Citrus Sinensis ID: 002128
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 962 | 2.2.26 [Sep-21-2011] | |||||||
| Q54NP8 | 1922 | Kinesin-related protein 4 | yes | no | 0.355 | 0.177 | 0.465 | 4e-81 | |
| Q02224 | 2701 | Centromere-associated pro | yes | no | 0.365 | 0.130 | 0.439 | 1e-73 | |
| Q6RT24 | 2474 | Centromere-associated pro | yes | no | 0.389 | 0.151 | 0.414 | 1e-71 | |
| Q6S001 | 685 | Kinesin-related protein 1 | no | no | 0.356 | 0.500 | 0.426 | 1e-70 | |
| O14782 | 793 | Kinesin-like protein KIF3 | no | no | 0.360 | 0.437 | 0.386 | 8e-65 | |
| Q5R706 | 793 | Kinesin-like protein KIF3 | no | no | 0.360 | 0.437 | 0.376 | 7e-64 | |
| O35066 | 796 | Kinesin-like protein KIF3 | no | no | 0.360 | 0.435 | 0.374 | 8e-64 | |
| Q61771 | 747 | Kinesin-like protein KIF3 | no | no | 0.356 | 0.459 | 0.391 | 2e-63 | |
| O15066 | 747 | Kinesin-like protein KIF3 | no | no | 0.356 | 0.459 | 0.391 | 2e-63 | |
| O55165 | 796 | Kinesin-like protein KIF3 | no | no | 0.360 | 0.435 | 0.382 | 2e-63 |
| >sp|Q54NP8|KIF4_DICDI Kinesin-related protein 4 OS=Dictyostelium discoideum GN=kif4 PE=2 SV=1 | Back alignment and function desciption |
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Score = 303 bits (776), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 169/363 (46%), Positives = 231/363 (63%), Gaps = 21/363 (5%)
Query: 35 KIVVTVRLRPLNKREQLAKDQ-VAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCL 93
KI V +R+RPLN RE L DQ + W D TI P+ +F++D VFG
Sbjct: 22 KIKVAIRVRPLNSRE-LGIDQKIPWSISKD-TISLSQNPN------INFTYDYVFGIDSN 73
Query: 94 TETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG------ITEKAVVDIYNHIM 147
T VY K++ S+L GIN TIFAYGQTSSGKT++MRG I + ++ DI+ I
Sbjct: 74 TIDVYNAIAKSIVNSSLNGINGTIFAYGQTSSGKTFSMRGTESIPGIIKLSIKDIFKSIE 133
Query: 148 NTP-ERDFTIKISGLEIYNENVRDLLNS--ESGRNLKLLDDPEKGTVVEKLVEETANNDQ 204
++ E+D+ +K+S LEIYNE ++DLLN + + LK+ +D KG VV L EE +
Sbjct: 134 DSILEKDYLLKVSYLEIYNEEIKDLLNPTISNKKKLKIHEDIYKGVVVANLKEEIVISPD 193
Query: 205 HLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLAG 264
+ L++ E +R +G T +ND+SSRSH I R+ IQST ++N +++L VDLAG
Sbjct: 194 QIFALMNFGEERRHIGSTMMNDSSSRSHTIFRMQIQSTCKQNGTIQ---MSTLTLVDLAG 250
Query: 265 SERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGG 324
SER S T A+G RL+EG HIN SLMTL+ VI KLS K H+PYRDSKLTRILQ SLGG
Sbjct: 251 SERVSSTGAEGVRLKEGTHINKSLMTLSKVISKLSEEKTQQHVPYRDSKLTRILQPSLGG 310
Query: 325 NARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLE 384
N++TAI+CT++PA +H E+S +TL FA RAK V N ++N V ++K + E+ L+
Sbjct: 311 NSKTAILCTITPATTHQEESISTLQFAKRAKRVKTNYKINQVADANTMLKKYESEILELQ 370
Query: 385 AEL 387
+L
Sbjct: 371 NQL 373
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Microtubule-associated force-producing protein that plays a role in organelle transport. Its motor activity is directed toward the microtubule's plus end (By similarity). Cooperates with dynein in organizing spindle assembly during cell division. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q02224|CENPE_HUMAN Centromere-associated protein E OS=Homo sapiens GN=CENPE PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6RT24|CENPE_MOUSE Centromere-associated protein E OS=Mus musculus GN=Cenpe PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6S001|KIF11_DICDI Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1 | Back alignment and function description |
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| >sp|O14782|KIF3C_HUMAN Kinesin-like protein KIF3C OS=Homo sapiens GN=KIF3C PE=1 SV=3 | Back alignment and function description |
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| >sp|Q5R706|KIF3C_PONAB Kinesin-like protein KIF3C OS=Pongo abelii GN=KIF3C PE=2 SV=1 | Back alignment and function description |
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| >sp|O35066|KIF3C_MOUSE Kinesin-like protein KIF3C OS=Mus musculus GN=Kif3c PE=2 SV=3 | Back alignment and function description |
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| >sp|Q61771|KIF3B_MOUSE Kinesin-like protein KIF3B OS=Mus musculus GN=Kif3b PE=1 SV=1 | Back alignment and function description |
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| >sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3B PE=1 SV=1 | Back alignment and function description |
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| >sp|O55165|KIF3C_RAT Kinesin-like protein KIF3C OS=Rattus norvegicus GN=Kif3c PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 962 | ||||||
| 224121262 | 964 | predicted protein [Populus trichocarpa] | 0.991 | 0.989 | 0.844 | 0.0 | |
| 225456008 | 962 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.988 | 0.841 | 0.0 | |
| 224133132 | 965 | predicted protein [Populus trichocarpa] | 0.990 | 0.987 | 0.847 | 0.0 | |
| 449439419 | 960 | PREDICTED: uncharacterized protein LOC10 | 0.986 | 0.988 | 0.818 | 0.0 | |
| 449518553 | 960 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.986 | 0.988 | 0.818 | 0.0 | |
| 356531188 | 962 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.988 | 0.805 | 0.0 | |
| 356520611 | 962 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.988 | 0.803 | 0.0 | |
| 19570247 | 959 | kinesin-like protein NACK1 [Nicotiana ta | 0.985 | 0.988 | 0.805 | 0.0 | |
| 297850238 | 974 | hypothetical protein ARALYDRAFT_472057 [ | 0.988 | 0.976 | 0.782 | 0.0 | |
| 22329653 | 974 | ATP binding microtubule motor family pro | 0.988 | 0.976 | 0.783 | 0.0 |
| >gi|224121262|ref|XP_002318539.1| predicted protein [Populus trichocarpa] gi|222859212|gb|EEE96759.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1657 bits (4291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 818/969 (84%), Positives = 883/969 (91%), Gaps = 15/969 (1%)
Query: 1 MTVRTPGTPASKSERATPTQTPASTPGGPKPREEKIVVTVRLRPLNKREQLAKDQVAWDC 60
MT+RTPGTPASK +R TPA+TPGGPK +EEKIVVTVRLRPLNK+EQLAKDQ+AWDC
Sbjct: 1 MTLRTPGTPASKIDR-----TPATTPGGPKAKEEKIVVTVRLRPLNKKEQLAKDQIAWDC 55
Query: 61 VDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAY 120
VDDHTIV+KP P ER AQP+SF FDKVFGPS +TE VYE+GVKNVALSALMGINATIFAY
Sbjct: 56 VDDHTIVFKPPPQERAAQPASFIFDKVFGPSSITEAVYEDGVKNVALSALMGINATIFAY 115
Query: 121 GQTSSGKTYTMRGITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLNSESGRNL 180
GQTSSGKTYTMRGIT+KAV DIY HIMNTPERDFTI+ISGLEIYNENVRDLLNSESGRNL
Sbjct: 116 GQTSSGKTYTMRGITDKAVNDIYKHIMNTPERDFTIRISGLEIYNENVRDLLNSESGRNL 175
Query: 181 KLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQ 240
KLLDDPEKGTVVEKLVEETA+NDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRL+I+
Sbjct: 176 KLLDDPEKGTVVEKLVEETASNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLTIE 235
Query: 241 STLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSV 300
STLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSV
Sbjct: 236 STLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSV 295
Query: 301 GKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNN 360
GKRSGHIPYRDSKLTRILQHSLGGNA TAIICTLSPAL+H EQSRNTL+FATRAKEVTNN
Sbjct: 296 GKRSGHIPYRDSKLTRILQHSLGGNACTAIICTLSPALTHVEQSRNTLYFATRAKEVTNN 355
Query: 361 AQVNMVVSDKQLVKHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSE 420
A VNMVVSDKQLVKHLQKEVARLEAELRTPDPSREKD KI+QMEME+EEL+RQRD+AQSE
Sbjct: 356 AHVNMVVSDKQLVKHLQKEVARLEAELRTPDPSREKDFKIRQMEMEMEELRRQRDLAQSE 415
Query: 421 VDELRRKLQEDQQTSNPLD---PSVKKCLSYSGVLSPKLDGKELGRFDKIRKTMSRQSMR 477
VDELRRKLQED+Q S+ L+ P VKKCLSYS P LD KE D+ RKT+ RQSMR
Sbjct: 416 VDELRRKLQEDRQVSSTLESPRPLVKKCLSYSDASLPNLDIKESSHCDRTRKTLLRQSMR 475
Query: 478 QSSTAPFTLMHEIRKLEHLQEQLGEEANRALEVLQKEVACHRLGNQDAAETIARLQAEIR 537
QSSTAPFTLMHEIRKLEHLQEQLGEEANRALEVLQKEVACHRLGNQDAAETIA+LQAEIR
Sbjct: 476 QSSTAPFTLMHEIRKLEHLQEQLGEEANRALEVLQKEVACHRLGNQDAAETIAKLQAEIR 535
Query: 538 EMRAVRSVSKEVEVGTVIAPNKSVCANLKEEITRLHSQGSTIEDLEEQLENVQKSIDKLV 597
+MR ++ V KEVE+G+V+APNKSV ANLK+EITRLHSQGST DLEEQLENVQKSIDKLV
Sbjct: 536 DMRTIQPVPKEVEIGSVVAPNKSVNANLKDEITRLHSQGSTFADLEEQLENVQKSIDKLV 595
Query: 598 MSLPTNNQQPDCESTP---KAKKKKKLLPLASSN-VNRQNFIKSPCSPLSTSPQILESET 653
MSLP NN Q +CE+ +KKKK+LPLASSN NRQNFI+SPCSPLSTS Q+LESE
Sbjct: 596 MSLPNNNPQSNCEAASKAKNQQKKKKILPLASSNGTNRQNFIRSPCSPLSTSRQVLESEI 655
Query: 654 ENRPPENDNMAV-ENLPESEKGTPTKSEEGGAVSSREGTPGSGYRRSSSVNMKKMQKMFQ 712
ENR P ND++ V E + ESEK TPTK EEGG +SS+EGTPG GYRRSSSVNMKKMQKMFQ
Sbjct: 656 ENRAPNNDDIVVSETMSESEKETPTKIEEGGDISSKEGTPG-GYRRSSSVNMKKMQKMFQ 714
Query: 713 NAAEENVRSIRAYVTELKERVAKLQYQKQLLVCQVLEMEANEAAGYNMENDETIVETEEP 772
NAAEENVRSIR YVTELKERVAKLQYQKQLLVCQVLE+EANEAAGY +E +E I E E+P
Sbjct: 715 NAAEENVRSIRTYVTELKERVAKLQYQKQLLVCQVLELEANEAAGYTIEEEENINEPEQP 774
Query: 773 EVAWHITFREQRQQIIELWDVCFVSIIHRTQFYLLFKGDPADQIYMEVELRRLTWLQQHL 832
+V+WH+TFREQRQ IIELWD+C+VSIIHRTQFYLLFKGDPADQIYMEVELRRLTWLQQHL
Sbjct: 775 QVSWHVTFREQRQLIIELWDMCYVSIIHRTQFYLLFKGDPADQIYMEVELRRLTWLQQHL 834
Query: 833 SELGNASPLPVAGGEPTISLSSSIRALKREREFLAKRLSSRLTAEERDSLYIKWDVQLDG 892
+ELGNASP G EPTISLSSSIRALKRE+EFLAKRL+SRLTAEERD LYIKW+V LDG
Sbjct: 835 AELGNASPAHF-GDEPTISLSSSIRALKREKEFLAKRLTSRLTAEERDELYIKWNVPLDG 893
Query: 893 KHRRLQFVSKLWTDPHDPRHVQESAEIVAKLVGFCEGGNMSKEMFELNFAIPADKRPWMM 952
K RRLQFV+KLWTDPHD +H+QESA+IVAKLVGFCEGG MSKEMFELNFA+P DKRPW+
Sbjct: 894 KQRRLQFVNKLWTDPHDAKHIQESADIVAKLVGFCEGGKMSKEMFELNFALPTDKRPWIT 953
Query: 953 GWNQISNLL 961
GWNQISN+L
Sbjct: 954 GWNQISNIL 962
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456008|ref|XP_002279228.1| PREDICTED: uncharacterized protein LOC100266348 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224133132|ref|XP_002321490.1| predicted protein [Populus trichocarpa] gi|222868486|gb|EEF05617.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449439419|ref|XP_004137483.1| PREDICTED: uncharacterized protein LOC101215425 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449518553|ref|XP_004166306.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101229623 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356531188|ref|XP_003534160.1| PREDICTED: uncharacterized protein LOC100775206 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356520611|ref|XP_003528955.1| PREDICTED: uncharacterized protein LOC100806354 [Glycine max] | Back alignment and taxonomy information |
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| >gi|19570247|dbj|BAB86283.1| kinesin-like protein NACK1 [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|297850238|ref|XP_002893000.1| hypothetical protein ARALYDRAFT_472057 [Arabidopsis lyrata subsp. lyrata] gi|297338842|gb|EFH69259.1| hypothetical protein ARALYDRAFT_472057 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|22329653|ref|NP_173273.2| ATP binding microtubule motor family protein [Arabidopsis thaliana] gi|19979627|dbj|BAB88748.1| AtNACK1 kinesin-like protein [Arabidopsis thaliana] gi|332191587|gb|AEE29708.1| ATP binding microtubule motor family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 962 | ||||||
| UNIPROTKB|Q8S950 | 959 | nack1 "Kinesin-like protein NA | 0.985 | 0.988 | 0.797 | 0.0 | |
| TAIR|locus:2014069 | 974 | HIK "HINKEL" [Arabidopsis thal | 0.990 | 0.978 | 0.773 | 0.0 | |
| TAIR|locus:2084701 | 938 | TES "TETRASPORE" [Arabidopsis | 0.827 | 0.848 | 0.572 | 2.4e-234 | |
| TAIR|locus:2120272 | 836 | AT4G38950 [Arabidopsis thalian | 0.502 | 0.577 | 0.515 | 3.2e-167 | |
| TAIR|locus:2050115 | 862 | AT2G21300 [Arabidopsis thalian | 0.413 | 0.461 | 0.582 | 9.6e-161 | |
| TAIR|locus:2155051 | 1063 | AT5G66310 [Arabidopsis thalian | 0.418 | 0.379 | 0.575 | 2.6e-158 | |
| TAIR|locus:2135006 | 1004 | AT4G24170 [Arabidopsis thalian | 0.568 | 0.544 | 0.480 | 3e-155 | |
| TAIR|locus:2162351 | 1087 | AT5G42490 [Arabidopsis thalian | 0.274 | 0.242 | 0.578 | 3.4e-117 | |
| TAIR|locus:2144103 | 986 | AT5G06670 [Arabidopsis thalian | 0.485 | 0.473 | 0.365 | 4.1e-79 | |
| TAIR|locus:2202862 | 823 | ZCF125 [Arabidopsis thaliana ( | 0.409 | 0.478 | 0.414 | 1.4e-77 |
| UNIPROTKB|Q8S950 nack1 "Kinesin-like protein NACK1" [Nicotiana tabacum (taxid:4097)] | Back alignment and assigned GO terms |
|---|
Score = 3888 (1373.7 bits), Expect = 0., P = 0.
Identities = 774/970 (79%), Positives = 862/970 (88%)
Query: 1 MTVRTPGTPASKSERATPTQTPASTPGGPKPREEKIVVTVRLRPLNKREQLAKDQVAWDC 60
MTVRTPGTPASK ++ TPA+TP G + REEKIVVTVRLRPLNKRE AKD AW+C
Sbjct: 1 MTVRTPGTPASKIDK-----TPATTPNGHRGREEKIVVTVRLRPLNKRELSAKDHAAWEC 55
Query: 61 VDDHTIVYKPQPHERVAQP-SSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFA 119
+DDHTI+Y+P P ER AQP SSF+FDKVFGP +TE VYEEGVKNVALS+LMGINATIFA
Sbjct: 56 IDDHTIIYRPVPQERAAQPASSFTFDKVFGPDSITEAVYEEGVKNVALSSLMGINATIFA 115
Query: 120 YGQTSSGKTYTMRGITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLNSESGRN 179
YGQTSSGKTYTMRGITEKAV DIY HIM+TPER+F I+ISGLEIYNENVRDLLNSESGR+
Sbjct: 116 YGQTSSGKTYTMRGITEKAVNDIYAHIMSTPEREFRIRISGLEIYNENVRDLLNSESGRS 175
Query: 180 LKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSI 239
LKLLDDPEKGTVVEKLVEETA+NDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRL+I
Sbjct: 176 LKLLDDPEKGTVVEKLVEETASNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLTI 235
Query: 240 QSTLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLS 299
+STLRE+SDCVRS+VASLNFVDLAGSERASQT+ADGARLREGCHINLSLMTLTTVIRKLS
Sbjct: 236 ESTLRESSDCVRSYVASLNFVDLAGSERASQTNADGARLREGCHINLSLMTLTTVIRKLS 295
Query: 300 VGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTN 359
VGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPA SH EQSRNTL+FATRAKEVTN
Sbjct: 296 VGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPASSHVEQSRNTLYFATRAKEVTN 355
Query: 360 NAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQS 419
NAQVNMVVSDKQLVKHLQKEVARLEAELRTPDP+ EKD KIQQMEMEIEELKRQRD+AQS
Sbjct: 356 NAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPANEKDWKIQQMEMEIEELKRQRDLAQS 415
Query: 420 EVDELRRKLQEDQ--QTSNPLDPSVKKCLSYSGVLSPKLDGKELGRFDKIRKTMSRQSMR 477
+VDELRRKLQE+Q + S + P VKKCLS+SG LSP L+ K R ++ R TM RQSMR
Sbjct: 416 QVDELRRKLQEEQGPKPSESVSPVVKKCLSFSGTLSPNLEEKAPVRSERTRNTMGRQSMR 475
Query: 478 QSSTAPFTLMHEIRKLEHLQEQLGEEANRALEVLQKEVACHRLGNQDAAETIARLQAEIR 537
QS APFTLMHEIRKLEHLQEQLG+EANRALEVLQKEVACHRLGNQDAAETIA+LQAEIR
Sbjct: 476 QSLAAPFTLMHEIRKLEHLQEQLGDEANRALEVLQKEVACHRLGNQDAAETIAKLQAEIR 535
Query: 538 EMRAVRSVSKEVEVGTVIAPNKSVCANLKEEITRLHSQGSTIEDLEEQLENVQKSIDKLV 597
EMR++R + KEVEVG+V+A NKSV ANLKEEI RLHSQGSTI DLEEQLENVQKS+DKLV
Sbjct: 536 EMRSIRPLPKEVEVGSVVAVNKSVSANLKEEIARLHSQGSTIADLEEQLENVQKSLDKLV 595
Query: 598 MSLPTNN-QQPDCESTXXXXXXXXXXXX---XSSN-VNRQNFIKSPCSPLSTSPQILESE 652
MSLP+NN QQ + ++T SSN +NRQNF+KSPCSPLST+ Q+L+ E
Sbjct: 596 MSLPSNNDQQSNNDTTQKAKHPSKKKKLLPLTSSNSINRQNFLKSPCSPLSTARQVLDCE 655
Query: 653 TENRPPENDNMAVENLPESEKGTPTKSEEGGAVSSREGTPGSGYRRSSSVNMKKMQKMFQ 712
ENR P++D+++ E P+ TPTKS+ GG VSS+EGTP YRRSSSVNM+KMQKMFQ
Sbjct: 656 VENRAPDSDDLSCEIQPDE---TPTKSD-GGDVSSKEGTP---YRRSSSVNMRKMQKMFQ 708
Query: 713 NAAEENVRSIRAYVTELKERVAKLQYQKQLLVCQVLEMEANEAAGYNMENDETIVET-EE 771
AAEENVR+IR+YVTELKERVAKLQYQKQLLVCQVLE+EANEAAGYN+E+DE I + EE
Sbjct: 709 EAAEENVRNIRSYVTELKERVAKLQYQKQLLVCQVLELEANEAAGYNLEDDENIHQIPEE 768
Query: 772 PEVAWHITFREQRQQIIELWDVCFVSIIHRTQFYLLFKGDPADQIYMEVELRRLTWLQQH 831
V+W ITF+EQRQQII+LWDVC+VSIIHR+QFYLLFKGDPAD+IY+EVELRRLTWLQQH
Sbjct: 769 SPVSWQITFKEQRQQIIDLWDVCYVSIIHRSQFYLLFKGDPADEIYLEVELRRLTWLQQH 828
Query: 832 LSELGNASPLPVAGGEPTISLSSSIRALKREREFLAKRLSSRLTAEERDSLYIKWDVQLD 891
L+ELGNA+P V G EPT+SLSSSIRALKREREFLAKRL++RLTAEERD LYIKW+V L+
Sbjct: 829 LAELGNATPARV-GNEPTVSLSSSIRALKREREFLAKRLTTRLTAEERDYLYIKWEVPLE 887
Query: 892 GKHRRLQFVSKLWTDPHDPRHVQESAEIVAKLVGFCEGGNMSKEMFELNFAIPADKRPWM 951
GK RR+QF++KLWT+PHD +HV ESAEIVAKLVGFCEGGNMS+EMFELNF +P+D+RPW
Sbjct: 888 GKQRRMQFINKLWTNPHDAKHVHESAEIVAKLVGFCEGGNMSREMFELNFVLPSDRRPWF 947
Query: 952 MGWNQISNLL 961
GWNQIS+LL
Sbjct: 948 AGWNQISDLL 957
|
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| TAIR|locus:2014069 HIK "HINKEL" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2084701 TES "TETRASPORE" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2120272 AT4G38950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2050115 AT2G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2155051 AT5G66310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2135006 AT4G24170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2162351 AT5G42490 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2144103 AT5G06670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2202862 ZCF125 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_LG_XII000450 | hypothetical protein (964 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 962 | |||
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 1e-157 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 1e-125 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 1e-123 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 1e-113 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 8e-93 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 3e-92 | |
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 9e-91 | |
| pfam11995 | 162 | pfam11995, DUF3490, Domain of unknown function (DU | 3e-90 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 1e-87 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 7e-86 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 1e-85 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 3e-84 | |
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 8e-79 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 7e-69 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 4e-68 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 2e-64 | |
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 2e-58 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 5e-53 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 8e-51 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 1e-34 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 8e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.003 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 0.003 | |
| PRK05431 | 425 | PRK05431, PRK05431, seryl-tRNA synthetase; Provisi | 0.003 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 0.004 |
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
Score = 465 bits (1199), Expect = e-157
Identities = 180/329 (54%), Positives = 222/329 (67%), Gaps = 14/329 (4%)
Query: 35 KIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLT 94
KI V+VR+RPLN RE +QVAW +D+TI + SF+FD+VFG
Sbjct: 1 KIKVSVRVRPLNPRE-SDNEQVAWSIDNDNTISLEESTP-----GQSFTFDRVFGGESTN 54
Query: 95 ETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMN 148
VYE K V SAL G N TIFAYGQTSSGKT+TM GI AV DI+ I +
Sbjct: 55 REVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQD 114
Query: 149 TPERDFTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVVEKLVEETANNDQHLRH 208
TP+R+F +++S LEIYNE ++DLL+ S + L++ +DP KG VV L EE + +HL
Sbjct: 115 TPDREFLLRVSYLEIYNEKIKDLLSP-SPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQ 173
Query: 209 LISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLAGSERA 268
LI+ E R VGET N+ SSRSH I +L+I+S R +S+ V++LN +DLAGSERA
Sbjct: 174 LIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERA 233
Query: 269 SQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNART 328
SQT A G R +EG IN SL+TL TVI KLS GK SGHIPYRDSKLTRILQ SL GNART
Sbjct: 234 SQTGA-GERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNART 292
Query: 329 AIICTLSPALSHFEQSRNTLFFATRAKEV 357
AIICT+SPA SH E++ NTL FA+RAK+V
Sbjct: 293 AIICTISPASSHVEETLNTLKFASRAKKV 321
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This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321 |
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
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| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
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| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
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| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
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| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
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| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >gnl|CDD|221365 pfam11995, DUF3490, Domain of unknown function (DUF3490) | Back alignment and domain information |
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| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
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| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
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| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
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| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
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| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
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| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
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| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
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| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
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| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
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| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
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| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
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| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
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| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
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| >gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional | Back alignment and domain information |
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| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 962 | |||
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| PF11995 | 161 | DUF3490: Domain of unknown function (DUF3490); Int | 100.0 | |
| KOG0245 | 1221 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG4280 | 574 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0242 | 675 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| KOG0241 | 1714 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0247 | 809 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 97.79 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 95.33 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 93.53 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 91.38 | |
| PRK06620 | 214 | hypothetical protein; Validated | 88.99 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 88.64 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 88.35 | |
| PRK12377 | 248 | putative replication protein; Provisional | 88.29 | |
| PRK06526 | 254 | transposase; Provisional | 87.89 | |
| PRK08116 | 268 | hypothetical protein; Validated | 87.19 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 86.28 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 86.24 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 86.09 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 86.05 | |
| PRK09087 | 226 | hypothetical protein; Validated | 85.76 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 85.61 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 85.11 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 84.37 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 83.97 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 83.25 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 82.91 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 82.2 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 81.81 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 81.58 | |
| PRK08181 | 269 | transposase; Validated | 81.27 | |
| PRK08727 | 233 | hypothetical protein; Validated | 81.25 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 81.17 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 81.05 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 80.94 | |
| PRK10884 | 206 | SH3 domain-containing protein; Provisional | 80.3 |
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-87 Score=799.07 Aligned_cols=396 Identities=38% Similarity=0.583 Sum_probs=347.5
Q ss_pred CCCCCCeEEEEecCCCChhhhhcCCceEEEecC-CcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHH
Q 002128 30 KPREEKIVVTVRLRPLNKREQLAKDQVAWDCVD-DHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALS 108 (962)
Q Consensus 30 ~~~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~-~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~s 108 (962)
+..+.+|+|+|||||++.+|.......++.|.+ ...|.+...... ....+.|+||+||||.+.|.+||+.++.|+|..
T Consensus 45 ~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~s-k~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~e 123 (1041)
T KOG0243|consen 45 KEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIAS-KQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKE 123 (1041)
T ss_pred CCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEeccccc-ccccceeecceeeCcchhHHHHHHHHHHHHHHH
Confidence 445568999999999999999999999999988 454666544121 123689999999999999999999999999999
Q ss_pred HhcCCceeEEEeccCCCCCccccc--------------CCchHHHHHHHHHHhcCCCCceEEEeeeEEEecccccccccC
Q 002128 109 ALMGINATIFAYGQTSSGKTYTMR--------------GITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLNS 174 (962)
Q Consensus 109 vl~G~N~tIfAYGqTGSGKTyTM~--------------Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~DLL~~ 174 (962)
|+.|||||||||||||+||||||. |||||++.+||+.+.... .+|+|+|||+|+|||.++|||++
T Consensus 124 Vl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~-~EYsvKVSfLELYNEEl~DLLa~ 202 (1041)
T KOG0243|consen 124 VLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG-AEYSVKVSFLELYNEELTDLLAS 202 (1041)
T ss_pred HhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC-CeEEEEEEehhhhhHHHHHhcCC
Confidence 999999999999999999999995 599999999999997764 79999999999999999999998
Q ss_pred CCC--CcceeeeCC-----CCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCC
Q 002128 175 ESG--RNLKLLDDP-----EKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENS 247 (962)
Q Consensus 175 ~~~--~~L~i~ed~-----~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~ 247 (962)
... ..+++.+++ .+|++|.|+.++.|.++.++..+|..|...|++++|.||..|||||+||+|+|........
T Consensus 203 ~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~ 282 (1041)
T KOG0243|consen 203 EDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPE 282 (1041)
T ss_pred ccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCc
Confidence 765 456666655 6899999999999999999999999999999999999999999999999999976544443
Q ss_pred CcceeEEEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCc
Q 002128 248 DCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNAR 327 (962)
Q Consensus 248 ~~~~~~~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNsk 327 (962)
+..-...|+|+||||||||.++++|+.+.|.+|++.||+||++||+||.||.+ +.+|||||+|||||||||||||.++
T Consensus 283 geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe--~s~HIPYRESKLTRLLQDSLGGkTK 360 (1041)
T KOG0243|consen 283 GEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVE--HSGHIPYRESKLTRLLQDSLGGKTK 360 (1041)
T ss_pred chhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHc--cCCCCCchHHHHHHHHHHHhCCCce
Confidence 33345679999999999999999999999999999999999999999999997 5679999999999999999999999
Q ss_pred cceeeccCCCCcchHHHHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCCh----------hHH
Q 002128 328 TAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPSR----------EKD 397 (962)
Q Consensus 328 T~mI~tISPs~~~~eETlsTLrFAsRAk~Ikn~~~vN~~~~~~~li~~LqkEi~~Le~eL~~~~~~~----------~ke 397 (962)
|+|||||||+..+++||++||.||.|||.|+|+|.+|..+..+.+++.|-.||++|+.+|...+... ..+
T Consensus 361 T~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e 440 (1041)
T KOG0243|consen 361 TCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEE 440 (1041)
T ss_pred eEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998765431 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 398 LKIQQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 398 ~~iq~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
.+.+.+...|+++..+++.+..++.++...+.
T Consensus 441 ~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 441 KEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23455666667777777777766666666554
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| >PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
| >KOG0245 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4280 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0242 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
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| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >KOG0241 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0247 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
| >PRK10884 SH3 domain-containing protein; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 962 | ||||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 8e-70 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-60 | ||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-59 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 1e-57 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 3e-55 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 4e-53 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 5e-53 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 5e-53 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 7e-52 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 8e-52 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 9e-52 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 9e-52 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 9e-52 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 9e-52 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 1e-51 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 2e-51 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 1e-50 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 9e-50 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 1e-49 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 1e-49 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 3e-49 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 8e-49 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 2e-48 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 2e-48 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 6e-48 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 1e-47 | ||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 6e-47 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 2e-46 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 3e-45 | ||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 1e-44 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 7e-42 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 8e-40 | ||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 9e-40 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 2e-39 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 2e-39 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 2e-39 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 4e-39 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 5e-39 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 1e-38 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 9e-38 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 3e-37 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 3e-36 | ||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 9e-36 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 5e-35 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 5e-35 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 1e-34 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 3e-34 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 3e-34 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 3e-34 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 3e-34 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 4e-34 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 5e-34 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 3e-33 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 4e-30 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 3e-27 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 7e-27 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 1e-14 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 2e-14 |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
|
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
Score = 490 bits (1263), Expect = e-167
Identities = 149/355 (41%), Positives = 205/355 (57%), Gaps = 17/355 (4%)
Query: 32 REEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPS 91
E + V VR+RPLN RE+ + D+ ++Y+ SF+FD+VF +
Sbjct: 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDG------SKSFNFDRVFHGN 55
Query: 92 CLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM------RGITEKAVVDIYNH 145
T+ VYEE + SA+ G N TIFAYGQT+SGKTYTM G+ +A+ DI+
Sbjct: 56 ETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQK 115
Query: 146 IMNTPERDFTIKISGLEIYNENVRDLLN-SESGRNLKLLDDPEKGTVVEKLVEETANNDQ 204
I P+R+F +++S +EIYNE + DLL ++ + L + +D + V L EE +
Sbjct: 116 IKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSE 175
Query: 205 HLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSF--VASLNFVDL 262
I+ E R GET +N SSRSH I R+ ++S + V+ LN VDL
Sbjct: 176 MALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDL 235
Query: 263 AGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSL 322
AGSERA+QT A G RL+EGC+IN SL L VI+KLS G+ G I YRDSKLTRILQ+SL
Sbjct: 236 AGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSL 295
Query: 323 GGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQ 377
GGNA+T IICT++P F+++ L FA+ AK + N VN V +D+ H
Sbjct: 296 GGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDELEHHHHH 348
|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 962 | |||
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 100.0 | |
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 100.0 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 100.0 | |
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 100.0 | |
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 100.0 | |
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 100.0 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 100.0 | |
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 100.0 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 100.0 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 100.0 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 100.0 | |
| 2owm_A | 443 | Nckin3-434, related to kinesin-like protein KIF1C; | 100.0 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 100.0 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 100.0 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 100.0 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 100.0 | |
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 100.0 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 100.0 | |
| 1ry6_A | 360 | Internal kinesin; kinesin motor domain, nucleotide | 100.0 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 100.0 | |
| 2rep_A | 376 | Kinesin-like protein KIFC1; structural genomics co | 100.0 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 100.0 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 100.0 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 100.0 | |
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 100.0 | |
| 4h1g_A | 715 | Maltose binding protein-cakar3 motor domain fusio; | 100.0 | |
| 2kin_B | 100 | Kinesin; motor protein, cytoskeleton; HET: ADP; 2. | 99.96 | |
| 3kin_B | 117 | Kinesin heavy chain; motor protein, cytoskeleton; | 99.95 | |
| 2o0a_A | 298 | S.cerevisiae chromosome XVI reading frame ORF YPL2 | 99.87 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 92.9 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 91.28 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 89.4 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 84.08 | |
| 4etp_B | 333 | Spindle POLE BODY-associated protein VIK1; kinesin | 81.38 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 81.14 | |
| 3nmd_A | 72 | CGMP dependent protein kinase; leucine zipper, coi | 80.37 |
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-85 Score=735.47 Aligned_cols=344 Identities=38% Similarity=0.586 Sum_probs=290.2
Q ss_pred CCCCeEEEEecCCCChhhhhcCCceEEEecC-CcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHh
Q 002128 32 REEKIVVTVRLRPLNKREQLAKDQVAWDCVD-DHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSAL 110 (962)
Q Consensus 32 ~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~-~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl 110 (962)
..++|+|+|||||+++.|...+...++.+.. +.++.+..+........+.|.||+||+++++|++||+.++.|+|++++
T Consensus 19 ~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l 98 (372)
T 3b6u_A 19 SSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVL 98 (372)
T ss_dssp --CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHHHh
Confidence 4578999999999999998877766665543 456666554433234468999999999999999999999999999999
Q ss_pred cCCceeEEEeccCCCCCccccc---------CCchHHHHHHHHHHhcCCCCceEEEeeeEEEecccccccccCCCCCcce
Q 002128 111 MGINATIFAYGQTSSGKTYTMR---------GITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLNSESGRNLK 181 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM~---------Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~DLL~~~~~~~L~ 181 (962)
+|||+||||||||||||||||. ||+|+++.+||..+.......|.|+|||+|||||+|||||++.....+.
T Consensus 99 ~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~ 178 (372)
T 3b6u_A 99 QGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLE 178 (372)
T ss_dssp TTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTTCCBC
T ss_pred CCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCCCCce
Confidence 9999999999999999999994 6899999999999998888899999999999999999999987767899
Q ss_pred eeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEe
Q 002128 182 LLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVD 261 (962)
Q Consensus 182 i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVD 261 (962)
+++++.+|++|.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|++......+......|+|+|||
T Consensus 179 i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~skL~lVD 258 (372)
T 3b6u_A 179 LKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVD 258 (372)
T ss_dssp EEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEEEEEEE
T ss_pred EEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999998865433333445689999999
Q ss_pred cCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcch
Q 002128 262 LAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHF 341 (962)
Q Consensus 262 LAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~ 341 (962)
||||||..++++.|.|++|+.+||+||++||+||.+|+.+ +..||||||||||+||||+|||||+|+|||||||+..++
T Consensus 259 LAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~ 337 (372)
T 3b6u_A 259 LAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDG-KSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNV 337 (372)
T ss_dssp CCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC----CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGGH
T ss_pred CCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcC-CCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccCH
Confidence 9999999999999999999999999999999999999976 456999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccccCHHHHHHHHH
Q 002128 342 EQSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQ 377 (962)
Q Consensus 342 eETlsTLrFAsRAk~Ikn~~~vN~~~~~~~li~~Lq 377 (962)
+||++||+||+|||+|+|+|.+|+.+.+ +++++||
T Consensus 338 ~ETlsTLrfA~rak~I~n~~~~n~~~~~-~~~~~~~ 372 (372)
T 3b6u_A 338 EETLTTLRYANRAKNIKNKPRVNEDPKD-ALLREFQ 372 (372)
T ss_dssp HHHHHHHHHHHHHTTCBCCCCCCC------------
T ss_pred HHHHHHHHHHHHHhhccccceecCChHH-HHHHhcC
Confidence 9999999999999999999999998654 5555553
|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
| >4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
| >4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 962 | ||||
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 8e-77 | |
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 5e-74 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 4e-73 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 4e-72 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 5e-71 | |
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 2e-70 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 4e-70 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 6e-68 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 4e-58 |
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Neurospora crassa [TaxId: 5141]
Score = 253 bits (646), Expect = 8e-77
Identities = 127/365 (34%), Positives = 190/365 (52%), Gaps = 25/365 (6%)
Query: 33 EEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSC 92
I V R RP N+ E + Q T + + SF+FD+VF SC
Sbjct: 4 ANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQG-----SFTFDRVFDMSC 58
Query: 93 LTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM----------RGITEKAVVDI 142
+++ +K L G N T+FAYGQT +GK+YTM RG+ + V I
Sbjct: 59 KQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQI 118
Query: 143 YNHIMNTPE-RDFTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVVEKLVEETAN 201
+ I+++ ++T+++S +EIY E +RDLL ++ NL + ++ +G V+ L+E +
Sbjct: 119 FTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQN-DNLPVHEEKNRGVYVKGLLEIYVS 177
Query: 202 NDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVD 261
+ Q + ++ R V T +N SSRSH I ++I E L VD
Sbjct: 178 SVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQ---LFLVD 234
Query: 262 LAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHS 321
LAGSE+ +T A G L E IN SL L VI L+ GK S H+PYRDSKLTRILQ S
Sbjct: 235 LAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSS-HVPYRDSKLTRILQES 293
Query: 322 LGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVA 381
LGGN+RT +I SP+ + ++ +TL F RAK + N A+VN +S + L++ +A
Sbjct: 294 LGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAE----LKQMLA 349
Query: 382 RLEAE 386
+ + +
Sbjct: 350 KAKTQ 354
|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 962 | |||
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.79 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.74 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 87.78 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 82.76 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 82.72 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 81.26 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 80.77 |
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin heavy chain-like protein species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=3.5e-77 Score=667.21 Aligned_cols=340 Identities=35% Similarity=0.525 Sum_probs=295.5
Q ss_pred CeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHhcCCc
Q 002128 35 KIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGIN 114 (962)
Q Consensus 35 ~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N 114 (962)
+|+|+|||||+.+.|...+....+.+.++.++....... .++.|.||+||+++++|++||+. +.|+|+++++|||
T Consensus 1 rIkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~----~~~~f~FD~vf~~~~~q~~vy~~-v~~lv~~~l~G~n 75 (364)
T d1sdma_ 1 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDD----KAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYN 75 (364)
T ss_dssp CCEEEEEECCCCHHHHHTTCCBCEEECSTTEEEEECSSS----SEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCE
T ss_pred CeEEEEEcCCCChhhcccCCCCeEEeCCCCeEEecCCCC----CceEEECCeecCCCCCHHHHHHH-HHHHHHHHhcCCc
Confidence 699999999999999888887888888888877654422 35799999999999999999997 5899999999999
Q ss_pred eeEEEeccCCCCCccccc------CCchHHHHHHHHHHhcCC-CCceEEEeeeEEEecccccccccCCCC--CcceeeeC
Q 002128 115 ATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMNTP-ERDFTIKISGLEIYNENVRDLLNSESG--RNLKLLDD 185 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~~~-~~~f~V~vS~lEIYnE~V~DLL~~~~~--~~L~i~ed 185 (962)
+||||||||||||||||+ |++|+++.+||..+.... ...|.|++||+|||||+|||||.+... ..+.++++
T Consensus 76 ~~i~aYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~~~ 155 (364)
T d1sdma_ 76 VCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKD 155 (364)
T ss_dssp EEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEEEC
T ss_pred eeeeccccCCCCcccccccCccccchhHHHHHHHHhhhhhccccccceEEEEEEEEeccccccccCcccccccccceeec
Confidence 999999999999999996 799999999999997654 467999999999999999999987654 35788999
Q ss_pred CCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEecCCC
Q 002128 186 PEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLAGS 265 (962)
Q Consensus 186 ~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVDLAGS 265 (962)
+.++++|.|++++.|.+++++..++..|..+|.+++|.+|..|||||+||+|+|.+..... .....++|+|||||||
T Consensus 156 ~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~---~~~~~~kl~~vDLAGs 232 (364)
T d1sdma_ 156 SKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT---QAIARGKLSFVDLAGS 232 (364)
T ss_dssp TTSCEEEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETTT---CCEEEEEEEEEECCCC
T ss_pred ccCccccccceeeeeCCHHHHHHHhhccceeeccccccccccccccceEEEEEEEEeccCc---ceeeeEEEEeechhhc
Confidence 9999999999999999999999999999999999999999999999999999998865433 3456799999999999
Q ss_pred ccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcchHHHH
Q 002128 266 ERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSR 345 (962)
Q Consensus 266 ER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~eETl 345 (962)
||..++++.|.+++|+.+||+||++|++||.+|+.+ ..||||||||||+||+|+|||||+|+|||||||+..+++||+
T Consensus 233 Er~~~~~~~g~~~~E~~~iN~SL~~L~~vi~aL~~~--~~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl 310 (364)
T d1sdma_ 233 ERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSG--NQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETH 310 (364)
T ss_dssp SCCCC---------CCCTTCHHHHHHHHHHHHHHHT--CSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHH
T ss_pred cccccccccCceeeeccccccchhhHHHHHHHHHcC--CCcCCchhhhhhHHHHhhcCCCceEEEEEEeCCCcchHHHHH
Confidence 999999999999999999999999999999999975 459999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHh
Q 002128 346 NTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAEL 387 (962)
Q Consensus 346 sTLrFAsRAk~Ikn~~~vN~~~~~~~li~~LqkEi~~Le~eL 387 (962)
+||+||+||++|+|+|.+|+... .+.+|+++++.|+.++
T Consensus 311 ~TL~fa~~ak~i~n~p~~n~~~~---~~~~l~~~i~~l~~~~ 349 (364)
T d1sdma_ 311 NSLTYASRVRSIVNDPSKNVSSK---EVARLKKLVSYWKEQA 349 (364)
T ss_dssp HHHHHHHHHTTCCCCCCCCEECH---HHHHHHTTTTCC----
T ss_pred HHHHHHHHHhhcccCCcccCCHH---HHHHHHHHHHHHHHHH
Confidence 99999999999999999997642 3456666666666554
|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|