAERDAVLAAARARAERIVAEARAQAEAILEAARREADRSA-RRG 81

Query: 599 QAEARERAAAEARER-AERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQ 657
            A    +A AE   R A+ A AE R       R  E      VA    + +   +RAA+ 
Sbjct: 82  YAAGLRQALAEWHARGADHAFAERRAARRMRERLAEI-----VAAAVEQIVLGEDRAALF 136

Query: 658 RAASEARERAAAEA 671
             A++  ER    A
Sbjct: 137 ARAAQTLERVVDGA 150

Length = 233

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 43.8 bits (103), Expect = 4e-04
 Identities = 25/137 (18%), Positives = 39/137 (28%), Gaps = 3/137 (2%)

Query: 547 EREKARQAVERATREARERAAAEARLKAERAAVDKANAAAR-ERAERAAVQRAQAEARER 605
           E  +     E    E  E     A     + A     +    E    A ++R Q      
Sbjct: 322 EPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAG 381

Query: 606 AAAEARERAERAAAEARERANAEAREKEARERASVARTEA--EALQRAERAAVQRAASEA 663
            A  A +    AA+ A E   A A E        V    A      + +  AV     + 
Sbjct: 382 QAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDP 441

Query: 664 RERAAAEARERAAAAAR 680
            E      ++  ++  R
Sbjct: 442 AEPDGIRRQDDFSSRRR 458

Length = 460

>gnl|CDD|223914 COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

 Score = 43.5 bits (102), Expect = 4e-04
 Identities = 37/153 (24%), Positives = 53/153 (34%), Gaps = 13/153 (8%)

Query: 545 EKEREKARQAVERATREARERAA---AEARLKAERAAVDKANAAARER-----AERAAVQ 596
           E +R K  Q + R    A  +AA   AEA+L   +A +  A     +R     AE+AAV 
Sbjct: 84  EGDRVKKGQLLARLDPSAVLQAALDQAEAQLARAQALLAPAELGDLQREAKLAAEKAAVS 143

Query: 597 RAQAEARERAAAEARERAERAAAEARE-RANAEAREKEARERASVARTEAEALQRAER-- 653
           +A+ +A +     A    E A A     + N E     A     +        Q      
Sbjct: 144 QAELDAAQALLRAAEALVEAAQAALASAKLNLEYTRITAPISGVIGARLVRVGQLVSAGQ 203

Query: 654 --AAVQRAASEARERAAAEARERAAAAARANQN 684
             A +      A     A   ER   A +  Q 
Sbjct: 204 ALATIADLDPAAALWVLAAVLERDLLAVKVGQK 236

Length = 372

>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 44.0 bits (103), Expect = 4e-04
 Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 7/137 (5%)

Query: 424  WNNVNEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFK----AARS 479
            W  +    E+     +  S A  + ++ +E    AE  +   +E+  +        A  S
Sbjct: 941  WRGLRRLHEIRESLGLTHSYAPQNDSSSEEMGYGAEEDYSLPREIESKLPLDKRSIAVVS 1000

Query: 480  RESVQPDREERATQQDAQERLDREM---QQREKGEEQRRLEREREREREEKEREKKRIEK 536
            R    P   E   + + ++R+ +E    Q+ ++  E  +  +E E  ++EKERE++  + 
Sbjct: 1001 RRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKT 1060

Query: 537  EKERAREIEKEREKARQ 553
              +  +E+ K+R K ++
Sbjct: 1061 IHDNYKEMAKKRLKKKR 1077

Length = 1077

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 44.0 bits (104), Expect = 5e-04
 Identities = 42/202 (20%), Positives = 72/202 (35%), Gaps = 23/202 (11%)

Query: 497 QERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVE 556
           ++ L++E  +  K        R R+ E     +E K +E E    +   +  +   +A++
Sbjct: 132 RDELEKEADELWK-------PRGRKPEINVALKELKELEAEIREVQLKTRTWKDLVKALD 184

Query: 557 RATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAER 616
            A  E         +L+ E+  +++        AER A+++  A   E            
Sbjct: 185 EAEEELANLRKELRQLEKEKQRLERLRRLLPLLAERKALEQQLAALGEVIDLPPDAVERY 244

Query: 617 AAAEARERANAEAREKEARERASVARTEA-------EALQRA--------ERAAVQRAAS 661
             A A  RA A    +   ER    + E        E L +A        +R   + A  
Sbjct: 245 EEARAELRA-ARRNLELLTERLEALQAELDEISLDEELLAQAAAIEALHQQRGEYRNAEQ 303

Query: 662 EARERAAAEARERAAAAARANQ 683
           +  +R    A  R AAAA   Q
Sbjct: 304 DLPDREGEIANAREAAAALLAQ 325

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|180240 PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated

 Score = 41.3 bits (98), Expect = 5e-04
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 26/111 (23%)

Query: 538 KERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQR 597
           +ER ++I      A +A        +E   A+A+ +A+        A AR  A       
Sbjct: 34  EERQKKIADGLAAAERA-------KKELELAQAKYEAQL-------AEARAEA-----AE 74

Query: 598 AQAEARERAA---AEARERAERAAAEARERANAE-AREKE-ARE--RASVA 641
              +A++RAA    EA+  AE  AA  + +A AE  +E++ ARE  R  VA
Sbjct: 75  IIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVA 125

Length = 156

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 43.8 bits (103), Expect = 5e-04
 Identities = 41/257 (15%), Positives = 97/257 (37%), Gaps = 7/257 (2%)

Query: 410 SQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMR 469
            Q  E E+  +++      E  +    ++ E  + A     +K  + + E +    +E  
Sbjct: 258 KQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 317

Query: 470 ERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKER 529
           +    +  +  + ++ ++EE    +   + L+ + +  E+ EEQ    +E+  + EE+  
Sbjct: 318 KESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELL 377

Query: 530 EKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARER 589
            KK++E E+  +    KE E   +  E       E+ A      +E+           E 
Sbjct: 378 AKKKLESERLSSAAKLKEEELELKNEE-------EKEAKLLLELSEQEEDLLKEEKKEEL 430

Query: 590 AERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQ 649
                ++ +    + +   E  E  ++A    +++   +  E   +E   V   E   L 
Sbjct: 431 KIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELL 490

Query: 650 RAERAAVQRAASEARER 666
              +   + +  E++ R
Sbjct: 491 LLRQKLEEASQKESKAR 507

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|222790 PHA00430, PHA00430, tail fiber protein

 Score = 43.7 bits (103), Expect = 5e-04
 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 546 KEREKARQAVERATREA----RERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAE 601
            E  ++R   +RA  +A     E  A+    K  R+  D +N+ A      A    +  E
Sbjct: 166 NEANRSRNEADRARNQAERFNNESGASATNTKQWRSEADGSNSEANRFKGYADSMTSSVE 225

Query: 602 ARERAAAEARERAERAAAEAR----ERANAEAREKEARERASVARTEAE-ALQRAERA 654
           A +  A  + + A  A   A       + A A E  A   A+ A T A  A Q+A+RA
Sbjct: 226 AAKGQAESSSKEANTAGDYATKAAASASAAHASEVNAANSATAAATSANRAKQQADRA 283

Length = 568

>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200)

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 505 QQREKGEEQRRLEREREREREEKERE-KKRIEKEKERAREIEKEREKARQAVERATREAR 563
            +RE+ E +  L ++RE E E+KE E ++ + K  +  +E E +R +A +  E   +  +
Sbjct: 18  AKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEEKKLRK 77

Query: 564 ERAAAEARLKAERAAVDKANAAARERAER 592
           E+      LKAE   +        E+ E 
Sbjct: 78  EKEEEIKELKAELEELKAEIEKLEEKLEE 106

This family is found in eukaryotes. It is a coiled-coil domain of unknwon function. Length = 126

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 42.9 bits (101), Expect = 6e-04
 Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 9/145 (6%)

Query: 453 EAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQ--QDAQERLDREMQQREKG 510
           EA  +A  K + A+E   + +  A    E+        A +   +A+++ + E  ++   
Sbjct: 122 EAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAA 181

Query: 511 EEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEA 570
           E +++ E E    +   E +KK   + K++A    K++  A          A  +AAAEA
Sbjct: 182 EAKKKAEAE-AAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAK------AAAAKAAAEA 234

Query: 571 RLKAERAAVDKANAAARERAERAAV 595
           +  AE+AA  KA   A      A V
Sbjct: 235 KAAAEKAAAAKAAEKAAAAKAAAEV 259

Length = 387

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 42.9 bits (101), Expect = 6e-04
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 10/121 (8%)

Query: 568 AEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANA 627
                +A R    K  AA +E+  +  +++   EA ++ AAE     +    E  +RA A
Sbjct: 46  GAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAE-----QARQKELEQRAAA 100

Query: 628 EAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQK 687
           E   K+A +    A  +AE  Q+    A  + A+EA+ +A AEA E+ A      Q +++
Sbjct: 101 EKAAKQAEQ----AAKQAEEKQKQAEEAKAKQAAEAKAKAEAEA-EKKAKEEAKKQAEEE 155

Query: 688 N 688
            
Sbjct: 156 A 156

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 43.0 bits (101), Expect = 6e-04
 Identities = 35/141 (24%), Positives = 72/141 (51%), Gaps = 11/141 (7%)

Query: 557 RATREARERAAAEARLKAERAA--VDKANAAARERAERAAVQRAQAEARERAAAEARERA 614
           ++ + + ++   + + K E+ A  +    AA +ER ++   +R +A+ +++ A EA ++A
Sbjct: 68  QSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQA 127

Query: 615 ERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARE- 673
           +    +  E+A   A E++ +  A+ A+  AEA       A  +AA+EA+ + A EA + 
Sbjct: 128 QLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEA-------AKLKAAAEAK-KKAEEAAKA 179

Query: 674 RAAAAARANQNQQKNDNDLES 694
              A A+A     K   + E+
Sbjct: 180 AEEAKAKAEAAAAKKKAEAEA 200

Length = 387

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 43.0 bits (102), Expect = 6e-04
 Identities = 29/99 (29%), Positives = 32/99 (32%), Gaps = 8/99 (8%)

Query: 548 REKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAA 607
            E A   VE A R   +R    AR          A AA   +A  A  +RA AE   R  
Sbjct: 81  AEPAPWLVEHAKRLTAQREQLVAR--------AAAPAAPEAQAPAAPAERAAAENAARRL 132

Query: 608 AEARERAERAAAEARERANAEAREKEARERASVARTEAE 646
           A A   A R    A   A      K   ER        E
Sbjct: 133 ARAAAAAPRPRVPADAAAAVADAVKARIERIVNDTVMQE 171

Length = 484

>gnl|CDD|222790 PHA00430, PHA00430, tail fiber protein

 Score = 43.3 bits (102), Expect = 6e-04
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 552 RQAVERATREARERAAAEARLKAERA--AVDKANAAARERAERAAVQRAQAEARERAAAE 609
             AV     +   ++A  AR +A R+    D+A   A      +       +     A  
Sbjct: 146 GDAVPLGQIKTWNQSAWNARNEANRSRNEADRARNQAERFNNESGASATNTKQWRSEADG 205

Query: 610 ARERAERAAAEARERANAEAREKEARERASVARTEA-EALQRAERAAVQRAASEARERAA 668
           +   A R    A    +  +  + A+ +A  +  EA  A   A +AA   +A+ A E  A
Sbjct: 206 SNSEANRFKGYA---DSMTSSVEAAKGQAESSSKEANTAGDYATKAAASASAAHASEVNA 262

Query: 669 AEARERAAAAA 679
           A +   AA +A
Sbjct: 263 ANSATAAATSA 273

Length = 568

>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 488 EERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEK----ERARE 543
           E +    + Q ++++  + RE+ EE+  L  E ++  +E ++ K  +EK +    ER  +
Sbjct: 80  ELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAELEKYEKNDPERIEK 139

Query: 544 IEKEREKARQAVERAT 559
           +++E + A++A  R T
Sbjct: 140 LKEETKVAKEAANRWT 155

This family of proteins includes MND1 from S. cerevisiae. The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair. Length = 188

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.3 bits (102), Expect = 6e-04
 Identities = 48/180 (26%), Positives = 61/180 (33%), Gaps = 8/180 (4%)

Query: 558 ATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERA 617
           AT  A   A       A  AA     A A   A  AA   A A AR  AAA AR      
Sbjct: 375 ATAAAAPVAQPAPAAAAPAAAAP---APAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431

Query: 618 AAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAA 677
           A  A  +A+A           + A   A A     R A       A   AAA AR   AA
Sbjct: 432 ALAAARQASARGPGGAPAPAPAPAAAPAAA----ARPAAAGPRPVAAAAAAAPARAAPAA 487

Query: 678 AARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASS 737
           A     +      +L   F+  +       P    ++S+ D  +   P+ A  T   A +
Sbjct: 488 APAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPD-PATADPDDAFETLAPAPA 546

Length = 700

>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB

 Score = 43.4 bits (103), Expect = 7e-04
 Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 16/134 (11%)

Query: 504 MQQREKGEEQRRLERER---EREREEKEREKKRIEKEKERAREIEKEREKARQAVERATR 560
           M+   K EE   L+R     E ERE  ++EK   E  KER  ++EKE  +          
Sbjct: 398 MEIDSKPEELDELDRRIIQLEIEREALKKEKD--EASKERLEDLEKELAELE-------- 447

Query: 561 EARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAE 620
              E A  E + KAE+AA+       +E  E+  ++  QAE     A  A  +  +    
Sbjct: 448 --EEYADLEEQWKAEKAAIQGI-QQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPEL 504

Query: 621 ARERANAEAREKEA 634
            +    AEA+  E 
Sbjct: 505 EKRLQAAEAKLGEE 518

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins [Protein fate, Protein folding and stabilization]. Length = 852

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 43.2 bits (102), Expect = 7e-04
 Identities = 48/278 (17%), Positives = 80/278 (28%), Gaps = 24/278 (8%)

Query: 253 MPSVATDSSRSAGRATSPPSYMSATDSLRSAGRATSPPSYMSATDSLRSAGRATSPPSYT 312
            P+     +  A  A S         S     RA S P       +  +A     P   +
Sbjct: 152 PPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSS 211

Query: 313 SASPSETNSQVNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAPPPSRPPP-PRPTRVSK 371
             S S ++        + D   ++     +         P +  P  RP P   PTR+ +
Sbjct: 212 PISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWE 271

Query: 372 LETGNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQIDELEDFAMSRSWNNVNEYG 431
               N             S +   +  S+    RS + S        A S    + +   
Sbjct: 272 ASGWNGP-----------SSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSS--- 317

Query: 432 EVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERA 491
              S E   SS +++S ++   A+    +  R     R       +  R+  +P R   +
Sbjct: 318 SSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSS 377

Query: 492 TQQDAQERLDREMQQREKGEEQRRLEREREREREEKER 529
               A          R      R     R R R+   R
Sbjct: 378 PAASA---------GRPTRRRARAAVAGRARRRDATGR 406

Length = 1352

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 42.7 bits (101), Expect = 7e-04
 Identities = 53/310 (17%), Positives = 107/310 (34%), Gaps = 52/310 (16%)

Query: 323 VNTTPKSEDLFDSAEDVWLTVSEIPLFTQPTSAPPPSRPPPPRPTRVSKLETGNARKKAN 382
               P  E+L D  E+   T+ + P  +  +S    S+ P   P +V         ++  
Sbjct: 37  TEYVPYGEELVDYLEEEDPTLRD-PQISVVSSVTKLSKGPKDEPKQVKIPRQSGLSEEVA 95

Query: 383 EYSSFSNSPQCTHSPKSTRAGTRSSAASQIDELEDFAMSRSWNNVNEYGEVPSPEDVESS 442
           E      +       K+T     ++    I EL +         + E    P  +++ S 
Sbjct: 96  E------AEA-----KATSVAAEATTPKSIQELVEALEELLEELLKETASDPVVQELVSI 144

Query: 443 I--AAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERL 500
                 S        D  E+    AKE             E  Q  ++    + + +E L
Sbjct: 145 FNDLIDSIKE-DNLKDDLESLIASAKE-------------ELDQLSKKLAELKAEEEEEL 190

Query: 501 DREMQQR--EKGEEQRRLEREREREREEKEREKKRIEKEKERAR-------EIEKEREKA 551
           +R ++++  E   +       R   +E    ++ R+E E+E+         ++ +E E+ 
Sbjct: 191 ERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQ 250

Query: 552 RQAVERATREARERAAAE----------ARLKAERAA----VDKANAAARERAERAAVQR 597
            +A E+  +      A E           +++ ER      + + N+  +   E+A   R
Sbjct: 251 AEAHEQKLKNELALQAIELQREFNKEIKEKVEEERNGRLAKLAELNSRLKG-LEKALDSR 309

Query: 598 AQAEARERAA 607
           ++AE      
Sbjct: 310 SEAEDENHKV 319

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.1 bits (102), Expect = 8e-04
 Identities = 43/176 (24%), Positives = 68/176 (38%), Gaps = 17/176 (9%)

Query: 534 IEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERA 593
           I K KER +E E++ E+ R+ ++R      E    E +LK+     +KA      +AE  
Sbjct: 167 ISKYKERRKETERKLERTRENLDRLEDILNEL---ERQLKSLERQAEKAERYKELKAELR 223

Query: 594 AVQRAQAEARERAAAEARERAERAAAEA---RERANAEAREKEAR-ERASVARTEAEALQ 649
            ++ A    R     E  E  +    EA    E   AE +E E + E   +  +E E   
Sbjct: 224 ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI 283

Query: 650 RAERAAVQRAASE----------ARERAAAEARERAAAAARANQNQQKNDNDLESF 695
              +  +   A+E           RER A   R+     A+  + + K D   E  
Sbjct: 284 EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL 339

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|180941 PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 9/105 (8%)

Query: 516 LEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAA-----EA 570
           LE  RE   +  +  ++R+ +  +   E +++  +A+Q  ER   +A+ RA A     E 
Sbjct: 48  LEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEK 107

Query: 571 RLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAE 615
           +   + A + K  AAA   AE+    R  A+ R  AA  A  +AE
Sbjct: 108 QAIEDMARL-KQTAAADLSAEQE---RVIAQLRREAAELAIAKAE 148

Length = 174

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 42.2 bits (98), Expect = 8e-04
 Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 8/185 (4%)

Query: 502 REMQQREKG---EEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERA 558
           RE+  + KG     +R L     + + EK++E++  E+   +  + E+ R KAR+   R 
Sbjct: 121 RELYVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQLAAKRLKDEQHRHKARKQELRK 180

Query: 559 TREARER-----AAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARER 613
             + RER     AAA A  K + AA   A  + ++ A+ AA  +A A   + AA  A+  
Sbjct: 181 REKDRERARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAA 240

Query: 614 AERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARE 673
           A  A A A     A    K A   A  A   A+A     +AA   A + A    AA A  
Sbjct: 241 AAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPA 300

Query: 674 RAAAA 678
           +AAAA
Sbjct: 301 KAAAA 305

Length = 357

>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal region

 Score = 41.8 bits (98), Expect = 9e-04
 Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 5/173 (2%)

Query: 475 KAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRI 534
           K   + E   P  E     ++  +   R+ +Q+ + E + +L+   E+    K+ E    
Sbjct: 68  KEKSTSEPTVPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPG 127

Query: 535 EKEK-ERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERA 593
           ++ + +  + +  E    RQ    A +   E    E     E  A ++     +E+A   
Sbjct: 128 KEPQLDEDKFLLAEDSDDRQETLEAGKVHEE---TEDSYHVEETASEQYKQDMKEKASEQ 184

Query: 594 AVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAE 646
             + ++ E  E+A     E  +    +  E  N     K  +E  +    E +
Sbjct: 185 ENEDSK-EPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPVEEQ 236

This family includes the N-terminal regions of the junctin, junctate and aspartyl beta-hydroxylase proteins. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin. Aspartyl beta-hydroxylase catalyzes the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins. Length = 240

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 42.7 bits (101), Expect = 0.001
 Identities = 59/258 (22%), Positives = 91/258 (35%), Gaps = 31/258 (12%)

Query: 398 KSTRAGTRSSAASQIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMD- 456
           +  RA     A  +I+ LE+        ++ E          E    A         ++ 
Sbjct: 497 RLERAEDLVEAEDRIERLEERR-----EDLEELIAERRETIEEKRERAEELRERAAELEA 551

Query: 457 RAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDR-EMQQREKGEEQRR 515
            AE K   A E  E     A  +RE V     + A  ++  E L+R         + +  
Sbjct: 552 EAEEKREAAAEAEEE----AEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDE 607

Query: 516 LEREREREREEKEREKKRIEK---EKERAREIEKE------------REKARQAVERATR 560
           +ER RE+     E   +R E+   ++ER RE+E E            +E+A + +E+   
Sbjct: 608 IERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEE 667

Query: 561 EARERAAAEARLKAERAAVDKANAAARE-RAERAAVQRAQAEARERAAAEARERAERAAA 619
           +  E       L+AE  AV+       E R  R A+        E   A   E  E  + 
Sbjct: 668 KLDELREERDDLQAEIGAVENELEELEELRERREAL----ENRVEALEALYDEAEELESM 723

Query: 620 EARERANAEAREKEARER 637
               RA    R  E  ER
Sbjct: 724 YGDLRAELRQRNVETLER 741

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.7 bits (101), Expect = 0.001
 Identities = 31/177 (17%), Positives = 55/177 (31%), Gaps = 1/177 (0%)

Query: 513 QRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARL 572
            R    E +R RE  E  K+ +   +   R IE   ++  Q +  A+R+  E      +L
Sbjct: 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728

Query: 573 KAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREK 632
           + E   + K      E    +  Q  +    E    EAR           E A  +   +
Sbjct: 729 EQEEEKL-KERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEAR 787

Query: 633 EARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKND 689
            +  R    + E   L+        R     ++       +           +Q+ D
Sbjct: 788 LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRID 844

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 42.1 bits (100), Expect = 0.001
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 604 ERAAAEARERAERAAAEARERANAEAREK--EARERASVARTEAEA--------LQRAER 653
           E    EA E A+R   EA++ A A  +E   EA+E     R E E         LQ+ E+
Sbjct: 30  EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEK 89

Query: 654 AAVQRAASEARERAAAEARERAAAAARANQNQQKND 689
             +Q+  +  R+    E RE           Q++ +
Sbjct: 90  RLLQKEENLDRKLELLEKREEELEKKEKELEQKQQE 125

Length = 520

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 33/184 (17%), Positives = 66/184 (35%), Gaps = 9/184 (4%)

Query: 517 EREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATRE----ARERAAAEARL 572
           +++ ++ ++E    +K+I +++++  ++EK+ +     +     +    A +      ++
Sbjct: 37  DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQI 96

Query: 573 KAERAAVDKANAAARERAERAAVQ--RAQAEARERAAAEARERAERAAAEARERANAEAR 630
               A ++      RE+  R A Q    Q   R    A      E A    R      A 
Sbjct: 97  ADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPAL-LVSPEDAQRSVRLAIYYGAL 155

Query: 631 EKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDN 690
                ER   A         A RA +  A         +E R + A  A+  + ++K   
Sbjct: 156 NPARAERID-ALKATLKQLAAVRAEIA-AEQAELTTLLSEQRAQQAKLAQLLEERKKTLA 213

Query: 691 DLES 694
            L S
Sbjct: 214 QLNS 217

Length = 420

>gnl|CDD|235903 PRK06991, PRK06991, ferredoxin; Provisional

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 6/114 (5%)

Query: 522 REREEKEREKKRIEKEKERAREIEKEREKARQA-VERATREARERAAAEARLKAERAAVD 580
           R R +  + + R E+E   AR   +    A  A  E +   A     AEA+   +RA + 
Sbjct: 156 RARHDARQARLRREREAAEARAAARAAASAAAAAAEASAAAAPAADDAEAK---KRAIIA 212

Query: 581 KANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEA 634
            A   AR++ E  A Q A  +  E  +A    +A+  AAEAR +  AE R+   
Sbjct: 213 AALERARKKKEELAAQGAGPKNTEGVSAAV--QAQIDAAEARRKRLAEQRDAPD 264

Length = 270

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 6/138 (4%)

Query: 559 TREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQ--AEARERAAAEARER-AE 615
           T E +E  A +     E+    KA      R     +       E     A   + R AE
Sbjct: 280 TDEFKEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAE 339

Query: 616 RAAAEARERANAEAR---EKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEAR 672
           +  A+AR++  A+ R   E+E    A   R  A A  RA RAAV+       + +  E  
Sbjct: 340 KNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDT 399

Query: 673 ERAAAAARANQNQQKNDN 690
                 ++ +  Q +   
Sbjct: 400 PSENEESKGSPPQVEATT 417

Length = 429

>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 494 QDAQERLDREMQQREKG-EEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKAR 552
           +D +  L +  Q   +    Q++LER+ E  +   E+ +++ E   +   E     + AR
Sbjct: 34  RDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNE-----DLAR 88

Query: 553 QAVERATREARERAAAEARLKAERAAVDKANAAARERAE--------------RAAVQRA 598
           +A+E          A EA L+     V+K         +              R A  +A
Sbjct: 89  EALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKA 148

Query: 599 QAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQR 658
           Q +        +   A  A     E+      E+EAR  A+    E       +  A   
Sbjct: 149 QEKVNRSLGGGSSSSAMAAFERMEEKIE----EREARAEAAAELAEGSGDDLDKEFAQAG 204

Query: 659 AASEARERAAAE 670
           A S    R AA 
Sbjct: 205 AQSAVDSRLAAL 216

Length = 225

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 41.9 bits (99), Expect = 0.001
 Identities = 35/124 (28%), Positives = 40/124 (32%), Gaps = 15/124 (12%)

Query: 557 RATREARERAAAEARLKAERAAVDKANAAAR--ERAERAAVQRAQAEARERAAAEARERA 614
            A   A +   A A     R A   A  A    E A+R   QR Q  AR  A A    +A
Sbjct: 56  AAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQA 115

Query: 615 ERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARER 674
               A   ERA AE   +            A A   A R  V   A+ A   A     ER
Sbjct: 116 ---PAAPAERAAAENAARRL----------ARAAAAAPRPRVPADAAAAVADAVKARIER 162

Query: 675 AAAA 678
               
Sbjct: 163 IVND 166

Length = 484

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 41.9 bits (99), Expect = 0.001
 Identities = 29/121 (23%), Positives = 36/121 (29%), Gaps = 5/121 (4%)

Query: 550 KARQAVERATREARERAAAEARLKAERAA-----VDKANAAARERAERAAVQRAQAEARE 604
            A  A   A        AA +R  A  A      V+ A     +R +  A   A A    
Sbjct: 54  PAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEA 113

Query: 605 RAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEAR 664
           +A A   ERA    A  R    A A  +      + A        R ER        E R
Sbjct: 114 QAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARIERIVNDTVMQELR 173

Query: 665 E 665
            
Sbjct: 174 S 174

Length = 484

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 22/70 (31%), Positives = 42/70 (60%)

Query: 487 REERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEK 546
            ++RA  ++ Q R  +   + E+ EE+++LE +RE ER+E+E  ++  EK+KE     E+
Sbjct: 5   AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKER 64

Query: 547 EREKARQAVE 556
           E +  ++  E
Sbjct: 65  EEQARKEQEE 74

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 31/108 (28%), Positives = 39/108 (36%), Gaps = 11/108 (10%)

Query: 511 EEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEA 570
           E+ RR     E E +  ERE        ER  E+  E                E AA EA
Sbjct: 422 EDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEA----------ELAALEA 471

Query: 571 RLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAA 618
           R + E+  V+    A R   E  A   A  +A  RA     E A  +A
Sbjct: 472 RWQQEKELVEAIL-ALRAELEADADAPADDDAALRAQLAELEAALASA 518

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 852

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.7 bits (101), Expect = 0.001
 Identities = 35/142 (24%), Positives = 46/142 (32%), Gaps = 6/142 (4%)

Query: 570 ARLKAERAAVDKANAAAR-ERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAE 628
           AR+    A+ D+    AR ER ER       A A   AA  A   A  AAA A   A   
Sbjct: 360 ARMLLPSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAA-AAPAAAPAPAAAAPA 418

Query: 629 AREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKN 688
           A    A   A  A  +         A    A +     A +     A +A  A       
Sbjct: 419 A----AAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAP 474

Query: 689 DNDLESFFSMSSRPSSAPRPRA 710
           +       +  + P+ A  P A
Sbjct: 475 EPTAAPAPAPPAAPAPAAAPAA 496

Length = 824

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 39/183 (21%), Positives = 56/183 (30%), Gaps = 15/183 (8%)

Query: 568 AEARLKAERAAVDKANAAARERAERAAVQRAQAE-----ARERAAAEARERAERAAAEAR 622
           A   L+     VD+A    RE AE AA   A A             +  + AE   AE  
Sbjct: 281 APGALRGSEYVVDEA--LEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVA 338

Query: 623 ERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARE-RAAAEARERAAAAARA 681
           E    E   +   + A        A++    A ++R        +A A  +  A AA+ A
Sbjct: 339 E-VTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAA 397

Query: 682 NQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQS-KGGPEPARRTSVGASSNMR 740
            +        L S     + P   P   A   D     +    GP        G      
Sbjct: 398 PEEPA----ALASEAHDETEP-EVPEKAAPIPDPAKPDELAVAGPGDDPAEPDGIRRQDD 452

Query: 741 KAS 743
            +S
Sbjct: 453 FSS 455

Length = 460

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 42.2 bits (98), Expect = 0.001
 Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 7/169 (4%)

Query: 514 RRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLK 573
           +RL+ E+ R +  K+  +KR EK++ERAR     RE A  A     + A ++AAA +  K
Sbjct: 162 KRLKDEQHRHKARKQELRKR-EKDRERAR-----REDAAAAAAAKQKAAAKKAAAPSGKK 215

Query: 574 AERAAVDKANAAARERAERAAVQRAQAEARERAA-AEARERAERAAAEARERANAEAREK 632
           + +AA     AAA  +A     + A A A+  AA A+A     +AAA   + A   A+  
Sbjct: 216 SAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAA 275

Query: 633 EARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARA 681
               +A+    +A A      AA  +AA+   + AAA A+  A  A  A
Sbjct: 276 APPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAA 324

Length = 357

>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase

 Score = 42.9 bits (101), Expect = 0.001
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 7/62 (11%)

Query: 508 EKGEEQRRL---EREREREREEKER-EKKRIEKEKERA---REIEKEREKARQAVERATR 560
           EK  E  +L   E ERER+ EE+ R E+++   E +RA    E+EK REK +  +++A+R
Sbjct: 253 EKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQNLLKKASR 312

Query: 561 EA 562
            A
Sbjct: 313 SA 314

Length = 1036

>gnl|CDD|218184 pfam04632, FUSC, Fusaric acid resistance protein family

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 35/140 (25%), Positives = 39/140 (27%), Gaps = 14/140 (10%)

Query: 548 REKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEA-RERA 606
               R  +    R+A   AA    L     A      AARE   R A      EA R  A
Sbjct: 155 GPALRARLRAWLRDAARLAADA--LAGAGGA------AAREARLRLAADILALEALRSHA 206

Query: 607 AAEARE--RAERAAAEARER---ANAEAREKEARERASVARTEAEALQRAERAAVQRAAS 661
           A E+       RA      R     A          A  A   A AL           A+
Sbjct: 207 AFESPRGRARNRALRRLNARMLALLARLSALARLLAALRAAGAAAALAALLDELAAALAA 266

Query: 662 EARERAAAEARERAAAAARA 681
                A A  R R AA    
Sbjct: 267 AGLPAAVAALRARLAALRPE 286

This family includes a conserved region found in two proteins associated with fusaric acid resistance,from Burkholderia cepacia and Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins. Length = 649

>gnl|CDD|119241 pfam10721, DUF2514, Protein of unknown function (DUF2514)

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 7/93 (7%)

Query: 589 RAERAAVQRAQAEARERAAAEARERAERAA--AEARERANAEAREKEARERASVARTEAE 646
             E A  Q+  A+ R+ A A A   AE AA   E R +A      K+A+E A+ AR +A 
Sbjct: 24  SWEDAGWQQKWAD-RDAADALAEVIAETAARAEEQRRQAAQNEAAKDAQEEAAAARADAA 82

Query: 647 ALQRAERAAVQRAASEARERAAAEARERAAAAA 679
                  AA  R   EA + AAA++   +  AA
Sbjct: 83  DA----DAAAGRLRQEADKLAAAKSCPTSDTAA 111

This family is conserved in bacteria and some viruses. The function is not known. Length = 162

>gnl|CDD|119241 pfam10721, DUF2514, Protein of unknown function (DUF2514)

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 36/106 (33%), Positives = 44/106 (41%), Gaps = 11/106 (10%)

Query: 566 AAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERA 625
            A   +  A+R A D       E A RA  QR QA     A  EA + A+  AA AR  A
Sbjct: 27  DAGWQQKWADRDAADALAEVIAETAARAEEQRRQA-----AQNEAAKDAQEEAAAARADA 81

Query: 626 NAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEA 671
                   A   A   R EA+ L  A+       A+ AR +AAA A
Sbjct: 82  AD------ADAAAGRLRQEADKLAAAKSCPTSDTAAAARGKAAARA 121

This family is conserved in bacteria and some viruses. The function is not known. Length = 162

>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional

 Score = 42.6 bits (100), Expect = 0.001
 Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 3/62 (4%)

Query: 516 LERERER-EREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKA 574
           L R RE+ ERE++ER K+R + + ER R+ ++E  K R+A+E A R  R   A EA++KA
Sbjct: 5   LRRAREKLEREQRER-KQRAKLKLERERKAKEEAAKQREAIEAAQRS-RRLDAIEAQIKA 62

Query: 575 ER 576
           ++
Sbjct: 63  DQ 64

Length = 567

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 1/122 (0%)

Query: 469 RERESFKAARSRESVQPDREERATQQDAQERLDR-EMQQREKGEEQRRLEREREREREEK 527
              +S +  +  E      E +    + QE L+  E +  E   E   L+ + +  RE  
Sbjct: 64  APVQSVRPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELL 123

Query: 528 EREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAAR 587
           +  ++R+E  +E  +E+ KE  + RQ +     E RE                +   +  
Sbjct: 124 KSLEERLESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQSLL 183

Query: 588 ER 589
           E+
Sbjct: 184 EQ 185

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 546 KEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARER 605
           KE ++ +   ++      ++AA +A L+AE+   +    A  E+    A   A  EA   
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAA 166

Query: 606 AAAEARERAERAAAEARERANAE 628
              EA    E  A EA    +AE
Sbjct: 167 EEEEA---EEAPAEEAPAEESAE 186

Length = 186

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 47/289 (16%), Positives = 94/289 (32%), Gaps = 63/289 (21%)

Query: 466 KEMRERESFKAARSRESVQPDREERATQQ-DAQERLDR-EMQQREKGEEQRRLERERERE 523
            E+   E        +      E+ A +    +  L+  +       ++ R    +   E
Sbjct: 209 SEIEALE-----AELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEE 263

Query: 524 REEKEREKKRIEKEKERARE-------------------------IEKEREKARQAVERA 558
           RE+ ER+ K IE  ++  R                          ++KE +  +  + + 
Sbjct: 264 REQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQE 323

Query: 559 TREARER------------AAAEARLKAERAAVDKAN-----------AAARERAERAA- 594
             E R++            A     + AE A +DK              +   + E    
Sbjct: 324 ELEERDKELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQ 383

Query: 595 -VQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQR-AE 652
            V+R   +A+ +   E RE  E  A   ++ +   + E+ A+    +   + E  +  AE
Sbjct: 384 QVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAE 443

Query: 653 RAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSR 701
              + R     +     EA E           Q+ N  +LE   +++ +
Sbjct: 444 IEELLRQLETLK-----EAIEALRKTLDEKTKQKINAFELERAITIADK 487

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

>gnl|CDD|112890 pfam04094, DUF390, Protein of unknown function (DUF390)

 Score = 42.5 bits (99), Expect = 0.001
 Identities = 58/194 (29%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 511 EEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARE------ 564
           E +R +E   E  R+   R    +E  K+   EI KE E+ R+A   AT    E      
Sbjct: 425 EGRRSVEAMVEAGRKAHRRHTSELEARKKDLAEIAKEVEEEREAALIATTVLNEAQDDLR 484

Query: 565 ------RAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEA--------RERAAAEA 610
                  A  E +L A +  +D A A  +  AE  A  R + EA         ERA A+ 
Sbjct: 485 LQYGSRAAELEKKLDAAQGVLDAAAAREQRAAENEAASRQREEALEARAMALEERACAKE 544

Query: 611 RERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAE 670
           R+ A+R AA A   A   A E    E     R   +AL   ER A++ A + A++ A + 
Sbjct: 545 RDLADREAAVAIREATLAAHEAACAEEEFALRLREDALTERER-ALEEAEAAAQQLADSL 603

Query: 671 ARERAAAAARANQN 684
               AA   +A +N
Sbjct: 604 FLREAAQEEQARRN 617

This is a family of long proteins currently only found in the rice genome. They have no known function. However they may be some kind of transposable element. Length = 843

>gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0)

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 22/90 (24%), Positives = 39/90 (43%)

Query: 487 REERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEK 546
           +E     + A   L    QQ  +   +        ++  +K +E+   E +K+  R +E 
Sbjct: 40  KEAEERLKQAAALLAEAEQQLAQARAEASEIINNAKKEAQKLKEEILAEAQKDAERLLES 99

Query: 547 EREKARQAVERATREARERAAAEARLKAER 576
            R +  Q  E+A  E R++ AA A   AE+
Sbjct: 100 ARAEIEQEKEQALAELRQQVAALAVQIAEK 129

Part of the CF(0) (base unit) of the ATP synthase. The base unit is thought to translocate protons through membrane (inner membrane in mitochondria, thylakoid membrane in plants, cytoplasmic membrane in bacteria). The B subunits are thought to interact with the stalk of the CF(1) subunits. This domain should not be confused with the ab CF(1) proteins (in the head of the ATP synthase) which are found in pfam00006. Length = 132

>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 554 AVERATR--EARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEAR 611
           A+E  T+  EA  R  AE   +  R  +++     + +AE    +  + +A E AA E+ 
Sbjct: 656 AIEITTKSQEAAARHQAELLEQEARGRLERQKMHDKAKAEEQRTKLLELQA-ESAAVESS 714

Query: 612 ERAERAAAEARERAN---AEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAA 668
            ++ RA A A   A    AEA  ++A  RA   R EAEA     R   +      + +  
Sbjct: 715 GQS-RAEALAEAEARLIEAEAEVEQAELRAKALRIEAEAELEKLRKRQELELEYEQAQNE 773

Query: 669 AE-ARERAAAAARANQNQQ 686
            E A+ +  A   A + ++
Sbjct: 774 LEIAKAKELADIEATKFER 792

Length = 850

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 41.7 bits (98), Expect = 0.002
 Identities = 47/294 (15%), Positives = 82/294 (27%), Gaps = 37/294 (12%)

Query: 437 EDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKA---ARSRESVQPDREERATQ 493
           E+    +        KE     E   +  + ++E +   A   A   E  +   E     
Sbjct: 360 EERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKEL 419

Query: 494 QDAQERLDREMQQREKGEEQRRLEREREREREEKEREKK---------RIEKEKERAREI 544
           ++ +  L+   ++ +K EEQ      +E    E     +           E EKE     
Sbjct: 420 EELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELY 479

Query: 545 EKEREKARQAVERATREARERAAAEARLKAERA------------------------AVD 580
           E E E+  + + R   EA  R   E   K  R                          ++
Sbjct: 480 ELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLE 539

Query: 581 KANAAARERAERAAVQRAQAEARERAAAEAR-ERAERAAAEARERANAEAREKEARERAS 639
                  E  E+  +Q+ + E R+        +         R R       +E  +   
Sbjct: 540 NLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELK 599

Query: 640 VARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLE 693
               E E         +Q       E    EA E   +       Q + +  L+
Sbjct: 600 KKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQ 653

Length = 908

>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 9/132 (6%)

Query: 588 ERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKE------ARERASVA 641
           E  ++ A +RA+ EAR+R  A+      +   E RE+  A  +  +       R  A+ A
Sbjct: 8   EDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAA 67

Query: 642 RTEAEALQRAERAAVQRAASE---ARERAAAEARERAAAAARANQNQQKNDNDLESFFSM 698
           + +A AL + +R   +    E     +  AA A +  AAA    + +   +   E   + 
Sbjct: 68  KAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAA 127

Query: 699 SSRPSSAPRPRA 710
            ++ ++A + +A
Sbjct: 128 KAKAAAAAKAKA 139

Length = 430

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 41.7 bits (98), Expect = 0.002
 Identities = 43/208 (20%), Positives = 76/208 (36%), Gaps = 27/208 (12%)

Query: 498 ERLDREMQQREKGEEQRRLERER-EREREEKER---------EKKRIEKE---------- 537
           + L + + + E+     R E  + E+E++  ER         E+K +E++          
Sbjct: 177 KDLVKALDEAEEELANLRKELRQLEKEKQRLERLRRLLPLLAERKALEQQLAALGEVIDL 236

Query: 538 ----KERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERA 593
                ER  E   E   AR+ +E  T       A    +  +   + +A A      +R 
Sbjct: 237 PPDAVERYEEARAELRAARRNLELLTERLEALQAELDEISLDEELLAQAAAIEALHQQRG 296

Query: 594 AVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAER 653
             + A+ +  +R    A  R   AA  A+   +A+    E+   +  A+     L   +R
Sbjct: 297 EYRNAEQDLPDREGEIANAREAAAALLAQIGPDADEEAVESLRPSLAAKETVTEL--EKR 354

Query: 654 AAVQRAASEARERAAAEARERAAAAARA 681
                 A ++   A  E RER     RA
Sbjct: 355 KEALDQALKSARDALEE-RERELKQVRA 381

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 53/328 (16%), Positives = 107/328 (32%), Gaps = 33/328 (10%)

Query: 503 EMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREA 562
           E         + RL  +         +  + I+K      +++++ E+      R     
Sbjct: 210 EHLADGTVPPKSRLNPQDVEHWIADIQALRAIQKVAPEIEKLQEDFEQLLSLELRLQHLH 269

Query: 563 RERAAAEARLKAERAAVDKANAAARE--RAERAAVQRAQAEARERAAA------EARERA 614
            E  A E RL  E+    +A    R+  R     ++ A+ E  +  +A        R   
Sbjct: 270 GELVADEERLAEEQEERQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSEL 329

Query: 615 ERAAAEAR--ERANAEAREKEARERASVARTEAEALQRAERAAV--QRAASEARERAAAE 670
           E    +    E A+ E  + +  ++    R+E E ++    A     +      ER   +
Sbjct: 330 ELLEDQKGAFEDADIEQLQADL-DQLPSIRSELEEVEARLDALTGKHQDVQRKYERLKQK 388

Query: 671 ARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARR 730
            +E+       N  +     +               R +A   + L   Q+       + 
Sbjct: 389 IKEQLERDLEKNNERLAAIRE------------EKDRQKAAIEEDL---QALESQLRQQL 433

Query: 731 TSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRRARLERHQRTQER 790
            +     N  +      +   L     +A ++  E + +E   E   +A+ E+ Q     
Sbjct: 434 EAGKLEFNEEEYELELRLG-RLKQRLDSATATPEELEQLEINDEALEKAQEEQEQAEANV 492

Query: 791 AAKALAEKNERDLQAQRDQA-ERHRIAE 817
                 +   R L+ +RD+A E  + AE
Sbjct: 493 EQ---LQSELRQLRKRRDEALEALQRAE 517

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 12/154 (7%)

Query: 530 EKKRIEKEKERAREIEKEREKARQAVERATREARE------RAAAEARLKAERAAVDKAN 583
           +KK +E  +E   + EK     R   +   RE++E      +   E   K   A  DKA 
Sbjct: 179 DKKVVEALRE---DNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDA--DKAQ 233

Query: 584 AAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVART 643
             A    + A  QR +   +++ A    + A+ ++ +  ++  AE +++E  +     + 
Sbjct: 234 QKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQV-AENQKREIEKAQIEIKK 292

Query: 644 EAEALQRAERAAVQRAASEARERAAAEARERAAA 677
             E   +A+         E++        +   A
Sbjct: 293 NDEEALKAKDHKAFDLKQESKASEKEAEDKELEA 326

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|116627 pfam08017, Fibrinogen_BP, Fibrinogen binding protein

 Score = 41.0 bits (95), Expect = 0.002
 Identities = 38/195 (19%), Positives = 82/195 (42%), Gaps = 13/195 (6%)

Query: 492 TQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKA 551
           +Q +  ER  R+ + R +G    R +R+ E   +    E+++ + E      + + R+  
Sbjct: 26  SQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQ-- 83

Query: 552 RQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEAR 611
           R A  R+     ER   +   K++   +++       +++   ++R Q +A  R+     
Sbjct: 84  RDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVL 143

Query: 612 ERAERAAAEARERANAEAREKEA-----------RERASVARTEAEALQRAERAAVQRAA 660
           ER +R A    +    E R+++A           R+R    +++   L+R +R    ++ 
Sbjct: 144 ERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQ 203

Query: 661 SEARERAAAEARERA 675
               ER   +A  R+
Sbjct: 204 GNVLERRQRDAENRS 218

Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation. Length = 393

>gnl|CDD|224482 COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 500 LDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERAT 559
             ++ Q  +KG+   R++    R     E+ +  +   + + R +  +   A+  + +A 
Sbjct: 68  NVKDNQLVKKGDVLFRIDPRDYRAA--LEQAEAALAAAEAQLRNLRAQLASAQALIAQAE 125

Query: 560 REARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAA 619
            +  ++A  E      RA + +    +RE  +RA      AEA   AAA+A ++   A  
Sbjct: 126 AQDLDQAQNELER---RAELAQRGVVSREELDRARAALQAAEA-ALAAAQAAQKQNLALL 181

Query: 620 EAR------ERANAEAREKEAR 635
           E+       + A+AEA   +A+
Sbjct: 182 ESEVSGAQAQVASAEAALDQAK 203

Length = 352

>gnl|CDD|224482 COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 610 ARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAA--------S 661
           A E+AE A A A E      R + A  +A +A+ EA+ L +A+    +RA          
Sbjct: 92  ALEQAEAALAAA-EAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSR 150

Query: 662 EARERAAAEARERAAAAARANQNQQKNDNDLES 694
           E  +RA A  +   AA A A   Q++N   LES
Sbjct: 151 EELDRARAALQAAEAALAAAQAAQKQNLALLES 183

Length = 352

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 35/158 (22%), Positives = 52/158 (32%), Gaps = 31/158 (19%)

Query: 486 DREERATQQDAQERLDREMQQREKGEEQRRLERERERE--------------REEKEREK 531
             E +     A++R     +Q+EK      L R R R                E K+   
Sbjct: 280 TDEFKEHH--AEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRT 337

Query: 532 KRIEKEKERAREIEKEREKARQAVERATREA-RERAAAE----ARLKAERAAVDKANAAA 586
               + K R +EI ++R  A        RE  RE         AR +A RAAV       
Sbjct: 338 AEKNEAKARKKEIAQKRRAAE-------REINREARQERAAAMARARARRAAVKAKKKGL 390

Query: 587 RERAERAAVQRAQAEARERAAAEARERAERAAAEARER 624
            + +     +   +E  E   +  +  A   A   RE 
Sbjct: 391 IDASPN---EDTPSENEESKGSPPQVEATTTAEPNREP 425

Length = 429

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 42.3 bits (99), Expect = 0.002
 Identities = 36/209 (17%), Positives = 72/209 (34%), Gaps = 13/209 (6%)

Query: 452 KEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGE 511
             A    EA+ +  +E++  E     +  E  +   ++   +++  E        +EK  
Sbjct: 723 LLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSEL-----SLKEKEL 777

Query: 512 EQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEAR 571
            +   + E+ +  EEKE + K  E+E     E  KE  +  +  +    +  +    E  
Sbjct: 778 AEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELE 837

Query: 572 LKAERA-AVDKANAAARERAER------AAVQRAQAEARERAAAEARERAERAAAEARER 624
             A       K    A E  ER            +   +E    E + + E  + E +E+
Sbjct: 838 ELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEK 897

Query: 625 -ANAEAREKEARERASVARTEAEALQRAE 652
               E  E+  ++     +      + AE
Sbjct: 898 EEKKELEEESQKDNLLEEKENEIEERIAE 926

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|226127 COG3599, DivIVA, Cell division initiation protein [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 34/161 (21%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 531 KKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERA 590
               E+  +   ++E E ++ ++ ++    EA +   ++A  +AE  A +   AA  E  
Sbjct: 36  IDDYEQLLDENEDLEDEIDELKEELK----EAADAEDSQAIQQAETEAEELKQAAEAEAD 91

Query: 591 ERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQR 650
           +      AQA+     A    +R    A  A+E  + + + +  R+R         A  +
Sbjct: 92  DILKRASAQAQRVFGKAQYKADRYLEDAKIAQELEDLKRQAQVERQRLRSDIEAQLASAK 151

Query: 651 AERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDND 691
            E       ++     AA E  ER A AA+A+ ++ +++ D
Sbjct: 152 QEDWDEILRSTVDEVEAANEEAERLADAAQADADRLRDECD 192

Length = 212

>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 12/120 (10%)

Query: 561 EARERAAAEARLKAERAAVDKANAAARERAERAAV--QRAQAEARERAAAEARER--AER 616
           +AR+   AE +   E  A  KA    ++  ++  +  Q+AQ +  E+A  E ++      
Sbjct: 166 QARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLE 225

Query: 617 AAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAA 676
           ++ +  ++  +E R  E+R R S+AR E EA  RAER        EARE A    +++ A
Sbjct: 226 SSLQKDQQQLSELRANESRLRDSIARAEREAKARAER--------EAREAARVRDKQKQA 277

Length = 428

>gnl|CDD|181646 PRK09098, PRK09098, type III secretion system protein HrpB; Validated

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 47/135 (34%), Positives = 56/135 (41%), Gaps = 16/135 (11%)

Query: 560 REARERA----AAEARLKAERAAVDKANAAARERAERAAVQ-RAQAEARERAAAEARERA 614
           REA        AA A + AER AV    AAAR RAER   + RAQAEA   AA    +R+
Sbjct: 21  REAFATVLALDAALAAVHAERDAV---LAAARARAERIVAEARAQAEAILEAARREADRS 77

Query: 615 ERAA-AEARERANAEAREKEAR---ERASVARTEAEALQRAERAAVQRAASEARERA--- 667
            R   A    +A AE   + A         AR   E L     AAV++        A   
Sbjct: 78  ARRGYAAGLRQALAEWHARGADHAFAERRAARRMRERLAEIVAAAVEQIVLGEDRAALFA 137

Query: 668 -AAEARERAAAAARA 681
            AA+  ER    A  
Sbjct: 138 RAAQTLERVVDGASY 152

Length = 233

>gnl|CDD|223914 COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

 Score = 41.6 bits (97), Expect = 0.002
 Identities = 24/156 (15%), Positives = 41/156 (26%), Gaps = 4/156 (2%)

Query: 528 EREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAAR 587
             +   + +      E +  R +A  A        RE   A  +    +A +D    AA+
Sbjct: 96  RLDPSAVLQAALDQAEAQLARAQALLAPAELGDLQREAKLAAEKAAVSQAELD----AAQ 151

Query: 588 ERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEA 647
                A      A+A   +A    E     A  +        R  +         T A+ 
Sbjct: 152 ALLRAAEALVEAAQAALASAKLNLEYTRITAPISGVIGARLVRVGQLVSAGQALATIADL 211

Query: 648 LQRAERAAVQRAASEARERAAAEARERAAAAARANQ 683
              A    +               +     AA  +Q
Sbjct: 212 DPAAALWVLAAVLERDLLAVKVGQKVTVTLAAGPDQ 247

Length = 372

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 41.5 bits (96), Expect = 0.002
 Identities = 52/173 (30%), Positives = 72/173 (41%), Gaps = 1/173 (0%)

Query: 506 QREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARER 565
           +R K E+ R   R++E  + EK+RE+ R E     A   +K   K + A     + A+  
Sbjct: 162 KRLKDEQHRHKARKQELRKREKDRERARREDAAAAAAAKQKAAAK-KAAAPSGKKSAKAA 220

Query: 566 AAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERA 625
           A A+A     +AA   A AAA      AA  +A A   + AA  A+  A  A A A    
Sbjct: 221 APAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAK 280

Query: 626 NAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAA 678
            A    K A   A  A   A+A     +AA   A + A    AA    +AA  
Sbjct: 281 AAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATP 333

Length = 357

>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 575 ERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEA 634
           E  A  K  A   E+  +   ++ +    ++AA +A   AE+   EAR  A AE +  EA
Sbjct: 96  EAQAEAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEA 155

Query: 635 RERASVARTEAEALQRAERAAVQRAASEARERAAAE 670
                 A    EA    E  A +  A EA    +AE
Sbjct: 156 -----AAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186

Length = 186

>gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0)

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 4/95 (4%)

Query: 588 ERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEARE--KEARERASVARTEA 645
           ER E+ A    +AE R + AA     AE+  A+AR  A+       KEA++       EA
Sbjct: 30  ERKEKIANNIKEAEERLKQAAALLAEAEQQLAQARAEASEIINNAKKEAQKLKEEILAEA 89

Query: 646 EA-LQRAERAAVQRAASEARERAAAEARERAAAAA 679
           +   +R   +A      E +E+A AE R++ AA A
Sbjct: 90  QKDAERLLESARAEIEQE-KEQALAELRQQVAALA 123

Part of the CF(0) (base unit) of the ATP synthase. The base unit is thought to translocate protons through membrane (inner membrane in mitochondria, thylakoid membrane in plants, cytoplasmic membrane in bacteria). The B subunits are thought to interact with the stalk of the CF(1) subunits. This domain should not be confused with the ab CF(1) proteins (in the head of the ATP synthase) which are found in pfam00006. Length = 132

>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207)

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 38/177 (21%), Positives = 81/177 (45%), Gaps = 27/177 (15%)

Query: 478 RSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKE 537
           RS + V+ +R+ +   ++       + Q++ +   + + ++ERE+EREE E  ++R+ KE
Sbjct: 74  RSLKEVKLERQAQEAYENWLSAKQAQRQKKLQKLLEEKQKQEREKEREEAE-LRQRLAKE 132

Query: 538 KERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQR 597
           K      +K ++ A+Q   +  +EA E A++                         ++  
Sbjct: 133 KYEEWCRQKAQQAAKQRTPKHKKEAAESASS-------------------------SLSG 167

Query: 598 AQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERA 654
           +    R  +  EA++R +    +  ++   + RE+E R++    + E E  Q+AE A
Sbjct: 168 SAKPERNVSQEEAKKRLQEWELKKLKQQQQK-REEERRKQRKKQQEEEERKQKAEEA 223

This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261

>gnl|CDD|225747 COG3206, GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]

 Score = 41.7 bits (98), Expect = 0.002
 Identities = 54/283 (19%), Positives = 96/283 (33%), Gaps = 47/283 (16%)

Query: 436 PEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRE-RESFK---AARSR----ESVQPDR 487
           PE V   + A+    +K+ +      F  +  + +  ES K   A RSR         D 
Sbjct: 108 PEFVGKPLIASFLRLLKDLIGPDPTIFEISYRLDDLLESLKVLRAGRSRVIELSYTSNDP 167

Query: 488 EERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRI-EKEKERAREIEK 546
           +  A   +A  +     Q   + E  RR   +   ER E+ R + +  E + E  R    
Sbjct: 168 KLAAKLANALAQAYLADQLEAQLEAFRR-ASDSLDERLEELRARLQEAEAQVEDFRAQHG 226

Query: 547 EREKARQAV----------ERATREARERAAAEARLKAERA------------AVDKANA 584
             + AR  +           +        A AEARL +                V ++  
Sbjct: 227 LTDAARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPT 286

Query: 585 AARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTE 644
               R + A V++  A+      A+     +  A EA+     +    E R+  +    E
Sbjct: 287 IQDLRQQYAQVRQQIADLSTELGAK---HPQLVALEAQLAELRQQIAAELRQILASLPNE 343

Query: 645 AEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQK 687
              L+       Q+ A+  +E A  + R      ++  + Q +
Sbjct: 344 LALLE-------QQEAALEKELAQLKGR-----LSKLPKLQVQ 374

Length = 458

>gnl|CDD|221198 pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 565 RAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARER 624
           R    A L      +  A + A      A  + AQ EA ER AA AR  AE   AE    
Sbjct: 45  REELRAALAPAAPELPDALSEALAELVAALWEAAQEEAEERLAA-ARAAAEAERAE---- 99

Query: 625 ANAEAREKEARERASVARTEAEA 647
              EA   EA   A     E EA
Sbjct: 100 --LEAELAEAAAEAEALEEELEA 120

The broad host-range plasmid RK2 is able to replicate in and be inherited in a stable manner in diverse Gram-negative bacterial species. It encodes a number of co-ordinately regulated operons including a central control korF1 operon that represses the kfrA operon. The KfrA polypeptide is a site-specific DNA-binding protein whose operator overlaps the kfrA promoter. The N-terminus, containing an helix-turn-helix motif, is essential for function. Downstream from this family is an extended coiled-coil domain containing a heptad repeat segment which is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning. Length = 120

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 52/176 (29%), Positives = 76/176 (43%), Gaps = 24/176 (13%)

Query: 506 QREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARER 565
           Q +  EEQR  E  RE+     ER    +E E E  R   ++ E+AR+  E    EA ER
Sbjct: 587 QTQVEEEQRAREDAREQLAV-AERRATALEAELEELRSALEQAERARKQAETELAEASER 645

Query: 566 AAA---------------EARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEA 610
                             E  L A ++ +D+A    +   ERA  ++AQA+A  R A E 
Sbjct: 646 VNELTAQNSSLIAQKRKLEGELAALQSDLDEAVNELKAAEERA--KKAQADA-ARLAEEL 702

Query: 611 RERAERAAAEARERANAEAREKEARERASVARTEAEALQRAE-RAAVQRAASEARE 665
           R+  E +    R R   E++ KE + R      EAEA      +  +Q+  +  RE
Sbjct: 703 RQEQEHSQHLERLRKQLESQVKELQVRLD----EAEAAALKGGKKMIQKLEARVRE 754

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|115307 pfam06637, PV-1, PV-1 protein (PLVAP)

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 26/185 (14%)

Query: 512 EQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEA- 570
           E++     + RE + +E++      +K +A  I  +++K    +  A R++    + +  
Sbjct: 194 EEQLEACGKARELQHQEQQLAEENLQKVQALCIPLDKDKFEADLLNAWRDSIIPRSLDNL 253

Query: 571 ------RLKAERAAVDKA----------NAAARERAERAAVQRAQAEARE--RAAAEARE 612
                  L  E A++ +A                R  RA ++R   E  +  R   EA E
Sbjct: 254 GYNLHHPLGPELASIRRACDHLPGIMSSKIEELARGLRADIERVARENADLQRQKLEA-E 312

Query: 613 RAERAAAEARERANAEAREKEARERASVART-----EAEALQRAERAAVQRAASEARERA 667
           +A +AA EA+ +A  EA+ +EA+ +A  AR      E +A  RAER  + +   EA++R 
Sbjct: 313 QAAQAAQEAKAKAEKEAQAREAKLQAECARQTQLALEEKAALRAERDNLAKEL-EAKKRE 371

Query: 668 AAEAR 672
           A + R
Sbjct: 372 AEQLR 376

This family consists of several PV-1 (PLVAP) proteins which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms. The function of this family is unknown. Length = 442

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 38/213 (17%), Positives = 79/213 (37%), Gaps = 28/213 (13%)

Query: 452 KEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREK-- 509
           KE     E   R   E+      +     E ++ + +E    ++  E L++E++  E   
Sbjct: 196 KEKEKELEEVLREINEISSELP-ELREELEKLEKEVKELEELKEEIEELEKELESLEGSK 254

Query: 510 -------GEEQRRLE--REREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATR 560
                   E + R+E  ++   E EEK +E K ++++ E   ++ +  E+    +    +
Sbjct: 255 RKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEK 314

Query: 561 EARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAE 620
                    +RL+ E   +        ER +    +  + E  ++   E  +R E    E
Sbjct: 315 R-------LSRLEEEINGI-------EERIKELEEKEERLEELKKKLKELEKRLEE--LE 358

Query: 621 ARERANAEAREKEARERASVARTEAEALQRAER 653
            R     EA+ K+        R      ++ E+
Sbjct: 359 ERHELYEEAKAKKEELERLKKRLTGLTPEKLEK 391

Length = 880

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 41.5 bits (98), Expect = 0.003
 Identities = 56/274 (20%), Positives = 90/274 (32%), Gaps = 60/274 (21%)

Query: 463 RHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQ---REKGEEQR----- 514
           RHA E R     +A   R  +   R + A +Q     + RE+ +    E   EQ      
Sbjct: 276 RHANE-RRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAAS 334

Query: 515 ---RLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEAR 571
               L +   R++E+ ER +  +E+ +ER  E  +  E+A +  E     A         
Sbjct: 335 DHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDE 394

Query: 572 LKAERA---------------------AVDKAN-----------------AAARERAERA 593
           LK++ A                     A+++A                     + + + A
Sbjct: 395 LKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEA 454

Query: 594 AVQRAQAEARERAAAEARERAERAAAEA--------RERANAEAREKEARERASVARTE- 644
             +    E +   A  A  + E+A            R  A   ARE   R R      E 
Sbjct: 455 TEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQ 514

Query: 645 AEALQRAERAAVQRAASEAR-ERAAAEARERAAA 677
            + L+       QR   + R ER  AE  +R   
Sbjct: 515 LQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGK 548

Length = 1486

>gnl|CDD|224455 COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 37/160 (23%), Positives = 51/160 (31%), Gaps = 24/160 (15%)

Query: 552 RQAVERATREARERAAAEARLKAERAAVDKANAAARERAE-RAAVQRAQAEARERAAAE- 609
            Q V  A     +   A A ++A RA +  A AA   +    A+  R        ++   
Sbjct: 46  NQLVNLALAANPDLRVAAAEVEAARAQLRIARAALLPQLSASASYTRQTLAGGPLSSTGT 105

Query: 610 -------------------ARERAERAAAEARERANAEAREKEARE-RASVARTEAEALQ 649
                               R RA   AAEA  +A     E       A VA    + L 
Sbjct: 106 DRNSYGYGLSLASWLLDLFGRVRANVRAAEAAAKAARAQLEAARLSLAAEVATAYFDLLA 165

Query: 650 RAERAAVQRAASEARERA--AAEARERAAAAARANQNQQK 687
             E+ A+      A E     AE R  A  A R +  Q +
Sbjct: 166 AQEQLALAEETLAAAEEQLELAEKRYDAGLATRLDVLQAE 205

Length = 457

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.5 bits (98), Expect = 0.003
 Identities = 27/133 (20%), Positives = 31/133 (23%), Gaps = 6/133 (4%)

Query: 557 RATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAER 616
           R        A A A      AA   A A A   A  AA       A  + A      A  
Sbjct: 384 RLGVAGGAGAPAAAA--PSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAP---APA 438

Query: 617 AAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAA 676
            A  +                A+ +   A A   A        A       A  A   A 
Sbjct: 439 PAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAP-EPTAAPAPAPPAAPAPAAAPAAP 497

Query: 677 AAARANQNQQKND 689
           AA  A        
Sbjct: 498 AAPAAPAGADDAA 510

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 32/133 (24%), Positives = 39/133 (29%)

Query: 551 ARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEA 610
           AR  +  A+ + R   A   RL+        A A A      AA   A A A   AA  A
Sbjct: 360 ARMLLPSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAA 419

Query: 611 RERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAE 670
                 AAA     A A A    +    + A         A  +A    A  A     A 
Sbjct: 420 AAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAA 479

Query: 671 ARERAAAAARANQ 683
                 AA     
Sbjct: 480 PAPAPPAAPAPAA 492

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.0 bits (96), Expect = 0.003
 Identities = 39/174 (22%), Positives = 49/174 (28%), Gaps = 5/174 (2%)

Query: 540 RAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQ 599
            A      +     A   A   A     A        AA  +A AAA  R   A    A 
Sbjct: 376 TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE--AL 433

Query: 600 AEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRA 659
           A AR+ +A         A A A   A A      A     VA   A A  RA  AA    
Sbjct: 434 AAARQASARGPGGAPAPAPAPAAAPAAAARP--AAAGPRPVAAAAAAAPARAAPAAAPAP 491

Query: 660 ASEARERAAAEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTS 713
           A +       E     A+ A A  +        ES    ++            +
Sbjct: 492 ADDDPP-PWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPA 544

Length = 700

>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 41.0 bits (96), Expect = 0.003
 Identities = 24/184 (13%), Positives = 70/184 (38%), Gaps = 6/184 (3%)

Query: 489 ERATQQDAQERLDREMQQREKGEEQRRLERERE----REREEKEREKKRIEKEKERAREI 544
           E+A  +  ++     +    +  E+   E+  +    +++E  + E++ I ++KE+    
Sbjct: 25  EQARYKQIEQEDQSRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLF 84

Query: 545 EKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARE 604
            ++ ++   A++    +             E   ++K      +  ++     A+   ++
Sbjct: 85  NEQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKK 144

Query: 605 RAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQ-RAERAAVQRAASEA 663
           R   +  ER  +   E +   + E   ++  E+   A  + E  +   +R +      + 
Sbjct: 145 RENNKNEER-LKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILKKL 203

Query: 664 RERA 667
           + RA
Sbjct: 204 KRRA 207

Length = 438

>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 4/106 (3%)

Query: 556 ERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAE 615
            +  REA    A E R   E    D+  A A E        + + +  +       E  +
Sbjct: 1   LKELREALAELAKELRKLTE----DEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLD 56

Query: 616 RAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAAS 661
              A+          E+E  E  + A      L+  + A  +   +
Sbjct: 57  ELEAKPAASGEGGGGEEEEEEAKAEAAEFRAYLRGGDDALAEERKA 102

This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease [Mobile and extrachromosomal element functions, Prophage functions]. Length = 384

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 40.7 bits (96), Expect = 0.003
 Identities = 18/61 (29%), Positives = 40/61 (65%), Gaps = 4/61 (6%)

Query: 490 RATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKERE 549
             T+++ +E++ +  ++ E+ EE    E++ E+++EE+E +  ++  E++R  E EKER+
Sbjct: 262 DKTREEEEEKILKAAEE-ERQEE--AQEKKEEKKKEEREAKLAKLSPEEQRKLE-EKERK 317

Query: 550 K 550
           K
Sbjct: 318 K 318

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 9/97 (9%)

Query: 552 RQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEAR 611
            Q  ER  +EA      +  L  E+  + +  AAA         +  +A++R +   E  
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAAS--------KAKKAKSRIK-RLEKL 290

Query: 612 ERAERAAAEARERANAEAREKEARERASVARTEAEAL 648
           E          E      R     +R      E E +
Sbjct: 291 EARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENV 327

Length = 530

>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 38/131 (29%), Positives = 51/131 (38%), Gaps = 7/131 (5%)

Query: 557 RATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAER 616
           R+       AA EAR  A   A   A AA  E    A +   +A A    AA+  ERA +
Sbjct: 261 RSPERKERAAAREARAAAAAPAATAAAAAPAEEPAVAPMAAIRA-AHVETAADKGERAAK 319

Query: 617 AAAEAR------ERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAE 670
            AA  +      +R +A  +  E    A+    +  A Q A+ A+       A   AAA 
Sbjct: 320 PAAADKAADKPADRPDAAEKAAEKPAEAAPRAADKPAGQAADPASSSADKPGASADAAAR 379

Query: 671 ARERAAAAARA 681
              RA  AA  
Sbjct: 380 TPARARDAAAP 390

Length = 413

>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 502 REMQQREKGEEQRRLEREREREREEKER--EKKRIEKEKERAREIEKEREKARQA 554
           R ++Q E+ EE++R E ERER     +   E+ R++++ +  ++ E E  + R A
Sbjct: 117 RFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHRAA 171

The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as activator-binding sites, core-promoter recognition or a role in essential catalytic activity. Each TAF, with the help of a specific activator, is required only for the expression of subset of genes and is not universally involved for transcription as are GTFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. Several TAFs interact via histone-fold (HFD) motifs; HFD is the interaction motif involved in heterodimerization of the core histones and their assembly into nucleosome octamers. The minimal HFD contains three alpha-helices linked by two loops and is found in core histones, TAFS and many other transcription factors. TFIID has a histone octamer-like substructure. TAF4 domain interacts with TAF12 and makes a novel histone-like heterodimer that binds DNA and has a core promoter function of a subset of genes. Length = 212

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 499 RLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREI 544
             D+E  QREK EE+  L+ ++   + +K+ EKK+ E EK    +I
Sbjct: 547 LDDKEELQREK-EEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKI 591

Length = 651

>gnl|CDD|237478 PRK13709, PRK13709, conjugal transfer nickase/helicase TraI; Provisional

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 5/112 (4%)

Query: 525  EEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANA 584
                 E    E   +R  E    RE  R    RA    R+ A  +  L   +      + 
Sbjct: 1632 GAGNGEPVTAEVLAQRQAEEAIRRETER----RADEIVRKMAENKPDLPDGKTEQAVRDI 1687

Query: 585  AARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARE 636
            A +ER   A  +R  A   E    E +   E     ARE    E  ++  R+
Sbjct: 1688 AGQERDRAAISERE-AALPESVLREPQREREAVREVARENLLRERLQQMERD 1738

Length = 1747

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 40.6 bits (95), Expect = 0.004
 Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 10/141 (7%)

Query: 540 RAREIEKEREKARQAVERATREARERAAAE----ARLKAERAAVDKANAAARERAERAAV 595
             R   +E++K ++A     R  R R          L AE A + K     R   +  A 
Sbjct: 289 EQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKT----RTAEKNEAK 344

Query: 596 QRAQAEARERAAA--EARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAER 653
            R +  A++R AA  E    A +  A A  RA A     +A+++  +  +  E       
Sbjct: 345 ARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDTPSENE 404

Query: 654 AAVQRAASEARERAAAEARER 674
            +            A   RE 
Sbjct: 405 ESKGSPPQVEATTTAEPNREP 425

Length = 429

>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 542 REIEKEREKARQAVERATREAR-ERAAAEARLKAERAAVDKANAAARERAERAAVQRAQA 600
           +   +++  A +       EA  E  AA  R + E  A     A     AE  A   A+A
Sbjct: 176 QAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEA-----AIILAEAEAEAEVIARA 230

Query: 601 EARERAAAEARERAERAAAEA 621
           EA       A  R   AA +A
Sbjct: 231 EADAAKIIAAALREAPAAPQA 251

Length = 291

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 37/167 (22%), Positives = 61/167 (36%), Gaps = 5/167 (2%)

Query: 487 REERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEK 546
           +E     +  +E + R  Q+  +  E+  LE E + ++EE+E +    + ++        
Sbjct: 8   QELEERMEQMEEDM-RRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRL 66

Query: 547 EREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERA 606
           E E A    ER   EA E   A A +       +K  A  R+  +     +   EA ERA
Sbjct: 67  EEEAAASEEERERLEA-EVDEATAEVAKLEEEREKKEAETRQLQQELREAQ---EAHERA 122

Query: 607 AAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAER 653
             E  E A    A     A     + E  +    A  + E     + 
Sbjct: 123 RQELLEAAAAPTAPPHVAAPVNGEQLEPDDNGEEASADLETDPDMKD 169

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional

 Score = 40.6 bits (95), Expect = 0.004
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 9/74 (12%)

Query: 547 EREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERA 606
           E  +AR+ +ER  RE ++R    A+LK ER    K   AA++R    A QR    +R   
Sbjct: 4   ELRRAREKLEREQRERKQR----AKLKLERERKAKE-EAAKQREAIEAAQR----SRRLD 54

Query: 607 AAEARERAERAAAE 620
           A EA+ +A++   E
Sbjct: 55  AIEAQIKADQQMQE 68

Length = 567

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 40.3 bits (95), Expect = 0.004
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 19/84 (22%)

Query: 457 RAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRL 516
             E   R   + RE E  K              +A +++ QE        +EK EE+++ 
Sbjct: 254 SPEVL-RKVDKTREEEEEKI------------LKAAEEERQEEA------QEKKEEKKKE 294

Query: 517 EREREREREEKEREKKRIEKEKER 540
           ERE +  +   E ++K  EKE+++
Sbjct: 295 EREAKLAKLSPEEQRKLEEKERKK 318

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|215974 pfam00529, HlyD, HlyD family secretion protein

 Score = 40.2 bits (94), Expect = 0.004
 Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 13/108 (12%)

Query: 580 DKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERAS 639
           D     A      A +  AQA+A+ R A     RAER   +A     A   E+EA     
Sbjct: 34  DPTPYQAALDRAEAELAAAQADAQARLA-----RAERDRLQALVAQAAIQSEQEADAAR- 87

Query: 640 VARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQK 687
                  A  R   AA + AAS+A+  AA +    A A    +  +  
Sbjct: 88  -------AALREALAASRGAASKAQLEAARDNLRSALALLPISLGRIG 128

Length = 304

>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 10/116 (8%)

Query: 435 SPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQ 494
           S E VE +I     A   +       + +      E+E  +  +  E    + +ER+ Q+
Sbjct: 184 SKEAVEEAILQTDQALTAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQE 243

Query: 495 DAQERLDREMQQREKGEEQRR-LERERER--EREEKEREKKRIEKEKERAREIEKE 547
             +       Q  EK E +R  L  E+ER  E + +E+E+   E  K  A  ++KE
Sbjct: 244 HVK-------QLIEKMEAEREKLLAEQERMLEHKLQEQEELLKEGFKTEAESLQKE 292

Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP. Length = 297

>gnl|CDD|222709 pfam14362, DUF4407, Domain of unknown function (DUF4407)

 Score = 39.9 bits (94), Expect = 0.004
 Identities = 35/131 (26%), Positives = 48/131 (36%), Gaps = 14/131 (10%)

Query: 496 AQERLDREMQQREKGEEQR--RLERER---EREREEKEREKKRIEKEKERAREIEKEREK 550
            QE       Q   G   +   L  E    + E +E + E       +E   E E     
Sbjct: 118 QQEEQAAAQAQVAAGFRPKIAALTAEIAALQAEIDEAQAEVNA--AYQEAQCEAEGTGGT 175

Query: 551 ARQAVERATREARE-RAAAEARLKAERAAVDKANAA--ARERAERAAVQRAQAEARERAA 607
                    +E RE   AA+ARL+  +A +D A A   A++ A     Q A AE + R  
Sbjct: 176 GVAGKGPVYKEKREKLDAAQARLETLKARLDAAIAQLEAQKAALERNRQAAVAEKQARIE 235

Query: 608 AE----ARERA 614
           A     AR  A
Sbjct: 236 ANDGLLARLEA 246

This family of proteins is found in bacteria. Proteins in this family are typically between 366 and 597 amino acids in length. There is a single completely conserved residue R that may be functionally important. Length = 297

>gnl|CDD|172947 PRK14472, PRK14472, F0F1 ATP synthase subunit B; Provisional

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 18/105 (17%)

Query: 566 AAAEARLKAERAAVDKANAAARE-----RAERAAVQRAQAEARERAAAEARERAERAAAE 620
           +A E R K  ++++D+A++A  E     R  R  + +A AEA ++   E +E AE+  AE
Sbjct: 45  SALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEA-DKIIREGKEYAEKLRAE 103

Query: 621 ARERANAEAR----------EKEARERASVARTEAE--ALQRAER 653
             E+A+ EA+          E+E R    V R E    A++ AE+
Sbjct: 104 ITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADLAVKGAEK 148

Length = 175

>gnl|CDD|172948 PRK14473, PRK14473, F0F1 ATP synthase subunit B; Provisional

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 590 AERAAVQRAQAEARERAA-AEARERAERAAAEARERANAEAREKEARERASVARTEAEAL 648
           AE+   Q A A+    A  A+AR+ A +  A+A+ERA A+  E  A+ R    + + EA 
Sbjct: 51  AEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEAR 110

Query: 649 QRAERAAVQRAASEARERAA 668
            +AE+   QR  SE + + A
Sbjct: 111 AQAEQER-QRMLSELKSQIA 129

Length = 164

>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 26/91 (28%), Positives = 55/91 (60%), Gaps = 2/91 (2%)

Query: 471 RESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKERE 530
           +E  K         P++E    Q  + +  DR+ ++++K +E++ + ++R+RE+ EKE  
Sbjct: 36  KEYLKLLEKEGYAVPEKESAEKQVKSSKE-DRKFEKKKKLDEKKEIAKQRKREQREKELA 94

Query: 531 KKRIEKEK-ERAREIEKEREKARQAVERATR 560
           K++ E EK E +++ +KERE+ R+ + + T+
Sbjct: 95  KRQKELEKIELSKKKQKERERRRKKLTKKTK 125

This is a family of proteins that are involved in rRNA processing. In a localisation study they were found to localise to the nucleus and nucleolus. The family also includes other metazoa members from plants to mammals where the protein has been named BR22 and is associated with TTF-1, thyroid transcription factor 1. In the lungs, the family binds TTF-1 to form a complex which influences the expression of the key lung surfactant protein-B (SP-B) and -C (SP-C), the small hydrophobic surfactant proteins that maintain surface tension in alveoli. Length = 150

>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component TAF4 family

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 20/57 (35%), Positives = 35/57 (61%)

Query: 502 REMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERA 558
           R + Q++K EE+RR+ER RE   E+ E+ + + + ++E+  E E+ R +A  A   A
Sbjct: 116 RFLAQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEETRHRAANATALA 172

This region of similarity is found in Transcription initiation factor TFIID component TAF4. Length = 255

>gnl|CDD|214880 smart00880, CHAD, The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 25/132 (18%), Positives = 37/132 (28%), Gaps = 1/132 (0%)

Query: 541 AREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQA 600
                  R + R  + R     R+      RL    AA+     A          +RA A
Sbjct: 48  REAAAALRAELRW-LARELGPLRDLDVLLERLLELLAALLPELPALDALVAALEARRAAA 106

Query: 601 EARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAA 660
                AA ++          +R  A    +     + A      A    R     ++RA 
Sbjct: 107 RRALLAALDSARYTALLLDLSRWLATPPWQPAADDKAARPLADFAAKALRRLLRKLRRAF 166

Query: 661 SEARERAAAEAR 672
             AR     EA 
Sbjct: 167 PAARALLDDEAL 178

It has conserved histidines that may chelate metals. Length = 262

>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 32/136 (23%), Positives = 66/136 (48%), Gaps = 8/136 (5%)

Query: 489 ERATQQD-AQERLDREMQQR--EKGEEQRRLEREREREREEKEREKKRIEKEKERAREIE 545
           ER  +++  +E+ ++++ ++  E  EE  +  +   +  EE+E++ + +EK  +   +I 
Sbjct: 97  EREQKEEEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVEEEEEKQMEILEKALKSYLKIV 156

Query: 546 KEREKARQAVERA-TREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARE 604
           KE  K+ Q + +A  +E+ ER   E ++  E     +    A + A     +  Q EA +
Sbjct: 157 KEENKSLQRLAKALQKESEERTQDETKMIEEY----RDKIDALKNAIEVEKEGLQEEAIQ 212

Query: 605 RAAAEARERAERAAAE 620
             A  + +  E AA E
Sbjct: 213 EIADMSADILEHAAEE 228

cryoelectron microscopy indicates that VP5 is a trimer implying that there are 360 copies of VP5 per virion. Length = 507

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	965
KOG0431	453	consensus Auxilin-like protein and related protein	100.0
PRK09510	387	tolA cell envelope integrity inner membrane protei	99.44
PTZ00121	2084	MAEBL; Provisional	99.35
COG3064	387	TolA Membrane protein involved in colicin uptake [	99.29
PRK09510	387	tolA cell envelope integrity inner membrane protei	98.82
TIGR02794	346	tolA_full TolA protein. TolA couples the inner mem	98.6
COG3064	387	TolA Membrane protein involved in colicin uptake [	98.42
TIGR02794	346	tolA_full TolA protein. TolA couples the inner mem	98.32
PTZ00266	1021	NIMA-related protein kinase; Provisional	98.14
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	98.05
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.84
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	97.61
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	97.55
KOG2072	988	consensus Translation initiation factor 3, subunit	97.54
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	97.37
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	97.15
KOG4364	811	consensus Chromatin assembly factor-I [Chromatin s	96.83
KOG4364	811	consensus Chromatin assembly factor-I [Chromatin s	96.77
PRK03578	176	hscB co-chaperone HscB; Provisional	96.62
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	96.62
PRK05014	171	hscB co-chaperone HscB; Provisional	96.59
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	96.57
KOG2072	988	consensus Translation initiation factor 3, subunit	96.43
PRK01356	166	hscB co-chaperone HscB; Provisional	96.39
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	96.38
PRK00294	173	hscB co-chaperone HscB; Provisional	96.31
PHA03102	153	Small T antigen; Reviewed	96.05
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	95.79
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	95.74
PRK10266	306	curved DNA-binding protein CbpA; Provisional	95.7
KOG4661	940	consensus Hsp27-ERE-TATA-binding protein/Scaffold	95.7
PRK14299	291	chaperone protein DnaJ; Provisional	95.61
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	95.5
KOG2891	445	consensus Surface glycoprotein [General function p	95.48
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	95.37
PRK14281	397	chaperone protein DnaJ; Provisional	95.3
PRK10767	371	chaperone protein DnaJ; Provisional	95.23
PRK14295	389	chaperone protein DnaJ; Provisional	95.2
PRK14280	376	chaperone protein DnaJ; Provisional	95.04
PRK14284	391	chaperone protein DnaJ; Provisional	94.92
PTZ00100	116	DnaJ chaperone protein; Provisional	94.88
PRK14276	380	chaperone protein DnaJ; Provisional	94.88
PRK14277	386	chaperone protein DnaJ; Provisional	94.87
PRK14278	378	chaperone protein DnaJ; Provisional	94.86
PRK14293	374	chaperone protein DnaJ; Provisional	94.85
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	94.76
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	94.76
PRK14285	365	chaperone protein DnaJ; Provisional	94.73
PRK14300	372	chaperone protein DnaJ; Provisional	94.72
PRK14283	378	chaperone protein DnaJ; Provisional	94.71
PRK14297	380	chaperone protein DnaJ; Provisional	94.69
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	94.52
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	94.51
PRK14288	369	chaperone protein DnaJ; Provisional	94.47
PRK14290	365	chaperone protein DnaJ; Provisional	94.47
PRK14296	372	chaperone protein DnaJ; Provisional	94.43
PTZ00037	421	DnaJ_C chaperone protein; Provisional	94.39
PRK14279	392	chaperone protein DnaJ; Provisional	94.28
PRK14301	373	chaperone protein DnaJ; Provisional	94.21
PRK14282	369	chaperone protein DnaJ; Provisional	94.21
PRK14291	382	chaperone protein DnaJ; Provisional	94.16
PRK14292	371	chaperone protein DnaJ; Provisional	94.14
PRK14286	372	chaperone protein DnaJ; Provisional	94.05
PRK14294	366	chaperone protein DnaJ; Provisional	94.01
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	93.96
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	93.9
PRK14298	377	chaperone protein DnaJ; Provisional	93.85
PRK14287	371	chaperone protein DnaJ; Provisional	93.56
PRK01773	173	hscB co-chaperone HscB; Provisional	93.35
PF12037	276	DUF3523: Domain of unknown function (DUF3523); Int	93.25
KOG4661	940	consensus Hsp27-ERE-TATA-binding protein/Scaffold	93.18
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	93.1
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	92.98
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	92.89
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	92.85
PRK14289	386	chaperone protein DnaJ; Provisional	92.73
PRK07735	430	NADH dehydrogenase subunit C; Validated	92.71
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	92.7
KOG2891	445	consensus Surface glycoprotein [General function p	92.5
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	92.43
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	92.41
PHA02624	647	large T antigen; Provisional	92.22
KOG2412	591	consensus Nuclear-export-signal (NES)-containing p	89.82
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	89.36
KOG2412	591	consensus Nuclear-export-signal (NES)-containing p	89.22
PF02029	492	Caldesmon: Caldesmon; InterPro: IPR006018 This gro	89.18
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	89.11
KOG3054	299	consensus Uncharacterized conserved protein [Funct	87.13
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	85.23
KOG3054	299	consensus Uncharacterized conserved protein [Funct	84.62
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	82.33
PRK00106	535	hypothetical protein; Provisional	82.06
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	81.4
PRK12704	520	phosphodiesterase; Provisional	80.94
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	80.92

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=100.00  E-value=6.1e-40  Score=375.05  Aligned_cols=224  Identities=43%  Similarity=0.595  Sum_probs=175.9

Q ss_pred             hhccccccccccCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCc-------cCCCCCCC-cccccCCCcccccchhhhhc
Q 002109          686 QKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPAR-------RTSVGASS-NMRKASSTTNIVDDLSSIFG  757 (965)
Q Consensus       686 ~~~~~dlesfFs~~Sr~sSaPrsr~~s~ds~fdsq~q~~~~~~~-------r~sss~S~-s~rkasSs~ni~DDlss~Fg  757 (965)
                      ....+.|++++....+.++++..+.+.++.|.+...-+..+...       ...++... +...+...++.......+|+
T Consensus       195 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  274 (453)
T KOG0431|consen  195 QATAPKADSFFNSTSRGASAPADPFADLDDLSSGSNASKSGSSSDLSSRVSPGITETTDSPPSKTSSPPNQQKKSPPDFQ  274 (453)
T ss_pred             cCCCccccccccccccCCCCCCCccccccchhhhcccCCCCCcccccCCCCCCCCCCCCCchhhhcccccchhccchhhh
Confidence            45666788899888888888887777766654443333222111       11111111 13344444455555444444


Q ss_pred             cCCC-------------CCC------ccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HH
Q 002109          758 AAGS-------------SAG------EFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAER----HR  814 (965)
Q Consensus       758 ~~~~-------------s~~------~f~~~~~e~~~rr~a~~~r~~~~~~r~~k~l~ek~~r~~~~~~eq~e~----~~  814 (965)
                      ..+-             -..      .+..+-|+..+++..+..++..+..+....+.++..+|++..++++++    .+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~k~~~~~ae~~~e~~r  354 (453)
T KOG0431|consen  275 AKPSSESPEASTQKRPNYAQKRSDVPPGNTERGKRAESSSTRTKKQMDTFSDLLNPQGFKSTSDEKRPREIAEMRKELSR  354 (453)
T ss_pred             cccCccchhhccccccchhccCCCCCcccccccccccccccccchhhhhhhhhhccccccchhhhhhHHHHHHHHHHHHh
Confidence            4310             011      122345778888999999999999999999999999999999999999    89


Q ss_pred             hHHhHHHHHHHHhccccccHHHHhhccccccCCCCCCccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHH
Q 002109          815 IAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIA  894 (965)
Q Consensus       815 l~d~~~~ki~~W~~gke~nIRaLLssL~~VLW~~~~W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA  894 (965)
                      |+|+|+.+|+.|..||++|||+||+|||||||++|||++|+|.|||+|++|||+|||||||||||||+|+|++++|||||
T Consensus       355 ~~e~~d~~I~~W~~GKE~NIRALLSTLh~VLW~es~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Ia  434 (453)
T KOG0431|consen  355 LMEPLDEEIRRWSEGKEGNIRALLSTLHYVLWPESGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIA  434 (453)
T ss_pred             hcchHHHHHHHhcccccccHHHHHHHHhHhhcCccCcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 002109          895 EKVFDLLKVQQIYCR  909 (965)
Q Consensus       895 ~~vF~~Ln~a~~~~r  909 (965)
                      +.||++|++||+.|.
T Consensus       435 ekvfd~l~eawn~f~  449 (453)
T KOG0431|consen  435 EKVFDALSEAWNKFN  449 (453)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999999986

>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional

Probab=99.44  E-value=1.1e-10  Score=132.16  Aligned_cols=47  Identities=23%  Similarity=0.167  Sum_probs=37.5

Q ss_pred             ccccccHHHHhhccccccCCCCCCccCcccccchhhhHhHHhhhccccccCc
Q 002109          828 AGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPD  879 (965)
Q Consensus       828 ~gke~nIRaLLssL~~VLW~~~~W~~v~~~dl~~~~~VKk~YrKA~l~vHPD  879 (965)
                      .|+.|.||..|...+.|++    ...+|.++-+|...+.- ++.+.+-+-||
T Consensus       324 ~gktc~VrI~LapDG~V~s----V~~sSGd~aldrAA~~A-ar~a~lP~pP~  370 (387)
T PRK09510        324 AGKTCTLRIKLAPDGTLLD----IKKEGGDPALCQAALAA-AKTAKIPKPPS  370 (387)
T ss_pred             cCceEEEEEEEcCCCcEEe----eeeCCCCHHHHHHHHHH-HHcCCCCCCCc
Confidence            3888999999999999994    35677777888877766 88888877775

>PTZ00121 MAEBL; Provisional

Probab=99.35  E-value=1.1e-09  Score=134.75  Aligned_cols=21  Identities=33%  Similarity=0.613  Sum_probs=14.8

Q ss_pred             eeeecccchhhhcccCccccc
Q 002109          937 FCCQFDDKLLLHANMNSEKYA  957 (965)
Q Consensus       937 ~~~~~~~~~~~~~~~~~~~~~  957 (965)
                      .|||..+-.|-.-|+||..|-
T Consensus      1974 LCCSISdYCLkYFn~nS~eYy 1994 (2084)
T PTZ00121       1974 LCCSISDFCLKYFDHNSNEYY 1994 (2084)
T ss_pred             hhhhHHHHHHHHcCCCchHHH
Confidence            577777777777777776663

>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

Probab=99.29  E-value=3.3e-09  Score=115.18  Aligned_cols=40  Identities=25%  Similarity=0.232  Sum_probs=34.3

Q ss_pred             hccccccHHHHhhccccccCCCCCCccCcccccchhhhHhHHhh
Q 002109          827 AAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYR  870 (965)
Q Consensus       827 ~~gke~nIRaLLssL~~VLW~~~~W~~v~~~dl~~~~~VKk~Yr  870 (965)
                      -.||.|.||.-|...++|+    ++++++..+-||...|.-+-+
T Consensus       323 f~gK~C~l~ikL~pdGtl~----~~~~~~Gd~~lCqAalsAvAk  362 (387)
T COG3064         323 FAGKTCRLRIKLAPDGTLL----DIKPEGGDPALCQAALSAVAK  362 (387)
T ss_pred             cCCceeEEEEEEcCCccee----eccccCCChHHHHHHHHHHHH
Confidence            3699999999999999988    899999999999987744433

>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional

Probab=98.82  E-value=3.6e-06  Score=95.99  Aligned_cols=18  Identities=17%  Similarity=0.438  Sum_probs=11.3

Q ss_pred             ccccccccCCCCCCCCCC
Q 002109          690 NDLESFFSMSSRPSSAPR  707 (965)
Q Consensus       690 ~dlesfFs~~Sr~sSaPr  707 (965)
                      ..|++||++....+.+|+
T Consensus       257 ~~~dd~~~gl~~~~~~~~  274 (387)
T PRK09510        257 AEVDDLFGGLDSGKNAPK  274 (387)
T ss_pred             HHHHHHhhcccccccccc
Confidence            348899987664433433

>TIGR02794 tolA_full TolA protein

Probab=98.60  E-value=1e-05  Score=91.71  Aligned_cols=17  Identities=35%  Similarity=0.372  Sum_probs=9.5

Q ss_pred             cccccHHHHhhcccccc
Q 002109          829 GKEGNIRALLATMQYVL  845 (965)
Q Consensus       829 gke~nIRaLLssL~~VL  845 (965)
                      |..|.|+..|...|.|+
T Consensus       284 g~~v~V~I~L~pdG~V~  300 (346)
T TIGR02794       284 GKTCRLRIRLAPDGTLL  300 (346)
T ss_pred             CCEEEEEEEECCCCCEE
Confidence            44555555555555555

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.

>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

Probab=98.42  E-value=0.00012  Score=80.49  Aligned_cols=21  Identities=24%  Similarity=0.366  Sum_probs=14.2

Q ss_pred             ccccccccccCCCCCCCCCCC
Q 002109          688 NDNDLESFFSMSSRPSSAPRP  708 (965)
Q Consensus       688 ~~~dlesfFs~~Sr~sSaPrs  708 (965)
                      ....|++||+.++....+|+.
T Consensus       257 ~~aaldD~fg~ls~g~~a~~~  277 (387)
T COG3064         257 AAAALDDIFGGLSSGKNAPKT  277 (387)
T ss_pred             HHhhHHHHhccccccCCCCCc
Confidence            334589999988865555553

>TIGR02794 tolA_full TolA protein

Probab=98.32  E-value=0.00014  Score=82.53  Aligned_cols=26  Identities=50%  Similarity=0.503  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002109          646 EALQRAERAAVQRAASEARERAAAEAR  672 (965)
Q Consensus       646 Ear~kaEreakerae~Ear~rae~eA~  672 (965)
                      +++.++|. +++++++++.++++.++.
T Consensus       193 eak~kae~-a~~ka~~ea~~ka~~~~~  218 (346)
T TIGR02794       193 EAKAKAEA-AKAKAAAEAAAKAEAEAA  218 (346)
T ss_pred             HHHHHHHH-HHHhhhhhHHHHHHHHHH
Confidence            33334443 444444444444444443

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=98.14  E-value=1.7e-05  Score=99.80  Aligned_cols=11  Identities=18%  Similarity=0.165  Sum_probs=6.4

Q ss_pred             cccchhhhccc
Q 002109          941 FDDKLLLHANM  951 (965)
Q Consensus       941 ~~~~~~~~~~~  951 (965)
                      |.++-|||-+-
T Consensus      1005 ~~~~~~~~~~~ 1015 (1021)
T PTZ00266       1005 YALKNFAHKGP 1015 (1021)
T ss_pred             HHHHhhhhcCC
Confidence            45666666543

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.05  E-value=0.0015  Score=78.72  Aligned_cols=9  Identities=33%  Similarity=0.350  Sum_probs=6.1

Q ss_pred             ccccccCCC
Q 002109          345 EIPLFTQPT  353 (965)
Q Consensus       345 ~i~l~~~P~  353 (965)
                      ++--+.+|+
T Consensus       259 ema~sGq~l  267 (1118)
T KOG1029|consen  259 EMAKSGQPL  267 (1118)
T ss_pred             HHHhcCCCC
Confidence            666677766

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=0.0085  Score=72.52  Aligned_cols=22  Identities=14%  Similarity=0.043  Sum_probs=15.2

Q ss_pred             cchhhhhhc--ceeeeeecccchh
Q 002109          925 DSFLVYYFG--CFTFCCQFDDKLL  946 (965)
Q Consensus       925 ~~~~~~~~~--~~~~~~~~~~~~~  946 (965)
                      -|||.=-|.  ..-|-|.|..++-
T Consensus       728 PGWlaGel~gktGWFPenyvEki~  751 (1118)
T KOG1029|consen  728 PGWLAGELRGKTGWFPENYVEKIP  751 (1118)
T ss_pred             cccccceeccccCcCcHHHHhhcc
Confidence            788877773  3457888877654

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=97.61  E-value=5.2e-05  Score=63.74  Aligned_cols=53  Identities=26%  Similarity=0.308  Sum_probs=43.8

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR  909 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r  909 (965)
                      |.-+++..-.+...||++|++.++.+|||+..+.      .-.+...|..|++||+.++
T Consensus         4 y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~------~~~~~~~~~~l~~Ay~~L~   56 (60)
T smart00271        4 YEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD------KEEAEEKFKEINEAYEVLS   56 (60)
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------hHHHHHHHHHHHHHHHHHc
Confidence            4445566667889999999999999999998642      4578999999999999875

>cd06257 DnaJ DnaJ domain or J-domain

Probab=97.55  E-value=7e-05  Score=61.78  Aligned_cols=51  Identities=25%  Similarity=0.282  Sum_probs=42.1

Q ss_pred             ccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109          852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR  909 (965)
Q Consensus       852 ~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r  909 (965)
                      .-+++..-.+...||++|++.+..+|||+..+.       -.+...|..|++||+.++
T Consensus         4 ~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~-------~~~~~~~~~l~~Ay~~L~   54 (55)
T cd06257           4 DILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-------PEAEEKFKEINEAYEVLS   54 (55)
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------HHHHHHHHHHHHHHHHhc
Confidence            344555667889999999999999999998641       578999999999998763

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]

Probab=97.54  E-value=0.3  Score=60.31  Aligned_cols=15  Identities=13%  Similarity=0.277  Sum_probs=6.4

Q ss_pred             ccccccccccccccC
Q 002109          337 EDVWLTVSEIPLFTQ  351 (965)
Q Consensus       337 ~dvwltvs~i~l~~~  351 (965)
                      +-||.+|||=.|.-.
T Consensus       442 SqiY~sIs~~~l~~L  456 (988)
T KOG2072|consen  442 SQIYESISFERLYKL  456 (988)
T ss_pred             HHHHHHHhHHHHHHH
Confidence            334444444333333

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=97.37  E-value=0.00014  Score=62.29  Aligned_cols=53  Identities=23%  Similarity=0.221  Sum_probs=42.9

Q ss_pred             ccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 002109          852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRF  910 (965)
Q Consensus       852 ~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~  910 (965)
                      .-+++..-.+...||++|++.+..+||||+.+.+      -.++.+|..|++||+.+.-
T Consensus         4 ~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~------~~~~~~~~~i~~Ay~~L~~   56 (64)
T PF00226_consen    4 EILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE------AEAEEKFARINEAYEILSD   56 (64)
T ss_dssp             HHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH------HHHHHHHHHHHHHHHHHHS
T ss_pred             HHCCCCCCCCHHHHHHHHHhhhhccccccchhhh------hhhhHHHHHHHHHHHHhCC
Confidence            3456666777899999999999999999987532      4678889999999987653

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=97.15  E-value=0.00037  Score=76.61  Aligned_cols=60  Identities=18%  Similarity=0.251  Sum_probs=50.0

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRF  910 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~  910 (965)
                      |+-+++..-.+...||++||+.++.+||||+..+|.+.+..-.|+.-|..|++||+..+-
T Consensus       203 y~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            344455556678999999999999999999988787777766799999999999988753

>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]

Probab=96.83  E-value=0.063  Score=64.58  Aligned_cols=13  Identities=23%  Similarity=0.376  Sum_probs=5.8

Q ss_pred             HHHHHHHHHhhhh
Q 002109          899 DLLKVQQIYCRFF  911 (965)
Q Consensus       899 ~~Ln~a~~~~r~~  911 (965)
                      +++++-.+++||+
T Consensus       673 ~ii~E~qE~~k~~  685 (811)
T KOG4364|consen  673 DIIDEDQEASKFS  685 (811)
T ss_pred             HHHHHHHHHHHHh
Confidence            3444444444443

>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]

Probab=96.77  E-value=0.049  Score=65.44  Aligned_cols=12  Identities=25%  Similarity=0.650  Sum_probs=5.7

Q ss_pred             ccccccchhhhhh
Q 002109          920 NLTMQDSFLVYYF  932 (965)
Q Consensus       920 ~~~~~~~~~~~~~  932 (965)
                      +|+..--|+ |++
T Consensus       752 ~lqv~~qw~-y~l  763 (811)
T KOG4364|consen  752 RLQVKKQWL-YKL  763 (811)
T ss_pred             cccccceee-eee
Confidence            344444453 555

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=96.62  E-value=0.0022  Score=66.65  Aligned_cols=62  Identities=21%  Similarity=0.238  Sum_probs=48.3

Q ss_pred             cchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhh-----ccccccccc
Q 002109          859 LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFIL-----LCLEGFNLT  922 (965)
Q Consensus       859 l~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~-----~~~~~~~~~  922 (965)
                      -+++..++++|++....+|||++.+.  +...+.+|...+..||+||..++=.+.     |.|+|+.++
T Consensus        19 ~~d~~~L~~~yr~lq~~~HPD~~~~~--~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~~~~   85 (176)
T PRK03578         19 ALDEAALDAAYRTVQAQVHPDRFAAA--GDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVDVQ   85 (176)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCC--CHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCCCCc
Confidence            36788999999999999999999753  334455777788999999887765554     567787664

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=96.62  E-value=0.0021  Score=65.55  Aligned_cols=62  Identities=21%  Similarity=0.233  Sum_probs=48.7

Q ss_pred             chhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhh-----cccccccccc
Q 002109          860 ITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFIL-----LCLEGFNLTM  923 (965)
Q Consensus       860 ~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~-----~~~~~~~~~~  923 (965)
                      |++..|+++|++....+|||++.+.+ ..++ -+|...|..||+||..++=.+.     |.|+|+++.-
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~-~~~~-~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~~~~~   69 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGS-AQEQ-LAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGIDLAS   69 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCC-hhhh-HHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCCCCc
Confidence            56789999999999999999997542 2344 5688899999999988775543     7788887643

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=96.59  E-value=0.0026  Score=65.70  Aligned_cols=62  Identities=23%  Similarity=0.306  Sum_probs=47.5

Q ss_pred             cchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhh-----hhccccccccc
Q 002109          859 LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFF-----ILLCLEGFNLT  922 (965)
Q Consensus       859 l~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~-----~~~~~~~~~~~  922 (965)
                      -++...|+++|++....+||||+..  .+...+.+|...|..||+||..++=.     -.+.|+|+.+.
T Consensus        14 ~~d~~~L~~~yr~l~~~~HPDk~~~--~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~~~~   80 (171)
T PRK05014         14 DIDTQLLASRYQELQRQFHPDKFAN--ASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGFDLA   80 (171)
T ss_pred             CCCHHHHHHHHHHHHHHhCcCCCCC--CcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCCccc
Confidence            4677899999999999999999974  33445567888999999998877533     33667777654

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.0019  Score=67.61  Aligned_cols=48  Identities=31%  Similarity=0.382  Sum_probs=38.8

Q ss_pred             cchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002109          859 LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFI  912 (965)
Q Consensus       859 l~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~  912 (965)
                      -++-..+|+-||+..+.|||||.+. +     .--|++.|++|..||..+---+
T Consensus        64 ev~~edikkryRklSilVHPDKN~D-d-----~~rAqkAFdivkKA~k~l~n~~  111 (250)
T KOG1150|consen   64 EVTDEDIKKRYRKLSILVHPDKNPD-D-----AERAQKAFDIVKKAYKLLENDK  111 (250)
T ss_pred             CCCHHHHHHHHHhhheeecCCCCcc-c-----HHHHHHHHHHHHHHHHHHhCHH
Confidence            3455899999999999999999874 2     3368999999999998754433

>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]

Probab=96.43  E-value=4.2  Score=50.93  Aligned_cols=6  Identities=17%  Similarity=0.279  Sum_probs=2.5

Q ss_pred             ccCCCC
Q 002109          349 FTQPTS  354 (965)
Q Consensus       349 ~~~P~s  354 (965)
                      +..|..
T Consensus       417 s~~~~~  422 (988)
T KOG2072|consen  417 SESPDK  422 (988)
T ss_pred             HcCCCc
Confidence            334444

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=96.39  E-value=0.0036  Score=64.45  Aligned_cols=60  Identities=25%  Similarity=0.238  Sum_probs=42.7

Q ss_pred             chhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhh-----hcccccccccc
Q 002109          860 ITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFI-----LLCLEGFNLTM  923 (965)
Q Consensus       860 ~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~-----~~~~~~~~~~~  923 (965)
                      ++...|+++|+++.+.+||||...    ...+..+-..|..||+||..++=.+     .|.|+|+++.-
T Consensus        16 id~~~L~~aYr~lq~~~HPDk~~~----~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g~~~~~   80 (166)
T PRK01356         16 IDLKILEKQYFAMQVKYHPDKAKT----LQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQNINLND   80 (166)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccCCCCCC
Confidence            677899999999999999999852    2334445456777777776655332     36778887643

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.38  E-value=0.0024  Score=73.93  Aligned_cols=54  Identities=28%  Similarity=0.364  Sum_probs=45.4

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC  908 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~  908 (965)
                      |.-+++..--+..++|++|||.|...||||+.    ++++|-.|+.+|..|..|++++
T Consensus        12 Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~----dpd~K~~AE~~F~~i~~AyEVL   65 (546)
T KOG0718|consen   12 YALLNLPKDATDEEIKKAYRRLSRLFHPDKHT----DPDQKKAAEEKFQRIQRAYEVL   65 (546)
T ss_pred             HHHhCCCcccCHHHHHHHHHHHHHhcCCcccC----ChhHHHHHHHHHHHHHHHHHHh
Confidence            33455555567799999999999999999997    4689999999999999998764

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=96.31  E-value=0.0043  Score=64.33  Aligned_cols=61  Identities=16%  Similarity=0.172  Sum_probs=47.6

Q ss_pred             cchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhh-----cccccccc
Q 002109          859 LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFIL-----LCLEGFNL  921 (965)
Q Consensus       859 l~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~-----~~~~~~~~  921 (965)
                      -|+...|+++|++....+|||++...  +...+.+|...|..||+||..++=.+.     |.|+|+.+
T Consensus        17 ~id~~~L~~~Yr~Lq~~~HPDk~~~~--~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~~~   82 (173)
T PRK00294         17 RLDLDQLATRYRELAREVHPDRFADA--PEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGHEV   82 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCC--cHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCCC
Confidence            46789999999999999999999753  333455777889999999988765554     56677654

>PHA03102 Small T antigen; Reviewed

Probab=96.05  E-value=0.0068  Score=61.79  Aligned_cols=46  Identities=17%  Similarity=0.235  Sum_probs=31.1

Q ss_pred             hhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 002109          861 TAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRF  910 (965)
Q Consensus       861 ~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~  910 (965)
                      +...||++|++.++.+||||.    .+.+.-...+..|.+|.+...+.+|
T Consensus        20 s~~eIKkAYr~la~~~HPDkg----g~~e~~k~in~Ay~~L~d~~~r~~y   65 (153)
T PHA03102         20 NLPLMRKAYLRKCLEFHPDKG----GDEEKMKELNTLYKKFRESVKSLRD   65 (153)
T ss_pred             CHHHHHHHHHHHHHHHCcCCC----chhHHHHHHHHHHHHHhhHHHhccc
Confidence            668899999999999999993    2333222245555556555555555

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.79  E-value=0.0078  Score=67.67  Aligned_cols=80  Identities=21%  Similarity=0.326  Sum_probs=48.7

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhhhhh--ccccccc--cccc-
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRFFIL--LCLEGFN--LTMQ-  924 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~~~~--~~~~~~~--~~~~-  924 (965)
                      |+-+++.-.-+...||++|||..|.+||||.+. +.....++. ....|.+|++--+|-.|--.  -+|.-+|  ++|+ 
T Consensus        19 YelLgV~k~Asd~eIKkAYRKLALk~HPDkNpd-dp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~~~g~   97 (336)
T KOG0713|consen   19 YELLGVPKNASDQEIKKAYRKLALKYHPDKNPD-DPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDGEGGG   97 (336)
T ss_pred             HHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccccccCC
Confidence            555566666677999999999999999999985 221111111 33444444444445555444  4455444  6663 


Q ss_pred             ---cchhhhh
Q 002109          925 ---DSFLVYY  931 (965)
Q Consensus       925 ---~~~~~~~  931 (965)
                         +.|.+|.
T Consensus        98 ~~~~~f~~~f  107 (336)
T KOG0713|consen   98 GGNDIFSAFF  107 (336)
T ss_pred             cccchHHHhh
Confidence               5676553

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=95.74  E-value=0.21  Score=61.06  Aligned_cols=11  Identities=36%  Similarity=0.613  Sum_probs=7.4

Q ss_pred             cccccCccccc
Q 002109          873 TLCIHPDKVQQ  883 (965)
Q Consensus       873 ~l~vHPDK~~~  883 (965)
                      -+-+||||-++
T Consensus      1184 Qm~l~~~kpP~ 1194 (1259)
T KOG0163|consen 1184 QMELHPDKPPI 1194 (1259)
T ss_pred             hheecCCCCCe
Confidence            45678887665

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=95.70  E-value=0.0065  Score=67.99  Aligned_cols=51  Identities=18%  Similarity=0.191  Sum_probs=37.8

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR  909 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r  909 (965)
                      |.-+++....+...||++|++..+.+|||+...  .      .|+..|..||+||..+.
T Consensus         7 y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~--~------~~~~~f~~i~~Ay~~L~   57 (306)
T PRK10266          7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE--P------DAEARFKEVAEAWEVLS   57 (306)
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--c------cHHHHHHHHHHHHHHhh
Confidence            455566667788999999999999999999542  1      35666667777766654

>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]

Probab=95.70  E-value=0.095  Score=62.00  Aligned_cols=17  Identities=29%  Similarity=0.403  Sum_probs=8.9

Q ss_pred             CCCCCccccccCCCCCC
Q 002109           57 RESSPLDDLLGNLGKKE   73 (965)
Q Consensus        57 ~~~~~~dDllgg~g~~~   73 (965)
                      +++..+|||+..|--..
T Consensus       148 ~edgd~D~l~~sl~Ds~  164 (940)
T KOG4661|consen  148 VEDGDVDDLCVSLDDSD  164 (940)
T ss_pred             cccccccchhhhhcchH
Confidence            34445556655555444

>PRK14299 chaperone protein DnaJ; Provisional

Probab=95.61  E-value=0.0074  Score=67.12  Aligned_cols=53  Identities=17%  Similarity=0.135  Sum_probs=38.5

Q ss_pred             ccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002109          852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFI  912 (965)
Q Consensus       852 ~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~  912 (965)
                      .-+++..-.+...||++|||+.+.+|||+...  .      -|+..|..||+||+.+.-..
T Consensus         8 ~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~------~~~~~f~~i~~Ay~~L~d~~   60 (291)
T PRK14299          8 AILGVPKNASQDEIKKAFKKLARKYHPDVNKS--P------GAEEKFKEINEAYTVLSDPE   60 (291)
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--h------hHHHHHHHHHHHHHHhcCHH
Confidence            44455556678999999999999999999752  1      14556777888877765433

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=95.50  E-value=0.24  Score=60.57  Aligned_cols=15  Identities=13%  Similarity=-0.042  Sum_probs=8.0

Q ss_pred             ccccccCCCCCCCCC
Q 002109          278 DSLRSAGRATSPPSY  292 (965)
Q Consensus       278 n~~~~~~~~~~~~~~  292 (965)
                      |-.|-+-|.++..+.
T Consensus       554 ~HfRL~~PRkSklks  568 (1259)
T KOG0163|consen  554 NHFRLDLPRKSKLKS  568 (1259)
T ss_pred             cceeecCCchhhhhh
Confidence            445555555555554

>KOG2891 consensus Surface glycoprotein [General function prediction only]

Probab=95.48  E-value=2.4  Score=47.08  Aligned_cols=15  Identities=27%  Similarity=0.297  Sum_probs=11.4

Q ss_pred             ccccccCCCCCCCCC
Q 002109          345 EIPLFTQPTSAPPPS  359 (965)
Q Consensus       345 ~i~l~~~P~saPPpS  359 (965)
                      +|.++.||..-|..+
T Consensus       187 ~ir~vdipicdplr~  201 (445)
T KOG2891|consen  187 EIRNVDIPICDPLRE  201 (445)
T ss_pred             cceecCCcccchhHH
Confidence            888888888776554

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.37  E-value=0.012  Score=67.56  Aligned_cols=61  Identities=16%  Similarity=0.331  Sum_probs=48.4

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRFFI  912 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~~~  912 (965)
                      |.-+++.---+...|||+|||+.+.+|||+... ....|.|+. ++..|.+|.+..++--|-.
T Consensus         7 YeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g-~~~AeeKFKEI~eAYEVLsD~eKRa~YD~   68 (371)
T COG0484           7 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNPG-DKEAEEKFKEINEAYEVLSDPEKRAAYDQ   68 (371)
T ss_pred             hhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHHHHhCCHHHHHHhhc
Confidence            445566666788999999999999999999983 234677777 7888888888888877763

>PRK14281 chaperone protein DnaJ; Provisional

Probab=95.30  E-value=0.012  Score=68.11  Aligned_cols=54  Identities=24%  Similarity=0.276  Sum_probs=38.7

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFF  911 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~  911 (965)
                      |.-+++..-.+...||++|+|+.+.+||||.... .      -|+..|..||+||+++.=.
T Consensus         6 y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~------~a~~~f~~i~~Ay~vL~d~   59 (397)
T PRK14281          6 YEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN-K------EAEEHFKEVNEAYEVLSND   59 (397)
T ss_pred             hhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-h------HHHHHHHHHHHHHHHhhhh
Confidence            3444555556778999999999999999997531 1      2456777777777776543

>PRK10767 chaperone protein DnaJ; Provisional

Probab=95.23  E-value=0.013  Score=67.26  Aligned_cols=52  Identities=23%  Similarity=0.340  Sum_probs=37.6

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR  909 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r  909 (965)
                      |.-+++..-.+...||++|+|+.+.+||||.... .      .|+..|..||+||+.+.
T Consensus         7 y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-~------~a~~~f~~i~~Ay~~L~   58 (371)
T PRK10767          7 YEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-K------EAEEKFKEIKEAYEVLS   58 (371)
T ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-H------HHHHHHHHHHHHHHHhc
Confidence            4455666667789999999999999999997521 1      25566777777766653

>PRK14295 chaperone protein DnaJ; Provisional

Probab=95.20  E-value=0.014  Score=67.65  Aligned_cols=51  Identities=27%  Similarity=0.311  Sum_probs=38.6

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC  908 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~  908 (965)
                      |.-+++..-.+...||++|||+.+.+||||.... .      .|+..|..||+||..+
T Consensus        12 y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~------~a~~~f~~i~~Ay~vL   62 (389)
T PRK14295         12 YKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD-A------KAEERFKEISEAYDVL   62 (389)
T ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-h------hHHHHHHHHHHHHHHH
Confidence            5556666677889999999999999999997531 1      2566777777777765

>PRK14280 chaperone protein DnaJ; Provisional

Probab=95.04  E-value=0.016  Score=66.81  Aligned_cols=50  Identities=20%  Similarity=0.328  Sum_probs=34.7

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC  908 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~  908 (965)
                      |.-+++..-.+...||++|+|+.+.+|||+...  ..      |+..|..||+||..+
T Consensus         7 y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~------a~~~f~~i~~Ay~vL   56 (376)
T PRK14280          7 YEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE--EG------ADEKFKEISEAYEVL   56 (376)
T ss_pred             HHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cc------HHHHHHHHHHHHHHh
Confidence            445566666788899999999999999999753  22      333455555555443

>PRK14284 chaperone protein DnaJ; Provisional

Probab=94.92  E-value=0.018  Score=66.65  Aligned_cols=54  Identities=26%  Similarity=0.289  Sum_probs=39.4

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFF  911 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~  911 (965)
                      |.-+++..-.++..||++|||..+.+|||+.... .      -|+..|..|++||+++...
T Consensus         4 y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~------~a~~~f~~i~~Ay~vL~d~   57 (391)
T PRK14284          4 YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD-A------EAEKRFKEVSEAYEVLSDA   57 (391)
T ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-h------HHHHHHHHHHHHHHHhcCH
Confidence            3445555567889999999999999999997631 1      2555677777777776543

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=94.88  E-value=0.021  Score=55.84  Aligned_cols=47  Identities=11%  Similarity=0.216  Sum_probs=35.9

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC  908 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~  908 (965)
                      |+.+++..-.+...|+++|++.++.+|||+-   | +.       .+|..||+||+++
T Consensus        68 y~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---G-s~-------~~~~kIneAyevL  114 (116)
T PTZ00100         68 YKILNISPTASKERIREAHKQLMLRNHPDNG---G-ST-------YIASKVNEAKDLL  114 (116)
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---C-CH-------HHHHHHHHHHHHH
Confidence            4455666666789999999999999999982   3 32       2567899998875

>PRK14276 chaperone protein DnaJ; Provisional

Probab=94.88  E-value=0.018  Score=66.31  Aligned_cols=50  Identities=18%  Similarity=0.286  Sum_probs=34.7

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC  908 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~  908 (965)
                      |.-+++..-.+...||++|+|+.+.+|||+...  ...      +..|..||+||+++
T Consensus         7 y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~a------~~~f~~i~~Ay~vL   56 (380)
T PRK14276          7 YDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE--PGA------EEKYKEVQEAYETL   56 (380)
T ss_pred             HHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cCH------HHHHHHHHHHHHHh
Confidence            444566666788999999999999999999763  222      33455555555543

>PRK14277 chaperone protein DnaJ; Provisional

Probab=94.87  E-value=0.018  Score=66.44  Aligned_cols=52  Identities=21%  Similarity=0.258  Sum_probs=37.3

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR  909 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r  909 (965)
                      |.-+++..-.+...||++|||+.+.+||||.... .      -|+..|..||+||+.+.
T Consensus         8 y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~------~a~~~f~~i~~Ay~vL~   59 (386)
T PRK14277          8 YEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD-K------EAEQKFKEINEAYEILS   59 (386)
T ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-h------HHHHHHHHHHHHHHHhC
Confidence            4556666677889999999999999999997531 1      24455666666665543

>PRK14278 chaperone protein DnaJ; Provisional

Probab=94.86  E-value=0.021  Score=65.77  Aligned_cols=50  Identities=22%  Similarity=0.320  Sum_probs=37.5

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC  908 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~  908 (965)
                      |.-+++..-.+...||++|||..+.+|||+...  .      -|+..|..|++||+.+
T Consensus         6 y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~--~------~a~~~f~~i~~Ay~vL   55 (378)
T PRK14278          6 YGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--E------EAQEKFKEISVAYEVL   55 (378)
T ss_pred             ceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc--H------HHHHHHHHHHHHHHHh
Confidence            455566666778999999999999999999752  1      2456677777777665

>PRK14293 chaperone protein DnaJ; Provisional

Probab=94.85  E-value=0.022  Score=65.59  Aligned_cols=60  Identities=13%  Similarity=0.343  Sum_probs=38.5

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHH-HHHHHHHHHHHHHHHhhhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKY-IAEKVFDLLKVQQIYCRFFI  912 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~-iA~~vF~~Ln~a~~~~r~~~  912 (965)
                      |.-+++..-.+...||++|++..+.+|||+...  ...++++ ..+..|.+|.+...+..|-.
T Consensus         6 y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~vL~~~~~R~~yd~   66 (374)
T PRK14293          6 YEILGVSRDADKDELKRAYRRLARKYHPDVNKE--PGAEDRFKEINRAYEVLSDPETRARYDQ   66 (374)
T ss_pred             hhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHHHHHHHhchHHHHHHhh
Confidence            455566667788999999999999999999763  2222322 24444444444444444443

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.76  E-value=0.023  Score=62.28  Aligned_cols=56  Identities=23%  Similarity=0.285  Sum_probs=41.6

Q ss_pred             cccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 002109          855 SLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRF  910 (965)
Q Consensus       855 ~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~  910 (965)
                      ++....+...|||+||+..+++||||.......++.=++.+.++.+|.++..+.=|
T Consensus        38 gl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~Y   93 (279)
T KOG0716|consen   38 GLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVY   93 (279)
T ss_pred             CCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhH
Confidence            33345677889999999999999999875322456656678888888877766655

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=94.76  E-value=0.22  Score=61.20  Aligned_cols=6  Identities=33%  Similarity=0.639  Sum_probs=3.4

Q ss_pred             cccHHH
Q 002109          831 EGNIRA  836 (965)
Q Consensus       831 e~nIRa  836 (965)
                      ..|||.
T Consensus       470 ~~~lRS  475 (1064)
T KOG1144|consen  470 TENLRS  475 (1064)
T ss_pred             chhcCC
Confidence            346665

>PRK14285 chaperone protein DnaJ; Provisional

Probab=94.73  E-value=0.017  Score=66.38  Aligned_cols=51  Identities=25%  Similarity=0.371  Sum_probs=34.8

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC  908 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~  908 (965)
                      |.-+++....+...||++|||+.+.+||||.... ..      |+..|..|++||+++
T Consensus         6 y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~------a~~~f~~i~~Ay~vL   56 (365)
T PRK14285          6 YEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN-KE------AESIFKEATEAYEVL   56 (365)
T ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-HH------HHHHHHHHHHHHHHH
Confidence            4445666677889999999999999999997531 11      344555555555443

>PRK14300 chaperone protein DnaJ; Provisional

Probab=94.72  E-value=0.021  Score=65.66  Aligned_cols=51  Identities=25%  Similarity=0.357  Sum_probs=36.1

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR  909 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r  909 (965)
                      |+-+++..-.+...||++|+|+.+.+|||+...  ..      |+..|..||+||+.+.
T Consensus         6 y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~--~~------~~~~f~~i~~Ay~~L~   56 (372)
T PRK14300          6 YQILGVSKTASQADLKKAYLKLAKQYHPDTTDA--KD------AEKKFKEINAAYDVLK   56 (372)
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cC------HHHHHHHHHHHHHHhh
Confidence            556667777888999999999999999999752  22      3334555555555443

>PRK14283 chaperone protein DnaJ; Provisional

Probab=94.71  E-value=0.02  Score=65.97  Aligned_cols=59  Identities=19%  Similarity=0.343  Sum_probs=39.9

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRFF  911 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~~  911 (965)
                      |.-+++..-.+...||++|+|+.+.+||||...  ...+.++- ....|.+|.+...+..|-
T Consensus         8 y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~~Lsd~~kR~~YD   67 (378)
T PRK14283          8 YEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKRQRYD   67 (378)
T ss_pred             HHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhchhHHHHHHh
Confidence            555667777788999999999999999999753  22333333 455555555555555553

>PRK14297 chaperone protein DnaJ; Provisional

Probab=94.69  E-value=0.021  Score=65.76  Aligned_cols=56  Identities=21%  Similarity=0.231  Sum_probs=40.3

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFIL  913 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~  913 (965)
                      |.-+++..-.+...||++|+|+.+.+||||.... .      -|+..|..||+||+.+.=...
T Consensus         7 y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~------~a~~~f~~i~~Ay~vL~d~~~   62 (380)
T PRK14297          7 YEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN-K------EAEEKFKEINEAYQVLSDPQK   62 (380)
T ss_pred             HHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-H------HHHHHHHHHHHHHHHhcCHhh
Confidence            3444555556778999999999999999997531 1      256678888888777655443

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.52  E-value=0.035  Score=62.09  Aligned_cols=49  Identities=33%  Similarity=0.384  Sum_probs=36.7

Q ss_pred             cCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109          853 PVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC  908 (965)
Q Consensus       853 ~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~  908 (965)
                      -+++....+...|||+|++-.|.|||||++.   +++    |..=|..|.+|+..+
T Consensus        10 lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~---dP~----A~ekFq~L~eAy~VL   58 (296)
T KOG0691|consen   10 LLGISEDATDAEIKKAYRKKALQYHPDKNPG---DPQ----AAEKFQELSEAYEVL   58 (296)
T ss_pred             HhCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---ChH----HHHHHHHHHHHHHHh
Confidence            3566677788999999999999999999984   222    566666666665543

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=94.51  E-value=0.025  Score=64.42  Aligned_cols=57  Identities=18%  Similarity=0.361  Sum_probs=34.9

Q ss_pred             cCcccccchhhhHhHHhhhccccccCccccccCCCHHHHH-HHHHHHHHHHHHHHHhhhh
Q 002109          853 PVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKY-IAEKVFDLLKVQQIYCRFF  911 (965)
Q Consensus       853 ~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~-iA~~vF~~Ln~a~~~~r~~  911 (965)
                      -+++..-.+...||++|+++.+.+||||...  ...++++ .....|.+|.+.-.+..|-
T Consensus         5 ~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~yd   62 (354)
T TIGR02349         5 ILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRAQYD   62 (354)
T ss_pred             hCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhhChHHHHhhh
Confidence            3445555677899999999999999999862  2222322 1334444444444444443

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14288 chaperone protein DnaJ; Provisional

Probab=94.47  E-value=0.026  Score=64.87  Aligned_cols=51  Identities=25%  Similarity=0.381  Sum_probs=35.4

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC  908 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~  908 (965)
                      |.-+++..-.+...||++|||..+.+||||.... ..      |+.-|..||+||+++
T Consensus         6 Y~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~-~~------a~~~f~~i~~AYevL   56 (369)
T PRK14288          6 YEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD-KE------AEEKFKLINEAYGVL   56 (369)
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cH------HHHHHHHHHHHHHHh
Confidence            4555666667889999999999999999997531 11      344455555555443

>PRK14290 chaperone protein DnaJ; Provisional

Probab=94.47  E-value=0.03  Score=64.22  Aligned_cols=57  Identities=19%  Similarity=0.144  Sum_probs=43.3

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFIL  913 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~  913 (965)
                      |.-+++..-.+...||++||++.+.+|||+...   +   .-.|+..|..||+||..+.-...
T Consensus         6 y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~---~~~a~~~f~~i~~Ay~~L~d~~~   62 (365)
T PRK14290          6 YKILGVDRNASQEDIKKAFRELAKKWHPDLHPG---N---KAEAEEKFKEISEAYEVLSDPQK   62 (365)
T ss_pred             hhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---c---hhHHHHHHHHHHHHHHHhcChhh
Confidence            455566666788999999999999999999642   1   11367788888888887766554

>PRK14296 chaperone protein DnaJ; Provisional

Probab=94.43  E-value=0.029  Score=64.57  Aligned_cols=60  Identities=15%  Similarity=0.294  Sum_probs=42.3

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRFFI  912 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~~~  912 (965)
                      |.-+++..-.+...||++|||+.+.+||||...  ...+.+|- ....|.+|.+.-++..|--
T Consensus         7 Y~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~--~~a~~~F~~i~~AyevLsD~~KR~~YD~   67 (372)
T PRK14296          7 YEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS--PDAHDKMVEINEAADVLLDKDKRKQYDQ   67 (372)
T ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHHHHhcCHHHhhhhhh
Confidence            445566666778999999999999999999753  23344443 5666666766666666664

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=94.39  E-value=0.028  Score=65.80  Aligned_cols=57  Identities=23%  Similarity=0.378  Sum_probs=40.0

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHH-HHHHHHHHHHHHHHHhhhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKY-IAEKVFDLLKVQQIYCRFFI  912 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~-iA~~vF~~Ln~a~~~~r~~~  912 (965)
                      |.-+++..-.+...||++|||..+.+||||..    + +.+| .....|.+|.+.+++..|-.
T Consensus        31 Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~----~-~e~F~~i~~AYevLsD~~kR~~YD~   88 (421)
T PTZ00037         31 YEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG----D-PEKFKEISRAYEVLSDPEKRKIYDE   88 (421)
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc----h-HHHHHHHHHHHHHhccHHHHHHHhh
Confidence            34455555567899999999999999999963    2 2333 25666777776666666765

>PRK14279 chaperone protein DnaJ; Provisional

Probab=94.28  E-value=0.026  Score=65.39  Aligned_cols=32  Identities=28%  Similarity=0.505  Sum_probs=26.4

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCcccc
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQ  882 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~  882 (965)
                      |.-+++..-.+...||++|||+.+.+||||..
T Consensus        12 y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~   43 (392)
T PRK14279         12 YKELGVSSDASAEEIKKAYRKLARELHPDANP   43 (392)
T ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC
Confidence            34556666667799999999999999999975

>PRK14301 chaperone protein DnaJ; Provisional

Probab=94.21  E-value=0.029  Score=64.59  Aligned_cols=60  Identities=23%  Similarity=0.462  Sum_probs=37.1

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRFF  911 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~~  911 (965)
                      |.-+++..-.+...||++|||+.+.+||||.... ...++++- ....|.+|++.-.+-.|-
T Consensus         7 y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD   67 (373)
T PRK14301          7 YEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-PEAEQKFKEAAEAYEVLRDAEKRARYD   67 (373)
T ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC-hHHHHHHHHHHHHHHHhcchhhhhhhh
Confidence            3444555556778999999999999999998632 12233322 344455555544444444

>PRK14282 chaperone protein DnaJ; Provisional

Probab=94.21  E-value=0.033  Score=63.98  Aligned_cols=62  Identities=16%  Similarity=0.326  Sum_probs=39.0

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRFFI  912 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~~~  912 (965)
                      |+-+++.--.+...||++|+|+.+.+|||+........+++|- ....|.+|.+.-.+..|-.
T Consensus         7 y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~   69 (369)
T PRK14282          7 YEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDR   69 (369)
T ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhh
Confidence            4455666667889999999999999999997531111233332 3444555555545555543

>PRK14291 chaperone protein DnaJ; Provisional

Probab=94.16  E-value=0.039  Score=63.77  Aligned_cols=60  Identities=17%  Similarity=0.288  Sum_probs=41.5

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHH-HHHHHHHHHHHHHHHhhhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKY-IAEKVFDLLKVQQIYCRFFI  912 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~-iA~~vF~~Ln~a~~~~r~~~  912 (965)
                      |.-+++..-.+...||++||++.+.+||||...  ...+++| .....|.+|++...+.-|-.
T Consensus         6 Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vLsd~~kR~~YD~   66 (382)
T PRK14291          6 YEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKRKLYDQ   66 (382)
T ss_pred             HHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence            344556666678999999999999999999763  2334443 25566666666666666654

>PRK14292 chaperone protein DnaJ; Provisional

Probab=94.14  E-value=0.033  Score=64.00  Aligned_cols=58  Identities=21%  Similarity=0.400  Sum_probs=35.5

Q ss_pred             ccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHH-HHHHHHHHHHHHHHHhhhh
Q 002109          852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKY-IAEKVFDLLKVQQIYCRFF  911 (965)
Q Consensus       852 ~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~-iA~~vF~~Ln~a~~~~r~~  911 (965)
                      .-+++..-.+...||++|+|+.+.+|||+....  ..++++ .....|.+|.+...+..|-
T Consensus         6 ~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~--~a~~~~~~i~~Ay~vL~d~~~r~~yd   64 (371)
T PRK14292          6 ELLGVSRTASADEIKSAYRKLALKYHPDRNKEK--GAAEKFAQINEAYAVLSDAEKRAHYD   64 (371)
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCh--hHHHHHHHHHHHHHHhcchhhhhhHh
Confidence            334555556788999999999999999997632  222222 1344444444444444444

>PRK14286 chaperone protein DnaJ; Provisional

Probab=94.05  E-value=0.035  Score=63.93  Aligned_cols=59  Identities=19%  Similarity=0.366  Sum_probs=35.2

Q ss_pred             ccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhhh
Q 002109          852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRFF  911 (965)
Q Consensus       852 ~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~~  911 (965)
                      .-+++.--.+...||++||++.+.+||||.... ...+++|- ....|.+|++...+..|-
T Consensus         8 ~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD   67 (372)
T PRK14286          8 DILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN-KESEEKFKEATEAYEILRDPKKRQAYD   67 (372)
T ss_pred             HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            334455556678899999999999999997531 11222221 344444444444444444

>PRK14294 chaperone protein DnaJ; Provisional

Probab=94.01  E-value=0.037  Score=63.57  Aligned_cols=52  Identities=23%  Similarity=0.309  Sum_probs=36.6

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR  909 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r  909 (965)
                      |.-+++..-.+...||++|||+.+.+||||.... .      -|+..|..|++||+.+.
T Consensus         7 y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~------~~~~~f~~~~~Ay~vL~   58 (366)
T PRK14294          7 YEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD-K------EAEELFKEAAEAYEVLS   58 (366)
T ss_pred             HHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-h------HHHHHHHHHHHHHHHhc
Confidence            3445555567789999999999999999997631 1      24555666666666554

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=93.96  E-value=0.036  Score=69.63  Aligned_cols=74  Identities=9%  Similarity=0.062  Sum_probs=46.9

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhhc------cccccc-ccc
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFILL------CLEGFN-LTM  923 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~~------~~~~~~-~~~  923 (965)
                      |.-+++..-.+...||++|+|+.+.+||||.+.  ..      |..-|..|++||.++.-...|      ...|.. ..|
T Consensus       576 YdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~--~~------A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~~~~  647 (1136)
T PTZ00341        576 YDILGVGVNADMKEISERYFKLAENYYPPKRSG--NE------GFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKGVNF  647 (1136)
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ch------HHHHHHHHHHHHHHhCCHHHHHHHhhccccccCCCCc
Confidence            455666666788999999999999999999763  11      444566666666555433332      222322 133


Q ss_pred             ccchhhhhh
Q 002109          924 QDSFLVYYF  932 (965)
Q Consensus       924 ~~~~~~~~~  932 (965)
                      -+.|+-||+
T Consensus       648 iDP~~Ffml  656 (1136)
T PTZ00341        648 IHPSIFYLL  656 (1136)
T ss_pred             cCHHHHHHH
Confidence            477776653

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.90  E-value=0.052  Score=63.23  Aligned_cols=55  Identities=29%  Similarity=0.343  Sum_probs=45.5

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFIL  913 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~  913 (965)
                      |--+++.--+....+||.|||.-..|||||..+-        .|+.+|-.|.-||+..-|+-.
T Consensus       238 YsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~--------~A~Eafk~Lq~Afevig~~~k  292 (490)
T KOG0720|consen  238 YSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP--------RAEEAFKKLQVAFEVIGDSVK  292 (490)
T ss_pred             hhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh--------hHHHHHHHHHHHHHHhcchhh
Confidence            5556666666778999999999999999998742        578899999999998888766

>PRK14298 chaperone protein DnaJ; Provisional

Probab=93.85  E-value=0.034  Score=64.11  Aligned_cols=50  Identities=26%  Similarity=0.422  Sum_probs=34.2

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC  908 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~  908 (965)
                      |.-+++..-.+...||++|+|+.+.+|||+...  ..      |+.-|..||+||+++
T Consensus         8 y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~------~~~~f~~i~~Ay~vL   57 (377)
T PRK14298          8 YEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE--PD------AEEKFKEISEAYAVL   57 (377)
T ss_pred             HHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC--hh------HHHHHHHHHHHHHHh
Confidence            344556666677899999999999999999752  22      233455555555543

>PRK14287 chaperone protein DnaJ; Provisional

Probab=93.56  E-value=0.051  Score=62.61  Aligned_cols=60  Identities=22%  Similarity=0.341  Sum_probs=36.7

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRFFI  912 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~~~  912 (965)
                      |.-+++..-.+...||++|||+.+.+|||+...  ...++++. ....|.+|.+.-++..|--
T Consensus         7 y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~~~~~f~~i~~Ay~~L~d~~kR~~YD~   67 (371)
T PRK14287          7 YEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAYDTLSDPQKKAHYDQ   67 (371)
T ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCcHhHHHHHHh
Confidence            344555566677889999999999999999752  22233322 3444444444444444543

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=93.35  E-value=0.11  Score=54.16  Aligned_cols=60  Identities=18%  Similarity=0.203  Sum_probs=46.1

Q ss_pred             cchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhh-----cccc-ccc
Q 002109          859 LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFIL-----LCLE-GFN  920 (965)
Q Consensus       859 l~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~-----~~~~-~~~  920 (965)
                      -|++..+++.|+.....+|||++.+.  +...+-+|...=..||+||..++=.+.     |.|. |+.
T Consensus        15 ~iD~~~L~~~y~~Lq~~~HPD~f~~~--~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g~~   80 (173)
T PRK01773         15 QLDNALLSERYLALQKSLHPDNFANS--SAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTGEQ   80 (173)
T ss_pred             CCCHHHHHHHHHHHHHHhCcCcccCC--CHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccCCC
Confidence            37789999999999999999999864  445555776677888888877766554     6666 654

>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised

Probab=93.25  E-value=17  Score=40.79  Aligned_cols=8  Identities=25%  Similarity=-0.068  Sum_probs=3.1

Q ss_pred             CcchhhHH
Q 002109          437 EDVESSIA  444 (965)
Q Consensus       437 ~~~~~~~~  444 (965)
                      +|.+..+.
T Consensus        29 FDP~aLER   36 (276)
T PF12037_consen   29 FDPEALER   36 (276)
T ss_pred             CCcHHHHH
Confidence            33333433

This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.

>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]

Probab=93.18  E-value=1.6  Score=52.28  Aligned_cols=9  Identities=56%  Similarity=0.922  Sum_probs=3.9

Q ss_pred             CCcCCCCcc
Q 002109          124 SSVMEDPFG  132 (965)
Q Consensus       124 ss~~dDpF~  132 (965)
                      ++-.+-||.
T Consensus       234 ssElEQpfa  242 (940)
T KOG4661|consen  234 SSELEQPFA  242 (940)
T ss_pred             hhhhhhhhh
Confidence            334444444

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.10  E-value=0.078  Score=57.24  Aligned_cols=53  Identities=25%  Similarity=0.349  Sum_probs=38.5

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC  908 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~  908 (965)
                      |.-+++---.++..|+++|+|.-|.+||||++     .|++--|.-=|..|+.++.++
T Consensus        17 YevLGVer~a~~~eIrkAY~klal~~HPDk~~-----eed~~ea~~kFq~l~k~y~iL   69 (264)
T KOG0719|consen   17 YEVLGVERDATDKEIRKAYHKLALRLHPDKNH-----EEDKVEATEKFQQLQKAYQIL   69 (264)
T ss_pred             HHHhhhcccCCHHHHHHHHHHHHHHhCCCcch-----hhhHHHHHHHHHHHHHHHHHh
Confidence            34444444557799999999999999999985     245555777777777775544

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=92.98  E-value=24  Score=41.82  Aligned_cols=8  Identities=25%  Similarity=0.385  Sum_probs=3.2

Q ss_pred             chhhhhhc
Q 002109          926 SFLVYYFG  933 (965)
Q Consensus       926 ~~~~~~~~  933 (965)
                      ||-+-|+|
T Consensus       587 ~vQAavYg  594 (630)
T KOG0742|consen  587 SVQAAVYG  594 (630)
T ss_pred             HHHHHHhc
Confidence            44443333

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=92.89  E-value=0.094  Score=59.61  Aligned_cols=55  Identities=22%  Similarity=0.366  Sum_probs=38.7

Q ss_pred             ccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhh
Q 002109          852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRF  910 (965)
Q Consensus       852 ~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~  910 (965)
                      .-+.+.-.-+...|||+|||+-+.+||||...    ..+|++ ....|.+|.+.=++--|
T Consensus         8 ~il~v~~~As~~eikkayrkla~k~HpDkn~~----~~ekfkei~~AyevLsd~ekr~~y   63 (337)
T KOG0712|consen    8 DILGVSPDASEEEIKKAYRKLALKYHPDKNPD----AGEKFKEISQAYEVLSDPEKREIY   63 (337)
T ss_pred             eeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHHhcCHHHHHHH
Confidence            34455567788999999999999999999874    344554 45566666665444433

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=92.85  E-value=0.077  Score=53.89  Aligned_cols=48  Identities=25%  Similarity=0.328  Sum_probs=32.8

Q ss_pred             cccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109          855 SLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC  908 (965)
Q Consensus       855 ~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~  908 (965)
                      ++.--.+...||++|+|..+.+|||+....  ..    .|+.-|..+|+||.++
T Consensus        13 gv~~~as~~eik~ayrkla~~~HPD~~~~~--~~----~a~~~f~~i~~Ay~vL   60 (237)
T COG2214          13 GVPPNASLEEIKKAYRKLALKYHPDRNPGD--PK----VAEEKFKEINEAYEIL   60 (237)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hh----HHHHHHHHHHHHHHHh
Confidence            334444568899999999999999998742  11    4555555555555443

>PRK14289 chaperone protein DnaJ; Provisional

Probab=92.73  E-value=0.076  Score=61.41  Aligned_cols=55  Identities=24%  Similarity=0.228  Sum_probs=38.0

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFI  912 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~  912 (965)
                      |.-+++..-.+...||++|+|+.+.+||||.... .      -|+..|..|++||+.+.-..
T Consensus         8 y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~------~a~~~f~~i~~Ay~~L~d~~   62 (386)
T PRK14289          8 YEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD-K------EAEEKFKEAAEAYDVLSDPD   62 (386)
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-h------HHHHHHHHHHHHHHHhcCHH
Confidence            3444555556678899999999999999997631 1      14556677777776655443

>PRK07735 NADH dehydrogenase subunit C; Validated

Probab=92.71  E-value=5.1  Score=46.93  Aligned_cols=6  Identities=0%  Similarity=-0.501  Sum_probs=2.7

Q ss_pred             HHHHHh
Q 002109          903 VQQIYC  908 (965)
Q Consensus       903 ~a~~~~  908 (965)
                      +.|+-|
T Consensus       390 Ea~DMF  395 (430)
T PRK07735        390 EAYDLL  395 (430)
T ss_pred             HHHHHh
Confidence            444444

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=92.70  E-value=0.079  Score=56.68  Aligned_cols=54  Identities=20%  Similarity=0.301  Sum_probs=37.2

Q ss_pred             CCccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHH
Q 002109          850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKV  903 (965)
Q Consensus       850 ~W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~  903 (965)
                      .+.-+++..-.+...|||+||+..+++||||...-+.+.+..+-..+.+..|.+
T Consensus       101 PyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD  154 (230)
T KOG0721|consen  101 PYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTD  154 (230)
T ss_pred             cHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcc
Confidence            456677777788899999999999999999987533332222224455555543

>KOG2891 consensus Surface glycoprotein [General function prediction only]

Probab=92.50  E-value=20  Score=40.05  Aligned_cols=6  Identities=17%  Similarity=0.518  Sum_probs=2.4

Q ss_pred             cccccc
Q 002109          336 AEDVWL  341 (965)
Q Consensus       336 ~~dvwl  341 (965)
                      .|-|||
T Consensus       149 pdti~l  154 (445)
T KOG2891|consen  149 PDTIHL  154 (445)
T ss_pred             CCceee
Confidence            333443

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=92.43  E-value=0.097  Score=61.11  Aligned_cols=49  Identities=27%  Similarity=0.378  Sum_probs=34.2

Q ss_pred             CcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109          854 VSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC  908 (965)
Q Consensus       854 v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~  908 (965)
                      +++.---.+..||++|||.-|.+||||.+-   .++   -|..+|.+|+.|++++
T Consensus        14 L~v~~~a~d~eik~~YRklALq~HPDknpd---~ie---eat~~F~~i~aAYeVL   62 (508)
T KOG0717|consen   14 LGVERDADDDEIKKNYRKLALQYHPDKNPD---RIE---EATQQFQLIQAAYEVL   62 (508)
T ss_pred             hcccccCCHHHHHHHHHHHHHhhCCCCCCc---cHH---HHHHHHHHHHHHHHHh
Confidence            344444466889999999999999999653   222   2566777777776543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=92.41  E-value=0.21  Score=57.90  Aligned_cols=81  Identities=28%  Similarity=0.313  Sum_probs=56.7

Q ss_pred             cccccHHHHhhcccccc----CCCCCCccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHH------
Q 002109          829 GKEGNIRALLATMQYVL----WPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVF------  898 (965)
Q Consensus       829 gke~nIRaLLssL~~VL----W~~~~W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF------  898 (965)
                      -+.++||.+|...+.-|    |-+ -|+.+++.-+.....+||+|+|.-|.+||||...  .    ++-|+..|      
T Consensus       351 ~~s~e~r~~l~~A~~aLkkSkRkd-~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ag--s----q~eaE~kFkevgeA  423 (486)
T KOG0550|consen  351 EKDCEIRRTLREAQLALKKSKRKD-WYKILGISRNASDDEIKKAYRKLALVHHPDKNAG--S----QKEAEAKFKEVGEA  423 (486)
T ss_pred             ccccchHHHHHHHHHHHHHhhhhh-HHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcc--h----hHHHHHHHHHHHHH
Confidence            45578888887776544    321 1467777778888999999999999999999874  2    34455555      


Q ss_pred             -HHHHHHHHHhhhhhhccc
Q 002109          899 -DLLKVQQIYCRFFILLCL  916 (965)
Q Consensus       899 -~~Ln~a~~~~r~~~~~~~  916 (965)
                       .+|.+.-++-||-+.--|
T Consensus       424 y~il~d~~kr~r~dsg~dl  442 (486)
T KOG0550|consen  424 YTILSDPMKRVRFDSGQDL  442 (486)
T ss_pred             HHHhcCHHHHhhcccccch
Confidence             555556666677766444

>PHA02624 large T antigen; Provisional

Probab=92.22  E-value=0.11  Score=63.15  Aligned_cols=47  Identities=17%  Similarity=0.182  Sum_probs=37.7

Q ss_pred             hhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhh
Q 002109          861 TAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFF  911 (965)
Q Consensus       861 ~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~  911 (965)
                      +...||++|||+++.+||||.    .+.++--..+..|.+|.+...+.+|+
T Consensus        26 s~~eIKkAYRkLAkkyHPDKg----Gdeekfk~Ln~AYevL~d~~k~~r~~   72 (647)
T PHA02624         26 NLPLMRKAYLRKCKEYHPDKG----GDEEKMKRLNSLYKKLQEGVKSARQS   72 (647)
T ss_pred             CHHHHHHHHHHHHHHHCcCCC----CcHHHHHHHHHHHHHHhcHHHhhhcc
Confidence            668899999999999999993    34444444788888888888888883

>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]

Probab=89.82  E-value=6  Score=47.62  Aligned_cols=14  Identities=43%  Similarity=0.738  Sum_probs=11.3

Q ss_pred             cccchhhhhccCCC
Q 002109          748 IVDDLSSIFGAAGS  761 (965)
Q Consensus       748 i~DDlss~Fg~~~~  761 (965)
                      |-|-|.++|++.++
T Consensus       360 I~dkl~s~~~~~~~  373 (591)
T KOG2412|consen  360 IFDKLDSLFGGIPD  373 (591)
T ss_pred             HHHHHHHHhcCCCC
Confidence            66788899998874

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=89.36  E-value=0.29  Score=60.58  Aligned_cols=59  Identities=15%  Similarity=0.247  Sum_probs=36.2

Q ss_pred             ccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhhhh
Q 002109          852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRFFI  912 (965)
Q Consensus       852 ~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~~~  912 (965)
                      .-+++..-.+...||++||++++.+||||...  ...+++|. ....|.+|.+...+..|-.
T Consensus         6 eVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~--~eAeekFqeINEAYEVLSDP~KRa~YD~   65 (871)
T TIGR03835         6 EVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA--PDAASIFAEINEANDVLSNPKKRANYDK   65 (871)
T ss_pred             HhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCCHHHHHHHhh
Confidence            34455556678999999999999999999753  22222221 3444444444444444543

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]

Probab=89.22  E-value=7.7  Score=46.74  Aligned_cols=9  Identities=33%  Similarity=0.622  Sum_probs=3.7

Q ss_pred             CCCCCCCCC
Q 002109          351 QPTSAPPPS  359 (965)
Q Consensus       351 ~P~saPPpS  359 (965)
                      +|++.|-|+
T Consensus         3 ~pl~ep~p~   11 (591)
T KOG2412|consen    3 IPLEEPCPK   11 (591)
T ss_pred             CCCCCCCCC
Confidence            444444333

>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein

Probab=89.18  E-value=8.7  Score=46.28  Aligned_cols=15  Identities=13%  Similarity=0.426  Sum_probs=9.3

Q ss_pred             hHHhHHHHHHHHhcc
Q 002109          815 IAETLDVEIKRWAAG  829 (965)
Q Consensus       815 l~d~~~~ki~~W~~g  829 (965)
                      |.--|-.+|+.|..+
T Consensus       449 ~~~gv~~~i~~w~~~  463 (492)
T PF02029_consen  449 LKVGVASRINQWLTK  463 (492)
T ss_pred             hhhHHHHHHHHhhcC
Confidence            344556677777754

Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=89.11  E-value=0.45  Score=55.62  Aligned_cols=86  Identities=22%  Similarity=0.329  Sum_probs=52.0

Q ss_pred             HHHHhc-c-ccccHHHHhhccccccCCCCCCccCcccccchhhhHhHHhhhccccccCccccccCCC------HHHHHH-
Q 002109          823 IKRWAA-G-KEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGAN------LQQKYI-  893 (965)
Q Consensus       823 i~~W~~-g-ke~nIRaLLssL~~VLW~~~~W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~------~eqk~i-  893 (965)
                      |-.|.- | ---|||. |+-+-.=+|+  .|.-+++..--....||++||+...+.||||+..  ..      .|.+|+ 
T Consensus        74 ivgWl~i~~L~~~I~~-~k~~~~~~fD--PyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~--mvn~~rse~Ee~y~~  148 (610)
T COG5407          74 IVGWLVISYLISNIRT-LKIEYRRGFD--PYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPP--MVNELRSEYEEKYKT  148 (610)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHcCCC--hHHhhcccCCCcHHHHHHHHHhheeecChhhcCC--CChhHHHHHHHHHHH
Confidence            567763 1 0123333 2333334453  4556777777777999999999999999999985  33      344444 


Q ss_pred             HHHHHHHHHHHHHHhhhhhh
Q 002109          894 AEKVFDLLKVQQIYCRFFIL  913 (965)
Q Consensus       894 A~~vF~~Ln~a~~~~r~~~~  913 (965)
                      ..+.|-.|.+-..+.-|-..
T Consensus       149 ItkAY~~lTd~k~renyl~y  168 (610)
T COG5407         149 ITKAYGLLTDKKRRENYLNY  168 (610)
T ss_pred             HHHHHHhhhhHHHHHHHHhc
Confidence            45555555555445545433

>KOG3054 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.13  E-value=5.1  Score=43.94  Aligned_cols=10  Identities=50%  Similarity=0.826  Sum_probs=6.3

Q ss_pred             cccchhhhhc
Q 002109          748 IVDDLSSIFG  757 (965)
Q Consensus       748 i~DDlss~Fg  757 (965)
                      ..+||++-||
T Consensus       216 ~ledLas~f~  225 (299)
T KOG3054|consen  216 PLEDLASEFG  225 (299)
T ss_pred             eHHHHHHHhC
Confidence            3467777774

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=85.23  E-value=1e+02  Score=37.72  Aligned_cols=10  Identities=30%  Similarity=0.421  Sum_probs=4.8

Q ss_pred             CccccccCCh
Q 002109          764 GEFQDVEGET  773 (965)
Q Consensus       764 ~~f~~~~~e~  773 (965)
                      +.|+.+--|-
T Consensus       250 s~fdp~rrei  259 (514)
T TIGR03319       250 SGFDPVRREI  259 (514)
T ss_pred             cCCchHHHHH
Confidence            3566554333

>KOG3054 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.62  E-value=8.2  Score=42.42  Aligned_cols=14  Identities=36%  Similarity=0.188  Sum_probs=8.7

Q ss_pred             ccccccc------ccccccC
Q 002109          338 DVWLTVS------EIPLFTQ  351 (965)
Q Consensus       338 dvwltvs------~i~l~~~  351 (965)
                      .||+-|+      ||+|+..
T Consensus         4 ~v~vlVaa~llV~~i~l~l~   23 (299)
T KOG3054|consen    4 IVAVLVAAALLVAVILLFLW   23 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            4566655      7777654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=82.33  E-value=3.3  Score=47.65  Aligned_cols=54  Identities=24%  Similarity=0.294  Sum_probs=40.9

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC  908 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~  908 (965)
                      |+.+++----....|-|+|||+..+||||-++.    .|.|-.|++-|.-+--|.+++
T Consensus       397 YKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqd----EeEKKkAEKKFIDIAAAKEVL  450 (504)
T KOG0624|consen  397 YKILGVKRNASKQEITKAYRKLAQKWHPDNFQD----EEEKKKAEKKFIDIAAAKEVL  450 (504)
T ss_pred             HHHhhhcccccHHHHHHHHHHHHHhcCCccccC----HHHHHHHHHhhhhHHHHHHhh
Confidence            444555545555779999999999999999973    466778999998777776543

>PRK00106 hypothetical protein; Provisional

Probab=82.06  E-value=1.4e+02  Score=36.86  Aligned_cols=12  Identities=8%  Similarity=0.476  Sum_probs=6.1

Q ss_pred             ccHHHHhhcccc
Q 002109          832 GNIRALLATMQY  843 (965)
Q Consensus       832 ~nIRaLLssL~~  843 (965)
                      .+|-.||..|.+
T Consensus       332 ~e~~~~lg~l~~  343 (535)
T PRK00106        332 PDLIKIMGRLQF  343 (535)
T ss_pred             HHHHHHHHHHhh
Confidence            344455555544

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=81.40  E-value=1.4  Score=49.39  Aligned_cols=60  Identities=20%  Similarity=0.197  Sum_probs=45.6

Q ss_pred             ccCCCCCCccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhh
Q 002109          844 VLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFF  911 (965)
Q Consensus       844 VLW~~~~W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~  911 (965)
                      ++|...-|.-+++..=-+...||++|++..-..|||-....        .|+..|..|.+||+++.-.
T Consensus        39 ~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~--------~a~~kF~eI~~AYEiLsd~   98 (288)
T KOG0715|consen   39 IISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK--------EASKKFKEISEAYEILSDE   98 (288)
T ss_pred             cCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc--------chhhHHHHHHHHHHHhcCH
Confidence            33444345556666666789999999999999999998743        7788899999998876533

>PRK12704 phosphodiesterase; Provisional

Probab=80.94  E-value=1.5e+02  Score=36.43  Aligned_cols=11  Identities=18%  Similarity=0.374  Sum_probs=4.9

Q ss_pred             ccccccCChHH
Q 002109          765 EFQDVEGETEE  775 (965)
Q Consensus       765 ~f~~~~~e~~~  775 (965)
                      .|+++.-|...
T Consensus       257 ~~~~~rre~a~  267 (520)
T PRK12704        257 GFDPIRREIAR  267 (520)
T ss_pred             cCChhhHHHHH
Confidence            45554433333

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=80.92  E-value=1.3e+02  Score=36.01  Aligned_cols=6  Identities=33%  Similarity=0.284  Sum_probs=2.5

Q ss_pred             cccccc
Q 002109          914 LCLEGF  919 (965)
Q Consensus       914 ~~~~~~  919 (965)
                      .+|||+
T Consensus       512 FpLPGe  517 (630)
T KOG0742|consen  512 FPLPGE  517 (630)
T ss_pred             cCCCCh
Confidence            344443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	965
3ag7_A	106	An Auxilin-Like J-Domain Containing Protein, Jac1 J		3e-26
1n4c_A	182	Nmr Structure Of The J-Domain And Clathrin Substrat		3e-15
1xi5_J	114	Clathrin D6 Coat With Auxilin J-Domain Length = 114		7e-14
2qwn_B	94	Crystal Structure Of Disulfide-Bond-Crosslinked Com		6e-13
2qwo_B	92	Crystal Structure Of Disulfide-Bond-Crosslinked Com		8e-13
1nz6_A	101	Crystal Structure Of Auxilin J-Domain Length = 101		3e-12

>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1 J-Domain Length = 106

Iteration: 1
 Score =  117 bits (293), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/86 (56%), Positives = 71/86 (82%)
Query: 817 ETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCI 876
           + +D +I++W++GK GNIR+LL+T+QY+LW  SGW+PV L D+I   AV+K Y++A L +
Sbjct: 9   KNIDAKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALLIL 68
Query: 877 HPDKVQQKGANLQQKYIAEKVFDLLK 902
           HPDK+QQKGA+  QKY+AEKVF+LL+
Sbjct: 69  HPDKLQQKGASANQKYMAEKVFELLQ 94

>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate Binding Domain Of Bovine Auxilin Length = 182

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 801 RDLQAQRDQAE--RHRIAETLDVE---IKRWAAGKEGNIRALLATMQYVLWP-ESGWQPV 854
           +D +  R  AE  +  +A+ +D E   I  W  GKE NIRALL+TM  VLW  E+ W+PV
Sbjct: 64  KDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPV 123
Query: 855 SLTDLITAAAVKKCYRKATLCIHPDKV 881
            + DL+T   VKK YRKA L +HPDK 
Sbjct: 124 GMADLVTPEQVKKVYRKAVLVVHPDKA 150

>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain Length = 114

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 809 QAERHRIAETLDVE---IKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAA 864
           +  +  +A+ +D E   I  W  GKE NIRALL+TM  VLW  E+ W+PV + DL+T   
Sbjct: 6   EMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQ 65
Query: 865 VKKCYRKATLCIHPDK 880
           VKK YRKA L +HPDK
Sbjct: 66  VKKVYRKAVLVVHPDK 81

>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 94

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 821 VEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAAVKKCYRKATLCIHPD 879
           ++I  W  GKE NIRALL+TM  VLW  E+ W+PV + DL+T   VKK YRKA L +HP 
Sbjct: 6   LKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPC 65
Query: 880 K 880
           K
Sbjct: 66  K 66

>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi Form #1 Length = 92

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 821 VEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAAVKKCYRKATLCIHPD 879
           ++I  W  GKE NIRALL+TM  VLW  E+ W+PV + DL+T   VKK YRKA L +HP 
Sbjct: 5   LKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPC 64
Query: 880 K 880
           K
Sbjct: 65  K 65

>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain Length = 101

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 821 VEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAAVKKCYRKATLCIHPD 879
           ++I  W  GKE NIRALL+T   VLW  E+ W+PV   DL+T   VKK YRKA L +HPD
Sbjct: 8   LKILEWIEGKERNIRALLSTXHTVLWAGETKWKPVGXADLVTPEQVKKVYRKAVLVVHPD 67
Query: 880 K 880
           K
Sbjct: 68  K 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	965
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	1e-34
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	3e-31
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	5e-29
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	2e-21
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	5e-19
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	4e-17
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	2e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-10
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-08
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-08
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-08
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-07
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-04
1cii_A	602	Colicin IA; bacteriocin, ION channel formation, tr	5e-07
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	1e-06
2es4_D	332	Lipase chaperone; protein-protein complex, steric	1e-05
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	2e-05
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	2e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	6e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-04
2dg7_A	195	Putative transcriptional regulator; helix-turn-hel	3e-05
1jad_A	251	PLC-beta, phospholipase C beta; alpha helical coil	4e-05
3iyk_A	526	VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongu	4e-05
3iyk_A	526	VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongu	5e-05
3iyk_A	526	VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongu	1e-04
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	1e-04
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	1e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-04
4f61_I	240	Stathmin-like domain R4; alpha-tubulin, beta-tubul	1e-04
4f61_I	240	Stathmin-like domain R4; alpha-tubulin, beta-tubul	5e-04
2rae_A	207	Transcriptional regulator, ACRR family protein; TE	2e-04
3dmq_A	968	RNA polymerase-associated protein RAPA; SWF2/SNF2,	3e-04
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	4e-04
2dg6_A	222	Putative transcriptional regulator; winged-helix m	7e-04
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	8e-04

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score =  127 bits (319), Expect = 1e-34
 Identities = 49/91 (53%), Positives = 71/91 (78%)

Query: 812 RHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRK 871
                + +D +I++W++GK GNIR+LL+T+QY+LW  SGW+PV L D+I   AV+K Y++
Sbjct: 4   GSEEIKNIDAKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQR 63

Query: 872 ATLCIHPDKVQQKGANLQQKYIAEKVFDLLK 902
           A L +HPDK+QQKGA+  QKY+AEKVF+LL+
Sbjct: 64  ALLILHPDKLQQKGASANQKYMAEKVFELLQ 94

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score =  119 bits (300), Expect = 3e-31
 Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 6/169 (3%)

Query: 735 ASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRRARLERHQRTQERAAKA 794
            S       S+     + +  F +      E +       E ++   +       +   A
Sbjct: 4   GSPEFSMPHSSPQNRPNYNVSFSSMPGGQNE-RGKAAANLEGKQKAADFEDLLSGQGFNA 62

Query: 795 LAEKNERDLQAQRDQAERHRIAETLDVEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQP 853
             +K      A+  + E  +  +   ++I  W  GKE NIRALL+TM  VLW  E+ W+P
Sbjct: 63  HKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKP 122

Query: 854 VSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLK 902
           V + DL+T   VKK YRKA L +HPDK   +      +  A+ +F  L 
Sbjct: 123 VGMADLVTPEQVKKVYRKAVLVVHPDKATGQ----PYEQYAKMIFMELN 167

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score =  110 bits (275), Expect = 5e-29
 Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 5/87 (5%)

Query: 817 ETLDVEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAAVKKCYRKATLC 875
           +   ++I  W  GKE NIRALL+TM  VLW  E+ W+PV + DL+T   VKK YRKA L 
Sbjct: 1   DPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLV 60

Query: 876 IHPDKVQQKGANLQQKYIAEKVFDLLK 902
           +HP K   +      +  A+ +F  L 
Sbjct: 61  VHPCKATGQ----PYEQYAKMIFMELN 83

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 99.5 bits (247), Expect = 2e-21
 Identities = 44/276 (15%), Positives = 90/276 (32%), Gaps = 13/276 (4%)

Query: 411 QIDELEDFAMSRSWNNVNEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRE 470
           ++    D A +    +V ++              A ++    +    +    R A    E
Sbjct: 548 ELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFE 607

Query: 471 RESFKAARSRESVQ-------PDREERATQQDAQERLDREMQQREKGEEQRRLERERERE 523
                        +       P      +  D Q     + + R+  +   +L  E    
Sbjct: 608 MSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTN 667

Query: 524 REEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKAN 583
            +E   + +    E+E    +E+++   +   E+A +E  E  A    +++   A  +A 
Sbjct: 668 SQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAE 727

Query: 584 AAA------RERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARER 637
           + A       E +   A  +AQA A E  A   R +  R       RA  E    +A++ 
Sbjct: 728 SRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQL 787

Query: 638 ASVARTEAEALQRAERAAVQRAASEARERAAAEARE 673
           A+V   + + +  A      R  + A      +  +
Sbjct: 788 ANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQ 823

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 91.8 bits (227), Expect = 5e-19
 Identities = 41/210 (19%), Positives = 71/210 (33%), Gaps = 1/210 (0%)

Query: 452 KEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGE 511
              + +A  +    +      S          Q  R+           +    Q+     
Sbjct: 616 GTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKH 675

Query: 512 EQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEAR 571
           E +RLE+E  R R E+++   + E EK R   +E E            +   E  A  AR
Sbjct: 676 EAQRLEQE-ARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAAR 734

Query: 572 LKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEARE 631
           ++ E + +     A     E  A      + RE     AR + E   ++A++ AN EA++
Sbjct: 735 IEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKK 794

Query: 632 KEARERASVARTEAEALQRAERAAVQRAAS 661
            +    A    T  +         V+   S
Sbjct: 795 FKEMTEALGPGTIRDLAVAGPEMQVKLLQS 824

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 85.6 bits (211), Expect = 4e-17
 Identities = 40/203 (19%), Positives = 66/203 (32%), Gaps = 14/203 (6%)

Query: 494 QDAQERLDREMQQREKGEEQRRLERERER----EREEKEREKKRIEKEKERAREIEKERE 549
            +  E    +     K  +Q    +        + +  E   +R     +R+ ++  E  
Sbjct: 606 FEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEIT 665

Query: 550 KARQAVERATREARERAAAEARLKAER--AAVDKANAAARERAERAAVQRAQAEARERAA 607
              Q  E A +   +R   EAR + ER           AR+            E+   A 
Sbjct: 666 TNSQ--EAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAK 723

Query: 608 AEARERAERAAAEARE-----RANAEAREKEARERASVARTEAEALQRAERAAVQRAASE 662
           AEA  RAE A  E        +  A+A   E        +   E      RA ++   S+
Sbjct: 724 AEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSK 783

Query: 663 ARERAAAEARERAAAAARANQNQ 685
           A++ A  EA ++      A    
Sbjct: 784 AQQLANVEA-KKFKEMTEALGPG 805

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 73.7 bits (180), Expect = 2e-13
 Identities = 32/195 (16%), Positives = 69/195 (35%), Gaps = 11/195 (5%)

Query: 503 EMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREA 562
                + G +   L + R++    +      +       + +E   ++ R A++R+ + A
Sbjct: 606 FEMSEDTGPDGTLLPKARDQAVFPQNG----LVVSSVDVQSVEPVDQRTRDALQRSVQLA 661

Query: 563 RERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAE--ARERAERAAAE 620
            E         A+     +A    +E   R   Q+   ++    A +      A   A E
Sbjct: 662 IEITTNSQEAAAKH----EAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVE 717

Query: 621 ARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEA-RERAAAAA 679
           +   A AEA  +    R     +  +A  +A+  A++  A   R +   E     A A  
Sbjct: 718 STGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQL 777

Query: 680 RANQNQQKNDNDLES 694
               ++ +   ++E+
Sbjct: 778 ELEVSKAQQLANVEA 792

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 81.4 bits (201), Expect = 8e-16
 Identities = 49/262 (18%), Positives = 107/262 (40%), Gaps = 5/262 (1%)

Query: 445  AASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREM 504
                   KE   +AEA+ +  ++   +   +    +E +Q + E  A  ++ + RL  + 
Sbjct: 863  DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922

Query: 505  QQREK--GEEQRRLERERER---EREEKEREKKRIEKEKERAREIEKEREKARQAVERAT 559
            Q+ E+   E + R+E E ER    + EK++ ++++   +E+  E E  R+K +     A 
Sbjct: 923  QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982

Query: 560  REARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAA 619
             + ++       ++ +   + K      ER        A+ E + +   + + + E   +
Sbjct: 983  GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS 1042

Query: 620  EARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAA 679
            E   R   E + ++  E+         +    + A +Q   +E + + A +  E  AA A
Sbjct: 1043 ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102

Query: 680  RANQNQQKNDNDLESFFSMSSR 701
            R      + +N L+    + S 
Sbjct: 1103 RLEDETSQKNNALKKIRELESH 1124

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 79.9 bits (197), Expect = 3e-15
 Identities = 61/376 (16%), Positives = 124/376 (32%), Gaps = 43/376 (11%)

Query: 447  SAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQ 506
                 +E M   + + +  KE +++   +     +      EE+   Q  + + + E+  
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ-EKLQAETELYA 909

Query: 507  REKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERA 566
              +    R   +++E E    E  + RIE+E+ER+++++ E++K +Q +     +  E  
Sbjct: 910  EAEEMRVRLAAKKQELEEILHE-MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968

Query: 567  AAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERAN 626
            AA  +L+ E+   D       +       Q  +     +   E         AE  E+A 
Sbjct: 969  AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028

Query: 627  AEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQ 686
               + K   E      +E E   + E  + Q       E+   +    ++         Q
Sbjct: 1029 NLTKLKNKHES---MISELEVRLKKEEKSRQEL-----EKIKRKLEGESSDLHEQIAELQ 1080

Query: 687  KNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPARRTSVGASSNMRKASSTT 746
                +L++  +       A   R     S  ++  K                  K     
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALK------------------KIRELE 1122

Query: 747  NIVDDLSSIFGAAGSSAGEFQDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQ 806
            + + DL                 + E+E+  R + E+ +R      +AL  + E  L   
Sbjct: 1123 SHISDLQE---------------DLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTT 1167

Query: 807  RDQAERHRIAETLDVE 822
              Q E        D +
Sbjct: 1168 ATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 70.2 bits (172), Expect = 3e-12
 Identities = 40/256 (15%), Positives = 89/256 (34%), Gaps = 18/256 (7%)

Query: 443  IAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDR 502
                 +  ++    + + +    +E  E E      +R+ +Q    E+ T     ++++ 
Sbjct: 938  EEEERSQQLQAEKKKMQQQMLDLEEQLEEE----EAARQKLQ---LEKVTADGKIKKMED 990

Query: 503  EMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAV----ERA 558
            ++   E  ++  +L +ER+   E        + +E+E+A+ + K + K    +     R 
Sbjct: 991  DILIME--DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRL 1048

Query: 559  TREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAA 618
             +E + R   E   +         +    E   + A  +AQ   +E     A  R E   
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDET 1108

Query: 619  AEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAA 678
            ++ +  A  + RE E+         E+E   +A R   ++   +  E      +      
Sbjct: 1109 SQ-KNNALKKIRELESHISDLQEDLESE---KAARNKAEKQKRDLSEE-LEALKTELEDT 1163

Query: 679  ARANQNQQKNDNDLES 694
                  QQ+       
Sbjct: 1164 LDTTATQQELRGSDYK 1179

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 67.9 bits (166), Expect = 1e-11
 Identities = 39/251 (15%), Positives = 91/251 (36%), Gaps = 5/251 (1%)

Query: 445  AASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREM 504
                A  +E   R  AK +  +E+      +     E  Q  + E+   Q     L+ ++
Sbjct: 905  TELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQL 964

Query: 505  QQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARE 564
            ++ E    +++L+ E+     + ++ +  I   +++  ++ KER+   + V   T    E
Sbjct: 965  EEEEA--ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022

Query: 565  RAAAEARLKAERAAVDKANAAARERAERAAVQRAQAE-ARERAAAEARERAERAAAEARE 623
                   L   +   +   +    R ++    R + E  + +   E+ +  E+ A    +
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082

Query: 624  RANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQ 683
             A  +A+  +  E    A    E    +++    +   E      ++ +E   +   A  
Sbjct: 1083 IAELKAQLAKKEEELQAALARLEDET-SQKNNALKKIRELESH-ISDLQEDLESEKAARN 1140

Query: 684  NQQKNDNDLES 694
              +K   DL  
Sbjct: 1141 KAEKQKRDLSE 1151

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 62.9 bits (153), Expect = 5e-10
 Identities = 35/223 (15%), Positives = 80/223 (35%), Gaps = 10/223 (4%)

Query: 444  AAASAAAMKEAMDRAEAKFRHAK-EMRERESFKAARSRESVQPDREERATQQDAQERLDR 502
              A+   ++     A+ K +  + ++   E      ++E    +        +  E    
Sbjct: 967  EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE--- 1023

Query: 503  EMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREA 562
            E + +   + + + E          ++E+K  ++ ++  R++E E     + +     + 
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083

Query: 563  RERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEAR 622
             E  A  A+ + E  A     A AR   E +    A  + RE   +   +  E   +E  
Sbjct: 1084 AELKAQLAKKEEELQA-----ALARLEDETSQKNNALKKIRE-LESHISDLQEDLESEKA 1137

Query: 623  ERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARE 665
             R  AE ++++  E     +TE E          +   S+ ++
Sbjct: 1138 ARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.0 bits (135), Expect = 6e-08
 Identities = 34/201 (16%), Positives = 80/201 (39%), Gaps = 18/201 (8%)

Query: 451  MKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREER-------------ATQQDAQ 497
            M++ +   E +  + K  +ER+  +   S  +     EE              +   + +
Sbjct: 988  MEDDILIMEDQ--NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE 1045

Query: 498  ERLDREMQQREKGEEQ-RRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVE 556
             RL +E + R++ E+  R+LE E     E+    + +I + K +  + E+E + A   +E
Sbjct: 1046 VRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLE 1105

Query: 557  RATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAER 616
              T +          L++  + + +   +  E+A R   ++ + +  E   A   E  + 
Sbjct: 1106 DETSQKNNALKKIRELESHISDLQEDLES--EKAARNKAEKQKRDLSEELEALKTELEDT 1163

Query: 617  AAAEARERANAEAREKEARER 637
                A ++    +  K+  ++
Sbjct: 1164 LDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.4 bits (118), Expect = 6e-06
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 6/147 (4%)

Query: 437  EDVESSIAAASAAAM--KEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQ 494
             ++E  +     +    ++   + E +     E       + A  +  +    EE     
Sbjct: 1042 SELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAAL 1101

Query: 495  DAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQA 554
               E    +     K  + R LE      +E+ E EK    K +++ R++ +E E  +  
Sbjct: 1102 ARLEDETSQKNNALK--KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE 1159

Query: 555  VERATREARERAAAEARLKAERAAVDK 581
            +E            E R    +   DK
Sbjct: 1160 LEDTLDT--TATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 25/182 (13%), Positives = 63/182 (34%), Gaps = 10/182 (5%)

Query: 440  ESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQER 499
            E  +     + +   +   E K ++  +++ +     +     ++ + + R   +  + +
Sbjct: 1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064

Query: 500  LDREMQQ-----REKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQA 554
            L+ E         E   +   L+ +  ++ EE +    R+E E  +     K+  +    
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH 1124

Query: 555  VERATREARERAAAEARLKAERAAVD---KANAAARERAERAAVQRAQAEARERAAAEAR 611
            +     +    +   AR KAE+   D   +  A   E  +       Q E R     +  
Sbjct: 1125 ISDLQEDLE--SEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

Query: 612  ER 613
            ++
Sbjct: 1183 DK 1184

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 70.9 bits (174), Expect = 1e-12
 Identities = 38/263 (14%), Positives = 83/263 (31%), Gaps = 24/263 (9%)

Query: 448  AAAMKEAMDRAEAKFRHAKEMRER-----ESFKAARSRESVQPDREERAT---QQDAQER 499
            AA + +   R     +  + MR+         +    R   Q    E  +   Q+  +  
Sbjct: 818  AAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGW 877

Query: 500  LDREMQQREKGEEQRRLERER----EREREEKEREKKRIEKEKERAREIEKEREKARQAV 555
            L R    R            R    +RE ++ + E + +E+ K+    +E +  + ++ +
Sbjct: 878  LARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKI 937

Query: 556  ERATREARERAAA----EARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEAR 611
            +   +E +         E     E   +       R   E A     +  + +   A+ R
Sbjct: 938  DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR 997

Query: 612  ERAERAAAEARE--------RANAEAREKEARERASVARTEAEALQRAERAAVQRAASEA 663
            +   +   E +         +   E    E +E+ ++ +TE E L R      +      
Sbjct: 998  KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETM 1057

Query: 664  RERAAAEARERAAAAARANQNQQ 686
             ++   E ++            Q
Sbjct: 1058 EKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 63.6 bits (155), Expect = 3e-10
 Identities = 37/258 (14%), Positives = 72/258 (27%), Gaps = 13/258 (5%)

Query: 448  AAAMKEAMDRAEAKFRHAKEMRERESF----KAARSRESVQPDREERATQQDAQERLDRE 503
            AA   +   R      +A  +R   +     K  R     +  +  R      Q  L R 
Sbjct: 793  AAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALL-RG 851

Query: 504  MQQREKGEEQRRLERER---EREREEKEREKKRIEKEKERAREIEKEREKARQAVERATR 560
               R K +   R  +     +  R    R       +     +    R  A++ +++   
Sbjct: 852  YLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKI 911

Query: 561  EARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEA----RERAER 616
            EAR     +         + +      E+ +       +    E   +      R   ER
Sbjct: 912  EARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVER 971

Query: 617  AAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAA 676
                  E  NA  R    +E  +  R E    Q  E+  ++  A + +        E   
Sbjct: 972  LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT-EKKTIEEWADKYKHETEQLVSELKE 1030

Query: 677  AAARANQNQQKNDNDLES 694
                    +++ +  +  
Sbjct: 1031 QNTLLKTEKEELNRRIHD 1048

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 3/132 (2%)

Query: 446  ASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQ 505
                 ++        K R   E       +A  +   V   +EE A  +    +   E +
Sbjct: 949  EKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008

Query: 506  QREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARER 565
              E+  ++ + E E+     +++    + EKE+   R I  + ++  + +E+   E  E 
Sbjct: 1009 TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN-RRIHDQAKEITETMEKKLVE--ET 1065

Query: 566  AAAEARLKAERA 577
               E  L  ER 
Sbjct: 1066 KQLELDLNDERL 1077

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.4 bits (161), Expect = 3e-11
 Identities = 56/436 (12%), Positives = 113/436 (25%), Gaps = 123/436 (28%)

Query: 595 VQRAQAEARERAAAEARER-----AERAAAEARERANAEAREKEARERA----------S 639
           +   Q E  ++   E               E R+ +       E R+R           +
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 640 VARTEAEALQRAERAAVQRAASEARERAAAEARER---------------AAAAARANQN 684
           V+R +           +++A  E R         +               A     + + 
Sbjct: 131 VSRLQ-------PYLKLRQALLELR-------PAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 685 QQKNDNDLESF---FSMSSRPSSAPRPRANTS---DSLFDSQSKGGPEPARRTSVGAS-- 736
           Q K D  +  F       + P +            D  + S+S        R     +  
Sbjct: 177 QCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 737 SNMRKASSTTN---IVDDLSS--IFGAAG---------SSAGEFQDVEGETEERRRARLE 782
             + K+    N   ++ ++ +   + A                   +   T       L+
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT--TTHISLD 292

Query: 783 RHQR--TQERA----AKALAEKNERDLQAQRDQAERHR------IAETLDVEIKRWAAGK 830
            H    T +       K L  + + DL     +           IAE++   +  W   K
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQ-DL---PREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 831 EGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQ 890
             N   L   ++            SL  L   A  +K + +  L + P            
Sbjct: 349 HVNCDKLTTIIE-----------SSLNVL-EPAEYRKMFDR--LSVFPPSAH-------- 386

Query: 891 KYIAEKVFDLL-------KVQQIYCRFFILLCLEGFNLTMQDSFLVYYFGC-FTFCCQFD 942
             I   +  L+        V  +  +      +E           +           + +
Sbjct: 387 --IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP----KESTISIPSIYLELKVKLE 440

Query: 943 DKLLLHANMNSEKYAI 958
           ++  LH ++  + Y I
Sbjct: 441 NEYALHRSI-VDHYNI 455

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 63.1 bits (154), Expect = 3e-10
 Identities = 31/237 (13%), Positives = 76/237 (32%), Gaps = 7/237 (2%)

Query: 457 RAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRL 516
           RA  + +     R  E  +    +++    R+   + +  Q       ++ +K E+  + 
Sbjct: 754 RASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQ-SFMNAHKEYKKTEKPPKG 812

Query: 517 -EREREREREEKEREKKRIEKEKE---RAREIEKEREKARQAVERATREARERAAAEARL 572
            E           + K R+ K +     A     E +    A+E+A +E  E    E + 
Sbjct: 813 QEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKR 872

Query: 573 KAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREK 632
           + + A + +     R   +       ++             A +A  +  E  + E +  
Sbjct: 873 QKKIAVLLQ--KYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSL 930

Query: 633 EARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKND 689
           E +  + +    A+  +       +    +    A      +++A    N    + +
Sbjct: 931 EGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELE 987

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 55.2 bits (132), Expect = 1e-08
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 15/92 (16%)

Query: 512 EQRRLEREREREREEKEREKKRI-EKEKERAREIEKEREKARQAVERATREARERAAAEA 570
           +  RL +E E  R+ +E ++KR+ E +       ++ REKA++ +E   +   E+     
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ----- 130

Query: 571 RLKAERAAVDKANAAARERAERAAVQRAQAEA 602
                   V+K     R  A++A  Q+  A+ 
Sbjct: 131 --------VEKNKINNRI-ADKAFYQQPDADI 153

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 54.8 bits (131), Expect = 1e-08
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 511 EEQRRLEREREREREEKEREKKRI-EKEKERAREIEKEREKARQAVE---RATREARERA 566
            ++   E E  R+   +E ++KR+ E +       ++ REKA++ +E   +   E  E+ 
Sbjct: 77  ADRLTQEPESIRKW--REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134

Query: 567 AAEARLKAERAAVDKANA 584
               R  A++A   + +A
Sbjct: 135 KINNR-IADKAFYQQPDA 151

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 53.2 bits (127), Expect = 5e-08
 Identities = 15/79 (18%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 499 RLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAR-EIEKEREKARQAVER 557
           + DR  Q+ E   + R  +R+R +E +   +  +  ++ +E+A+ ++E+  ++  + VE+
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDAASKVME--QEWREKAKKDLEEWNQRQSEQVEK 133

Query: 558 ATREARERAAAEARLKAER 576
                R    A+     + 
Sbjct: 134 NKINNRI---ADKAFYQQP 149

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 51.3 bits (122), Expect = 2e-07
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 484 QPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKERE------KKRIEKE 537
           Q DR  +  +   + R ++  + +E     +    +  RE+ +K+ E       +++EK 
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDAASKV-MEQEWREKAKKDLEEWNQRQSEQVEKN 134

Query: 538 KERAREIEKEREKARQA 554
           K   R  +K   +   A
Sbjct: 135 KINNRIADKAFYQQPDA 151

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 530 EKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARER 589
           +  R+ +E E  R+  +E ++ R   E     A +    E R KA++   +      + +
Sbjct: 76  QADRLTQEPESIRK-WREEQRKRLQ-ELD--AASKVMEQEWREKAKKDLEE----WNQRQ 127

Query: 590 AERAAVQRAQAEARERAAAEARERAE 615
           +E+  V++ +   R    A  ++   
Sbjct: 128 SEQ--VEKNKINNRIADKAFYQQPDA 151

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 598 AQAEARERAAAEA-RERAERAAAEARER-ANAEAREKEARERASVARTEAEALQRAERAA 655
           AQA+ R     E+ R+  E      +E  A ++  E+E RE+A   + + E   + +   
Sbjct: 75  AQAD-RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKA---KKDLEEWNQRQSEQ 130

Query: 656 VQRAASEARERAAAEARER 674
           V++     R    A  ++ 
Sbjct: 131 VEKNKINNRIADKAFYQQP 149

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 607 AAEARERAE-RAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARE 665
           A   R   E  +  + RE      +E +A  +        +A +  E    +++  E  E
Sbjct: 75  AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS--EQVE 132

Query: 666 RAAAEARERAAA 677
           +     R    A
Sbjct: 133 KNKINNRIADKA 144

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 567 AAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERAN 626
           A   RL  E  ++       R+  E    QR + +  + A+    +     A +  E  N
Sbjct: 75  AQADRLTQEPESI-------RKWREE---QRKRLQELDAASKVMEQEWREKAKKDLEEWN 124

Query: 627 AEAREKEARERASVARTEAEALQRAERAAV 656
               E+  + + +    +    Q+ +   +
Sbjct: 125 QRQSEQVEKNKINNRIADKAFYQQPDADII 154

>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 Length = 602

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 51/443 (11%), Positives = 118/443 (26%), Gaps = 15/443 (3%)

Query: 384 YSSFSNSPQCTHSPKSTRAGTRSSAASQIDELEDFAMSRSWNNVNEYGEV---------- 433
           +SSF N      +     + TRS    +  E+  +  + S        +           
Sbjct: 24  WSSFGNKTIWGGNEWVDDSPTRSDIEKRDKEITAYKNTLSAQQKENENKRTEAGKRLSAA 83

Query: 434 -PSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERAT 492
             + E  E+++    A     A    +       E+RE          ++++   E R  
Sbjct: 84  IAAREKDENTLKTLRAGNADAADITRQEFRLLQAELREYGFRTEIAGYDALRLHTESRML 143

Query: 493 QQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKAR 552
             DA        + R   E+  + +++ +   ++        E+ K        E EK  
Sbjct: 144 FADADSLRISPREARSLIEQAEKRQKDAQNADKKAADMLAEYERRKGILDTRLSELEKNG 203

Query: 553 QAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARE 612
            A        + R   +        +  +   ++   +   A        ++    +   
Sbjct: 204 GAALAVLDAQQARLLGQQTRNDRAISEARNKLSSVTESLNTARNALTRAEQQLTQQKNTP 263

Query: 613 RAERAAAE----ARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAA 668
             +   +      R   N           A   +    A+           +    +   
Sbjct: 264 DGKTIVSPEKFPGRSSTNDSIVVSGDPRFAGTIKITTSAVIDNRANLNYLLSHSGLDYKR 323

Query: 669 AEARERAAAAARANQNQQKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPA 728
               +R        +  +K  N   + +    +     R +  +++S  +S         
Sbjct: 324 NILNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSART 383

Query: 729 RRTSVGASSNMRKASSTTNIVDDLSSIFGAAGSSAGEFQDVEGETEERRRARLERHQRTQ 788
                   +         NI + LS I         +  +++   +            ++
Sbjct: 384 NEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDELKATKDAINFTTEFLKSVSE 443

Query: 789 ERAAKALAEKNERDLQAQRDQAE 811
           +  AKA     E   QA+  +  
Sbjct: 444 KYGAKAEQLAREMAGQAKGKKIR 466

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 24/209 (11%), Positives = 66/209 (31%), Gaps = 31/209 (14%)

Query: 516 LERERERE------------------REEKEREKKRIEKEKERAREIEKEREKARQAVER 557
           +E  RE+                   +   +++     ++   + E  +    A +  ++
Sbjct: 754 IEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKK 813

Query: 558 ATREARERAAAEAR------------LKAERAAVDKANAAARERAERAAVQRAQAEARER 605
             +  + +  +E              +K E              +  +A+++A+ E  E 
Sbjct: 814 TEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEA 873

Query: 606 AAAEARERAERAAAEARERANAEAREKEARERA-SVARTEAEALQRAERAAVQRAASEAR 664
              E + + + A    +     +  E  A  ++  +   E      A +A ++   +   
Sbjct: 874 LRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDG 933

Query: 665 ERAAAEARERAAAAARANQNQQKNDNDLE 693
           E  + E +  +   +   Q  + N N + 
Sbjct: 934 ECQSLEGQSNSDLLSILAQLTELNYNGVP 962

>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1 Length = 332

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 48/319 (15%), Positives = 105/319 (32%), Gaps = 12/319 (3%)

Query: 354 SAPPPSRPPPPRPTRVSKLETGNARKKANEYSSFSNSPQCTHSPKSTRAGTRSSAASQID 413
                  P  P P     +  G A       S  + +     +          +    + 
Sbjct: 15  HIEGRHMPAAPSPAPAGAVAGGPAAGVPAAASGAAEAAMPLPAALPGALAGSHAPRLPLA 74

Query: 414 ELEDFAMSRSWNNVNEY-----GEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEM 468
                A +R+     +Y     GE+  P  +++ +    AA +  +  +AEA     +  
Sbjct: 75  AGGRLARTRAVREFFDYCLTAQGELT-PAALDALVRREIAAQLDGSPAQAEALGVWRRYR 133

Query: 469 RERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKE 528
              ++        +V  D+ + A  Q A ++      +      +     E+ R+R + E
Sbjct: 134 AYFDALAQLPGDGAVLGDKLDPAAMQLALDQRAALADRTLGEWAEPFFGDEQRRQRHDLE 193

Query: 529 REKKRIEK---EKERAREIEKEREK---ARQAVERATREARERAAAEARLKAERAAVDKA 582
           R +   +     +++A  +     +     +A + A    ++     A L+   A  D+ 
Sbjct: 194 RIRIANDTTLSPEQKAARLAALDAQLTPDERAQQAALHAQQDAVTKIADLQKAGATPDQM 253

Query: 583 NAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVAR 642
            A   +     A  RA    ++  A + R +A  A  +         ++++AR      +
Sbjct: 254 RAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQ 313

Query: 643 TEAEALQRAERAAVQRAAS 661
           T     +    A++ R A 
Sbjct: 314 TFTAPGEAIRAASLDRGAG 332

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 47.3 bits (111), Expect = 2e-05
 Identities = 17/118 (14%), Positives = 46/118 (38%), Gaps = 8/118 (6%)

Query: 459 EAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQ--RRL 516
                   +    +  +    R   +  +       + Q + ++ M+Q+E+  ++  ++L
Sbjct: 472 TDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQL 531

Query: 517 EREREREREEKEREKKRI------EKEKERAREIEKEREKARQAVERATREARERAAA 568
             + E +R +  +E++R       E+E+      +KE    +  ++    + R R A 
Sbjct: 532 TEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKAC 589

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 44.6 bits (104), Expect = 2e-04
 Identities = 24/182 (13%), Positives = 61/182 (33%), Gaps = 2/182 (1%)

Query: 428 NEYGEVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDR 487
                + SP + E      S         +     +       R+  +A    ++    +
Sbjct: 409 GLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSK 468

Query: 488 EE-RATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEK 546
           E          + L  + ++ E    +    +   +   E +R+ +++ ++KER+ +   
Sbjct: 469 ESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHL 528

Query: 547 EREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERA 606
           ++   +   +R      +      +L+ E+  + K       R  +  +Q  Q + R R 
Sbjct: 529 KQLTEKMENDRVQLLKEQERTLALKLQ-EQEQLLKEGFQKESRIMKNEIQDLQTKMRRRK 587

Query: 607 AA 608
           A 
Sbjct: 588 AC 589

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 36/250 (14%), Positives = 98/250 (39%), Gaps = 7/250 (2%)

Query: 444 AAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDRE 503
           A   +  +++ +   + K +  ++  ++ S     ++E ++   ++    +     L+R 
Sbjct: 32  AEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRR 91

Query: 504 MQQRE---KGEEQRRLEREREREREEKERE--KKRIEKEKERAREIEKEREKARQAVERA 558
           +Q  E      ++R     ++ E  EK  +  ++ ++  + RA++ E++ E     ++ A
Sbjct: 92  IQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEA 151

Query: 559 TREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAA 618
              A +       +  +   ++     A ERAE +  + A+ E   +      +  E  A
Sbjct: 152 KHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQA 211

Query: 619 AEARER-ANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEARERAAA 677
            +  ++    E   K   ++   A T AE  +R     ++++  +  +   A+  +  A 
Sbjct: 212 EKYSQKEDKYEEEIKVLSDKLKEAETRAEFAER-SVTKLEKSIDDLEDELYAQKLKYKAI 270

Query: 678 AARANQNQQK 687
           +   +     
Sbjct: 271 SEELDHALND 280

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 45.0 bits (106), Expect = 6e-05
 Identities = 34/196 (17%), Positives = 77/196 (39%), Gaps = 3/196 (1%)

Query: 494 QDAQERLDREMQQREKGEEQRR-LEREREREREEKEREKKRIEKEKERAREIEKEREKAR 552
           Q  +   +  + + ++ E  ++  E   ++  +E    +K+++  ++   +  +  + A+
Sbjct: 9   QMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQ 68

Query: 553 QAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARE 612
           + +E A ++A +  A  A L       ++    A+ER   A  +  +AE     +    +
Sbjct: 69  EKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMK 128

Query: 613 RAERAAAEARERANA-EAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEA 671
             E  A +  E+    E + KEA+  A  A  + E + R +   ++     A ERA    
Sbjct: 129 VIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR-KLVIIESDLERAEERAELSE 187

Query: 672 RERAAAAARANQNQQK 687
            + A            
Sbjct: 188 GKCAELEEEIKTVTNN 203

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 36/219 (16%), Positives = 70/219 (31%), Gaps = 9/219 (4%)

Query: 481 ESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERERERE---------REEKEREK 531
           ++++   +     ++       E +  +K  E R  + E E            +E ++  
Sbjct: 2   DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61

Query: 532 KRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAE 591
           + ++  +E+    EK+   A   V    R  +       R +   A   +    A + A+
Sbjct: 62  EALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAAD 121

Query: 592 RAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRA 651
            +       E+R +   E  E  E    EA+  A    R+ E   R  V           
Sbjct: 122 ESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEE 181

Query: 652 ERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDN 690
                +   +E  E          +  A+A +  QK D 
Sbjct: 182 RAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDK 220

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 27/188 (14%), Positives = 66/188 (35%), Gaps = 5/188 (2%)

Query: 451 MKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQ---- 506
            +E +DRA+ +   A +  E     A  S   ++         ++  E  + ++++    
Sbjct: 95  FEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHI 154

Query: 507 -REKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARER 565
             +   +   + R+      + ER ++R E  + +  E+E+E +     ++    +A + 
Sbjct: 155 AEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKY 214

Query: 566 AAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERA 625
           +  E + + E   +      A  RAE A     + E       +     +       E  
Sbjct: 215 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEL 274

Query: 626 NAEAREKE 633
           +    +  
Sbjct: 275 DHALNDMT 282

>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor} Length = 195

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 23/134 (17%), Positives = 37/134 (27%), Gaps = 14/134 (10%)

Query: 552 RQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEA----RERAA 607
                   R         A L A   A+ +  A    + E AA +RA  +A    +ER  
Sbjct: 60  ELLPPAVARAVLAADPGAAPLTAVLDAMSQVGAQLVAQVEGAAQRRAVIDASPELQERER 119

Query: 608 AEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERA 667
            ++   +         R   +     A   A +A         A  +A +R         
Sbjct: 120 TKSAAISRAVQDALVRR---QVDADTAELVAQLATV-------AFGSAFRRWIDAEGHAD 169

Query: 668 AAEARERAAAAARA 681
                +      RA
Sbjct: 170 FGSCLDTVTDRLRA 183

>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1 Length = 251

 Score = 45.6 bits (107), Expect = 4e-05
 Identities = 36/227 (15%), Positives = 86/227 (37%), Gaps = 5/227 (2%)

Query: 439 VESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQE 498
                  AS A +++     +   +  KE++E E  K ++ RE +         +     
Sbjct: 12  QLPEPQTASLAELQQMKLFLKLLKKQEKELKELER-KGSKRREELLQKYSVLFLEPVYPR 70

Query: 499 RLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERA 558
            LD ++ + ++  E   +    E     + R+++   ++  +  E+ +E ++  +     
Sbjct: 71  GLDSQVVELKERLEMELIHLGEEYHDGIRRRKEQHATEQTAKITELARE-KQIAELKALK 129

Query: 559 TREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAA 618
                     + +L+A+R  +D+     R  +++AA +R + E       E   +  +  
Sbjct: 130 ESSESNIKDIKKKLEAKR--LDRIQVMMRSTSDKAAQERLKKEINNSHIQEV-VQTIKLL 186

Query: 619 AEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARE 665
            E   R   +  EK+A    ++   E +  Q A     ++  +   E
Sbjct: 187 TEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAVAEYEEKLKTLTVE 233

>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus} Length = 526

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 7/136 (5%)

Query: 488 EERATQQDAQERLDREMQQREKG--EEQRRLEREREREREEKEREKKRIEKEKERAREI- 544
           E+    +  + + + +++++     EE             E E++   + K      +I 
Sbjct: 103 EDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKIL 162

Query: 545 EKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARE 604
            +E  + R+      +E  ER  AE  +  E      A   A E  ER  +   Q EA +
Sbjct: 163 TEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIE-VERDGM---QEEAIQ 218

Query: 605 RAAAEARERAERAAAE 620
             A    +  E A+ E
Sbjct: 219 EIAGMTADVLEAASEE 234

>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus} Length = 526

 Score = 46.1 bits (109), Expect = 5e-05
 Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 14/173 (8%)

Query: 432 EVPSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERA 491
           E+P P         A    +++       + ++  +++E+   +       +  +     
Sbjct: 83  EIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEI 142

Query: 492 TQQDAQERLDREMQQREK--GEEQRRLERERER-EREEKER---EKKRIEKEKER----A 541
             +   + L++ +    K   EE  ++ R     ++E  ER   E   +++ +++     
Sbjct: 143 EDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALK 202

Query: 542 REIEKER----EKARQAVERATREARERAAAEARLKAERAAVDKANAAARERA 590
             IE ER    E+A Q +   T +  E A+ E  L     A   A   A E A
Sbjct: 203 NAIEVERDGMQEEAIQEIAGMTADVLEAASEEVPLIGAGMATAVATGRAIEGA 255

>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus} Length = 526

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 25/172 (14%)

Query: 513 QRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARL 572
           Q +L+   + +R E  R K   + +++  +E+E+              + ++       +
Sbjct: 96  QAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAV 155

Query: 573 KAERAAVDKANAAARERAERAAVQRA-QAEARERAAAEARERAERAAAEARERANAEARE 631
            +    + +      E  +   +  A Q E  ER  AE     E      R++ +A    
Sbjct: 156 TSYNKILTE------EDLQMRRLATALQKEIGERTHAETVMVKE-----YRDKIDALKNA 204

Query: 632 KEARERASVARTEAEALQRAERAAVQRA--ASEARERAAAEARERAAAAARA 681
            E          E + +Q  E A  + A   ++  E A+ E     A  A A
Sbjct: 205 IEV---------ERDGMQ--EEAIQEIAGMTADVLEAASEEVPLIGAGMATA 245

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 20/147 (13%), Positives = 53/147 (36%), Gaps = 2/147 (1%)

Query: 487 REERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEK 546
           R++     + +E  ++ +   E  EE+  L+ +  +  +  +    +I   +++  EI+ 
Sbjct: 31  RKDLDKALNDKEAKNKAILNLE--EEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKS 88

Query: 547 EREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERA 606
           ERE     +E    + R   A       +     K+      + E   +++   E     
Sbjct: 89  ERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLV 148

Query: 607 AAEARERAERAAAEARERANAEAREKE 633
             E +   E      +++ +   + + 
Sbjct: 149 ENEVKNIKETQQIIFKKKEDLVEKTEP 175

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 21/161 (13%), Positives = 55/161 (34%), Gaps = 13/161 (8%)

Query: 475 KAARSRESVQPDREERATQQDAQERL-DREMQQREKGEEQRRLEREREREREEKEREKKR 533
             +R+ ++      +  + +D    L +  +  + K       + + E+   +   E  R
Sbjct: 110 IISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAK--NFLVFQGDVEQIAAQSPVELSR 167

Query: 534 IEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAA------- 586
           + +E   + + +KE E+ ++ +E+ ++ A E      R+  E                  
Sbjct: 168 MFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRG 227

Query: 587 ---RERAERAAVQRAQAEARERAAAEARERAERAAAEARER 624
               E   R  V   + E  +    +   +  +   + +E 
Sbjct: 228 SRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKEL 268

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 36/248 (14%), Positives = 57/248 (22%), Gaps = 16/248 (6%)

Query: 446 ASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQ 505
            +A  M   +     +         R       S        +      D         +
Sbjct: 314 TTAEEMSAQLTGVLREVVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAE 373

Query: 506 QREKGEEQRRLERER--EREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREAR 563
           +    E    L        +      +   + +  +    +   R  A  A      E+ 
Sbjct: 374 KLTANEIVTALSVPLVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESV 433

Query: 564 ERAAAEARLKAERAAVDKANAAARERAE------RAAVQRAQAEARERAAAEARERAERA 617
           E    E R   +   V KA     + AE      R    RA AE        A +     
Sbjct: 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEV 493

Query: 618 AAE-----ARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERAAAEAR 672
                   A + A A   E              + +       +  A   AR R+A   R
Sbjct: 494 LDTFPGELAPKLALAATAELAGNTD---EHKFYQTVWSTNDGVISAAFGLARARSAEGDR 550

Query: 673 ERAAAAAR 680
             A     
Sbjct: 551 VGAVRTLD 558

>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240

 Score = 43.4 bits (101), Expect = 1e-04
 Identities = 24/219 (10%), Positives = 55/219 (25%), Gaps = 1/219 (0%)

Query: 452 KEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGE 511
           K        +F  +   R   S +  + +     +R +    +  +   ++   +RE  +
Sbjct: 22  KPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQ 81

Query: 512 EQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEAR 571
                     +  +EK  +K    KE   A       E+ ++  + A    +        
Sbjct: 82  RAIEENNNWIKMAKEKLAQKMESNKENREAH-FAAMLERLQEKDKHAEEVRQRAIEENNN 140

Query: 572 LKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEARE 631
                         + +   +           E+   E                 A+ + 
Sbjct: 141 WIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKL 200

Query: 632 KEARERASVARTEAEALQRAERAAVQRAASEARERAAAE 670
            +  E     R    A          + A E R+    +
Sbjct: 201 AQKMESNKENREAHFAAMLERLQEKDKHAEEVRKNKELK 239

>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240

 Score = 41.9 bits (97), Expect = 5e-04
 Identities = 33/233 (14%), Positives = 72/233 (30%), Gaps = 4/233 (1%)

Query: 461 KFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLERER 520
               + E+  +          +    R    + ++ Q++L+   ++R+  E +       
Sbjct: 12  TSGQSWEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAE 71

Query: 521 EREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVD 580
           +RE E +  ++   E         EK  +K     E         AA   RL+ +    +
Sbjct: 72  KREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKEN---REAHFAAMLERLQEKDKHAE 128

Query: 581 KANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKEARERASV 640
           +    A E          +  A++  + +   + + A          E   +  +     
Sbjct: 129 EVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEE 188

Query: 641 ARTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLE 693
                +  +  + A    +  E RE   A   ER     +  +  +KN    E
Sbjct: 189 NNNWIKMAKE-KLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRKNKELKE 240

>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP} Length = 207

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 10/134 (7%), Positives = 26/134 (19%), Gaps = 4/134 (2%)

Query: 552 RQAVERATREARERAAAEARLKAERAAVDKANAAARERAE----RAAVQRAQAEARERAA 607
              +     +   +      +    AA+ + NA           R  +       +  + 
Sbjct: 70  DAHLAEMRAQLAAQPDDIPIVDGLTAALLQFNAFPASEEINHRKRMGLILRVPALQAYSV 129

Query: 608 AEARERAERAAAEARERANAEAREKEARERASVARTEAEALQRAERAAVQRAASEARERA 667
                     A     R      +   R    +    A +             +E     
Sbjct: 130 VMYEGWRNVIAEYVASRLGTSPTDHVPRTVGYLLLGVAMSAYEQWLDDDSLELNELLASG 189

Query: 668 AAEARERAAAAARA 681
                +  ++    
Sbjct: 190 MQSLYDGLSSLGEP 203

>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 1/100 (1%)

Query: 568 AEARLKAERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANA 627
                  +  AV++   +    A +  V         +    AR   + A  EA E+ +A
Sbjct: 857 EFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSA 916

Query: 628 E-AREKEARERASVARTEAEALQRAERAAVQRAASEARER 666
           E +R +  R      R +      + R  V  +  +A  R
Sbjct: 917 ELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWR 956

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418

 Score = 42.9 bits (100), Expect = 4e-04
 Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 434 PSPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQ 493
                 +  +  +  A M+E      AK +   EM   + F   + +E VQ  ++  A  
Sbjct: 303 VDNNKNKGQLTKSPLAQMEEERREHVAKMKK-MEMEMEQVF-EMKVKEKVQKLKDSEAEL 360

Query: 494 QDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKAR 552
           Q   E++ + ++ + K  E++R + E E+   E    ++RI +++  +R +EK ++K +
Sbjct: 361 QRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEA---QQRILEQQNSSRTLEKNKKKGK 416

>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor} Length = 222

 Score = 41.2 bits (96), Expect = 7e-04
 Identities = 28/179 (15%), Positives = 45/179 (25%), Gaps = 5/179 (2%)

Query: 514 RRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLK 573
           RRL   R    +  +       +      +    R     A   A  +  E   A+  + 
Sbjct: 45  RRLRLVR-ALIQVGKVPVATAREVLGHVDDDSLGRTVRLGAALWALPQDAEPDEADPAVA 103

Query: 574 AERAAVDKANAAARERAERAAVQRAQAEARERAAAEARERAERAAAEARERANAEAREKE 633
           A R  VD+          R     +        A  A  R +            E   + 
Sbjct: 104 AARVEVDRLLELLGWETSRELAPLSPVHRSLVVAVAALRRLDYPWDAELMAPYGELMMEV 163

Query: 634 ARERASVARTEAEALQRAERA----AVQRAASEARERAAAEARERAAAAARANQNQQKN 688
           AR       T A   ++ E A     + +    A  R A E             +   +
Sbjct: 164 ARRDLDFMETHASEAEKVEMAVAAAVLFQPVLRALHRLAQEEESARRYGIELEHHHHHH 222

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A Length = 198

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 16/98 (16%), Positives = 30/98 (30%)

Query: 516 LEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAE 575
            E   +   +E ER+ + I  E  +  E  KE  +     +      R +  AE   +  
Sbjct: 4   AELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRI 63

Query: 576 RAAVDKANAAARERAERAAVQRAQAEARERAAAEARER 613
            A         R   +   +     E + R    + + 
Sbjct: 64  IANARLEVRRKRLAIQEEIISSVLEEVKRRLETMSEDE 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	965
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.83
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.77
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.73
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	97.76
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	97.49
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	97.44
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	97.35
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	97.25
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	97.24
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	97.23
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	97.2
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	97.18
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	97.18
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	97.13
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	97.12
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	97.07
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	97.01
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	96.98
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	96.97
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	96.97
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	96.89
2guz_A	71	Mitochondrial import inner membrane translocase su	96.86
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	96.82
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	96.82
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	96.66
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	96.27
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	96.25
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	96.19
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	95.53
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	94.83
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	94.25
2guz_B	65	Mitochondrial import inner membrane translocase su	93.65
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	93.34
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	92.88
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	92.01
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	86.05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	85.83

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.83  E-value=2.7e-21  Score=177.20  Aligned_cols=89  Identities=40%  Similarity=0.649  Sum_probs=82.5

Q ss_pred             HhHHHHHHHHhccccccHHHHhhccccccCCC-CCCccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHH
Q 002109          817 ETLDVEIKRWAAGKEGNIRALLATMQYVLWPE-SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAE  895 (965)
Q Consensus       817 d~~~~ki~~W~~gke~nIRaLLssL~~VLW~~-~~W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~  895 (965)
                      |.|+.+|+.|+.||++|||+||+|||.|||++ +.|+.+++..+.++..||++|||+++.+||||++.  .  +++++|+
T Consensus         1 ~~i~~~i~~W~~gk~~~ir~lL~~l~~~L~~~~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~--~--~~~~~A~   76 (92)
T 2qwo_B            1 DPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATG--Q--PYEQYAK   76 (92)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHGGGTSCTTCCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTT--S--TTHHHHH
T ss_pred             ChHHHHHHHHHccChhHHHHHHHHHHHHhcccccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--c--hhHhHHH
Confidence            57999999999999999999999999999995 99999999999999999999999999999999974  2  2346999


Q ss_pred             HHHHHHHHHHHHhh
Q 002109          896 KVFDLLKVQQIYCR  909 (965)
Q Consensus       896 ~vF~~Ln~a~~~~r  909 (965)
                      .+|..|++||++++
T Consensus        77 ~~F~~i~eAyevL~   90 (92)
T 2qwo_B           77 MIFMELNDAWSEFE   90 (92)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999875

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.77  E-value=3.2e-19  Score=167.39  Aligned_cols=96  Identities=51%  Similarity=0.932  Sum_probs=90.5

Q ss_pred             HhHHhHHHHHHHHhccccccHHHHhhccccccCCCCCCccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH
Q 002109          814 RIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI  893 (965)
Q Consensus       814 ~l~d~~~~ki~~W~~gke~nIRaLLssL~~VLW~~~~W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i  893 (965)
                      .+++.|+.+|+.|+.|+++|||+||++|+.|||++..|..|.+.+..+...||++|||+++.+||||+...|++.+++++
T Consensus         6 ~~~~~~~~~i~~W~~~~~~~ir~lL~~l~~~l~~~~d~Y~vl~~~~As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~   85 (106)
T 3ag7_A            6 EEIKNIDAKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYM   85 (106)
T ss_dssp             HHHHHHHHHHHHHHTTTTTCHHHHHTTGGGTSCTTSCCCCCCGGGSCSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcccCCHHHHcCCCCCCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHH
Confidence            35789999999999999999999999999999999999999999988899999999999999999999977788999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 002109          894 AEKVFDLLKVQQIYCR  909 (965)
Q Consensus       894 A~~vF~~Ln~a~~~~r  909 (965)
                      |+..|..|++||+.+.
T Consensus        86 A~~~F~~I~~AYevLs  101 (106)
T 3ag7_A           86 AEKVFELLQEAWDHFN  101 (106)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            9999999999998864

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.73  E-value=1e-17  Score=170.60  Aligned_cols=93  Identities=41%  Similarity=0.638  Sum_probs=84.2

Q ss_pred             hHHhHHHHHHHHhccccccHHHHhhccccccCC-CCCCccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHH
Q 002109          815 IAETLDVEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI  893 (965)
Q Consensus       815 l~d~~~~ki~~W~~gke~nIRaLLssL~~VLW~-~~~W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i  893 (965)
                      .+|.|+.+|..|..|+++|||+||++|+.|||+ ...|..+++...++...||++|||+++++||||+..  .+.+  .+
T Consensus        83 ~~D~l~~~i~~W~~gk~~niRaLLssl~~vl~~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~--~~~e--~~  158 (182)
T 1n4c_A           83 EMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATG--QPYE--QY  158 (182)
T ss_dssp             CCCTTTHHHHHHHHHHTTCHHHHHHHGGGGSCTTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSS--CTTH--HH
T ss_pred             hccHHHHHHHHHHcccHHHHHHHHHHHHHHhcCccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCC--cchH--HH
Confidence            378899999999999999999999999999999 578999999999999999999999999999999974  3333  49


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 002109          894 AEKVFDLLKVQQIYCRFF  911 (965)
Q Consensus       894 A~~vF~~Ln~a~~~~r~~  911 (965)
                      |+.+|..|++||+++.=.
T Consensus       159 A~~~F~~I~eAYevLsD~  176 (182)
T 1n4c_A          159 AKMIFMELNDAWSEFENQ  176 (182)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCH
Confidence            999999999999988643

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=97.76  E-value=2e-05  Score=71.40  Aligned_cols=58  Identities=16%  Similarity=0.108  Sum_probs=47.9

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR  909 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r  909 (965)
                      |.-+++..-.+...||++|+++++.+||||+.. +.+.+.+-.|...|..|++||+.+.
T Consensus        19 y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~-~~~~~~~~~~~~~f~~i~~Ay~~L~   76 (94)
T 1wjz_A           19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSA-DVPAGTMEECMQKFIEIDQAWKILG   76 (94)
T ss_dssp             HHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCT-TCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-CCChhhhHHHHHHHHHHHHHHHHHC
Confidence            455666666788999999999999999999874 3456667789999999999998764

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.49  E-value=2.7e-05  Score=70.49  Aligned_cols=52  Identities=25%  Similarity=0.414  Sum_probs=40.4

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRF  910 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~  910 (965)
                      |.-+++..-.+...||++|+++++.+||||....+        +...|..|++||+.+.=
T Consensus        30 y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~--------~~~~f~~i~~Ay~~L~d   81 (90)
T 2ys8_A           30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG--------SEDAFKAVVNARTALLK   81 (90)
T ss_dssp             HHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTT--------HHHHHHHHHHHHHHHHH
T ss_pred             HHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcc--------HHHHHHHHHHHHHHHCC
Confidence            44455566677899999999999999999987432        34569999999887653

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=97.44  E-value=7.3e-05  Score=67.81  Aligned_cols=54  Identities=28%  Similarity=0.241  Sum_probs=41.7

Q ss_pred             cccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 002109          855 SLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFILL  914 (965)
Q Consensus       855 ~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~~  914 (965)
                      ++..-.+...||++|+++++.+||||...   .   .-.|...|..|++||+.+.=.+++
T Consensus        23 gv~~~as~~eIKkaYrkla~~~HPDk~~~---~---~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           23 EQAWKLPESERKKIIRRLYLKWHPDKNPE---N---HDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             HHTTSSCSHHHHHHHHHHHHHTCTTTSSS---C---HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCCCC---c---hHHHHHHHHHHHHHHHHHHhhccc
Confidence            33334466899999999999999999652   1   135788999999999988765554

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.35  E-value=0.00011  Score=64.78  Aligned_cols=54  Identities=30%  Similarity=0.357  Sum_probs=41.8

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRF  910 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~  910 (965)
                      |.-+++..-.+...||++|++.++.+||||...   .   .-.|...|..|++||+.+.=
T Consensus        12 y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~---~~~a~~~f~~i~~Ay~~L~d   65 (82)
T 2ej7_A           12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPE---N---KEEAERRFKQVAEAYEVLSD   65 (82)
T ss_dssp             HHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCST---T---HHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---c---HHHHHHHHHHHHHHHHHHCC
Confidence            344455555678999999999999999999753   1   23578899999999987653

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=97.25  E-value=0.00013  Score=63.78  Aligned_cols=50  Identities=26%  Similarity=0.342  Sum_probs=38.2

Q ss_pred             ccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109          852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR  909 (965)
Q Consensus       852 ~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r  909 (965)
                      .-+++..-.+...||++|+++++.+||||....        .+...|..|++||+.+.
T Consensus         7 ~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~--------~~~~~f~~i~~Ay~~L~   56 (77)
T 1hdj_A            7 QTLGLARGASDEEIKRAYRRQALRYHPDKNKEP--------GAEEKFKEIAEAYDVLS   56 (77)
T ss_dssp             HHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT--------THHHHHHHHHHHHHHTT
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------cHHHHHHHHHHHHHHHC
Confidence            344555556789999999999999999998642        24667888888887654

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.24  E-value=0.00011  Score=66.53  Aligned_cols=56  Identities=29%  Similarity=0.275  Sum_probs=41.6

Q ss_pred             ccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002109          852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFIL  913 (965)
Q Consensus       852 ~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~  913 (965)
                      .-+++..-.+...||++|+++++.+||||....      .-.|+..|..|++||+.+.=...
T Consensus        13 ~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~------~~~a~~~f~~i~~Ay~~L~d~~~   68 (92)
T 2dmx_A           13 EVLGVQASASPEDIKKAYRKLALRWHPDKNPDN------KEEAEKKFKLVSEAYEVLSDSKK   68 (92)
T ss_dssp             HHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSC------SHHHHHHHHHHHHHHHHHHSHHH
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCcc------HHHHHHHHHHHHHHHHHHCCHHH
Confidence            344555556779999999999999999998632      12567788888888887654443

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=97.20  E-value=0.00015  Score=65.23  Aligned_cols=51  Identities=24%  Similarity=0.285  Sum_probs=37.5

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR  909 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r  909 (965)
                      |.-+++..-.+...||++|++.++.+||||....        .++..|..|++||+.+.
T Consensus        20 y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--------~~~~~f~~i~~Ay~~L~   70 (88)
T 2cug_A           20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDP--------GAEDRFIQISKAYEILS   70 (88)
T ss_dssp             HHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCST--------THHHHHHHHHHHHHHHH
T ss_pred             HHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCh--------hHHHHHHHHHHHHHHHC
Confidence            4556666667889999999999999999998742        13455666666665543

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.18  E-value=0.00016  Score=66.47  Aligned_cols=54  Identities=17%  Similarity=0.244  Sum_probs=40.3

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFF  911 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~  911 (965)
                      |.-+++..-.+...||++|++.++.+||||....  .     .|...|..|++||+++.=.
T Consensus        20 Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--~-----~a~~~f~~i~~Ay~~L~d~   73 (99)
T 2yua_A           20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS--A-----EAAERFTRISQAYVVLGSA   73 (99)
T ss_dssp             HHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSC--S-----HHHHHHHHHHHHHHHTTSH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--H-----HHHHHHHHHHHHHHHHCCH
Confidence            3445555566789999999999999999998632  1     2566788888888776433

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=97.18  E-value=0.00031  Score=70.94  Aligned_cols=62  Identities=19%  Similarity=0.276  Sum_probs=47.4

Q ss_pred             cchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhh-----ccccccccc
Q 002109          859 LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFIL-----LCLEGFNLT  922 (965)
Q Consensus       859 l~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~-----~~~~~~~~~  922 (965)
                      -|+...||++|++..+.+||||+..  .+...+-+|...|..||+||..++=...     +.|.|+.+.
T Consensus        14 ~i~~~eIk~aYr~L~~~~HPDk~~~--~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~   80 (171)
T 1fpo_A           14 QLDTQALSLRFQDLQRQYHPDKFAS--GSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLA   80 (171)
T ss_dssp             CCCHHHHHHHHHHHHHHTCGGGGTT--SCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCTT
T ss_pred             CCCHHHHHHHHHHHHHHhCcCCCCC--CCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCcc
Confidence            4578999999999999999999974  3445556788899999999887653332     456676654

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.13  E-value=0.00017  Score=64.75  Aligned_cols=52  Identities=19%  Similarity=0.183  Sum_probs=38.9

Q ss_pred             ccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhh
Q 002109          852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFF  911 (965)
Q Consensus       852 ~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~  911 (965)
                      .-+++..-.+...||++|+++++.+||||....        -|...|..|++||+.+.=.
T Consensus        11 ~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--------~a~~~f~~i~~Ay~~L~d~   62 (88)
T 2ctr_A           11 DILGVPKSASERQIKKAFHKLAMKYHPDKNKSP--------DAEAKFREIAEAYETLSDA   62 (88)
T ss_dssp             HHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSH--------HHHHHHHHHHHHHHHHHSS
T ss_pred             HHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCh--------HHHHHHHHHHHHHHHHCCH
Confidence            334455556789999999999999999997621        3667788888888776533

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.12  E-value=0.00015  Score=63.47  Aligned_cols=50  Identities=22%  Similarity=0.313  Sum_probs=37.0

Q ss_pred             ccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109          852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR  909 (965)
Q Consensus       852 ~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r  909 (965)
                      .-+++..-.+...||++|++.++.+||||....        -+...|..|++||+.+.
T Consensus        11 ~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--------~~~~~f~~i~~Ay~~L~   60 (78)
T 2ctp_A           11 EILGVSRGASDEDLKKAYRRLALKFHPDKNHAP--------GATEAFKAIGTAYAVLS   60 (78)
T ss_dssp             HHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSH--------HHHHHHHHHHHHHHHHT
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------cHHHHHHHHHHHHHHHC
Confidence            334444456779999999999999999998631        24667778888877654

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=97.07  E-value=0.00057  Score=63.64  Aligned_cols=56  Identities=20%  Similarity=0.301  Sum_probs=42.9

Q ss_pred             CccCcccccc-hhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 002109          851 WQPVSLTDLI-TAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRF  910 (965)
Q Consensus       851 W~~v~~~dl~-~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~  910 (965)
                      |.-+++..-. +...||++|++.++.+||||...    ....-.|...|..|++||+.+.=
T Consensus        18 y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~----~~~~~~a~~~f~~i~~AY~~L~d   74 (109)
T 2qsa_A           18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKN----KEEKLLAEERFRVIATAYETLKD   74 (109)
T ss_dssp             HHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCS----HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----ccccHHHHHHHHHHHHHHHHHCC
Confidence            4556666545 88999999999999999999863    34445678888888888876643

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=97.01  E-value=0.00027  Score=73.45  Aligned_cols=97  Identities=19%  Similarity=0.269  Sum_probs=60.2

Q ss_pred             HHHhcccc---ccHHHHhhcccccc-CCCCC---CccCccccc--chhhhHhHHhhhccccccCccccccCCCHHHHHHH
Q 002109          824 KRWAAGKE---GNIRALLATMQYVL-WPESG---WQPVSLTDL--ITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIA  894 (965)
Q Consensus       824 ~~W~~gke---~nIRaLLssL~~VL-W~~~~---W~~v~~~dl--~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA  894 (965)
                      .-|..|..   .+...+++..-.++ -++..   |.-+++..-  ++...||++||+..+.+||||+..  .+...+-+|
T Consensus        12 ~Cw~C~~~~~~~~~~~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~--~~~~e~~~a   89 (207)
T 3bvo_A           12 RCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQ--RSQTEKDFS   89 (207)
T ss_dssp             BCSSSCCBCCSSCSCCCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTT--SCHHHHHHH
T ss_pred             CCCCCCCCcccccccccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--CCHHHHHHH
Confidence            35777654   23334444332223 22212   333444432  567899999999999999999974  344455678


Q ss_pred             HHHHHHHHHHHHHhhhhhh-----ccccccccc
Q 002109          895 EKVFDLLKVQQIYCRFFIL-----LCLEGFNLT  922 (965)
Q Consensus       895 ~~vF~~Ln~a~~~~r~~~~-----~~~~~~~~~  922 (965)
                      ...|..||+||..++=-..     +.|.|+.+.
T Consensus        90 ~~~f~~In~AY~vLsdp~~R~~Yd~~l~G~~~~  122 (207)
T 3bvo_A           90 EKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIP  122 (207)
T ss_dssp             HHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHhcCCCcc
Confidence            8889999999877652222     356777544

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=96.98  E-value=0.00034  Score=64.56  Aligned_cols=51  Identities=29%  Similarity=0.339  Sum_probs=37.3

Q ss_pred             CcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 002109          854 VSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRF  910 (965)
Q Consensus       854 v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~  910 (965)
                      +++..-.+...||++|++.++.+||||....      .-.|..+|..|++||+.+.=
T Consensus         8 Lgv~~~as~~eIk~aYr~la~~~HPDk~~~~------~~~a~~~f~~I~~AY~vL~d   58 (99)
T 2lgw_A            8 LDVPRSASADDIKKAYRRKALQWHPDKNPDN------KEFAEKKFKEVAEAYEVLSD   58 (99)
T ss_dssp             SSSCTTSCHHHHHHHHHHHHHHTSTTTCCSC------CHHHHHHHHHHHHHHHHHHS
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHCcCCCCcc------HHHHHHHHHHHHHHHHHHCC
Confidence            3444445678999999999999999997631      12467777788888776543

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=96.97  E-value=0.00022  Score=65.85  Aligned_cols=55  Identities=18%  Similarity=0.255  Sum_probs=41.5

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFI  912 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~  912 (965)
                      |.-+++..-.+...||++|+++++.+||||.... .      .|+..|..|++||+.+.=..
T Consensus         6 y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~------~a~~~f~~i~~Ay~~L~d~~   60 (103)
T 1bq0_A            6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-K------EAEAKFKEIKEAYEVLTDSQ   60 (103)
T ss_dssp             TTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTT-C------THHHHHHHHTTTTTSTTCSH
T ss_pred             HHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-H------HHHHHHHHHHHHHHHHCCHH
Confidence            4445555567889999999999999999998742 1      25678889999988765433

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=96.97  E-value=0.00034  Score=68.99  Aligned_cols=55  Identities=16%  Similarity=0.109  Sum_probs=43.3

Q ss_pred             CcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109          854 VSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR  909 (965)
Q Consensus       854 v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r  909 (965)
                      +++..-.+...||++|+++.+.+||||.... .+.+.+-.|...|..||+||..++
T Consensus        16 Lgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~-~~~~~~~~a~~~f~~i~~Ay~~L~   70 (155)
T 2l6l_A           16 LGADPSANISDLKQKYQKLILMYHPDKQSTD-VPAGTVEECVQKFIEIDQAWKILG   70 (155)
T ss_dssp             HTCCTTCCHHHHHHHHHHHHHHHSCCCCCCC-CTTHHHHHHHHHHHHHHHHHHHSS
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-CchhHHHHHHHHHHHHHHHHHHcC
Confidence            3444445679999999999999999999853 233555678899999999998765

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.89  E-value=0.00033  Score=65.55  Aligned_cols=52  Identities=29%  Similarity=0.376  Sum_probs=38.9

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR  909 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r  909 (965)
                      |.-+++..-.+...||++|+++++.+||||...   ..    -|...|..|++||+.+.
T Consensus        20 Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~---~~----~a~~~f~~i~~Ay~vL~   71 (109)
T 2ctw_A           20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPD---NP----EAADKFKEINNAHAILT   71 (109)
T ss_dssp             HHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTT---CH----HHHHHHHHHHHHHHHHT
T ss_pred             HHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---cH----HHHHHHHHHHHHHHHHc
Confidence            445566666788999999999999999999863   11    25667777777776654

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=96.86  E-value=0.00046  Score=59.81  Aligned_cols=45  Identities=27%  Similarity=0.316  Sum_probs=34.7

Q ss_pred             cccc-cchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 002109          855 SLTD-LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRF  910 (965)
Q Consensus       855 ~~~d-l~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~  910 (965)
                      ++.. -.+...||++|++.++.+||||.   | +.       ..|..||+||+.+.=
T Consensus        21 gl~~~~a~~~eIk~ayr~l~~~~HPDk~---g-~~-------~~f~~i~~Aye~L~~   66 (71)
T 2guz_A           21 NLTENTLTKKKLKEVHRKIMLANHPDKG---G-SP-------FLATKINEAKDFLEK   66 (71)
T ss_dssp             TCCTTTCCHHHHHHHHHHHHHHHCGGGT---C-CH-------HHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCCC---C-CH-------HHHHHHHHHHHHHhh
Confidence            3443 36678999999999999999993   3 32       278999999987753

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=96.82  E-value=0.00047  Score=59.65  Aligned_cols=49  Identities=22%  Similarity=0.337  Sum_probs=35.9

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR  909 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r  909 (965)
                      |.-+++..-.+...||++|++.++.+||||...  .        ...|..|++||..+.
T Consensus        11 y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~--~--------~~~f~~i~~Ay~~L~   59 (73)
T 2och_A           11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPD--G--------AEQFKQISQAYEVLS   59 (73)
T ss_dssp             HHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT--C--------HHHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC--H--------HHHHHHHHHHHHHHC
Confidence            344455555678999999999999999999853  2        235777777776653

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.82  E-value=0.0006  Score=59.73  Aligned_cols=54  Identities=19%  Similarity=0.171  Sum_probs=39.4

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFF  911 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~  911 (965)
                      |.-+++..-.+...||++|++.++.+||||....  .     .|...|..|++||+.+.=.
T Consensus        10 y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~--~-----~a~~~f~~i~~Ay~~L~d~   63 (79)
T 2dn9_A           10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD--P-----KAKEKFSQLAEAYEVLSDE   63 (79)
T ss_dssp             HHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSC--T-----THHHHHHHHHHHHHHHHSH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--H-----HHHHHHHHHHHHHHHHCCH
Confidence            3444555556789999999999999999998742  1     2566777888887766433

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.66  E-value=0.001  Score=62.36  Aligned_cols=51  Identities=18%  Similarity=0.283  Sum_probs=35.8

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC  908 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~  908 (965)
                      |.-+++..-.+...||++|++.++.+||||.... ..      |...|..|++||..+
T Consensus        23 Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~------a~~~f~~i~~Ay~vL   73 (112)
T 2ctq_A           23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPEN-PK------AVETFQKLQKAKEIL   73 (112)
T ss_dssp             HHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTC-ST------HHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HH------HHHHHHHHHHHHHHH
Confidence            4556666667889999999999999999998742 11      344555555555443

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=96.27  E-value=0.0011  Score=62.95  Aligned_cols=20  Identities=35%  Similarity=0.469  Sum_probs=18.8

Q ss_pred             hhHhHHhhhccccccCcccc
Q 002109          863 AAVKKCYRKATLCIHPDKVQ  882 (965)
Q Consensus       863 ~~VKk~YrKA~l~vHPDK~~  882 (965)
                      ..||++||++++.+||||..
T Consensus        25 ~eIk~aYr~la~~~HPDk~~   44 (114)
T 1gh6_A           25 PLMRKAYLKKCKEFHPDKGG   44 (114)
T ss_dssp             HHHHHHHHHTTTTCCTTTCC
T ss_pred             HHHHHHHHHHHHHHCCCCCc
Confidence            89999999999999999964

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=96.25  E-value=0.0019  Score=58.51  Aligned_cols=46  Identities=26%  Similarity=0.312  Sum_probs=32.1

Q ss_pred             cCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109          853 PVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC  908 (965)
Q Consensus       853 ~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~  908 (965)
                      -+++..-.+...||++|++.++.+||||...   +.+       .|..|++||+.+
T Consensus        13 iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~-------~f~~i~~Ay~~L   58 (92)
T 2o37_A           13 LLGVSPSANEQELKKGYRKAALKYHPDKPTG---DTE-------KFKEISEAFEIL   58 (92)
T ss_dssp             HHTCCTTCCHHHHHHHHHHHHHHHCTTSTTC---CHH-------HHHHHHHHHHHH
T ss_pred             HcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hHH-------HHHHHHHHHHHH
Confidence            3444445678999999999999999999853   223       455555555544

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=96.19  E-value=0.0029  Score=55.94  Aligned_cols=43  Identities=16%  Similarity=0.204  Sum_probs=32.4

Q ss_pred             chhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002109          860 ITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFIL  913 (965)
Q Consensus       860 ~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~  913 (965)
                      .+...||++|++.++.+||||..    +.       ..|..||+||+.++=.+.
T Consensus        25 a~~~eIk~aYr~la~~~HPDk~~----~~-------~~f~~i~~AYe~L~~~~~   67 (79)
T 1faf_A           25 GDFGRMQQAYKQQSLLLHPDKGG----SH-------ALMQELNSLWGTFKTEVY   67 (79)
T ss_dssp             TCHHHHHHHHHHHHHHSSGGGSC----CH-------HHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCC----CH-------HHHHHHHHHHHHHhhHHH
Confidence            66799999999999999999942    22       347777787776654433

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=95.53  E-value=0.0021  Score=65.46  Aligned_cols=59  Identities=25%  Similarity=0.389  Sum_probs=40.6

Q ss_pred             cchhhhHhHHhhhccccccCccccccCCCHHHHHH-HHHHHHHHHHHHHHhhhhhhccccccccc
Q 002109          859 LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI-AEKVFDLLKVQQIYCRFFILLCLEGFNLT  922 (965)
Q Consensus       859 l~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~i-A~~vF~~Ln~a~~~~r~~~~~~~~~~~~~  922 (965)
                      -++...||++||+..+.+||||...  +  .+++. ....|.+|.+...+..|-+.| ++|+.+.
T Consensus        29 ~a~~~eIk~aYr~la~~~HPDk~~~--a--~~~f~~i~~AY~vL~dp~~R~~Yd~~l-~~g~~~~   88 (181)
T 3uo3_A           29 TIDQSRLRKEYRQLQAQHHPDMAQQ--G--SEQSSTLNQAYHTLKDPLRRSQYMLKL-LRNIDLT   88 (181)
T ss_dssp             CCCHHHHHHHHHHHHHTCCTTSCCS--C--SSGGGSHHHHHHHHHSHHHHHHHHHHH-HHCCCTT
T ss_pred             CCCHHHHHHHHHHHHHHhCcCCCcc--H--HHHHHHHHHHHHHHcChHHHHHHHHHH-HhCCCcc
Confidence            3566899999999999999999864  1  12222 566777777776677776543 1566554

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=94.83  E-value=0.01  Score=60.00  Aligned_cols=47  Identities=19%  Similarity=0.321  Sum_probs=31.8

Q ss_pred             cccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109          855 SLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC  908 (965)
Q Consensus       855 ~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~  908 (965)
                      ++..-.+...||++||+..+.+||||.... ..      |...|..|++||+.+
T Consensus         9 ~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~-~~------~~~~f~~i~~Ay~~L   55 (210)
T 3apq_A            9 GVSKTASSREIRQAFKKLALKLHPDKNPNN-PN------AHGDFLKINRAYEVL   55 (210)
T ss_dssp             TCCTTCCHHHHHHHHHHHHHHHCGGGCTTC-TT------HHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hH------HHHHHHHHHHHHHHh
Confidence            333446778999999999999999998642 22      334455555555443

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=94.25  E-value=0.008  Score=66.50  Aligned_cols=33  Identities=18%  Similarity=0.336  Sum_probs=0.0

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccc
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQ  883 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~  883 (965)
                      |.-+++..-.+...||++||++.+.+||||...
T Consensus        31 Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~   63 (329)
T 3lz8_A           31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE   63 (329)
T ss_dssp             ---------------------------------
T ss_pred             HHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC
Confidence            455666666678999999999999999999864

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=93.65  E-value=0.033  Score=47.90  Aligned_cols=38  Identities=13%  Similarity=0.141  Sum_probs=28.7

Q ss_pred             chhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109          860 ITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC  908 (965)
Q Consensus       860 ~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~  908 (965)
                      .+...|+++|++.+...||||    |++   -||+.+|    |.|++++
T Consensus        19 a~~~~Ik~~yr~Lm~~nhPDk----GGS---~yl~~ki----~~Ake~l   56 (65)
T 2guz_B           19 LNMDKINNRFNYLFEVNDKEK----GGS---FYLQSKV----YRAAERL   56 (65)
T ss_dssp             CSHHHHHHHHHHHHHHTCGGG----TCC---HHHHHHH----HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCC----CCC---HHHHHHH----HHHHHHH
Confidence            677899999999999999999    444   5666555    4555444

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=93.34  E-value=0.052  Score=64.22  Aligned_cols=9  Identities=33%  Similarity=0.940  Sum_probs=5.8

Q ss_pred             ccccccccc
Q 002109          337 EDVWLTVSE  345 (965)
Q Consensus       337 ~dvwltvs~  345 (965)
                      .+|||-|++
T Consensus       214 ~~l~LGV~~  222 (575)
T 2i1j_A          214 TELWLGVDA  222 (575)
T ss_dssp             CEEEEEECS
T ss_pred             CEEEEEEcC
Confidence            467777664

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=92.88  E-value=0.23  Score=58.71  Aligned_cols=9  Identities=0%  Similarity=0.102  Sum_probs=4.0

Q ss_pred             HHhHHhHHH
Q 002109          813 HRIAETLDV  821 (965)
Q Consensus       813 ~~l~d~~~~  821 (965)
                      ..-.|.|..
T Consensus       536 ~t~~D~lh~  544 (575)
T 2i1j_A          536 ETAMDKIHR  544 (575)
T ss_dssp             CCHHHHHHH
T ss_pred             cchhHHHHH
Confidence            333455443

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=92.01  E-value=0.071  Score=54.12  Aligned_cols=47  Identities=17%  Similarity=0.171  Sum_probs=31.8

Q ss_pred             hhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002109          862 AAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFI  912 (965)
Q Consensus       862 ~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~  912 (965)
                      ...||++||++.+.+||||...    .++=......|.+|.+.-.+..|-.
T Consensus        27 ~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~   73 (174)
T 2pf4_E           27 IPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPD   73 (174)
T ss_dssp             HHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCG
T ss_pred             HHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhc
Confidence            5899999999999999999642    1222234667777777766666643

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=86.05  E-value=0.16  Score=61.06  Aligned_cols=61  Identities=15%  Similarity=0.407  Sum_probs=25.7

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHH-HHHHHHHHHHHHHHHhhhhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKY-IAEKVFDLLKVQQIYCRFFI  912 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~-iA~~vF~~Ln~a~~~~r~~~  912 (965)
                      |.-+++..-.+...||++||+..+.+||||..... ..++++ .....|.+|.+...+..|-.
T Consensus        24 y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~-~~~~~f~~i~~ay~~L~~~~~r~~yd~   85 (780)
T 3apo_A           24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP-NAHGDFLKINRAYEVLKDEDLRKKYDK   85 (780)
T ss_dssp             HHHHTCCTTCCHHHHHHHHCC------------------------CTHHHHHHSHHHHHHHTT
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh-HHHHHHHHHHHHHHHHcChHHHHHHHh
Confidence            44556666678899999999999999999985321 112221 13445555555555555543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=85.83  E-value=0.59  Score=50.22  Aligned_cols=50  Identities=28%  Similarity=0.300  Sum_probs=39.2

Q ss_pred             cccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 002109          855 SLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYC  908 (965)
Q Consensus       855 ~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~  908 (965)
                      ++..--....++++|+++++.+|||+...    .+.+-.|+..|..|++||+.+
T Consensus       389 g~~~~~~~~~~~~~y~~~~l~~~pd~~~~----~~~~~~a~~~~~~i~~ay~~L  438 (450)
T 2y4t_A          389 GVKRNAKKQEIIKAYRKLALQWHPDNFQN----EEEKKKAEKKFIDIAAAKEVL  438 (450)
T ss_dssp             CSSTTCCTTHHHHHHHHHHHHSCGGGCCS----HHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCccCCHHHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHHHHHHHHHh
Confidence            33333355889999999999999999863    344667899999999998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	965
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	4e-19
d2es4d1	280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	3e-10
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	6e-07
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	3e-06
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	5e-05
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	5e-05
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	2e-04
d1sa0e_	138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	5e-04
d1sa0e_	138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	6e-04
d1sa0e_	138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	0.001

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.1 bits (200), Expect = 4e-19
 Identities = 35/63 (55%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 819 LDVEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAAVKKCYRKATLCIH 877
             ++I  W  GKE NIRALL+TM  VLW  E+ W+PV + DL+T   VKK YRKA L +H
Sbjct: 3   EKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVH 62

Query: 878 PDK 880
           PDK
Sbjct: 63  PDK 65

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 6e-07
 Identities = 16/119 (13%), Positives = 45/119 (37%), Gaps = 4/119 (3%)

Query: 435 SPEDVESSIAAASAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQ 494
           S E +  +I        ++  +    + +        +     + +     ++     ++
Sbjct: 184 SKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKN----EQMMEQKER 239

Query: 495 DAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQ 553
             QE L +  ++ E    Q   E+ER    + +E+E+   E  ++ +R ++ E +  + 
Sbjct: 240 SYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQT 298

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 3e-06
 Identities = 21/119 (17%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 447 SAAAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQ 506
           S  +M +A+ + +      ++  E E  KA  ++ S +   E +   +   E+ +R  Q+
Sbjct: 184 SKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQE 243

Query: 507 REKGEEQRRLEREREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARER 565
             K   ++    E +R +  KE+E+    K +E+ + +++  +K  + ++   ++ + +
Sbjct: 244 HLKQLTEKM---ENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 5e-05
 Identities = 12/86 (13%), Positives = 33/86 (38%)

Query: 449 AAMKEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQRE 508
           +A   A    E + ++ + M ++E       ++  +    +R      QER      Q +
Sbjct: 215 SAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQ 274

Query: 509 KGEEQRRLEREREREREEKEREKKRI 534
           +   +   ++E    + E +  + ++
Sbjct: 275 EQLLKEGFQKESRIMKNEIQDLQTKM 300

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 5e-05
 Identities = 31/269 (11%), Positives = 93/269 (34%), Gaps = 26/269 (9%)

Query: 431 GEVPSPED-VESSIAAASAAAMKEAMDRAEAKFRHAKEMR-------ERESFKAARSRES 482
           G++P  E+ V +     ++AA+++A+   E +     ++              + R    
Sbjct: 24  GDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIE 83

Query: 483 VQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERA- 541
           V      +      Q+ L  +++++     ++  E   +R     +     +E+E +   
Sbjct: 84  VFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGI 143

Query: 542 -----------REIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERA 590
                      ++++  ++K  +   +  +            ++   A+ + +    E+ 
Sbjct: 144 YSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKE 203

Query: 591 ERAAVQRAQAEARERAAAEARERAERAAAEARERANA------EAREKEARERASVARTE 644
           +   V+R +AE+ + +A    E   +      ++  +      +  EK   +R  + + +
Sbjct: 204 KEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQ 263

Query: 645 AEALQRAERAAVQRAASEARERAAAEARE 673
              L    +   Q      ++ +     E
Sbjct: 264 ERTLALKLQEQEQLLKEGFQKESRIMKNE 292

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 12/146 (8%), Positives = 51/146 (34%), Gaps = 1/146 (0%)

Query: 459 EAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLER 518
               +  ++++++   +  +  ++ +  +    +++   + + +  Q   + E++  +ER
Sbjct: 151 RLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVER 210

Query: 519 EREREREEKEREKKRIEKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAA 578
            +  E  +   +     + K      +KER       +   +   +R       +   A 
Sbjct: 211 VK-AESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL 269

Query: 579 VDKANAAARERAERAAVQRAQAEARE 604
             +      +   +   +  + E ++
Sbjct: 270 KLQEQEQLLKEGFQKESRIMKNEIQD 295

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 3/98 (3%)

Query: 468 MRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEK 527
             E    K   + E  +    E        E+ + E +  +K  E+     +  +E+  +
Sbjct: 43  SLEEIQKKLEAAEERRKYQEAELLKHL--AEKREHEREVIQKAIEENNNFIKMAKEKLAQ 100

Query: 528 EREKKRIEKEKERAREIEKEREKARQAVE-RATREARE 564
           + E  +  +E   A  +E+ +EK + A E R  +E +E
Sbjct: 101 KMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 17/114 (14%), Positives = 44/114 (38%), Gaps = 1/114 (0%)

Query: 475 KAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRI 534
                  +    R    + ++ Q++L+   ++R K +E   L+   E+   E+E  +K I
Sbjct: 26  FDGVPEFNASLPRRRDPSLEEIQKKLEAA-EERRKYQEAELLKHLAEKREHEREVIQKAI 84

Query: 535 EKEKERAREIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARE 588
           E+     +  +++  +  ++ +              + K + A   + N   +E
Sbjct: 85  EENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 1/98 (1%)

Query: 452 KEAMDRAEAKFRHAKEMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGE 511
           +      E + +       R+  +A   +   +    ER   Q A E  +  ++  ++  
Sbjct: 39  RRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKL 98

Query: 512 EQRRLEREREREREEKEREKKRIEKEKERAREIEKERE 549
            Q+    +  RE       ++  EK+K  A E+ K +E
Sbjct: 99  AQKMESNKENREAHLAAMLERLQEKDK-HAEEVRKNKE 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	965
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.8
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	97.83
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	97.81
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	97.34
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	97.29
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	97.01
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	96.19
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	96.16

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=2.2e-20  Score=170.77  Aligned_cols=90  Identities=41%  Similarity=0.665  Sum_probs=82.1

Q ss_pred             HhHHHHHHHHhccccccHHHHhhccccccCCC-CCCccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHH
Q 002109          817 ETLDVEIKRWAAGKEGNIRALLATMQYVLWPE-SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAE  895 (965)
Q Consensus       817 d~~~~ki~~W~~gke~nIRaLLssL~~VLW~~-~~W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~  895 (965)
                      |.|+.+|..|+.|+++|||+||++|+.|||++ ..|++++|.+++++.+||++|+++++.+||||+...    ....+|+
T Consensus         1 d~~~~~i~~W~~~~~~~ir~lL~~l~~vl~~~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~----~~~~~a~   76 (98)
T d1nz6a_           1 DPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQ----PYEQYAK   76 (98)
T ss_dssp             CHHHHHHHHHHTTTTTCHHHHHTTGGGTSCTTCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTS----TTHHHHH
T ss_pred             ChHHHHHHHHHhcchhhHHHHHHhhhhhcCCcccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCCh----HHHHHHH
Confidence            57888999999999999999999999999985 789999999999999999999999999999998743    2356799


Q ss_pred             HHHHHHHHHHHHhhh
Q 002109          896 KVFDLLKVQQIYCRF  910 (965)
Q Consensus       896 ~vF~~Ln~a~~~~r~  910 (965)
                      .+|..||+||+.|+=
T Consensus        77 ~~f~~I~~Ay~~L~d   91 (98)
T d1nz6a_          77 MIFMELNDAWSEFEN   91 (98)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCC
Confidence            999999999998863

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=6e-06  Score=73.55  Aligned_cols=58  Identities=16%  Similarity=0.108  Sum_probs=47.3

Q ss_pred             CccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109          851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR  909 (965)
Q Consensus       851 W~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r  909 (965)
                      |.-+++..-.+...||++|++.++.+||||+.. ..+.+.+-.|+.+|..|++||.++.
T Consensus        19 Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~-~~~~~~~~~a~~~f~~I~~Ay~vL~   76 (94)
T d1wjza_          19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSA-DVPAGTMEECMQKFIEIDQAWKILG   76 (94)
T ss_dssp             HHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCT-TCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHHHHHHHHHHHhC
Confidence            444556666678999999999999999999875 3566677779999999999998764

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=8e-06  Score=69.68  Aligned_cols=48  Identities=15%  Similarity=0.155  Sum_probs=41.0

Q ss_pred             chhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109          860 ITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR  909 (965)
Q Consensus       860 ~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r  909 (965)
                      ++...||++|++.+..+||||+..  .+...+-+|..+|..||+||+.++
T Consensus        15 ~d~~eIk~aYr~l~~~~HPDk~~~--~~~~~~~~a~~~~~~i~~Ay~vL~   62 (76)
T d1fpoa1          15 LDTQALSLRFQDLQRQYHPDKFAS--GSQAEQLAAVQQSATINQAWQTLR   62 (76)
T ss_dssp             CCHHHHHHHHHHHHHHTCGGGGTT--SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCcccccc--chHHHHHHHHHHHHHHHHHHHHhC
Confidence            567899999999999999999974  445556689999999999998875

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=3.6e-05  Score=67.80  Aligned_cols=52  Identities=29%  Similarity=0.239  Sum_probs=41.2

Q ss_pred             CcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhh
Q 002109          854 VSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFF  911 (965)
Q Consensus       854 v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~  911 (965)
                      +.+..=.+...||++|++.++.+||||...   .   .-.|+.+|..|++||+++.--
T Consensus        22 L~v~~~as~~eIKkAYrrl~~~~HPDk~~~---~---~~~a~~~f~~i~~Ay~~L~~~   73 (88)
T d1iura_          22 VEQAWKLPESERKKIIRRLYLKWHPDKNPE---N---HDIANEVFKHLQNEINRLEKQ   73 (88)
T ss_dssp             HHHTTSSCSHHHHHHHHHHHHHTCTTTSSS---C---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCCCHHHHHHHHHHHHHHhccccccc---h---hhHHHHHHHHHHHHHHHHHHH
Confidence            333334567999999999999999999763   1   346899999999999988643

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=8.5e-05  Score=63.18  Aligned_cols=51  Identities=20%  Similarity=0.316  Sum_probs=39.5

Q ss_pred             ccCcccccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhh
Q 002109          852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCR  909 (965)
Q Consensus       852 ~~v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r  909 (965)
                      .-+++..-.+...||++|+++++.+||||....  .     .++..|..|++||.++.
T Consensus         7 ~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~--~-----~~~~~f~~i~~Ay~vL~   57 (75)
T d1xbla_           7 EILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD--K-----EAEAKFKEIKEAYEVLT   57 (75)
T ss_dssp             TTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTT--C-----HHHHHHHHHHHHHHHTT
T ss_pred             HHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCC--h-----HHHHHHHHHHHHHHhcC
Confidence            445555566889999999999999999998632  1     34667899999988764

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=97.01  E-value=0.00028  Score=60.79  Aligned_cols=46  Identities=15%  Similarity=0.169  Sum_probs=34.6

Q ss_pred             cccchhhhHhHHhhhccccccCccccccCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002109          857 TDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKVQQIYCRFFIL  913 (965)
Q Consensus       857 ~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~iA~~vF~~Ln~a~~~~r~~~~  913 (965)
                      ..-++...||++|++.++.+||||.    .+.+       .|..||+||+.++-.+.
T Consensus        22 ~~~~~~~~IkkaYr~l~~~~HPDk~----g~~e-------~~~~in~Ay~~L~d~~~   67 (79)
T d1fafa_          22 QLWGDFGRMQQAYKQQSLLLHPDKG----GSHA-------LMQELNSLWGTFKTEVY   67 (79)
T ss_dssp             SSTTCHHHHHHHHHHHHHHSSGGGS----CCHH-------HHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhCcccC----CCHH-------HHHHHHHHHHHHCCHHH
Confidence            3345778999999999999999994    2322       47788888877766554

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.00084  Score=57.00  Aligned_cols=56  Identities=23%  Similarity=0.355  Sum_probs=35.3

Q ss_pred             CcccccchhhhHhHHhhhccccccCccccccCCCHHHH-HHHHHHHHHHHHHHHHhhhh
Q 002109          854 VSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQK-YIAEKVFDLLKVQQIYCRFF  911 (965)
Q Consensus       854 v~~~dl~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk-~iA~~vF~~Ln~a~~~~r~~  911 (965)
                      +++..-.+...|+++|+++++.+||||....  ...++ ...+..|.+|.+...+..|-
T Consensus         9 Lgv~~~as~~eIk~ay~~l~~~~hPD~~~~~--~~~~~~~~i~~Ay~vLsdp~~R~~YD   65 (77)
T d1hdja_           9 LGLARGASDEEIKRAYRRQALRYHPDKNKEP--GAEEKFKEIAEAYDVLSDPRKREIFD   65 (77)
T ss_dssp             HTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT--THHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCCCCcCHHHHHHHHHHHHHHhccccccch--hHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            3444556789999999999999999998642  22222 12344455555444444453

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=96.16  E-value=0.0012  Score=60.08  Aligned_cols=47  Identities=19%  Similarity=0.205  Sum_probs=32.2

Q ss_pred             chhhhHhHHhhhccccccCccccccCCCHHHHH-HHHHHHHHHHHHHHHhhhh
Q 002109          860 ITAAAVKKCYRKATLCIHPDKVQQKGANLQQKY-IAEKVFDLLKVQQIYCRFF  911 (965)
Q Consensus       860 ~~~~~VKk~YrKA~l~vHPDK~~~~~~~~eqk~-iA~~vF~~Ln~a~~~~r~~  911 (965)
                      .+...||++|+|..+.+||||...    . ++| .....|.+|.+...+..|-
T Consensus        22 ~~~~~IKkAYrkla~k~HPDk~~~----~-e~F~~I~~AY~vLsd~~kR~~YD   69 (114)
T d1gh6a_          22 GNIPLMRKAYLKKCKEFHPDKGGD----E-EKMKKMNTLYKKMEDGVKYAHQP   69 (114)
T ss_dssp             SCHHHHHHHHHHTTTTCCTTTCCT----T-TTTHHHHHHHHHHHHHHHSCCSS
T ss_pred             CCHHHHHHHHHHHHHHhcccchhh----H-HHHHHHHHHHHHhCCHHHHHHHh
Confidence            355789999999999999999642    2 232 2455566666666555554