Citrus Sinensis ID: 002129

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960--
Protein Sequence
MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLLTHIPRVEISGKWVFDD
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHccEEEEEccccccccccccccEEEEEEEEccccccccccccccccccEEEEcccccccccccccccHHHHcccccccEEEEEcccccccccccccccccccEEEccccccccccccccccccccEEEcccccccHHHHHHccccccccEEEcccccccccccccccccccccccccEEEcccccccHHHcccccccccEEEEcccccccccHHHHHccccccccccEEEEEEcccccccccHHHHHHHHccccccccccEEEEEccccccccccccccccccEEEEEEEccccccccccccccccccEEEEccccccEEEcccccccccccccccccEEEccccccccccccccccccccccccccEEEEccccccccccccccccccEEEEEcccccccccccccccEEEEEcccccEEEEccccccccccEEEEccccccccccccccccccccccEEEcccccccccccccccccccccccEEEccccccccccccccccHHHccccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEccccccccccccccccccccccEEEEEccccccccccccccccccEEEEEccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccEEEEEEcccccccHHHcccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEEEEcccccccccccccccccEEEEEccccccccccccccccccEEEEcccHHHHHHHHHccccccccccccEEEEEcccccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEEccHHHHHHHcccccccccccccccEEEEccEEEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHccEEEEEEcccccccccccccccEEEEEEccccccccccccHHHHHcccEEEEcccccccccHHHHHHHHHHHHcccEEEEEEccccccccccccccccHEEEEEcccccHcccccHHHHHHHHHHHHHcccHHHHHccHcHcccccccEEEccccccHHcccccccccccccEccEEEEcccccccHHHHHHHHHcccEEEEccccccccHHHHHHHcHHccccccEEEEEEccccccccccHHHHHHHHHcccccccEEEEEEcccccccccccccccHHHcEEEEEcccccccccccccccccccEEEEcccccEEEccHHHcccccccccccccEEEEccHHHHHHHccccccccccccccHcEEEEccccHHccccccHccccEEEEEccccccccccccccccEEEEEccccccEccccccccccccEEEEEccccccccccccccccccccEEEEEccccccccccccccccccccccEEEEccccccccccccccccccccccccccEEEEccccccccccccccccccccEEEEcccccccccccccccccccEEEEccccccccccHHHcccccccccEEEEcccccccccccccccccccEEEEcccccHccccHHHccccccccccccccccEEEccccccccccccccccccHHHHcccccccccccEEEEcccccHccccHHccccccccEEEEcccccHccccccccccccccEEEEccccccccccccccccccccEEEEcccHcHcccccHccccccccEEEEcccccccccccccccccccEEEEcccHHHHHHHHHHHccccccccccEEEEcccccccccccHHcccccccccccccccccEEEEcccccHHcccHHccccccccEEEEcccccHcccccccccccccEEEEcccHHHHHHHHcccccccccEEEccEEEEcccEEccc
Coil and Loop (DISEMBL)
MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIrgdydgvqrfgdlydiQHLRTFLPvilsnskpgylapsmlpkllklqSLRVFSLrgyrilelpdsvgdlrYLRYLNlsgteirtlpESVSKLYNLHSLLLEDCDRLEKLCADMGnlvklhhlknsntksleempvgigRLTCLQTLCSFvvgkdsgsglRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEmgvldmlkphtnleqfcikgyggmkfptwlgdssfsklvtlkfkncdmctalpsvgqlpslkhltvRGMSKvkrlgsefygddspipfprletlrfedlqewedsiphgssqgverfpkLRELRILRCSKlkgtfpehlpALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWesatghlgsqnsvvcrdtsnqvflagplkpqlpKLEELILSTKEQTYIWKShdgllqdvcslksleirscpklqsLVAEEEKDQQQQLYELLEYLRLSYCEGlvklpqsslslsslreIEIYGCrslvsfpevalpsklkkIEISSCDalkslpeawmcdtnssleileisgcdsltyiagvqlppslkrlkichcdnirtltveegiqcssgrrytSSLLEhleiyscpsltcifsknelpatleslevgnlppsLKLLLVWGCSKLESIAEMLdnntslekinisgcgnlqtlpsglhnlCQLQEISiascgnlvsspegglpcAKLAMLAIYNCKRLEALPKGLHNLKSLQElrigkgvalpsleedglptnLHVLLINGNMEIWKSMIERgrgfhrfsslrqltimncdddmvsfppkaddkgsgtvlplpasltylriegfpnlerlTSSIVDLqnltglvlgncpklkyfpekglpssllqlsinrcplieekcrkdggQYWDLLthiprveisgkwvfdd
Flexible Loop (DISEMBL)
MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRIlelpdsvgdlrYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVgkdsgsglRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTAlpsvgqlpslkhlTVRGMSKVKRlgsefygddspipfPRLETLRFEDLQEWEdsiphgssqgverfpkLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFlagplkpqlpKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLtveegiqcssgRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLlthiprveisgkwvfdd
Low Complexity Region (SEG)
MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGplkpqlpkleelilSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAeeekdqqqqlyelleylrlSYCEGLVKLPQsslslsslREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLLTHIPRVEISGKWVFDD
Disordered region (IsUnstruct)
*****SDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEW************ERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLV********QQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSF*********GTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLLTHIPRVEISGKWVF**
Disordered Region (DISOPRED)
MHDLVSDLAQWAAGEMYFTMEYTSE*****RFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGS******TEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEE***QQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPE*****TNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTV*************SSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKS*******FHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLLTHIPRVEISGKWVFD*
Disordered Region (DISEMBL)
MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLLTHIPRVEISGKWVFDD
Disordered Region (DISPRO)
*HDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLLTHIPRVEISGKWVFD*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLLTHIPRVEISGKWVFDD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	962	2.2.26 [Sep-21-2011]
Q9LRR5	1424	Putative disease resistan	yes	no	0.913	0.617	0.307	4e-94
Q9LRR4	1054	Putative disease resistan	no	no	0.417	0.381	0.392	8e-72
Q7XA42	979	Putative disease resistan	N/A	no	0.475	0.466	0.302	3e-48
Q7XBQ9	970	Disease resistance protei	N/A	no	0.454	0.450	0.335	1e-44
Q7XA39	988	Putative disease resistan	N/A	no	0.453	0.441	0.316	2e-43
Q7XA40	992	Putative disease resistan	N/A	no	0.486	0.471	0.313	3e-42
P0DI18	1049	Probable disease resistan	no	no	0.355	0.326	0.292	2e-10
P0DI17	1049	Probable disease resistan	no	no	0.355	0.326	0.292	2e-10
Q38834	852	Disease resistance RPP13-	no	no	0.267	0.301	0.282	2e-08
Q9RBS2	1024	Protein PopC OS=Ralstonia	no	no	0.299	0.281	0.259	2e-07

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  346 bits (888), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 311/1013 (30%), Positives = 472/1013 (46%), Gaps = 134/1013 (13%)

Query: 1    MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQH 60
            MHDL++DLA+  +G+  F +E     +         RH S+ R   D    F  +   + 
Sbjct: 487  MHDLMNDLAKAVSGDFCFRLED----DNIPEIPSTTRHFSFSRSQCDASVAFRSICGAEF 542

Query: 61   LRTFLPVILSNSKPGYLAPSML------PKLLKLQSLRVFSLRGYRILELPDSVGDLRYL 114
            LRT LP     + P  L    L      P L  L  LR+ SL  Y+I  LP S+  L+ L
Sbjct: 543  LRTILPF----NSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSLKGLKLL 598

Query: 115  RYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEE 174
            RYL+LS T+I+ LPE V  L NL +LLL +C  L  L   +  L+ L  L    T  L E
Sbjct: 599  RYLDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGTP-LVE 657

Query: 175  MPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLD 234
            MP GI +L  LQ L +FV+G+ SG+GL ELK L+ LRGTL IS L+NV    +A+DA L 
Sbjct: 658  MPPGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLK 717

Query: 235  RKENLKELWLRWTLYGS------YSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTW 288
            RK  L  L L+WT+ GS      ++  A  +  VL ML+PH +L+ FCI+ Y G  FP W
Sbjct: 718  RKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKW 777

Query: 289  LGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFY---GDDSPI 345
            LGDSSF  + ++   +C++C +LP VGQLPSLK+L++   + ++++G +F+    +   +
Sbjct: 778  LGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGV 837

Query: 346  PFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLV 405
            PF  L+ L+F  +  W++ I      G+  FP L++L I RC  L+  FPE LP+   + 
Sbjct: 838  PFQSLQILKFYGMPRWDEWICPELEDGI--FPCLQKLIIQRCPSLRKKFPEGLPSSTEVT 895

Query: 406  IEGCEELLV---------SVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCR----- 451
            I  C    V         S++++P     I S  ++ +  S TG+  S  S   +     
Sbjct: 896  ISDCPLRAVSGGENSFRRSLTNIPESPASIPSMSRREL-SSPTGNPKSDASTSAQPGFAS 954

Query: 452  ----DTSNQV-----FLAGPLKPQLPKLEE-------LILSTKEQTYIWKSHDGLLQDVC 495
                +  N+V       + P   Q    ++       L    +E   I   + G + D+ 
Sbjct: 955  SSQSNDDNEVTSTSSLSSLPKDRQTEDFDQYETQLGSLPQQFEEPAVISARYSGYISDIP 1014

Query: 496  S-----LKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSS 550
            S     +    +   PK +  +       Q   Y +   +        +K  Q     + 
Sbjct: 1015 STLSPYMSRTSLVPDPKNEGSILPGSSSYQYHQYGIKSSVPSPRSSEAIKPSQYDDDETD 1074

Query: 551  LREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDS 610
            +  +++     L+  P+      L+ + I SCD L SLPE  + ++  +L  L I  C S
Sbjct: 1075 MEYLKVTDISHLMELPQ-----NLQSLHIDSCDGLTSLPEN-LTESYPNLHELLIIACHS 1128

Query: 611  LTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEI-YSCPSLTC 669
            L    G   P +LK L I  C   + L   E +Q +  R Y  S LE+L I  SC +L  
Sbjct: 1129 LESFPGSHPPTTLKTLYIRDC---KKLNFTESLQPT--RSY--SQLEYLFIGSSCSNLV- 1180

Query: 670  IFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESI---AEMLDNNTSLEKINISGCGN 726
                   P +L         P L+ L +  C   ++    A + D+  +LE + I  C N
Sbjct: 1181 -----NFPLSLF--------PKLRSLSIRDCESFKTFSIHAGLGDDRIALESLEIRDCPN 1227

Query: 727  LQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLK 786
            L+T                         P+GGLP  KL+ + + NCK+L+ALP+ L  L 
Sbjct: 1228 LETF------------------------PQGGLPTPKLSSMLLSNCKKLQALPEKLFGLT 1263

Query: 787  SLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGR-GFHRFSSLRQLTIM 845
            SL  L I K   + ++   G P+NL  L I+    +   +  R   G     +LR L I 
Sbjct: 1264 SLLSLFIIKCPEIETIPGGGFPSNLRTLCIS----LCDKLTPRIEWGLRDLENLRNLEID 1319

Query: 846  NCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLT-SSIVDLQNLTGLVLGN 904
              ++D+ SFP +           LP S+  LRI  F NL+ L      D + +  + +  
Sbjct: 1320 GGNEDIESFPEEG---------LLPKSVFSLRISRFENLKTLNRKGFHDTKAIETMEISG 1370

Query: 905  CPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLLTHIPRVEISGK 957
            C KL+   ++ LP  L  L I+ C L+ E   +   +++ +L +IP VEI G+
Sbjct: 1371 CDKLQISIDEDLP-PLSCLRISSCSLLTETFAEVETEFFKVL-NIPYVEIDGE 1421

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score =  272 bits (696), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 167/425 (39%), Positives = 244/425 (57%), Gaps = 23/425 (5%)

Query: 1   MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQH 60
           MHD +++LAQ+A+GE     E   ++   +R     R+LSY+R +Y     F  L +++ 
Sbjct: 492 MHDFINELAQFASGEFSSKFEDGCKLQVSER----TRYLSYLRDNYAEPMEFEALREVKF 547

Query: 61  LRTFLPVILSNSKPGYLAPSMLPKLL--KLQSLRVFSLRGYRILELP-DSVGDLRYLRYL 117
           LRTFLP+ L+NS        M+ + L   L  LRV SL  Y+I  LP D   ++ + R+L
Sbjct: 548 LRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNISHARFL 607

Query: 118 NLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPV 177
           +LS TE+  LP+S+  +YNL +LLL  C  L++L  D+ NL+ L +L    TK L +MP 
Sbjct: 608 DLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGTK-LRQMPR 666

Query: 178 GIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKE 237
             GRL  LQTL +F V    GS + EL  L  L G L I  L+ V  + DA +A L+ K+
Sbjct: 667 RFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAEANLNSKK 726

Query: 238 NLKELWLRWTLYGSYSREAET-------EMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLG 290
           +L+E+   W   GS S E  T       E  V + L+PH ++E+  I+ Y G +FP WL 
Sbjct: 727 HLREIDFVWRT-GSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFPDWLS 785

Query: 291 DSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGD------DSP 344
           D SFS++V ++ + C  CT+LPS+GQLP LK L + GM  ++ +G +FY           
Sbjct: 786 DPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFYFSDQQLRDQDQ 845

Query: 345 IPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEML 404
            PF  LETLRF++L +W++ +    ++G + FP L++L ILRC +L GT P  LP+L  L
Sbjct: 846 QPFRSLETLRFDNLPDWQEWLDVRVTRG-DLFPSLKKLFILRCPELTGTLPTFLPSLISL 904

Query: 405 VIEGC 409
            I  C
Sbjct: 905 HIYKC 909

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score =  194 bits (492), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 181/599 (30%), Positives = 264/599 (44%), Gaps = 142/599 (23%)

Query: 1   MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDG-VQRFGDLYDIQ 59
           MHDL+ DLA        F+   +S             ++  I  +YDG +   G      
Sbjct: 472 MHDLIHDLAT-----SLFSANTSSS------------NIREINANYDGYMMSIG------ 508

Query: 60  HLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNL 119
               F  V+ S S      PS+L K +   SLRV +LR   + +LP S+GDL +LRYL+L
Sbjct: 509 ----FAEVVSSYS------PSLLQKFV---SLRVLNLRNSNLNQLPSSIGDLVHLRYLDL 555

Query: 120 SGT-EIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVG 178
           SG   IR LP+ + KL NL +L L  CD L  L      L  L +L      SL   P  
Sbjct: 556 SGNFRIRNLPKRLCKLQNLQTLDLHYCDSLSCLPKQTSKLGSLRNLLLDGC-SLTSTPPR 614

Query: 179 IGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKEN 238
           IG LTCL++L  FV+GK  G  L ELK L  L G++ I+ L+ VK   DA++A L  K N
Sbjct: 615 IGLLTCLKSLSCFVIGKRKGHQLGELKNLN-LYGSISITKLDRVKKDTDAKEANLSAKAN 673

Query: 239 LKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLV 298
           L  L L W L G +  ++E    VL+ LKPH+NL+   I G+GG++ P W+  S    +V
Sbjct: 674 LHSLCLSWDLDGKHRYDSE----VLEALKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVV 729

Query: 299 TLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDL 358
           +++ + C+ C+ LP  G+LP L+ L +   S                           D+
Sbjct: 730 SIRIRGCENCSCLPPFGELPCLESLELHTGSA--------------------------DV 763

Query: 359 QEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFP----EHLPALEMLVIEGCEELLV 414
           +  ED++  G      RFP LR+L I   S LKG       +  P LE +    C   ++
Sbjct: 764 EYVEDNVHPG------RFPSLRKLVIWDFSNLKGLLKMEGEKQFPVLEEMTFYWCPMFVI 817

Query: 415 SVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELI 474
              S     K I++                 ++ V R  SN                   
Sbjct: 818 PTLSSVKTLKVIVT-----------------DATVLRSISN------------------- 841

Query: 475 LSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSY 534
                              + +L SL+I    +  SL  E  K         L+YL++S+
Sbjct: 842 -------------------LRALTSLDISDNVEATSLPEEMFKSLAN-----LKYLKISF 877

Query: 535 CEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALP--SKLKKIEISSCDALKSLPEA 591
              L +LP S  SL++L+ ++   C +L S PE  +   + L ++ +S+C  LK LPE 
Sbjct: 878 FRNLKELPTSLASLNALKSLKFEFCDALESLPEEGVKGLTSLTELSVSNCMMLKCLPEG 936

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score =  182 bits (462), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 168/501 (33%), Positives = 241/501 (48%), Gaps = 64/501 (12%)

Query: 82  LPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLL 141
           LP L K  SLRV +L      +LP S+GDL +LRYLNL G+ +R+LP+ + KL NL +L 
Sbjct: 519 LPPLEKFISLRVLNLGDSTFNKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNLQTLD 578

Query: 142 LEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGL 201
           L+ C +L  L  +   L  L +L    ++SL  MP  IG LTCL+TL  FVVG+  G  L
Sbjct: 579 LQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKKGYQL 638

Query: 202 RELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMG 261
            EL  L  L G++ IS+LE VK+  DA++A L  K NL  L + W  +G +  E+E E+ 
Sbjct: 639 GELGNLN-LYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWNNFGPHIYESE-EVK 696

Query: 262 VLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLK 321
           VL+ LKPH+NL    I G+ G+  P W+  S    +V++   N   C+ LP  G LP L+
Sbjct: 697 VLEALKPHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDLPCLE 756

Query: 322 HLTVR-GMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLR 380
            L +  G + V                        E ++E +  +  G    + RFP LR
Sbjct: 757 SLELHWGSADV------------------------EYVEEVDIDVHSGFPTRI-RFPSLR 791

Query: 381 ELRILRCSKLKGTFP----EHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWE 436
           +L I     LKG       E  P LE ++I  C  L +S S+L AL    I  C   V  
Sbjct: 792 KLDIWDFGSLKGLLKKEGEEQFPVLEEMIIHECPFLTLS-SNLRALTSLRI--CYNKVAT 848

Query: 437 SATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCS 496
           S    +        ++ +N  +L      +   L+EL  S              L  + +
Sbjct: 849 SFPEEM-------FKNLANLKYLT---ISRCNNLKELPTS--------------LASLNA 884

Query: 497 LKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEI 556
           LKSL+I+ C  L+SL  EE  +    L EL     + +C  L  LP+    L++L  ++I
Sbjct: 885 LKSLKIQLCCALESL-PEEGLEGLSSLTELF----VEHCNMLKCLPEGLQHLTTLTSLKI 939

Query: 557 YGCRSLVSFPEVALPSKLKKI 577
            GC  L+   E  +     KI
Sbjct: 940 RGCPQLIKRCEKGIGEDWHKI 960

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score =  178 bits (452), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 155/489 (31%), Positives = 231/489 (47%), Gaps = 53/489 (10%)

Query: 78  APSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNL 137
           +PS+L K +   SLRV +L   ++ +LP S+GDL +LRYL+LS    R+LPE + KL NL
Sbjct: 519 SPSLLKKFV---SLRVLNLSYSKLEQLPSSIGDLLHLRYLDLSCNNFRSLPERLCKLQNL 575

Query: 138 HSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDS 197
            +L + +C  L  L      L  L HL       L   P  IG LTCL+TL  F+VG   
Sbjct: 576 QTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGC-PLTSTPPRIGLLTCLKTLGFFIVGSKK 634

Query: 198 GSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAE 257
           G  L ELK L  L G++ I++LE VK+  DAE A L  K NL+ L + W   G    E++
Sbjct: 635 GYQLGELKNLN-LCGSISITHLERVKNDTDAE-ANLSAKANLQSLSMSWDNDGPNRYESK 692

Query: 258 TEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQL 317
            E+ VL+ LKPH NL+   I  +GG +FP+W+  S   K+++++ K+C  C  LP  G+L
Sbjct: 693 -EVKVLEALKPHPNLKYLEIIAFGGFRFPSWINHSVLEKVISVRIKSCKNCLCLPPFGEL 751

Query: 318 PSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFP 377
           P L++L ++  S                           +++  E+   H        FP
Sbjct: 752 PCLENLELQNGSA--------------------------EVEYVEEDDVHSRFSTRRSFP 785

Query: 378 KLRELRILRCSKLKGTFPEH----LPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKV 433
            L++LRI     LKG   E      P LE + I  C   L    +L ++ K  + G    
Sbjct: 786 SLKKLRIWFFRSLKGLMKEEGEEKFPMLEEMAILYCP--LFVFPTLSSVKKLEVHGNTNT 843

Query: 434 VWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGL--- 490
              S+  +L +  S+          L   +   L  LE L        + +K+   L   
Sbjct: 844 RGLSSISNLSTLTSLRIGANYRATSLPEEMFTSLTNLEFLSF------FDFKNLKDLPTS 897

Query: 491 LQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSS 550
           L  + +LK L+I SC  L+S       +Q  +    L  L + YC+ L  LP+    L++
Sbjct: 898 LTSLNALKRLQIESCDSLESF-----PEQGLEGLTSLTQLFVKYCKMLKCLPEGLQHLTA 952

Query: 551 LREIEIYGC 559
           L  + + GC
Sbjct: 953 LTNLGVSGC 961

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score =  174 bits (442), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 167/533 (31%), Positives = 244/533 (45%), Gaps = 65/533 (12%)

Query: 55  LYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYL 114
           ++ + + +  + +  S     Y +PS+  + +   SLRV +L      +LP SVGDL +L
Sbjct: 505 MFIVTNYKDMMSIGFSEVVSSY-SPSLFKRFV---SLRVLNLSNSEFEQLPSSVGDLVHL 560

Query: 115 RYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEE 174
           RYL+LSG +I +LP+ + KL NL +L L +C  L  L      L  L +L   +   L  
Sbjct: 561 RYLDLSGNKICSLPKRLCKLQNLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDHC-PLTS 619

Query: 175 MPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLD 234
           MP  IG LTCL+TL  FVVG+  G  L EL+ L  LRG + I++LE VK+ ++A++A L 
Sbjct: 620 MPPRIGLLTCLKTLGYFVVGERKGYQLGELRNLN-LRGAISITHLERVKNDMEAKEANLS 678

Query: 235 RKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSF 294
            K NL  L + W     Y  E   E+ VL+ LKPH NL+   I  + G   P W+  S  
Sbjct: 679 AKANLHSLSMSWDRPNRYESE---EVKVLEALKPHPNLKYLEIIDFCGFCLPDWMNHSVL 735

Query: 295 SKLVTLKFKNCDMCTALPSVGQLPSLKHLTVR-GMSKVKRLGSEFYGDDSPIPFPRLETL 353
             +V++    C+ C+ LP  G+LP L+ L ++ G  +V+      Y +DS     R    
Sbjct: 736 KNVVSILISGCENCSCLPPFGELPCLESLELQDGSVEVE------YVEDSGFLTRR---- 785

Query: 354 RFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKG----TFPEHLPALEMLVIEGC 409
                                RFP LR+L I     LKG       E  P LE + I  C
Sbjct: 786 ---------------------RFPSLRKLHIGGFCNLKGLQRMKGAEQFPVLEEMKISDC 824

Query: 410 EELLVSVSSLPALCKFIISGCKKV-VWESATGHLGSQNSVVCRDTSNQVF----LAGPLK 464
                     P      +S  KK+ +W  A     S  S +   TS ++F    +   L+
Sbjct: 825 ----------PMFVFPTLSSVKKLEIWGEADAGGLSSISNLSTLTSLKIFSNHTVTSLLE 874

Query: 465 PQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLY 524
                LE LI  +       K     L  + +LK L+IR C  L+SL  EE  +    L 
Sbjct: 875 EMFKNLENLIYLSVSFLENLKELPTSLASLNNLKCLDIRYCYALESL-PEEGLEGLSSLT 933

Query: 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKI 577
           EL     + +C  L  LP+    L++L  ++I GC  L+   E  +     KI
Sbjct: 934 ELF----VEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKI 982

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 135/462 (29%), Positives = 199/462 (43%), Gaps = 120/462 (25%)

Query: 73  KPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNL----SGTEIRTLP 128
           K G LA S    + +L  LR  +L+   +  +P S+G+L+ L YLNL    SG+ +  +P
Sbjct: 598 KGGKLASS----IGQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVSGSTL--VP 651

Query: 129 ESVSKLYNLHSLLL-EDCDRLEKLCADMGNLVKLHHLKNSNTK--SLEEMPVGIGRL--- 182
             + ++  L  L L +D  R  KL  ++ NLVKL  LKN +TK  SLE++  G+ RL   
Sbjct: 652 NVLKEMQQLRYLALPKDMGRKTKL--ELSNLVKLETLKNFSTKNCSLEDLR-GMVRLRTL 708

Query: 183 -------TCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDR 235
                  T L+TL +      S  GL+ L+ LT       I++L                
Sbjct: 709 TIELRKETSLETLAA------SIGGLKYLESLT-------ITDL---------------- 739

Query: 236 KENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSF- 294
                         GS  R  E  + V D +     L+   +K Y     P    +  F 
Sbjct: 740 --------------GSEMRTKEAGI-VFDFV----YLKTLTLKLY----MPRLSKEQHFP 776

Query: 295 SKLVTLKFKNCDMC-TALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDD---SPIPFPRL 350
           S L TL  ++C +    +P + +L  LK L +R  S        F G +   S   FP+L
Sbjct: 777 SHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKS--------FSGKEMVCSSGGFPQL 828

Query: 351 ETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPA-LEMLVIEGC 409
           + L  + L+EWED     SS      P L  L I  C KLK    EHLP+ L  + +  C
Sbjct: 829 QKLSIKGLEEWEDWKVEESS-----MPVLHTLDIRDCRKLKQLPDEHLPSHLTSISLFFC 883

Query: 410 EELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPK 469
               +    +P L + +     ++++ S +G +     +VC         AG   PQL K
Sbjct: 884 ---CLEEDPMPTLERLVHLKELQLLFRSFSGRI-----MVC---------AGSGFPQLHK 926

Query: 470 LEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSL 511
           L+   LS  +    W   DG    +  L +LEIR CPKL+ L
Sbjct: 927 LK---LSELDGLEEWIVEDG---SMPQLHTLEIRRCPKLKKL 962

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 135/462 (29%), Positives = 199/462 (43%), Gaps = 120/462 (25%)

Query: 73  KPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNL----SGTEIRTLP 128
           K G LA S    + +L  LR  +L+   +  +P S+G+L+ L YLNL    SG+ +  +P
Sbjct: 598 KGGKLASS----IGQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVSGSTL--VP 651

Query: 129 ESVSKLYNLHSLLL-EDCDRLEKLCADMGNLVKLHHLKNSNTK--SLEEMPVGIGRL--- 182
             + ++  L  L L +D  R  KL  ++ NLVKL  LKN +TK  SLE++  G+ RL   
Sbjct: 652 NVLKEMQQLRYLALPKDMGRKTKL--ELSNLVKLETLKNFSTKNCSLEDLR-GMVRLRTL 708

Query: 183 -------TCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDR 235
                  T L+TL +      S  GL+ L+ LT       I++L                
Sbjct: 709 TIELRKETSLETLAA------SIGGLKYLESLT-------ITDL---------------- 739

Query: 236 KENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSF- 294
                         GS  R  E  + V D +     L+   +K Y     P    +  F 
Sbjct: 740 --------------GSEMRTKEAGI-VFDFV----YLKTLTLKLY----MPRLSKEQHFP 776

Query: 295 SKLVTLKFKNCDMC-TALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDD---SPIPFPRL 350
           S L TL  ++C +    +P + +L  LK L +R  S        F G +   S   FP+L
Sbjct: 777 SHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKS--------FSGKEMVCSSGGFPQL 828

Query: 351 ETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPA-LEMLVIEGC 409
           + L  + L+EWED     SS      P L  L I  C KLK    EHLP+ L  + +  C
Sbjct: 829 QKLSIKGLEEWEDWKVEESS-----MPVLHTLDIRDCRKLKQLPDEHLPSHLTSISLFFC 883

Query: 410 EELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPK 469
               +    +P L + +     ++++ S +G +     +VC         AG   PQL K
Sbjct: 884 ---CLEEDPMPTLERLVHLKELQLLFRSFSGRI-----MVC---------AGSGFPQLHK 926

Query: 470 LEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSL 511
           L+   LS  +    W   DG    +  L +LEIR CPKL+ L
Sbjct: 927 LK---LSELDGLEEWIVEDG---SMPQLHTLEIRRCPKLKKL 962

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 133/304 (43%), Gaps = 47/304 (15%)

Query: 1   MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSR----YLRHLSYIRGDYDGVQRFGDLY 56
           +HD+V DL                ++ K+  FS       RHL  I G++D  Q      
Sbjct: 487 IHDMVRDLV--------------IDIAKKDSFSNPEGLNCRHLG-ISGNFDEKQ-----I 526

Query: 57  DIQHLRTFLPVILSNSKPG---YLAPSMLPKLLKLQSLRVF----SLRGYRILELPDSVG 109
            + H    L  ++S +K G    L   +  K    + LRV     S+    + E+ D + 
Sbjct: 527 KVNHK---LRGVVSTTKTGEVNKLNSDLAKKFTDCKYLRVLDISKSIFDAPLSEILDEIA 583

Query: 110 DLRYLRYLNLSGTE-IRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSN 168
            L++L  L+LS T  +   P S+  L+NL  L    C  L++L   +    KL  L  +N
Sbjct: 584 SLQHLACLSLSNTHPLIQFPRSMEDLHNLQILDASYCQNLKQLQPCIVLFKKLLVLDMTN 643

Query: 169 TKSLEEMPVGIGRLTCLQTLCSFVVGK-DSGSGLRELKLLTQLRG-TLCISNLENVKHIV 226
             SLE  P GIG L  L+ L  F   + ++G  L E+K LT LR   L ++  + +    
Sbjct: 644 CGSLECFPKGIGSLVKLEVLLGFKPARSNNGCKLSEVKNLTNLRKLGLSLTRGDQI---- 699

Query: 227 DAEDAQLDRKENLKELW-LRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKF 285
             E+ +LD   NL +L  +    Y SY  +  T+   +D L P   L +  ++ Y G   
Sbjct: 700 --EEEELDSLINLSKLMSISINCYDSYGDDLITK---IDALTPPHQLHELSLQFYPGKSS 754

Query: 286 PTWL 289
           P+WL
Sbjct: 755 PSWL 758

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 146/358 (40%), Gaps = 70/358 (19%)

Query: 82  LPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLL 141
           LP    + SL+  ++    + +LP   G L  L +++LS T++R LP S+  L+ L +L 
Sbjct: 375 LPSASGMSSLQKLTVDNSSLAKLPADFGALGNLAHVSLSNTKLRDLPASIGNLFTLKTLS 434

Query: 142 LEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLC---SFVVGKDSG 198
           L+D  +L  L A  G L  L  L   N   + E+P  +G  + LQTL    + + G  + 
Sbjct: 435 LQDNPKLGSLPASFGQLSGLQEL-TLNGNRIHELP-SMGGASSLQTLTVDDTALAGLPAD 492

Query: 199 SG-LRELKLL----TQLRG-TLCISNLENVKHIVDAEDAQLDR-------KENLKELWLR 245
            G LR L  L    TQLR       NL  +K +    + QL            L+EL L+
Sbjct: 493 FGALRNLAHLSLSNTQLRELPANTGNLHALKTLSLQGNQQLATLPSSLGYLSGLEELTLK 552

Query: 246 WTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNC 305
                       + +  L  + P + L+   ++       P  +G     +L  L   N 
Sbjct: 553 -----------NSSVSELPPMGPGSALKTLTVENSPLTSIPADIG-IQCERLTQLSLSNT 600

Query: 306 DMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSI 365
            +     S+G+L +LK LT++  +                   RLE L            
Sbjct: 601 QLRALPSSIGKLSNLKGLTLKNNA-------------------RLELL------------ 629

Query: 366 PHGSSQGVERFPKLRELRILRCSKLKGTFPE---HLPALEMLVIEGCEELLVSVSSLP 420
              S  GV +   +R++ +  C +L G  P     LP L  L + GC  L  S++SLP
Sbjct: 630 ---SESGVRKLESVRKIDLSGCVRLTG-LPSSIGKLPKLRTLDLSGCTGL--SMASLP 681

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	962
284026888	1424	CC-NBS-LRR protein [Quercus suber]	0.948	0.640	0.413	1e-174
400131587	1388	FB_MR5 [Malus x robusta]	0.912	0.632	0.410	1e-162
225449649	1418	PREDICTED: putative disease resistance p	0.928	0.629	0.395	1e-156
356554923	1399	PREDICTED: putative disease resistance R	0.920	0.633	0.384	1e-150
225450023	1396	PREDICTED: putative disease resistance p	0.905	0.623	0.369	1e-143
224059584	1418	cc-nbs-lrr resistance protein [Populus t	0.939	0.637	0.388	1e-142
147766392	1471	hypothetical protein VITISV_007674 [Viti	0.898	0.587	0.365	1e-140
359487225	1373	PREDICTED: putative disease resistance R	0.900	0.630	0.375	1e-139
359487424	1453	PREDICTED: putative disease resistance R	0.948	0.627	0.376	1e-139
225450003	1452	PREDICTED: putative disease resistance R	0.943	0.625	0.376	1e-139

>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber]

 Score =  620 bits (1598), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 401/970 (41%), Positives = 567/970 (58%), Gaps = 58/970 (5%)

Query: 1    MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQH 60
            MHDL++DLAQW AG  YF +E   + N+Q + S   RHLS++   YDG ++F  + + +H
Sbjct: 491  MHDLITDLAQWVAGISYFRLETKLKGNEQSKVSSKARHLSFVGSRYDGAKKFEAISEFKH 550

Query: 61   LRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNL 119
            LRTFLP++       YL+  ++ +LL KLQ+LRV SL GYRI+ LP ++GDL++LRYL+L
Sbjct: 551  LRTFLPLMAPYVGYSYLSYHIINQLLPKLQNLRVLSLSGYRIVYLPQTIGDLKHLRYLDL 610

Query: 120  SGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGI 179
            S T++R+LP S+S LYNL +LLLE+C  L+ L  D G L  L HL    +  LE MP+ I
Sbjct: 611  SCTQLRSLPTSISTLYNLQTLLLENCTSLKFLPPDFGKLFNLRHLNIFGSNLLEGMPLSI 670

Query: 180  GRLTCLQTLCSFVVGK-DSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKEN 238
            G L+ LQTL +FVVGK DS   +REL  L  LRGTLCIS LENV    +A D+ L  K++
Sbjct: 671  GNLSSLQTLSNFVVGKADSFCVIRELGPLVHLRGTLCISKLENVTKAQEARDSYLYGKQD 730

Query: 239  LKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLV 298
            L E+ + W+   + S++ ET++ VL+ML+P+  L++  +K YGG KFPTW+GD SFS LV
Sbjct: 731  LNEVVMEWSSNLNESQDEETQLEVLNMLQPNVKLKELTVKCYGGTKFPTWIGDPSFSNLV 790

Query: 299  TLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDL 358
             L+F+NCD C +LP VGQLP LK L ++GM+ VK +G EFYG+    PF  LETL FED+
Sbjct: 791  LLRFENCDNCNSLPPVGQLPFLKDLLIKGMAGVKSVGREFYGESCSRPFQSLETLHFEDM 850

Query: 359  QEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSS 418
              W + IP G +   E F  L +L I+RC  L    P+HLP+L+ LVI GC  ++VSVS+
Sbjct: 851  PRWVNWIPLGVN---EAFACLHKLSIIRCHNLVRKLPDHLPSLKKLVIHGCWNMVVSVSN 907

Query: 419  LPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEEL-ILST 477
            LP LC  +I GCK+V  ES+ G  GS  S+     S        L   + K+E L I+ +
Sbjct: 908  LPMLCVLVIEGCKRVECESSVG-FGSPYSMAFSKISEFGNATAGLMHGVSKVEYLKIVDS 966

Query: 478  KEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEG 537
            ++ T +W+     L  +  L+ L I  CP L S  A            +L+ +++  C G
Sbjct: 967  EKLTTLWEKIPEGLHRLKFLRELSIEDCPTLVSFPA-------SGFPSMLKVIQIKSCSG 1019

Query: 538  LVK-LPQSSLSL---SSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWM 593
            L   LP+ +L     + L  + +  C S+ S     LP+ LKK+EIS C  L+ + +   
Sbjct: 1020 LKSLLPEGTLHSRENACLERLCVVRCDSMKSIARGQLPTTLKKLEISHCMNLQCVLDEGE 1079

Query: 594  CDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTS 653
              ++SS    E     S T+         L+ L I  C ++ TLT       SSG+    
Sbjct: 1080 GSSSSSGMHDEDINNRSKTH---------LQYLDIKSCPSLTTLT-------SSGK--LP 1121

Query: 654  SLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNN 713
            + L HL +  CP L C+ S  +LPA L+ LE+ ++            SKL+ IAE L  N
Sbjct: 1122 ATLTHLLLRECPKLMCLSSTGKLPAALQYLEIQSI------------SKLQKIAERLHQN 1169

Query: 714  TSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCK 773
            TSLE I I  C  L++LP  LHNL +L++  I  C +  S P  GLP + L +L I NCK
Sbjct: 1170 TSLECIKIWNCHGLKSLPEDLHNLSKLRQFLIFWCQSFSSFPAAGLP-SNLRVLGIKNCK 1228

Query: 774  RLEALPKGLHNLKSLQELRIGKGV-ALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRG 832
             L+ALP G+ NL SLQ+L I   + +LPS +E GLPTNL + L   +++ +K M E   G
Sbjct: 1229 NLKALPNGMRNLTSLQKLDISHRLDSLPSPQE-GLPTNL-IELNMHDLKFYKPMFE--WG 1284

Query: 833  FHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLT-SSI 891
              + +SL +L+I     D+ S+P    ++ +G ++ LP SL+ L I  F NLE L+    
Sbjct: 1285 LQQPTSLIKLSIHGECLDVDSYP---GERENGVMMLLPNSLSILCISYFQNLECLSPKGF 1341

Query: 892  VDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLLTHIPR 951
             +L +L  L + NC KL   P++GLP SL QL I  CPL+ + C  + GQ W  + HIP 
Sbjct: 1342 QNLTSLNQLKIYNCLKLTSLPKEGLPPSLTQLEIRNCPLLSQHCNNEKGQEWSKIAHIPC 1401

Query: 952  VEISGKWVFD 961
            V I  K++ +
Sbjct: 1402 VLIDNKFIHE 1411

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta]

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 402/979 (41%), Positives = 552/979 (56%), Gaps = 101/979 (10%)

Query: 1    MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQ-RFSRYLRHLSYIRGDYDGVQRFGDLYDIQ 59
            MHDL+ DLA+WAAGE+ F +E     + +Q R     RH SYIRG  DGV+RF    +++
Sbjct: 491  MHDLIGDLARWAAGEICFRLEDKQNDDGEQLRCFPKARHSSYIRGLSDGVKRFEVFSELK 550

Query: 60   HLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPDSVGDLRYLRYLN 118
            +LRTFLP +  +S   YL+  +   LL KLQ LRV S   Y+I ELPDS+GDLRYLRYL+
Sbjct: 551  YLRTFLP-LRKDSFWNYLSRQVAFDLLPKLQYLRVLSFNCYKITELPDSIGDLRYLRYLD 609

Query: 119  LSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVG 178
            LS T+I +LP+S S LYNL +L+LE C +L+ L  DM NLV L HL NSN   LE+MP  
Sbjct: 610  LSYTDITSLPKSTSTLYNLQTLILEGCSKLKALPIDMSNLVNLRHLNNSNVSLLEDMPPQ 669

Query: 179  IGRLTCLQTLCSFVVG---KDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDR 235
            +GRL  LQ+L  FVV        SG+REL+ L  LRGTLCIS LENV  + DA+ A L+ 
Sbjct: 670  LGRLVNLQSLTKFVVSGGGGGDRSGIRELEFLMHLRGTLCISRLENVTDVEDAQRANLNC 729

Query: 236  KENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFS 295
            KE L  L L W+ + S +R  ETE  VLDML+PHT L++  IK Y G +F +W+G   FS
Sbjct: 730  KERLDSLVLEWS-HSSDTR--ETESAVLDMLQPHTKLKELTIKSYAGKEFSSWVGVPLFS 786

Query: 296  KLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRF 355
             +V ++ + C+ C +LP +G+LP LK L +RGM+ V+ +G+EFYG+ S +PFP LETL F
Sbjct: 787  NMVLVRLEECNNCLSLPPLGKLPHLKELYIRGMNAVESVGAEFYGECS-LPFPLLETLEF 845

Query: 356  EDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVS 415
             D+Q W+  +P  +      FP L+ L + +CSKL+G  PE+L +L  L I  CEELLVS
Sbjct: 846  VDMQHWKVWLPFQTDHRGSVFPCLKTLLVRKCSKLEGKLPENLDSLASLEIVKCEELLVS 905

Query: 416  VSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFL-AGPL-KPQLPKLEEL 473
            +++   L +  I GCK VV  +A        S+   + S    L  G L +  L  + +L
Sbjct: 906  IANYKQLRQLNIDGCKGVVHTAAKVEFELLESLYLSNISELTSLQTGELCRNGLNMVRDL 965

Query: 474  -ILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYEL------ 526
             I   +E T   K+   LLQ + SL  LEI       SL+ EE   +  +L +L      
Sbjct: 966  KINGCEELTSSLKNEAILLQQLISLGRLEIED----NSLLVEELGKEADELLQLQILGCK 1021

Query: 527  LEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALK 586
            LE+L+L  C+ L+KLP+    LSSL+E+ I+ C SLVSFP+V LP  LK IEI+      
Sbjct: 1022 LEFLKLKKCKNLLKLPEGLNQLSSLQELRIHECSSLVSFPDVGLPPSLKDIEITE----- 1076

Query: 587  SLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGI-QC 645
                                 C SL Y A  Q+P +L+R++I  C ++R+L   E +  C
Sbjct: 1077 ---------------------CHSLIYFAKSQIPQNLRRIQIRDCRSLRSLVDNEAVGSC 1115

Query: 646  SSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLES 705
            SS    + + LE+L I  C SLT +   ++L   L  L+            ++ C +LE 
Sbjct: 1116 SSS---SHNCLEYLNIERCQSLTLLSLSDQLVRALRELD------------IYDCEQLEF 1160

Query: 706  IAE--MLDNNTS--LEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPC 761
            +A   +  NNT+  LE   I  C NL++LP                         GG+  
Sbjct: 1161 LAPDGLFCNNTNYFLENFRIRRCQNLKSLP----------------------RLSGGIRG 1198

Query: 762  AKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNME 821
            + L  + I +C RLEALP+ +HN  SL++L I     L        P NL  L+I   ++
Sbjct: 1199 SNLREIRITDCDRLEALPEDMHNFNSLEKLIIDYREGLTC----SFPANLTSLMI-WKVK 1253

Query: 822  IWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGF 881
              KS+ E   G HR +SLR L I   D DMVSFPP   D      L LP SLT L I GF
Sbjct: 1254 SCKSLWELEWGLHRLTSLRYLWIGGEDPDMVSFPP---DMVRMETL-LPKSLTELSIGGF 1309

Query: 882  PNLERLTSSIVD-LQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGG 940
            PNL++L+S     L +L  L L +CPKL   P++GLP SL +L I  CP+++E+C+   G
Sbjct: 1310 PNLKKLSSKGFQFLTSLESLELWDCPKLASIPKEGLPLSLTELCIYGCPVLKERCQPGKG 1369

Query: 941  QYWDLLTHIPRVEISGKWV 959
            +YW  ++HIP ++I  K +
Sbjct: 1370 RYWHKISHIPYIDIDWKMI 1388

Source: Malus x robusta

Species: Malus x robusta

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449649|ref|XP_002262753.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 388/980 (39%), Positives = 546/980 (55%), Gaps = 87/980 (8%)

Query: 1    MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQH 60
            MHDL++DLAQ+ + E+ F +E + + N++  FS  +RH S+ R  Y+  ++F D Y  ++
Sbjct: 499  MHDLINDLAQYVSEEICFHLEDSLDSNQKHTFSGSVRHSSFARCKYEVFRKFEDFYKAKN 558

Query: 61   LRTFL--PVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPDSVGDLRYLRYL 117
            LRTFL  P+ +      +L   +   LL KL+ LRV SL  Y I ELP+S+GDL++LRYL
Sbjct: 559  LRTFLALPIHMQYYDFFHLTDKVSHDLLPKLRYLRVLSLSHYEIRELPNSIGDLKHLRYL 618

Query: 118  NLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPV 177
            NLS T I+ LP+S+S L+NL +L+L  C RL +L     NL+ L HL  ++T  LE MP 
Sbjct: 619  NLSCTIIQELPDSLSDLHNLQTLVLFRCRRLNRLPRGFKNLINLRHLDIAHTHQLEVMPP 678

Query: 178  GIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKE 237
             +G+L  LQTL  F+VGK    G++EL  L  LRG L I +L+NV  I DA DA L  K 
Sbjct: 679  QMGKLKSLQTLSKFIVGKSKELGIKELGDLLHLRGKLSILDLQNVVDIQDARDANLKDKH 738

Query: 238  NLKELWLRWTLYGSYSREAET-EMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSK 296
            +L+EL + W+       + ET E+ VL  L+P+TNL++  I+ YGG+ FP W+GD SFSK
Sbjct: 739  HLEELLMEWSSNMFDDSQNETIELNVLHFLQPNTNLKKLTIQSYGGLTFPYWIGDPSFSK 798

Query: 297  LVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPI--PFPRLETLR 354
            +V L+   C  CT LPS+G+L SLK L V+GM  VK +G EFYG+ S    PFP LE LR
Sbjct: 799  MVCLELNYCRKCTLLPSLGRLSSLKKLCVKGMQGVKSVGIEFYGEPSLCVKPFPSLEFLR 858

Query: 355  FEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLV 414
            FED+ EWE+          E +P+LREL I  C KL    P HLP+L  L I  C +L+ 
Sbjct: 859  FEDMPEWEEWC------SSESYPRLRELEIHHCPKLIQKLPSHLPSLVKLDIIDCPKLVA 912

Query: 415  SVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEEL- 473
             + SLP L   I++ C + +  S  G L S  ++   + SN  FL   L   L  LE L 
Sbjct: 913  PLPSLPFLRDLIVAECNEAMLRSG-GDLTSLITLRLENISNLTFLNEGLVRFLGALEVLE 971

Query: 474  ILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLS 533
            I +  E  ++ +S  G  +++  ++ L I  CPKL  L+AE+     Q L   LEYL ++
Sbjct: 972  ICNCSELKFLLQSGVG-FENLSCIRHLVIVMCPKL-VLLAED-----QPLPCNLEYLEIN 1024

Query: 534  YCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWM 593
             C  L KLP    SL+SLRE+ I  C  L S  E+  P  L  +E+  C+ L+SLP+  M
Sbjct: 1025 KCASLEKLPIGLQSLTSLRELSIQKCPKLCSLAEMDFPPMLISLELYDCEGLESLPDGMM 1084

Query: 594  CDTNSS----LEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGR 649
             +  +     LE L+I  C SL      +LP  LK L+I  C  +++L   EG+      
Sbjct: 1085 INGENRNFCLLECLKIVHCPSLICFPRGELPSKLKELEIIDCAKLQSLP--EGLILGDHT 1142

Query: 650  RYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEM 709
             +    LE L I+ CP L+  F +  LP+T++ LE+ N            C +LESI+ +
Sbjct: 1143 CH----LEFLRIHRCPLLSS-FPRGLLPSTMKRLEIRN------------CKQLESIS-L 1184

Query: 710  LDNNTSLE-------KINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCA 762
            L ++T+LE       KIN SGC         LH+L  L E+ I SC  L S PE G    
Sbjct: 1185 LSHSTTLEYLRIDRLKINFSGC---------LHSLKHLIELHIYSCSGLESFPERGFSSP 1235

Query: 763  KLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEI 822
             L ML I +CK L++LP  + +  SL++LRI     L S  E+GL  NL    I     +
Sbjct: 1236 NLKMLHIDDCKNLKSLPLQMQSFTSLRDLRIYDCPNLVSFAEEGLSLNLTSFWIRNCKNL 1295

Query: 823  WKSMIERGRGFHRFSSLRQLTIMN----CDDDMVSFPPKADDKGSGTVLPLPASLTYLRI 878
               + +   G H  +SL+   I N    CD D +                LP +LTYL I
Sbjct: 1296 KMPLYQ--WGLHGLTSLQTFVINNVAPFCDHDSLPL--------------LPRTLTYLSI 1339

Query: 879  EGFPNLERLTSSIVDLQNLTG---LVLGNCPKLKYF-PEKGLPSSLLQLSINRCPLIEEK 934
              F NLE L+S  + LQNLT    L + +CPKL+ F P++GL ++L  L I  CP+IE +
Sbjct: 1340 SKFHNLESLSS--MGLQNLTSLEILEIYSCPKLQTFLPKEGLSATLSNLRIKFCPIIEAR 1397

Query: 935  CRKDGGQYWDLLTHIPRVEI 954
            CRK+ G+ W +++HIPR+++
Sbjct: 1398 CRKNKGEDWPMISHIPRIDM 1417

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max]

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 376/977 (38%), Positives = 544/977 (55%), Gaps = 91/977 (9%)

Query: 1    MHDLVSDLAQWAAGEMYFTME--YTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDI 58
            MHDL++DLAQW AGE  F ++  + S   K+++ S+  R+ SY+ G+YDG+Q F    + 
Sbjct: 493  MHDLINDLAQWVAGESCFKLDNNFQSHKQKKKKISKMTRYASYVGGEYDGIQMFQAFKEA 552

Query: 59   QHLRTFLPV---------ILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVG 109
            + LRTFLP+          ++N  P  L P       +L+ LR  SL GY I +LP+SV 
Sbjct: 553  KSLRTFLPLKHRRLEEWSYITNHVPFELLP-------ELRCLRALSLSGYFISKLPNSVS 605

Query: 110  DLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNT 169
            +L  LRYLNLS T++R LPES+  L NL +LLL DC  LE+L ++M +L+ L HL  + +
Sbjct: 606  NLNLLRYLNLSSTDLRQLPESICSLCNLQTLLLRDCFNLEELPSNMSDLINLRHLDITRS 665

Query: 170  KSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAE 229
             SL  MP GIG+LT LQTL +FVVG    SG+ EL  L+ +RG L +S LE+V    +A 
Sbjct: 666  HSLTRMPHGIGKLTHLQTLSNFVVG---SSGIGELMKLSNIRGVLSVSRLEHVTDTREAS 722

Query: 230  DAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWL 289
            +A +++K  +  L L+WT   +     E    VL ML+PH NL +  IK YGG  FP W+
Sbjct: 723  EAMINKKVGIDVLKLKWTSCMNNQSHTERAKEVLQMLQPHKNLAKLTIKCYGGTSFPKWI 782

Query: 290  GDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPR 349
            GD S+  LV LK K+C  CT+LP++G L +LK L + GM +V  +  EF G+    PFP 
Sbjct: 783  GDPSYKSLVFLKLKDCAHCTSLPALGNLHALKELYIIGMKEVCCIDGEFCGNACLRPFPS 842

Query: 350  LETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGC 409
            LE L F D+++WE+     +++  + F  L++L I++C KL G  PE+LP+L+ ++++ C
Sbjct: 843  LERLYFMDMEKWENWFLSDNNEQNDMFSSLQQLFIVKCPKLLGKLPENLPSLKHVIVKEC 902

Query: 410  EELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPK 469
            E+LLV++SSLP L K  I GCK +V   A     S NS+         FL   L      
Sbjct: 903  EQLLVTISSLPVLYKLEIEGCKGLVLNCA-NEFNSLNSMSVSRILEFTFLMERLVQAFKT 961

Query: 470  LEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEE---EKDQQQQLYEL 526
            +EEL + +                 C+L          L  L   E   EK+    L  +
Sbjct: 962  VEELKIVS-----------------CALDE------TVLNDLWVNEVWLEKN-PHGLSSI 997

Query: 527  LEYLRLSYCEGLVKLPQSSLSLSSLRE-IEIYGCRSLVSFPEVALPSKLKKIEISSCDAL 585
            L  + +  C  +  +P+  +  S   E + I  C S+V      LP  LK +EIS+C  L
Sbjct: 998  LRLIEIRNCNIMKSIPKVLMVNSHFLERLYICHCDSIVFVTMDQLPHSLKSLEISNCKNL 1057

Query: 586  KSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQC 645
            + L +   C T+SS+    I   D++ +  G  +   L+ + I  C ++  ++       
Sbjct: 1058 RCLLDNGTC-TSSSI----IMHDDNVQH--GSTIISHLEYVYIGWCPSLTCIS------- 1103

Query: 646  SSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLES 705
             SG    S  ++HL I++C  L+C+  K +LP ++E LE+              C KLES
Sbjct: 1104 RSGELPES--VKHLFIWNCSELSCLSMKGQLPKSIERLEIQ------------SCPKLES 1149

Query: 706  IAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLA 765
            IA  L  NTSLE I I  C NL++LP GLH L  L+EI I  C NLVS PE GLP + L+
Sbjct: 1150 IANRLHRNTSLESIQIWNCENLKSLPEGLHFLVNLKEIKIIGCPNLVSFPEEGLPASSLS 1209

Query: 766  MLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKS 825
             L+I +C++L ALP  ++NL SL+EL IG   ++    E   P NL  L IN +    ++
Sbjct: 1210 ELSIMSCEKLVALPNSMYNLDSLKELEIGYCPSIQYFPEINFPDNLTSLWINDH-NACEA 1268

Query: 826  MIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLE 885
            M     G ++ S LR LTI+  +     F P    +  GT+  LP++LT L ++GFP+LE
Sbjct: 1269 MF--NWGLYKLSFLRDLTIIGGN----LFMPL---EKLGTM--LPSTLTSLTVQGFPHLE 1317

Query: 886  RLTSS-IVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWD 944
             L+S     L +L+ L + NCPKL   PEKGLPSSLL+L I  CP ++E+CRKD G+ W 
Sbjct: 1318 NLSSEGFHKLTSLSKLSIYNCPKLLCLPEKGLPSSLLELYIQDCPFLKEQCRKDKGRDWL 1377

Query: 945  LLTHIPRVEISGKWVFD 961
             +  +P VEI GK+++D
Sbjct: 1378 KIADVPYVEIDGKFIYD 1394

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450023|ref|XP_002272823.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] gi|451798994|gb|AGF69195.1| disease resistance protein At3g14460-like protein 2 [Vitis labrusca]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 528/982 (53%), Gaps = 111/982 (11%)

Query: 1    MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQH 60
            MHDLV+DLA++  GE+ F++E   E N+QQ  S+  RH S+IR  YD  ++F   Y +++
Sbjct: 504  MHDLVNDLAKFVGGEICFSLEKNLEGNQQQTISKKARHSSFIRDRYDIFKKFEAFYGMEN 563

Query: 61   LRTFLPVILSN-SKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPDSVGDLRYLRYLN 118
            LRTF+ + +       +L+  +L  L+ KL+ LRV  L GYRI E+P SVGDL++LRYLN
Sbjct: 564  LRTFIALPIDPLWDYNWLSNKVLEGLMPKLRRLRVLLLSGYRISEIPSSVGDLKHLRYLN 623

Query: 119  LSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVG 178
            LS T+++ LP+S+  L+NL +L+L +C +L +L   +GNL  L HL  +NT +LEEMP  
Sbjct: 624  LSRTKVKRLPDSLGNLHNLETLILSNCRKLIRLPLSIGNLNNLRHLDVTNT-NLEEMPPR 682

Query: 179  IGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKEN 238
            I +L  LQ L +F+VGKD+G  ++EL+ + QL+G LCIS LENV ++ DA DA L++K+ 
Sbjct: 683  ICKLKGLQVLSNFIVGKDNGLNVKELRNMPQLQGGLCISKLENVANVQDARDASLNKKQK 742

Query: 239  LKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLV 298
            L+EL + W+   + S  A  +  VLD L+PH NL +  I+ YGG +FP W+GD SFSK+V
Sbjct: 743  LEELTIEWSAGLNDSHNARNQKDVLDSLQPHFNLNKLKIEYYGGPEFPPWIGDVSFSKMV 802

Query: 299  TLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDD--SPIPFPRLETLRFE 356
             +   NC  CT+LP +G LP LKH+ + G+ +VK +G EFYG+      PFP LE+L F 
Sbjct: 803  DVNLVNCRNCTSLPCLGWLPMLKHVRIEGLKEVKIVGREFYGETCLPNKPFPSLESLSFS 862

Query: 357  DLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSV 416
             + +WED     S    E +P L  L I+ C KL    P +LP+L    I  C +L+  +
Sbjct: 863  AMSQWED---WESPSLSEPYPCLLHLEIINCPKLIKKLPTNLPSLVHFSIGTCPQLVSPL 919

Query: 417  SSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILS 476
              LP+L K  +  C + V  S    L S   +          L       L  L+ L + 
Sbjct: 920  ERLPSLSKLRVQDCNEAVLRSGL-ELPSLTELGIDRMVGLTRLHEGCMQLLSGLQVLDID 978

Query: 477  TKEQ-TYIWKS-HDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSY 534
              ++ T +W++  DG+ Q       L+  SCP+L SL  E+EK    +L   L+ L++ +
Sbjct: 979  RCDKLTCLWENGFDGIQQ-------LQTSSCPELVSL-GEKEK---HELPSKLQSLKIRW 1027

Query: 535  CEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMC 594
            C  L KLP     L+ L E+EIY C  LVSFPE+  P  L+++ I SC+ L+ LP+  M 
Sbjct: 1028 CNNLEKLPNGLYRLTCLGELEIYDCPKLVSFPELGFPPMLRRLVIHSCEGLRCLPDWMMV 1087

Query: 595  DTNSS--------LEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCS 646
              + S        LE L I  C SL      +LP +LK LKI  C+ + +L        S
Sbjct: 1088 MKDGSNNGSDVCLLEYLHIHTCPSLIGFPEGELPTTLKELKIWRCEKLESLPGGMMHHDS 1147

Query: 647  SGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESI 706
            +    TS  L  L+I+ CPSLT  F   + P+TL+ LE+            W C++LESI
Sbjct: 1148 NTTTATSGGLHVLDIWKCPSLT-FFPTGKFPSTLKKLEI------------WDCAQLESI 1194

Query: 707  AE--MLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKL 764
            ++     NN+SLE ++I     L+ +P  L+                           KL
Sbjct: 1195 SKETFHSNNSSLEYLSIRSYPCLKIVPDCLY---------------------------KL 1227

Query: 765  AMLAIYNCKRLEALPKGLHNLKSLQELRIGK--GVALPSLEEDGLPTNLHVLLINGNMEI 822
              L I NC+ +E LP  L NL +L  L I +   + +P                   +  
Sbjct: 1228 RELEINNCENVELLPHQLQNLTALTSLGIYRCENIKMP-------------------LSR 1268

Query: 823  WKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLP-LPASLTYLRIEGF 881
            W        G    +SL++LTI      + SF         G   P LP +LT+L I+ F
Sbjct: 1269 W--------GLATLTSLKELTIGGIFPRVASF-------SDGQRPPILPTTLTFLSIQDF 1313

Query: 882  PNLERLTS-SIVDLQNLTGLVLGNCPKLKYF-PEKGLPSSLLQLSINRCPLIEEKCRKDG 939
             NL+ L+S ++  L +L  L +  CPKL+ F P +GLP +L +L I  CPL++++C K  
Sbjct: 1314 QNLKSLSSLALQTLTSLEDLWIQRCPKLQSFCPREGLPDTLSRLYITDCPLLKQRCSKGK 1373

Query: 940  GQYWDLLTHIPRVEISGKWVFD 961
            GQ W  + HIP VEI  K VF+
Sbjct: 1374 GQDWPNIAHIPYVEIDDKNVFE 1395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059584|ref|XP_002299919.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222847177|gb|EEE84724.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 376/968 (38%), Positives = 508/968 (52%), Gaps = 64/968 (6%)

Query: 1    MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQH 60
            MH L+SDLAQ  AGE    +    E NK        RH+S+ R  Y+ +QRF DL  ++ 
Sbjct: 495  MHHLISDLAQSIAGETCVNLNDKLENNKVFPDPEKTRHMSFTRRTYEVLQRFKDLGKLKR 554

Query: 61   LRTFLPVILSNSKPG---YLAPSMLPKLL-KLQSLRVFSLRGYRILELPDSVGDLRYLRY 116
            LRTF+ + L +S      YL+ ++L + L KL+ LRV SL GY I ELP+S+GDL+ LRY
Sbjct: 555  LRTFIALRLYSSPWAAYCYLSNNVLHEALSKLRRLRVLSLSGYCITELPNSIGDLKQLRY 614

Query: 117  LNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMP 176
            LN S T+I+ LPESVS L NL +L L  C +L KL    GNL+ L HL  ++T +L EMP
Sbjct: 615  LNFSQTKIKRLPESVSTLINLQTLKLYGCRKLNKLPQGTGNLIDLCHLDITDTDNLFEMP 674

Query: 177  VGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRK 236
              +G LT LQ L  F VGK  G G+ EL+ L  L G L I  L NV     A  A L  K
Sbjct: 675  SWMGNLTGLQKLSKFTVGKKEGCGIEELRGLQNLEGRLSIMALHNVIDARHAVHANLRGK 734

Query: 237  ENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSK 296
             NL EL L W+       + + +M VLD L+PHTNL++  I  YGG +FP+W+G  SFSK
Sbjct: 735  HNLDELELEWSKSDIKDEDRQHQMLVLDSLQPHTNLKELKISFYGGTEFPSWVGHPSFSK 794

Query: 297  LVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPI-PFPRLETLRF 355
            +V LK   C  CT LP +G+LP L+ L ++G+  V+ +G EFYGD S + PFP L+TL F
Sbjct: 795  IVHLKLSCCRKCTVLPPLGRLPLLRDLCIQGLDAVETVGHEFYGDCSSVKPFPSLKTLTF 854

Query: 356  EDLQEWEDSIPHG-SSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLV 414
            ED+QEW+     G   +  E+FP L EL +  C KL G FP  LP+   + I  C  L+ 
Sbjct: 855  EDMQEWKSWSAVGVDGEAEEQFPSLSELTLWNCPKLLGRFPSCLPSCVKITIAKCPMLVD 914

Query: 415  SVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELI 474
            S   LP L +  +  C +V       H  S  ++     S   +L G L   L  L+ L+
Sbjct: 915  SDEKLPVLGELKLEECDEVK-PKCMFHNSSLITLKLGSMSRLTYLKGQLLQSLGALKVLM 973

Query: 475  LSTKEQ-TYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLS 533
            +S   + T +W+   G          LE    P+  SL         +         +LS
Sbjct: 974  ISDFPKLTSLWQKGTG----------LENFEHPQFVSLTEIGMPSTHKS-------SKLS 1016

Query: 534  YCEGLVKLPQSSLS-LSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAW 592
             C+ L  LP  ++  L SL ++ I  C +LVS PE  L S L+ + +  C AL+SLP+  
Sbjct: 1017 GCDKLDLLPIHTVHMLLSLEDLCIESCPNLVSIPEAGLLSSLRHLVLRDCKALRSLPDGM 1076

Query: 593  MCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYT 652
               +N  LE LEI  C SL    G  LP +LK LKI +C  +++L   E +  +     T
Sbjct: 1077 ---SNCPLEDLEIEECPSLECFPGRMLPATLKGLKIRYCTELKSLP--EDLMHNKNGPGT 1131

Query: 653  SSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAE-MLD 711
                EHLEI  CPS             L+S   G LP  LK L +W CS+L+ ++E ML 
Sbjct: 1132 LCHFEHLEIIGCPS-------------LKSFPDGKLPTRLKTLKIWDCSQLKPLSEMMLH 1178

Query: 712  NNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYN 771
            ++ SLE + IS C  L + P  L +   L E+++++C  L   P  G P A L  L IYN
Sbjct: 1179 DDMSLEYLAISDCEALSSFPECLSSFKHLSELNLSNCSALKLFPGVGFPPANLRTLTIYN 1238

Query: 772  CKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERG- 830
            CK L++LP  +  L SLQEL I    AL S     +P +L       ++EIW      G 
Sbjct: 1239 CKNLKSLPNEMRKLTSLQELTICSCPALKSFPNGDMPPHL------TSLEIWDCDNLDGC 1292

Query: 831  ---RGFHRFSSLRQLTIM-NCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLER 886
                     + LR  +I   C    VSFP   D+K       LP +LT + I   PNLE 
Sbjct: 1293 LSEWNLQSLTCLRDFSIAGGCFSHTVSFP---DEK-----CLLPTNLTSVWIGRLPNLES 1344

Query: 887  LTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLL 946
            L+  +  L  L  L + +CPKLK  P   LP +L + SI  CPL+ ++C K  G YW L+
Sbjct: 1345 LSMQLQSLAYLEELEIVDCPKLKSLPRGCLPHALGRFSIRDCPLMTQRCSKLKGVYWPLI 1404

Query: 947  THIPRVEI 954
            +HIP VEI
Sbjct: 1405 SHIPCVEI 1412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766392|emb|CAN67818.1| hypothetical protein VITISV_007674 [Vitis vinifera]

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 359/981 (36%), Positives = 511/981 (52%), Gaps = 117/981 (11%)

Query: 1    MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQH 60
            MHDLV+DLA++  GE+ F++E   E N+QQ  S+  RH S+IRG YD  ++F   Y +++
Sbjct: 505  MHDLVNDLAKFVGGEICFSLEENLEGNQQQTISKKARHSSFIRGSYDVFKKFEAFYGMEN 564

Query: 61   LRTFLPVILSNSKPGY--LAPSMLPKLL-KLQSLRVFSLRGYRILELPDSVGDLRYLRYL 117
            LRTF+ + +  S  GY  L+  +L  L+ KL+ LRV SL  YRI E+P S+GDL++LRYL
Sbjct: 565  LRTFIALPIDASW-GYDWLSNKVLEGLMPKLRRLRVLSLSTYRISEIPSSIGDLKHLRYL 623

Query: 118  NLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPV 177
            NLS T+++ LP+S+  LYNL +L+L +C +L +L   + NL  L HL  +NT +LEEMP+
Sbjct: 624  NLSRTKVKWLPDSLGNLYNLETLILSNCSKLIRLALSIENLNNLRHLDVTNT-NLEEMPL 682

Query: 178  GIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKE 237
             I +L  LQ L  F+VGKD+G  ++EL+ +  L+  LCISNLENV ++ DA DA L++KE
Sbjct: 683  RICKLKSLQVLSKFIVGKDNGLNVKELRNMPHLQDGLCISNLENVANVQDARDASLNKKE 742

Query: 238  NLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKL 297
             L+EL + W+     S  A  ++ VLD L+PH NL +  I  YGG +FP W+GD SFSK+
Sbjct: 743  KLEELTIEWSAGLDDSHNARNQIDVLDSLQPHFNLNKLKIGYYGGPEFPPWIGDVSFSKM 802

Query: 298  VTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDD--SPIPFPRLETLRF 355
            V +   NC  CT+LP +G LP LKH+ + G+++VK +G EFYG+      PFP LE+L F
Sbjct: 803  VDINLVNCRNCTSLPCLGWLPMLKHVRIEGLNEVKIVGREFYGETCLPNKPFPSLESLSF 862

Query: 356  EDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVS 415
              + +WED     S    E +P L  L I+ C KL    P +LP+L  L I+ C + +  
Sbjct: 863  SAMSQWED---WESPSLSEPYPCLLHLEIINCPKLIKKLPTNLPSLVHLSIDTCPQWVSP 919

Query: 416  VSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEEL-I 474
            +  LP+L K  +  C + V  S    L S   +          L       L  L+ L I
Sbjct: 920  LERLPSLSKLRVGDCNEAVLRSGL-ELPSLTELRIERIVGLTRLHEGCMQLLSGLQVLDI 978

Query: 475  LSTKEQTYIWKS-HDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLS 533
                E T +W++  DG+ Q       L+  SCP+L SL  E+EK    +L   L+ L++ 
Sbjct: 979  DRCDELTCLWENGFDGIQQ-------LQTSSCPELVSL-GEKEK---HKLPSKLQSLKIL 1027

Query: 534  YCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWM 593
             C  L KLP     L+ L E+EIY C  LVSFPE+  P  L+++ I SC+ L+ LP+  M
Sbjct: 1028 RCNNLEKLPNGLHRLTCLGELEIYNCPKLVSFPELGFPPMLRRLVIVSCEGLRCLPDWMM 1087

Query: 594  CDTNSS--------LEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQC 645
               + S        LE LEI  C SL      +LP +LK+L+I  C+ + +L        
Sbjct: 1088 VMKDGSNNGSDVCLLEYLEIDRCPSLIGFPEGELPTTLKQLRIWECEKLESLPGGMMHHD 1147

Query: 646  SSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLES 705
            S+    TS  L  LEI+ CPSLT                 G  P +LK L +W C++LES
Sbjct: 1148 SNTTTATSGGLHVLEIWDCPSLTF-------------FPTGKFPSTLKKLQIWDCAQLES 1194

Query: 706  IAE--MLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAK 763
            I++     NN+SLE ++I     L+ +P  L+   +L+E+ I +C N+   P        
Sbjct: 1195 ISKETFHSNNSSLEYLSIRSSPCLKIVPDCLY---KLRELEINNCENVELLPHQLQNLTA 1251

Query: 764  LAMLAIYNCKRLEA-LPK-GLHNLKSLQELRIGKGVALPSLEEDG-----LPTNLHVLLI 816
            L  L IY C+ ++  L + GL  L SL++L IG      +   DG     LPT L  L I
Sbjct: 1252 LTSLGIYRCENIKTPLSRWGLATLTSLKKLTIGGIFPRVASFSDGQRPLILPTTLTFLFI 1311

Query: 817  NGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYL 876
                          + F    SL  L +                           SL  L
Sbjct: 1312 --------------QDFQNLKSLSSLALQTL-----------------------TSLEKL 1334

Query: 877  RIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCR 936
             IE  P LE                        + P +GLP +L +L I  CPL++++C 
Sbjct: 1335 LIEDCPKLE-----------------------SFCPREGLPDTLSRLYIKDCPLLKQRCS 1371

Query: 937  KDGGQYWDLLTHIPRVEISGK 957
            K  GQ W  + HIP V I  K
Sbjct: 1372 KRKGQDWPNIAHIPYVRIDDK 1392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487225|ref|XP_002268551.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera]

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 363/968 (37%), Positives = 512/968 (52%), Gaps = 102/968 (10%)

Query: 1    MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQH 60
            MHDL++DLAQ  AGE+YF ++   E NKQ   S   RH S+ R   +  ++F   + ++ 
Sbjct: 498  MHDLINDLAQSVAGEIYFHLDGAWENNKQSTISEKTRHSSFNRQHSETQRKFEPFHKVKC 557

Query: 61   LRTF--LPVILSNSKPGYLAPSMLPKLLK-LQSLRVFSLRGYRILELPDSVGDLRYLRYL 117
            LRT   LP+       GY++  +L  LLK ++ LRV SL GY+I  LPDS+G+L+YLRYL
Sbjct: 558  LRTLVALPMDQPVFSSGYISSKVLDDLLKEVKYLRVLSLSGYKIYGLPDSIGNLKYLRYL 617

Query: 118  NLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPV 177
            NLSG+ IR LP+SV  LYNL +L+L DC  L  L   +GNL+ L HL   +T  L+EMP 
Sbjct: 618  NLSGSSIRRLPDSVCHLYNLQALILSDCKDLTTLPVGIGNLINLRHLHIFDTWKLQEMPS 677

Query: 178  GIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKE 237
              G LT LQTL  F+VG+ +  GLRELK L  LRG L I  L NV +I D  DA L+ K 
Sbjct: 678  QTGNLTKLQTLSKFIVGEGNNLGLRELKNLFDLRGQLSILGLHNVMNIRDGRDANLESKH 737

Query: 238  NLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKL 297
             ++EL + W+     SR    E  VL+ L+PH NL++  I  YGG  FP W+ D SF  +
Sbjct: 738  GIEELTMEWSDDFGASRNEMHERNVLEQLRPHRNLKKLTIASYGGSGFPNWMKDPSFPIM 797

Query: 298  VTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFED 357
              L  K+C  CT+LP++GQ+ SLK L ++GMS+V+ +  EFYG     PFP LE+L FE 
Sbjct: 798  THLILKDCKRCTSLPALGQISSLKVLHIKGMSEVRTINEEFYGGIVK-PFPSLESLTFEV 856

Query: 358  LQEWEDSI-PHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSV 416
            + EWE    P   ++G E FP LR L I  C KL     + LP                 
Sbjct: 857  MAEWEYWFCPDAVNEG-ELFPCLRLLTIRDCRKL-----QQLP----------------- 893

Query: 417  SSLPALCKFIISGCKKVVWESAT-GHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELIL 475
            + LP+  K  IS C  + + S+    LG Q             L   LK         +L
Sbjct: 894  NCLPSQVKLDISCCPNLGFASSRFASLGEQR------------LPCNLK---------ML 932

Query: 476  STKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYC 535
               +   + K  +G LQ +  L+ L+I  CP L+            +L   L+ L +  C
Sbjct: 933  RIHDDANLEKLPNG-LQTLTCLEQLDITGCPSLRCF-------PNCELPTTLKSLCIKDC 984

Query: 536  EGLVKLPQSSLSLSS---LREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAW 592
            + L  LP+  +   S   L E++I GC  L SFP+  LP  L+++E+S C  LKSLP  +
Sbjct: 985  KNLEALPEGMMHHDSTCCLEELKIEGCPRLESFPDTGLPPLLRRLEVSECKGLKSLPHNY 1044

Query: 593  MCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYT 652
               ++ +LE LEIS C SL      +LP +LK + I  C+N+ +L   EG+        +
Sbjct: 1045 ---SSCALESLEISDCPSLRCFPNGELPTTLKSIWIQDCENLESLP--EGMM----HHDS 1095

Query: 653  SSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAE-MLD 711
            +  LE + I  CP L       ELP+TL+ LE+             GC  LES++E M  
Sbjct: 1096 TCCLEEVIIMGCPRLESFPDTGELPSTLKKLEIC------------GCPDLESMSENMCP 1143

Query: 712  NNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYN 771
            NN++L+ + + G  NL+ LP  LH+L  LQ   I +C  L   P  GL    L  L I  
Sbjct: 1144 NNSALDNLVLEGYPNLKILPECLHSLKSLQ---IINCEGLECFPARGLSTPTLTSLRIEG 1200

Query: 772  CKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGR 831
            C+ L++LP  + +LKSL++L I     + S  EDG+P NL  L I+    + K +     
Sbjct: 1201 CENLKSLPHQMRDLKSLRDLTILFCPGVESFPEDGMPPNLISLEISYCENLKKPI----S 1256

Query: 832  GFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSI 891
             FH  +SL  LTI N   DMVSF      +    +LP+  SLT LRI    +L  L  S+
Sbjct: 1257 AFHTLTSLFSLTIENVFPDMVSF------RDEECLLPI--SLTSLRITAMESLAYL--SL 1306

Query: 892  VDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEKCRKDGGQYWDLLTHIPR 951
             +L +L  L +  CP L       +P++L +L I  CP++EE+  K+ G+YW  + HIP 
Sbjct: 1307 QNLISLQYLEVATCPNLGSL--GSMPATLEKLEIWCCPILEERYSKEKGEYWPKIAHIPC 1364

Query: 952  VEISGKWV 959
            + + G+++
Sbjct: 1365 IAMRGQFI 1372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487424|ref|XP_002271822.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera]

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 376/1000 (37%), Positives = 536/1000 (53%), Gaps = 88/1000 (8%)

Query: 1    MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQH 60
            MHDL+ DLA+ A+GE+ F +E T + N+Q   S+  RH S+IRG +D  ++F     ++H
Sbjct: 502  MHDLICDLARVASGEICFCLEDTLDSNRQSTISKETRHSSFIRGKFDAFKKFEAFQGLEH 561

Query: 61   LRTFLPVILSNSKPGYLAPSMLPKLL--KLQSLRVFSLRGYRILELPDSVGDLRYLRYLN 118
            LRTF+ + +  +       S++   L  K + LRV SL  Y I ELPDS+G L++LRYLN
Sbjct: 562  LRTFVALPIQGTFTESFVTSLVCDHLVPKFRQLRVLSLSEYMIFELPDSIGGLKHLRYLN 621

Query: 119  LSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVG 178
            LS T+I+ LP+SV+ LYNL +L+L +C  L +L +++GNL+ L HL N    SL++MP  
Sbjct: 622  LSFTQIKLLPDSVTNLYNLQTLILSNCKHLTRLPSNIGNLISLRHL-NVVGCSLQDMPQQ 680

Query: 179  IGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKEN 238
            IG+L  LQTL  F+V K    G++ELK L+ LRG +CIS LENV  + DA DA L  K N
Sbjct: 681  IGKLKKLQTLSDFIVSKRGFLGIKELKDLSHLRGEICISKLENVVDVQDARDANLKAKLN 740

Query: 239  LKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLV 298
            ++ L + W+     S + + EM VL  L+PHT+L++  I+GYGG +FP W+ D S+ KLV
Sbjct: 741  VERLSMIWSKELDGSHDEDAEMEVLLSLQPHTSLKKLNIEGYGGRQFPNWICDPSYIKLV 800

Query: 299  TLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDS--PIPFPRLETLRFE 356
             L    C  C ++PSVGQLP LK L ++ M  VK +G EF G  S    PF  LE+L FE
Sbjct: 801  ELSLIGCIRCISVPSVGQLPFLKKLVIKRMDGVKSVGLEFEGQVSLHAKPFQCLESLWFE 860

Query: 357  DLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSV 416
            D+ EWE+          E F  L +L I  C +L    P HL +L  L I  C E++V  
Sbjct: 861  DMMEWEE-----WCWSKESFSCLHQLEIKNCPRLIKKLPTHLTSLVKLNIGNCPEIMVRR 915

Query: 417  -SSLPALCKFIISGCKKVVWESATGHLG----SQNSVVCRDTSNQVFLA-------GPLK 464
             + LP+L +  I  C +++ +            + S    D ++ ++L          L+
Sbjct: 916  PTHLPSLKELNIYYCPEMMPQFENHEFFIMPLREASRSAIDITSHIYLDVSGISQLSRLQ 975

Query: 465  PQ----LPKLEELILSTKEQTY-IWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQ 519
            P+    LP+LE L +    Q   +W   DGL   + +L  L I S  +L SL  EEE  +
Sbjct: 976  PEFMQSLPRLELLEIDNSGQLQCLWL--DGL--GLGNLSRLRILSSDQLVSLGGEEE--E 1029

Query: 520  QQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEI 579
             Q L   L++L +  C+ L KLP    S +SL E+ I  C  LVSFPE   P  L+ + I
Sbjct: 1030 VQGLPYNLQHLEIRKCDKLEKLPHGLQSYTSLAELIIEDCPKLVSFPEKGFPLMLRGLAI 1089

Query: 580  SSCDALKSLPEAWMCDTNSS----LEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIR 635
            S+C++L SLP+  M   +S+    LE LEI  C SL      QLP +L+RL I  C+ + 
Sbjct: 1090 SNCESLSSLPDGMMMRNSSNNMCHLEYLEIEECPSLICFPKGQLPTTLRRLFISDCEKLV 1149

Query: 636  TLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLL 695
            +L  E+   C+         +E L +  CPSLT                 G LPP+LK L
Sbjct: 1150 SLP-EDIDVCA---------IEQLIMKRCPSLTGF--------------PGKLPPTLKKL 1185

Query: 696  LVWGCSKLESIAEML----DNNTS---LEKINISGCGNLQTLPSGLHNLCQLQEISIASC 748
             +WGC KL+S+ E +     NNT+   L+ ++IS C +L + P+G      L+ I+I +C
Sbjct: 1186 WIWGCEKLQSLPEGIMHHHSNNTTNGGLQILDISQCSSLTSFPTGKFP-STLKSITIDNC 1244

Query: 749  GNLVSSPEGGLPCAKLAM--LAIYNCKRLEALPKGLHNLKSLQELRIGKGVAL---PSLE 803
              +    E    C   A+  L+I     L+ +P  L+NLK   +LRI K   L   P L 
Sbjct: 1245 AQMQPISEEMFHCNNNALEKLSISGHPNLKTIPDCLYNLK---DLRIEKCENLDLQPHLL 1301

Query: 804  EDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGS 863
             +   T+L  L I  N E  K  +    G  R +SLR LTI     +  SFP        
Sbjct: 1302 RN--LTSLSSLQIT-NCETIKVPLSEW-GLARLTSLRTLTIGGIFLEATSFP-----NHH 1352

Query: 864  GTVLPLPASLTYLRIEGFPNLERLTS-SIVDLQNLTGLVLGNCPKLKYF-PEKGLPSSLL 921
              +  LP +L  L I  F NLE L   S+  L +L  L +  CPKL+ F P +GLP  L 
Sbjct: 1353 HHLFLLPTTLVELSISNFQNLESLAFLSLQMLTSLRKLDVFQCPKLQSFIPREGLPDMLS 1412

Query: 922  QLSINRCPLIEEKCRKDGGQYWDLLTHIPRVEISGKWVFD 961
            +L I  CPL+ ++C K+ G+ W  + HIP V+I GK + +
Sbjct: 1413 ELYIRDCPLLIQRCSKEKGEDWPKIAHIPCVKIDGKLILE 1452

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450003|ref|XP_002272221.1| PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 378/1003 (37%), Positives = 537/1003 (53%), Gaps = 95/1003 (9%)

Query: 1    MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQH 60
            MHDL+ DLA+ A+GE+ F +E   E N+Q   S+  RHLS+IRG +D +++F    +++H
Sbjct: 502  MHDLICDLARVASGEICFCLEDNLESNRQSTISKETRHLSFIRGKFDVLKKFEAFQELEH 561

Query: 61   LRTFLPVILSNSKPGYLAPSMLPKLL--KLQSLRVFSLRGYRILELPDSVGDLRYLRYLN 118
            LRTF+ + +  +       S++   L  K Q LRV SL  Y I ELPDS+G L++LRYLN
Sbjct: 562  LRTFVALPIHGTFTESFVTSLVCDHLVPKFQQLRVLSLSEYVIFELPDSIGGLKHLRYLN 621

Query: 119  LSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVG 178
            LS T+I+ LP+SV+ LYNL +L+L +C  L +L +++GNL+ L HL      SL+EMP  
Sbjct: 622  LSFTQIKLLPDSVTNLYNLQTLILSNCKHLTRLPSNIGNLISLRHLDVVGC-SLQEMPQQ 680

Query: 179  IGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKEN 238
            IG+L  LQTL  F+V K    G++ELK L+ LRG +CIS LENV  + DA DA L+ K N
Sbjct: 681  IGKLKKLQTLSDFIVAKRGFLGIKELKDLSNLRGKICISKLENVVDVQDARDANLNTKLN 740

Query: 239  LKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLV 298
            ++ L + W+     S   +TEM VL  L+PHTNL++  I+ YGG KFP W+ D S++KLV
Sbjct: 741  VENLSMIWSKELVDSHNEDTEMEVLLSLQPHTNLKELRIEYYGGRKFPNWMCDPSYTKLV 800

Query: 299  TLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDS--PIPFPRLETLRFE 356
             L    C  C +LPSVGQLP LK L ++ M  VK +G EF G  S    PF  LE+L FE
Sbjct: 801  ALSLIGCIRCISLPSVGQLPLLKKLVIKKMDGVKSVGLEFEGQVSLHATPFQCLESLWFE 860

Query: 357  DLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSV 416
            D++ WE+          + F +LR+L I  C +L    P HL +L  L IE C E++V +
Sbjct: 861  DMKGWEE-----WCWSTKSFSRLRQLEIKNCPRLIKKLPTHLTSLVKLNIENCPEMMVPL 915

Query: 417  -SSLPALCKFIISGCKKVVWESATGHL------GSQNSVVCRDTSNQVFLA-------GP 462
             + LP+L +  I  C ++  +            G+  S +  D ++ ++L          
Sbjct: 916  PTDLPSLEELNIYYCPEMTPQFDNHEFLIMPQRGASRSAI--DITSHIYLEVSGISGLSR 973

Query: 463  LKPQ----LPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKD 518
            L+P+    LP+LE L +    Q    +        + +L  L I  C +L SL  EEE  
Sbjct: 974  LQPEFMQSLPRLELLEIDNSGQL---QCLWLDGLGLGNLSLLRILGCNQLVSLGEEEE-- 1028

Query: 519  QQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIE 578
              Q L   L+ L +S C+ L KLP+     +SL E+ I  C  LVSFPE   P  L+ + 
Sbjct: 1029 --QGLPYNLQRLEISKCDKLEKLPRGLQIYTSLAELIIEDCPKLVSFPEKGFPLMLRGLS 1086

Query: 579  ISSCDALKSLPEAWMCDTNSS----LEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNI 634
            I +C++L SLP+  M   +S+    LE LEI  C SL      +LP +L+RL I +C+N+
Sbjct: 1087 ICNCESLSSLPDRMMMRNSSNNVCHLEYLEIEECPSLICFPKGRLPTTLRRLFISNCENL 1146

Query: 635  RTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKL 694
              +++ E I   +        LE L I  CPSL   F K            G LPP+LK 
Sbjct: 1147 --VSLPEDIHVCA--------LEQLIIERCPSLIG-FPK------------GKLPPTLKK 1183

Query: 695  LLVWGCSKLESIAEML----DNNTS---LEKINISGCGNLQTLPSGLHNLCQLQEISIAS 747
            L + GC KLES+ E +     NNT+   L+ ++IS C +L + P+G      L+ I+I +
Sbjct: 1184 LYIRGCEKLESLPEGIMHHHSNNTANCGLQILDISQCSSLASFPTGKFP-STLKSITIDN 1242

Query: 748  CGNLVSSPEGGLPC--AKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVAL---PSL 802
            C  L    E    C   +L  L+I     L+ +P  L+NLK   +LRI K   L   P L
Sbjct: 1243 CAQLQPISEEMFHCNNNELEKLSISRHPNLKTIPDCLYNLK---DLRIEKCENLDLQPHL 1299

Query: 803  EEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKG 862
              +   T+L  L I     I   + E   G  R +SLR LTI     +  SF        
Sbjct: 1300 LRN--LTSLASLQITNCENIKVPLSE--WGLARLTSLRTLTIGGIFPEATSF-----SNH 1350

Query: 863  SGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLV---LGNCPKLKYF-PEKGLPS 918
               +  LP +L  L I  F NLE L  + + LQ LT L    +  CPKL+ F P +GLP 
Sbjct: 1351 HHHLFLLPTTLVELCISRFQNLESL--AFLSLQTLTSLRKLDVFRCPKLQSFMPREGLPD 1408

Query: 919  SLLQLSINRCPLIEEKCRKDGGQYWDLLTHIPRVEISGKWVFD 961
             L +L I  CPL+ ++C K+ G+ W  + HIP V+I  K + +
Sbjct: 1409 MLSELYIRDCPLLIQRCSKEKGEDWPKIAHIPCVKIDDKLILE 1451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	962
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.424	0.286	0.401	1.7e-92
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.417	0.381	0.402	1.2e-77
UNIPROTKB|O48647	1802	O48647 "XA1" [Oryza sativa (ta	0.268	0.143	0.277	1.1e-23
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.314	0.255	0.257	1.1e-15
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.357	0.173	0.262	3.1e-13
TAIR|locus:2053405	1215	AT2G14080 [Arabidopsis thalian	0.373	0.295	0.248	2.9e-14
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.303	0.245	0.272	1.6e-13
TAIR|locus:2129236	1301	SNC1 "SUPPRESSOR OF NPR1-1, CO	0.385	0.285	0.239	2.9e-08
TAIR|locus:2117617	549	PIRL4 "plant intracellular ras	0.107	0.187	0.377	3.6e-12
TAIR|locus:2205804	1556	AT1G27180 [Arabidopsis thalian	0.401	0.248	0.238	6.9e-08

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 688 (247.2 bits), Expect = 1.7e-92, Sum P(2) = 1.7e-92
 Identities = 171/426 (40%), Positives = 244/426 (57%)

Query:     1 MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQH 60
             MHDL++DLA+  +G+  F +E   + N  +  S   RH S+ R   D    F  +   + 
Sbjct:   487 MHDLMNDLAKAVSGDFCFRLE---DDNIPEIPST-TRHFSFSRSQCDASVAFRSICGAEF 542

Query:    61 LRTFLPVILSNSKPGY-LAPSMLPKLLK-LQSLRVFSLRGYRILELPDSVGDLRYLRYLN 118
             LRT LP     S     L   +L  LL  L  LR+ SL  Y+I  LP S+  L+ LRYL+
Sbjct:   543 LRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSLKGLKLLRYLD 602

Query:   119 LSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVG 178
             LS T+I+ LPE V  L NL +LLL +C  L  L   +  L+ L  L    T  L EMP G
Sbjct:   603 LSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGTP-LVEMPPG 661

Query:   179 IGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKEN 238
             I +L  LQ L +FV+G+ SG+GL ELK L+ LRGTL IS L+NV    +A+DA L RK  
Sbjct:   662 IKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPF 721

Query:   239 LKELWLRWTLYGS------YSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDS 292
             L  L L+WT+ GS      ++  A  +  VL ML+PH +L+ FCI+ Y G  FP WLGDS
Sbjct:   722 LDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKWLGDS 781

Query:   293 SFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFY-GDDSP--IPFPR 349
             SF  + ++   +C++C +LP VGQLPSLK+L++   + ++++G +F+ G+++   +PF  
Sbjct:   782 SFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGVPFQS 841

Query:   350 LETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGC 409
             L+ L+F  +  W++ I      G+  FP L++L I RC  L+  FPE LP+   + I  C
Sbjct:   842 LQILKFYGMPRWDEWICPELEDGI--FPCLQKLIIQRCPSLRKKFPEGLPSSTEVTISDC 899

Query:   410 EELLVS 415
                 VS
Sbjct:   900 PLRAVS 905

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
 Identities = 171/425 (40%), Positives = 248/425 (58%)

Query:     1 MHDLVSDLAQWAAGEMYFTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQH 60
             MHD +++LAQ+A+GE  F+ ++      Q   S   R+LSY+R +Y     F  L +++ 
Sbjct:   492 MHDFINELAQFASGE--FSSKFEDGCKLQ--VSERTRYLSYLRDNYAEPMEFEALREVKF 547

Query:    61 LRTFLPVILSNSKPGYLAPSMLP-KLLK-LQSLRVFSLRGYRILELP-DSVGDLRYLRYL 117
             LRTFLP+ L+NS        M+  KLL  L  LRV SL  Y+I  LP D   ++ + R+L
Sbjct:   548 LRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNISHARFL 607

Query:   118 NLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPV 177
             +LS TE+  LP+S+  +YNL +LLL  C  L++L  D+ NL+ L +L    TK L +MP 
Sbjct:   608 DLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGTK-LRQMPR 666

Query:   178 GIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKE 237
               GRL  LQTL +F V    GS + EL  L  L G L I  L+ V  + DA +A L+ K+
Sbjct:   667 RFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAEANLNSKK 726

Query:   238 NLKELWLRWTLYGSYSREAET-------EMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLG 290
             +L+E+   W   GS S E  T       E  V + L+PH ++E+  I+ Y G +FP WL 
Sbjct:   727 HLREIDFVWRT-GSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFPDWLS 785

Query:   291 DSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPI----- 345
             D SFS++V ++ + C  CT+LPS+GQLP LK L + GM  ++ +G +FY  D  +     
Sbjct:   786 DPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFYFSDQQLRDQDQ 845

Query:   346 -PFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEML 404
              PF  LETLRF++L +W++ +    ++G + FP L++L ILRC +L GT P  LP+L  L
Sbjct:   846 QPFRSLETLRFDNLPDWQEWLDVRVTRG-DLFPSLKKLFILRCPELTGTLPTFLPSLISL 904

Query:   405 VIEGC 409
              I  C
Sbjct:   905 HIYKC 909

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]

 Score = 177 (67.4 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
 Identities = 76/274 (27%), Positives = 129/274 (47%)

Query:     1 MHDLVSDLAQWAAGEMYFTMEYT--SEVNKQQRFSRYLRHLSYIRGDYDGVQR---FGD- 54
             MHDL+ DLAQ  +   Y T++ +  +E+    R    +   +Y +  Y  + R   F   
Sbjct:   627 MHDLMHDLAQKVSQTEYATIDGSECTELAPSIRHLSIVTDSAYRKEKYRNISRNEVFEKR 686

Query:    55 LYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRG-YRILE-LPDSVGDLR 112
             L  ++       ++L      +          + Q LR+  +   Y   +    S+ +  
Sbjct:   687 LMKVKSRSKLRSLVLIGQYDSHFFKYFKDAFKEAQHLRLLQITATYADSDSFLSSLVNST 746

Query:   113 YLRYLNLSGTEI-RTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKS 171
             +LRYL +   E  RTLP S+ K Y+L  L +     + ++  D+ NL+ L HL   +   
Sbjct:   747 HLRYLKIVTEESGRTLPRSLRKYYHLQVLDIGYRFGIPRISNDINNLLSLRHLVAYD--E 804

Query:   172 LEEMPVGIGRLTCLQTLCSFVVGKD-SGSGLRELKLLTQLRGTLCISNLENVKHIVDAED 230
             +      IG++T LQ L +F+V  + SG  + +LK + +L   L +S LENV+   +A  
Sbjct:   805 VCSSIANIGKMTSLQELGNFIVQNNLSGFEVTQLKSMNKLV-QLSVSQLENVRTQEEACG 863

Query:   231 AQLDRKENLKELWLRWT-LYGSY-SREA-ETEMG 261
             A+L  K++L++L L W   +  Y S E+ E E G
Sbjct:   864 AKLKDKQHLEKLHLSWKDAWNGYDSDESYEDEYG 897

GO:0006915 "apoptotic process" evidence=IGI

GO:0006952 "defense response" evidence=IGI

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 83/322 (25%), Positives = 145/322 (45%)

Query:   535 CEGLVKLPQXXXXXXXXREIEIYGCRSLVSFPE-VALPSKLKKIEISSCDALKSLPEAWM 593
             C  LV+LP          E+++  C SLV  P  +   + LKK+ ++ C +L  LP ++ 
Sbjct:   690 CLSLVELPSSIGNATNLLELDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSLVKLPSSF- 748

Query:   594 CDTNSSLEILEISGCDSLTYI-AGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYT 652
                 +SL+ L +SGC SL  I + +    +LK++    C ++  L    G   +    + 
Sbjct:   749 -GNVTSLKELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNNTNLKELH- 806

Query:   653 SSLLEHLEIYSCPSLTCIFSKNE---LPATLESLE---VGNLPPSLKLLLVWGCSKLESI 706
               LL    +  CPS     ++ E   L   L  ++   +GN+  +L+ L +  CS L  +
Sbjct:   807 --LLNCSSLMECPSSMLNLTRLEDLNLSGCLSLVKLPSIGNVI-NLQSLYLSDCSSLMEL 863

Query:   707 AEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAM 766
                ++N T+L+ + + GC NL  LPS + N+  LQ + +  C +L   P        L  
Sbjct:   864 PFTIENATNLDTLYLDGCSNLLELPSSIWNITNLQSLYLNGCSSLKELPSLVENAINLQS 923

Query:   767 LAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLIN-GNMEIWKS 825
             L++  C  L  LP  +  + +L  L +    +L  L     P     L+++ G+ E   S
Sbjct:   924 LSLMKCSSLVELPSSIWRISNLSYLDVSNCSSLLELNLVSHPVVPDSLILDAGDCE---S 980

Query:   826 MIERGRGFHRFSSLRQLTIMNC 847
             +++R   F +   +  L   NC
Sbjct:   981 LVQRLDCFFQNPKI-VLNFANC 1001

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
 Identities = 105/400 (26%), Positives = 181/400 (45%)

Query:   534 YCEGLVKLPQXXXXXXXXREIEIYGCRSLVSFPEVALP-SKLKKIEISSCDALKSLPEAW 592
             YC  LVK+P         + + ++GC S++  P      + L+ ++++ C +L  LP + 
Sbjct:   696 YCVSLVKVPSCVGKLGKLQVLCLHGCTSILELPSFTKNVTGLQSLDLNECSSLVELPSS- 754

Query:   593 MCDTNSSLEILEISGCDSLTYIA-GVQLPPSLKRLKICHCDNIRTLTV---EEGIQ---- 644
                   +L+ L++ GC  L  +   +    +LK+  +  C ++  L        +Q    
Sbjct:   755 -IGNAINLQNLDL-GCLRLLKLPLSIVKFTNLKKFILNGCSSLVELPFMGNATNLQNLDL 812

Query:   645 --CSSGRRYTSSL-----LEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLV 697
               CSS     SS+     L++L++ +C SL       +LP+      +GN   +L++L +
Sbjct:   813 GNCSSLVELPSSIGNAINLQNLDLSNCSSLV------KLPSF-----IGNAT-NLEILDL 860

Query:   698 WGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG 757
               CS L  I   + + T+L ++++SGC +L  LPS + N+ +LQ +++ +C NLV  P  
Sbjct:   861 RKCSSLVEIPTSIGHVTNLWRLDLSGCSSLVELPSSVGNISELQVLNLHNCSNLVKLPSS 920

Query:   758 GLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRI---GKGVALPSLEEDGLPTNLHVL 814
                   L  L +  C  L  LP  + N+ +LQEL +      V LPS    G   NLH+L
Sbjct:   921 FGHATNLWRLDLSGCSSLVELPSSIGNITNLQELNLCNCSNLVKLPS--SIG---NLHLL 975

Query:   815 LINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKG----SGTVLP-L 869
                      K  +E         SL +L + +C     SFP  + +       GT +  +
Sbjct:   976 FTLSLARCQK--LEALPSNINLKSLERLDLTDCSQ-FKSFPEISTNIECLYLDGTAVEEV 1032

Query:   870 PAS------LTYLRIEGFPNLERLTSSIVDLQNLTGLVLG 903
             P+S      LT L +  F  L+   S ++D+  +T L  G
Sbjct:  1033 PSSIKSWSRLTVLHMSYFEKLKEF-SHVLDI--ITWLEFG 1069

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 2.9e-14, P = 2.9e-14
 Identities = 100/402 (24%), Positives = 176/402 (43%)

Query:   553 EIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLT 612
             E+ ++G +    + E+     LK++++ S   LK LP+     + ++LE+L ++GC SL 
Sbjct:   655 ELNMWGSKLEKLWEEIQPLRNLKRMDLFSSKNLKELPDL---SSATNLEVLNLNGCSSLV 711

Query:   613 YIA-GVQLPPSLKRLKICHCDNIRTLTVEEG----IQ------CSSGRRYTSSLLEHLEI 661
              +   +     L +L++  C ++  L    G    +Q      C +     SS+     +
Sbjct:   712 ELPFSIGNATKLLKLELSGCSSLLELPSSIGNAINLQTIDFSHCENLVELPSSIGNATNL 771

Query:   662 YSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINI 721
                  L+C  S  ELP++     +GN     KL L+  CS L+ +   + N T+L+++++
Sbjct:   772 KEL-DLSCCSSLKELPSS-----IGNCTNLKKLHLIC-CSSLKELPSSIGNCTNLKELHL 824

Query:   722 SGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPE--GGLPCAKLAMLAIYNCKRLEALP 779
             + C +L  LPS + N   L+++ +A C +LV  P   G     K+  L   +C  L  LP
Sbjct:   825 TCCSSLIKLPSSIGNAINLEKLILAGCESLVELPSFIGKATNLKILNLGYLSC--LVELP 882

Query:   780 KGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLING----NMEIWKSMIERGRGFHR 835
               + NL  L ELR+ +G     L+   LPTN+++  +N     +  + K+         R
Sbjct:   883 SFIGNLHKLSELRL-RGCK--KLQV--LPTNINLEFLNELDLTDCILLKTFPVISTNIKR 937

Query:   836 FSSLRQLTIMNCDDDMVSFPPKAD-----DKGSGTVLPLPASLTYLRIEGFPNLERLTSS 890
                LR   I      + S+P   D      +       +   +T L +    N+  +T  
Sbjct:   938 LH-LRGTQIEEVPSSLRSWPRLEDLQMLYSENLSEFSHVLERITVLELSDI-NIREMTPW 995

Query:   891 IVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIE 932
             +  +  L  L L  C KL   P+  L  SL+ L    C  +E
Sbjct:   996 LNRITRLRRLKLSGCGKLVSLPQ--LSDSLIILDAENCGSLE 1035

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 86/316 (27%), Positives = 149/316 (47%)

Query:   552 REIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNS-SLEILEISGCDS 610
             R++++    +L   P+++    L+K+ +S+C +L  LP    C  N+ +LE L+++GC S
Sbjct:   679 RQMDLSYSVNLKELPDLSTAINLRKLILSNCSSLIKLPS---CIGNAINLEDLDLNGCSS 735

Query:   611 LTYIAGVQLPPSLKRLKICHCDNIRTL--TVEEGIQCSS-GRRYTSSLLE-HLEIYSCPS 666
             L  +       +L++L + +C N+  L  ++   I        Y SSL+     I +  +
Sbjct:   736 LVELPSFGDAINLQKLLLRYCSNLVELPSSIGNAINLRELDLYYCSSLIRLPSSIGNAIN 795

Query:   667 LTCIFSKNELPATLE-SLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCG 725
             L  I   N     LE    +GN   +L+ L +  C+KL  +   + N  +L+ + +  C 
Sbjct:   796 LL-ILDLNGCSNLLELPSSIGNAI-NLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDCS 853

Query:   726 NLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNL 785
             +L  LPS + N   L  +++++C NLV  P       KL  L +  C +LE LP  + NL
Sbjct:   854 SLLELPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPINI-NL 912

Query:   786 KSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNM--EIWKSMIERGRGFHRFSSLRQLT 843
             +SL  L +     L    E  + TN+  L + G    E+  S+    R + R   L    
Sbjct:   913 ESLDILVLNDCSMLKRFPE--ISTNVRALYLCGTAIEEVPLSI----RSWPRLDEL---- 962

Query:   844 IMNCDDDMVSFPPKAD 859
             +M+  D++V FP   D
Sbjct:   963 LMSYFDNLVEFPHVLD 978

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
 Identities = 99/413 (23%), Positives = 176/413 (42%)

Query:   534 YCEGLVKLPQXXXXXXXXREIEIYGCRSLVSFPE-VALPSKLKKIEISSCDALKSLPEAW 592
             Y   L ++P          E+++ GC+SLV+ P  +   +KL  +++S C  L+S P   
Sbjct:   622 YSNNLKEIPDLSLAINL-EELDLVGCKSLVTLPSSIQNATKLIYLDMSDCKKLESFPT-- 678

Query:   593 MCDTN-SSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRY 651
               D N  SLE L ++GC +L     +++  S     +   +    + VE+   C   +  
Sbjct:   679 --DLNLESLEYLNLTGCPNLRNFPAIKMGCS----DVDFPEGRNEIVVED---CFWNKNL 729

Query:   652 TSSLLEHLEIYS-CPSLTCIFSKNELP-ATLESLEVGNL---PPSLKLLLVWGCSKLESI 706
              + L ++L+  + C  + C F   +L    +   +   L     SL  L     S+ E++
Sbjct:   730 PAGL-DYLDCLTRC--MPCEFRPEQLAFLNVRGYKHEKLWEGIQSLGSLEGMDLSESENL 786

Query:   707 AEM--LDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKL 764
              E+  L   T LE + ++ C +L TLPS + NL +L  + +  C  L   P   +  + L
Sbjct:   787 TEIPDLSKATKLESLILNNCKSLVTLPSTIGNLHRLVRLEMKECTGLEVLPTD-VNLSSL 845

Query:   765 AMLAIYNCKRLEALPKGLHNL-------KSLQEL--RIGKGVALPSLEEDGLPTNLHVLL 815
               L +  C  L + P    N+        +++E+   IG    L  LE     T L VL 
Sbjct:   846 ETLDLSGCSSLRSFPLISTNIVWLYLENTAIEEIPSTIGNLHRLVRLEMKKC-TGLEVLP 904

Query:   816 INGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTY 875
              + N+   +++   G      SSLR   +++     +     A ++     L    +L  
Sbjct:   905 TDVNLSSLETLDLSG-----CSSLRSFPLISESIKWLYLENTAIEEIPD--LSKATNLKN 957

Query:   876 LRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRC 928
             L++    +L  L ++I +LQ L    +  C  L+  P     SSL+ L ++ C
Sbjct:   958 LKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLPIDVNLSSLMILDLSGC 1010

GO:0000166 "nucleotide binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=NAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IGI;IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2117617 PIRL4 "plant intracellular ras group-related LRR 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
 Identities = 40/106 (37%), Positives = 58/106 (54%)

Query:    81 MLPKLLK-LQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHS 139
             +LP  +  L SL    L   RI +LP+S+G+L  L YLNL   ++ +LP + S+L  L  
Sbjct:   260 VLPNTIGGLSSLTKLDLHSNRIGQLPESIGELLNLVYLNLGSNQLSSLPSAFSRLVRLEE 319

Query:   140 LLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCL 185
             L L  C+ L  L   +G+LV L  L +  T  +EE+P  IG  + L
Sbjct:   320 LDLS-CNNLPILPESIGSLVSLKKL-DVETNDIEEIPYSIGGCSSL 363

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
 Identities = 98/411 (23%), Positives = 177/411 (43%)

Query:   533 SYCEGLVKLPQXXXXXXXXREIEIYGCRSLVSFP-EVALPSKLKKIEISSCDALKSLPEA 591
             S C  L  LP+        +E+ + G  ++ + P  +    KL+K+ +  C +++ LP  
Sbjct:   922 SGCSNLSVLPENIGSMPCLKELLLDGT-AISNLPYSIFRLQKLEKLSLMGCRSIEELPSC 980

Query:   592 WMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTL--TVEEGIQCSSGR 649
                   +SLE L +         + +    +L++L +  C ++ T+  T+ + +      
Sbjct:   981 --VGYLTSLEDLYLDDTALRNLPSSIGDLKNLQKLHLMRCTSLSTIPETINK-LMSLKEL 1037

Query:   650 RYTSSLLEHLEIYSCPSLTCI--FSKNELPATLE-SLEVGNLPPSLKLLLVWGCSKLESI 706
                 S +E L I +  SL C+   S  +     +    +G L   L+L L    + +E++
Sbjct:  1038 FINGSAVEELPIET-GSLLCLTDLSAGDCKFLKQVPSSIGGLNSLLQLQL--DSTPIEAL 1094

Query:   707 AEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAM 766
              E + +   + ++++  C +L+ LP  +  +  L  +++    N+   PE       L  
Sbjct:  1095 PEEIGDLHFIRQLDLRNCKSLKALPKTIGKMDTLYSLNLVG-SNIEELPEEFGKLENLVE 1153

Query:   767 LAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVL--LINGNMEIWK 824
             L + NCK L+ LPK   +LKSL  L + + +     E  G  +NL VL  L      I +
Sbjct:  1154 LRMNNCKMLKRLPKSFGDLKSLHRLYMQETLVAELPESFGNLSNLMVLEMLKKPLFRISE 1213

Query:   825 SMIERGRGFHRFSSLRQL--TIMNCDD-DMVSFPPKADDKGSGTVLPLPASLTYLRIEGF 881
             S +       RF  +      ++  ++ D  S+  +   K    +  L + L  L + G 
Sbjct:  1214 SNVPGTSEEPRFVEVPNSFSKLLKLEELDACSW--RISGKIPDDLEKL-SCLMKLNL-GN 1269

Query:   882 PNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIE 932
                  L SS+V L NL  L L +C +LK  P   LP  L QL++  C  +E
Sbjct:  1270 NYFHSLPSSLVKLSNLQELSLRDCRELKRLPP--LPCKLEQLNLANCFSLE 1318

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00010803001 SubName- Full=Chromosome chr13 scaffold_286, whole genome shotgun sequence; (1418 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	962
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-13
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-09
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-09
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-06
PRK15386	426	PRK15386, PRK15386, type III secretion protein Gog	5e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 75.3 bits (185), Expect = 1e-13
 Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 36/245 (14%)

Query: 536 EGLVKL--PQSSL--------SLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDAL 585
           E LVKL    S L        SL+ LR I++ G ++L   P++++ + L+ +++S C +L
Sbjct: 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL 670

Query: 586 KSLPEAWMCDTNSSLEILEISGCDSLTYI-AGVQLPPSLKRLKICHCD----------NI 634
             LP +      + LE L++S C++L  +  G+ L  SL RL +  C           NI
Sbjct: 671 VELPSS--IQYLNKLEDLDMSRCENLEILPTGINL-KSLYRLNLSGCSRLKSFPDISTNI 727

Query: 635 RTLTVEEGIQCSSGRRYTSSL-LEHL-EIYSCPSLTCIFSKNELPAT-LESLEVGNLPPS 691
             L ++E    ++   + S+L LE+L E+  C   +    +   P T L ++    L PS
Sbjct: 728 SWLDLDE----TAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTM----LSPS 779

Query: 692 LKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNL 751
           L  L +     L  +   + N   LE + I  C NL+TLP+G+ NL  L+ + ++ C  L
Sbjct: 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL 838

Query: 752 VSSPE 756
            + P+
Sbjct: 839 RTFPD 843

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 61.0 bits (148), Expect = 2e-09
 Identities = 78/273 (28%), Positives = 116/273 (42%), Gaps = 40/273 (14%)

Query: 674 NELPATLESLEVGNLP----PS-------LKLLLVWGCSKLESIAEMLDNNTSLEKINIS 722
           + LP  L  L     P    PS       +KL +    SKLE + + + + T L  I++ 
Sbjct: 585 DYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQG--SKLEKLWDGVHSLTGLRNIDLR 642

Query: 723 GCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGL 782
           G  NL+ +P  L     L+ + ++ C +LV  P       KL  L +  C+ LE LP G+
Sbjct: 643 GSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI 701

Query: 783 HNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQL 842
            NLKSL  L +     L S  +  + TN+  L ++       + IE      R  +L +L
Sbjct: 702 -NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDE------TAIEEFPSNLRLENLDEL 752

Query: 843 TIMNCDDDMVSFPPKADDKGSGTVLP-------LPASLTYLRIEGFPNLERLTSSIVDLQ 895
            +     +M S      +K    V P       L  SLT L +   P+L  L SSI +L 
Sbjct: 753 ILC----EMKS------EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH 802

Query: 896 NLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRC 928
            L  L + NC  L+  P      SL  L ++ C
Sbjct: 803 KLEHLEIENCINLETLPTGINLESLESLDLSGC 835

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 60.3 bits (146), Expect = 5e-09
 Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 31/219 (14%)

Query: 527 LEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALK 586
           LE L+LS C  LV+LP S   L+ L ++++  C +L   P       L ++ +S C  LK
Sbjct: 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLK 718

Query: 587 SLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCS 646
           S P     D ++++  L++         A  + P +L        +N+  L + E     
Sbjct: 719 SFP-----DISTNISWLDLDE------TAIEEFPSNL------RLENLDELILCEMKSEK 761

Query: 647 SGRRYTSSLLEHLEIYSCPSLTCIFSKN-----ELPATLESLEVGNLPPSLKLLLVWGCS 701
              R     L  L     PSLT +F  +     ELP+++++L        L+ L +  C 
Sbjct: 762 LWER--VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH------KLEHLEIENCI 813

Query: 702 KLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQL 740
            LE++   + N  SLE +++SGC  L+T P    N+  L
Sbjct: 814 NLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDL 851

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 49.9 bits (119), Expect = 6e-06
 Identities = 84/331 (25%), Positives = 139/331 (41%), Gaps = 40/331 (12%)

Query: 85  LLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTE-IRTLPESVSKLYNLHSLLLE 143
           L+KLQ      ++G ++ +L D V  L  LR ++L G++ ++ +P+ +S   NL +L L 
Sbjct: 613 LVKLQ------MQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665

Query: 144 DCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRE 203
           DC  L +L + +  L KL  L  S  ++LE +P GI     L++L    +     SG   
Sbjct: 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN----LKSLYRLNL-----SGCSR 716

Query: 204 LKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVL 263
           LK    +     IS L+  +  ++   + L R ENL EL L            +    ++
Sbjct: 717 LKSFPDISTN--ISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLM 773

Query: 264 DMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHL 323
            ML   +    F       ++ P+ +   +  KL  L+ +NC     LP+   L SL+ L
Sbjct: 774 TML-SPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTGINLESLESL 830

Query: 324 TVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELR 383
            + G S+++              FP + T    DL      I       +E+F  L  L 
Sbjct: 831 DLSGCSRLR-------------TFPDIST-NISDLNLSRTGIEE-VPWWIEKFSNLSFLD 875

Query: 384 ILRCSKLKGTFPE--HLPALEMLVIEGCEEL 412
           +  C+ L+        L  LE +    C  L
Sbjct: 876 MNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906

syringae 6; Provisional. Length = 1153

>gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional

 Score = 46.8 bits (111), Expect = 5e-05
 Identities = 37/175 (21%), Positives = 67/175 (38%), Gaps = 26/175 (14%)

Query: 513 AEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSL--SSLREIEIYGCRSLVSFPEVAL 570
            E   + + ++   +E  R S    +      SL +  + L EI I  C +L + P  ++
Sbjct: 34  TETSAEIRSEITPQIEEARASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPG-SI 92

Query: 571 PSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICH 630
           P  L+K+ +  C  +  LPE        S+  LEI G  + +      +P  L  L I  
Sbjct: 93  PEGLEKLTVCHCPEISGLPE--------SVRSLEIKGSATDSI---KNVPNGLTSLSI-- 139

Query: 631 CDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEV 685
                           +  R  + +   L+  S    + I    +LP +L+S+ +
Sbjct: 140 ----------NSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITL 184

Length = 426

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 54/251 (21%), Positives = 90/251 (35%), Gaps = 34/251 (13%)

Query: 598 SSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLE 657
           SS          +L +        ++ RL +    N   L      +  S    + S + 
Sbjct: 22  SSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGIS 81

Query: 658 HLEI-------YSCPSLTCIFSK----------NELPATLESL---------EVGNLPPS 691
            L+           PSL    ++               +L+            +G L  +
Sbjct: 82  SLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSN 141

Query: 692 LKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNL 751
           LK L +   +K+ES+   L N  +L+ +++S   +L  LP  L NL  L  + ++  GN 
Sbjct: 142 LKELDL-SDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLS--GNK 197

Query: 752 VSS--PEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPT 809
           +S   PE  L  A   +    N   +  L   L NLK+L  L +         E  G  +
Sbjct: 198 ISDLPPEIELLSALEELDLSNN--SIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS 255

Query: 810 NLHVLLINGNM 820
           NL  L ++ N 
Sbjct: 256 NLETLDLSNNQ 266

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 0.001
 Identities = 42/186 (22%), Positives = 72/186 (38%), Gaps = 21/186 (11%)

Query: 80  SMLPKLL-KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLH 138
           S LP  +  L +L    L    I+EL  S+ +L+ L  L LS  ++  LPES+  L NL 
Sbjct: 199 SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLE 258

Query: 139 SLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSG 198
           +L L   +++  + + +G+L  L  L  S       +P+    L  L+ L +        
Sbjct: 259 TLDL-SNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNL------- 309

Query: 199 SGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLD----RKENLKELWLRWTLYGSYSR 254
                  LLT     L ++++    +I+   +          E+L  LW         + 
Sbjct: 310 -------LLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNL 362

Query: 255 EAETEM 260
                 
Sbjct: 363 NRYIVK 368

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 90  SLRVFSLRGYRILELPDSV-GDLRYLRYLNLSGTEIRTL-PESVSKLYNLHSLLLEDCD 146
           +L+   L   R+  +PD     L  L+ L+LSG  + ++ PE+ S L +L SL L   +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	962
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.94
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.94
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.94
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.94
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.91
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.87
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.86
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.62
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.61
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.61
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.5
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.5
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.48
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.46
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.11
KOG4341	483	consensus F-box protein containing LRR [General fu	99.11
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.1
KOG4341	483	consensus F-box protein containing LRR [General fu	98.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.98
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.84
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.83
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.77
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.71
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.67
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.63
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.58
PLN03150	623	hypothetical protein; Provisional	98.55
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.54
PRK15386	426	type III secretion protein GogB; Provisional	98.52
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.48
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.43
PRK15386	426	type III secretion protein GogB; Provisional	98.42
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.4
PLN03150	623	hypothetical protein; Provisional	98.33
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.28
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.26
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.25
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.12
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.09
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.07
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.97
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.9
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.82
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.75
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.66
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.64
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.44
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.42
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.37
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.3
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.24
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.2
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.16
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.94
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.61
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.59
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.58
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.55
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.21
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.04
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.83
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.48
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.97
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.94
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.28
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.02
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.01
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.99
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.49
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.9
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.19
smart00370	26	LRR Leucine-rich repeats, outliers.	92.19
smart00370	26	LRR Leucine-rich repeats, outliers.	86.88
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.88
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	80.19
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	80.18

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4e-41  Score=418.76  Aligned_cols=533  Identities=17%  Similarity=0.171  Sum_probs=315.8

Q ss_pred             CceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCc-ccCccc-cCCCcCcEEEcCCCccc-ccChhhhccC
Q 002129           59 QHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRIL-ELPDSV-GDLRYLRYLNLSGTEIR-TLPESVSKLY  135 (962)
Q Consensus        59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~~-~~L~~L~~L~Ls~n~i~-~lp~~i~~L~  135 (962)
                      .+++.|.+.++.      +....++.+..+++|++|+|++|.++ .+|..+ ..+++||+|+|++|.++ .+|.  +.++
T Consensus        69 ~~v~~L~L~~~~------i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~  140 (968)
T PLN00113         69 SRVVSIDLSGKN------ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP  140 (968)
T ss_pred             CcEEEEEecCCC------ccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccC
Confidence            356666655432      12233333446777777777777765 566554 36777777777777665 3443  4566


Q ss_pred             CccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccccceeeecCCCCCCcccccccccccceeE
Q 002129          136 NLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLC  215 (962)
Q Consensus       136 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~  215 (962)
                      +|++|++++|...+.+|..++.+++|++|++++|.+.+.+|..++++++|++|++..+..                    
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l--------------------  200 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL--------------------  200 (968)
T ss_pred             CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC--------------------
Confidence            777777777655556676677777777777777765556666666666666664422110                    


Q ss_pred             EecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCC-CCCccccCCCC
Q 002129          216 ISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGM-KFPTWLGDSSF  294 (962)
Q Consensus       216 ~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l  294 (962)
                                ....+..+..+++|+.|++++                                 +... .+|.++.  .+
T Consensus       201 ----------~~~~p~~l~~l~~L~~L~L~~---------------------------------n~l~~~~p~~l~--~l  235 (968)
T PLN00113        201 ----------VGQIPRELGQMKSLKWIYLGY---------------------------------NNLSGEIPYEIG--GL  235 (968)
T ss_pred             ----------cCcCChHHcCcCCccEEECcC---------------------------------CccCCcCChhHh--cC
Confidence                      000111122333333333332                                 2221 3444443  35


Q ss_pred             CCceEEEEecCCCCCCCC-CCCCCCCCCeEEEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCCccc
Q 002129          295 SKLVTLKFKNCDMCTALP-SVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGV  373 (962)
Q Consensus       295 ~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  373 (962)
                      ++|++|++++|.+.+.+| .++.+++|++|++++|.....+..                                   ..
T Consensus       236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-----------------------------------~l  280 (968)
T PLN00113        236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-----------------------------------SI  280 (968)
T ss_pred             CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch-----------------------------------hH
Confidence            666666666666555544 456666666666665532111100                                   02


Q ss_pred             ccCCCccEEEeccCCcccccCCCCCCCccEEEEcCcccccccCCCCCcceEEEEccCCCceeeccccCCCCCCcceeccC
Q 002129          374 ERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDT  453 (962)
Q Consensus       374 ~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (962)
                      ..+++|++|++++| .+.+.+|.                  .+..+++|+.|++.+|.....                  
T Consensus       281 ~~l~~L~~L~Ls~n-~l~~~~p~------------------~~~~l~~L~~L~l~~n~~~~~------------------  323 (968)
T PLN00113        281 FSLQKLISLDLSDN-SLSGEIPE------------------LVIQLQNLEILHLFSNNFTGK------------------  323 (968)
T ss_pred             hhccCcCEEECcCC-eeccCCCh------------------hHcCCCCCcEEECCCCccCCc------------------
Confidence            33455555555555 33334442                  122233333333333321110                  


Q ss_pred             CccccccCCCCCCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecc
Q 002129          454 SNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLS  533 (962)
Q Consensus       454 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls  533 (962)
                            .......+++|+.|++++|.+.+.   .+..+..+++|+.|+++++.-...++..     +..+ ++|+.|+++
T Consensus       324 ------~~~~~~~l~~L~~L~L~~n~l~~~---~p~~l~~~~~L~~L~Ls~n~l~~~~p~~-----~~~~-~~L~~L~l~  388 (968)
T PLN00113        324 ------IPVALTSLPRLQVLQLWSNKFSGE---IPKNLGKHNNLTVLDLSTNNLTGEIPEG-----LCSS-GNLFKLILF  388 (968)
T ss_pred             ------CChhHhcCCCCCEEECcCCCCcCc---CChHHhCCCCCcEEECCCCeeEeeCChh-----HhCc-CCCCEEECc
Confidence                  000112455666667766665532   2334566788888888885333333321     2222 678888888


Q ss_pred             cccCccccCccCCCCCCccEEEecCCCCccccC-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCC
Q 002129          534 YCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFP-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLT  612 (962)
Q Consensus       534 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~  612 (962)
                      +|.....+|..+..+++|+.|++++|+....+| .+..+++|+.|++++|...+.++...  ..+++|+.|++++|....
T Consensus       389 ~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~  466 (968)
T PLN00113        389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFG  466 (968)
T ss_pred             CCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcCceeee
Confidence            888777788778888888888888876665555 35567788888888887555555444  567888888888876655


Q ss_pred             cccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCc
Q 002129          613 YIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSL  692 (962)
Q Consensus       613 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L  692 (962)
                      .+|.....++|+.|++++|.-...++                                       ..+..+      ++|
T Consensus       467 ~~p~~~~~~~L~~L~ls~n~l~~~~~---------------------------------------~~~~~l------~~L  501 (968)
T PLN00113        467 GLPDSFGSKRLENLDLSRNQFSGAVP---------------------------------------RKLGSL------SEL  501 (968)
T ss_pred             ecCcccccccceEEECcCCccCCccC---------------------------------------hhhhhh------hcc
Confidence            55544334556666666553221111                                       111111      678


Q ss_pred             cEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccc
Q 002129          693 KLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNC  772 (962)
Q Consensus       693 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c  772 (962)
                      ++|++++|...+.+|..+.++++|++|++++|...+.+|..+.++++|++|++++|...+.+|.....+++|+.|++++|
T Consensus       502 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N  581 (968)
T PLN00113        502 MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN  581 (968)
T ss_pred             CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence            88888888888888888888888888888888888888888888888888888888777778877777778888888888


Q ss_pred             cccccCccccCCCcccceeecCCCCCC
Q 002129          773 KRLEALPKGLHNLKSLQELRIGKGVAL  799 (962)
Q Consensus       773 ~~l~~~~~~~~~l~~L~~L~l~~~~~l  799 (962)
                      +..+.+|.. +.+..+....+.+|+.+
T Consensus       582 ~l~~~~p~~-~~~~~~~~~~~~~n~~l  607 (968)
T PLN00113        582 HLHGSLPST-GAFLAINASAVAGNIDL  607 (968)
T ss_pred             cceeeCCCc-chhcccChhhhcCCccc
Confidence            877777753 33444555555666544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.8e-39  Score=401.09  Aligned_cols=514  Identities=18%  Similarity=0.193  Sum_probs=334.5

Q ss_pred             CCcccEEEecCCCCc-ccCccccCCCcCcEEEcCCCccc-ccChhhh-ccCCccEEecCCCcchhccchhhhccCCCcEE
Q 002129           88 LQSLRVFSLRGYRIL-ELPDSVGDLRYLRYLNLSGTEIR-TLPESVS-KLYNLHSLLLEDCDRLEKLCADMGNLVKLHHL  164 (962)
Q Consensus        88 l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~n~i~-~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L  164 (962)
                      ..+++.|+|++|.++ .+|..|..+++|++|+|++|++. .+|..+. .+++|++|++++|+..+.+|.  +.+++|++|
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L  145 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL  145 (968)
T ss_pred             CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence            457899999999887 55778899999999999999987 7887754 899999999999776667774  568899999


Q ss_pred             eccCCcccccccccccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEE
Q 002129          165 KNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWL  244 (962)
Q Consensus       165 ~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l  244 (962)
                      ++++|.+.+.+|..++.+++|++|++..                                                    
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~----------------------------------------------------  173 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGG----------------------------------------------------  173 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECcc----------------------------------------------------
Confidence            9999885556676666666666663321                                                    


Q ss_pred             EeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCC-CCCCccccCCCCCCceEEEEecCCCCCCCC-CCCCCCCCCe
Q 002129          245 RWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGG-MKFPTWLGDSSFSKLVTLKFKNCDMCTALP-SVGQLPSLKH  322 (962)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~-~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~  322 (962)
                                                         |.. ..+|.++.  .+++|++|++++|.+.+.+| .++.+++|++
T Consensus       174 -----------------------------------n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        174 -----------------------------------NVLVGKIPNSLT--NLTSLEFLTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             -----------------------------------CcccccCChhhh--hCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence                                               111 12233332  35555555665555554444 4555566666


Q ss_pred             EEEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCCcccccCCCccEEEeccCCcccccCCCCCCCcc
Q 002129          323 LTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALE  402 (962)
Q Consensus       323 L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~  402 (962)
                      |++++|.....+.                                   ..++.+++|++|++++| .+.+.+|.      
T Consensus       217 L~L~~n~l~~~~p-----------------------------------~~l~~l~~L~~L~L~~n-~l~~~~p~------  254 (968)
T PLN00113        217 IYLGYNNLSGEIP-----------------------------------YEIGGLTSLNHLDLVYN-NLTGPIPS------  254 (968)
T ss_pred             EECcCCccCCcCC-----------------------------------hhHhcCCCCCEEECcCc-eeccccCh------
Confidence            6655543111100                                   00234555555665555 33333332      


Q ss_pred             EEEEcCcccccccCCCCCcceEEEEccCCCceeeccccCCCCCCcceeccCCccccccCCCCCCCCCcceEEecccccce
Q 002129          403 MLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTY  482 (962)
Q Consensus       403 ~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  482 (962)
                                  .+.                                                .+++|++|++++|.+.+
T Consensus       255 ------------~l~------------------------------------------------~l~~L~~L~L~~n~l~~  274 (968)
T PLN00113        255 ------------SLG------------------------------------------------NLKNLQYLFLYQNKLSG  274 (968)
T ss_pred             ------------hHh------------------------------------------------CCCCCCEEECcCCeeec
Confidence                        111                                                12223333333332221


Q ss_pred             eecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccCCCCCCccEEEecCCCCc
Q 002129          483 IWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSL  562 (962)
Q Consensus       483 i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l  562 (962)
                      .                           ++.     .+..+ ++|++|++++|.....+|..+..+++|+.|++++|...
T Consensus       275 ~---------------------------~p~-----~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~  321 (968)
T PLN00113        275 P---------------------------IPP-----SIFSL-QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT  321 (968)
T ss_pred             c---------------------------Cch-----hHhhc-cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence            1                           111     12222 67788888888777788888899999999999998776


Q ss_pred             cccCC-CCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCC-CCCCCCceEEecccCCCcccccc
Q 002129          563 VSFPE-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGV-QLPPSLKRLKICHCDNIRTLTVE  640 (962)
Q Consensus       563 ~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~  640 (962)
                      ..+|. +..+++|+.|++++|...+.+|..+  ..+++|+.|++++|.....+|.. ...++|+.|++.+|.-...++  
T Consensus       322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p--  397 (968)
T PLN00113        322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP--  397 (968)
T ss_pred             CcCChhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC--
Confidence            66663 5668899999999998766777665  67889999999987544444432 223456666665553221111  


Q ss_pred             ccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCchhhhhhccCCCCcceEe
Q 002129          641 EGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKIN  720 (962)
Q Consensus       641 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  720 (962)
                                                           ..+..+      ++|+.|++++|...+.+|..+..+++|+.|+
T Consensus       398 -------------------------------------~~~~~~------~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  434 (968)
T PLN00113        398 -------------------------------------KSLGAC------RSLRRVRLQDNSFSGELPSEFTKLPLVYFLD  434 (968)
T ss_pred             -------------------------------------HHHhCC------CCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence                                                 111111      6788888888888877888888888888888


Q ss_pred             ecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccccCCCcccceeecCCCCCCC
Q 002129          721 ISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALP  800 (962)
Q Consensus       721 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~  800 (962)
                      +++|.+.+.+|..+..+++|+.|++++|...+.+|... ..++|+.|++++|...+.+|..+.++++|++|++++|....
T Consensus       435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  513 (968)
T PLN00113        435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG  513 (968)
T ss_pred             CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence            88888877777777788888888888887666666543 34678888888888777777778888888888888886555


Q ss_pred             CCCCC-CCCCccceEeecCchhhhHHHHhccccccccCccceeecccCCCCCccCCCCCCCCCCCccccCCCccceEeec
Q 002129          801 SLEED-GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIE  879 (962)
Q Consensus       801 ~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  879 (962)
                      .+|.. ..+++|++|++++|......+    ..+..+++|+.|++++|. ....+|...         ..+++|+.|+++
T Consensus       514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~-l~~~~p~~l---------~~l~~L~~l~ls  579 (968)
T PLN00113        514 EIPDELSSCKKLVSLDLSHNQLSGQIP----ASFSEMPVLSQLDLSQNQ-LSGEIPKNL---------GNVESLVQVNIS  579 (968)
T ss_pred             eCChHHcCccCCCEEECCCCcccccCC----hhHhCcccCCEEECCCCc-ccccCChhH---------hcCcccCEEecc
Confidence            55543 456777777777777665544    346667777777777753 233344322         355667777777


Q ss_pred             cCCCCccccc
Q 002129          880 GFPNLERLTS  889 (962)
Q Consensus       880 ~~~~l~~l~~  889 (962)
                      +|+....+|.
T Consensus       580 ~N~l~~~~p~  589 (968)
T PLN00113        580 HNHLHGSLPS  589 (968)
T ss_pred             CCcceeeCCC
Confidence            7655555653

>PLN03210 Resistant to P

Probab=99.94  E-value=3.7e-26  Score=283.34  Aligned_cols=186  Identities=18%  Similarity=0.224  Sum_probs=126.0

Q ss_pred             CcchHHHHHHHHhccce-------EEEecccc--cccccccCCceeEEEEEecCCCccc-ccccccCCCceeEEeecccc
Q 002129            1 MHDLVSDLAQWAAGEMY-------FTMEYTSE--VNKQQRFSRYLRHLSYIRGDYDGVQ-RFGDLYDIQHLRTFLPVILS   70 (962)
Q Consensus         1 mHdlv~d~a~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~r~lsl~~~~~~~~~-~~~~~~~~~~Lr~L~l~~~~   70 (962)
                      |||++||||+++++++.       +.+....-  ......-.+.++++++....+.... ....|..+++|+.|.+....
T Consensus       490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~  569 (1153)
T PLN03210        490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKK  569 (1153)
T ss_pred             hhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccc
Confidence            99999999999997753       22221100  0001112356788777654443221 23456788888888775542


Q ss_pred             CCCCCCCCcccccccccC-CcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchh
Q 002129           71 NSKPGYLAPSMLPKLLKL-QSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLE  149 (962)
Q Consensus        71 ~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~  149 (962)
                      ..........+|+++..+ .+||+|++.++.++.+|..| ...+|++|++++|.+..+|.++..+++|+.|++++|+.++
T Consensus       570 ~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~  648 (1153)
T PLN03210        570 WDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK  648 (1153)
T ss_pred             ccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC
Confidence            101111233456666544 56888888888888888877 5688888888888888888888888888888888877777


Q ss_pred             ccchhhhccCCCcEEeccCCccccccccccccccccccc
Q 002129          150 KLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL  188 (962)
Q Consensus       150 ~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L  188 (962)
                      .+| .++.+++|++|++++|..+..+|..++++++|+.|
T Consensus       649 ~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        649 EIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             cCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            777 47788888888888887667777666666666655

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.94  E-value=3.8e-30  Score=254.98  Aligned_cols=292  Identities=23%  Similarity=0.249  Sum_probs=156.4

Q ss_pred             CcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccCCCC
Q 002129          469 KLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSL  548 (962)
Q Consensus       469 ~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l  548 (962)
                      .|+++++..|++.-+   +......++++..||+++ ++++++|.+.      ++..+|++||+++|. +..+|..++++
T Consensus       229 ~L~Elh~g~N~i~~l---pae~~~~L~~l~vLDLRd-Nklke~Pde~------clLrsL~rLDlSNN~-is~Lp~sLgnl  297 (565)
T KOG0472|consen  229 LLKELHVGENQIEML---PAEHLKHLNSLLVLDLRD-NKLKEVPDEI------CLLRSLERLDLSNND-ISSLPYSLGNL  297 (565)
T ss_pred             HHHHHHhcccHHHhh---HHHHhcccccceeeeccc-cccccCchHH------HHhhhhhhhcccCCc-cccCCcccccc
Confidence            344444444444332   222334667777777777 7888888762      344889999999976 46788889999


Q ss_pred             CCccEEEecCCCCccc---cCCCC---CCCCCcEE----EEcCCCCCCC----Chhhhh--cCCCCCccEEEecCCCCCC
Q 002129          549 SSLREIEIYGCRSLVS---FPEVA---LPSKLKKI----EISSCDALKS----LPEAWM--CDTNSSLEILEISGCDSLT  612 (962)
Q Consensus       549 ~~L~~L~l~~~~~l~~---~~~~~---~~~~L~~L----~l~~~~~l~~----~~~~~~--~~~l~~L~~L~l~~c~~l~  612 (962)
                       .|+.|.+.+|+.-+-   +-..+   .++.|+.=    -++.-..-+.    .+...+  .....+.+.|++++ .+++
T Consensus       298 -hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt  375 (565)
T KOG0472|consen  298 -HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLT  375 (565)
T ss_pred             -eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccc
Confidence             999999999875331   11111   11111110    0010000000    000000  02345677778777 5555


Q ss_pred             cccCCCCC----CCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCC
Q 002129          613 YIAGVQLP----PSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNL  688 (962)
Q Consensus       613 ~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l  688 (962)
                      .+|...+-    .-....+++++ ++..+                                       |..+..+     
T Consensus       376 ~VPdEVfea~~~~~Vt~VnfskN-qL~el---------------------------------------Pk~L~~l-----  410 (565)
T KOG0472|consen  376 LVPDEVFEAAKSEIVTSVNFSKN-QLCEL---------------------------------------PKRLVEL-----  410 (565)
T ss_pred             cCCHHHHHHhhhcceEEEecccc-hHhhh---------------------------------------hhhhHHH-----
Confidence            55542110    01222222222 11111                                       1111111     


Q ss_pred             ccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccc
Q 002129          689 PPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLA  768 (962)
Q Consensus       689 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~  768 (962)
                       ..+...-+..++..+-+|..+..+++|..|++++ +.+.++|..++.+..|+.|+|+.| ....+|........|+.+-
T Consensus       411 -kelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtll  487 (565)
T KOG0472|consen  411 -KELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLL  487 (565)
T ss_pred             -HHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHH
Confidence             2233223333445555666677777777777775 446666777777777777777776 5666666555555566665


Q ss_pred             cccccccccCc-cccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhh
Q 002129          769 IYNCKRLEALP-KGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEI  822 (962)
Q Consensus       769 l~~c~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~  822 (962)
                      .++|+ ++.++ +++.++.+|..|++.+|......|..+.+++|++|.++||++.
T Consensus       488 as~nq-i~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  488 ASNNQ-IGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hcccc-ccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            66566 34443 3477777777777776633333333466667777777766654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.94  E-value=1.7e-29  Score=276.45  Aligned_cols=245  Identities=22%  Similarity=0.265  Sum_probs=165.9

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccC-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFP-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEIL  603 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L  603 (962)
                      .+|+.++++++. ...+|.++..+.+|+.+...+|.. +.+| .....++|+.|.+..|. ++.+|...  ..+.+|++|
T Consensus       241 ~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~l--e~~~sL~tL  315 (1081)
T KOG0618|consen  241 LNLQYLDISHNN-LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFL--EGLKSLRTL  315 (1081)
T ss_pred             ccceeeecchhh-hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcc--cccceeeee
Confidence            556666666644 345556666777777777766433 4444 23445667777776666 66666544  556677777


Q ss_pred             EecCCCCCCcccCCCCC---CCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccc
Q 002129          604 EISGCDSLTYIAGVQLP---PSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATL  680 (962)
Q Consensus       604 ~l~~c~~l~~~~~~~~~---~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l  680 (962)
                      ++.. +++..+|...+.   .+|+.+..+.+ .+...+.                               +.++..    
T Consensus       316 dL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~-------------------------------~~e~~~----  358 (1081)
T KOG0618|consen  316 DLQS-NNLPSLPDNFLAVLNASLNTLNVSSN-KLSTLPS-------------------------------YEENNH----  358 (1081)
T ss_pred             eehh-ccccccchHHHhhhhHHHHHHhhhhc-ccccccc-------------------------------ccchhh----
Confidence            7776 445555442110   11222221111 1111110                               111111    


Q ss_pred             cccccCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCC
Q 002129          681 ESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLP  760 (962)
Q Consensus       681 ~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~  760 (962)
                               +.|+.|++.+|...+...+.+.+.++|+.|+|++|.+..-....+.+++.|++|++++| +++.+|.....
T Consensus       359 ---------~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~  428 (1081)
T KOG0618|consen  359 ---------AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVAN  428 (1081)
T ss_pred             ---------HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHh
Confidence                     68999999999999999899999999999999997754444456789999999999999 89999998888


Q ss_pred             cccccccccccccccccCccccCCCcccceeecCCCCCCCC-CCCCCCCCccceEeecCchhhh
Q 002129          761 CAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPS-LEEDGLPTNLHVLLINGNMEIW  823 (962)
Q Consensus       761 ~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~L~~L~l~~~~~~~  823 (962)
                      ++.|++|...+|. +..+| .+..+++|+.+|++.|..-.. +++....++|++|+++||....
T Consensus       429 ~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  429 LGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV  490 (1081)
T ss_pred             hhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccc
Confidence            9999999999988 67788 888999999999998853222 3332223899999999998543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.94  E-value=3.1e-30  Score=255.63  Aligned_cols=262  Identities=24%  Similarity=0.266  Sum_probs=142.0

Q ss_pred             eeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCcCc
Q 002129           36 LRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLR  115 (962)
Q Consensus        36 ~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~  115 (962)
                      ...+.+++|+....  .+++.++..+.+|.+.++.       ..+.|+.+..+..+..|+.++|++.++|+.++.+..|+
T Consensus        47 l~~lils~N~l~~l--~~dl~nL~~l~vl~~~~n~-------l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~  117 (565)
T KOG0472|consen   47 LQKLILSHNDLEVL--REDLKNLACLTVLNVHDNK-------LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLV  117 (565)
T ss_pred             hhhhhhccCchhhc--cHhhhcccceeEEEeccch-------hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhh
Confidence            34455555554432  2345556666666655543       45566666666666666666666666666666666666


Q ss_pred             EEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccccceeeecC
Q 002129          116 YLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGK  195 (962)
Q Consensus       116 ~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~~  195 (962)
                      .|+.++|.+.++|++|+.+..|+.|+..+ +.+.++|++++.+.+|..|++.+|+ ++.+|...-+++.|++|+...+.-
T Consensus       118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L  195 (565)
T KOG0472|consen  118 KLDCSSNELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLL  195 (565)
T ss_pred             hhhccccceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhh
Confidence            66666666666666666666666666665 4466666666666666666666666 555555544466666664322110


Q ss_pred             CCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceE
Q 002129          196 DSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQF  275 (962)
Q Consensus       196 ~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L  275 (962)
                        +..+.+++.+..|. .++...     +.....+ .|.++..|+++++..|.         .++-..+....++.+..|
T Consensus       196 --~tlP~~lg~l~~L~-~LyL~~-----Nki~~lP-ef~gcs~L~Elh~g~N~---------i~~lpae~~~~L~~l~vL  257 (565)
T KOG0472|consen  196 --ETLPPELGGLESLE-LLYLRR-----NKIRFLP-EFPGCSLLKELHVGENQ---------IEMLPAEHLKHLNSLLVL  257 (565)
T ss_pred             --hcCChhhcchhhhH-HHHhhh-----cccccCC-CCCccHHHHHHHhcccH---------HHhhHHHHhcccccceee
Confidence              12222222222221 000000     0000011 24445555555554443         112222334455666666


Q ss_pred             EEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCC
Q 002129          276 CIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMS  329 (962)
Q Consensus       276 ~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~  329 (962)
                      +++.|+..++|..+.  .+++|++|++++|.+..-.+.++++ +|+.|.+.||+
T Consensus       258 DLRdNklke~Pde~c--lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  258 DLRDNKLKEVPDEIC--LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             eccccccccCchHHH--HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence            666666666666664  3566667777776655555566666 66666666665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.93  E-value=3e-26  Score=237.87  Aligned_cols=58  Identities=24%  Similarity=0.268  Sum_probs=32.5

Q ss_pred             CcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCC-CCCCCCCCCeEEEcCCC
Q 002129          271 NLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALP-SVGQLPSLKHLTVRGMS  329 (962)
Q Consensus       271 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~  329 (962)
                      ++++|++.+|.++.+-..-++ ++.+|..|.|+.|.+....+ .|..+|+|+.|+|..|.
T Consensus       174 ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             CceEEeecccccccccccccc-ccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence            344444444444444333332 45667777777776554433 56667777777776653

>PLN03210 Resistant to P

Probab=99.92  E-value=3.8e-24  Score=265.51  Aligned_cols=293  Identities=24%  Similarity=0.382  Sum_probs=138.8

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE  604 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  604 (962)
                      .+|+.|++++|. +..+|.++..+++|+.|++++|..++.+|.+..+++|++|++++|..+..+|..+  ..+++|+.|+
T Consensus       611 ~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si--~~L~~L~~L~  687 (1153)
T PLN03210        611 ENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI--QYLNKLEDLD  687 (1153)
T ss_pred             cCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhh--hccCCCCEEe
Confidence            445555555543 3344444445555555555555445555544445555555555555454444443  4445555555


Q ss_pred             ecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccc
Q 002129          605 ISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE  684 (962)
Q Consensus       605 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~  684 (962)
                      +++|+.++.+|....+++|+.|.+++|..++.+|.                                             
T Consensus       688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~---------------------------------------------  722 (1153)
T PLN03210        688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD---------------------------------------------  722 (1153)
T ss_pred             CCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc---------------------------------------------
Confidence            55555554444433334444444444433332220                                             


Q ss_pred             cCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccc------c-CccccCCCCccEEEcccCCCcccCCCC
Q 002129          685 VGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQT------L-PSGLHNLCQLQEISIASCGNLVSSPEG  757 (962)
Q Consensus       685 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------~-~~~l~~l~~L~~L~L~~~~~l~~~~~~  757 (962)
                         .+.+|++|++++|.+ ..+|..+ .+++|++|.+.++.....      + +......++|++|++++|+.+..+|..
T Consensus       723 ---~~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s  797 (1153)
T PLN03210        723 ---ISTNISWLDLDETAI-EEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS  797 (1153)
T ss_pred             ---ccCCcCeeecCCCcc-ccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh
Confidence               014566666666553 3344332 355556555554332110      0 001111234444444444444444444


Q ss_pred             CCCcccccccccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccC
Q 002129          758 GLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFS  837 (962)
Q Consensus       758 ~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  837 (962)
                      +..+++|+.|++++|..++.+|..+ ++++|+.|++++|..+..+|.  .                            .+
T Consensus       798 i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~----------------------------~~  846 (1153)
T PLN03210        798 IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--I----------------------------ST  846 (1153)
T ss_pred             hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--c----------------------------cc
Confidence            4444444444444444444444433 344444444444444443332  1                            23


Q ss_pred             ccceeecccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcccccccccCCCcCeEeccCCCCCccCC
Q 002129          838 SLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFP  912 (962)
Q Consensus       838 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~  912 (962)
                      +|+.|+++++  ..+.+|...         ..+++|+.|++++|++++.+|..+..+++|+.+++.+|++|+.++
T Consensus       847 nL~~L~Ls~n--~i~~iP~si---------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        847 NISDLNLSRT--GIEEVPWWI---------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             ccCEeECCCC--CCccChHHH---------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence            4555555553  233333322         245566666666666666666666666666666666666665543

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.91  E-value=1.3e-25  Score=233.17  Aligned_cols=365  Identities=18%  Similarity=0.160  Sum_probs=229.8

Q ss_pred             ceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccC-hhhhccCCc
Q 002129           60 HLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLP-ESVSKLYNL  137 (962)
Q Consensus        60 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp-~~i~~L~~L  137 (962)
                      .-++|.+..+.       ...+-..+| ++++|+.+++.+|.++.+|...+...||+.|+|.+|.|+++. +++..+..|
T Consensus        79 ~t~~LdlsnNk-------l~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al  151 (873)
T KOG4194|consen   79 QTQTLDLSNNK-------LSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL  151 (873)
T ss_pred             ceeeeeccccc-------cccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence            44566665543       333444445 777888888877777777777677777888888888777774 447777778


Q ss_pred             cEEecCCCcchhccch-hhhccCCCcEEeccCCccccccccc-ccccccccccceeeecCCCCCCcccccccccccceeE
Q 002129          138 HSLLLEDCDRLEKLCA-DMGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLC  215 (962)
Q Consensus       138 ~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~  215 (962)
                      |+|||+. +.+.++|. .|..=.++++|+|++|. ++.+-.+ |..+.+|.+|.+..+.                     
T Consensus       152 rslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr---------------------  208 (873)
T KOG4194|consen  152 RSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR---------------------  208 (873)
T ss_pred             hhhhhhh-chhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCc---------------------
Confidence            8888877 45666664 36666777788888777 6666544 6666666666443221                     


Q ss_pred             EecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCC
Q 002129          216 ISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFS  295 (962)
Q Consensus       216 ~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~  295 (962)
                               ........|.++++|+.|++..|.+.         +...-.|+.++.|+.|.+..|++..+.+..+- .+.
T Consensus       209 ---------ittLp~r~Fk~L~~L~~LdLnrN~ir---------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy-~l~  269 (873)
T KOG4194|consen  209 ---------ITTLPQRSFKRLPKLESLDLNRNRIR---------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY-GLE  269 (873)
T ss_pred             ---------ccccCHHHhhhcchhhhhhcccccee---------eehhhhhcCchhhhhhhhhhcCcccccCccee-eec
Confidence                     11112233666777777877766521         11123456677777777777777766555443 467


Q ss_pred             CceEEEEecCCCCCCCC-CCCCCCCCCeEEEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCCcccc
Q 002129          296 KLVTLKFKNCDMCTALP-SVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVE  374 (962)
Q Consensus       296 ~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  374 (962)
                      ++++|+|+.|.+...-. ++-++..|+.|++++|. ++.+.                         ...         -.
T Consensus       270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih-------------------------~d~---------Ws  314 (873)
T KOG4194|consen  270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIH-------------------------IDS---------WS  314 (873)
T ss_pred             ccceeecccchhhhhhcccccccchhhhhccchhh-hheee-------------------------cch---------hh
Confidence            77777777776544322 56667777777776663 11111                         111         13


Q ss_pred             cCCCccEEEeccCCcccccCCCCCCCccEEEEcCcccccccCCCCCcceEEEEccCCCceeeccccCCCCCCcceeccCC
Q 002129          375 RFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTS  454 (962)
Q Consensus       375 ~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (962)
                      ..++|++|+++++ .++ .+++.                 .+..+..|+.|.+++|..-.                    
T Consensus       315 ftqkL~~LdLs~N-~i~-~l~~~-----------------sf~~L~~Le~LnLs~Nsi~~--------------------  355 (873)
T KOG4194|consen  315 FTQKLKELDLSSN-RIT-RLDEG-----------------SFRVLSQLEELNLSHNSIDH--------------------  355 (873)
T ss_pred             hcccceeEecccc-ccc-cCChh-----------------HHHHHHHhhhhcccccchHH--------------------
Confidence            4677888888777 665 55531                 33334444555555444221                    


Q ss_pred             ccccccCCCCCCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeeccc
Q 002129          455 NQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSY  534 (962)
Q Consensus       455 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~  534 (962)
                          +....+..+.+|++|+|++|.++.........+.++++|+.|++.+ ++++.|+..    +|..+ +.|++|+|.+
T Consensus       356 ----l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~kr----Afsgl-~~LE~LdL~~  425 (873)
T KOG4194|consen  356 ----LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKR----AFSGL-EALEHLDLGD  425 (873)
T ss_pred             ----HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchh----hhccC-cccceecCCC
Confidence                2223445677888888888888776666666677788888888888 777777765    45555 7788888888


Q ss_pred             ccCccccCccCCCCCCccEEEecC
Q 002129          535 CEGLVKLPQSSLSLSSLREIEIYG  558 (962)
Q Consensus       535 ~~~l~~~~~~~~~l~~L~~L~l~~  558 (962)
                      |.....-|.+|..+ .|++|.+..
T Consensus       426 NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  426 NAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             Ccceeecccccccc-hhhhhhhcc
Confidence            77766666677666 777777654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.90  E-value=5e-26  Score=249.47  Aligned_cols=264  Identities=23%  Similarity=0.279  Sum_probs=150.4

Q ss_pred             CCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccCC
Q 002129          467 LPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSL  546 (962)
Q Consensus       467 ~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~  546 (962)
                      ..+|++++++.|+++.+    +.|...+.+|+.+++.+ +.+..++...     ... .+|+.|.+.+|. ++.+|....
T Consensus       240 p~nl~~~dis~n~l~~l----p~wi~~~~nle~l~~n~-N~l~~lp~ri-----~~~-~~L~~l~~~~ne-l~yip~~le  307 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSNL----PEWIGACANLEALNANH-NRLVALPLRI-----SRI-TSLVSLSAAYNE-LEYIPPFLE  307 (1081)
T ss_pred             cccceeeecchhhhhcc----hHHHHhcccceEecccc-hhHHhhHHHH-----hhh-hhHHHHHhhhhh-hhhCCCccc
Confidence            35778888888877765    26678888899888887 7776666542     222 778888888876 567777788


Q ss_pred             CCCCccEEEecCCCCccccCCCC--C-CCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCc--ccCCCCCC
Q 002129          547 SLSSLREIEIYGCRSLVSFPEVA--L-PSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTY--IAGVQLPP  621 (962)
Q Consensus       547 ~l~~L~~L~l~~~~~l~~~~~~~--~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~  621 (962)
                      .+.+|++|+|.. +.+..+|...  . ..+|+.|..+.+. +...|.. -...++.|+.|++.+| .+++  +|......
T Consensus       308 ~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~-l~~lp~~-~e~~~~~Lq~LylanN-~Ltd~c~p~l~~~~  383 (1081)
T KOG0618|consen  308 GLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNK-LSTLPSY-EENNHAALQELYLANN-HLTDSCFPVLVNFK  383 (1081)
T ss_pred             ccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhcc-ccccccc-cchhhHHHHHHHHhcC-cccccchhhhcccc
Confidence            899999999998 4566666521  1 2336677777665 4444421 1145567777777774 3332  33334445


Q ss_pred             CCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCC
Q 002129          622 SLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCS  701 (962)
Q Consensus       622 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~  701 (962)
                      +|+.|+++++. +..+|..                                      .+..     + ..|++|++++|.
T Consensus       384 hLKVLhLsyNr-L~~fpas--------------------------------------~~~k-----l-e~LeeL~LSGNk  418 (1081)
T KOG0618|consen  384 HLKVLHLSYNR-LNSFPAS--------------------------------------KLRK-----L-EELEELNLSGNK  418 (1081)
T ss_pred             ceeeeeecccc-cccCCHH--------------------------------------HHhc-----h-HHhHHHhcccch
Confidence            56666665542 2222210                                      0011     1 456666666654


Q ss_pred             CchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccc
Q 002129          702 KLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKG  781 (962)
Q Consensus       702 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  781 (962)
                       +..+|..+..+..|++|...+|.+. ..| .+..+++|+.+|++.|..-...-....+.|+|++||++||..+..--..
T Consensus       419 -L~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~  495 (1081)
T KOG0618|consen  419 -LTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKT  495 (1081)
T ss_pred             -hhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhh
Confidence             4445566666666666666654432 334 4556666666666655322221122233356666666666543222223


Q ss_pred             cCCCcccceeecC
Q 002129          782 LHNLKSLQELRIG  794 (962)
Q Consensus       782 ~~~l~~L~~L~l~  794 (962)
                      +..+..+...++.
T Consensus       496 l~~l~~l~~~~i~  508 (1081)
T KOG0618|consen  496 LKVLKSLSQMDIT  508 (1081)
T ss_pred             hHHhhhhhheecc
Confidence            3334444444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.87  E-value=4e-24  Score=223.42  Aligned_cols=246  Identities=18%  Similarity=0.204  Sum_probs=133.3

Q ss_pred             CCceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCC
Q 002129           33 SRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLR  112 (962)
Q Consensus        33 ~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~  112 (962)
                      -+-||.+++++|++.+.--+.+...+++++.|.+.+..       ...+|.++..+.+|+.|.+.+|++..+...+..|+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-------L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp   78 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-------LEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLP   78 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-------hhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccch
Confidence            34567777777776544334455566677777665432       34556666666666666666666665555566666


Q ss_pred             cCcEEEcCCCccc--ccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCccccccccc-ccccccccccc
Q 002129          113 YLRYLNLSGTEIR--TLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTLC  189 (962)
Q Consensus       113 ~L~~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~  189 (962)
                      .||.+++..|++.  .+|..|.+|..|.+|||++ +.+.+.|.++..-+++-.|+|++|+ +..+|.. +-+|+.|-.|+
T Consensus        79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLD  156 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLD  156 (1255)
T ss_pred             hhHHHhhhccccccCCCCchhcccccceeeecch-hhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhc
Confidence            6666666666554  4566666666666666666 4566666666666666666666665 5666654 45555555554


Q ss_pred             eeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCC
Q 002129          190 SFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPH  269 (962)
Q Consensus       190 ~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~  269 (962)
                      ++.+.                               .+..+.....+..|+.|.+++|.         .....+..+..+
T Consensus       157 LS~Nr-------------------------------Le~LPPQ~RRL~~LqtL~Ls~NP---------L~hfQLrQLPsm  196 (1255)
T KOG0444|consen  157 LSNNR-------------------------------LEMLPPQIRRLSMLQTLKLSNNP---------LNHFQLRQLPSM  196 (1255)
T ss_pred             cccch-------------------------------hhhcCHHHHHHhhhhhhhcCCCh---------hhHHHHhcCccc
Confidence            33211                               11122223334444455554443         111122223333


Q ss_pred             CCcceEEEeccC--CCCCCccccCCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCC
Q 002129          270 TNLEQFCIKGYG--GMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMS  329 (962)
Q Consensus       270 ~~L~~L~l~~~~--~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~  329 (962)
                      +.|+.|.+++..  ...+|..+.  .+.+|..++++.|.+...+..+-.+++|+.|+|++|.
T Consensus       197 tsL~vLhms~TqRTl~N~Ptsld--~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~  256 (1255)
T KOG0444|consen  197 TSLSVLHMSNTQRTLDNIPTSLD--DLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK  256 (1255)
T ss_pred             hhhhhhhcccccchhhcCCCchh--hhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc
Confidence            444455555443  224555554  3666666666666543333345566666666666653

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.86  E-value=7.1e-24  Score=221.59  Aligned_cols=341  Identities=19%  Similarity=0.272  Sum_probs=181.8

Q ss_pred             CCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCcc-ccCcc
Q 002129          466 QLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLV-KLPQS  544 (962)
Q Consensus       466 ~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~-~~~~~  544 (962)
                      .+++++.|.+....+..+.    .-++.+.+|++|.+.+ +++.++..+     +..+ |.|+.+.+++|+.-. .+|..
T Consensus        30 qMt~~~WLkLnrt~L~~vP----eEL~~lqkLEHLs~~H-N~L~~vhGE-----Ls~L-p~LRsv~~R~N~LKnsGiP~d   98 (1255)
T KOG0444|consen   30 QMTQMTWLKLNRTKLEQVP----EELSRLQKLEHLSMAH-NQLISVHGE-----LSDL-PRLRSVIVRDNNLKNSGIPTD   98 (1255)
T ss_pred             HhhheeEEEechhhhhhCh----HHHHHHhhhhhhhhhh-hhhHhhhhh-----hccc-hhhHHHhhhccccccCCCCch
Confidence            3556666666655444332    2245566666666666 555544332     3333 666666666655433 46666


Q ss_pred             CCCCCCccEEEecCCCCccccC-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCC-CCCCC
Q 002129          545 SLSLSSLREIEIYGCRSLVSFP-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGV-QLPPS  622 (962)
Q Consensus       545 ~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~  622 (962)
                      +..+.-|..|+|++ +.++.+| .+....++-.|++++|. ++.||...+ .++..|-.|++++ +.+..+|+. ..+..
T Consensus        99 iF~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf-inLtDLLfLDLS~-NrLe~LPPQ~RRL~~  174 (1255)
T KOG0444|consen   99 IFRLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLF-INLTDLLFLDLSN-NRLEMLPPQIRRLSM  174 (1255)
T ss_pred             hcccccceeeecch-hhhhhcchhhhhhcCcEEEEcccCc-cccCCchHH-HhhHhHhhhcccc-chhhhcCHHHHHHhh
Confidence            66667777777776 3455555 34555666677777666 666666655 5566666677776 455555543 33345


Q ss_pred             CceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCC
Q 002129          623 LKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSK  702 (962)
Q Consensus       623 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~  702 (962)
                      |++|.+++++-                       ....+...|.+                      ++|+.|++++...
T Consensus       175 LqtL~Ls~NPL-----------------------~hfQLrQLPsm----------------------tsL~vLhms~TqR  209 (1255)
T KOG0444|consen  175 LQTLKLSNNPL-----------------------NHFQLRQLPSM----------------------TSLSVLHMSNTQR  209 (1255)
T ss_pred             hhhhhcCCChh-----------------------hHHHHhcCccc----------------------hhhhhhhcccccc
Confidence            55565555541                       11111111111                      4555555555433


Q ss_pred             c-hhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccc
Q 002129          703 L-ESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKG  781 (962)
Q Consensus       703 ~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  781 (962)
                      + ..+|.++..+.+|..+++|.|+ +..+|+.+.++++|+.|+|++| .++.+..+...+.+|++|+++.|+ +..+|..
T Consensus       210 Tl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~a  286 (1255)
T KOG0444|consen  210 TLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPDA  286 (1255)
T ss_pred             hhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccch-hccchHH
Confidence            2 3355666666666666666543 3345566666666666666666 555555444445566666666665 5566666


Q ss_pred             cCCCcccceeecCCCCC-CCCCCCC-CCCCccceEeecCchhhhHHHHhccccccccCccceeecccCCCCCccCCCCCC
Q 002129          782 LHNLKSLQELRIGKGVA-LPSLEED-GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKAD  859 (962)
Q Consensus       782 ~~~l~~L~~L~l~~~~~-l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  859 (962)
                      +..++.|+.|.+.+|.. ...+|.+ +.+..|+++..++|..... +    ..+..++.|+.|.++.|  .+..+|+.+ 
T Consensus       287 vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV-P----EglcRC~kL~kL~L~~N--rLiTLPeaI-  358 (1255)
T KOG0444|consen  287 VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV-P----EGLCRCVKLQKLKLDHN--RLITLPEAI-  358 (1255)
T ss_pred             HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccC-c----hhhhhhHHHHHhccccc--ceeechhhh-
Confidence            66666666666665531 1223332 3344444444444433221 1    23445555555555553  344444433 


Q ss_pred             CCCCCccccCCCccceEeeccCCCCc
Q 002129          860 DKGSGTVLPLPASLTYLRIEGFPNLE  885 (962)
Q Consensus       860 ~~~~~~~~~~~~~L~~L~l~~~~~l~  885 (962)
                              ..++-|+.|++.++|++.
T Consensus       359 --------HlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  359 --------HLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             --------hhcCCcceeeccCCcCcc
Confidence                    355555555555555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.86  E-value=5.1e-22  Score=232.38  Aligned_cols=187  Identities=28%  Similarity=0.352  Sum_probs=143.7

Q ss_pred             CcchHHHHHHHHhc-----cceEEEecc--cccccccccCCceeEEEEEecCCCcccccccccCCCceeEEeeccccCCC
Q 002129            1 MHDLVSDLAQWAAG-----EMYFTMEYT--SEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSK   73 (962)
Q Consensus         1 mHdlv~d~a~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~   73 (962)
                      |||||||||.|+|+     +|.+++..+  .........+..+||+++.++.+...   ..-..+++|++|.+.++..  
T Consensus       483 mHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~---~~~~~~~~L~tLll~~n~~--  557 (889)
T KOG4658|consen  483 MHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHI---AGSSENPKLRTLLLQRNSD--  557 (889)
T ss_pred             eeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhc---cCCCCCCccceEEEeecch--
Confidence            99999999999999     666665542  11112233457899999999876543   3445677999999988641  


Q ss_pred             CCCCCcccccccc-cCCcccEEEecCCC-CcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhcc
Q 002129           74 PGYLAPSMLPKLL-KLQSLRVFSLRGYR-ILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKL  151 (962)
Q Consensus        74 ~~~~~~~~~~~~~-~l~~L~~L~L~~~~-i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~l  151 (962)
                         -...++.++| .++.||||||++|. +.++|++++.|.+||||+|+++.|..+|.++++|+.|.+|++.++.....+
T Consensus       558 ---~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~  634 (889)
T KOG4658|consen  558 ---WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI  634 (889)
T ss_pred             ---hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc
Confidence               1456677788 89999999999876 789999999999999999999999999999999999999999997777777


Q ss_pred             chhhhccCCCcEEeccCCcccccccccccccccccccceeeecCC
Q 002129          152 CADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKD  196 (962)
Q Consensus       152 p~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~  196 (962)
                      |..+..|.+||+|.+.... ...-...++.+.+|++|..+.....
T Consensus       635 ~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  635 PGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITIS  678 (889)
T ss_pred             cchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecc
Confidence            7667789999999998764 2222223555666666655444333

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.62  E-value=2.6e-17  Score=164.30  Aligned_cols=116  Identities=26%  Similarity=0.284  Sum_probs=98.7

Q ss_pred             Ccccccccc-cCCcccEEEecCCCCccc-CccccCCCcCcEEEcCC-CcccccChh-hhccCCccEEecCCCcchhccch
Q 002129           78 APSMLPKLL-KLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSG-TEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCA  153 (962)
Q Consensus        78 ~~~~~~~~~-~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~-n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~  153 (962)
                      ...+|+..| .+++||.|||++|+|+.| |++|.+|..|-.|-+-+ |+|+++|+. |++|..|+.|.+.-|...-...+
T Consensus        79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~  158 (498)
T KOG4237|consen   79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQD  158 (498)
T ss_pred             cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHH
Confidence            678899999 999999999999999988 88999999888877776 899999976 99999999999988544444456


Q ss_pred             hhhccCCCcEEeccCCccccccccc-ccccccccccceeeec
Q 002129          154 DMGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTLCSFVVG  194 (962)
Q Consensus       154 ~i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~~~~~~  194 (962)
                      .+..|.+|..|.+.+|. ++.++.+ +..+.+++++.+-...
T Consensus       159 al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  159 ALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             HHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence            78999999999999998 8888885 8999999988664443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.61  E-value=5.7e-15  Score=169.49  Aligned_cols=214  Identities=30%  Similarity=0.372  Sum_probs=121.6

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE  604 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  604 (962)
                      ..-..|+++++. ++.+|..+.  ++|+.|++.+| .++.+|.  .+++|++|++++|. ++.+|.     ..++|++|+
T Consensus       201 ~~~~~LdLs~~~-LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~-----lp~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCC-CCcCCcchh--cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCc-cCcccC-----cccccceee
Confidence            446678888874 456776554  47888888874 5666764  36778888888875 666663     236777777


Q ss_pred             ecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccc
Q 002129          605 ISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE  684 (962)
Q Consensus       605 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~  684 (962)
                      +++| .++.++.  .+.+|+.|++.+|. ++.+|                                              
T Consensus       269 Ls~N-~L~~Lp~--lp~~L~~L~Ls~N~-Lt~LP----------------------------------------------  298 (788)
T PRK15387        269 IFSN-PLTHLPA--LPSGLCKLWIFGNQ-LTSLP----------------------------------------------  298 (788)
T ss_pred             ccCC-chhhhhh--chhhcCEEECcCCc-ccccc----------------------------------------------
Confidence            7774 3555543  34456666655542 22222                                              


Q ss_pred             cCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccc
Q 002129          685 VGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKL  764 (962)
Q Consensus       685 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L  764 (962)
                        ..|++|+.|++++|.+.+ +|..   ..+|+.|++++|.+. .+|..   ..+|+.|++++| .+..+|..   .++|
T Consensus       299 --~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N-~Ls~LP~l---p~~L  364 (788)
T PRK15387        299 --VLPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDN-QLASLPTL---PSEL  364 (788)
T ss_pred             --ccccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---ccccceEecCCC-ccCCCCCC---Cccc
Confidence              011567777777775443 3321   234666666665543 34431   235677777766 55556542   1356


Q ss_pred             cccccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchh
Q 002129          765 AMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNME  821 (962)
Q Consensus       765 ~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~  821 (962)
                      +.|++++|. +..+|..   ..+|+.|++++| .+..+|.  .+++|+.|++++|.+
T Consensus       365 ~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N-~Lt~LP~--l~s~L~~LdLS~N~L  414 (788)
T PRK15387        365 YKLWAYNNR-LTSLPAL---PSGLKELIVSGN-RLTSLPV--LPSELKELMVSGNRL  414 (788)
T ss_pred             ceehhhccc-cccCccc---ccccceEEecCC-cccCCCC--cccCCCEEEccCCcC
Confidence            666666665 3345532   235666666665 3444443  234455555555543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.61  E-value=7.5e-15  Score=168.52  Aligned_cols=78  Identities=19%  Similarity=0.233  Sum_probs=54.0

Q ss_pred             CcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccC
Q 002129           89 QSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSN  168 (962)
Q Consensus        89 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~  168 (962)
                      ..-.+|+|++++++.+|..+..  +|+.|++++|+++.+|..   +++|++|++++| .+..+|..   ..+|+.|++++
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~~--~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS  271 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchhc--CCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence            4466788888888888877653  788888888888887752   467777777774 56666643   35667777777


Q ss_pred             Cccccccc
Q 002129          169 TKSLEEMP  176 (962)
Q Consensus       169 n~~~~~lp  176 (962)
                      |. +..+|
T Consensus       272 N~-L~~Lp  278 (788)
T PRK15387        272 NP-LTHLP  278 (788)
T ss_pred             Cc-hhhhh
Confidence            76 44444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.61  E-value=3.6e-17  Score=163.38  Aligned_cols=98  Identities=24%  Similarity=0.343  Sum_probs=65.5

Q ss_pred             cEEEecCCCCcccC-ccccCCCcCcEEEcCCCccccc-ChhhhccCCccEEecCCCcchhccchh-hhccCCCcEEeccC
Q 002129           92 RVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTL-PESVSKLYNLHSLLLEDCDRLEKLCAD-MGNLVKLHHLKNSN  168 (962)
Q Consensus        92 ~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~  168 (962)
                      ..++|..|+|+.|| .+|+.+++||.||||+|.|+.| |..|..|..|..|-+.+++.++.+|.. |++|..|+.|.+.-
T Consensus        70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa  149 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA  149 (498)
T ss_pred             eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence            45667777777775 4577777777777777777766 556777777777766666677777754 67777777777776


Q ss_pred             Cccccccccc-ccccccccccce
Q 002129          169 TKSLEEMPVG-IGRLTCLQTLCS  190 (962)
Q Consensus       169 n~~~~~lp~~-~~~L~~L~~L~~  190 (962)
                      |+ +.-++.+ +..|++|..|.+
T Consensus       150 n~-i~Cir~~al~dL~~l~lLsl  171 (498)
T KOG4237|consen  150 NH-INCIRQDALRDLPSLSLLSL  171 (498)
T ss_pred             hh-hcchhHHHHHHhhhcchhcc
Confidence            66 4444433 555666555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=5.4e-17  Score=142.79  Aligned_cols=128  Identities=25%  Similarity=0.362  Sum_probs=75.7

Q ss_pred             ccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhh
Q 002129           53 GDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVS  132 (962)
Q Consensus        53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~  132 (962)
                      +.+..+++...|.+..+.       ...+||.+..+++|++|++.+|+|+++|.+++.++.||.|+++-|++..+|..|+
T Consensus        27 ~gLf~~s~ITrLtLSHNK-------l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg   99 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNK-------LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG   99 (264)
T ss_pred             ccccchhhhhhhhcccCc-------eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence            333444455445444332       4455666666666666666666666666666666666666666666666666666


Q ss_pred             ccCCccEEecCCCcch-hccchhhhccCCCcEEeccCCccccccccccccccccccc
Q 002129          133 KLYNLHSLLLEDCDRL-EKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL  188 (962)
Q Consensus       133 ~L~~L~~L~L~~~~~~-~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L  188 (962)
                      .++.|++||+++|+.. ..+|..|..|+.|+.|++++|. ...+|.++++|++||.|
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil  155 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQIL  155 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEE
Confidence            6666666666664433 3456566666666666666665 55666666666666655

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.50  E-value=4.6e-14  Score=165.99  Aligned_cols=133  Identities=26%  Similarity=0.298  Sum_probs=105.8

Q ss_pred             ccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCC--CcccCcc-ccCCCcCcEEEcCCC-cccccC
Q 002129           53 GDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYR--ILELPDS-VGDLRYLRYLNLSGT-EIRTLP  128 (962)
Q Consensus        53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--i~~lp~~-~~~L~~L~~L~Ls~n-~i~~lp  128 (962)
                      +...+....|...+..+.        ....+.-...+.|++|-+.+|.  +..++.. |..++.|++|||++| .+.++|
T Consensus       517 ~~~~~~~~~rr~s~~~~~--------~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP  588 (889)
T KOG4658|consen  517 PQVKSWNSVRRMSLMNNK--------IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP  588 (889)
T ss_pred             ccccchhheeEEEEeccc--------hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence            344556677887776653        1222222345589999999997  6677654 788999999999988 678999


Q ss_pred             hhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccccceeeec
Q 002129          129 ESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVG  194 (962)
Q Consensus       129 ~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~  194 (962)
                      ++|+.|.+||+|++++ +.+..+|.++++|++|.+|++..+.....+|.....|.+||+|.++...
T Consensus       589 ~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  589 SSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            9999999999999999 7899999999999999999999988666666667779999999776644

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.50  E-value=6.9e-16  Score=135.89  Aligned_cols=146  Identities=23%  Similarity=0.337  Sum_probs=132.7

Q ss_pred             CceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCc
Q 002129           34 RYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRY  113 (962)
Q Consensus        34 ~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~  113 (962)
                      ..++++.++.|.+..+  ++.+.++.+|++|.++.+.       ..++|.++..+++||.|+++-|++..+|..|+.++.
T Consensus        33 s~ITrLtLSHNKl~~v--ppnia~l~nlevln~~nnq-------ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~  103 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVV--PPNIAELKNLEVLNLSNNQ-------IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA  103 (264)
T ss_pred             hhhhhhhcccCceeec--CCcHHHhhhhhhhhcccch-------hhhcChhhhhchhhhheecchhhhhcCccccCCCch
Confidence            4688888998877654  5788899999999887764       688999999999999999999999999999999999


Q ss_pred             CcEEEcCCCccc--ccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccccce
Q 002129          114 LRYLNLSGTEIR--TLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCS  190 (962)
Q Consensus       114 L~~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~  190 (962)
                      |++|||++|++.  .+|..|..++.|+.|+++. +..+.+|..+++|++|+.|.+.+|. +-++|.+++.|+.|++|++
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhi  180 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHI  180 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhc
Confidence            999999999987  6899999999999999999 5789999999999999999999999 8889999999999999964

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.48  E-value=1.1e-13  Score=160.38  Aligned_cols=83  Identities=18%  Similarity=0.346  Sum_probs=66.6

Q ss_pred             CcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccC
Q 002129           89 QSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSN  168 (962)
Q Consensus        89 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~  168 (962)
                      .+...|++++++++.+|..+.  .+|+.|+|++|+++.+|..+.  .+|++|++++| .+..+|..+.  .+|+.|++++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI  250 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence            457889999999999987764  479999999999999988764  58999999985 5778887664  4789999999


Q ss_pred             Ccccccccccc
Q 002129          169 TKSLEEMPVGI  179 (962)
Q Consensus       169 n~~~~~lp~~~  179 (962)
                      |. +..+|..+
T Consensus       251 N~-L~~LP~~l  260 (754)
T PRK15370        251 NR-ITELPERL  260 (754)
T ss_pred             Cc-cCcCChhH
Confidence            88 66777654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.46  E-value=2.1e-13  Score=158.04  Aligned_cols=202  Identities=24%  Similarity=0.360  Sum_probs=105.6

Q ss_pred             CCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCCCCCCCCceEEe
Q 002129          549 SSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKI  628 (962)
Q Consensus       549 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l  628 (962)
                      .+...|+++++ .++.+|.. .++.|+.|++++|. ++.+|...    .++|++|++++| .++.+|. ..+++|+.|++
T Consensus       178 ~~~~~L~L~~~-~LtsLP~~-Ip~~L~~L~Ls~N~-LtsLP~~l----~~nL~~L~Ls~N-~LtsLP~-~l~~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKIL-GLTTIPAC-IPEQITTLILDNNE-LKSLPENL----QGNIKTLYANSN-QLTSIPA-TLPDTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCC-CcCcCCcc-cccCCcEEEecCCC-CCcCChhh----ccCCCEEECCCC-ccccCCh-hhhccccEEEC
Confidence            35678888884 56677742 35789999999886 77777654    257888888874 4555554 23345555555


Q ss_pred             cccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCchhhhh
Q 002129          629 CHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAE  708 (962)
Q Consensus       629 ~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~~~  708 (962)
                      ++|. +..+|.                                               .++.+|+.|++++|.+. .+|.
T Consensus       249 s~N~-L~~LP~-----------------------------------------------~l~s~L~~L~Ls~N~L~-~LP~  279 (754)
T PRK15370        249 SINR-ITELPE-----------------------------------------------RLPSALQSLDLFHNKIS-CLPE  279 (754)
T ss_pred             cCCc-cCcCCh-----------------------------------------------hHhCCCCEEECcCCccC-cccc
Confidence            5542 222220                                               01145666666655433 3443


Q ss_pred             hccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccccCCCccc
Q 002129          709 MLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSL  788 (962)
Q Consensus       709 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L  788 (962)
                      .+.  ++|+.|++++|.+. .+|..+.  ++|+.|++++| .+..+|....  ++|+.|++++|. +..+|..+.  ++|
T Consensus       280 ~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~l~--~sL  348 (754)
T PRK15370        280 NLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSN-SLTALPETLP--PGLKTLEAGENA-LTSLPASLP--PEL  348 (754)
T ss_pred             ccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCC-ccccCCcccc--ccceeccccCCc-cccCChhhc--Ccc
Confidence            332  35566666555432 2333221  34555555555 3444443222  355555555554 333443331  455


Q ss_pred             ceeecCCCCCCCCCCCCCCCCccceEeecCchh
Q 002129          789 QELRIGKGVALPSLEEDGLPTNLHVLLINGNME  821 (962)
Q Consensus       789 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~  821 (962)
                      +.|++++| .+..+|. ..+++|++|++++|.+
T Consensus       349 ~~L~Ls~N-~L~~LP~-~lp~~L~~LdLs~N~L  379 (754)
T PRK15370        349 QVLDVSKN-QITVLPE-TLPPTITTLDVSRNAL  379 (754)
T ss_pred             cEEECCCC-CCCcCCh-hhcCCcCEEECCCCcC
Confidence            55555555 3333332 2234455555555443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.11  E-value=8.8e-12  Score=135.04  Aligned_cols=107  Identities=21%  Similarity=0.188  Sum_probs=49.6

Q ss_pred             CccEEEecCCCCch----hhhhhccCCCCcceEeecCCccccc----cCccccCCCCccEEEcccCCCccc----CCCCC
Q 002129          691 SLKLLLVWGCSKLE----SIAEMLDNNTSLEKINISGCGNLQT----LPSGLHNLCQLQEISIASCGNLVS----SPEGG  758 (962)
Q Consensus       691 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~l~~----~~~~~  758 (962)
                      .|++|++++|...+    .++..+..+++|+.|++++|.+...    +...+..+++|++|++++|+.-..    +....
T Consensus       166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~  245 (319)
T cd00116         166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL  245 (319)
T ss_pred             CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH
Confidence            45555555555442    1223344445566666665544321    223344455666666666532110    00000


Q ss_pred             -CCccccccccccccccc----ccCccccCCCcccceeecCCCC
Q 002129          759 -LPCAKLAMLAIYNCKRL----EALPKGLHNLKSLQELRIGKGV  797 (962)
Q Consensus       759 -~~~~~L~~L~l~~c~~l----~~~~~~~~~l~~L~~L~l~~~~  797 (962)
                       ...+.|+.|++++|...    ..+...+..+++|+++++++|.
T Consensus       246 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         246 LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence             01246666666666532    1222334445666667766663

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.11  E-value=2.7e-12  Score=130.17  Aligned_cols=275  Identities=16%  Similarity=0.267  Sum_probs=150.3

Q ss_pred             cceeecccccCccc--cCccCCCCCCccEEEecCCCCccccC---CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCcc
Q 002129          527 LEYLRLSYCEGLVK--LPQSSLSLSSLREIEIYGCRSLVSFP---EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLE  601 (962)
Q Consensus       527 L~~L~ls~~~~l~~--~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~  601 (962)
                      |+.|.+++|.....  +-.....+|++++|.+.+|..+++..   -..++++|+++++..|..++.......+..+++|+
T Consensus       140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~  219 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK  219 (483)
T ss_pred             cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence            55555555544332  22234457777777777777666433   13457788888888888787776665668889999


Q ss_pred             EEEecCCCCCCcccCC---CCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccc
Q 002129          602 ILEISGCDSLTYIAGV---QLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPA  678 (962)
Q Consensus       602 ~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  678 (962)
                      +++++.|+.++.-.-.   .....++.+...+|..++.-..                    ..                 
T Consensus       220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l--------------------~~-----------------  262 (483)
T KOG4341|consen  220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEAL--------------------LK-----------------  262 (483)
T ss_pred             HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHH--------------------HH-----------------
Confidence            9999999877761111   1223344454455543321110                    00                 


Q ss_pred             cccccccCCCccCccEEEecCCCCchh--hhhhccCCCCcceEeecCCccccccC--ccccCCCCccEEEcccCCCcccC
Q 002129          679 TLESLEVGNLPPSLKLLLVWGCSKLES--IAEMLDNNTSLEKINISGCGNLQTLP--SGLHNLCQLQEISIASCGNLVSS  754 (962)
Q Consensus       679 ~l~~l~~~~l~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~L~~~~~l~~~  754 (962)
                          .  +.-...+.++++.+|..++.  +...-.++..|+.|+.++|...++.+  +--.+.++|+.|.++.|+.++..
T Consensus       263 ----~--~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~  336 (483)
T KOG4341|consen  263 ----A--AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR  336 (483)
T ss_pred             ----H--hccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh
Confidence                0  00002344444555544433  23444556666666666666544321  11234566666666666655443


Q ss_pred             CCC--CCCccccccccccccccccc--CccccCCCcccceeecCCCCCCCCC-----CCC-CCCCccceEeecCchhhhH
Q 002129          755 PEG--GLPCAKLAMLAIYNCKRLEA--LPKGLHNLKSLQELRIGKGVALPSL-----EED-GLPTNLHVLLINGNMEIWK  824 (962)
Q Consensus       755 ~~~--~~~~~~L~~L~l~~c~~l~~--~~~~~~~l~~L~~L~l~~~~~l~~~-----~~~-~~~~~L~~L~l~~~~~~~~  824 (962)
                      ...  ...++.|+.+++.+|.....  +-..-.+++.|+.+.+++|..+++.     ... .....|+.+.+++|+.+..
T Consensus       337 ~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d  416 (483)
T KOG4341|consen  337 GFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD  416 (483)
T ss_pred             hhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence            222  23356677777766653321  1122245667777777776655443     111 2235566677777776665


Q ss_pred             HHHhccccccccCccceeecccC
Q 002129          825 SMIERGRGFHRFSSLRQLTIMNC  847 (962)
Q Consensus       825 ~~~~~~~~~~~l~~L~~L~l~~~  847 (962)
                      ...   ..+..+++|+.+++.+|
T Consensus       417 ~~L---e~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  417 ATL---EHLSICRNLERIELIDC  436 (483)
T ss_pred             HHH---HHHhhCcccceeeeech
Confidence            443   35666677777777765

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.10  E-value=1.6e-11  Score=133.09  Aligned_cols=107  Identities=21%  Similarity=0.247  Sum_probs=61.5

Q ss_pred             cCccEEEecCCCCch----hhhhhccCCCCcceEeecCCccccc----cCccccCCCCccEEEcccCCCcc----cCCCC
Q 002129          690 PSLKLLLVWGCSKLE----SIAEMLDNNTSLEKINISGCGNLQT----LPSGLHNLCQLQEISIASCGNLV----SSPEG  757 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~l~----~~~~~  757 (962)
                      ++|++|++++|.+.+    .++..+..+++|++|++++|...+.    ++..+..+++|++|++++|..-.    .++..
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            578888888887663    2445667778888888888876532    33344556788888888874221    11122


Q ss_pred             CCCcccccccccccccccccCcccc-----CCCcccceeecCCC
Q 002129          758 GLPCAKLAMLAIYNCKRLEALPKGL-----HNLKSLQELRIGKG  796 (962)
Q Consensus       758 ~~~~~~L~~L~l~~c~~l~~~~~~~-----~~l~~L~~L~l~~~  796 (962)
                      ...+++|++|++++|+........+     ...+.|++|++++|
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n  260 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN  260 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence            2234566666666665332111111     12356666666665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.99  E-value=1.7e-11  Score=124.53  Aligned_cols=142  Identities=19%  Similarity=0.300  Sum_probs=95.8

Q ss_pred             ccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccc--cCccCCCCCCccEEEecCCCCccccC---
Q 002129          492 QDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVK--LPQSSLSLSSLREIEIYGCRSLVSFP---  566 (962)
Q Consensus       492 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~--~~~~~~~l~~L~~L~l~~~~~l~~~~---  566 (962)
                      ..+++|++|++..|..+++.....    +..-+++|++|+++-|+.+..  +.....++..++.+.+.+|..++.-.   
T Consensus       187 ~~C~~l~~l~L~~c~~iT~~~Lk~----la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~  262 (483)
T KOG4341|consen  187 RYCRKLRHLNLHSCSSITDVSLKY----LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLK  262 (483)
T ss_pred             HhcchhhhhhhcccchhHHHHHHH----HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHH
Confidence            567888888888888877765542    333358888888888877663  33344566667777777776554211   


Q ss_pred             CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCC---CCCCCCceEEecccCCCccc
Q 002129          567 EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGV---QLPPSLKRLKICHCDNIRTL  637 (962)
Q Consensus       567 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~l~~l  637 (962)
                      ..+....+.++++..|..+++......+..+..|+.|..++|..++..+..   +..++|+.+.+.+|..+++.
T Consensus       263 ~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~  336 (483)
T KOG4341|consen  263 AAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR  336 (483)
T ss_pred             HhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh
Confidence            123455577777778887877765555567788888888888877765432   55578888888888765543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.98  E-value=5.9e-10  Score=104.71  Aligned_cols=132  Identities=25%  Similarity=0.277  Sum_probs=56.0

Q ss_pred             ccccCCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhh
Q 002129           53 GDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESV  131 (962)
Q Consensus        53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i  131 (962)
                      +.+.+..++|.|.+.++.        ......+. .+.+|++|+|++|.|+.+ +.+..+++|++|++++|.|+.+++.+
T Consensus        13 ~~~~n~~~~~~L~L~~n~--------I~~Ie~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l   83 (175)
T PF14580_consen   13 AQYNNPVKLRELNLRGNQ--------ISTIENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGL   83 (175)
T ss_dssp             -------------------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHH
T ss_pred             cccccccccccccccccc--------cccccchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccch
Confidence            444566677888776653        22334565 678999999999999988 46888999999999999999997665


Q ss_pred             -hccCCccEEecCCCcchhccc--hhhhccCCCcEEeccCCcccccccc----cccccccccccceeeecC
Q 002129          132 -SKLYNLHSLLLEDCDRLEKLC--ADMGNLVKLHHLKNSNTKSLEEMPV----GIGRLTCLQTLCSFVVGK  195 (962)
Q Consensus       132 -~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~n~~~~~lp~----~~~~L~~L~~L~~~~~~~  195 (962)
                       ..+++|++|++++| .+..+-  ..++.+++|++|++.+|. +...+.    -+..+++|+.|+...+..
T Consensus        84 ~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~  152 (175)
T PF14580_consen   84 DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTE  152 (175)
T ss_dssp             HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred             HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEccH
Confidence             46899999999985 555543  457889999999999998 554443    277899999997655543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.84  E-value=1.3e-10  Score=122.60  Aligned_cols=107  Identities=27%  Similarity=0.488  Sum_probs=66.5

Q ss_pred             cccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhcc
Q 002129           79 PSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNL  158 (962)
Q Consensus        79 ~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L  158 (962)
                      ..+|.++..+..|..+.|..|.+..+|.+++++..|.||||+.|++..+|..++.|+ |++|-+++ ++++.+|++|+.+
T Consensus        88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~  165 (722)
T KOG0532|consen   88 SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLL  165 (722)
T ss_pred             ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccc
Confidence            344555555556666666666666666666666666666666666666666655554 66666665 4566666666666


Q ss_pred             CCCcEEeccCCccccccccccccccccccc
Q 002129          159 VKLHHLKNSNTKSLEEMPVGIGRLTCLQTL  188 (962)
Q Consensus       159 ~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L  188 (962)
                      ..|.+||.+.|. +..+|..++.+.+|+.|
T Consensus       166 ~tl~~ld~s~ne-i~slpsql~~l~slr~l  194 (722)
T KOG0532|consen  166 PTLAHLDVSKNE-IQSLPSQLGYLTSLRDL  194 (722)
T ss_pred             hhHHHhhhhhhh-hhhchHHhhhHHHHHHH
Confidence            666666666666 56666666666666655

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.83  E-value=2.1e-09  Score=101.02  Aligned_cols=103  Identities=28%  Similarity=0.398  Sum_probs=37.8

Q ss_pred             ccCCcccEEEecCCCCcccCcccc-CCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhh-hccCCCcE
Q 002129           86 LKLQSLRVFSLRGYRILELPDSVG-DLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADM-GNLVKLHH  163 (962)
Q Consensus        86 ~~l~~L~~L~L~~~~i~~lp~~~~-~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~  163 (962)
                      .+..++|.|+|++|.|+.+ +.++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++ |.+..+++.+ ..+++|++
T Consensus        16 ~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCE
Confidence            3566789999999999988 4565 6899999999999999995 588999999999999 5787887666 47999999


Q ss_pred             EeccCCcccccccc--cccccccccccceee
Q 002129          164 LKNSNTKSLEEMPV--GIGRLTCLQTLCSFV  192 (962)
Q Consensus       164 L~l~~n~~~~~lp~--~~~~L~~L~~L~~~~  192 (962)
                      |++++|+ +..+..  .++.+++|+.|++..
T Consensus        93 L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~  122 (175)
T PF14580_consen   93 LYLSNNK-ISDLNELEPLSSLPKLRVLSLEG  122 (175)
T ss_dssp             EE-TTS----SCCCCGGGGG-TT--EEE-TT
T ss_pred             EECcCCc-CCChHHhHHHHcCCCcceeeccC
Confidence            9999998 665532  255566666665443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.77  E-value=6.3e-09  Score=115.92  Aligned_cols=106  Identities=32%  Similarity=0.461  Sum_probs=87.3

Q ss_pred             ccccCCcccEEEecCCCCcccCccccCCC-cCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCc
Q 002129           84 KLLKLQSLRVFSLRGYRILELPDSVGDLR-YLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLH  162 (962)
Q Consensus        84 ~~~~l~~L~~L~L~~~~i~~lp~~~~~L~-~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~  162 (962)
                      .+..++.++.|++.+|.++.+|.....+. +|++|++++|.+..+|..++.+++|+.|++++ +.+..+|...+.+.+|+
T Consensus       111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~  189 (394)
T COG4886         111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLN  189 (394)
T ss_pred             hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhh
Confidence            34466788899999999998888888885 89999999999998887888999999999998 56888887777888999


Q ss_pred             EEeccCCccccccccccccccccccccee
Q 002129          163 HLKNSNTKSLEEMPVGIGRLTCLQTLCSF  191 (962)
Q Consensus       163 ~L~l~~n~~~~~lp~~~~~L~~L~~L~~~  191 (962)
                      .|++++|. +..+|..++.+..|++|.+.
T Consensus       190 ~L~ls~N~-i~~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         190 NLDLSGNK-ISDLPPEIELLSALEELDLS  217 (394)
T ss_pred             heeccCCc-cccCchhhhhhhhhhhhhhc
Confidence            99999988 88888877777777777543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=2.7e-09  Score=109.38  Aligned_cols=133  Identities=20%  Similarity=0.114  Sum_probs=58.3

Q ss_pred             cCccEEEecCCCCchh-hhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCC--CCCCcccccc
Q 002129          690 PSLKLLLVWGCSKLES-IAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPE--GGLPCAKLAM  766 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~--~~~~~~~L~~  766 (962)
                      +.|+.|.++.|..... +-..+..+|+|+.|++++|.....-.....-+..|++|+|++|+.+. ++.  ....+|.|+.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence            3444444555544422 22334445555555555553222111222334555555555553322 221  1233455555


Q ss_pred             cccccccccc-cCccc-----cCCCcccceeecCCCCC--CCCCCCCCCCCccceEeecCchhhh
Q 002129          767 LAIYNCKRLE-ALPKG-----LHNLKSLQELRIGKGVA--LPSLEEDGLPTNLHVLLINGNMEIW  823 (962)
Q Consensus       767 L~l~~c~~l~-~~~~~-----~~~l~~L~~L~l~~~~~--l~~~~~~~~~~~L~~L~l~~~~~~~  823 (962)
                      |.++.|.... .+|+.     ...+++|++|++..|+.  ...+.......+|+.|.+..|++..
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            5555554221 11221     23456666666666532  2222223444555555555555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=3.3e-09  Score=108.78  Aligned_cols=135  Identities=19%  Similarity=0.135  Sum_probs=63.2

Q ss_pred             ccccccccccccccc-cCccccCCCcccceeecCCCCCC-CCCCCCCCCCccceEeecCchhhhHHHHhccccccccCcc
Q 002129          762 AKLAMLAIYNCKRLE-ALPKGLHNLKSLQELRIGKGVAL-PSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSL  839 (962)
Q Consensus       762 ~~L~~L~l~~c~~l~-~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  839 (962)
                      +.|+.|.+++|.... .+......+|+|+.|++.+|..+ ..-.....++.|++|++++|+++.....   .....+|.|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~---~~~~~l~~L  273 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG---YKVGTLPGL  273 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc---cccccccch
Confidence            344444444444321 11122334555555555555321 1111123445555555555555443211   335666677


Q ss_pred             ceeecccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCccccc--ccccCCCcCeEeccC
Q 002129          840 RQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTS--SIVDLQNLTGLVLGN  904 (962)
Q Consensus       840 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~  904 (962)
                      +.|+++.|......+|+..    .......+++|++|++.. +.++..++  .+..+++|+.|.+..
T Consensus       274 ~~Lnls~tgi~si~~~d~~----s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  274 NQLNLSSTGIASIAEPDVE----SLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITL  335 (505)
T ss_pred             hhhhccccCcchhcCCCcc----chhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccc
Confidence            7777776654444444321    111123567777777777 34444332  234455566655443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.63  E-value=3.6e-08  Score=109.84  Aligned_cols=126  Identities=25%  Similarity=0.354  Sum_probs=107.0

Q ss_pred             ccCCCceeEEeeccccCCCCCCCCcccccccccCC-cccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhc
Q 002129           55 LYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQ-SLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSK  133 (962)
Q Consensus        55 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~  133 (962)
                      ....+.+..|.+..+.       ..++++....++ +|+.|++++|.+..+|..++.+++|+.|++++|+++++|...+.
T Consensus       112 ~~~~~~l~~L~l~~n~-------i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~  184 (394)
T COG4886         112 LLELTNLTSLDLDNNN-------ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN  184 (394)
T ss_pred             hhcccceeEEecCCcc-------cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhh
Confidence            3455678888776654       566777777775 99999999999999999999999999999999999999998889


Q ss_pred             cCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccccc
Q 002129          134 LYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLC  189 (962)
Q Consensus       134 L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~  189 (962)
                      +.+|+.|++++ +.+..+|..++.+..|++|.+++|. ....+..++++.++..|.
T Consensus       185 ~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~  238 (394)
T COG4886         185 LSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLE  238 (394)
T ss_pred             hhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccc
Confidence            99999999999 6799999988889999999999997 556666677777766663

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.58  E-value=5.6e-08  Score=74.77  Aligned_cols=57  Identities=32%  Similarity=0.503  Sum_probs=38.3

Q ss_pred             CcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCC
Q 002129           89 QSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDC  145 (962)
Q Consensus        89 ~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~  145 (962)
                      ++|++|++++|+++.+| ..|.++++|++|++++|.++.+|+ .|.++++|++|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            35677777777777665 356677777777777777776653 4667777777777664

...

>PLN03150 hypothetical protein; Provisional

Probab=98.55  E-value=1.1e-07  Score=110.60  Aligned_cols=100  Identities=22%  Similarity=0.317  Sum_probs=88.2

Q ss_pred             cccEEEecCCCCc-ccCccccCCCcCcEEEcCCCccc-ccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEecc
Q 002129           90 SLRVFSLRGYRIL-ELPDSVGDLRYLRYLNLSGTEIR-TLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNS  167 (962)
Q Consensus        90 ~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~  167 (962)
                      .++.|+|++|.++ .+|..++.+++|++|+|++|.+. .+|..++.+++|++|+|++|...+.+|+.+++|++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4888999999988 78999999999999999999997 889999999999999999988778999999999999999999


Q ss_pred             CCccccccccccccc-ccccccc
Q 002129          168 NTKSLEEMPVGIGRL-TCLQTLC  189 (962)
Q Consensus       168 ~n~~~~~lp~~~~~L-~~L~~L~  189 (962)
                      +|.+.+.+|..++.+ .++..++
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~  521 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFN  521 (623)
T ss_pred             CCcccccCChHHhhccccCceEE
Confidence            999778999887653 3444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.54  E-value=1.6e-08  Score=98.30  Aligned_cols=101  Identities=34%  Similarity=0.440  Sum_probs=52.1

Q ss_pred             cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCC---------------------
Q 002129           87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDC---------------------  145 (962)
Q Consensus        87 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~---------------------  145 (962)
                      -++.|+.|||++|.|+.+-+++.-++.+|.|++|+|.|..+-. +..|++|+.|||++|                     
T Consensus       282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            3445555555555555555555555555555555555554422 555555555555553                     


Q ss_pred             -cchhccchhhhccCCCcEEeccCCccccccc--ccccccccccccce
Q 002129          146 -DRLEKLCADMGNLVKLHHLKNSNTKSLEEMP--VGIGRLTCLQTLCS  190 (962)
Q Consensus       146 -~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp--~~~~~L~~L~~L~~  190 (962)
                       +.++.+ .++++|.+|..||+++|+ ++.+-  .+||+|+.|+++.+
T Consensus       361 ~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  361 QNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRL  406 (490)
T ss_pred             hhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhh
Confidence             233333 245555555666666655 44332  23555555555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.52  E-value=5.3e-07  Score=95.29  Aligned_cols=93  Identities=30%  Similarity=0.589  Sum_probs=52.7

Q ss_pred             ccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccccCCCcccc
Q 002129          710 LDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQ  789 (962)
Q Consensus       710 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~  789 (962)
                      +..+.+++.|++++| .++.+|.   -.++|++|.+++|..+..+|... + ++|+.|++++|..+..+|.      +|+
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P-~nLe~L~Ls~Cs~L~sLP~------sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI-P-EGLEKLTVCHCPEISGLPE------SVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh-h-hhhhheEccCccccccccc------ccc
Confidence            445677777777777 4555552   12357777777777777777533 2 3777777777765655553      345


Q ss_pred             eeecCCCCCCCCCCCCCCCCccceEeec
Q 002129          790 ELRIGKGVALPSLEEDGLPTNLHVLLIN  817 (962)
Q Consensus       790 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~  817 (962)
                      .|++.++ ....++  .+|++|+.|.+.
T Consensus       116 ~L~L~~n-~~~~L~--~LPssLk~L~I~  140 (426)
T PRK15386        116 SLEIKGS-ATDSIK--NVPNGLTSLSIN  140 (426)
T ss_pred             eEEeCCC-CCcccc--cCcchHhheecc
Confidence            5555432 222221  233455555553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.48  E-value=2.1e-08  Score=106.25  Aligned_cols=108  Identities=28%  Similarity=0.402  Sum_probs=67.6

Q ss_pred             ccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccC
Q 002129           80 SMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLV  159 (962)
Q Consensus        80 ~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~  159 (962)
                      .+|..++.+ -|++|-+++|+++.+|+.++.+.+|..||.+.|.+..+|..++.|..|+.|.++. +.+..+|++++ --
T Consensus       135 ~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~-~L  211 (722)
T KOG0532|consen  135 HLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELC-SL  211 (722)
T ss_pred             cCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHh-CC
Confidence            334444433 2566666666666666666666666666666666666666666666666666666 34556666666 33


Q ss_pred             CCcEEeccCCccccccccccccccccccccee
Q 002129          160 KLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSF  191 (962)
Q Consensus       160 ~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~  191 (962)
                      .|..||++.|+ +..+|..|.+|+.||+|.+-
T Consensus       212 pLi~lDfScNk-is~iPv~fr~m~~Lq~l~Le  242 (722)
T KOG0532|consen  212 PLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLE  242 (722)
T ss_pred             ceeeeecccCc-eeecchhhhhhhhheeeeec
Confidence            46667777776 67777777777777777443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.43  E-value=2.2e-07  Score=71.47  Aligned_cols=58  Identities=33%  Similarity=0.409  Sum_probs=51.1

Q ss_pred             CcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhccc-hhhhccCCCcEEeccCCc
Q 002129          112 RYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLC-ADMGNLVKLHHLKNSNTK  170 (962)
Q Consensus       112 ~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~n~  170 (962)
                      ++|++|++++|+++.+|. .|..+++|++|++++| .+..+| ..|.++++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            479999999999999985 5899999999999985 566665 568999999999999997

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.42  E-value=9.7e-07  Score=93.38  Aligned_cols=57  Identities=30%  Similarity=0.634  Sum_probs=26.7

Q ss_pred             CCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCC
Q 002129          549 SSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLT  612 (962)
Q Consensus       549 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~  612 (962)
                      .+++.|++++| .++.+|  ..+++|+.|.+++|..++.+|..+    .++|++|++++|..+.
T Consensus        52 ~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~  108 (426)
T PRK15386         52 RASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEIS  108 (426)
T ss_pred             cCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCCchh----hhhhhheEccCccccc
Confidence            34455555554 444444  234445555555555554444321    1345555555554443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.40  E-value=5.6e-08  Score=94.59  Aligned_cols=132  Identities=24%  Similarity=0.222  Sum_probs=89.5

Q ss_pred             ccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccc
Q 002129          108 VGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQT  187 (962)
Q Consensus       108 ~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~  187 (962)
                      +..-+.|+.||||+|.|+.+-+++.-++.++.|++++| .+..+- .+..|.+|++||+++|. +.++-.+-.+|.+.++
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQ-NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKT  356 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeeh-hhhhcccceEeecccch-hHhhhhhHhhhcCEee
Confidence            34456799999999999999999999999999999995 565553 48899999999999998 6666555566777777


Q ss_pred             cceeeecCCCCCCcccccccccccceeEEecCCCCcchhhh-hhhccCCCCCCCcEEEEeecCC
Q 002129          188 LCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDA-EDAQLDRKENLKELWLRWTLYG  250 (962)
Q Consensus       188 L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~  250 (962)
                      |.+..      ..++.++.|..|. ++.--.+... ++... ....+.+++.|+.+.+.+|...
T Consensus       357 L~La~------N~iE~LSGL~KLY-SLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  357 LKLAQ------NKIETLSGLRKLY-SLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             eehhh------hhHhhhhhhHhhh-hheecccccc-chhhHHHhcccccccHHHHHhhcCCCcc
Confidence            75533      2334444444333 1111111111 11111 1235788999999999877643

>PLN03150 hypothetical protein; Provisional

Probab=98.33  E-value=7.3e-07  Score=103.90  Aligned_cols=113  Identities=16%  Similarity=0.117  Sum_probs=98.6

Q ss_pred             CccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccc
Q 002129          691 SLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIY  770 (962)
Q Consensus       691 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~  770 (962)
                      .++.|+|++|...+.+|..++.+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|...+.+|..+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999988999999999999999999997777888888888999999999


Q ss_pred             cccccccCccccCCC-cccceeecCCCCCCCCCC
Q 002129          771 NCKRLEALPKGLHNL-KSLQELRIGKGVALPSLE  803 (962)
Q Consensus       771 ~c~~l~~~~~~~~~l-~~L~~L~l~~~~~l~~~~  803 (962)
                      +|...+.+|..+... .++..+++.+|+.+...|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            999888999877653 567788898887665544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.28  E-value=1.4e-07  Score=94.39  Aligned_cols=34  Identities=29%  Similarity=0.327  Sum_probs=18.4

Q ss_pred             cCccEEEecCCCCchh----hhhhccCCCCcceEeecC
Q 002129          690 PSLKLLLVWGCSKLES----IAEMLDNNTSLEKINISG  723 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~  723 (962)
                      .+++++++++|.+-..    +...+.+.++|+..+++.
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd   67 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD   67 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh
Confidence            5667777777665433    223344455555555553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.26  E-value=9.1e-07  Score=61.78  Aligned_cols=40  Identities=30%  Similarity=0.486  Sum_probs=26.3

Q ss_pred             CcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccC
Q 002129           89 QSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLP  128 (962)
Q Consensus        89 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp  128 (962)
                      ++|++|++++|+|+.+|..+++|++|++|++++|+|+++|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            3567777777777777666777777777777777776654

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.25  E-value=1.7e-07  Score=93.82  Aligned_cols=88  Identities=23%  Similarity=0.193  Sum_probs=54.2

Q ss_pred             cccccCCcccEEEecCCCCc-----ccCccccCCCcCcEEEcCCCcc----cccChh-------hhccCCccEEecCCCc
Q 002129           83 PKLLKLQSLRVFSLRGYRIL-----ELPDSVGDLRYLRYLNLSGTEI----RTLPES-------VSKLYNLHSLLLEDCD  146 (962)
Q Consensus        83 ~~~~~l~~L~~L~L~~~~i~-----~lp~~~~~L~~L~~L~Ls~n~i----~~lp~~-------i~~L~~L~~L~L~~~~  146 (962)
                      +..-.+..++.++|++|.+.     .+-+.+.+.++||.-++|.--.    .++|+.       +...++|++||||.|-
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            33337778888888888876     2445567777888888876522    245543       2234577777777743


Q ss_pred             chhccc----hhhhccCCCcEEeccCCc
Q 002129          147 RLEKLC----ADMGNLVKLHHLKNSNTK  170 (962)
Q Consensus       147 ~~~~lp----~~i~~L~~L~~L~l~~n~  170 (962)
                      .-..-+    +-+..++.|++|+|.+|.
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~G  131 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCG  131 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCC
Confidence            222222    224566777777777776

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.12  E-value=3.9e-07  Score=101.45  Aligned_cols=105  Identities=27%  Similarity=0.333  Sum_probs=78.6

Q ss_pred             ccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCC
Q 002129           82 LPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKL  161 (962)
Q Consensus        82 ~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L  161 (962)
                      ...+..+++|++|++.+|.|..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++++| .+..++ ++..+++|
T Consensus        88 ~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L  164 (414)
T KOG0531|consen   88 LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDIS-GLESLKSL  164 (414)
T ss_pred             hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhcc-CCccchhh
Confidence            3345578888899999988888865588888999999999988888 34777888888999884 555553 56668888


Q ss_pred             cEEeccCCccccccccc-ccccccccccce
Q 002129          162 HHLKNSNTKSLEEMPVG-IGRLTCLQTLCS  190 (962)
Q Consensus       162 ~~L~l~~n~~~~~lp~~-~~~L~~L~~L~~  190 (962)
                      +.+++++|. +..+... ...+.+++.+.+
T Consensus       165 ~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l  193 (414)
T KOG0531|consen  165 KLLDLSYNR-IVDIENDELSELISLEELDL  193 (414)
T ss_pred             hcccCCcch-hhhhhhhhhhhccchHHHhc
Confidence            888888888 5555443 466666666644

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=1e-07  Score=92.89  Aligned_cols=183  Identities=13%  Similarity=0.088  Sum_probs=103.4

Q ss_pred             cCccEEEecCCCCchh-hhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccc
Q 002129          690 PSLKLLLVWGCSKLES-IAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLA  768 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~  768 (962)
                      +.|+.||+++-.+... +...+..|.+|+.|.+.++.+...+...+.+-.+|+.|+|+.|..++.....           
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~-----------  253 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ-----------  253 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH-----------
Confidence            5688889888766543 4566778889999999988887777777777788888888888665543221           


Q ss_pred             cccccccccCccccCCCcccceeecCCCCCCCCCC---CCCCCCccceEeecCchhhhHH-HHhccccccccCccceeec
Q 002129          769 IYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLE---EDGLPTNLHVLLINGNMEIWKS-MIERGRGFHRFSSLRQLTI  844 (962)
Q Consensus       769 l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~l~~L~~L~l  844 (962)
                                 -.+.+++.|.+|++++|......-   ....-.+|+.|+++|+...... -.+  .-...+|+|.+||+
T Consensus       254 -----------ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~--tL~~rcp~l~~LDL  320 (419)
T KOG2120|consen  254 -----------LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS--TLVRRCPNLVHLDL  320 (419)
T ss_pred             -----------HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH--HHHHhCCceeeecc
Confidence                       012344444444444443222110   0122345555555555432211 000  22355677777777


Q ss_pred             ccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcc-cccccccCCCcCeEeccCC
Q 002129          845 MNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLER-LTSSIVDLQNLTGLVLGNC  905 (962)
Q Consensus       845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~l~~c  905 (962)
                      ++|...-.         +...++..++.|++|.++.|..+-- ---.+.+-|.|.+|++.+|
T Consensus       321 SD~v~l~~---------~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  321 SDSVMLKN---------DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ccccccCc---------hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            77521111         1112234567777777777754321 0012355667888888777

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=2.5e-07  Score=90.23  Aligned_cols=57  Identities=19%  Similarity=0.293  Sum_probs=29.7

Q ss_pred             cCccEEEecCCCCchh-hhhhccCCCCcceEeecCCccccccCc---cccCCCCccEEEcccC
Q 002129          690 PSLKLLLVWGCSKLES-IAEMLDNNTSLEKINISGCGNLQTLPS---GLHNLCQLQEISIASC  748 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~L~~~  748 (962)
                      ++|..||+++|..+.. ....|..++.|++|.++.|..+-  |.   .+...|+|.+|++.+|
T Consensus       313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccc
Confidence            4455555555543332 22345556666666666665432  22   2345666777776665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.97  E-value=7.9e-06  Score=57.07  Aligned_cols=40  Identities=33%  Similarity=0.497  Sum_probs=27.9

Q ss_pred             CcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccc
Q 002129          112 RYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLC  152 (962)
Q Consensus       112 ~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp  152 (962)
                      ++|++|++++|+|+++|..+++|++|++|++++| .+..+|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence            4678888888888888777888888888888875 454443

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.90  E-value=4.7e-06  Score=92.86  Aligned_cols=241  Identities=22%  Similarity=0.209  Sum_probs=119.2

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCC-CCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPE-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEIL  603 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L  603 (962)
                      ..++.+.++.|...+ +-..+..+.+|+.|++.+ +.++.+.. ...+++|++|++++|. ++.+...   ..++.|+.|
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l---~~l~~L~~L  145 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGL---STLTLLKEL  145 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccc-cchhhcccchhhhhcchheeccccc-cccccch---hhccchhhh
Confidence            455555555544332 222355677777777777 34555555 5666777777777766 4333322   334556666


Q ss_pred             EecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCcccccccc
Q 002129          604 EISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESL  683 (962)
Q Consensus       604 ~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l  683 (962)
                      ++++| .++.+.....+                                                               
T Consensus       146 ~l~~N-~i~~~~~~~~l---------------------------------------------------------------  161 (414)
T KOG0531|consen  146 NLSGN-LISDISGLESL---------------------------------------------------------------  161 (414)
T ss_pred             eeccC-cchhccCCccc---------------------------------------------------------------
Confidence            66663 33333222222                                                               


Q ss_pred             ccCCCccCccEEEecCCCCchhhh-hhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcc
Q 002129          684 EVGNLPPSLKLLLVWGCSKLESIA-EMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCA  762 (962)
Q Consensus       684 ~~~~l~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~  762 (962)
                            ..|+.+++++|.+...-+ . ...+.+++.+++.+|....  ...+..+..+..+++..|.....-+.......
T Consensus       162 ------~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~  232 (414)
T KOG0531|consen  162 ------KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEGLNELVML  232 (414)
T ss_pred             ------hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccCcccchhH
Confidence                  455556666655444433 2 4566666666666655433  12233344444445555522221111111111


Q ss_pred             cccccccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCcccee
Q 002129          763 KLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQL  842 (962)
Q Consensus       763 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L  842 (962)
                      .|+.+++.+++ +..++.++..+..+..+++.++ .+..+......+.+..+....+.................+.++..
T Consensus       233 ~L~~l~l~~n~-i~~~~~~~~~~~~l~~l~~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  233 HLRELYLSGNR-ISRSPEGLENLKNLPVLDLSSN-RISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHHhcccCc-cccccccccccccccccchhhc-cccccccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            26777777776 3444355666677777777665 333333333445555555555554322111100113444555555


Q ss_pred             eccc
Q 002129          843 TIMN  846 (962)
Q Consensus       843 ~l~~  846 (962)
                      .+.+
T Consensus       311 ~~~~  314 (414)
T KOG0531|consen  311 TLEL  314 (414)
T ss_pred             cccc
Confidence            5554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.82  E-value=2.9e-07  Score=100.48  Aligned_cols=125  Identities=26%  Similarity=0.245  Sum_probs=83.0

Q ss_pred             ccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccccccc
Q 002129          692 LKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYN  771 (962)
Q Consensus       692 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~  771 (962)
                      |...+.+.|. +..+-.+++-++.|+.|+|++|+....  +.+..++.|++|||++| .+..+|.-...-..|..|.+++
T Consensus       166 L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             Hhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccc-hhccccccchhhhhheeeeecc
Confidence            3333444433 333445666777788888888776553  25777888888888888 6777776433323688888888


Q ss_pred             ccccccCccccCCCcccceeecCCCCCCCCCC---CCCCCCccceEeecCchhhh
Q 002129          772 CKRLEALPKGLHNLKSLQELRIGKGVALPSLE---EDGLPTNLHVLLINGNMEIW  823 (962)
Q Consensus       772 c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~  823 (962)
                      |. +..+ .++.++.+|+.||+++| .+....   ..+.+..|++|++.||++--
T Consensus       242 N~-l~tL-~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  242 NA-LTTL-RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             cH-HHhh-hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            87 3333 36788888888888887 443332   23566788888888887643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.75  E-value=5.4e-06  Score=71.53  Aligned_cols=90  Identities=26%  Similarity=0.295  Sum_probs=65.1

Q ss_pred             cCCcccEEEecCCCCcccCcccc-CCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEe
Q 002129           87 KLQSLRVFSLRGYRILELPDSVG-DLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLK  165 (962)
Q Consensus        87 ~l~~L~~L~L~~~~i~~lp~~~~-~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~  165 (962)
                      ...+|...+|++|.+..+|..|. ..+..+.|+|++|.|.++|..+..++.|+.|+++. |.+...|..|..|.+|-.|+
T Consensus        51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHhc
Confidence            55567777777777777777763 34477777788888877877777777888888877 45666777777777777777


Q ss_pred             ccCCccccccccc
Q 002129          166 NSNTKSLEEMPVG  178 (962)
Q Consensus       166 l~~n~~~~~lp~~  178 (962)
                      ..+|. ...+|..
T Consensus       130 s~~na-~~eid~d  141 (177)
T KOG4579|consen  130 SPENA-RAEIDVD  141 (177)
T ss_pred             CCCCc-cccCcHH
Confidence            77776 5556544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.66  E-value=5.7e-06  Score=71.38  Aligned_cols=101  Identities=17%  Similarity=0.251  Sum_probs=85.7

Q ss_pred             cCCcccEEEecCCCCcccCcc---ccCCCcCcEEEcCCCcccccChhhhcc-CCccEEecCCCcchhccchhhhccCCCc
Q 002129           87 KLQSLRVFSLRGYRILELPDS---VGDLRYLRYLNLSGTEIRTLPESVSKL-YNLHSLLLEDCDRLEKLCADMGNLVKLH  162 (962)
Q Consensus        87 ~l~~L~~L~L~~~~i~~lp~~---~~~L~~L~~L~Ls~n~i~~lp~~i~~L-~~L~~L~L~~~~~~~~lp~~i~~L~~L~  162 (962)
                      ..+.+..++|+.|.+..+++.   +....+|+..+|++|.+..+|+.|... +-.++|++++ +.+..+|+++..++.|+
T Consensus        25 dakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr  103 (177)
T KOG4579|consen   25 DAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALR  103 (177)
T ss_pred             HHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhh
Confidence            445677899999998877654   567788999999999999999887654 5899999998 68999999999999999


Q ss_pred             EEeccCCcccccccccccccccccccc
Q 002129          163 HLKNSNTKSLEEMPVGIGRLTCLQTLC  189 (962)
Q Consensus       163 ~L~l~~n~~~~~lp~~~~~L~~L~~L~  189 (962)
                      .|+++.|. +...|.-|..|.+|-.|+
T Consensus       104 ~lNl~~N~-l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen  104 SLNLRFNP-LNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             hcccccCc-cccchHHHHHHHhHHHhc
Confidence            99999999 777888888887777774

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.64  E-value=4.2e-06  Score=96.61  Aligned_cols=110  Identities=28%  Similarity=0.497  Sum_probs=52.1

Q ss_pred             hhcceeecccccCccc--cCccCCCCCCccEEEecCC-CCccccC-----CCCCCCCCcEEEEcCCCCCCCChhhhhcCC
Q 002129          525 ELLEYLRLSYCEGLVK--LPQSSLSLSSLREIEIYGC-RSLVSFP-----EVALPSKLKKIEISSCDALKSLPEAWMCDT  596 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~--~~~~~~~l~~L~~L~l~~~-~~l~~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  596 (962)
                      +.|+.+.+.+|..+..  +-.....++.|++|++++| ......+     ....+++|+.+++++|..+++......+..
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            4455555555544443  2223344555555555552 2222111     122345666666666665555544444445


Q ss_pred             CCCccEEEecCCCCCCcccCC---CCCCCCceEEecccCCC
Q 002129          597 NSSLEILEISGCDSLTYIAGV---QLPPSLKRLKICHCDNI  634 (962)
Q Consensus       597 l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~l  634 (962)
                      +++|++|.+.+|..++...-.   ..+++|++|++++|..+
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            666666666666554332111   23344555555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=0.00015  Score=71.40  Aligned_cols=193  Identities=11%  Similarity=0.004  Sum_probs=110.5

Q ss_pred             HHHHHHHHhhcceeecccccCcc--ccCccCCCCCCccEEEecCCCCccccCCC-CCCCCCcEEEEcCCCCCCCChhhhh
Q 002129          517 KDQQQQLYELLEYLRLSYCEGLV--KLPQSSLSLSSLREIEIYGCRSLVSFPEV-ALPSKLKKIEISSCDALKSLPEAWM  593 (962)
Q Consensus       517 ~~~~~~l~~~L~~L~ls~~~~l~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~  593 (962)
                      ...+....+.++.+|+.+|....  .+...+.++|.|+.|+++.|+.-..|... ....+|++|-+.+.. +.--....+
T Consensus        63 ~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~  141 (418)
T KOG2982|consen   63 VMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSS  141 (418)
T ss_pred             HHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC-CChhhhhhh
Confidence            34566667889999999987654  44455678999999999998766555544 346789999988765 221111222


Q ss_pred             cCCCCCccEEEecCCCCCCcccC-----CCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCcc
Q 002129          594 CDTNSSLEILEISGCDSLTYIAG-----VQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLT  668 (962)
Q Consensus       594 ~~~l~~L~~L~l~~c~~l~~~~~-----~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  668 (962)
                      ...+|.+++|+++.| ++..+..     ....+.++++++..|                                 +...
T Consensus       142 l~~lP~vtelHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c---------------------------------~~~~  187 (418)
T KOG2982|consen  142 LDDLPKVTELHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPC---------------------------------LEQL  187 (418)
T ss_pred             hhcchhhhhhhhccc-hhhhhccccccccccchhhhhhhcCCc---------------------------------HHHH
Confidence            277889999999985 2222111     112233444444333                                 2111


Q ss_pred             ccccCCCccccccccccCCCccCccEEEecCCCCchhh-hhhccCCCCcceEeecCCccccc-cCccccCCCCccEEEcc
Q 002129          669 CIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESI-AEMLDNNTSLEKINISGCGNLQT-LPSGLHNLCQLQEISIA  746 (962)
Q Consensus       669 ~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~  746 (962)
                                ..+...++.+.+++..+.+..|++-+.- ...+..++.+-.|+|+.+++-.- --+.+.++++|..|.++
T Consensus       188 ----------w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~  257 (418)
T KOG2982|consen  188 ----------WLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVS  257 (418)
T ss_pred             ----------HHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeecc
Confidence                      0011111222267777777777654432 23455556666677766543210 01345667777777777


Q ss_pred             cCCCcccC
Q 002129          747 SCGNLVSS  754 (962)
Q Consensus       747 ~~~~l~~~  754 (962)
                      ++|....+
T Consensus       258 ~~Pl~d~l  265 (418)
T KOG2982|consen  258 ENPLSDPL  265 (418)
T ss_pred             CCcccccc
Confidence            77654433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.42  E-value=4.5e-06  Score=91.49  Aligned_cols=101  Identities=25%  Similarity=0.205  Sum_probs=63.4

Q ss_pred             CCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchh-hhccCCCcEEec
Q 002129           88 LQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCAD-MGNLVKLHHLKN  166 (962)
Q Consensus        88 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l  166 (962)
                      .-.|.+-+.++|.+..+-.++.-++.|+.|+|++|+++..- .+..|.+|++|||++ |.+..+|.- ...+. |+.|.+
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhhh-heeeee
Confidence            34566666666666666566666777777777777776653 566777777777777 456666532 23333 677777


Q ss_pred             cCCcccccccccccccccccccceeee
Q 002129          167 SNTKSLEEMPVGIGRLTCLQTLCSFVV  193 (962)
Q Consensus       167 ~~n~~~~~lp~~~~~L~~L~~L~~~~~  193 (962)
                      ++|. +..+ .++.+|++|+.|++.++
T Consensus       240 rnN~-l~tL-~gie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  240 RNNA-LTTL-RGIENLKSLYGLDLSYN  264 (1096)
T ss_pred             cccH-HHhh-hhHHhhhhhhccchhHh
Confidence            7766 4444 45666777776665443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.37  E-value=0.00013  Score=84.70  Aligned_cols=106  Identities=28%  Similarity=0.320  Sum_probs=53.5

Q ss_pred             CCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCc--ccCccccCCCcCcEEEcCCCcccccChhhhcc
Q 002129           58 IQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRIL--ELPDSVGDLRYLRYLNLSGTEIRTLPESVSKL  134 (962)
Q Consensus        58 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L  134 (962)
                      -.+||.|.+.+..     ......|..++ .++.||.|.+++-.+.  ++-.-..++++|+.||+|+++++.+ .+|++|
T Consensus       121 r~nL~~LdI~G~~-----~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~L  194 (699)
T KOG3665|consen  121 RQNLQHLDISGSE-----LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRL  194 (699)
T ss_pred             HHhhhhcCccccc-----hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhcc
Confidence            3455555554422     12334445555 5566666666554433  1222234555666666666666655 456666


Q ss_pred             CCccEEecCCCcchhccc--hhhhccCCCcEEeccCCc
Q 002129          135 YNLHSLLLEDCDRLEKLC--ADMGNLVKLHHLKNSNTK  170 (962)
Q Consensus       135 ~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~n~  170 (962)
                      ++|++|.+++ -.+..-+  ..+..|++|++||+|...
T Consensus       195 knLq~L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  195 KNLQVLSMRN-LEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             ccHHHHhccC-CCCCchhhHHHHhcccCCCeeeccccc
Confidence            6666666554 2222211  234556666666666544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.30  E-value=0.0002  Score=70.55  Aligned_cols=189  Identities=14%  Similarity=0.107  Sum_probs=94.4

Q ss_pred             CCCCcceEeecCCcccc--ccCccccCCCCccEEEcccCCCcccCCCCCCCccccccccccccccc-ccCccccCCCccc
Q 002129          712 NNTSLEKINISGCGNLQ--TLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRL-EALPKGLHNLKSL  788 (962)
Q Consensus       712 ~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~l~~L  788 (962)
                      .++.++.+||.+|.+..  .+...+.++|.|+.|+|+.|+.-..+.....+..+|+.|-+.+-... +.....+..+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            45566666666655432  23344556677777777766433333322245556666666554321 1222344566777


Q ss_pred             ceeecCCCCC----CCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccceeecccCCCCCccCCCCCCCCCCC
Q 002129          789 QELRIGKGVA----LPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSG  864 (962)
Q Consensus       789 ~~L~l~~~~~----l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  864 (962)
                      ++|+++.|..    +..-.....-+.++.++..+|........-  ....-+|++..+.+.+|....+.-.+.       
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e~PlK~~s~ek~-------  219 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCEGPLKTESSEKG-------  219 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeecCcccchhhccc-------
Confidence            7777777631    111111123356666777777654422211  223456777777777653222221111       


Q ss_pred             ccccCCCccceEeeccCCCCcccc--cccccCCCcCeEeccCCCCCccCC
Q 002129          865 TVLPLPASLTYLRIEGFPNLERLT--SSIVDLQNLTGLVLGNCPKLKYFP  912 (962)
Q Consensus       865 ~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l~  912 (962)
                        ...++.+--|.|+. +++.+..  ....+|+.|..|.+.+.|-...+.
T Consensus       220 --se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  220 --SEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             --CCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCccccccc
Confidence              12344444555554 3343332  134567777777777766555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.24  E-value=0.00043  Score=64.55  Aligned_cols=104  Identities=23%  Similarity=0.263  Sum_probs=78.3

Q ss_pred             cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhh-ccCCccEEecCCCcchhccc--hhhhccCCCcE
Q 002129           87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVS-KLYNLHSLLLEDCDRLEKLC--ADMGNLVKLHH  163 (962)
Q Consensus        87 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~-~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~  163 (962)
                      -+.....+||++|.+..+ ..|..+..|.+|.|.+|+|+.+-..+. .+++|++|.+.+| .+..+-  ..+..+++|++
T Consensus        40 ~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   40 TLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             cccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccce
Confidence            345677899999998877 568899999999999999998866554 4567999999984 565553  24677889999


Q ss_pred             EeccCCcccccccc----cccccccccccceeee
Q 002129          164 LKNSNTKSLEEMPV----GIGRLTCLQTLCSFVV  193 (962)
Q Consensus       164 L~l~~n~~~~~lp~----~~~~L~~L~~L~~~~~  193 (962)
                      |.+-+|. ...-+.    -+.++++|+.|+...+
T Consensus       118 Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  118 LTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence            9999998 544432    2677888888865443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.20  E-value=0.00015  Score=84.35  Aligned_cols=112  Identities=23%  Similarity=0.324  Sum_probs=78.1

Q ss_pred             cccccc---cCCcccEEEecCCCCc--ccCccc-cCCCcCcEEEcCCCccc--ccChhhhccCCccEEecCCCcchhccc
Q 002129           81 MLPKLL---KLQSLRVFSLRGYRIL--ELPDSV-GDLRYLRYLNLSGTEIR--TLPESVSKLYNLHSLLLEDCDRLEKLC  152 (962)
Q Consensus        81 ~~~~~~---~l~~L~~L~L~~~~i~--~lp~~~-~~L~~L~~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp  152 (962)
                      +..++.   .-.+|+.||++|...-  .-|..+ ..|+.||.|.+++-.+.  ++-.-..+++||..||+|+ +.+..+ 
T Consensus       111 lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-  188 (699)
T KOG3665|consen  111 LLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL-  188 (699)
T ss_pred             HHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-
Confidence            444444   4568999999886532  224444 56789999999887654  4444567889999999999 557666 


Q ss_pred             hhhhccCCCcEEeccCCccccccc--ccccccccccccceeeecC
Q 002129          153 ADMGNLVKLHHLKNSNTKSLEEMP--VGIGRLTCLQTLCSFVVGK  195 (962)
Q Consensus       153 ~~i~~L~~L~~L~l~~n~~~~~lp--~~~~~L~~L~~L~~~~~~~  195 (962)
                      .++++|++|+.|.+.+-. ...-.  .++.+|++|+.|+++....
T Consensus       189 ~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  189 SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeecccccc
Confidence            789999999999887755 33222  3467788888887765443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.16  E-value=7.1e-05  Score=86.40  Aligned_cols=117  Identities=23%  Similarity=0.327  Sum_probs=76.4

Q ss_pred             cCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccc-cCccccC----ccCCCCCCccEEEecCCCCccccC-
Q 002129          493 DVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYC-EGLVKLP----QSSLSLSSLREIEIYGCRSLVSFP-  566 (962)
Q Consensus       493 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~-~~l~~~~----~~~~~l~~L~~L~l~~~~~l~~~~-  566 (962)
                      .++.|+.|.+.+|..+......    .+...++.|+.|++++| ......+    .....+.+|+.|+++.|..+++.. 
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l  261 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLD----ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL  261 (482)
T ss_pred             hCchhhHhhhcccccCChhhHH----HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence            4677777777777776653311    12233478888888773 3222222    233456888888988887665443 


Q ss_pred             -C-CCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCc
Q 002129          567 -E-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTY  613 (962)
Q Consensus       567 -~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~  613 (962)
                       . ...+++|+.|.+.+|..++.......+..+++|++|++++|..++.
T Consensus       262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d  310 (482)
T KOG1947|consen  262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD  310 (482)
T ss_pred             HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence             1 1236789999988888766655555557788899999999887743

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.94  E-value=0.00037  Score=67.78  Aligned_cols=99  Identities=25%  Similarity=0.295  Sum_probs=70.4

Q ss_pred             cccccccCCcccEEEecCCCCcc-----cCccccCCCcCcEEEcCCCccc----ccC-------hhhhccCCccEEecCC
Q 002129           81 MLPKLLKLQSLRVFSLRGYRILE-----LPDSVGDLRYLRYLNLSGTEIR----TLP-------ESVSKLYNLHSLLLED  144 (962)
Q Consensus        81 ~~~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~Ls~n~i~----~lp-------~~i~~L~~L~~L~L~~  144 (962)
                      +...+..+..+..++||+|.|..     +...+.+-.+|++-+++.-...    ++|       +.+-++++|+..+||.
T Consensus        22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD  101 (388)
T COG5238          22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD  101 (388)
T ss_pred             HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence            33444467888999999999872     4566778889999998865332    333       3456789999999999


Q ss_pred             Ccchhccchh----hhccCCCcEEeccCCccccccccc-cc
Q 002129          145 CDRLEKLCAD----MGNLVKLHHLKNSNTKSLEEMPVG-IG  180 (962)
Q Consensus       145 ~~~~~~lp~~----i~~L~~L~~L~l~~n~~~~~lp~~-~~  180 (962)
                      |-.-...|+.    |++-+.|.||.+++|. ++.+..+ |+
T Consensus       102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rig  141 (388)
T COG5238         102 NAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIG  141 (388)
T ss_pred             cccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHH
Confidence            6554555543    5777899999999998 6655433 44

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.61  E-value=0.00072  Score=65.84  Aligned_cols=86  Identities=21%  Similarity=0.200  Sum_probs=60.1

Q ss_pred             ccccCCCcCcEEEcCCCccc-----ccChhhhccCCccEEecCCCcch----hccch-------hhhccCCCcEEeccCC
Q 002129          106 DSVGDLRYLRYLNLSGTEIR-----TLPESVSKLYNLHSLLLEDCDRL----EKLCA-------DMGNLVKLHHLKNSNT  169 (962)
Q Consensus       106 ~~~~~L~~L~~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~~~~~----~~lp~-------~i~~L~~L~~L~l~~n  169 (962)
                      ..+..+..+..+|||+|.|.     .+...|.+-.+|++.+++. -..    .++|+       .+-++++|+..++|+|
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            33456889999999999986     3455678888999999886 222    23343       3457899999999999


Q ss_pred             ccccccccc----ccccccccccceee
Q 002129          170 KSLEEMPVG----IGRLTCLQTLCSFV  192 (962)
Q Consensus       170 ~~~~~lp~~----~~~L~~L~~L~~~~  192 (962)
                      .+-...|..    |++-+.|.+|.+..
T Consensus       103 Afg~~~~e~L~d~is~~t~l~HL~l~N  129 (388)
T COG5238         103 AFGSEFPEELGDLISSSTDLVHLKLNN  129 (388)
T ss_pred             ccCcccchHHHHHHhcCCCceeEEeec
Confidence            855555543    45556666665443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.59  E-value=0.0013  Score=64.42  Aligned_cols=105  Identities=22%  Similarity=0.218  Sum_probs=53.0

Q ss_pred             cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCC--ccc-ccChhhhccCCccEEecCCCcchhccc--hhhhccCCC
Q 002129           87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGT--EIR-TLPESVSKLYNLHSLLLEDCDRLEKLC--ADMGNLVKL  161 (962)
Q Consensus        87 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n--~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L  161 (962)
                      .+..|..|++.+..++.+ ..|..|++|++|++|.|  ++. .++-...++++|++|++++| .+..+-  .....+.+|
T Consensus        41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENL  118 (260)
T ss_pred             cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcch
Confidence            444555555555555443 34445666666666666  333 33333344466666666663 333211  124455566


Q ss_pred             cEEeccCCcccccccc----cccccccccccceeeec
Q 002129          162 HHLKNSNTKSLEEMPV----GIGRLTCLQTLCSFVVG  194 (962)
Q Consensus       162 ~~L~l~~n~~~~~lp~----~~~~L~~L~~L~~~~~~  194 (962)
                      ..|++.+|. ...+-+    -+.-+++|..|+.+.+.
T Consensus       119 ~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  119 KSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hhhhcccCC-ccccccHHHHHHHHhhhhccccccccC
Confidence            666666665 222221    14556666666554443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.58  E-value=0.0036  Score=58.59  Aligned_cols=88  Identities=23%  Similarity=0.223  Sum_probs=62.9

Q ss_pred             ccccccCCcccEEEecCCCCcccCccc-cCCCcCcEEEcCCCcccccC--hhhhccCCccEEecCCCcchhccch----h
Q 002129           82 LPKLLKLQSLRVFSLRGYRILELPDSV-GDLRYLRYLNLSGTEIRTLP--ESVSKLYNLHSLLLEDCDRLEKLCA----D  154 (962)
Q Consensus        82 ~~~~~~l~~L~~L~L~~~~i~~lp~~~-~~L~~L~~L~Ls~n~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~----~  154 (962)
                      .+.+-+++.|.+|.|.+|+|+.|-+.+ .-+++|..|.|.+|.|.++-  ..+..++.|++|.+-+| .+...+.    -
T Consensus        57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yv  135 (233)
T KOG1644|consen   57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLYV  135 (233)
T ss_pred             cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC-chhcccCceeEE
Confidence            344448888888888888888885555 45567888888888887663  33677788888888874 3443332    2


Q ss_pred             hhccCCCcEEeccCCc
Q 002129          155 MGNLVKLHHLKNSNTK  170 (962)
Q Consensus       155 i~~L~~L~~L~l~~n~  170 (962)
                      +.++++|+.||.....
T Consensus       136 l~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  136 LYKLPSLRTLDFQKVT  151 (233)
T ss_pred             EEecCcceEeehhhhh
Confidence            5788888888887654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.55  E-value=0.00097  Score=38.52  Aligned_cols=19  Identities=47%  Similarity=0.908  Sum_probs=10.1

Q ss_pred             CcEEEcCCCcccccChhhh
Q 002129          114 LRYLNLSGTEIRTLPESVS  132 (962)
Q Consensus       114 L~~L~Ls~n~i~~lp~~i~  132 (962)
                      ||+|||++|+++.+|++|+
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4555555555555554444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.21  E-value=0.00037  Score=68.04  Aligned_cols=99  Identities=21%  Similarity=0.266  Sum_probs=52.9

Q ss_pred             CCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccch--hhhccCCCcEEe
Q 002129           88 LQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCA--DMGNLVKLHHLK  165 (962)
Q Consensus        88 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~  165 (962)
                      +.+.+-|++-||.++.| ....+++.|++|.||-|+|+.+ +.+..+++|+.|+|+. |.+..+-+  .+.+|++|+.|-
T Consensus        18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHh
Confidence            34445555556665554 3345566666666666666655 3355666666666666 33443322  245666666666


Q ss_pred             ccCCccccccccc-----ccccccccccc
Q 002129          166 NSNTKSLEEMPVG-----IGRLTCLQTLC  189 (962)
Q Consensus       166 l~~n~~~~~lp~~-----~~~L~~L~~L~  189 (962)
                      |..|.-.+..+..     +.-|++|++|+
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            6655533333321     44556666664

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.04  E-value=0.0029  Score=36.50  Aligned_cols=22  Identities=27%  Similarity=0.569  Sum_probs=18.9

Q ss_pred             cccEEEecCCCCcccCccccCC
Q 002129           90 SLRVFSLRGYRILELPDSVGDL  111 (962)
Q Consensus        90 ~L~~L~L~~~~i~~lp~~~~~L  111 (962)
                      +|++|||++|+++.+|++|++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            5899999999999999888764

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.83  E-value=0.00096  Score=65.26  Aligned_cols=82  Identities=26%  Similarity=0.270  Sum_probs=68.6

Q ss_pred             cc-cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccCh--hhhccCCccEEecCCCcchhccch-----hhh
Q 002129           85 LL-KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPE--SVSKLYNLHSLLLEDCDRLEKLCA-----DMG  156 (962)
Q Consensus        85 ~~-~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~-----~i~  156 (962)
                      ++ .|+.|+||.|+-|+|+.+ ..+..+++|+.|.|..|.|.++-+  -+.+|++|++|-|..|...+.-+.     .+.
T Consensus        36 ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR  114 (388)
T KOG2123|consen   36 ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR  114 (388)
T ss_pred             HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence            44 899999999999999998 678999999999999999998854  378999999999998766665553     257


Q ss_pred             ccCCCcEEecc
Q 002129          157 NLVKLHHLKNS  167 (962)
Q Consensus       157 ~L~~L~~L~l~  167 (962)
                      -|++|+.||--
T Consensus       115 ~LPnLkKLDnv  125 (388)
T KOG2123|consen  115 VLPNLKKLDNV  125 (388)
T ss_pred             HcccchhccCc
Confidence            78999998743

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.48  E-value=0.047  Score=49.49  Aligned_cols=117  Identities=10%  Similarity=0.238  Sum_probs=56.4

Q ss_pred             cccCCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccChh-
Q 002129           54 DLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPES-  130 (962)
Q Consensus        54 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~~-  130 (962)
                      .|..+++|+.+.+...        ...+....| +++.|+.+.+.++ +..++ ..|.++..|+.+.+.. .+..++.. 
T Consensus         7 ~F~~~~~l~~i~~~~~--------~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~   76 (129)
T PF13306_consen    7 AFYNCSNLESITFPNT--------IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNA   76 (129)
T ss_dssp             TTTT-TT--EEEETST----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTT
T ss_pred             HHhCCCCCCEEEECCC--------eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccc
Confidence            4566777777765431        345666666 7777888888764 66664 3567777788888865 55555543 


Q ss_pred             hhccCCccEEecCCCcchhccch-hhhccCCCcEEeccCCccccccccc-ccccccc
Q 002129          131 VSKLYNLHSLLLEDCDRLEKLCA-DMGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCL  185 (962)
Q Consensus       131 i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L  185 (962)
                      |...++|+.+++.. + +..++. .+.+. +|+.+.+..+  +..++.. |.+.++|
T Consensus        77 F~~~~~l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   77 FSNCTNLKNIDIPS-N-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTT-TTECEEEETT-T--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred             ccccccccccccCc-c-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence            66778888888865 2 445543 35665 7777777653  4445443 5544444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.97  E-value=0.012  Score=57.85  Aligned_cols=85  Identities=24%  Similarity=0.219  Sum_probs=58.6

Q ss_pred             cCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCC--cchhccchhhhccCCCcEEeccCCcccccccccc--
Q 002129          104 LPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDC--DRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGI--  179 (962)
Q Consensus       104 lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~--~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~--  179 (962)
                      +....-....|+.|++.+..++.+ ..+-.|++|+.|+++.|  .....++--...+++|++|++++|+ ++. +..+  
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~p  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRP  111 (260)
T ss_pred             cccccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccch
Confidence            444456667788888888877765 33567899999999997  4455666556677999999999998 554 3333  


Q ss_pred             -ccccccccccee
Q 002129          180 -GRLTCLQTLCSF  191 (962)
Q Consensus       180 -~~L~~L~~L~~~  191 (962)
                       ..+.+|..|+++
T Consensus       112 l~~l~nL~~Ldl~  124 (260)
T KOG2739|consen  112 LKELENLKSLDLF  124 (260)
T ss_pred             hhhhcchhhhhcc
Confidence             344444455443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.94  E-value=0.015  Score=30.98  Aligned_cols=16  Identities=44%  Similarity=0.725  Sum_probs=6.0

Q ss_pred             cCcEEEcCCCcccccC
Q 002129          113 YLRYLNLSGTEIRTLP  128 (962)
Q Consensus       113 ~L~~L~Ls~n~i~~lp  128 (962)
                      +|+.|+|++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4455555555544443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.28  E-value=0.01  Score=55.84  Aligned_cols=90  Identities=18%  Similarity=0.280  Sum_probs=64.2

Q ss_pred             CccceEeecCchhhhHHHHhccccccccCccceeecccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcccc
Q 002129          809 TNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLT  888 (962)
Q Consensus       809 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~  888 (962)
                      ..++.++.+++.+.....    ..+.+++.++.|.+.+|... ....-+..       -...++|+.|++++|+++++--
T Consensus       101 ~~IeaVDAsds~I~~eGl----e~L~~l~~i~~l~l~~ck~~-dD~~L~~l-------~~~~~~L~~L~lsgC~rIT~~G  168 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGL----EHLRDLRSIKSLSLANCKYF-DDWCLERL-------GGLAPSLQDLDLSGCPRITDGG  168 (221)
T ss_pred             ceEEEEecCCchHHHHHH----HHHhccchhhhheeccccch-hhHHHHHh-------cccccchheeeccCCCeechhH
Confidence            457888999999888877    57899999999999997422 22111110       1256889999999998888743


Q ss_pred             -cccccCCCcCeEeccCCCCCcc
Q 002129          889 -SSIVDLQNLTGLVLGNCPKLKY  910 (962)
Q Consensus       889 -~~~~~l~~L~~L~l~~c~~l~~  910 (962)
                       .++..|++|+.|.+.+.+....
T Consensus       169 L~~L~~lknLr~L~l~~l~~v~~  191 (221)
T KOG3864|consen  169 LACLLKLKNLRRLHLYDLPYVAN  191 (221)
T ss_pred             HHHHHHhhhhHHHHhcCchhhhc
Confidence             4567788888888888554433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.02  E-value=0.0021  Score=61.18  Aligned_cols=86  Identities=15%  Similarity=0.191  Sum_probs=70.9

Q ss_pred             ccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcE
Q 002129           84 KLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHH  163 (962)
Q Consensus        84 ~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~  163 (962)
                      ++..++..++||++.|++..+-..|+.++.|..||++.|.|..+|+.++.+..++.+++.. +.....|.+++.++.++.
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKK  115 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcch
Confidence            4456778888888888887777778888888888888888888888888888888888877 567778888888888888


Q ss_pred             EeccCCc
Q 002129          164 LKNSNTK  170 (962)
Q Consensus       164 L~l~~n~  170 (962)
                      +++-++.
T Consensus       116 ~e~k~~~  122 (326)
T KOG0473|consen  116 NEQKKTE  122 (326)
T ss_pred             hhhccCc
Confidence            8888776

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.01  E-value=0.12  Score=46.81  Aligned_cols=101  Identities=12%  Similarity=0.269  Sum_probs=62.1

Q ss_pred             cccccc-cCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccChh-hhccCCccEEecCCCcchhccch-hhh
Q 002129           81 MLPKLL-KLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCA-DMG  156 (962)
Q Consensus        81 ~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~-~i~  156 (962)
                      +++..| ++++|+.+.+.. .+..++ .+|.++.+|+.+.+.++ +..++.. |....+|+.+.+..  ....++. .+.
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~   78 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFS   78 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccc
Confidence            456677 888999999985 577774 56889989999999885 8888754 88888999999975  3555554 467


Q ss_pred             ccCCCcEEeccCCccccccccc-cccccccccc
Q 002129          157 NLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTL  188 (962)
Q Consensus       157 ~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L  188 (962)
                      .+++|+.+++..+  +..++.. +.+. +|+.+
T Consensus        79 ~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i  108 (129)
T PF13306_consen   79 NCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEI  108 (129)
T ss_dssp             T-TTECEEEETTT---BEEHTTTTTT--T--EE
T ss_pred             ccccccccccCcc--ccEEchhhhcCC-CceEE
Confidence            7999999999765  4555544 6665 66655

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.99  E-value=0.037  Score=29.48  Aligned_cols=17  Identities=35%  Similarity=0.641  Sum_probs=11.5

Q ss_pred             CcccEEEecCCCCcccC
Q 002129           89 QSLRVFSLRGYRILELP  105 (962)
Q Consensus        89 ~~L~~L~L~~~~i~~lp  105 (962)
                      ++|++|++++|+++++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            47999999999998876

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.49  E-value=0.0035  Score=59.76  Aligned_cols=88  Identities=16%  Similarity=0.193  Sum_probs=77.6

Q ss_pred             CcccC-ccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccc
Q 002129          101 ILELP-DSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGI  179 (962)
Q Consensus       101 i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~  179 (962)
                      ++++| ..+.....-++||++.|++..+-..|+.++.|..||++. +.+..+|+.++.+..++++++..|. ....|..+
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~  107 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ  107 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence            34555 356778889999999999999988899999999999998 6799999999999999999999888 88999999


Q ss_pred             cccccccccce
Q 002129          180 GRLTCLQTLCS  190 (962)
Q Consensus       180 ~~L~~L~~L~~  190 (962)
                      ++++.++.++.
T Consensus       108 ~k~~~~k~~e~  118 (326)
T KOG0473|consen  108 KKEPHPKKNEQ  118 (326)
T ss_pred             cccCCcchhhh
Confidence            99999998854

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.90  E-value=0.016  Score=54.50  Aligned_cols=91  Identities=18%  Similarity=0.223  Sum_probs=62.6

Q ss_pred             cCCCCCCCcccccccccccccccccCccccCCCcccceeecCCCCCCCCCCC---CCCCCccceEeecCchhhhHHHHhc
Q 002129          753 SSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEE---DGLPTNLHVLLINGNMEIWKSMIER  829 (962)
Q Consensus       753 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~  829 (962)
                      +.|....+-..++.++-+++.....--..+..++.++.|.+..|..+.+..-   .+..++|+.|+|++|+.++....  
T Consensus        92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL--  169 (221)
T KOG3864|consen   92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL--  169 (221)
T ss_pred             cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH--
Confidence            3444333434677777777775544445667788888888888877655332   24568899999999987776554  


Q ss_pred             cccccccCccceeeccc
Q 002129          830 GRGFHRFSSLRQLTIMN  846 (962)
Q Consensus       830 ~~~~~~l~~L~~L~l~~  846 (962)
                       ..+..+++|+.|.+.+
T Consensus       170 -~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  170 -ACLLKLKNLRRLHLYD  185 (221)
T ss_pred             -HHHHHhhhhHHHHhcC
Confidence             4577788888888877

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.19  E-value=0.13  Score=31.15  Aligned_cols=20  Identities=40%  Similarity=0.639  Sum_probs=15.1

Q ss_pred             CCcCcEEEcCCCcccccChh
Q 002129          111 LRYLRYLNLSGTEIRTLPES  130 (962)
Q Consensus       111 L~~L~~L~Ls~n~i~~lp~~  130 (962)
                      |++|++|+|++|+|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            45778888888888888765

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.19  E-value=0.13  Score=31.15  Aligned_cols=20  Identities=40%  Similarity=0.639  Sum_probs=15.1

Q ss_pred             CCcCcEEEcCCCcccccChh
Q 002129          111 LRYLRYLNLSGTEIRTLPES  130 (962)
Q Consensus       111 L~~L~~L~Ls~n~i~~lp~~  130 (962)
                      |++|++|+|++|+|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            45778888888888888765

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.88  E-value=0.44  Score=28.70  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=18.1

Q ss_pred             CCcccEEEecCCCCcccCccc
Q 002129           88 LQSLRVFSLRGYRILELPDSV  108 (962)
Q Consensus        88 l~~L~~L~L~~~~i~~lp~~~  108 (962)
                      +++|++|+|++|.|+.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            468999999999999998653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.88  E-value=0.44  Score=28.70  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=18.1

Q ss_pred             CCcccEEEecCCCCcccCccc
Q 002129           88 LQSLRVFSLRGYRILELPDSV  108 (962)
Q Consensus        88 l~~L~~L~L~~~~i~~lp~~~  108 (962)
                      +++|++|+|++|.|+.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            468999999999999998653

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=80.19  E-value=1.4  Score=26.54  Aligned_cols=17  Identities=35%  Similarity=0.526  Sum_probs=12.0

Q ss_pred             CCcCcEEEcCCCccccc
Q 002129          111 LRYLRYLNLSGTEIRTL  127 (962)
Q Consensus       111 L~~L~~L~Ls~n~i~~l  127 (962)
                      +++|++|+|++|+|+.+
T Consensus         1 L~~L~~L~L~~NkI~~I   17 (26)
T smart00365        1 LTNLEELDLSQNKIKKI   17 (26)
T ss_pred             CCccCEEECCCCcccee
Confidence            45777788888777654

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=80.18  E-value=1.1  Score=26.78  Aligned_cols=17  Identities=41%  Similarity=0.702  Sum_probs=13.1

Q ss_pred             cCcEEEcCCCcccccCh
Q 002129          113 YLRYLNLSGTEIRTLPE  129 (962)
Q Consensus       113 ~L~~L~Ls~n~i~~lp~  129 (962)
                      +|++|++++|+++.+|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            57778888888887776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	962
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	4e-06
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-04
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 89.2 bits (222), Expect = 3e-19
 Identities = 28/109 (25%), Positives = 45/109 (41%)

Query: 80  SMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHS 139
               +   L +L+   L    I  LP S+ +L+ L+ L +  + +  L  ++  L  L  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233

Query: 140 LLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188
           L L  C  L       G    L  L   +  +L  +P+ I RLT L+ L
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.7 bits (218), Expect = 9e-19
 Identities = 69/387 (17%), Positives = 106/387 (27%), Gaps = 105/387 (27%)

Query: 527 LEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALK 586
            E L       L                +     S          S   +IE  +  ALK
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRTGRALK 69

Query: 587 SLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCS 646
           +  +     T      LE+     L      Q P    RL                    
Sbjct: 70  ATADLLEDATQPGRVALELRSV-PLP-----QFPDQAFRLS------------------- 104

Query: 647 SGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESI 706
                    L+H+ I +   L       ELP       +      L+ L +     L ++
Sbjct: 105 --------HLQHMTIDAA-GLM------ELPD-----TMQQFA-GLETLTLARN-PLRAL 142

Query: 707 AEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAM 766
              + +   L +++I  C  L  LP  L +     E        LV+          L  
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEH-----QGLVN----------LQS 187

Query: 767 LAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSM 826
           L +     + +LP  + NL++L+ L+I        L    L   +H L            
Sbjct: 188 LRLEWTG-IRSLPASIANLQNLKSLKIRNS----PLSA--LGPAIHHL------------ 228

Query: 827 IERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLER 886
                       L +L +  C   + ++PP                L  L ++   NL  
Sbjct: 229 ----------PKLEELDLRGCTA-LRNYPP--------IFGGRA-PLKRLILKDCSNLLT 268

Query: 887 LTSSIVDLQNLTGLVLGNCPKLKYFPE 913
           L   I  L  L  L L  C  L   P 
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.8 bits (213), Expect = 3e-18
 Identities = 62/342 (18%), Positives = 120/342 (35%), Gaps = 70/342 (20%)

Query: 462 PLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQ 521
           P    L + +    + + + +             +   +E R+   L++     E   Q 
Sbjct: 27  PYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGRALKATADLLEDATQP 81

Query: 522 QLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFP-EVALPSKLKKIEIS 580
                   L L     L + P  +  LS L+ + I     L+  P  +   + L+ + ++
Sbjct: 82  GR----VALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLA 135

Query: 581 SCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLK----ICHCDNIRT 636
               L++LP + +    + L  L I  C  LT     +LP  L             N+++
Sbjct: 136 RNP-LRALPAS-IASL-NRLRELSIRACPELT-----ELPEPLASTDASGEHQGLVNLQS 187

Query: 637 LTVEEGIQCSSGRRYTSSL-----LEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPS 691
           L     ++ +  R   +S+     L+ L+I +   L+       L   +  L        
Sbjct: 188 LR----LEWTGIRSLPASIANLQNLKSLKIRNS-PLS------ALGPAIHHLP------K 230

Query: 692 LKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNL 751
           L+ L + GC+ L +   +      L+++ +  C NL TLP  +H L QL++         
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK--------- 281

Query: 752 VSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRI 793
                          L +  C  L  LP  +  L +   + +
Sbjct: 282 ---------------LDLRGCVNLSRLPSLIAQLPANCIILV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.8 bits (200), Expect = 2e-16
 Identities = 49/254 (19%), Positives = 90/254 (35%), Gaps = 35/254 (13%)

Query: 86  LKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDC 145
                     LR   + + PD    L +L+++ +    +  LP+++ +   L +L L   
Sbjct: 78  ATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN 137

Query: 146 DRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELK 205
             L  L A + +L +L  L       L E+P  +                     L+ L+
Sbjct: 138 -PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL-------VNLQSLR 189

Query: 206 L----LTQLRGTLCISNLENVKHIVDAEDAQLDRK-------ENLKELWLRWTLYGSYSR 254
           L    +  L     I+NL+N+K +    ++ L            L+EL LR     +  R
Sbjct: 190 LEWTGIRSL--PASIANLQNLKSL-KIRNSPLSALGPAIHHLPKLEELDLRGC---TALR 243

Query: 255 EAETEMGVLDMLKPHTNLEQFCIKGYGGMK-FPTWLGDSSFSKLVTLKFKNCDMCTALP- 312
                 G          L++  +K    +   P  +     ++L  L  + C   + LP 
Sbjct: 244 NYPPIFGGR------APLKRLILKDCSNLLTLPLDIH--RLTQLEKLDLRGCVNLSRLPS 295

Query: 313 SVGQLPSLKHLTVR 326
            + QLP+   + V 
Sbjct: 296 LIAQLPANCIILVP 309

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.7 bits (148), Expect = 6e-10
 Identities = 43/260 (16%), Positives = 75/260 (28%), Gaps = 45/260 (17%)

Query: 703 LESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQ-------------------EI 743
           + S      +++  E +   G   L+     L    +                     +I
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 744 SIASCGNLVSSPE--GGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPS 801
              +   L ++ +            L + +   L   P     L  LQ + I     L  
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTID-AAGLME 118

Query: 802 L-EEDGLPTNLHVLLINGNM------EIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSF 854
           L +       L  L +  N        I              + LR+L+I  C  ++   
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRALPASIAS-----------LNRLRELSIRAC-PELTEL 166

Query: 855 PPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEK 914
           P       +        +L  LR+E    +  L +SI +LQNL  L + N   L      
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEW-TGIRSLPASIANLQNLKSLKIRNS-PLSALGPA 224

Query: 915 -GLPSSLLQLSINRCPLIEE 933
                 L +L +  C  +  
Sbjct: 225 IHHLPKLEELDLRGCTALRN 244

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 51/321 (15%), Positives = 86/321 (26%), Gaps = 72/321 (22%)

Query: 126 TLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCL 185
           +            +L  +    L      +    + ++   +   S              
Sbjct: 3   SSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNP 58

Query: 186 QTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKEN-LKELWL 244
           Q               R  + L      L  +               L+ +   L +   
Sbjct: 59  QIE------------TRTGRALKATADLLEDATQPGRVA--------LELRSVPLPQFP- 97

Query: 245 RWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKN 304
                         +   L      ++L+   I   G M+ P  +    F+ L TL    
Sbjct: 98  -------------DQAFRL------SHLQHMTIDAAGLMELPDTMQ--QFAGLETLTLAR 136

Query: 305 CDMCTALP-SVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWED 363
             +  ALP S+  L  L+ L++R   ++  L       D+      L  L+   L     
Sbjct: 137 NPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL----- 190

Query: 364 SIPHGSSQGVERFP----KLRELRIL--RCSKLKGTFPE---HLPALEMLVIEGC---EE 411
                   G+   P     L+ L+ L  R S L         HLP LE L + GC     
Sbjct: 191 -----EWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRN 244

Query: 412 LLVSVSSLPALCKFIISGCKK 432
                     L + I+  C  
Sbjct: 245 YPPIFGGRAPLKRLILKDCSN 265

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 79.1 bits (194), Expect = 4e-15
 Identities = 113/756 (14%), Positives = 213/756 (28%), Gaps = 256/756 (33%)

Query: 77  LAPSMLPKLLK-------LQSLR-VFSLRGYR-ILELPDSVGDLRYLRYLNLSGTEIRTL 127
           +        +            + + S      I+   D+V     L +       + + 
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT------LLSK 74

Query: 128 PESVSKLYNLHSLLLEDCDRLEKLCADMGNLV-KLHHLKNSNTKSLEEMPVGIGRLTCLQ 186
            E + + +      +E+  R      +   L+  +         S+              
Sbjct: 75  QEEMVQKF------VEEVLR-----INYKFLMSPIK--TEQRQPSMMT------------ 109

Query: 187 TLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKEL---- 242
                             ++  + R  L   N    K+ V      L  ++ L EL    
Sbjct: 110 ------------------RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 243 WLRWTLYGSYSREAETEMG-------VLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFS 295
            +   + G         +         LD+   +    +   K +       W       
Sbjct: 152 NV--LIDG---------VLGSGKTWVALDVCLSYKVQCKMDFKIF-------W------- 186

Query: 296 KLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFY-GDDSPIPFPRLETLR 354
               L  KNC+    +  +  L  L +          ++   +    D          LR
Sbjct: 187 ----LNLKNCNSPETV--LEMLQKLLY----------QIDPNWTSRSDHSSNIK----LR 226

Query: 355 FEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLV 414
              +Q                     ELR L  SK    +   L     LV       L+
Sbjct: 227 IHSIQA--------------------ELRRLLKSKP---YENCL-----LV-------LL 251

Query: 415 SVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELI 474
           +V +  A   F +  CK ++    T           R      FL+      +      +
Sbjct: 252 NVQNAKAWNAFNL-SCKILL---TT-----------RFKQVTDFLSAATTTHISLDHHSM 296

Query: 475 LSTKEQTYIWKSHDGLLQDV--CSLKSL--EIRSC-PKLQSLVAEEEKDQQQQLYELLEY 529
             T ++         LL     C  + L  E+ +  P+  S++AE  +D         + 
Sbjct: 297 TLTPDEV------KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT----WDN 346

Query: 530 LRLSYCEGLVKLPQSSLSLSSLREIEIYGC-RSLVSFPE-VALPSKLKKIEISSCDALKS 587
            +   C+ L  + +S  SL+ L   E       L  FP    +P+ L  + +   D +KS
Sbjct: 347 WKHVNCDKLTTIIES--SLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--LSLIWFDVIKS 402

Query: 588 LPEAWMCD-TNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCS 646
                +      SL  +E    +S   I  + L      LK    +N   L         
Sbjct: 403 DVMVVVNKLHKYSL--VEKQPKESTISIPSIYL-----ELK-VKLENEYAL--------- 445

Query: 647 SGRRYTSSLLEHLEIYSCPSLTCIFSKNELP----------------ATLESLEVGNLPP 690
              R   S+++H  I         F  ++L                   +E  E   L  
Sbjct: 446 --HR---SIVDHYNIPKT------FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 691 SLKLLLVWGCSKLE-------SIAEMLDNNTSLEK----INISGCGNLQTLPSGLHNLCQ 739
            + L   +   K+        +   +L+    L+     I  +     + + + L  L +
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554

Query: 740 LQEISIASCGNLVSSPEGGLPCAKLAML----AIYN 771
           ++E       NL+ S    L   ++A++    AI+ 
Sbjct: 555 IEE-------NLICSKYTDL--LRIALMAEDEAIFE 581

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 2e-08
 Identities = 89/585 (15%), Positives = 174/585 (29%), Gaps = 163/585 (27%)

Query: 17  Y-FTMEYTSEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVI--LSNSK 73
           Y F M       +Q        ++      Y+  Q F   Y++  L+ +L +   L   +
Sbjct: 91  YKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELR 148

Query: 74  PGYLAPSMLPKLL--------KLQSLRVFSLRGYRILE-LPDSVGDLRYLRYLNLSG-TE 123
           P          +L        K   + +     Y++   +   +    +  +LNL     
Sbjct: 149 PA-------KNVLIDGVLGSGK-TWVALDVCLSYKVQCKMDFKI----F--WLNLKNCNS 194

Query: 124 IRTLPESVSKLY-----NLHSLLLEDCD---RLEKLCADMGNLVKLHHLKNS-------- 167
             T+ E + KL      N  S      +   R+  + A++  L+K    +N         
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 168 NTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHI-V 226
           N K+     +      C + L                 L T+ +      +     HI +
Sbjct: 255 NAKAWNAFNLS-----C-KIL-----------------LTTRFKQVTDFLSAATTTHISL 291

Query: 227 DAEDAQLDRKENLKELWLRW--TLYGSYSREAET----EMGVL-DMLKPHTNLEQFCIKG 279
           D     L   E    L L++         RE  T     + ++ + ++          K 
Sbjct: 292 DHHSMTLTPDEVK-SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKH 349

Query: 280 YGGMKFPTWLGDSSFSKLVTLKFKNC-DMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEF 338
               K  T + +SS + L   +++   D  +  P                          
Sbjct: 350 VNCDKLTTII-ESSLNVLEPAEYRKMFDRLSVFP-------------------------- 382

Query: 339 YGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERF-PKLRELRILRCSKLKGTFPEH 397
               + IP   L  +       W D I       V     KL +  ++     + T    
Sbjct: 383 --PSAHIPTILLSLI-------WFDVIK----SDVMVVVNKLHKYSLVEKQPKESTI--S 427

Query: 398 LPALEMLVIEGCEELLVSVSSLPALCKFII---SGCKKVVWESAT------------G-H 441
           +P++ +       EL V + +  AL + I+   +  K    +               G H
Sbjct: 428 IPSIYL-------ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 442 LGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLE 501
           L +            VFL          LE+ I   +  +  W +   +L  +  LK   
Sbjct: 481 LKNIEHPERMTLFRMVFL------DFRFLEQKI---RHDSTAWNASGSILNTLQQLK--- 528

Query: 502 IRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSL 546
                  +  + + +   ++ +  +L++L     E L+    + L
Sbjct: 529 -----FYKPYICDNDPKYERLVNAILDFLP-KIEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 6e-08
 Identities = 83/624 (13%), Positives = 183/624 (29%), Gaps = 185/624 (29%)

Query: 339 YGDDSPIPFPRL-ETLRFEDLQEWEDSIPHGSSQGVERF-----PKLRELRILRCSKLKG 392
           Y D   +      +    +D+Q+   SI   S + ++            LR+      K 
Sbjct: 18  YKDILSVFEDAFVDNFDCKDVQDMPKSIL--SKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75

Query: 393 TFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRD 452
                         E  ++ +  V  L    KF++S  K    E     + ++  +  RD
Sbjct: 76  E-------------EMVQKFVEEV--LRINYKFLMSPIKT---EQRQPSMMTRMYIEQRD 117

Query: 453 ---TSNQVFLAGPL--KPQLPKLEELILSTKEQTYIW--------KSHDGLLQDVCSLKS 499
                NQVF    +       KL + +L  +    +         K+   +  DVC    
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT--WVALDVCLSYK 175

Query: 500 LE-----------IRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSL 548
           ++           +++C   ++++     +  Q+L   ++    S  +    +     S+
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVL-----EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 549 SS-LREI---EIY---------------------GCRSLV--SFPEVA--LPSKLKKIEI 579
            + LR +   + Y                      C+ L+   F +V   L +      I
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT-HI 289

Query: 580 SSCDALKSLPEAWMCDTNSSLEIL-EISGCDSLTYIAGVQLPPS--------------LK 624
           S      +L             +L +   C          LP                  
Sbjct: 290 SLDHHSMTLTPD------EVKSLLLKYLDCRPQ------DLPREVLTTNPRRLSIIAESI 337

Query: 625 RLKICHCDNIRTLT---VEEGIQCSSGRRYTSSLLEHLE------IYSCPSLTCIFSKNE 675
           R  +   DN + +    +   I+ S         L  LE      ++    L+ +F  + 
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESS---------LNVLEPAEYRKMFD--RLS-VFPPSA 385

Query: 676 LPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLD--NNTSLEKINISGCGNLQTLPS- 732
                      ++P  L L L+W       +  +++  +  SL  +      +  ++PS 
Sbjct: 386 -----------HIPTIL-LSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSI 431

Query: 733 ------------GLHNLC--QLQEISIASCGNLVSSPEGGLPCAKLA--MLAIYNCKRLE 776
                        LH                +L+         + +   +  I + +R+ 
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 777 ALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLIN--GNMEIWKSMI-ERGRGF 833
                  + + L+     K      +  D    N    ++N    ++ +K  I +    +
Sbjct: 492 LFRMVFLDFRFLE----QK------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 834 HRFSSLRQLT--IMNCDDDMVSFP 855
            R   +  +   +   +++++   
Sbjct: 542 ERL--VNAILDFLPKIEENLICSK 563

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 6e-05
 Identities = 49/326 (15%), Positives = 86/326 (26%), Gaps = 121/326 (37%)

Query: 18  FTMEYTSEVNKQQRFSRYL----------------RHLSYI----RGDYDGVQRFGDLYD 57
            T +    +       +YL                R LS I    R        +    +
Sbjct: 298 LTPDEVKSL-----LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW-KHVN 351

Query: 58  IQHLRTFLPVILSNSKPG-----YLAPSMLP-------KLLK--------------LQSL 91
              L T +   L+  +P      +   S+ P        LL               +  L
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 92  RVFSL----RGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLE---- 143
             +SL         + +P       YL                +   Y LH  +++    
Sbjct: 412 HKYSLVEKQPKESTISIPS-----IYLELK-----------VKLENEYALHRSIVDHYNI 455

Query: 144 ----DCDRLEKLCADM------GNLVKLHHLKN-SNTKSLEEMPVGIGRLTCLQTLCSFV 192
               D D L     D       G     HHLKN  + + +                  F+
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIG-----HHLKNIEHPERMTLFR------MVFLDF-RFL 503

Query: 193 VGKDSGSGLRELKLLTQLRGTLC--ISNLENVK-HIVDAEDAQLDRKENLKELWLRWTLY 249
             K     +R         G++   +  L+  K +I D  D + +R  N           
Sbjct: 504 EQK-----IRHDSTAWNASGSILNTLQQLKFYKPYICD-NDPKYERLVN---------AI 548

Query: 250 GSYSREAETEMGVLDMLKPHTNLEQF 275
             +  + E  +    +   +T+L + 
Sbjct: 549 LDFLPKIEENL----ICSKYTDLLRI 570

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.9 bits (192), Expect = 9e-15
 Identities = 110/651 (16%), Positives = 204/651 (31%), Gaps = 85/651 (13%)

Query: 52  FGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDL 111
              L   + L       LS +    +  S  P L +LQ L + S      ++  ++  +L
Sbjct: 20  PQVLNTTERLL------LSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID-KEAFRNL 72

Query: 112 RYLRYLNLSGTEIRTLPESV-SKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLK----- 165
             LR L+L  ++I  L       L++L  L L  C  L       G    L  L      
Sbjct: 73  PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLS 131

Query: 166 NSNTKSLEEMPVGIGRLTCLQTL----CSF-VVGKDSGSGLRELKLLTQLRGTLCISNLE 220
            +  +SL   P   G+L  L+++        +V +     L+   L           +L 
Sbjct: 132 KNQIRSLYLHPS-FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF--------FSLA 182

Query: 221 NVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGY 280
                              + + L   L  S +       G        +      +  +
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLE-ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241

Query: 281 GGMKFP-----TWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRL- 334
                           ++F+ L     ++ D+     S G + SL       +  +K L 
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL-----SHGFVFSLNSRVFETLKDLKVLN 296

Query: 335 ----------GSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRI 384
                        FYG         L+ L           +   +  G    PK+  + +
Sbjct: 297 LAYNKINKIADEAFYG------LDNLQVLNLSYNL--LGELYSSNFYG---LPKVAYIDL 345

Query: 385 LRC--SKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHL 442
            +   + ++    + L  L+ L +      L ++  +P++    +SG K     +     
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNA--LTTIHFIPSIPDIFLSGNK---LVTLPKIN 400

Query: 443 GSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEI 502
            + N +   +   +         ++P L+ LIL+    +    S D    +  SL+ L +
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC--SGDQTPSENPSLEQLFL 458

Query: 503 RSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLS-LSSLREIEIYGCRS 561
                LQ     E      +    L+ L L++   L  LP    S L++LR + +   R 
Sbjct: 459 GEN-MLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNR- 515

Query: 562 LVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPP 621
           L       LP+ L+ ++IS  + L +       D   SL +L+I+    +          
Sbjct: 516 LTVLSHNDLPANLEILDISR-NQLLAPNP----DVFVSLSVLDITHNKFICECELSTFIN 570

Query: 622 SLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFS 672
            L    +              I C     ++   L  L    C     + S
Sbjct: 571 WLNHTNVTIAGP------PADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKS 615

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 9e-08
 Identities = 75/481 (15%), Positives = 144/481 (29%), Gaps = 79/481 (16%)

Query: 377 PKLRELRI----LRCSKLKGTFPEHLPALEMLVIEGCE----ELLVSVSSLPALCKFIIS 428
             L ELR+    L  + LK  +  +L AL  L +   +     L  S   L +L     S
Sbjct: 97  FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 429 GCK-KVVWESATGHLGSQNSVVCRDTSNQ-------VFLAGPLKPQLPKLEELILSTKEQ 480
             +  +V E     L  +        +N         +       +   LE L +S    
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216

Query: 481 TYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYEL-------LEYLRLS 533
           T            +   ++  +     +          +              + +L LS
Sbjct: 217 TVDIT--GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274

Query: 534 YCEGLVKLPQSSLS-LSSLREIEIYGCRSLVSFPEVALP--SKLKKIEISSCDALKSLPE 590
           +   +  L       L  L+ + +   + +    + A      L+ + +S    L  L  
Sbjct: 275 HGF-VFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNL-LGELYS 331

Query: 591 AWMCDTNSSLEILEISGCDSLTYIAGVQLP--PSLKRLKICHCDNIRTLTVEEGIQCSSG 648
           +        +  +++     +  I          L+ L +        LT          
Sbjct: 332 SNFYG-LPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA----LT---------- 375

Query: 649 RRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLL-LVWGCSKLESIA 707
                       I+  PS+  IF       TL  +       +  L+ L     +   I 
Sbjct: 376 -----------TIHFIPSIPDIFLSGNKLVTLPKI-----NLTANLIHLSENRLENLDIL 419

Query: 708 EMLDNNTSLEKINISGCGNLQTLPSG--LHNLCQLQEISIASCGNLVSSPEGGLP----- 760
             L     L+ + ++      +            L+++ +     L  + E  L      
Sbjct: 420 YFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETELCWDVFE 477

Query: 761 -CAKLAMLAIYNCKRLEALPKG-LHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLING 818
             + L +L + +   L +LP G   +L +L+ L +     L  L  + LP NL +L I+ 
Sbjct: 478 GLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLN-SNRLTVLSHNDLPANLEILDISR 535

Query: 819 N 819
           N
Sbjct: 536 N 536

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 71.1 bits (174), Expect = 1e-12
 Identities = 82/534 (15%), Positives = 153/534 (28%), Gaps = 118/534 (22%)

Query: 347 FPRLETL------RFEDL----QEWEDSIPHGSSQGVERFPKLRELRILRCS---KLKGT 393
           FP++ ++       F D       W   +          +  L E+R+ R          
Sbjct: 65  FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124

Query: 394 FPEHLPALEMLVIEGCEE-----LLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSV 448
             +     ++LV+  CE      L    ++   L +  +                     
Sbjct: 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD----------------- 167

Query: 449 VCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKL 508
              D S               L  L +S              +     L+ L +  CP L
Sbjct: 168 -VDDVSGHWLSH--FPDTYTSLVSLNIS---------CLASEVSFSA-LERL-VTRCPNL 213

Query: 509 QSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEV 568
           +SL                   +L+    L KL         L E+   G  + V     
Sbjct: 214 KSL-------------------KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY 254

Query: 569 ALPSKLKKIEISSCDALKSLPEAW---------MCDTNSSLEILEISGCDSLTY--IAGV 617
           +  S      +S C  L+ L   W         +    S L  L +S     +Y  +  +
Sbjct: 255 SGLSVA----LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLL 310

Query: 618 QLPPSLKRLKIC-------------HCDNIRTLTVE--EGIQCSSGRRYTSSLLEHLEIY 662
              P L+RL +               C ++R L V   E          T   L  +   
Sbjct: 311 CQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV-SM 369

Query: 663 SCPSLTCIFSKN---------ELPATLESLEVGNLPPSLKLLLVWGCSKL--ESIAEMLD 711
            CP L  +              +     ++    L         +   +        +++
Sbjct: 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE 429

Query: 712 NNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLAMLAIY 770
           +   L ++++SG    +          +++ +S+A  G+           C  L  L I 
Sbjct: 430 HCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489

Query: 771 NCKRL-EALPKGLHNLKSLQELRIGK----GVALPSLEEDGLPTNLHVLLINGN 819
           +C    +AL      L++++ L +        A   L +  +P  L+V +I+  
Sbjct: 490 DCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ-KMP-KLNVEVIDER 541

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 55.3 bits (133), Expect = 7e-08
 Identities = 55/352 (15%), Positives = 113/352 (32%), Gaps = 43/352 (12%)

Query: 591 AWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRR 650
           +W          + I  C +++    ++  P ++ +++    +         +       
Sbjct: 36  SWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF----NLVPDGWGG 91

Query: 651 YTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE-VGNLPPSLKLLLVWGCSKL--ESIA 707
           Y    +E +   S   L  I  K  +  T + LE +     + K+L++  C     + +A
Sbjct: 92  YVYPWIEAM-SSSYTWLEEIRLKR-MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA 149

Query: 708 EMLDNNTSLEKINISGCGNLQTLPSGLHNLC----QLQEISIASCGNLVSSPEGGLP--- 760
            +     +L+++++            L +       L  ++I+   + VS     L    
Sbjct: 150 AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS--FSALERLV 207

Query: 761 --CAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDG-----LPTNLHV 813
             C  L  L +     LE L   L     L+EL  G   A    +        L     +
Sbjct: 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267

Query: 814 LLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNC---DDDMVSFPPKA------------ 858
             ++G  +   + +     +   S L  L +        D+V    +             
Sbjct: 268 RCLSGFWDAVPAYLP--AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI 325

Query: 859 DDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKY 910
           +D G   +      L  LR+          +  +  Q L  + +G CPKL+ 
Sbjct: 326 EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG-CPKLES 376

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 55.3 bits (133), Expect = 8e-08
 Identities = 39/283 (13%), Positives = 83/283 (29%), Gaps = 55/283 (19%)

Query: 545 SLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSC----------DALKSLPEAWM- 593
            +     R++ I  C ++     +    K++ +E+             D        W+ 
Sbjct: 39  EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIE 98

Query: 594 --CDTNSSLEILEISGC----DSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSS 647
               + + LE + +       D L  IA  +   + K L +  C+   T  +        
Sbjct: 99  AMSSSYTWLEEIRLKRMVVTDDCLELIA--KSFKNFKVLVLSSCEGFSTDGLAAIAATCR 156

Query: 648 GRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESL-EVGNLPPSLKLLLVWGCSKL--- 703
                   L+ L++            +    +   L    +   SL  L +   +     
Sbjct: 157 -------NLKELDLRES---------DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF 200

Query: 704 ESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAK 763
            ++  ++    +L+ + ++    L+ L + L    QL+E+        V           
Sbjct: 201 SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP-----DVYS 255

Query: 764 LAMLAIYNCKRL-----------EALPKGLHNLKSLQELRIGK 795
              +A+  CK L             LP        L  L +  
Sbjct: 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSY 298

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.8 bits (171), Expect = 2e-12
 Identities = 87/550 (15%), Positives = 177/550 (32%), Gaps = 96/550 (17%)

Query: 85  LLKLQSLRVFSLRGYRILELPDSV-GDLRYLRYLNLSGTEIRTLPESV-SKLYNLHSLLL 142
           L    +L+V  L+  RI  +       L  L +L+LS   + +L  S    L +L  L L
Sbjct: 46  LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105

Query: 143 EDCDRLE-KLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGL 201
                    + +   NL  L  L+  N ++  E+               F       +GL
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI-----------DF-------AGL 147

Query: 202 RELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMG 261
             L  L           ++ +  + + +   L    ++  L L  +            + 
Sbjct: 148 TSLNEL----------EIKALS-LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196

Query: 262 VLDMLKPHTN-LEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSL 320
            +  L+     L +F        +  + +   +F   V       ++   L  + +L  +
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 321 K--HLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPK 378
           +    T+ G+       S+   +   +    +  L       +                K
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF--YDLSTVYSL---LEK 311

Query: 379 LRELRILRC--SKLKGTFPEHLPALEMLVIEGCE------ELLVSVSSLPALCKFIISGC 430
           ++ + +       +  +F +HL +LE L +          +      + P+L   ++S  
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ- 370

Query: 431 KKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGL 490
                          N +     + ++ L       L  L  L +S   +       D  
Sbjct: 371 ---------------NHLRSMQKTGEILL------TLKNLTSLDIS---RNTFHPMPDSC 406

Query: 491 LQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSS 550
                 ++ L + S   ++ +     +         LE L +S       L   SL L  
Sbjct: 407 QWPE-KMRFLNLSST-GIRVVKTCIPQT--------LEVLDVSNN----NLDSFSLFLPR 452

Query: 551 LREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISG--- 607
           L+E+ I   + L + P+ +L   L  ++IS    LKS+P+    D  +SL+ + +     
Sbjct: 453 LQELYISRNK-LKTLPDASLFPVLLVMKISRNQ-LKSVPDGIF-DRLTSLQKIWLHTNPW 509

Query: 608 ---CDSLTYI 614
              C  + Y+
Sbjct: 510 DCSCPRIDYL 519

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 59/388 (15%), Positives = 118/388 (30%), Gaps = 52/388 (13%)

Query: 466 QLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYE 525
            L  LE L LS     ++          + SLK L +      Q+L           L  
Sbjct: 72  SLGSLEHLDLS---DNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNL-- 125

Query: 526 LLEYLRLSYCEGLVKLPQSSLS-LSSLREIEIYGCRSLVSFPEVALPS--KLKKIEISSC 582
             + LR+   E   ++ +   + L+SL E+EI     L ++   +L S   +  + +   
Sbjct: 126 --QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLS 182

Query: 583 DALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEG 642
           +    L E    D  SS+  LE+    +L       LP       +       ++  +E 
Sbjct: 183 E-SAFLLEI-FADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

Query: 643 IQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSK 702
                        L  +E   C               +  L       +++ L +     
Sbjct: 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV-TIRRLHIPQFYL 298

Query: 703 LESIAEMLDNNTSLEKINISGCGNLQTLP----SGLHNL-------CQLQEISIASCG-- 749
              ++ +      +++I +     +  +P      L +L         + E  + +    
Sbjct: 299 FYDLSTVYSLLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357

Query: 750 --------------NLVSSPEGGLPCAKLAMLAI----YNCKRLEALPKGLHNLKSLQEL 791
                         +L S  + G     L  L       N      +P      + ++ L
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN--TFHPMPDSCQWPEKMRFL 415

Query: 792 RIGKGVALPSLEEDGLPTNLHVLLINGN 819
            +     +  + +  +P  L VL ++ N
Sbjct: 416 NLS-STGIRVV-KTCIPQTLEVLDVSNN 441

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 44/227 (19%), Positives = 76/227 (33%), Gaps = 32/227 (14%)

Query: 38  HLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLR 97
           H+      YD    +  L  ++ +       + NSK   +  S    L  L+ L    L 
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRIT------VENSKVFLVPCSFSQHLKSLEFLD---LS 342

Query: 98  GYRILEL----PDSVGDLRYLRYLNLSGTEIRTLPE---SVSKLYNLHSLLLEDCDRLEK 150
              ++E         G    L+ L LS   +R++ +    +  L NL SL +        
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHP 401

Query: 151 LCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL----CSFVVGKDSGSGLRELKL 206
           +        K+  L  S+T  +  +   I     L+ L     +          L+EL +
Sbjct: 402 MPDSCQWPEKMRFLNLSSTG-IRVVKTCI--PQTLEVLDVSNNNLDSFSLFLPRLQELYI 458

Query: 207 ----LTQLRGTLCISNLENVK----HIVDAEDAQLDRKENLKELWLR 245
               L  L        L  +K     +    D   DR  +L+++WL 
Sbjct: 459 SRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 66.2 bits (162), Expect = 2e-11
 Identities = 69/371 (18%), Positives = 114/371 (30%), Gaps = 78/371 (21%)

Query: 466 QLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYE 525
           +L  L +LI ++                  ++ +L++     L  L  +  K     +  
Sbjct: 62  KLTGLTKLICTS-----------------NNITTLDLSQNTNLTYLACDSNKLTNLDVTP 104

Query: 526 L--LEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCD 583
           L  L YL     + L KL  S      L  +                   L +I++S   
Sbjct: 105 LTKLTYLNCDTNK-LTKLDVS--QNPLLTYLNCARN-------------TLTEIDVSHNT 148

Query: 584 ALKSLPEAWMCDTNSSLEILEISGCDSLT--YIAGVQL-------PPSLKRLKICHCDNI 634
            L  L     C  N  +  L+++    LT    +  ++          L RL      NI
Sbjct: 149 QLTEL----DCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTN-NI 203

Query: 635 RTLTVE-----EGIQCSSGRRYTSSLLEHLEIYSCPSLTCIF-SKNELPATLESLEVGNL 688
             L +        + CS      S+ L  +++     LT    S N     L  L+V  L
Sbjct: 204 TKLDLNQNIQLTFLDCS------SNKLTEIDVTPLTQLTYFDCSVNP----LTELDVSTL 253

Query: 689 PPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASC 748
              L  L       L  I   L +NT L      GC  ++ L   + +  QL  +   + 
Sbjct: 254 -SKLTTLHCIQT-DLLEID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAA 307

Query: 749 GNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLP 808
             +        P  KL  L + N + L  L   + +   L+ L       +      G  
Sbjct: 308 -GITELDLSQNP--KLVYLYLNNTE-LTELD--VSHNTKLKSLSCV-NAHIQDFSSVGKI 360

Query: 809 TNLHVLLINGN 819
             L+       
Sbjct: 361 PALNNNFEAEG 371

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 54/322 (16%), Positives = 110/322 (34%), Gaps = 62/322 (19%)

Query: 466 QLPKLEELILSTKEQTYIWKSHDGLLQDV----CSLKSLEIRSCPKLQSLVAEEEKDQQQ 521
            L KL  L   T + T +  S + LL  +     +L  +++    +L  L     K    
Sbjct: 104 PLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNK---- 159

Query: 522 QLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPS-KLKKIEIS 580
                +  L ++    L  L     S + + E+++   + L     +   +  + K++++
Sbjct: 160 ----KITKLDVTPQTQLTTL---DCSFNKITELDVSQNKLLN---RLNCDTNNITKLDLN 209

Query: 581 SCDALKSLPEAWMCDTNSSLEILEISGCDSLTYI-----AGVQLPPS-LKRLKICHCDN- 633
               L  L     C +N  L  ++++    LTY         +L  S L +L   HC   
Sbjct: 210 QNIQLTFL----DCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQT 264

Query: 634 -IRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIF-SKNELPATLESLEVGNLPPS 691
            +  + +    Q    +      ++ L++     L  +      +      L++   P  
Sbjct: 265 DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI----TELDLSQNP-K 319

Query: 692 LKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLP---------SGLHNLCQLQE 742
           L  L              L+N   L ++++S    L++L          S +  +  L  
Sbjct: 320 LVYLY-------------LNNT-ELTELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNN 365

Query: 743 ISIASCGNLVSSPEGGLPCAKL 764
              A  G  ++ P+  L    L
Sbjct: 366 NFEAE-GQTITMPKETLTNNSL 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 72/422 (17%), Positives = 127/422 (30%), Gaps = 115/422 (27%)

Query: 496 SLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIE 555
           +  ++       L SL           + ++     +    GL KL     + +++  ++
Sbjct: 32  ATDTISEEQLATLTSLDC-----HNSSITDMTG---IEKLTGLTKL---ICTSNNITTLD 80

Query: 556 IYGCRSLVSFPEVALPS-KLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLT-- 612
           +    +L      A  S KL  ++++    L  L     CDTN  L  L++S    LT  
Sbjct: 81  LSQNTNLTYL---ACDSNKLTNLDVTPLTKLTYL----NCDTNK-LTKLDVSQNPLLTYL 132

Query: 613 YIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCI-F 671
             A   L      + + H   +  L       C       +  +  L++     LT +  
Sbjct: 133 NCARNTL----TEIDVSHNTQLTEL------DCHL-----NKKITKLDVTPQTQLTTLDC 177

Query: 672 SKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLP 731
           S N++      L+V      L  L               D N ++ K++++    L  L 
Sbjct: 178 SFNKI----TELDVSQNK-LLNRL-------------NCDTN-NITKLDLNQNIQLTFL- 217

Query: 732 SGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQEL 791
               +  +L EI +     L                       L  L   +  L  L  L
Sbjct: 218 -DCSS-NKLTEIDVTPLTQLTY-------------FDCSVNP-LTELD--VSTLSKLTTL 259

Query: 792 RIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDM 851
                  L  ++     T L      G  +I    ++        +   QL +++C    
Sbjct: 260 HCI-QTDLLEIDLTHN-TQLIYFQAEGCRKI--KELD-------VTHNTQLYLLDCQAA- 307

Query: 852 VSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQN--LTGLVLGNCPKLK 909
                                +T L +   P L  L      L N  LT L + +  KLK
Sbjct: 308 --------------------GITELDLSQNPKLVYL-----YLNNTELTELDVSHNTKLK 342

Query: 910 YF 911
             
Sbjct: 343 SL 344

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 52/388 (13%), Positives = 110/388 (28%), Gaps = 86/388 (22%)

Query: 526 LLEYLRLSYCEGLVKLPQSSLS-LSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDA 584
               +  ++   +      S   L++L  ++ +    +     +   + L K+  +S + 
Sbjct: 20  FASEVAAAF--EMQATDTISEEQLATLTSLDCHNSS-ITDMTGIEKLTGLTKLICTSNN- 75

Query: 585 LKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQ 644
           + +L  +     N++L  L                   L  L +     +  L  +    
Sbjct: 76  ITTLDLS----QNTNLTYLACDSN-------------KLTNLDVTPLTKLTYLNCD---- 114

Query: 645 CSSGRRYTSSLLEHLEIYSCPSLTCIF-SKNELPATLESLEVGNLPPSLKLLLVWGCSKL 703
                   ++ L  L++   P LT +  ++N L      ++V +    L  L      K+
Sbjct: 115 --------TNKLTKLDVSQNPLLTYLNCARNTL----TEIDVSHNT-QLTELDCHLNKKI 161

Query: 704 ESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAK 763
             +   +   T L  ++ S    +  L   +     L  ++  +  N+           +
Sbjct: 162 TKLD--VTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTN-NITKLDLNQNI--Q 213

Query: 764 LAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIW 823
           L  L   + K L  +   +  L  L          L  L+   L + L  L         
Sbjct: 214 LTFLDCSSNK-LTEID--VTPLTQLTYFDCS-VNPLTELDVSTL-SKLTTLHCIQTD--- 265

Query: 824 KSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPN 883
              I+        +   QL     +                           ++     +
Sbjct: 266 LLEID-------LTHNTQLIYFQAEG-----------------------CRKIKELDVTH 295

Query: 884 LERLTSSIVDLQNLTGLVLGNCPKLKYF 911
             +L         +T L L   PKL Y 
Sbjct: 296 NTQLYLLDCQAAGITELDLSQNPKLVYL 323

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 6e-05
 Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 28/225 (12%)

Query: 690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCG 749
            +    +        +     +   +L  ++     ++  +  G+  L  L ++   +  
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNS-SITDMT-GIEKLTGLTKLIC-TSN 74

Query: 750 NLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPT 809
           N+ +          L  LA  + K L  L   +  L  L  L       L  L+    P 
Sbjct: 75  NITTLDLSQNT--NLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTN-KLTKLDVSQNP- 127

Query: 810 NLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPL 869
            L  L    N  +  + I+        S   QLT ++C  +          +   T L  
Sbjct: 128 LLTYLNCARN-TL--TEID-------VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC 177

Query: 870 PA-SLTYLRIEGFPNLERLTSSIVDLQN--LTGLVLGNCPKLKYF 911
               +T L +     L RL     +     +T L L    +L + 
Sbjct: 178 SFNKITELDVSQNKLLNRL-----NCDTNNITKLDLNQNIQLTFL 217

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 3e-10
 Identities = 79/593 (13%), Positives = 170/593 (28%), Gaps = 91/593 (15%)

Query: 368 GSSQGVE--RFPKLRELRILRCSKLKGTFPE---HLPALEMLVIEGCEELLVSVSSLPAL 422
           G+  GV      ++  L  L      G  P+    L  LE+L +    E +      P  
Sbjct: 70  GAQPGVSLNSNGRVTGLS-LEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKG 128

Query: 423 CKFIISGCKKVVW--ESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQ 480
               +S  +K           +         D       + P +  + K   + L   + 
Sbjct: 129 ISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ- 187

Query: 481 TYIWKSHDGLLQDVCSLKSL--EIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGL 538
                    + Q   ++  +   +    KL+           + + E  E     Y +  
Sbjct: 188 ---------IGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238

Query: 539 VKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNS 598
                   +L  L ++E+Y C +L   P            + +   ++ +        N 
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPT----------FLKALPEMQLI----NVACNR 284

Query: 599 SLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGI-QCSSGRRYTSSLLE 657
            +   ++        +A   +   ++ + I +  N++T  VE  + +           L 
Sbjct: 285 GISGEQLKD--DWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKK--------LG 333

Query: 658 HLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESI-AEMLDNNTSL 716
            LE             N+L   L +   G+    L  L +    ++  I A        +
Sbjct: 334 MLEC----------LYNQLEGKLPAF--GSE-IKLASLNLAYN-QITEIPANFCGFTEQV 379

Query: 717 EKINISGCGNLQTLPS--GLHNLCQLQEISIA-------SCGNLVSSPEGGLPCAKLAML 767
           E ++ +    L+ +P+     ++  +  I  +          N             ++ +
Sbjct: 380 ENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 768 AIYNCKRLEALPKG-LHNLKSLQELR--------IGKGVALPSLEEDGLPTNLHVLLING 818
            + N + +   PK        L  +         I K       E       L  + +  
Sbjct: 439 NLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 819 NMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRI 878
           N  +  + +           L  + +         FP +  +  +     +         
Sbjct: 498 NK-L--TKLSDDFRATTLPYLVGIDLSYN--SFSKFPTQPLNSSTLKGFGI---RNQRDA 549

Query: 879 EGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLI 931
           +G   L      I    +LT L +G+   ++   E  +  ++  L I   P I
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNE-KITPNISVLDIKDNPNI 600

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 8e-07
 Identities = 21/169 (12%), Positives = 44/169 (26%), Gaps = 31/169 (18%)

Query: 69  LSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLP 128
              +   Y        L+K                +  S         +      I  + 
Sbjct: 145 YQKTFVDYDPREDFSDLIKDCINSDPQQ-----KSIKKSSRITLKDTQIGQLSNNITFVS 199

Query: 129 ESVSKLYNLHSL-------------------LLEDCDRLEKLCADMGNLVKLHHLKNSNT 169
           ++V +L  L                        E   + +       NL  L  ++  N 
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259

Query: 170 KSLEEMPVGIGRLTCLQTL-------CSFVVGKDSGSGLRELKLLTQLR 211
            +L ++P  +  L  +Q +        S    KD    L +  +  +++
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 82/654 (12%), Positives = 180/654 (27%), Gaps = 128/654 (19%)

Query: 107 SVGDLRYLRYLNLSGTEIR-TLPESVSKLYNLHSLLL----EDCDRLEKLCADMGNLVKL 161
           S+     +  L+L G      +P+++ +L  L  L L    E  +        +   +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 162 HHLKNSNTKSLEEMPVGIGRLTCLQ-TLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLE 220
              +       +       R                  S  +  ++  +      I  L 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD---TQIGQLS 192

Query: 221 NVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGY 280
           N    V     +L     L++ ++  + + + +     E    +  + +           
Sbjct: 193 NNITFVSKAVMRL---TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-------- 241

Query: 281 GGMKFPTWLGDSSFSKLVTLKFKNCDMCTALP-SVGQLPSLKHLTVRG--MSKVKRLGSE 337
                       +   L  ++  NC   T LP  +  LP ++ + V        ++L  +
Sbjct: 242 -----DLKWD--NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294

Query: 338 FYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCS--KLKGTFP 395
           +          +++ +           +            K+++L +L C   +L+G  P
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETS-------LQKMKKLGMLECLYNQLEGKLP 347

Query: 396 E--HLPALEMLVIEGC--EELLVSV-SSLPALCKFIISGCKKVVWESATGHLGSQNSVVC 450
                  L  L +      E+  +       +     +  K          L        
Sbjct: 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK----------LKY------ 391

Query: 451 RDTSNQVFLAGPLKPQLPKLEELILS----TKEQTYIWKSHDGLLQDVCSLKSLEIRSCP 506
                           +  +  +  S           +   D       ++ S+ + +  
Sbjct: 392 -------IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN- 443

Query: 507 KLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFP 566
           ++     E            L  + L     L ++P++SL   +                
Sbjct: 444 QISKFPKELFSTGSP-----LSSINLMGNM-LTEIPKNSLKDENE---NFKNTYL----- 489

Query: 567 EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRL 626
                  L  I++     L  L + +   T   L  +++S   S +       P      
Sbjct: 490 -------LTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-SFSKF-----PTQ---- 531

Query: 627 KICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHL--EIYSCPSLTCI-FSKNEL----PAT 679
              +   ++   +         R      L      I  CPSLT +    N++       
Sbjct: 532 -PLNSSTLKGFGIRNQRDAQGNR-----TLREWPEGITLCPSLTQLQIGSNDIRKVNEKI 585

Query: 680 LESLEV----GNLPPSLKLLLVWGCSKLESIAEMLD-NNTSLEKINISGCGNLQ 728
             ++ V     N  P++ + L + C  +E+   ML  + T     +I GC  L 
Sbjct: 586 TPNISVLDIKDN--PNISIDLSYVCPYIEAGMYMLFYDKTQ----DIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 14/112 (12%), Positives = 42/112 (37%), Gaps = 7/112 (6%)

Query: 82  LPKLLKLQSLRVFSLRGYRILEL--PDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHS 139
           L      + +++  +    +       S+  ++ L  L     ++     +      L S
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLAS 357

Query: 140 LLLEDCDRLEKLCADM-GNLVKLHHLKNSNTKSLEEMP--VGIGRLTCLQTL 188
           L L    ++ ++ A+  G   ++ +L  ++ K L+ +P       ++ +  +
Sbjct: 358 LNLAYN-QITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAI 407

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 8e-05
 Identities = 20/117 (17%), Positives = 29/117 (24%), Gaps = 20/117 (17%)

Query: 74  PGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDS--VGDLRYLRYLNLSGTEIRTLPESV 131
           P                L    LR  ++ +L D      L YL  ++LS       P   
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQP 532

Query: 132 SKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188
                L    +                   +       ++L E P GI     L  L
Sbjct: 533 LNSSTLKGFGI------------------RNQRDAQGNRTLREWPEGITLCPSLTQL 571

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 16/119 (13%)

Query: 83  PKLLKLQSLRVFSLRGYRILELPD---------SVGDLRYLRYLNLSGTEIRTL--PESV 131
             L  L  +++ ++   R +                    ++ + +    ++T     S+
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326

Query: 132 SKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLK-NSNTKSLEEMPVGI-GRLTCLQTL 188
            K+  L  L      +LE      G+ +KL  L    N   + E+P    G    ++ L
Sbjct: 327 QKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYN--QITEIPANFCGFTEQVENL 382

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 7e-04
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 9/69 (13%)

Query: 83  PKLLKLQSLRVFSLRGYRIL-------ELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLY 135
            + L   +L+ F +R  R         E P+ +     L  L +   +IR + E +    
Sbjct: 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TP 587

Query: 136 NLHSLLLED 144
           N+  L ++D
Sbjct: 588 NISVLDIKD 596

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 61.5 bits (149), Expect = 8e-10
 Identities = 65/489 (13%), Positives = 137/489 (28%), Gaps = 85/489 (17%)

Query: 373 VERFPKLRELRILRCSKLK-----------------GTFPEHLPALEMLVIEGCEE---- 411
             RFP LR L++    +                        +L  L+ +           
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD 128

Query: 412 -LLVSVSSLPALCKFIISGCKKVVWES----ATG--HLGSQNSVVCRDTSNQVFLAGPLK 464
              ++ +    L    +  C     +      T    + +        +         L 
Sbjct: 129 LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188

Query: 465 PQLPKLEELILSTKEQTYIWKSHDGLLQDVC-SLKSLEIRSCPKLQSLVAEEEKDQQQQL 523
                LE L     E   I       +   C SL S+++     L+ +          + 
Sbjct: 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFF-------KA 241

Query: 524 YELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLV--SFPEVA-LPSKLKKIEIS 580
              LE          + +P+  ++L   R++   G   +     P +    ++++K+++ 
Sbjct: 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL 301

Query: 581 SCDAL--KSLPEAWMCDTNSSLEILEISGC---DSLTYIAGVQLPPSLKRLKICHCDNIR 635
                          C    +LE+LE         L  +A  Q    LKRL+I    + +
Sbjct: 302 YALLETEDHCTLIQKC---PNLEVLETRNVIGDRGLEVLA--QYCKQLKRLRIERGADEQ 356

Query: 636 TLTVEEGIQCSSGRRYTSSL---LEHLEIY--------------SCPSLTCI---FSKNE 675
            +  EEG+    G    +     LE++ +Y                 +L          E
Sbjct: 357 GMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE 416

Query: 676 LPATLESLEVG------NLPPSLKLLLVWGCSKL--ESIAEMLDNNTSLEKINISGCGNL 727
              T   L+ G            +         L    ++ +   + ++  + +   G  
Sbjct: 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES 476

Query: 728 -QTLPSGLHNLCQLQEISIASCGNL-VSSPEGGLPCAKLAMLAIYNCK------RLEALP 779
            + L         LQ++ +  C     +          L  L +   +       L  + 
Sbjct: 477 DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMA 536

Query: 780 KGLHNLKSL 788
           +   N++ +
Sbjct: 537 RPYWNIELI 545

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 55.7 bits (134), Expect = 5e-08
 Identities = 33/289 (11%), Positives = 86/289 (29%), Gaps = 33/289 (11%)

Query: 527 LEYLRLSYCEGL--VKLPQSSLSLSSLREIEIYGC-------RSLVSFPEVALPSKLKKI 577
           LE L+L  C G     L         ++ + +          + L    +     ++   
Sbjct: 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNF 199

Query: 578 EISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTL 637
            ++    +       +     SL  +++   + L  +   +   +L+       +    +
Sbjct: 200 YMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGM 259

Query: 638 TVE-------EGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPP 690
             +         +          + +  L       +  +     L  T +   +    P
Sbjct: 260 PEKYMNLVFPRKLCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYALLETEDHCTLIQKCP 318

Query: 691 SLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGN 750
           +L++L          +  +      L+++ I    + Q +      + Q   I++A    
Sbjct: 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG-- 376

Query: 751 LVSSPEGGLPCAKLAMLAIYNCK----RLEALPKGLHNLKSLQELRIGK 795
                     C +L  +A+Y        LE++   L NL   + + + +
Sbjct: 377 ----------CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.8 bits (116), Expect = 7e-06
 Identities = 42/320 (13%), Positives = 90/320 (28%), Gaps = 39/320 (12%)

Query: 591 AWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRR 650
            W    + + E + ++ C + T     +  P+L+ LK+              +   +   
Sbjct: 43  RWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMF----NLIPENWGG 98

Query: 651 YTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEV--GNLPPSLKLLLVWGCSKL--ESI 706
           Y +  +  +   +   L  +  +  +  +   L+         L+ L +  CS    + +
Sbjct: 99  YVTPWVTEI-SNNLRQLKSVHFRR-MIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGL 156

Query: 707 AEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAM 766
             ++ +   ++ + +      +     LH L Q          +L          AK+  
Sbjct: 157 LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ-------HNTSLEVLNFYMTEFAKI-- 207

Query: 767 LAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSM 826
                    + L     N +SL  +++G    L  +       NL               
Sbjct: 208 -------SPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF----CGGSLNED 256

Query: 827 IERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNL-E 885
           I     +      R+L  +                    + P  A +  L +       E
Sbjct: 257 IGMPEKYMNLVFPRKLCRLGLSY--------MGPNEMPILFPFAAQIRKLDLLYALLETE 308

Query: 886 RLTSSIVDLQNLTGLVLGNC 905
              + I    NL  L   N 
Sbjct: 309 DHCTLIQKCPNLEVLETRNV 328

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 61/465 (13%), Positives = 127/465 (27%), Gaps = 86/465 (18%)

Query: 84  KLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIR--TLPESVSKLYNLHSLL 141
           K L ++        G  + EL      L  L +      +I    L        +L S+ 
Sbjct: 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226

Query: 142 LEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGL 201
           + D + LE     +G      +L+     SL E      +   L           S  G 
Sbjct: 227 VGDFEILE----LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282

Query: 202 RELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMG 261
            E+ +L      +   +L       +     + +  NL+ L  R  +          + G
Sbjct: 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI---------GDRG 333

Query: 262 VLDMLKPHTNLE----QFCIKGYGGMKFPTWLGDSSF-------SKLVTLKFKNCDMC-T 309
           +  + +    L+    +      G       +             +L  +     D+   
Sbjct: 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393

Query: 310 ALPSVGQ-LPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHG 368
           +L S+G  L +L    +  + + +R+                              + +G
Sbjct: 394 SLESIGTYLKNLCDFRLVLLDREERITDL--------------------------PLDNG 427

Query: 369 SSQGVERFPKLRELRILRCSKLKG-----TFPEHLPALEMLVIEGCEE----LLVSVSSL 419
               +    KLR                    ++ P +  +++    E    L+      
Sbjct: 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC 487

Query: 420 PALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKE 479
           P L K  + GC     E A     ++                     LP L  L +    
Sbjct: 488 PNLQKLEMRGCC--FSERAIAAAVTK---------------------LPSLRYLWVQGYR 524

Query: 480 QTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLY 524
            +   +    + +   +++ +  R  P++       E +    + 
Sbjct: 525 ASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHIL 569

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 72/555 (12%), Positives = 155/555 (27%), Gaps = 98/555 (17%)

Query: 110 DLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNT 169
           D     ++ ++     T      +  NL SL L+   R       M NL+   +     T
Sbjct: 48  DSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAA-----MFNLI-PENWGGYVT 101

Query: 170 KSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCIS-NLENVKHIVDA 228
             + E+   + +L  +      ++  D       L  L + R     +  L+        
Sbjct: 102 PWVTEISNNLRQLKSVH--FRRMIVSDLD-----LDRLAKARADDLETLKLDKCSGFTTD 154

Query: 229 EDAQLDRK-ENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPT 287
               +      +K L +  +     S   +    + ++ + +T+LE          K   
Sbjct: 155 GLLSIVTHCRKIKTLLMEES-----SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK--- 206

Query: 288 WLGDSSF-------SKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYG 340
            +              LV++K  + ++   +       +L+            L  +   
Sbjct: 207 -ISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCG------GSLNEDIGM 259

Query: 341 DDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPE---H 397
            +  +       L    L        +          ++R+L +L               
Sbjct: 260 PEKYMNLVFPRKLCRLGLSYMGP---NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK 316

Query: 398 LPALEMLVIEGC---EELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVV----- 449
            P LE+L          L V       L +  I              L SQ  ++     
Sbjct: 317 CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376

Query: 450 ----------CRDTSNQVFLA-GPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLK 498
                       D +N+   + G     L     ++L  +E+       +G+   +   K
Sbjct: 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK 436

Query: 499 SLEI-------------------RSCPKLQSLVAEEEKDQQQQLYEL------LEYLRLS 533
            L                     +  P ++ ++     +  + L E       L+ L + 
Sbjct: 437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496

Query: 534 YC----EGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEV---ALPS-KLKKIEISSCDAL 585
            C      +         L SLR + + G R+ ++  ++   A P   ++ I       +
Sbjct: 497 GCCFSERAIAAA---VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV 553

Query: 586 KSLPEAWMCDTNSSL 600
               E    +  + +
Sbjct: 554 NQQGEIREMEHPAHI 568

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.1 bits (143), Expect = 4e-09
 Identities = 19/196 (9%), Positives = 51/196 (26%), Gaps = 11/196 (5%)

Query: 80  SMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHS 139
             +   +    L+   L   ++  +         + +++L   ++  + +++    NL  
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241

Query: 140 LLLED----CDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGK 195
             L      C  L    +    +  +            E    +  L      C   +  
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

Query: 196 DSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSRE 255
                L  LK       +   S  E ++        + + +   +E+      Y +   +
Sbjct: 302 PFADRLIALKRKEHALLSGQGSETERLE-------CERENQARQREIDALKEQYRTVIDQ 354

Query: 256 AETEMGVLDMLKPHTN 271
                     L+    
Sbjct: 355 VTLRKQAKITLEQKKK 370

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 7e-06
 Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 8/122 (6%)

Query: 69  LSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRI--LELPDSVGDLRYLRYLNLSGTEIRT 126
           L+N+K   L         ++Q L    L+   I  +   +       L +LNL    I  
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYL---DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183

Query: 127 LPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQ 186
           +   V     L +L L    +L  +  +  +   +  +   N K L  +   +     L+
Sbjct: 184 VKGQVV-FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLE 240

Query: 187 TL 188
             
Sbjct: 241 HF 242

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 13/130 (10%), Positives = 34/130 (26%), Gaps = 4/130 (3%)

Query: 80  SMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHS 139
             +   +    L+   L   ++  +         + +++L   ++  + +++    NL  
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241

Query: 140 LLLED----CDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGK 195
             L      C  L    +    +  +            E    +  L      C   +  
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

Query: 196 DSGSGLRELK 205
                L  L 
Sbjct: 302 PFADRLIALG 311

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 5/104 (4%)

Query: 87  KLQSLRVFSLRGYRI--LELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLED 144
               ++   L+   I  +   +       L +LNL    I  +   V     L +L L  
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSS 200

Query: 145 CDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188
             +L  +  +  +   +  +   N K L  +   +     L+  
Sbjct: 201 N-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHF 242

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 11/112 (9%)

Query: 80  SMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHS 139
                L  L +LR   L    + EL         +  L+ +   I  +  S        +
Sbjct: 71  YETLDLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSR--GQGKKN 124

Query: 140 LLLEDCDRLEKL-CADMGNLVKLHHLKNSNTKSLEEMPVG--IGRLTCLQTL 188
           + L +  ++  L   D G   ++ +L     + ++ +           L+ L
Sbjct: 125 IYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHL 174

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 103/590 (17%), Positives = 183/590 (31%), Gaps = 103/590 (17%)

Query: 85  LLKLQSLRVFSLRGYRILELPDSV-GDLRYLRYLNLSGTEIRTLPESV-SKLYNLHSLLL 142
                 L+V  L    I  + D     L +L  L L+G  I++L     S L +L  L+ 
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 143 EDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLR 202
            +            NL  L +    + K+L+E+ V    +   +    F       S L 
Sbjct: 108 VET-----------NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-------SNLT 149

Query: 203 ELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGV 262
            L+ L        +S+  N    +   D  L     +  L L   L  S +     + G 
Sbjct: 150 NLEHLD-------LSS--NKIQSIYCTD--LRVLHQMPLLNLSLDL--SLNPMNFIQPGA 196

Query: 263 LDMLKPHT-NLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLK 321
              ++ H   L                L      +LV  +F+N            L  L 
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK-SALEGLC 255

Query: 322 HLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQE-WEDSIPHGSSQGVERFPKLR 380
           +LT+           ++Y DD    F  L  +    L     + +   S          +
Sbjct: 256 NLTIEEFRLAY---LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS-----YNFGWQ 307

Query: 381 ELRILRCS--KLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESA 438
            L ++ C   +      + L  L     +G      S   LP+L    +S          
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKG--GNAFSEVDLPSLEFLDLSR--------- 356

Query: 439 TGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLK 498
                  N +  +   +Q             L+ L LS      +  +  GL      L+
Sbjct: 357 -------NGLSFKGCCSQSDF------GTTSLKYLDLSFNGVITMSSNFLGLE----QLE 399

Query: 499 SLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLS-LSSLREIEIY 557
            L+ +    L+ +         +     L YL +S+            + LSSL  +++ 
Sbjct: 400 HLDFQHS-NLKQMSEFSVFLSLRN----LIYLDISHTH-TRVAFNGIFNGLSSLEVLKMA 453

Query: 558 GCRSLVSFPEVALP--SKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIA 615
           G     +F          L  +++S C  L+ L      ++ SSL++L ++    L  + 
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF-NSLSSLQVLNMASN-QLKSVP 510

Query: 616 GVQLP--PSLKRLKI------CHCDNIR---------TLTVEEGIQCSSG 648
                   SL+++ +      C C  I          +   +   +CS  
Sbjct: 511 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 560

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 70/506 (13%), Positives = 153/506 (30%), Gaps = 106/506 (20%)

Query: 467 LPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSL--------------EIRSCPKLQSL- 511
           L  L++L+     +T +    +  +  + +LK L                 +   L+ L 
Sbjct: 99  LSSLQKLVAV---ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 512 --------VAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLV 563
                   +   +     Q+  L   L LS    +  +   +     L ++ +      +
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSL 214

Query: 564 SFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSL 623
           +  +  +   L  +E+      +            +LE  + S  + L  +       ++
Sbjct: 215 NVMKTCI-QGLAGLEVHRLVLGEFRN-------EGNLEKFDKSALEGLCNL-------TI 259

Query: 624 KRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESL 683
           +  ++ + D      ++     ++   ++   L  + I      +  F         + L
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFS---LVSVTIERVKDFSYNFG-------WQHL 309

Query: 684 EVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLC--QLQ 741
           E+ N               L+ +     +N      +     +L+ L     +L    L 
Sbjct: 310 ELVNC--KFGQFPTLKLKSLKRL--TFTSNKGGNAFSEVDLPSLEFL-----DLSRNGLS 360

Query: 742 EISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPS 801
                S        + G     L  L +     +  +      L+ L+ L       L  
Sbjct: 361 FKGCCSQ------SDFGTT--SLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQ-HSNLKQ 410

Query: 802 LEEDGL---PTNLHVLLINGNM--EIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPP 856
           + E  +     NL  L I+       +  +         F+ L  L ++    +      
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGI---------FNGLSSLEVLKMAGNSFQENF 461

Query: 857 KADDKGSGTVLPLPASLTYLRIEGFPN-LERLTSSI-VDLQNLTGLVLGNCPKLKYFPE- 913
             D      +     +LT+L +      LE+L+ +    L +L  L + +  +LK  P+ 
Sbjct: 462 LPD------IFTELRNLTFLDLSQ--CQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDG 512

Query: 914 --KGLPS-SLLQLSINR----CPLIE 932
               L S   + L  N     CP I+
Sbjct: 513 IFDRLTSLQKIWLHTNPWDCSCPRID 538

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 8/115 (6%)

Query: 80  SMLPKLLKLQSLRVFSLRGYRILEL---PDSVGDLRYLRYLNLSGTEIRTLPESVSKLYN 136
                 + L SL    L    +        S      L+YL+LS   + T+  +   L  
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397

Query: 137 LHSLLLEDCDRLEKL--CADMGNLVKLHHLKNSNTKSLEEMPVGI-GRLTCLQTL 188
           L  L  +    L+++   +   +L  L +L  S+T        GI   L+ L+ L
Sbjct: 398 LEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVL 450

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 29/118 (24%), Positives = 40/118 (33%), Gaps = 21/118 (17%)

Query: 82  LPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLY------ 135
           LP L     LR   + G ++  LP     L  L   +   T +  LP  + KL+      
Sbjct: 76  LPALPP--ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL 133

Query: 136 --------NLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCL 185
                    L  L + D  +L  L A    L KL    N     L  +P+    L  L
Sbjct: 134 TSLPVLPPGLQELSVSDN-QLASLPALPSELCKLWAYNN----QLTSLPMLPSGLQEL 186

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.4 bits (128), Expect = 3e-07
 Identities = 65/276 (23%), Positives = 106/276 (38%), Gaps = 56/276 (20%)

Query: 527 LEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEIS--SCDA 584
           +  L +     L  LP        LR +E+ G + L S P   LP  L ++ I       
Sbjct: 63  ITTLVIPDNN-LTSLPAL---PPELRTLEVSGNQ-LTSLPV--LPPGLLELSIFSNPLTH 115

Query: 585 LKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQ 644
           L +LP        S L  L I G   LT      LP     L+     + +  ++     
Sbjct: 116 LPALP--------SGLCKLWIFGN-QLT-----SLPVLPPGLQELSVSDNQLASLPALP- 160

Query: 645 CSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGN-----LPPSLKLL--LV 697
                    S L  L  Y+   LT +     LP+ L+ L V +     LP     L  L 
Sbjct: 161 ---------SELCKLWAYNN-QLTSL---PMLPSGLQELSVSDNQLASLPTLPSELYKLW 207

Query: 698 WGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG 757
              ++L S+  +    + L+++ +SG   L +LP       +L+E+ ++    L S P  
Sbjct: 208 AYNNRLTSLPALP---SGLKELIVSGN-RLTSLPV---LPSELKELMVSGN-RLTSLPML 259

Query: 758 GLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRI 793
               + L  L++Y   +L  LP+ L +L S   + +
Sbjct: 260 ---PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNL 291

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 34/145 (23%), Positives = 46/145 (31%), Gaps = 19/145 (13%)

Query: 82  LPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLL 141
           LP  L    +    +    +  LP    +   LR L +SG ++ +LP     L  L    
Sbjct: 55  LPDCL-PAHITTLVIPDNNLTSLPALPPE---LRTLEVSGNQLTSLPVLPPGLLELSIFS 110

Query: 142 LEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL-CSFVVGKDSGSG 200
                 L  L A    L KL    N     L  +PV    L  L              S 
Sbjct: 111 N----PLTHLPALPSGLCKLWIFGN----QLTSLPVLPPGLQELSVSDNQLASLPALPSE 162

Query: 201 LRELKL----LTQLRGTLCISNLEN 221
           L +L      LT L   +  S L+ 
Sbjct: 163 LCKLWAYNNQLTSLP--MLPSGLQE 185

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 66/321 (20%), Positives = 114/321 (35%), Gaps = 93/321 (28%)

Query: 623 LKRLKICHCDNIRTLTVEEGIQCSSGRRYTS------SLLEHLEIYSCPSLTCI------ 670
           +++++ C  +    L V            T+      + +  L I    +LT +      
Sbjct: 31  VQKMRACLNNGNAVLNV-------GESGLTTLPDCLPAHITTLVIPDN-NLTSLPALPPE 82

Query: 671 -----FSKN---ELPATLESL-----------EVGNLPPSLKLLLVWGCSKLESIAEMLD 711
                 S N    LP     L            +  LP  L  L ++G  +L S+  +  
Sbjct: 83  LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGN-QLTSLPVLPP 141

Query: 712 NNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYN 771
               L+++++S    L +LP+    LC+L     A    L S P      + L  L++ +
Sbjct: 142 G---LQELSVSDN-QLASLPALPSELCKLW----AYNNQLTSLPML---PSGLQELSVSD 190

Query: 772 CKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGR 831
             +L +LP     L  L      +  +LP+     LP+ L  L+++GN            
Sbjct: 191 N-QLASLPTLPSELYKLWAYNN-RLTSLPA-----LPSGLKELIVSGN------------ 231

Query: 832 GFHRFSSL----RQLTIMNCDD-DMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPN-LE 885
              R +SL     +L  +      + S P             LP+ L  L +    N L 
Sbjct: 232 ---RLTSLPVLPSELKELMVSGNRLTSLP------------MLPSGLLSLSVYR--NQLT 274

Query: 886 RLTSSIVDLQNLTGLVLGNCP 906
           RL  S++ L + T + L   P
Sbjct: 275 RLPESLIHLSSETTVNLEGNP 295

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.3 bits (102), Expect = 4e-04
 Identities = 30/143 (20%), Positives = 47/143 (32%), Gaps = 13/143 (9%)

Query: 82  LPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLL 141
           LP L     L+   + G R+  LP    +L+ L    +SG  + +LP   S    L SL 
Sbjct: 216 LPALP--SGLKELIVSGNRLTSLPVLPSELKEL---MVSGNRLTSLPMLPS---GLLSLS 267

Query: 142 LEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCS---FVVGKDSG 198
           +    +L +L   + +L     +       L E  +   R        S           
Sbjct: 268 VYRN-QLTRLPESLIHLSSETTVNLEGNP-LSERTLQALREITSAPGYSGPIIRFDMAGA 325

Query: 199 SGLRELKLLTQLRGTLCISNLEN 221
           S  RE + L        +   E 
Sbjct: 326 SAPRETRALHLAAADWLVPAREG 348

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 5e-04
 Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 9/158 (5%)

Query: 82  LPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLL 141
           LP L     L   S+   ++  LP+S+  L     +NL G  +        +   + S  
Sbjct: 256 LPMLP--SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR--EITSAP 311

Query: 142 LEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGL 201
                 +    A      +   L  +    L  +P   G          F    ++ +  
Sbjct: 312 GYSGPIIRFDMAGASAPRETRALHLAAADWL--VPAREGEPAPADRWHMFGQEDNADAFS 369

Query: 202 RELKLLTQLRGTLCISNL-ENVKHIVDA--EDAQLDRK 236
             L  L++    +  +     +   +    ED  L   
Sbjct: 370 LFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALRAN 407

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 114 LRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLE 173
              LN+  + + TLP+ +    ++ +L++ D   L  L A    L  L    N     L 
Sbjct: 42  NAVLNVGESGLTTLPDCLPA--HITTLVIPDN-NLTSLPALPPELRTLEVSGN----QLT 94

Query: 174 EMPVGIGRLTCLQTL 188
            +PV    L  L   
Sbjct: 95  SLPVLPPGLLELSIF 109

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 3e-08
 Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 11/116 (9%)

Query: 80  SMLPKLLKLQSLRVFSLRGYRIL-------ELPDSVGDLRYLRYLNLSGTEIRTLPESVS 132
           +  P++  ++     SL+  +I         +  ++  L  L+ +  + +       +V 
Sbjct: 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV- 467

Query: 133 KLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188
              +      +   + E       NL  L  ++  N  ++ ++P  +  L  LQ+L
Sbjct: 468 ---DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 5e-08
 Identities = 64/459 (13%), Positives = 130/459 (28%), Gaps = 87/459 (18%)

Query: 501 EIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCR 560
            I+   KLQ +           +    E     Y +       S  +L  L ++E+Y C 
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502

Query: 561 SLVSFPEV--ALPSKLKKIEISSCDALKSLPEAWMCDTN--------SSLEILEISGCDS 610
           ++   P+    LP  L+ + I+      S  +     T           ++I  +    +
Sbjct: 503 NMTQLPDFLYDLPE-LQSLNIACN-RGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-N 559

Query: 611 LTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCI 670
           L      + P S     +     +  L                                 
Sbjct: 560 LE-----EFPAS---ASLQKMVKLGLLDC------------------------------- 580

Query: 671 FSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESI-AEMLDNNTSLEKINISGCGNLQT 729
              N++   LE+   G     L  L +    ++E I  +       +E +  S    L+ 
Sbjct: 581 -VHNKV-RHLEAF--GTN-VKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHN-KLKY 633

Query: 730 LPS--GLHNLCQLQEI-----SIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKG- 781
           +P+     ++  +  +      I S G  +S           + + +   + ++  P   
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTEL 692

Query: 782 LHNLKSLQEL--------RIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGF 833
                 +  +         I +    P          L  + +  N ++  + +      
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KL--TSLSDDFRA 749

Query: 834 HRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVD 893
                L  + +        SFP +  +        +         EG   L +  + I  
Sbjct: 750 TTLPYLSNMDVSYN--CFSSFPTQPLNSSQLKAFGI---RHQRDAEGNRILRQWPTGITT 804

Query: 894 LQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIE 932
             +L  L +G+   ++   EK  P  L  L I   P I 
Sbjct: 805 CPSLIQLQIGSN-DIRKVDEKLTP-QLYILDIADNPNIS 841

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 8e-08
 Identities = 39/223 (17%), Positives = 76/223 (34%), Gaps = 20/223 (8%)

Query: 710 LDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAI 769
           LDNN  +  ++++G G    +P  +  L +L+ +S  +    VS    G       M   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 770 Y-NCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIE 828
             +  R+      L   + L    + +     + E   +  +  + L +  +    + I 
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 829 R-GRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERL 887
              +   R + L+ +   N                  T   +         +     E  
Sbjct: 439 FISKAIQRLTKLQIIYFANS---------------PFTYDNIAVDWEDANSDYAKQYENE 483

Query: 888 TSSIVDLQNLTGLVLGNCPKLKYFPE--KGLPS-SLLQLSINR 927
             S  +L++LT + L NCP +   P+    LP    L ++ NR
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 5e-07
 Identities = 92/676 (13%), Positives = 183/676 (27%), Gaps = 146/676 (21%)

Query: 84  KLLKLQSLRVFSLRGYRIL-ELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLL 142
            L     +   SL G+     +PD++G L  L+ L+                     +  
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 143 EDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLR 202
           E                + H ++    K   +    +     LQ   +            
Sbjct: 378 E----------------RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421

Query: 203 ELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGV 262
            + L         I NL N    +     +L     L+ +        S        +  
Sbjct: 422 RISLK-----DTQIGNLTNRITFISKAIQRL---TKLQII----YFANSPFTYDNIAVDW 469

Query: 263 LDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALP-SVGQLPSLK 321
            D    +    +     +  +K            L  ++  NC   T LP  +  LP L+
Sbjct: 470 EDANSDYAKQYENEELSWSNLK-----------DLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 322 HLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWE-DSIPHGSSQGVERFPKLR 380
            L +     +     +               ++   +     +  P  +S       K+ 
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS-----LQKMV 573

Query: 381 ELRILRCS--KLKGTFPE--HLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWE 436
           +L +L C   K++           L  L ++        +  +P                
Sbjct: 574 KLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYN-----QIEEIPE--------------- 612

Query: 437 SATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCS 496
                                           ++E L  S  +  YI   +    + V  
Sbjct: 613 -------------------DFC------AFTDQVEGLGFSHNKLKYI--PNIFNAKSVYV 645

Query: 497 LKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLS-LSSLREIE 555
           + S++     K+ S                   + LSY E + K P    +  S +  I 
Sbjct: 646 MGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTII 703

Query: 556 IYGCRSLVSFPEVALP---------SKLKKIEISSCDALKSLPEAWMCDTNSSLEILEIS 606
           +     + S PE +L            L  I++     L SL + +   T   L  +++S
Sbjct: 704 LSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVS 761

Query: 607 GCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHL--EIYSC 664
                +       P         +   ++   +         R     +L      I +C
Sbjct: 762 YN-CFSSF-----PTQ-----PLNSSQLKAFGIRHQRDAEGNR-----ILRQWPTGITTC 805

Query: 665 PSLTCIF-SKNEL----PATLESLEV----GNLPPSLKLLLVWGCSKLESIAEMLDNNTS 715
           PSL  +    N++          L +     N  P++ + +   C  +E+   +L  + +
Sbjct: 806 PSLIQLQIGSNDIRKVDEKLTPQLYILDIADN--PNISIDVTSVCPYIEAGMYVLLYDKT 863

Query: 716 LEKINISGCGNLQTLP 731
               +I GC +   + 
Sbjct: 864 Q---DIRGC-DALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 7e-07
 Identities = 25/143 (17%), Positives = 36/143 (25%), Gaps = 30/143 (20%)

Query: 52  FGDLYDIQHLRTFLPVILSN----SKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDS 107
           F     I  +       LSN    S P                L    LR  ++  L D 
Sbjct: 693 FATGSPISTII------LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746

Query: 108 --VGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLK 165
                L YL  +++S     + P        L +  +                   H   
Sbjct: 747 FRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGI------------------RHQRD 788

Query: 166 NSNTKSLEEMPVGIGRLTCLQTL 188
               + L + P GI     L  L
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQL 811

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 8e-07
 Identities = 52/441 (11%), Positives = 119/441 (26%), Gaps = 80/441 (18%)

Query: 527 LEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALK 586
           +  L L+      ++P +   L+ L+ +        VS            +       ++
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 587 SLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPP-SLKRLKICHCDNIRTLTVEEGIQC 645
              +    D +  L + ++             +   S   LK     N+           
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL----------- 433

Query: 646 SSGRRYTSSLLEHL--EIYSCPSLTCIF-SKNELPATLESLEVGNLPPSLKLLLVWGCSK 702
                  ++ +  +   I     L  I+ + +       ++         +        +
Sbjct: 434 -------TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV-------DWEDANSDYAKQ 479

Query: 703 LESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIAS---------CGNLVS 753
            E+      N   L  + +  C N+  LP  L++L +LQ ++IA            +   
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

Query: 754 SPEGGLPCAKLAMLAIYNCKRLEALPK--GLHNLKSLQELRIG--KGVALPSLEEDGLPT 809
             +      K+ +  +     LE  P    L  +  L  L     K   L +    G   
Sbjct: 540 LADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLEAF---GTNV 595

Query: 810 NLHVLLINGN------MEIWKSM------------IERGRGFHRFSSLRQLTIMNCDDDM 851
            L  L ++ N       +                 ++         S+  +  ++   + 
Sbjct: 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655

Query: 852 VSFPPKADDKGSGTVLPLPASLTYL-----RIEGFPNLERLTSSIVDLQNLTGLVLGNCP 906
           +       +           + + +      I+ FP     T        ++ ++L N  
Sbjct: 656 IGSEG--RNISCSMDDYKGINASTVTLSYNEIQKFP-----TELFATGSPISTIILSNN- 707

Query: 907 KLKYFPE---KGLPSSLLQLS 924
            +   PE   K    +     
Sbjct: 708 LMTSIPENSLKPKDGNYKNTY 728

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.9 bits (119), Expect = 4e-06
 Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 13/117 (11%)

Query: 83  PKLLKLQSLRVFSLRGYRILELPDSV-GDLRYLRYLNLSGTEIRTLPESV--------SK 133
               K  +    +L    I + P  +      +  + LS   + ++PE+           
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 134 LYNLHSLLLEDCDRLEKLCADM--GNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188
            Y L ++ L    +L  L  D     L  L ++  S        P      + L+  
Sbjct: 727 TYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAF 781

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 1e-04
 Identities = 19/126 (15%), Positives = 45/126 (35%), Gaps = 9/126 (7%)

Query: 69  LSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPDSV--GDLRYLRYLNLSGTEIR 125
             ++       + L         +++F +    + E P S     +  L  L+    ++R
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586

Query: 126 TLPESVSKLYNLHSLLLEDCDRLEKLCADMG-NLVKLHHLKNSNTKSLEEMP--VGIGRL 182
            L         L  L L+   ++E++  D      ++  L  S+ K L+ +P       +
Sbjct: 587 HLEA-FGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSV 643

Query: 183 TCLQTL 188
             + ++
Sbjct: 644 YVMGSV 649

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 7e-04
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 10/73 (13%)

Query: 80  SMLPK-LLKLQSLRVFSLRGYRIL-------ELPDSVGDLRYLRYLNLSGTEIRTLPESV 131
           S  P   L    L+ F +R  R         + P  +     L  L +   +IR + E +
Sbjct: 766 SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL 825

Query: 132 SKLYNLHSLLLED 144
                L+ L + D
Sbjct: 826 --TPQLYILDIAD 836

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 6e-08
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 69  LSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSV-GDLRYLRYLNLSGTEIRTL 127
             +     ++P++   L ++ S+   +L+ +    +  +       L+ L+L+ T +  L
Sbjct: 235 FEDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293

Query: 128 PESVSKLYNLHSLLLEDCDRLEKLCADM-GNLVKLHHLK-NSNTKSLEEMPVGIGRLTCL 185
           P  +  L  L  L+L    + E LC     N   L HL    NTK LE     +  L  L
Sbjct: 294 PSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 186 QTL 188
           + L
Sbjct: 353 REL 355

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 71/429 (16%), Positives = 143/429 (33%), Gaps = 68/429 (15%)

Query: 527 LEYLRLSYCEGLVKLPQSSLS-LSSLREIEIYGCRSLVSFPEVALP--SKLKKIEISSCD 583
            E L  S+   L  +  ++ S L +L  +++  C+ +    E       +L  + +++  
Sbjct: 35  TECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANP 92

Query: 584 ALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLP--PSLKRLKICHCDNIRTLTVEE 641
            L  + E  +     +L+ L       ++ I  + L    +L+ L +    +I ++ + +
Sbjct: 93  -LIFMAETALSGP-KALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSN-HISSIKLPK 148

Query: 642 GIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNL------------- 688
           G             L+ L+  +  ++  +    E  ++L+     +L             
Sbjct: 149 GFPTEK--------LKVLDFQNN-AIHYL--SKEDMSSLQQATNLSLNLNGNDIAGIEPG 197

Query: 689 ---PPSLKLLLVWGCSKLESIAEMLDNNT--SLEKINISGCGNLQTLPSGLHNLCQLQEI 743
                  + L   G   L  I + L N+T  SL         +    P+    LC++   
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257

Query: 744 SIASCGNLVSSPEGGL--PCAKLAMLAIYNCKRLEALPKGLHNLKSLQEL-----RIGKG 796
           SI    +   +         + L  L +     L  LP GL  L +L++L     +    
Sbjct: 258 SINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFEN- 315

Query: 797 VALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPP 856
             L  +     P +L  L I GN +     +  G       +L  L  ++   D +    
Sbjct: 316 --LCQISASNFP-SLTHLSIKGNTKR--LELGTG----CLENLENLRELDLSHDDIETSD 366

Query: 857 KADDKGSGTVLPLPASLTYLRIEGFPN-LERLTS-SIVDLQNLTGLVLGNCPKLKYFPEK 914
             + +           L  L +    N    L + +  +   L  L L    +LK    +
Sbjct: 367 CCNLQLRNLS-----HLQSLNLSY--NEPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQ 418

Query: 915 GLPSSLLQL 923
               +L  L
Sbjct: 419 SPFQNLHLL 427

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 88  LQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESV-SKLYNLHSLLLEDCD 146
              L+   L    + ELP  +  L  L+ L LS  +   L +   S   +L  L ++   
Sbjct: 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336

Query: 147 RLEKLCADM-GNLVKLHHLK--NSNTKSLEEMPVGIGRLTCLQTL 188
           +  +L      NL  L  L   + + ++ +   + +  L+ LQ+L
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 83/549 (15%), Positives = 170/549 (30%), Gaps = 69/549 (12%)

Query: 88  LQSLRVFSLRGYRILELPDSV-GDLRYLRYLNLSGTEIRTLPESV-SKLYNLHSLLLEDC 145
           L +L    L   +I  + +        L  L L+   +  + E+  S    L  L     
Sbjct: 56  LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115

Query: 146 DRLEKLCADM-GNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTL----CSF-VVGKDSG 198
             +  +      N   L  L   +   +  + +        L+ L     +   + K+  
Sbjct: 116 -GISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173

Query: 199 SGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAET 258
           S L++   L     +L ++  +       A D+ + +  N         ++         
Sbjct: 174 SSLQQATNL-----SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228

Query: 259 EMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSV-GQL 317
            + +        + E            P          + ++  +         +     
Sbjct: 229 SLWLGTFE--DMDDEDI---------SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277

Query: 318 PSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFED--LQEWEDSIPHGSSQGVER 375
             L+ L +   + +  L S   G         L+ L       +    ++   S+     
Sbjct: 278 SGLQELDLTA-THLSELPSGLVG------LSTLKKLVLSANKFE----NLCQISASN--- 323

Query: 376 FPKLRELRILRCSKLKGTFPE---HLPALEML-----VIEGCEELLVSVSSLPALCKFII 427
           FP L  L I   +K          +L  L  L      IE  +   + + +L  L    +
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 428 SGCK-KVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKS 486
           S  +   +   A         +    T  +V  A      L  L+ L LS    + +  S
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS---HSLLDIS 440

Query: 487 HDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSL 546
            + L   + +L+ L ++           ++ +  Q L   LE L LS+C  L  + Q + 
Sbjct: 441 SEQLFDGLPALQHLNLQGN-HFPKGN-IQKTNSLQTL-GRLEILVLSFC-DLSSIDQHAF 496

Query: 547 S-LSSLREIEIYGCRSLVSFPEVALPSKLKKIEIS-SCDALKSLPEAWMCDTNSSLEILE 604
           + L  +  +++   R L S    AL S LK I ++ + + +  +  + +    S    + 
Sbjct: 497 TSLKMMNHVDLSHNR-LTSSSIEAL-SHLKGIYLNLASNHISIILPSLL-PILSQQRTIN 553

Query: 605 ISG----CD 609
           +      C 
Sbjct: 554 LRQNPLDCT 562

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.2 bits (125), Expect = 6e-07
 Identities = 82/508 (16%), Positives = 156/508 (30%), Gaps = 68/508 (13%)

Query: 90  SLRVFSLRGYRILELPDSV-GDLRYLRYLNLSGTEIRTLPESV-SKLYNLHSLLLEDCDR 147
              + ++    I EL  S    L  LR L +S   I+ L  SV      L  L L    +
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-K 80

Query: 148 LEKLCADMGNLVKLHHLK-NSNTKSLEEMPVG--IGRLTCLQTLCSFVVGKDSGSGLREL 204
           L K+       V L HL  + N  + + +P+    G ++ L+ L          S +  +
Sbjct: 81  LVKISCH--PTVNLKHLDLSFN--AFDALPICKEFGNMSQLKFL-GLSTTHLEKSSVLPI 135

Query: 205 KLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLD 264
             L   +  L +          + ED +  +  N + L + +     +    +  +  + 
Sbjct: 136 AHLNISKVLLVLGET-----YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190

Query: 265 MLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMC-TALPSVGQLPSLKHL 323
            L+  +N++                   +  KL  L   N +    +   + QL     +
Sbjct: 191 NLE-LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249

Query: 324 TVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELR 383
               +S VK L  +    D       L+ L    +       P         +     + 
Sbjct: 250 WYFSISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI-----YEIFSNMN 303

Query: 384 ILR--CSKLKGT---FPEHLPALEMLVIEGCE--ELLVSV-SSLPALCKFIISGCKKVVW 435
           I     S  +      P  +     L        + +      L  L   I+   +    
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363

Query: 436 ESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVC 495
                                +        Q+  L++L +S    +Y      G      
Sbjct: 364 SKIAE----------------MTT------QMKSLQQLDISQNSVSYD--EKKGDCSWTK 399

Query: 496 SLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIE 555
           SL SL + S   L   +          L   ++ L L   + +  +P+  + L +L+E+ 
Sbjct: 400 SLLSLNMSSN-ILTDTIFR-------CLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELN 450

Query: 556 IYGCRSLVSFPEVALPS--KLKKIEISS 581
           +   + L S P+        L+KI + +
Sbjct: 451 VASNQ-LKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 57/353 (16%), Positives = 120/353 (33%), Gaps = 43/353 (12%)

Query: 466 QLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYE 525
            + +L+ L LST             L     L  L        ++   +E+ +  Q    
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVL-------GETYGEKEDPEGLQDFNT 165

Query: 526 L-LEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVA-LPSKLKKIEISSCD 583
             L  +  +  E    L  S  ++++L    I              + +KL+     S  
Sbjct: 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225

Query: 584 ALKSLPEAWMCDT-------NSSLEILEISGCDSLTYIAGVQLP---PSLKRLKICHCDN 633
            L ++   W           ++++    IS       +          SLK L I    +
Sbjct: 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285

Query: 634 IRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGN-----L 688
                 +  I       +++  +++  +     +  +       +    L+  N      
Sbjct: 286 DVFGFPQSYIY----EIFSNMNIKNFTVSGTRMVHMLCPSK--ISPFLHLDFSNNLLTDT 339

Query: 689 P-------PSLKLLLVWGC--SKLESIAEMLDNNTSLEKINISGCGNLQTLPSGL-HNLC 738
                     L+ L++      +L  IAEM     SL++++IS          G      
Sbjct: 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399

Query: 739 QLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQEL 791
            L  ++++S   L  +    LP  ++ +L +++ K ++++PK +  L++LQEL
Sbjct: 400 SLLSLNMSSN-ILTDTIFRCLP-PRIKVLDLHSNK-IKSIPKQVVKLEALQEL 449

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 14/146 (9%)

Query: 684 EVGNLPPSLKLLLVWGCSKLESI-AEMLDNNTSLEKINISGCGNLQTLPSGL-HNLCQLQ 741
            + +LPPS + L +     L +I +    N  ++ +I +S    LQ L S   +NL ++ 
Sbjct: 25  RIPSLPPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83

Query: 742 EISIASCGNLVSSPEG---GLPCAKLAMLAIYNCKRLEALPKG--LHNLKSLQELRIGKG 796
            I I +  NL          LP   L  L I+N   L+  P    +++      L I   
Sbjct: 84  HIEIRNTRNLTYIDPDALKELP--LLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDN 140

Query: 797 VALPSLEED---GLPTNLHVLLINGN 819
             + S+  +   GL      L +  N
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNN 166

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 8e-07
 Identities = 89/603 (14%), Positives = 188/603 (31%), Gaps = 73/603 (12%)

Query: 85  LLKLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTLPESV-SKLYNLHSLLL 142
                 L+   L    I  +   +   L +L  L L+G  I++      S L +L +L+ 
Sbjct: 52  FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111

Query: 143 EDCDRLEKLCADM-GNLVKLHHLKNSNTKSLEEMPVG--IGRLTCLQTL--CSFVVGKDS 197
            +  +L  L +   G L+ L  L  ++   +    +      LT L  +      +   +
Sbjct: 112 VET-KLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169

Query: 198 GSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAE 257
            + L+ L+   Q+  +L +S    +  I D     +     L EL L        +  + 
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLN-PIDFIQDQAFQGI----KLHELTL------RGNFNSS 218

Query: 258 TEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQL 317
             M          ++ +  +  +   +       S    L  +      +     +    
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL-----TYTND 273

Query: 318 PSLKHLTVRGMSKVKRL---GSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVE 374
            S   +    ++ V  +   G      +      + ++L     Q      P        
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQ--LKQFPTLD----- 326

Query: 375 RFPKLRELRILRCSKLKGTFPE-HLPALEML-----VIEGCEELLVSVSSLPALCKFIIS 428
             P L+ L  L  +K   +F +  LP+L  L      +        S     +L    +S
Sbjct: 327 -LPFLKSLT-LTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384

Query: 429 GCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHD 488
               ++  +    L     +  + ++ +          L KL  L +S    T      D
Sbjct: 385 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS---YTNTKIDFD 441

Query: 489 GLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLS- 547
           G+   + SL +L++       + ++    +        L +L LS C  L ++       
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN-----LTFLDLSKC-QLEQISWGVFDT 495

Query: 548 LSSLREIEIYGCRSLVSFPEVALP--SKLKKIEISSCDALKSLPEAWMCDTNSSLEILEI 605
           L  L+ + +     L+            L  ++ S    +++           SL    +
Sbjct: 496 LHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQ-HFPKSLAFFNL 552

Query: 606 SG----CDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEI 661
           +     C         +    L+ +K    +  + L   E + C++     +SL+     
Sbjct: 553 TNNSVACIC-------EHQKFLQWVK----EQKQFLVNVEQMTCATPVEMNTSLVLDFNN 601

Query: 662 YSC 664
            +C
Sbjct: 602 STC 604

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 4e-06
 Identities = 80/404 (19%), Positives = 130/404 (32%), Gaps = 54/404 (13%)

Query: 466 QLPKLEELILS-TKEQTYIWKSHDGLLQ--DVCSLKSLEIRSCPKLQSLVAEEEKDQQQQ 522
           Q  KL EL L      + I K+    L    V  L   E +    L+      E    + 
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF----EPSIMEG 257

Query: 523 LYEL-LEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISS 581
           L ++ ++  RL+Y             L+++  + + G  S+    +V    K + + I  
Sbjct: 258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIR 316

Query: 582 CDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEE 641
           C  LK  P   +      L+ L ++          V LP SL  L +             
Sbjct: 317 CQ-LKQFPTLDL----PFLKSLTLTMNKGSISFKKVALP-SLSYLDLSRNAL-------S 363

Query: 642 GIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCS 701
              C S     ++ L HL++          S N     + S     L   L+ L     S
Sbjct: 364 FSGCCSYSDLGTNSLRHLDL----------SFNGA--IIMSANFMGLE-ELQHLDF-QHS 409

Query: 702 KLESIAE--MLDNNTSLEKINISGCGNLQTLPSG-LHNLCQLQEISIASCGNLVSSPEGG 758
            L+ + E     +   L  ++IS   N +    G    L  L  + +A      ++    
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 759 L-PCAKLAMLAIYNCKRLEALPKG-LHNLKSLQELRIGKGVALPSLEEDGLP--TNLHVL 814
                 L  L +  C+ LE +  G    L  LQ L +     L  L+        +L  L
Sbjct: 469 FANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMS-HNNLLFLDSSHYNQLYSLSTL 526

Query: 815 LINGNMEIWKSMIERGRGFHRFSSLRQLTIMN----CDDDMVSF 854
             + N  I     +     H   SL    + N    C  +   F
Sbjct: 527 DCSFN-RI--ETSKGI-LQHFPKSLAFFNLTNNSVACICEHQKF 566

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 14/155 (9%)

Query: 38  HLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLR 97
            L+  +G      +   L  + +L       LS +   +         L   SLR   L 
Sbjct: 334 TLTMNKGSISF--KKVALPSLSYLD------LSRNALSFSGCCSY-SDLGTNSLRHLDLS 384

Query: 98  GYRILELPDSVGDLRYLRYLNLSGTEIRTLPE--SVSKLYNLHSLLLEDCDRLEKLCADM 155
               + +  +   L  L++L+   + ++ + E  +   L  L  L +      +     +
Sbjct: 385 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGI 443

Query: 156 -GNLVKLHHLK-NSNTKSLEEMPVGIGRLTCLQTL 188
              L  L+ LK   N+     +       T L  L
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.6 bits (124), Expect = 9e-07
 Identities = 55/287 (19%), Positives = 103/287 (35%), Gaps = 39/287 (13%)

Query: 663 SCPSL-TCIFSKNELPATLESLEV--GNLPPSLKLLLVWGCSKLESI-AEMLDNNTSLEK 718
            CP    C      +    +        +P   +LL +    +++++  +   +   LE+
Sbjct: 2   GCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKN-RIKTLNQDEFASFPHLEE 60

Query: 719 INISGCGNLQTLPSG-LHNLCQLQEISIASCGNLVSSPEG---GLPCAKLAMLAIYNCKR 774
           + ++    +  +  G  +NL  L+ + + S   L   P G   GL    L  L I    +
Sbjct: 61  LELNEN-IVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLS--NLTKLDISEN-K 115

Query: 775 LEALPKGL-HNLKSLQELRIGKGVALPSLEED---GLPTNLHVLLINGNMEIWKSMIERG 830
           +  L   +  +L +L+ L +G    L  +      GL  +L  L +     +  + I   
Sbjct: 116 IVILLDYMFQDLYNLKSLEVG-DNDLVYISHRAFSGLN-SLEQLTLEKC-NL--TSIPTE 170

Query: 831 RGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSS 890
                   L  L + + + + +            +   L   L  L I  +P L+ +T +
Sbjct: 171 -ALSHLHGLIVLRLRHLNINAIR---------DYSFKRLY-RLKVLEISHWPYLDTMTPN 219

Query: 891 IVDLQNLTGLVLGNCPKLKYFPE---KGLPS-SLLQLSINRCPLIEE 933
            +   NLT L + +C  L   P    + L     L LS N    IE 
Sbjct: 220 CLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 15/141 (10%)

Query: 52  FGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSV-GD 110
           F  LY ++ L       +S+              L L SL   S+    +  +P      
Sbjct: 196 FKRLYRLKVLE------ISHWPYLDTMTPNCLYGLNLTSL---SITHCNLTAVPYLAVRH 246

Query: 111 LRYLRYLNLSGTEIRTLPESV-SKLYNLHSLLLEDCDRLEKLCADM-GNLVKLHHLKNSN 168
           L YLR+LNLS   I T+  S+  +L  L  + L    +L  +       L  L  L  S 
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSG 305

Query: 169 TKSLEEMPVGI-GRLTCLQTL 188
            + L  +   +   +  L+TL
Sbjct: 306 NQ-LTTLEESVFHSVGNLETL 325

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 81/421 (19%), Positives = 132/421 (31%), Gaps = 110/421 (26%)

Query: 532 LSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALP-SKLKKIEISSCDALKSLPE 590
           L +   L ++P  + ++ S  E          + P       ++    +  C        
Sbjct: 17  LRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-------- 68

Query: 591 AWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLK--ICHCDNIRTLTVEEGIQCSSG 648
                 +     LE++    L+      LP     L+  +  C+++  L           
Sbjct: 69  -----LDRQAHELELNNL-GLS-----SLPELPPHLESLVASCNSLTEL----------- 106

Query: 649 RRYTSSLLEHLEIYSCPSLTCIF-SKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIA 707
                         S  SL     +   L          +LPP L+ L V    +LE + 
Sbjct: 107 ---------PELPQSLKSLLVDNNNLKALS---------DLPPLLEYLGVSNN-QLEKLP 147

Query: 708 EMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAML 767
           E L N++ L+ I++    +L+ LP    +L  +     A    L   PE       L  +
Sbjct: 148 E-LQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIA----AGNNQLEELPELQ-NLPFLTAI 200

Query: 768 AIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGN-MEIWKSM 826
              N   L+ LP    +L+S+          LP L        L  +  + N ++    +
Sbjct: 201 YADNNS-LKKLPDLPLSLESI-VAGNNILEELPEL---QNLPFLTTIYADNNLLKTLPDL 255

Query: 827 IERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLP-LPASLTYLRI------- 878
                      SL  L + +                  T LP LP SLT+L +       
Sbjct: 256 P---------PSLEALNVRDN---------------YLTDLPELPQSLTFLDVSENIFSG 291

Query: 879 --EGFPNLERL-------TSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCP 929
             E  PNL  L        S      +L  L + N  KL   P   LP  L +L  +   
Sbjct: 292 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPA--LPPRLERLIASFNH 348

Query: 930 L 930
           L
Sbjct: 349 L 349

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 40/167 (23%)

Query: 82  LPKLLKLQSLRVFSLRGYRILELPDS-------------------VGDLRYLRYLNLSGT 122
           LP+L  L  L         + +LPD                    + +L +L  +     
Sbjct: 188 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 247

Query: 123 EIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRL 182
            ++TLP+      +L +L + D   L  L     +L  L   +N  +  L E+P  +  L
Sbjct: 248 LLKTLPDLPP---SLEALNVRDN-YLTDLPELPQSLTFLDVSENIFS-GLSELPPNLYYL 302

Query: 183 TC----LQTLCSFVVGKDSGSGLRELKL----LTQLRGTLCISNLEN 221
                 +++LC           L EL +    L +L        LE 
Sbjct: 303 NASSNEIRSLCDLP------PSLEELNVSNNKLIELPALPP--RLER 341

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 29/120 (24%), Positives = 43/120 (35%), Gaps = 19/120 (15%)

Query: 80  SMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLY---- 135
             LP+L  L  L         +  LPD    L  L   +   T++  LP+S++ L     
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 287

Query: 136 ----------NLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCL 185
                     NL+ L       +  LC    +L +L+   N     L E+P    RL  L
Sbjct: 288 IFSGLSELPPNLYYLNASSN-EIRSLCDLPPSLEELNVSNN----KLIELPALPPRLERL 342

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 78/334 (23%), Positives = 124/334 (37%), Gaps = 65/334 (19%)

Query: 463 LKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQ 522
           L    P LE L+ S    T + +          SLKSL + +   L++L           
Sbjct: 86  LPELPPHLESLVASCNSLTELPEL-------PQSLKSLLVDNN-NLKAL---------SD 128

Query: 523 LYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSC 582
           L  LLEYL +S  + L KLP    + S L+ I++     L   P+  LP  L+ I   + 
Sbjct: 129 LPPLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNS-LKKLPD--LPPSLEFIAAGNN 183

Query: 583 DALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEG 642
             L+ LPE         L  +      SL      +LP     L+     N     + E 
Sbjct: 184 Q-LEELPELQNL---PFLTAIYADNN-SLK-----KLPDLPLSLESIVAGNNILEELPEL 233

Query: 643 IQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGN--------LPPSLKL 694
                        L  +   +   L  +    +LP +LE+L V +        LP SL  
Sbjct: 234 QNLPF--------LTTIYADNN-LLKTL---PDLPPSLEALNVRDNYLTDLPELPQSLTF 281

Query: 695 LLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSS 754
           L V        ++E+  N   L  +N S    +++L     +L   +E+++++   L+  
Sbjct: 282 LDVSENI-FSGLSELPPN---LYYLNASSN-EIRSLCDLPPSL---EELNVSNN-KLIEL 332

Query: 755 PEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSL 788
           P       +L  L       L  +P+   NLK L
Sbjct: 333 PAL---PPRLERLIASFN-HLAEVPELPQNLKQL 362

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 50/274 (18%), Positives = 83/274 (30%), Gaps = 61/274 (22%)

Query: 687 NLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIA 746
           N+  +     +   S L  +    +N  S  +   +     +  P G     ++    + 
Sbjct: 7   NVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 747 SCG------------NLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIG 794
            C              L S PE       L  L       L  LP+   +LKSL      
Sbjct: 67  DCLDRQAHELELNNLGLSSLPEL---PPHLESLVASCNS-LTELPELPQSLKSLLVDNN- 121

Query: 795 KGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSF 854
              AL       LP  L  L ++ N ++ K             +   L I++ D++ +  
Sbjct: 122 NLKALSD-----LPPLLEYLGVSNN-QLEK--------LPELQNSSFLKIIDVDNNSLKK 167

Query: 855 PPKADDKGSGTVLPLPASLTYL-----RIEGFPNLE-------------RLTSSIVDLQN 896
            P            LP SL ++     ++E  P L+              L        +
Sbjct: 168 LPD-----------LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLS 216

Query: 897 LTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPL 930
           L  +V GN   L+  PE      L  +  +   L
Sbjct: 217 LESIVAGNN-ILEELPELQNLPFLTTIYADNNLL 249

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 88  LQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDR 147
              L         + ELP+    L+ L   N +   +  LP        L  L + +  +
Sbjct: 90  PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP------LLEYLGVSNN-Q 142

Query: 148 LEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCL 185
           LEKL  ++ N   L  +   N   L+++P     L  +
Sbjct: 143 LEKL-PELQNSSFLKIIDVDNNS-LKKLPDLPPSLEFI 178

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.5 bits (120), Expect = 2e-06
 Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 16/163 (9%)

Query: 82  LPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLL 141
                +L S+         I  +   +  L  +  L L+G ++  + + ++ L NL  L 
Sbjct: 36  AVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLF 93

Query: 142 LEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGL 201
           L++  +++ L + + +L KL  L   +   + ++  G+  L  L++L    +G +  + +
Sbjct: 94  LDEN-KIKDLSS-LKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLY---LGNNKITDI 146

Query: 202 RELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWL 244
             L  LT+L  TL + +  N   I D     L     L+ L+L
Sbjct: 147 TVLSRLTKLD-TLSLED--N--QISDIVP--LAGLTKLQNLYL 182

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 2e-04
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 80  SMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHS 139
           + +  L +L  L   SL   +I ++   +  L  L+ L LS   I  L  +++ L NL  
Sbjct: 144 TDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDV 201

Query: 140 LLLEDCDRLEKLCADMGNLVKLHHLKNSNTK 170
           L L   + L K      NLV  + +KN++  
Sbjct: 202 LELFSQECLNKPINHQSNLVVPNTVKNTDGS 232

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 9e-04
 Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 14/160 (8%)

Query: 85  LLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLED 144
           L  L++L    L   +I +L  S+ DL+ L+ L+L    I  +   +  L  L SL L +
Sbjct: 83  LTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGN 140

Query: 145 CDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLREL 204
             ++  +   +  L KL  L   + + + ++   +  LT LQ L    + K+  S LR L
Sbjct: 141 N-KITDI-TVLSRLTKLDTLSLEDNQ-ISDIV-PLAGLTKLQNL---YLSKNHISDLRAL 193

Query: 205 KLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWL 244
             L  L   L + +    +  ++              +  
Sbjct: 194 AGLKNLD-VLELFS----QECLNKPINHQSNLVVPNTVKN 228

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 12/151 (7%)

Query: 701 SKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGL- 759
           S     ++     TSL+ +++S    + T+ S    L QL+ +      NL    E  + 
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVF 122

Query: 760 -PCAKLAMLAIYNCKRLEALPKG-LHNLKSLQELRIGKGVALPSLEEDGLP--TNLHVLL 815
                L  L I +         G  + L SL+ L++       +   D      NL  L 
Sbjct: 123 LSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 816 INGNMEIWKSMIERGRGFHRFSSLRQLTIMN 846
           ++   ++    +     F+  SSL+ L + +
Sbjct: 182 LSQC-QL--EQLSPT-AFNSLSSLQVLNMSH 208

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 69  LSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLP 128
           L ++K   L   +  KL +L  L + S           S      L+YL+LS   + T+ 
Sbjct: 35  LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 94

Query: 129 ESVSKLYNLHSLLLEDCDRLEKLCADM--GNLVKLHHLKNSNTKSLEEMPVGI-GRLTCL 185
            +   L  L  L  +    L+++       +L  L +L  S+T        GI   L+ L
Sbjct: 95  SNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSL 152

Query: 186 QTL 188
           + L
Sbjct: 153 EVL 155

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 20/109 (18%), Positives = 50/109 (45%), Gaps = 5/109 (4%)

Query: 80  SMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHS 139
           S +  L  L  +   +L     L     + ++  L YL ++ ++++ +   ++ L +L+S
Sbjct: 123 SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYS 181

Query: 140 LLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188
           L L    ++E +   + +L  LH+      + + ++   +  +T L +L
Sbjct: 182 LSLNYN-QIEDISP-LASLTSLHYFTAYVNQ-ITDIT-PVANMTRLNSL 226

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 1e-05
 Identities = 47/357 (13%), Positives = 121/357 (33%), Gaps = 58/357 (16%)

Query: 466 QLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYE 525
           +L  + +L+++ ++   I       L    +L+ L +    ++  +           L  
Sbjct: 42  ELESITKLVVAGEKVASI--QGIEYLT---NLEYLNLNGN-QITDISP---------LSN 86

Query: 526 L--LEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCD 583
           L  L  L +   + +  +     +L++LRE+ +     +     +A  +K+  + + +  
Sbjct: 87  LVKLTNLYIGTNK-ITDISALQ-NLTNLRELYLNEDN-ISDISPLANLTKMYSLNLGANH 143

Query: 584 ALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGI 643
            L  L         + L  L ++    +  +  +     L  L + +   I  ++     
Sbjct: 144 NLSDLSPL---SNMTGLNYLTVTES-KVKDVTPIANLTDLYSLSLNYN-QIEDIS----- 193

Query: 644 QCSSGRRYTSSLLEHLEIYSCPSLTCIF-SKNELPATLESLEVGNLPPSLKLLLVWGCSK 702
                            + S  SL       N++   +  +   N+   L  L +    K
Sbjct: 194 ----------------PLASLTSLHYFTAYVNQI-TDITPV--ANMT-RLNSLKIGNN-K 232

Query: 703 LESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCA 762
           +  ++  L N + L  + I    N  +  + + +L +L+ +++ S  N +S        +
Sbjct: 233 ITDLSP-LANLSQLTWLEIGT--NQISDINAVKDLTKLKMLNVGS--NQISDISVLNNLS 287

Query: 763 KLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGN 819
           +L  L + N +      + +  L +L  L +     +  +      + +        
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS-QNHITDIRPLASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.8 bits (107), Expect = 9e-05
 Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 5/109 (4%)

Query: 80  SMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHS 139
           + +  L  L  L    +   +I ++  ++ +L  LR L L+   I  +   ++ L  ++S
Sbjct: 79  TDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDIS-PLANLTKMYS 136

Query: 140 LLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188
           L L          + + N+  L++L  + +K ++++   I  LT L +L
Sbjct: 137 LNLGAN-HNLSDLSPLSNMTGLNYLTVTESK-VKDVT-PIANLTDLYSL 182

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 31/163 (19%), Positives = 69/163 (42%), Gaps = 15/163 (9%)

Query: 82  LPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLL 141
           +     L       L+   + ++  +  +L  +  L ++G ++ ++   +  L NL  L 
Sbjct: 15  IFPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASIQG-IEYLTNLEYLN 72

Query: 142 LEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGL 201
           L    ++  + + + NLVKL +L     K + ++   +  LT L+ L    + +D+ S +
Sbjct: 73  LNGN-QITDI-SPLSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELY---LNEDNISDI 125

Query: 202 RELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWL 244
             L  LT++  +L +    N+  +     + L     L  L +
Sbjct: 126 SPLANLTKMY-SLNLGANHNLSDL-----SPLSNMTGLNYLTV 162

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 4e-04
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 80  SMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHS 139
           + +  +  +  L    +   +I +L   + +L  L +L +   +I  +  +V  L  L  
Sbjct: 212 TDITPVANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDIN-AVKDLTKLKM 269

Query: 140 LLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188
           L +    ++  +   + NL +L+ L  +N +   E    IG LT L TL
Sbjct: 270 LNVGSN-QISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 3e-06
 Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 10/156 (6%)

Query: 35  YLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVF 94
            +R L  +  + + +Q F  L  +  +R      L +              ++   +RV 
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS----KFLLENSVLKMEYADVRVL 446

Query: 95  SLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCAD 154
            L    +  L   +  L  + +L+LS   +R LP +++ L  L  L   D   LE +   
Sbjct: 447 HLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENV-DG 503

Query: 155 MGNLVKLHHLKNSNTK--SLEEMPVGIGRLTCLQTL 188
           + NL +L  L   N +      +   +     L  L
Sbjct: 504 VANLPRLQELLLCNNRLQQSAAIQP-LVSCPRLVLL 538

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 50/373 (13%), Positives = 102/373 (27%), Gaps = 46/373 (12%)

Query: 474 ILSTKEQTYIWKSHDGLLQDVC--SLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLR 531
           +L   E   +        ++ C     S  +    ++ +L+   ++      +   +   
Sbjct: 235 LLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRN 294

Query: 532 LSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEA 591
                 L  LP +SL+    +           S  E  L     +         + L   
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRC 354

Query: 592 WMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRY 651
            +    S++   E+  C  L  +        L    I     +  L  E+          
Sbjct: 355 ELSVEKSTVLQSELESCKELQELEPENKWCLLT--IILLMRALDPLLYEKET-------- 404

Query: 652 TSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLD 711
                  L+         +           S+          L L      L  +   L+
Sbjct: 405 -LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL--AHKDLTVL-CHLE 460

Query: 712 NNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYN 771
               +  +++S    L+ LP  L  L  L+ +  +                         
Sbjct: 461 QLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN----------------------- 496

Query: 772 CKRLEALPKGLHNLKSLQELRIG--KGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIER 829
              LE +  G+ NL  LQEL +   +     +++       L +L + GN  + +    +
Sbjct: 497 --ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQ 552

Query: 830 GRGFHRFSSLRQL 842
            R      S+  +
Sbjct: 553 ERLAEMLPSVSSI 565

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 34/236 (14%), Positives = 74/236 (31%), Gaps = 58/236 (24%)

Query: 533 SYCEGL--VKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEIS---SCDALKS 587
            YC  L    L ++ ++         +    +     V LP  LK+I          LK+
Sbjct: 177 YYCYNLKKADLSKTKITKL---PASTFVYAGIEE---VLLPVTLKEIGSQAFLKTSQLKT 230

Query: 588 --LPEAWMCDTNSSLEILEI---SGCDSLTYIAGVQLPPSLKRLKIC---HCDNIRTLTV 639
             +P         ++  +          +T +   +LP  +  +      +C  +  +T 
Sbjct: 231 IEIP--------ENVSTIGQEAFRES-GITTV---KLPNGVTNIASRAFYYCPELAEVT- 277

Query: 640 EEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWG 699
                 S+      +++    +  CP L       E+P ++  L  G L          G
Sbjct: 278 ---TYGSTFNDDPEAMIHPYCLEGCPKLARF----EIPESIRILGQGLL---------GG 321

Query: 700 CSKLESIA-----EMLDN----NTSLEKINISGCGNLQTLPSGLHNLCQ-LQEISI 745
             K+  +        ++     NT ++++ + G    Q      +     +  I +
Sbjct: 322 NRKVTQLTIPANVTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV 377

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 37/346 (10%), Positives = 81/346 (23%), Gaps = 118/346 (34%)

Query: 555 EIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYI 614
           E        + P   + + L+   I                   +  I  +     LT +
Sbjct: 4   EYKKDSPSAANPVEPIGASLEDFSIEQL---------------PAKTIYALGENIDLTGL 48

Query: 615 -------AGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLE------- 660
                   G Q P  +   +I    +   +  +E      G++ + S+            
Sbjct: 49  NVTGKYDDGKQRPVKVTSEQISGFSSSVPVDKQEVTITIEGKQKSFSVHISPVRVENGVL 108

Query: 661 IYSCPSLTCI-------------FSKNEL-----PATLESLEVG----------NLPPSL 692
                    I             F  +++        L+S+               P +L
Sbjct: 109 TEILKGYNEIILPNSVKSIPKDAFRNSQIAKVVLNEGLKSIGDMAFFNSTVQEIVFPSTL 168

Query: 693 KLLLVW---GCSKLESI----------AEMLDNNTSLEKINI------------SGCGNL 727
           + L       C  L+                     +E++ +                 L
Sbjct: 169 EQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQL 228

Query: 728 Q--TLPSGLHNL-------CQLQEISI------------ASCGNLVS-----SPEGGLPC 761
           +   +P  +  +         +  + +              C  L       S     P 
Sbjct: 229 KTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPE 288

Query: 762 AKLAMLAIYNCKRLEA--LPKGL--------HNLKSLQELRIGKGV 797
           A +    +  C +L    +P+ +           + + +L I   V
Sbjct: 289 AMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPANV 334

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 26/158 (16%), Positives = 60/158 (37%), Gaps = 11/158 (6%)

Query: 87  KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCD 146
           ++ SL   +L    + +L   +     ++ L ++          +S L NL  L +   D
Sbjct: 42  QMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKD 99

Query: 147 RLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKL 206
                  ++  L  L  L  S++   + +   I  L  + ++   +    + + +  LK 
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI--DLSYNGAITDIMPLKT 157

Query: 207 LTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWL 244
           L +L+ +L I    +   + D     ++    L +L+ 
Sbjct: 158 LPELK-SLNIQF--D--GVHDYRG--IEDFPKLNQLYA 188

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCG 749
            +L+ L + G          L   TSL  ++IS   +  ++ + ++ L ++  I ++  G
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 750 NLVS-SPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIG 794
            +    P   LP  +L  L I     +    +G+ +   L +L   
Sbjct: 148 AITDIMPLKTLP--ELKSLNIQFDG-VHDY-RGIEDFPKLNQLYAF 189

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 48/318 (15%), Positives = 87/318 (27%), Gaps = 68/318 (21%)

Query: 474 ILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLS 533
            L           H  +   + S   +  R           E     +     ++++ LS
Sbjct: 47  SLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-----VQHMDLS 101

Query: 534 YCEGLVK-LPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAW 592
                V  L       S L+ + + G R                    S   + +L +  
Sbjct: 102 NSVIEVSTLHGILSQCSKLQNLSLEGLRL-------------------SDPIVNTLAK-- 140

Query: 593 MCDTNSSLEILEISGCDSLT-----YIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSS 647
               NS+L  L +SGC   +      +        L  L +  C +     V+  +    
Sbjct: 141 ----NSNLVRLNLSGCSGFSEFALQTLL--SSCSRLDELNLSWCFDFTEKHVQVAVAHV- 193

Query: 648 GRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNL----------------PPS 691
                S  +  L +            + L     +L   +L                   
Sbjct: 194 -----SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248

Query: 692 LKLLLVWGCSKLESIA-EMLDNNTSLEKINISGC---GNLQTLPSGLHNL----CQLQEI 743
           L+ L +  C  +       L    +L+ + + G    G LQ L   L +L         I
Sbjct: 249 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTI 308

Query: 744 SIASCGNLVSSPEGGLPC 761
           +  + GN  +    G+ C
Sbjct: 309 ARPTIGNKKNQEIWGIKC 326

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 39/277 (14%), Positives = 87/277 (31%), Gaps = 71/277 (25%)

Query: 376 FPKLRELRILRCSKLKGT---FPEHLPALEMLVIEGCE---ELLVSVSSLPALCKFIISG 429
             +++ + +        T          L+ L +EG      ++ +++    L +  +SG
Sbjct: 92  PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151

Query: 430 CKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDG 489
           C                     + + Q  L+        +L+EL LS     + +   + 
Sbjct: 152 CSGF-----------------SEFALQTLLSS-----CSRLDELNLS-----WCFDFTEK 184

Query: 490 LLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVK---LPQSSL 546
            +Q   +           +                     L LS     ++   L     
Sbjct: 185 HVQVAVA------HVSETITQ-------------------LNLSGYRKNLQKSDLSTLVR 219

Query: 547 SLSSLREIEIYGCRSL--VSFPEVALPSKLKKIEISSCDAL--KSLPEAWMCDTNSSLEI 602
              +L  +++     L    F E    + L+ + +S C  +  ++L E        +L+ 
Sbjct: 220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI---PTLKT 276

Query: 603 LEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTV 639
           L++ G      +    L  +L  L+I +C +  T+  
Sbjct: 277 LQVFGIVPDGTLQ--LLKEALPHLQI-NCSHFTTIAR 310

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNL--QTLPSGLHNLCQLQEISIAS 747
             L+ L + G    + I   L  N++L ++N+SGC       L + L +  +L E++++ 
Sbjct: 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177

Query: 748 CGNLVSSPEGGL---PCAKLAMLAIYNCKR------LEALPKGLHNLKSL 788
           C +                +  L +   ++      L  L +   NL  L
Sbjct: 178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 33/245 (13%), Positives = 62/245 (25%), Gaps = 63/245 (25%)

Query: 533 SYCEGL--VKLPQSSLSLSSLREIEI---YGCRSLVSFPEVALPSKLKKIEISS--CDAL 585
              + L  V L         ++ IE     GC +L       +  K     +     D++
Sbjct: 98  KGKQTLEKVILS------EKIKNIEDAAFKGCDNLKI---CQIRKKTAPNLLPEALADSV 148

Query: 586 KS----LPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLK---ICHCDNIRTLT 638
            +    L  +      +  E       + L          ++ +L+   +      R + 
Sbjct: 149 TAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETT---IQVGAMGKLEDEIMKAGLQPRDIN 205

Query: 639 VEE-----GIQCSSGRRYTSSLLEHLEI-------------YSCPSLTCIFSKNELPATL 680
                           R     L  L+I                  L  I    +LP  L
Sbjct: 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI----KLPHNL 261

Query: 681 ESLEVG------------NLPPSLKLLLVW---GCSKLESIAEMLDNNTSLEKINISGCG 725
           +++                LP S+  +      GC  L  +    D  T+L         
Sbjct: 262 KTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV 321

Query: 726 NLQTL 730
             + +
Sbjct: 322 PSKLI 326

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 58/321 (18%), Positives = 111/321 (34%), Gaps = 68/321 (21%)

Query: 523 LYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSC 582
            Y  +      Y     K  + +L   +  E         VS  +  L ++  +++++  
Sbjct: 18  FYNTISGTYADYFSAWDKWEKQALPGENRNE--------AVSLLKECLINQFSELQLNRL 69

Query: 583 DALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEG 642
           + L SLP+    +    + +LEI+   +L       LP     L+     + R  T+ E 
Sbjct: 70  N-LSSLPD----NLPPQITVLEITQN-ALI-----SLPELPASLEYLDACDNRLSTLPEL 118

Query: 643 IQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGN--------LPPSLKL 694
                        L+HL++ +   LT +    ELPA LE +   N        LP SL++
Sbjct: 119 PAS----------LKHLDVDNNQ-LTML---PELPALLEYINADNNQLTMLPELPTSLEV 164

Query: 695 LLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSS 754
           L V    +L  + E+ ++   LE +++S    L++LP+        +E            
Sbjct: 165 LSVRNN-QLTFLPELPES---LEALDVSTN-LLESLPAVPVRNHHSEET----------- 208

Query: 755 PEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVL 814
                              R+  +P+ + +L     + +     L S   + L       
Sbjct: 209 ---------EIFFRCREN-RITHIPENILSLDPTCTIILE-DNPLSSRIRESLSQQTAQP 257

Query: 815 LINGNMEIWKSMIERGRGFHR 835
             +G    +     +    HR
Sbjct: 258 DYHGPRIYFSMSDGQQNTLHR 278

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 38/140 (27%)

Query: 82  LPKLLKLQSLRVFSLRGYRILELPDSVGDLRYL-----------------RYLNLSGTEI 124
           LP  L    + V  +    ++ LP+    L YL                 ++L++   ++
Sbjct: 74  LPDNL-PPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQL 132

Query: 125 RTLPESVSKLYNLH------SLLLEDCDRLEKLCAD----------MGNLVKLHHLKNSN 168
             LPE  + L  ++      ++L E    LE L               +L  L    N  
Sbjct: 133 TMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTN-- 190

Query: 169 TKSLEEMPVGIGRLTCLQTL 188
              LE +P    R    +  
Sbjct: 191 --LLESLPAVPVRNHHSEET 208

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 2e-04
 Identities = 17/122 (13%), Positives = 32/122 (26%), Gaps = 8/122 (6%)

Query: 65  LPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEI 124
           L      +              K +   +        + L      +     L L+   +
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNL 71

Query: 125 RTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTC 184
            +LP+++     +  L +     L  L     +L  L    N     L  +P     L  
Sbjct: 72  SSLPDNLPP--QITVLEITQN-ALISLPELPASLEYLDACDN----RLSTLPELPASLKH 124

Query: 185 LQ 186
           L 
Sbjct: 125 LD 126

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 12/114 (10%)

Query: 52  FGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDL 111
             +   +  +       LS ++   +      K+ +L+ L    +   R++ L      +
Sbjct: 250 LLNYPGLVEVD------LSYNELEKIMYHPFVKMQRLERLY---ISNNRLVALNLYGQPI 300

Query: 112 RYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLK 165
             L+ L+LS   +  +  +  +   L +L L+    +  L   +     L +L 
Sbjct: 301 PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTL--KLSTHHTLKNLT 351

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 5e-05
 Identities = 58/372 (15%), Positives = 127/372 (34%), Gaps = 55/372 (14%)

Query: 452 DTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSL 511
           D   Q    G     L   + +         +      LL     ++ L +    +++ +
Sbjct: 35  DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL---PAALLDSFRQVELLNLNDL-QIEEI 90

Query: 512 VAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLS-LSSLREIEIYGCRSLVSFPEVAL 570
                          ++ L + +   +  LP      +  L  + +     L S P    
Sbjct: 91  DTYAFAYAHT-----IQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIF 143

Query: 571 P--SKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKI 628
               KL  + +S+   L+ + +     T +SL+ L++S    LT++  + L PSL    +
Sbjct: 144 HNTPKLTTLSMSNN-NLERIEDDTFQAT-TSLQNLQLSSN-RLTHVD-LSLIPSLFHANV 199

Query: 629 CHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNL 688
            +   + TL                  +E L+     S+  +  +  +   L  L++ + 
Sbjct: 200 SYN-LLSTLA-------------IPIAVEELDASHN-SINVV--RGPVNVELTILKLQHN 242

Query: 689 PPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSG-LHNLCQLQEISIAS 747
                         L   A  L N   L ++++S    L+ +       + +L+ + I++
Sbjct: 243 -------------NLTDTA-WLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISN 287

Query: 748 CGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGL 807
              LV+    G P   L +L + +   L  + +       L+ L +    ++ +L+    
Sbjct: 288 N-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLD-HNSIVTLKLSTH 344

Query: 808 PTNLHVLLINGN 819
              L  L ++ N
Sbjct: 345 H-TLKNLTLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 35/155 (22%), Positives = 54/155 (34%), Gaps = 15/155 (9%)

Query: 38  HLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLR 97
           H+     D         L + + +         NS    L  ++L    +++ L    L 
Sbjct: 33  HIDMQTQDVYFGFEDITLNNQKIVT------FKNSTMRKLPAALLDSFRQVELLN---LN 83

Query: 98  GYRILELPDSV-GDLRYLRYLNLSGTEIRTLPESV-SKLYNLHSLLLEDCDRLEKLCADM 155
             +I E+          ++ L +    IR LP  V   +  L  L+LE    L  L   +
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGI 142

Query: 156 -GNLVKLHHLKNSNTKSLEEMPVGIGR-LTCLQTL 188
             N  KL  L  SN   LE +     +  T LQ L
Sbjct: 143 FHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNL 176

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 4/102 (3%)

Query: 88  LQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESV-SKLYNLHSLLLEDCD 146
              L +  L+   + +    + +   L  ++LS  E+  +      K+  L  L + +  
Sbjct: 231 NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN- 288

Query: 147 RLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188
           RL  L      +  L  L  S+   L  +     +   L+ L
Sbjct: 289 RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENL 329

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 87  KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCD 146
           K+Q L    +   R++ L      +  L+ L+LS   +  +  +  +   L +L L+   
Sbjct: 270 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN- 328

Query: 147 RLEKLCADMGNLVKLHHLK 165
            +  L   +     L +L 
Sbjct: 329 SIVTL--KLSTHHTLKNLT 345

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 56/381 (14%), Positives = 119/381 (31%), Gaps = 73/381 (19%)

Query: 452 DTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSL 511
           D   Q    G     L   + +         +      LL     ++ L +    +++ +
Sbjct: 29  DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL---PAALLDSFRQVELLNLNDL-QIEEI 84

Query: 512 VAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLS-LSSLREIEIYGCRSLVSFPEVAL 570
                          ++ L + +   +  LP      +  L  + +     L S P    
Sbjct: 85  DTYAFAYAHT-----IQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIF 137

Query: 571 P--SKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKI 628
               KL  + +S+   L+ + +       +SL+ L++S    LT++    +P SL    +
Sbjct: 138 HNTPKLTTLSMSNN-NLERIEDDTFQA-TTSLQNLQLSSN-RLTHVDLSLIP-SLFHANV 193

Query: 629 CHCDNIRTLTVEEGIQCSSGRRYTSSL------LEHLEIYSCPSLTCIF-SKNEL--PAT 679
            +   + TL +   ++          L      +  +       LT +    N L   A 
Sbjct: 194 SYN-LLSTLAIPIAVE---------ELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW 243

Query: 680 LESLEVGNLPPSLKLLLVWGCSKLESI-AEMLDNNTSLEKINISGCGNLQTLPSGLHNLC 738
           L +       P L  + +   ++LE I          LE++ IS    L  L      + 
Sbjct: 244 LLNY------PGLVEVDL-SYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIP 295

Query: 739 QLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVA 798
            L+ + ++                       +N   L  + +       L+ L +    +
Sbjct: 296 TLKVLDLS-----------------------HN--HLLHVERNQPQFDRLENLYLD-HNS 329

Query: 799 LPSLEEDGLPTNLHVLLINGN 819
           + +L+       L  L ++ N
Sbjct: 330 IVTLKLSTHH-TLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 9e-05
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 88  LQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESV-SKLYNLHSLLLEDCD 146
              L +  L+   + +    + +   L  ++LS  E+  +      K+  L  L + + +
Sbjct: 225 NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-N 282

Query: 147 RLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188
           RL  L      +  L  L  S+   L  +     +   L+ L
Sbjct: 283 RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENL 323

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 35/155 (22%), Positives = 54/155 (34%), Gaps = 15/155 (9%)

Query: 38  HLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLR 97
           H+     D         L + + +         NS    L  ++L    +++ L    L 
Sbjct: 27  HIDMQTQDVYFGFEDITLNNQKIVT------FKNSTMRKLPAALLDSFRQVELLN---LN 77

Query: 98  GYRILELPDSV-GDLRYLRYLNLSGTEIRTLPESV-SKLYNLHSLLLEDCDRLEKLCADM 155
             +I E+          ++ L +    IR LP  V   +  L  L+LE    L  L   +
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGI 136

Query: 156 -GNLVKLHHLKNSNTKSLEEMPVGIGR-LTCLQTL 188
             N  KL  L  SN   LE +     +  T LQ L
Sbjct: 137 FHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNL 170

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 55/304 (18%), Positives = 117/304 (38%), Gaps = 43/304 (14%)

Query: 527 LEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIE----ISSC 582
           L  L L   + +  +     +L++L  +E+     +     ++  + L+++     ++  
Sbjct: 114 LTGLTLFNNQ-ITDIDPLK-NLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDL 170

Query: 583 DALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHC-----DNIRTL 637
             L +L          +LE L+IS    ++ I+ +    +L+ L   +        +  L
Sbjct: 171 KPLANLT---------TLERLDISSN-KVSDISVLAKLTNLESLIATNNQISDITPLGIL 220

Query: 638 TVEEGIQCSSGRRYTSSLLEHLE-IYSCPSLTCI-FSKNELPATLESLEVGNLPPSLKLL 695
           T  + +  +  +      L+ +  + S  +LT +  + N++ + L  L    L   L  L
Sbjct: 221 TNLDELSLNGNQ------LKDIGTLASLTNLTDLDLANNQI-SNLAPL--SGLT-KLTEL 270

Query: 696 LVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSP 755
            +    ++ +I   L   T+L  + ++    L+ +   + NL  L  +++        SP
Sbjct: 271 KLGAN-QISNI-SPLAGLTALTNLELNEN-QLEDIS-PISNLKNLTYLTLYFNNISDISP 326

Query: 756 EGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLL 815
              L   KL  L  YN K +  +   L NL ++  L  G    +  L      T +  L 
Sbjct: 327 VSSLT--KLQRLFFYNNK-VSDVS-SLANLTNINWLSAG-HNQISDLTPLANLTRITQLG 381

Query: 816 INGN 819
           +N  
Sbjct: 382 LNDQ 385

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 17/164 (10%)

Query: 82  LPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLL 141
                 L  +         I  +   V  L  L  +N S  ++  +   +  L  L  +L
Sbjct: 39  TVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDIL 96

Query: 142 LEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGL 201
           + +  ++  +   + NL  L  L   N + + ++   +  LT L  L    +  ++ S +
Sbjct: 97  MNNN-QIADI-TPLANLTNLTGLTLFNNQ-ITDID-PLKNLTNLNRLE---LSSNTISDI 149

Query: 202 RELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLR 245
             L  LT L+  L   N   V  +       L     L+ L + 
Sbjct: 150 SALSGLTSLQ-QLSFGN--QVTDLKP-----LANLTTLERLDIS 185

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 66/386 (17%), Positives = 126/386 (32%), Gaps = 71/386 (18%)

Query: 572 SKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHC 631
           ++  K  +   +   ++ +  +      +  L+      +  I GV+   +L ++   + 
Sbjct: 24  AEKMKTVLGKTNVTDTVSQTDL----DQVTTLQADRL-GIKSIDGVEYLNNLTQINFSNN 78

Query: 632 DNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGN---- 687
             +  +T  + +          + L  + + +   +  I     L   L  L + N    
Sbjct: 79  -QLTDITPLKNL----------TKLVDILMNNNQ-IADITPLANLT-NLTGLTLFNNQIT 125

Query: 688 -LPP-----SLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQ 741
            + P     +L  L +     +  I   L   TSL++++     N  T    L NL  L+
Sbjct: 126 DIDPLKNLTNLNRLELSSN-TISDI-SALSGLTSLQQLSFG---NQVTDLKPLANLTTLE 180

Query: 742 EISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIG--KGVAL 799
            + I+S  N VS          L  L   N + +  +   L  L +L EL +   +   +
Sbjct: 181 RLDISS--NKVSDISVLAKLTNLESLIATNNQ-ISDIT-PLGILTNLDELSLNGNQLKDI 236

Query: 800 PSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKAD 859
            +L    L TNL  L +  N       I         S L +LT +    + +S      
Sbjct: 237 GTLA--SL-TNLTDLDLANN------QIS---NLAPLSGLTKLTELKLGANQISNISPLA 284

Query: 860 DKGSGTVLPLPASLTYLRIEGFPNLERLT---------------SSIVDLQNLTGLVLGN 904
              + T L     L   ++E    +  L                S +  L  L  L   N
Sbjct: 285 GLTALTNL----ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 340

Query: 905 CPKLKYFPEKGLPSSLLQLSINRCPL 930
             K+         +++  LS     +
Sbjct: 341 N-KVSDVSSLANLTNINWLSAGHNQI 365

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 20/168 (11%)

Query: 80  SMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHS 139
           S +  L  L +L   SL G ++ ++  ++  L  L  L+L+  +I  L   +S L  L  
Sbjct: 212 SDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTE 269

Query: 140 LLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGS 199
           L L    ++  + + +  L  L +L+ +  + LE++   I  L  L  L    +  ++ S
Sbjct: 270 LKLGAN-QISNI-SPLAGLTALTNLELNENQ-LEDIS-PISNLKNLTYLT---LYFNNIS 322

Query: 200 GLRELKLLTQLRGTLCISN--LENVKHIVDAEDAQLDRKENLKELWLR 245
            +  +  LT+L+  L   N  + +V          L    N+  L   
Sbjct: 323 DISPVSSLTKLQ-RLFFYNNKVSDVSS--------LANLTNINWLSAG 361

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 15/170 (8%)

Query: 80  SMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHS 139
           S +  L  L SL+  S  G ++ +L   + +L  L  L++S  ++  +   ++KL NL S
Sbjct: 147 SDISALSGLTSLQQLSF-GNQVTDLK-PLANLTTLERLDISSNKVSDIS-VLAKLTNLES 203

Query: 140 LLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL-CSF--VVGKD 196
           L+  +  ++  +   +G L  L  L  +  + L+++   +  LT L  L  +   +    
Sbjct: 204 LIATNN-QISDITP-LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLA 259

Query: 197 SGSGLRELKLL----TQLRGTLCISNLENVKHIVDAEDAQLDRKENLKEL 242
             SGL +L  L     Q+     ++ L  + ++ +  + QL+    +  L
Sbjct: 260 PLSGLTKLTELKLGANQISNISPLAGLTALTNL-ELNENQLEDISPISNL 308

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 69  LSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSV-GDLRYLRYLNLSGTEIRTL 127
           LS +    +       L  L +L    L   R+  +P+     L  L+ L L    I ++
Sbjct: 95  LSRNHIRTIEIGAFNGLANLNTLE---LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI 151

Query: 128 PESV-SKLYNLHSLLLEDCDRLEKLCADM-GNLVKLHHLKNSNTKSLEEMPVGIGRLTCL 185
           P    +++ +L  L L +  RL  +       L  L +L  +    L E+P  +  L  L
Sbjct: 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NLTPLIKL 209

Query: 186 QTL 188
             L
Sbjct: 210 DEL 212

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 6e-05
 Identities = 60/347 (17%), Positives = 122/347 (35%), Gaps = 31/347 (8%)

Query: 467 LPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYEL 526
           L KL  L LS  +   +       L   C L  L        ++   +        L   
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204

Query: 527 LEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDAL- 585
              L  S    +       L LS+++  +    R +    E+     L  + +   +   
Sbjct: 205 PNSL-FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 586 KSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQC 645
           K   + +       +E L I        I   +   S   LK    ++++        + 
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF-SKE 322

Query: 646 SSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGN-----LPP-------SLK 693
           +    +    ++ L I   P +  +   +  P++   L                    L+
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVCPPS--PSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380

Query: 694 LLLVWG--CSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHN-LCQ----LQEISIA 746
            L++          +A M  N +SLE +++S    L +L S  ++  C     +  ++++
Sbjct: 381 TLILQRNGLKNFFKVALMTKNMSSLETLDVS----LNSLNSHAYDRTCAWAESILVLNLS 436

Query: 747 SCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRI 793
           S   L  S    LP  K+ +L ++N + + ++PK + +L++LQEL +
Sbjct: 437 SN-MLTGSVFRCLP-PKVKVLDLHNNR-IMSIPKDVTHLQALQELNV 480

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 7e-05
 Identities = 89/539 (16%), Positives = 168/539 (31%), Gaps = 122/539 (22%)

Query: 85  LLKLQSLRVFSLRGYRI--LELPDSVGDLRYLRYLNLSGTEIRTL-PESVSKLYNLHSLL 141
           +  L++L+  ++    I   +LP+   +L  L +L+LS  +I+++    +  L+ +  L 
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 142 LEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL------CSFVVGK 195
           L                  L    N     +  +  G  +   L  L       S  V K
Sbjct: 180 LS-----------------LDLSLN----PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

Query: 196 DSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSRE 255
               GL  L++       L +    N  ++   + + L+   NL     R      Y  +
Sbjct: 219 TCIQGLAGLEVH-----RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273

Query: 256 AETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVG 315
                 ++D+    TN+  F +     +        S       L+  NC      P+  
Sbjct: 274 ------IIDLFNCLTNVSSFSL---VSVTIERVKDFSYNFGWQHLELVNCKF-GQFPT-L 322

Query: 316 QLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVER 375
           +L SLK LT           ++     S +  P LE L               S      
Sbjct: 323 KLKSLKRLTF--------TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS------ 368

Query: 376 FPKLRELRILRCS--KLKGTFPE--HLPALEMLVIEGCEELLVSVSSLPALCKFIISGCK 431
                 L+ L  S   +         L  LE L  +     L  +S              
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN--LKQMSEFSVFL-------- 418

Query: 432 KVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLL 491
                                              L  L  L +S    T+   + +G+ 
Sbjct: 419 ----------------------------------SLRNLIYLDIS---HTHTRVAFNGIF 441

Query: 492 QDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLS-LSS 550
             + SL+ L++      ++ + +   + +      L +L LS C  L +L  ++ + LSS
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRN-----LTFLDLSQC-QLEQLSPTAFNSLSS 495

Query: 551 LREIEIYGCRSLVSFPEVALP--SKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISG 607
           L+ + +       S         + L+ ++ S    + +  +  +    SSL  L ++ 
Sbjct: 496 LQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQ 552

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 83  PKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLL 142
            +       R   LRGY+I  + +    L     ++ S  EIR L +    L  L +LL+
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLV 71

Query: 143 EDCDRLEKLCADMG-NLVKLHHLKNSNTK--SLEEMPVGIGRLTCLQTLC 189
            + +R+ ++   +   L  L  L  +N     L ++   +  L  L  LC
Sbjct: 72  NN-NRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLC 119

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 9e-05
 Identities = 71/507 (14%), Positives = 157/507 (30%), Gaps = 96/507 (18%)

Query: 466 QLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYE 525
               L++L LS      I +   G    +  L  L + +  +L   + E+   +      
Sbjct: 169 ANSSLKKLELS---SNQIKEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTS- 223

Query: 526 LLEYLRLSYCEGLVKLPQSS---LSLSSLREIEIYGCRSLVSFPEVALP--SKLKKIEIS 580
            +  L LS  + L     ++   L  ++L  +++     L      +     +L+   + 
Sbjct: 224 -IRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLE 280

Query: 581 SCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVE 640
             + ++ L    +     ++  L +    +   I+   LP  +          +  L +E
Sbjct: 281 YNN-IQHLFSHSLHGL-FNVRYLNLKRSFTKQSISLASLP-KIDDFSFQWLKCLEHLNME 337

Query: 641 ----EGIQCSSGRRYTSSLLEHL-------EIYSCPSLTCI-----------FSKNELPA 678
                GI+ +      +  L++L        + +  + T +            +KN++ +
Sbjct: 338 DNDIPGIKSNMFTGLIN--LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI-S 394

Query: 679 TLESLEVGNLPPSLKLLLVWGCSKLESI-AEMLDNNTSLEKINISGCGNLQTLPSG-LHN 736
            +ES     L   L++L +      + +  +      ++ +I +S       L       
Sbjct: 395 KIESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFAL 452

Query: 737 LCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIG-- 794
           +  LQ + +                           K +++ P     L++L  L +   
Sbjct: 453 VPSLQRLMLRRV----------------------ALKNVDSSPSPFQPLRNLTILDLSNN 490

Query: 795 KGVALPSLEEDGLPTNLHVLLINGNM--EIWKSMIERGRGFHRFSSLRQLTIMNCDDDMV 852
               +     +GL   L +L +  N    +WK     G   +    L  L I+N + +  
Sbjct: 491 NIANINDDMLEGLE-KLEILDLQHNNLARLWKHANP-GGPIYFLKGLSHLHILNLESNGF 548

Query: 853 SFPPKADDKGSGTVLPLPASLTYL-----RIEGFPNLERLTSSIVDLQNLTGLVL-GNCP 906
              P            L   L  +      +   P      S   +  +L  L L  N  
Sbjct: 549 DEIP------VEVFKDLF-ELKIIDLGLNNLNTLPA-----SVFNNQVSLKSLNLQKN-- 594

Query: 907 KLKYFPE---KGLPSSLLQLSINRCPL 930
            +    +        +L +L +   P 
Sbjct: 595 LITSVEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 28/151 (18%), Positives = 54/151 (35%), Gaps = 21/151 (13%)

Query: 52  FGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSV-GD 110
           F  +  +  L       L+N + G      L   L   S+R  SL   ++    ++    
Sbjct: 191 FHAIGRLFGLF------LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244

Query: 111 LRY--LRYLNLSGTEIRTLPESV-SKLYNLHSLLLEDCDRLEKLCAD----MGNLVKLHH 163
           L++  L  L+LS   +  +     + L  L    LE    ++ L +     + N+  L+ 
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNL 303

Query: 164 LKNSNTKSLEE------MPVGIGRLTCLQTL 188
            ++   +S+               L CL+ L
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 45/306 (14%)

Query: 527 LEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALK 586
           L    L+       +  S LSL+ L  + +       S       + L  +++S      
Sbjct: 57  LSSKPLNVGFS--AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG 114

Query: 587 SLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCS 646
            +       + S L+ L +S       +          +L      ++  L +       
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSN----TLDFPGKVSGGLKLN-----SLEVLDL------- 158

Query: 647 SGRRYTSSLLEHLEIY-SCPSLTCI-FSKNELPATLESLEVGNLPPSLKLLLVWGCSKLE 704
           S    + + +    +   C  L  +  S N++      ++V     +L+ L V   +   
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISG---DVDVSRC-VNLEFLDVSSNNFST 214

Query: 705 SIAEMLDNNTSLEKINISGCGNLQ-TLPSGLHNLCQLQEISIASCGNLVSSPEGGLP--- 760
            I   L + ++L+ ++ISG   L       +    +L+ ++I+S         G +P   
Sbjct: 215 GIPF-LGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSN-QF----VGPIPPLP 267

Query: 761 CAKLAMLAIYNCKRLE-ALPKGL-HNLKSLQELRIGK----GVALPSLEEDGLPTNLHVL 814
              L  L++   K     +P  L     +L  L +      G   P     G  + L  L
Sbjct: 268 LKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF---GSCSLLESL 323

Query: 815 LINGNM 820
            ++ N 
Sbjct: 324 ALSSNN 329

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 3e-04
 Identities = 57/311 (18%), Positives = 110/311 (35%), Gaps = 80/311 (25%)

Query: 527 LEYLRLSYC--EGLVKLPQSSLSLSSLREIEIYGCRSLV-SFPEVALPSKLKKIEISSCD 583
           L++L +S     G     ++  + + L+ + I      V   P + L S L+ + ++   
Sbjct: 225 LQHLDISGNKLSG--DFSRAISTCTELKLLNISSN-QFVGPIPPLPLKS-LQYLSLAENK 280

Query: 584 ALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLK---------------- 627
               +P+ ++     +L  L++SG     +  G  +PP                      
Sbjct: 281 FTGEIPD-FLSGACDTLTGLDLSGN----HFYG-AVPPFFGSCSLLESLALSSNNFSGEL 334

Query: 628 ----ICHCDNIRTLTVEE-----GIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPA 678
               +     ++ L +        +  S      S+ L  L++ S  + +     N    
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLT--NLSASLLTLDLSSN-NFSGPILPNLCQN 391

Query: 679 TLESLEV---------GNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQT 729
              +L+          G +PP+L       CS+L S+   L  N       +SG     T
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTL-----SNCSELVSL--HLSFN------YLSG-----T 433

Query: 730 LPSGLHNLCQLQEISIASCGNLVSSPEGGLP-----CAKLAMLAIYNCKRLE-ALPKGLH 783
           +PS L +L +L+++ +     L    EG +P        L  L +     L   +P GL 
Sbjct: 434 IPSSLGSLSKLRDLKLWLN-ML----EGEIPQELMYVKTLETLILDFND-LTGEIPSGLS 487

Query: 784 NLKSLQELRIG 794
           N  +L  + + 
Sbjct: 488 NCTNLNWISLS 498

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 90  SLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESV-SKLYNLHSLLLEDCDRL 148
           S RVF  +  ++ E+P  +   R    L    T++R + +   S   +L  + +   D L
Sbjct: 10  SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 149 EKLCADM-GNLVKLHHLKNSNTKSLEEMPVGI-GRLTCLQTL 188
           E + AD+  NL KLH ++     +L  +       L  LQ L
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 69  LSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSV--GDLRYLRYLNLSGTEIRT 126
           +SN+   +L        L+   L +       I  +  +   G       L L+   I+ 
Sbjct: 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNI--NIHTIERNSFVGLSFESVILWLNKNGIQE 168

Query: 127 LPESVSKLYNLHSLLLEDCDRLEKLCADM-GNLVKLHHLKNSNTKSLEEMPVGI-GRLTC 184
           +  S      L  L L D + LE+L  D+         L  S T+ +  +P      L  
Sbjct: 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKK 227

Query: 185 LQTL 188
           L+  
Sbjct: 228 LRAR 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 25/124 (20%), Positives = 40/124 (32%), Gaps = 8/124 (6%)

Query: 69  LSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSV-GDLRYLRYLNLSGTEIRTL 127
           L  +    +       L  L+ L+   L    I ++       L  L  L L    +  +
Sbjct: 82  LMENNIQMIQADTFRHLHHLEVLQ---LGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI 138

Query: 128 PESV-SKLYNLHSLLLEDCDRLEKLCADM-GNLVKLHHLKNSNTKSLEEMPVGI-GRLTC 184
           P      L  L  L L +   +E + +     +  L  L     K LE +  G    L  
Sbjct: 139 PSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197

Query: 185 LQTL 188
           L+ L
Sbjct: 198 LKYL 201

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 11/117 (9%)

Query: 76  YLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESV-SKL 134
           Y++      L  L+ L   +L    I ++P+ +  L  L  L +SG     +       L
Sbjct: 186 YISEGAFEGLFNLKYL---NLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGL 241

Query: 135 YNLHSLLLEDCDRLEKLCADM-GNLVKLHHLK-NSNTKSLEEMPVGI-GRLTCLQTL 188
            +L  L + +  ++  +  +    L  L  L    N  +L  +P  +   L  L  L
Sbjct: 242 SSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN--NLSSLPHDLFTPLRYLVEL 295

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 49/331 (14%), Positives = 107/331 (32%), Gaps = 75/331 (22%)

Query: 527 LEYLRLSYCEGLVKLPQSSLS-LSSLREIEIYGCRSLVSFPEVALP--SKLKKIEISSCD 583
              L L   + + ++       L +L  + +   + +      A     KL+++ +S  +
Sbjct: 54  TALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSK-N 110

Query: 584 ALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLP--PSLKRLKICHCDNIRTLTVEE 641
            LK LPE        +L+ L +     +T +          +  +++     +++  +E 
Sbjct: 111 QLKELPE----KMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTN-PLKSSGIEN 164

Query: 642 GIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCS 701
           G      +      L ++ I    ++T I     LP +L  L +                
Sbjct: 165 GAFQGMKK------LSYIRIADT-NITTI--PQGLPPSLTELHLDGN------------- 202

Query: 702 KLESI-AEMLDNNTSLEKINISGCGNLQTLPSG-LHNLCQLQEISIASCGNLVSSPEGGL 759
           K+  + A  L    +L K+ +S   ++  + +G L N   L+E+ + +            
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN----------- 250

Query: 760 PCAKLAMLAIYNCKRLEALPKGLHNLKSLQELR--------IGKGVALPSLEEDGLPTNL 811
                         +L  +P GL + K +Q +         IG     P         + 
Sbjct: 251 --------------KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA-SY 295

Query: 812 HVLLINGNMEIWKSMIERGRGFHRFSSLRQL 842
             + +  N  +    I+    F        +
Sbjct: 296 SGVSLFSN-PVQYWEIQPS-TFRCVYVRAAV 324

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 16/165 (9%)

Query: 80  SMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHS 139
           + +  +  L +L    L+  +I +L   + +L  +  L LSG  ++ +  +++ L ++ +
Sbjct: 54  TTIEGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKT 111

Query: 140 LLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGS 199
           L L    ++  +   +  L  L  L     + +  +   +  LT LQ L    +G    S
Sbjct: 112 LDLTST-QITDVTP-LAGLSNLQVLYLDLNQ-ITNIS-PLAGLTNLQYLS---IGNAQVS 164

Query: 200 GLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWL 244
            L  L  L++L  TL   +  N   I D     L    NL E+ L
Sbjct: 165 DLTPLANLSKLT-TLKADD--N--KISDISP--LASLPNLIEVHL 202

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 2/94 (2%)

Query: 80  SMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHS 139
           + +  L +L  L   SL   +I ++   +  L  L+ L LS   I  L  +++ L NL  
Sbjct: 147 TDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDV 204

Query: 140 LLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLE 173
           L L   + L K      NLV  + +KN++   + 
Sbjct: 205 LELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.1 bits (100), Expect = 5e-04
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 14/118 (11%)

Query: 79  PSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGT-----EIRTLPESVSK 133
                +  ++ +L +  L   +   +P S+ +L YL +L + G       I   P +++K
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI---PPAIAK 99

Query: 134 LYNLHSLLLEDCDRLE-KLCADMGNLVKLHHLK-NSNTKSLE-EMPVGIGRLTCLQTL 188
           L  LH L +     +   +   +  +  L  L  + N  +L   +P  I  L  L  +
Sbjct: 100 LTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYN--ALSGTLPPSISSLPNLVGI 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	962
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.85
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.84
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.83
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.8
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.79
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.79
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.78
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.78
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.77
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.77
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.77
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.77
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.76
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.75
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.74
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.73
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.72
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.72
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.72
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.69
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.69
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.68
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.68
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.67
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.66
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.66
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.64
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.64
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.63
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.63
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.62
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.61
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.6
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.59
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.58
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.57
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.56
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.52
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.51
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.49
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.48
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.46
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.45
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.45
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.44
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.44
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.43
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.43
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.42
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.42
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.42
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.41
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.41
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.41
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.41
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.4
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.38
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.37
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.37
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.37
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.36
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.35
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.35
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.33
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.32
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.32
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.31
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.31
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.29
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.27
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.27
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.22
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.22
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.21
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.18
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.15
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.13
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.12
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.03
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.01
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.79
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.77
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.62
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.61
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.58
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.35
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.24
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.21
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.04
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.0
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.95
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.92
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.85
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.84
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.75
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.7
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.36
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.48
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.53
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.11
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.05

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.5e-52  Score=504.41  Aligned_cols=679  Identities=17%  Similarity=0.078  Sum_probs=378.2

Q ss_pred             CcccEEEecCCCCc-c---cCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccch--hhhccCCCc
Q 002129           89 QSLRVFSLRGYRIL-E---LPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCA--DMGNLVKLH  162 (962)
Q Consensus        89 ~~L~~L~L~~~~i~-~---lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~  162 (962)
                      .+++.|+|+++.+. .   +|+++.++++|++++++.+.+..+|+.|+++++|++|+|++|...+.+|.  .++++++|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~  129 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK  129 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCC
T ss_pred             CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCC
Confidence            45666666666655 2   56666666666666666666666666666666666666666555555665  666666666


Q ss_pred             EEeccCCcccccccccc-cccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCc
Q 002129          163 HLKNSNTKSLEEMPVGI-GRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKE  241 (962)
Q Consensus       163 ~L~l~~n~~~~~lp~~~-~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~  241 (962)
                      +|++++|.+.+.+|..+ +++++|++|++..+...                           .........+.++++|++
T Consensus       130 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~---------------------------~~~~~~~~~~~~l~~L~~  182 (768)
T 3rgz_A          130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS---------------------------GANVVGWVLSDGCGELKH  182 (768)
T ss_dssp             EEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE---------------------------EETHHHHHHTTCCTTCCE
T ss_pred             EEECcCCccCCcCCHHHhccCCCCCEEECCCCccC---------------------------CcCChhhhhhccCCCCCE
Confidence            66666666444444443 55566665543221100                           000000011344455555


Q ss_pred             EEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCCCCCCCCCCC
Q 002129          242 LWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLK  321 (962)
Q Consensus       242 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~  321 (962)
                      |++++|.                                 .......   ..+++|++|++++|.+.+.+|.++.+++|+
T Consensus       183 L~Ls~n~---------------------------------l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~  226 (768)
T 3rgz_A          183 LAISGNK---------------------------------ISGDVDV---SRCVNLEFLDVSSNNFSTGIPFLGDCSALQ  226 (768)
T ss_dssp             EECCSSE---------------------------------EESCCBC---TTCTTCCEEECCSSCCCSCCCBCTTCCSCC
T ss_pred             EECCCCc---------------------------------ccccCCc---ccCCcCCEEECcCCcCCCCCcccccCCCCC
Confidence            5554443                                 1111111   135555666666655555555555566666


Q ss_pred             eEEEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCCcccccCCCccEEEeccCCcccccCCCCCCCc
Q 002129          322 HLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPAL  401 (962)
Q Consensus       322 ~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L  401 (962)
                      +|++++|.....+...+      ..+++|+.|++.++. +.+..+      ...+++|++|++++| .+++.+|..+   
T Consensus       227 ~L~Ls~n~l~~~~~~~l------~~l~~L~~L~Ls~n~-l~~~~~------~~~l~~L~~L~L~~n-~l~~~ip~~~---  289 (768)
T 3rgz_A          227 HLDISGNKLSGDFSRAI------STCTELKLLNISSNQ-FVGPIP------PLPLKSLQYLSLAEN-KFTGEIPDFL---  289 (768)
T ss_dssp             EEECCSSCCCSCHHHHT------TTCSSCCEEECCSSC-CEESCC------CCCCTTCCEEECCSS-EEEESCCCCS---
T ss_pred             EEECcCCcCCCcccHHH------hcCCCCCEEECCCCc-ccCccC------ccccCCCCEEECcCC-ccCCccCHHH---
Confidence            66665554322222111      114445555554432 222111      124566666666666 4544555321   


Q ss_pred             cEEEEcCcccccccCCCCCcceEEEEccCCCceeeccccCCCCCCcceeccCCccccccCCCCCCCCCcceEEecccccc
Q 002129          402 EMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQT  481 (962)
Q Consensus       402 ~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  481 (962)
                                    ...+++|++|++++|.....                        ....+..+++|++|++++|.+.
T Consensus       290 --------------~~~~~~L~~L~Ls~n~l~~~------------------------~p~~~~~l~~L~~L~L~~n~l~  331 (768)
T 3rgz_A          290 --------------SGACDTLTGLDLSGNHFYGA------------------------VPPFFGSCSLLESLALSSNNFS  331 (768)
T ss_dssp             --------------CTTCTTCSEEECCSSEEEEC------------------------CCGGGGGCTTCCEEECCSSEEE
T ss_pred             --------------HhhcCcCCEEECcCCcCCCc------------------------cchHHhcCCCccEEECCCCccc
Confidence                          01123333333333331110                        0001123455666666665554


Q ss_pred             eeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccCCC--CCCccEEEecCC
Q 002129          482 YIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLS--LSSLREIEIYGC  559 (962)
Q Consensus       482 ~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~--l~~L~~L~l~~~  559 (962)
                      +.  .+...+..+++|++|++++|.-...++..     +..+.++|+.|++++|...+.+|..+..  +++|++|++++|
T Consensus       332 ~~--ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-----l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n  404 (768)
T 3rgz_A          332 GE--LPMDTLLKMRGLKVLDLSFNEFSGELPES-----LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN  404 (768)
T ss_dssp             EE--CCHHHHTTCTTCCEEECCSSEEEECCCTT-----HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS
T ss_pred             Cc--CCHHHHhcCCCCCEEeCcCCccCccccHH-----HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC
Confidence            21  12223455666666666664322233332     3334237777777777766666665555  667777777776


Q ss_pred             CCccccC-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCC-CCCCCCceEEecccCCCccc
Q 002129          560 RSLVSFP-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGV-QLPPSLKRLKICHCDNIRTL  637 (962)
Q Consensus       560 ~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l  637 (962)
                      .....+| .+..+++|++|++++|...+.+|..+  ..+++|++|++++|.....+|.. ..+++|+.|++++|.-...+
T Consensus       405 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  482 (768)
T 3rgz_A          405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI  482 (768)
T ss_dssp             EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             ccccccCHHHhcCCCCCEEECcCCcccCcccHHH--hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC
Confidence            6555555 35556777777777776555555554  56677777777776544444432 33455666666555322222


Q ss_pred             cccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCchhhhhhccCCCCcc
Q 002129          638 TVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLE  717 (962)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~  717 (962)
                      +                                       ..+..+      ++|++|++++|.+.+.+|..++.+++|+
T Consensus       483 p---------------------------------------~~l~~l------~~L~~L~L~~N~l~~~~p~~~~~l~~L~  517 (768)
T 3rgz_A          483 P---------------------------------------SGLSNC------TNLNWISLSNNRLTGEIPKWIGRLENLA  517 (768)
T ss_dssp             C---------------------------------------GGGGGC------TTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             C---------------------------------------HHHhcC------CCCCEEEccCCccCCcCChHHhcCCCCC
Confidence            2                                       111111      5677777777777777777777777777


Q ss_pred             eEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccc----------------------c
Q 002129          718 KINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKR----------------------L  775 (962)
Q Consensus       718 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~----------------------l  775 (962)
                      +|++++|.+.+.+|..+.++++|+.|++++|+..+.+|...+....+..+.+..+..                      .
T Consensus       518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  597 (768)
T 3rgz_A          518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ  597 (768)
T ss_dssp             EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred             EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence            777777777777777777777777777777766666666555544444443332110                      1


Q ss_pred             ccCccccCCCcccceeecCCCCCCCCCCC-CCCCCccceEeecCchhhhHHHHhccccccccCccceeecccCCCCCccC
Q 002129          776 EALPKGLHNLKSLQELRIGKGVALPSLEE-DGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSF  854 (962)
Q Consensus       776 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  854 (962)
                      +..+..+..++.++.+++..+..-..+|. .+.+++|++|++++|.+....+    ..++.+++|+.|++++|. ....+
T Consensus       598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip----~~l~~l~~L~~L~Ls~N~-l~g~i  672 (768)
T 3rgz_A          598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP----KEIGSMPYLFILNLGHND-ISGSI  672 (768)
T ss_dssp             TCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC----GGGGGCTTCCEEECCSSC-CCSCC
T ss_pred             cccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC----HHHhccccCCEEeCcCCc-cCCCC
Confidence            12222334444555555554432222332 2456778888888888776555    468889999999999963 44466


Q ss_pred             CCCCCCCCCCccccCCCccceEeeccCCCCcccccccccCCCcCeEeccCCCCCccCCCCCCccccceeeccCChhhH--
Q 002129          855 PPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIE--  932 (962)
Q Consensus       855 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~l~--  932 (962)
                      |...         ..+++|++|+|+++.--..+|..+.++++|++|++++|+--..+|..+...++....+.+||.+.  
T Consensus       673 p~~l---------~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          673 PDEV---------GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             CGGG---------GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred             ChHH---------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence            6544         57899999999996555589999999999999999998766788887777788888888887543  


Q ss_pred             --HhhccccCCcccccCcccEEE
Q 002129          933 --EKCRKDGGQYWDLLTHIPRVE  953 (962)
Q Consensus       933 --~~~~~~~~~~~~~i~~~~~~~  953 (962)
                        ..|....+++|++|+|+|.++
T Consensus       744 ~l~~C~~~~~~~~~~~~~~~~~~  766 (768)
T 3rgz_A          744 PLPRCDPSNADGYAHHQRSHHHH  766 (768)
T ss_dssp             TSCCCCSCC--------------
T ss_pred             CCcCCCCCccCCCCCCCCccccC
Confidence              268888899999999999864

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.1e-48  Score=470.13  Aligned_cols=660  Identities=16%  Similarity=0.071  Sum_probs=413.7

Q ss_pred             CceeEEeeccccCCCCCCCCcc---cccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCccc-ccCh--hhh
Q 002129           59 QHLRTFLPVILSNSKPGYLAPS---MLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIR-TLPE--SVS  132 (962)
Q Consensus        59 ~~Lr~L~l~~~~~~~~~~~~~~---~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~-~lp~--~i~  132 (962)
                      .+++.|.+.+..      +...   +++.+.++++|++++++.+.+..+|+.|+.+++|++|+|++|.++ .+|.  .++
T Consensus        50 ~~v~~L~L~~~~------l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~  123 (768)
T 3rgz_A           50 DKVTSIDLSSKP------LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG  123 (768)
T ss_dssp             TEEEEEECTTSC------CCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGG
T ss_pred             CcEEEEECCCCC------cCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHh
Confidence            456666654432      2233   566666888888888888887777788888888888888888876 5666  788


Q ss_pred             ccCCccEEecCCCcchhccchhh-hccCCCcEEeccCCccccccccc---ccccccccccceeeecCCCCCCcccccccc
Q 002129          133 KLYNLHSLLLEDCDRLEKLCADM-GNLVKLHHLKNSNTKSLEEMPVG---IGRLTCLQTLCSFVVGKDSGSGLRELKLLT  208 (962)
Q Consensus       133 ~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~L~l~~n~~~~~lp~~---~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~  208 (962)
                      ++++|++|++++|...+..|..+ +++++|++|++++|.+.+..|..   ++++++|++|++..+.....          
T Consensus       124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------  193 (768)
T 3rgz_A          124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD----------  193 (768)
T ss_dssp             GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESC----------
T ss_pred             CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCccccc----------
Confidence            88888888888876666666655 78888888888888844445544   67777888776543221100          


Q ss_pred             cccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCC-CCCc
Q 002129          209 QLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGM-KFPT  287 (962)
Q Consensus       209 ~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~  287 (962)
                                            ..+..+++|++|++++|....          ....+..+++|++|+++++... .+|.
T Consensus       194 ----------------------~~~~~l~~L~~L~Ls~n~l~~----------~~~~l~~l~~L~~L~Ls~n~l~~~~~~  241 (768)
T 3rgz_A          194 ----------------------VDVSRCVNLEFLDVSSNNFST----------GIPFLGDCSALQHLDISGNKLSGDFSR  241 (768)
T ss_dssp             ----------------------CBCTTCTTCCEEECCSSCCCS----------CCCBCTTCCSCCEEECCSSCCCSCHHH
T ss_pred             ----------------------CCcccCCcCCEEECcCCcCCC----------CCcccccCCCCCEEECcCCcCCCcccH
Confidence                                  012445666666666554221          1122556667777777776654 3455


Q ss_pred             cccCCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccC
Q 002129          288 WLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPH  367 (962)
Q Consensus       288 ~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  367 (962)
                      ++.  .+++|++|++++|.+.+.+|.. .+++|++|++++|.....+...+..     .+++|+.|++.++. +.+..+.
T Consensus       242 ~l~--~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~-----~~~~L~~L~Ls~n~-l~~~~p~  312 (768)
T 3rgz_A          242 AIS--TCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSG-----ACDTLTGLDLSGNH-FYGAVPP  312 (768)
T ss_dssp             HTT--TCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCT-----TCTTCSEEECCSSE-EEECCCG
T ss_pred             HHh--cCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHh-----hcCcCCEEECcCCc-CCCccch
Confidence            554  4677777777777766555544 6777777777776543333322211     14677777777653 2222221


Q ss_pred             CCCcccccCCCccEEEeccCCcccccCC----CCCCCccEEEEcCccccc---ccCCCCC-cceEEEEccCCCceeeccc
Q 002129          368 GSSQGVERFPKLRELRILRCSKLKGTFP----EHLPALEMLVIEGCEELL---VSVSSLP-ALCKFIISGCKKVVWESAT  439 (962)
Q Consensus       368 ~~~~~~~~~~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~~~~l~---~~~~~l~-~L~~L~l~~~~~~~~~~~~  439 (962)
                          .++.+++|++|++++| .+++.+|    ..+++|++|++++|....   ..+..++ +|+.|++++|.......  
T Consensus       313 ----~~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~--  385 (768)
T 3rgz_A          313 ----FFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL--  385 (768)
T ss_dssp             ----GGGGCTTCCEEECCSS-EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC--
T ss_pred             ----HHhcCCCccEEECCCC-cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC--
Confidence                2466777777777777 5554555    346777777777775432   1233344 77777777765322110  


Q ss_pred             cCCCCCCcceeccCCccccccCCCCCCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHH
Q 002129          440 GHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQ  519 (962)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~  519 (962)
                                          .......+++|++|++++|.+++.   .+..+..+++|++|++++| .+....+..    
T Consensus       386 --------------------~~~~~~~~~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~----  437 (768)
T 3rgz_A          386 --------------------PNLCQNPKNTLQELYLQNNGFTGK---IPPTLSNCSELVSLHLSFN-YLSGTIPSS----  437 (768)
T ss_dssp             --------------------TTTTCSTTCCCCEEECCSSEEEEE---CCGGGGGCTTCCEEECCSS-EEESCCCGG----
T ss_pred             --------------------hhhhhcccCCccEEECCCCccccc---cCHHHhcCCCCCEEECcCC-cccCcccHH----
Confidence                                000111256788888888777644   2344567778888888874 444332221    


Q ss_pred             HHHHHhhcceeecccccCccccCccCCCCCCccEEEecCCCCccccC-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCC
Q 002129          520 QQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFP-EVALPSKLKKIEISSCDALKSLPEAWMCDTNS  598 (962)
Q Consensus       520 ~~~l~~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~  598 (962)
                      +..+ ++|+.|++++|...+.+|..+..+++|++|++++|.....+| .+..+++|++|++++|...+.+|..+  ..++
T Consensus       438 l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~  514 (768)
T 3rgz_A          438 LGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLE  514 (768)
T ss_dssp             GGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCT
T ss_pred             HhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCC
Confidence            2223 778888888887777777777778888888888876665555 35567788888888887655666655  5677


Q ss_pred             CccEEEecCCCCCCcccCC-CCCCCCceEEecccCCCccccccccccccCCCCccc-cccceeEeeCCCC------cccc
Q 002129          599 SLEILEISGCDSLTYIAGV-QLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTS-SLLEHLEIYSCPS------LTCI  670 (962)
Q Consensus       599 ~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~------l~~~  670 (962)
                      +|++|++++|.....+|.. ..+++|+.|++++|.-...+|...+... ....... ...+...+.+...      ....
T Consensus       515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (768)
T 3rgz_A          515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-GKIAANFIAGKRYVYIKNDGMKKECHGAGNL  593 (768)
T ss_dssp             TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT-TCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred             CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc-chhhhhccccccccccccccccccccccccc
Confidence            8888888886655455543 4457788888887754445542211000 0000000 0000111111000      0000


Q ss_pred             c-cCCCccccccccccCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCC
Q 002129          671 F-SKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCG  749 (962)
Q Consensus       671 ~-~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~  749 (962)
                      . ..+..+..+..+      +.++.+++..+...+.+|..++.+++|+.|++++|.+.+.+|..++++++|+.|+|++|.
T Consensus       594 ~~~~~~~~~~~~~l------~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~  667 (768)
T 3rgz_A          594 LEFQGIRSEQLNRL------STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND  667 (768)
T ss_dssp             EECTTCCGGGGGGG------GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccccccchhhhcc------ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCc
Confidence            0 000111111111      455566667777777788888888889999999888888888888888889999999887


Q ss_pred             CcccCCCCCCCcccccccccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCch
Q 002129          750 NLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNM  820 (962)
Q Consensus       750 ~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~  820 (962)
                      ..+.+|..+..+++|+.|++++|...+.+|..+..+++|++|++++|+....+|..+.+.++....+.+|+
T Consensus       668 l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~  738 (768)
T 3rgz_A          668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP  738 (768)
T ss_dssp             CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCT
T ss_pred             cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCc
Confidence            77788888888888889999988888888888888888999999888776777776555555555555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=9.3e-42  Score=409.32  Aligned_cols=584  Identities=17%  Similarity=0.146  Sum_probs=296.5

Q ss_pred             cEEEecCCCCcccCccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCc
Q 002129           92 RVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTK  170 (962)
Q Consensus        92 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~  170 (962)
                      +++++++++++.+|..+.  .++++|+|++|.++.+|. .|+++++|++|++++|...+..|..++++++|++|++++|.
T Consensus         7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred             CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence            568888888888887665  688888888888888765 48888888888888865555556778888888888888887


Q ss_pred             cccccccc-ccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecC
Q 002129          171 SLEEMPVG-IGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLY  249 (962)
Q Consensus       171 ~~~~lp~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  249 (962)
                       +..+|.+ |+++++|++|++.                                                          
T Consensus        85 -l~~l~~~~~~~l~~L~~L~L~----------------------------------------------------------  105 (680)
T 1ziw_A           85 -LSQLSDKTFAFCTNLTELHLM----------------------------------------------------------  105 (680)
T ss_dssp             -CCCCCTTTTTTCTTCSEEECC----------------------------------------------------------
T ss_pred             -cCccChhhhccCCCCCEEECC----------------------------------------------------------
Confidence             6666653 5555555555321                                                          


Q ss_pred             CCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCC-ccccCCCCCCceEEEEecCCCCCCCC-CCCCCCCCCeEEEcC
Q 002129          250 GSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFP-TWLGDSSFSKLVTLKFKNCDMCTALP-SVGQLPSLKHLTVRG  327 (962)
Q Consensus       250 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~  327 (962)
                                                   ++....+| ..+.  .+++|++|++++|.+.+..+ .++.+++|++|++++
T Consensus       106 -----------------------------~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  154 (680)
T 1ziw_A          106 -----------------------------SNSIQKIKNNPFV--KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN  154 (680)
T ss_dssp             -----------------------------SSCCCCCCSCTTT--TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred             -----------------------------CCccCccChhHcc--ccCCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence                                         22222222 1222  46667777777776655544 466777777777777


Q ss_pred             CCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCCcccccCCCccEEEeccCCcccccCCCCCCCccEEEEc
Q 002129          328 MSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIE  407 (962)
Q Consensus       328 ~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~  407 (962)
                      |... .+....++                                ...+++|++|++++| .+++..|.           
T Consensus       155 n~l~-~~~~~~~~--------------------------------~~~~~~L~~L~L~~n-~l~~~~~~-----------  189 (680)
T 1ziw_A          155 NKIQ-ALKSEELD--------------------------------IFANSSLKKLELSSN-QIKEFSPG-----------  189 (680)
T ss_dssp             SCCC-CBCHHHHG--------------------------------GGTTCEESEEECTTC-CCCCBCTT-----------
T ss_pred             Cccc-ccCHHHhh--------------------------------ccccccccEEECCCC-cccccChh-----------
Confidence            6421 11100000                                112345556666555 44422222           


Q ss_pred             CcccccccCCCCCcceEEEEccCCCceeeccccCCCCCCcceeccCCccccccCCCCCCCCCcceEEecccccceeeccc
Q 002129          408 GCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSH  487 (962)
Q Consensus       408 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~i~~~~  487 (962)
                             .+..+++|+.+++.++.........                   +.  .....++|++|++++|.+.++.   
T Consensus       190 -------~~~~l~~L~~L~l~~~~l~~~~~~~-------------------~~--~~l~~~~L~~L~L~~n~l~~~~---  238 (680)
T 1ziw_A          190 -------CFHAIGRLFGLFLNNVQLGPSLTEK-------------------LC--LELANTSIRNLSLSNSQLSTTS---  238 (680)
T ss_dssp             -------GGGGSSEECEEECTTCCCHHHHHHH-------------------HH--HHHTTSCCCEEECTTSCCCEEC---
T ss_pred             -------hhhhhhhhhhhhccccccChhhHHH-------------------HH--HHhhhccccEEEccCCcccccC---
Confidence                   1122223333333222211000000                   00  0001245566666665555432   


Q ss_pred             CCccccCC--CccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccCCCCCCccEEEecCCCCcc--
Q 002129          488 DGLLQDVC--SLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLV--  563 (962)
Q Consensus       488 ~~~~~~l~--~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~--  563 (962)
                      +..+..++  +|++|++++| .+..+....    +..+ ++|+.|++++|...+..|..+..+++|++|++++|....  
T Consensus       239 ~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~  312 (680)
T 1ziw_A          239 NTTFLGLKWTNLTMLDLSYN-NLNVVGNDS----FAWL-PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI  312 (680)
T ss_dssp             TTTTGGGGGSCCCEEECTTS-CCCEECTTT----TTTC-TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC--
T ss_pred             hhHhhccCcCCCCEEECCCC-CcCccCccc----ccCc-ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccc
Confidence            22233332  2555555552 333333221    1112 566666666666655566667777777777777643221  


Q ss_pred             ---ccC-----CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCC-CCcccCCCCCCCCceEEecccCCC
Q 002129          564 ---SFP-----EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDS-LTYIAGVQLPPSLKRLKICHCDNI  634 (962)
Q Consensus       564 ---~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~-l~~~~~~~~~~~L~~L~l~~~~~l  634 (962)
                         .+|     .+..+++|++|++++|. +..++...+ ..+++|++|++++|.. +..++...+.              
T Consensus       313 ~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~l~~~~f~--------------  376 (680)
T 1ziw_A          313 SLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMF-TGLINLKYLSLSNSFTSLRTLTNETFV--------------  376 (680)
T ss_dssp             ----CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTTT-TTCTTCCEEECTTCBSCCCEECTTTTG--------------
T ss_pred             ccccccccChhhcccCCCCCEEECCCCc-cCCCChhHh-ccccCCcEEECCCCchhhhhcchhhhc--------------
Confidence               122     23445666666666665 333333322 5566666666666431 1111111000              


Q ss_pred             ccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCchhhhhhccCCC
Q 002129          635 RTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNT  714 (962)
Q Consensus       635 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~  714 (962)
                                     ....                                    ++|+.|++++|.+.+..|.++..++
T Consensus       377 ---------------~~~~------------------------------------~~L~~L~L~~n~l~~~~~~~~~~l~  405 (680)
T 1ziw_A          377 ---------------SLAH------------------------------------SPLHILNLTKNKISKIESDAFSWLG  405 (680)
T ss_dssp             ---------------GGTT------------------------------------SCCCEEECTTSCCCEECTTTTTTCT
T ss_pred             ---------------cccc------------------------------------CcCceEECCCCCCCeEChhhhhCCC
Confidence                           0000                                    3455555555555554455555555


Q ss_pred             CcceEeecCCccccccC-ccccCCCCccEEEcccCCCcccCCCCCCCccccccccccccccc--ccCccccCCCccccee
Q 002129          715 SLEKINISGCGNLQTLP-SGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRL--EALPKGLHNLKSLQEL  791 (962)
Q Consensus       715 ~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l--~~~~~~~~~l~~L~~L  791 (962)
                      +|+.|++++|.+.+.+| ..+.++++|++|++++|......+..+..+++|+.|++++|...  +.+|..+.++++|++|
T Consensus       406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L  485 (680)
T 1ziw_A          406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL  485 (680)
T ss_dssp             TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred             CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence            55555555555444433 34455555555555555322222333333455555555555432  3344455555555555


Q ss_pred             ecCCCCCCCCCCCC--CCCCccceEeecCchhhhHHHHh----ccccccccCccceeecccCCCCCccCCCCCCCCCCCc
Q 002129          792 RIGKGVALPSLEED--GLPTNLHVLLINGNMEIWKSMIE----RGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGT  865 (962)
Q Consensus       792 ~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  865 (962)
                      ++++| .+..++..  ..+++|++|++++|.+.......    ....+.++++|++|++++|.  ...+|.+        
T Consensus       486 ~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~--l~~i~~~--------  554 (680)
T 1ziw_A          486 DLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG--FDEIPVE--------  554 (680)
T ss_dssp             ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC--CCCCCTT--------
T ss_pred             ECCCC-CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC--CCCCCHH--------
Confidence            55555 23333321  33455555555555543321100    00124556666666666652  2233332        


Q ss_pred             cccCCCccceEeeccCCCCcccccc-cccCCCcCeEeccCCCCCccCCCCCC---ccccceeeccCCh
Q 002129          866 VLPLPASLTYLRIEGFPNLERLTSS-IVDLQNLTGLVLGNCPKLKYFPEKGL---PSSLLQLSINRCP  929 (962)
Q Consensus       866 ~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~---~~sL~~L~i~~c~  929 (962)
                      ++..+++|++|++++ +.++.+|.. +..+++|++|++++| +++.++...+   .++|+.|++++||
T Consensus       555 ~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          555 VFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP  620 (680)
T ss_dssp             TTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred             HcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence            134556666666655 455566544 345566666666664 4555554322   2566666666555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.2e-39  Score=388.69  Aligned_cols=253  Identities=16%  Similarity=0.137  Sum_probs=147.6

Q ss_pred             cCCceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccCc-ccc
Q 002129           32 FSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPD-SVG  109 (962)
Q Consensus        32 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~-~~~  109 (962)
                      ++..+|+|++.++.+.... ...+.++++|++|.+.++.       ...+++..+ ++++|++|+|++|.++.+|. .|+
T Consensus        23 ~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~   94 (680)
T 1ziw_A           23 LPTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNT-------ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA   94 (680)
T ss_dssp             SCTTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSC-------CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCc-------cCccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence            4456777777777665432 2446677777777765543       234444444 77777777777777777765 477


Q ss_pred             CCCcCcEEEcCCCcccccC-hhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccc-ccc--ccccc
Q 002129          110 DLRYLRYLNLSGTEIRTLP-ESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPV-GIG--RLTCL  185 (962)
Q Consensus       110 ~L~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~-~~~--~L~~L  185 (962)
                      ++++|++|+|++|.++.+| ..|+++++|++|++++|...+..|..++++++|++|++++|. +..++. .++  .+++|
T Consensus        95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L  173 (680)
T 1ziw_A           95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSL  173 (680)
T ss_dssp             TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEE
T ss_pred             cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccc
Confidence            7777777777777777665 457777777777777765445555667777777777777776 444443 232  34666


Q ss_pred             cccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhccc
Q 002129          186 QTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDM  265 (962)
Q Consensus       186 ~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  265 (962)
                      ++|++..+..                              ....+..+..+.+|+.+++.++...   ..  . ...+..
T Consensus       174 ~~L~L~~n~l------------------------------~~~~~~~~~~l~~L~~L~l~~~~l~---~~--~-~~~~~~  217 (680)
T 1ziw_A          174 KKLELSSNQI------------------------------KEFSPGCFHAIGRLFGLFLNNVQLG---PS--L-TEKLCL  217 (680)
T ss_dssp             SEEECTTCCC------------------------------CCBCTTGGGGSSEECEEECTTCCCH---HH--H-HHHHHH
T ss_pred             cEEECCCCcc------------------------------cccChhhhhhhhhhhhhhccccccC---hh--h-HHHHHH
Confidence            6665432211                              1111223444555555555433211   00  0 000000


Q ss_pred             CCCCCCcceEEEeccCCCCC-CccccCCCCCCceEEEEecCCCCCCCC-CCCCCCCCCeEEEcCCC
Q 002129          266 LKPHTNLEQFCIKGYGGMKF-PTWLGDSSFSKLVTLKFKNCDMCTALP-SVGQLPSLKHLTVRGMS  329 (962)
Q Consensus       266 l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~  329 (962)
                      ....++|+.|+++++..... |.++.....++|+.|++++|.+....+ .++.+++|++|++++|.
T Consensus       218 ~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  283 (680)
T 1ziw_A          218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN  283 (680)
T ss_dssp             HHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred             HhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence            11236777777777765543 344432112348888888887665554 57777888888887775

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.4e-38  Score=376.43  Aligned_cols=295  Identities=16%  Similarity=0.145  Sum_probs=147.8

Q ss_pred             CcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccCCCC
Q 002129          469 KLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSL  548 (962)
Q Consensus       469 ~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l  548 (962)
                      +|++|++++|.++++   +...+..+++|++|++++ +.++.++..     +..+ ++|++|++++|......|..+..+
T Consensus       255 ~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~-n~l~~lp~~-----l~~l-~~L~~L~l~~n~l~~~~~~~~~~l  324 (606)
T 3t6q_A          255 SVESINLQKHYFFNI---SSNTFHCFSGLQELDLTA-THLSELPSG-----LVGL-STLKKLVLSANKFENLCQISASNF  324 (606)
T ss_dssp             EEEEEECTTCCCSSC---CTTTTTTCTTCSEEECTT-SCCSCCCSS-----CCSC-TTCCEEECTTCCCSBGGGGCGGGC
T ss_pred             ceeEEEeecCccCcc---CHHHhccccCCCEEeccC-CccCCCChh-----hccc-ccCCEEECccCCcCcCchhhhhcc
Confidence            456666666655443   223344555555555555 234443322     1111 455555555555444444455555


Q ss_pred             CCccEEEecCCCCccccCC--CCCCCCCcEEEEcCCCCCCCC--hhhhhcCCCCCccEEEecCCCCCCcccCC-CCCCCC
Q 002129          549 SSLREIEIYGCRSLVSFPE--VALPSKLKKIEISSCDALKSL--PEAWMCDTNSSLEILEISGCDSLTYIAGV-QLPPSL  623 (962)
Q Consensus       549 ~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L  623 (962)
                      ++|++|++++|.....++.  +..+++|++|++++|......  +..+  ..+++|++|++++|......+.. ..+++|
T Consensus       325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  402 (606)
T 3t6q_A          325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL--RNLSHLQSLNLSYNEPLSLKTEAFKECPQL  402 (606)
T ss_dssp             TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT--TTCTTCCEEECCSCSCEEECTTTTTTCTTC
T ss_pred             CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc--ccCCCCCEEECCCCcCCcCCHHHhcCCccC
Confidence            5555555555544433332  334555555555555422211  1112  44555555555554321111111 223344


Q ss_pred             ceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCc
Q 002129          624 KRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKL  703 (962)
Q Consensus       624 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~  703 (962)
                      +.|++++|.-....+                                      +..+.     .+ ++|++|++++|...
T Consensus       403 ~~L~l~~n~l~~~~~--------------------------------------~~~~~-----~l-~~L~~L~l~~n~l~  438 (606)
T 3t6q_A          403 ELLDLAFTRLKVKDA--------------------------------------QSPFQ-----NL-HLLKVLNLSHSLLD  438 (606)
T ss_dssp             SEEECTTCCEECCTT--------------------------------------CCTTT-----TC-TTCCEEECTTCCCB
T ss_pred             CeEECCCCcCCCccc--------------------------------------chhhh-----Cc-ccCCEEECCCCccC
Confidence            444444432100000                                      00011     11 56777777777666


Q ss_pred             hhhhhhccCCCCcceEeecCCccccc---cCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCcc
Q 002129          704 ESIAEMLDNNTSLEKINISGCGNLQT---LPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPK  780 (962)
Q Consensus       704 ~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  780 (962)
                      +..+..+..+++|++|++++|.+.+.   .+..+..+++|++|++++|...+..|..+..+++|+.|++++|...+..|.
T Consensus       439 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  518 (606)
T 3t6q_A          439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE  518 (606)
T ss_dssp             TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred             CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence            66666666777777777777665542   124466667777777777644444455555566777777777766666666


Q ss_pred             ccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchh
Q 002129          781 GLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNME  821 (962)
Q Consensus       781 ~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~  821 (962)
                      .+.++++| +|++++|. +..++..  ..+++|+.+++++|+.
T Consensus       519 ~l~~l~~L-~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          519 ALSHLKGI-YLNLASNH-ISIILPSLLPILSQQRTINLRQNPL  559 (606)
T ss_dssp             GGTTCCSC-EEECCSSC-CCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred             HhCccccc-EEECcCCc-ccccCHhhcccCCCCCEEeCCCCCc
Confidence            66667777 77777663 3333221  2234455555555443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.5e-38  Score=376.17  Aligned_cols=126  Identities=20%  Similarity=0.225  Sum_probs=89.4

Q ss_pred             CceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCccc-CccccCCCcCcEEEcCCCccccc-ChhhhccC
Q 002129           59 QHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTL-PESVSKLY  135 (962)
Q Consensus        59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n~i~~l-p~~i~~L~  135 (962)
                      +++++|.+.++.       ...+++..+ ++++|++|++++|.++.+ |..|+++++|++|+|++|.++.+ |..|++++
T Consensus        32 ~~l~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  104 (606)
T 3vq2_A           32 SSTKNIDLSFNP-------LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT  104 (606)
T ss_dssp             TTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred             CCcCEEECCCCC-------cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence            577777776653       344555444 788888888888887766 55678888888888888888766 56688888


Q ss_pred             CccEEecCCCcchhccc-hhhhccCCCcEEeccCCcccc-cccccccccccccccceee
Q 002129          136 NLHSLLLEDCDRLEKLC-ADMGNLVKLHHLKNSNTKSLE-EMPVGIGRLTCLQTLCSFV  192 (962)
Q Consensus       136 ~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~n~~~~-~lp~~~~~L~~L~~L~~~~  192 (962)
                      +|++|++++|. +..+| ..++++++|++|++++|.+.. .+|..++++++|++|++..
T Consensus       105 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~  162 (606)
T 3vq2_A          105 SLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY  162 (606)
T ss_dssp             TCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred             cCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence            88888888754 44443 567888888888888887332 4677777777777775543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.3e-38  Score=372.31  Aligned_cols=509  Identities=15%  Similarity=0.119  Sum_probs=271.4

Q ss_pred             cccEEEecCCCCccc-CccccCCCcCcEEEcCCCccccc-ChhhhccCCccEEecCCCcchhccchhhhccCCCcEEecc
Q 002129           90 SLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTL-PESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNS  167 (962)
Q Consensus        90 ~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~  167 (962)
                      .+++|+|++|.++.+ |..|+++++|++|+|++|.++.+ |..|+++++|++|++++|...+..|..|+++++|++|+++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            578888888888866 56788888888888888888766 5668888888888888865555556778888888888888


Q ss_pred             CCcccccc-cccccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEe
Q 002129          168 NTKSLEEM-PVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRW  246 (962)
Q Consensus       168 ~n~~~~~l-p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  246 (962)
                      +|. +..+ |..++++++|++|++..+..                                                   
T Consensus       114 ~n~-i~~l~~~~~~~l~~L~~L~L~~n~l---------------------------------------------------  141 (606)
T 3t6q_A          114 QTG-ISSIDFIPLHNQKTLESLYLGSNHI---------------------------------------------------  141 (606)
T ss_dssp             TSC-CSCGGGSCCTTCTTCCEEECCSSCC---------------------------------------------------
T ss_pred             ccC-cccCCcchhccCCcccEEECCCCcc---------------------------------------------------
Confidence            887 5554 44466666666664432110                                                   


Q ss_pred             ecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCC-ccccCCCCCCce--EEEEecCCCCCCCCCCCCCCCCCeE
Q 002129          247 TLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFP-TWLGDSSFSKLV--TLKFKNCDMCTALPSVGQLPSLKHL  323 (962)
Q Consensus       247 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~--~L~L~~~~~~~~l~~l~~l~~L~~L  323 (962)
                         ...         ....+..+++|+.|++++|....++ .++.  .+++|+  .|++++|.+.+..+.......|++|
T Consensus       142 ---~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L  207 (606)
T 3t6q_A          142 ---SSI---------KLPKGFPTEKLKVLDFQNNAIHYLSKEDMS--SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL  207 (606)
T ss_dssp             ---CCC---------CCCTTCCCTTCCEEECCSSCCCEECHHHHH--TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred             ---ccc---------CcccccCCcccCEEEcccCcccccChhhhh--hhcccceeEEecCCCccCccChhHhhhcccccc
Confidence               000         0011111334444444444444332 2222  355555  5666666655555544444566666


Q ss_pred             EEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCCcccccC--CCccEEEeccCCcccccCCCCCCCc
Q 002129          324 TVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERF--PKLRELRILRCSKLKGTFPEHLPAL  401 (962)
Q Consensus       324 ~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~--~~L~~L~l~~c~~l~~~~p~~l~~L  401 (962)
                      ++++|..+.......       .-..++.+.+..+............  ...+  .+|+.|++++| .++ .++..    
T Consensus       208 ~l~~~~~~~~~~~~l-------~~~~l~~l~~~~~~~~~~~~i~~~~--~~~l~~~~L~~L~l~~n-~l~-~~~~~----  272 (606)
T 3t6q_A          208 NFGGTQNLLVIFKGL-------KNSTIQSLWLGTFEDMDDEDISPAV--FEGLCEMSVESINLQKH-YFF-NISSN----  272 (606)
T ss_dssp             ECTTCSCHHHHHHHT-------TTCEEEEEECCCCTTSCCCCCCGGG--GGGGGGSEEEEEECTTC-CCS-SCCTT----
T ss_pred             ccCCchhHHHHhhhc-------cccchhheechhhccccccccChhH--hchhhcCceeEEEeecC-ccC-ccCHH----
Confidence            666664322111000       0011222222222111110000000  0111  14555555555 333 22210    


Q ss_pred             cEEEEcCcccccccCCCCCcceEEEEccCCCceeeccccCCCCCCcceeccCCccccccCCCCCCCCCcceEEecccccc
Q 002129          402 EMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQT  481 (962)
Q Consensus       402 ~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  481 (962)
                                   .+..+++|++|++++|.....                        . .....+++|++|++++|.+.
T Consensus       273 -------------~~~~l~~L~~L~l~~n~l~~l------------------------p-~~l~~l~~L~~L~l~~n~l~  314 (606)
T 3t6q_A          273 -------------TFHCFSGLQELDLTATHLSEL------------------------P-SGLVGLSTLKKLVLSANKFE  314 (606)
T ss_dssp             -------------TTTTCTTCSEEECTTSCCSCC------------------------C-SSCCSCTTCCEEECTTCCCS
T ss_pred             -------------HhccccCCCEEeccCCccCCC------------------------C-hhhcccccCCEEECccCCcC
Confidence                         223333444444443331110                        0 00122344444444444443


Q ss_pred             eeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCc-cCCCCCCccEEEecCCC
Q 002129          482 YIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYGCR  560 (962)
Q Consensus       482 ~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~-~~~~l~~L~~L~l~~~~  560 (962)
                      .+.   +..+..+                              ++|++|++++|.....+|. .+..+++|++|++++|.
T Consensus       315 ~~~---~~~~~~l------------------------------~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  361 (606)
T 3t6q_A          315 NLC---QISASNF------------------------------PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD  361 (606)
T ss_dssp             BGG---GGCGGGC------------------------------TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred             cCc---hhhhhcc------------------------------CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence            221   1122333                              4555555555544433332 25555666666666544


Q ss_pred             Ccccc--C-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccC--CCCCCCCceEEecccCCCc
Q 002129          561 SLVSF--P-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAG--VQLPPSLKRLKICHCDNIR  635 (962)
Q Consensus       561 ~l~~~--~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~  635 (962)
                      .....  + .+..+++|++|++++|......+..+  ..+++|++|++++|......+.  ...+++|+.|++++|.--.
T Consensus       362 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  439 (606)
T 3t6q_A          362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF--KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI  439 (606)
T ss_dssp             CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT--TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT
T ss_pred             cccccCcchhcccCCCCCEEECCCCcCCcCCHHHh--cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC
Confidence            33221  1 24445566666666655322222222  4556666666666433222222  1233455555555543111


Q ss_pred             cccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCchhh---hhhccC
Q 002129          636 TLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESI---AEMLDN  712 (962)
Q Consensus       636 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~---~~~~~~  712 (962)
                      ..+                                       ..+.     .+ ++|++|++++|.+.+..   +..+..
T Consensus       440 ~~~---------------------------------------~~~~-----~l-~~L~~L~L~~n~l~~~~~~~~~~~~~  474 (606)
T 3t6q_A          440 SSE---------------------------------------QLFD-----GL-PALQHLNLQGNHFPKGNIQKTNSLQT  474 (606)
T ss_dssp             TCT---------------------------------------TTTT-----TC-TTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred             cCH---------------------------------------HHHh-----CC-CCCCEEECCCCCCCccccccchhhcc
Confidence            101                                       0011     11 67888888888776632   256778


Q ss_pred             CCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccccCCCcccceee
Q 002129          713 NTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELR  792 (962)
Q Consensus       713 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~  792 (962)
                      +++|++|++++|.+.+..|..+.++++|++|++++|......|..+..+++| .|++++|...+..|..+..+++|+.|+
T Consensus       475 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~  553 (606)
T 3t6q_A          475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN  553 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE
T ss_pred             CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe
Confidence            8888888888888777777888888888888888886555566666667788 888888887766677788889999999


Q ss_pred             cCCCCC
Q 002129          793 IGKGVA  798 (962)
Q Consensus       793 l~~~~~  798 (962)
                      +++|+.
T Consensus       554 l~~N~~  559 (606)
T 3t6q_A          554 LRQNPL  559 (606)
T ss_dssp             CTTCCE
T ss_pred             CCCCCc
Confidence            999864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5e-37  Score=363.20  Aligned_cols=153  Identities=14%  Similarity=0.044  Sum_probs=81.6

Q ss_pred             cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccC-ccccCCCCccEEEcccCCCcccCCCCCCCcccccccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLP-SGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLA  768 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~  768 (962)
                      ++|++|++++|...+ +|..+..+++|++|++++|...+..| ..+.++++|++|++++|......|..+..+++|++|+
T Consensus       376 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  454 (606)
T 3vq2_A          376 NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK  454 (606)
T ss_dssp             SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             CcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence            456666666665333 44556666666666666666555544 4556666666666666654444555555556666666


Q ss_pred             cccccccc-cCccccCCCcccceeecCCCCCCCCCCC-CCCCCccceEeecCchhhhHHHHhccccccccCccceeeccc
Q 002129          769 IYNCKRLE-ALPKGLHNLKSLQELRIGKGVALPSLEE-DGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMN  846 (962)
Q Consensus       769 l~~c~~l~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  846 (962)
                      +++|...+ .+|..++.+++|++|++++|......+. ...+++|++|++++|.+....+    ..+..+++|++|++++
T Consensus       455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~l~~  530 (606)
T 3vq2_A          455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS----SHYNQLYSLSTLDCSF  530 (606)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG----GGTTTCTTCCEEECTT
T ss_pred             CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH----HHccCCCcCCEEECCC
Confidence            66666444 2455566666666666666632222221 1233444444444444433222    2344455555555555


Q ss_pred             C
Q 002129          847 C  847 (962)
Q Consensus       847 ~  847 (962)
                      |
T Consensus       531 N  531 (606)
T 3vq2_A          531 N  531 (606)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=353.56  Aligned_cols=112  Identities=19%  Similarity=0.070  Sum_probs=83.3

Q ss_pred             CcccccccccCCcccEEEecCCCCccc-CccccCCCcCcEEEcCCC-ccccc-ChhhhccCCccEEecCCCcchhccchh
Q 002129           78 APSMLPKLLKLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGT-EIRTL-PESVSKLYNLHSLLLEDCDRLEKLCAD  154 (962)
Q Consensus        78 ~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n-~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~  154 (962)
                      ...+|.   -.++|++|+|++|.|+.+ |..|+++++|++|+|++| .+..+ |..|+++++|++|+|++|...+..|..
T Consensus        16 L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~   92 (844)
T 3j0a_A           16 LTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA   92 (844)
T ss_dssp             SSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred             CCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence            344554   446888888888888866 677888888888888888 44566 566888888888888886555555778


Q ss_pred             hhccCCCcEEeccCCccccccccc--ccccccccccceee
Q 002129          155 MGNLVKLHHLKNSNTKSLEEMPVG--IGRLTCLQTLCSFV  192 (962)
Q Consensus       155 i~~L~~L~~L~l~~n~~~~~lp~~--~~~L~~L~~L~~~~  192 (962)
                      |+++++|++|++++|.+.+.+|..  ++++++|++|++..
T Consensus        93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~  132 (844)
T 3j0a_A           93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK  132 (844)
T ss_dssp             SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEES
T ss_pred             ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCC
Confidence            888888888888888844445554  77777777776543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-34  Score=337.67  Aligned_cols=111  Identities=17%  Similarity=0.137  Sum_probs=80.5

Q ss_pred             cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccc-cccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNL-QTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLA  768 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~  768 (962)
                      ++|++|++++|...+..+..+.++++|++|++++|... +.+|..+..+++|++|++++|......|..+..+++|++|+
T Consensus       421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  500 (570)
T 2z63_A          421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  500 (570)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence            57777777777777777777778888888888887766 45677777788888888888754444466666677788888


Q ss_pred             cccccccccCccccCCCcccceeecCCCCCCC
Q 002129          769 IYNCKRLEALPKGLHNLKSLQELRIGKGVALP  800 (962)
Q Consensus       769 l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~  800 (962)
                      +++|...+..|..+.++++|++|++++|+...
T Consensus       501 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            88877555555567777888888888775443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.4e-34  Score=331.92  Aligned_cols=145  Identities=21%  Similarity=0.180  Sum_probs=96.7

Q ss_pred             cCccEEEecCCCCchhhh--hhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccc
Q 002129          690 PSLKLLLVWGCSKLESIA--EMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAML  767 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L  767 (962)
                      ++|++|++++|.+.+..+  ..+..+++|++|++++|.+. .+|..+..+++|++|++++| .++.+|....  ++|+.|
T Consensus       361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~~~--~~L~~L  436 (549)
T 2z81_A          361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST-GIRVVKTCIP--QTLEVL  436 (549)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTS-CCSCCCTTSC--TTCSEE
T ss_pred             ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCC-Ccccccchhc--CCceEE
Confidence            578888888887665432  55788888888888887654 67777888888888888888 4666665432  478888


Q ss_pred             ccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccceeecccC
Q 002129          768 AIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNC  847 (962)
Q Consensus       768 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  847 (962)
                      ++++|...+ ++   ..+++|++|++++| .++.+|....+++|++|++++|.+....+    ..+..+++|++|++++|
T Consensus       437 ~Ls~N~l~~-~~---~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~l~~N  507 (549)
T 2z81_A          437 DVSNNNLDS-FS---LFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRNQLKSVPD----GIFDRLTSLQKIWLHTN  507 (549)
T ss_dssp             ECCSSCCSC-CC---CCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSSCCCCCCT----TGGGGCTTCCEEECCSS
T ss_pred             ECCCCChhh-hc---ccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCCccCCcCH----HHHhcCcccCEEEecCC
Confidence            888886433 22   46778888888887 55566655455666666666665543322    23455555555555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.2e-33  Score=340.12  Aligned_cols=513  Identities=18%  Similarity=0.144  Sum_probs=277.6

Q ss_pred             CCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCC-Cccc-CccccCCCcCcEEEcCCCccccc-Chhhh
Q 002129           57 DIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYR-ILEL-PDSVGDLRYLRYLNLSGTEIRTL-PESVS  132 (962)
Q Consensus        57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~-i~~l-p~~~~~L~~L~~L~Ls~n~i~~l-p~~i~  132 (962)
                      -.+++++|.+..+.       ...+++..+ ++++|++|+|++|. +..+ |..|+++++|++|+|++|.++.+ |..|+
T Consensus        22 lp~~l~~LdLs~N~-------i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~   94 (844)
T 3j0a_A           22 VLNTTERLLLSFNY-------IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ   94 (844)
T ss_dssp             SCTTCCEEEEESCC-------CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred             CCCCcCEEECCCCc-------CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence            34688999887654       344444444 99999999999985 4566 77899999999999999999876 67799


Q ss_pred             ccCCccEEecCCCcchhccchh--hhccCCCcEEeccCCcccccc-c-ccccccccccccceeeecCCCCCCcccccccc
Q 002129          133 KLYNLHSLLLEDCDRLEKLCAD--MGNLVKLHHLKNSNTKSLEEM-P-VGIGRLTCLQTLCSFVVGKDSGSGLRELKLLT  208 (962)
Q Consensus       133 ~L~~L~~L~L~~~~~~~~lp~~--i~~L~~L~~L~l~~n~~~~~l-p-~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~  208 (962)
                      ++++|++|++++|...+.+|..  ++++++|++|++++|. +..+ | ..++++++|++|++..+....           
T Consensus        95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~-----------  162 (844)
T 3j0a_A           95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFL-----------  162 (844)
T ss_dssp             SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCC-----------
T ss_pred             CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCe-----------
Confidence            9999999999997655656665  8899999999999998 4444 3 358888888888654321100           


Q ss_pred             cccceeEEecCCCCcchhhhhhhccCCC--CCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCC
Q 002129          209 QLRGTLCISNLENVKHIVDAEDAQLDRK--ENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFP  286 (962)
Q Consensus       209 ~L~~~l~~~~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p  286 (962)
                                         ..+..+..+  ++|+.|++++|....                                ..|
T Consensus       163 -------------------~~~~~l~~l~~~~L~~L~L~~n~l~~--------------------------------~~~  191 (844)
T 3j0a_A          163 -------------------VCEHELEPLQGKTLSFFSLAANSLYS--------------------------------RVS  191 (844)
T ss_dssp             -------------------CCSGGGHHHHHCSSCCCEECCSBSCC--------------------------------CCC
T ss_pred             -------------------eCHHHcccccCCccceEECCCCcccc--------------------------------ccc
Confidence                               000011111  455555555443211                                111


Q ss_pred             ccccC----CCCCCceEEEEecCCCCCCCC-CC---CCCCCCCeEEEcCCCCceeeCccccCCCCCCCCCCcceeeccCc
Q 002129          287 TWLGD----SSFSKLVTLKFKNCDMCTALP-SV---GQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDL  358 (962)
Q Consensus       287 ~~~~~----~~l~~L~~L~L~~~~~~~~l~-~l---~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~  358 (962)
                      ..+..    .....|+.|++++|.+....+ .+   ...+.++.|.+..+......     +      +.+++.      
T Consensus       192 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~-----~------~~~l~~------  254 (844)
T 3j0a_A          192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF-----G------FHNIKD------  254 (844)
T ss_dssp             CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS-----S------CSSSTT------
T ss_pred             cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc-----c------ccccCC------
Confidence            11110    001136666666665444333 11   12245556655432110000     0      011100      


Q ss_pred             ccccccccCCCCcccccCCCccEEEeccCCcccccCC---CCCCCccEEEEcCcccccc---cCCCCCcceEEEEccCCC
Q 002129          359 QEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFP---EHLPALEMLVIEGCEELLV---SVSSLPALCKFIISGCKK  432 (962)
Q Consensus       359 ~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~~l~~---~~~~l~~L~~L~l~~~~~  432 (962)
                           ......  .....++|+.|++++| .+.+..|   ..+++|+.|++++|.....   .+..+++|+.|++++|..
T Consensus       255 -----~~~~~f--~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l  326 (844)
T 3j0a_A          255 -----PDQNTF--AGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL  326 (844)
T ss_dssp             -----GGGTTT--TTTTTSCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred             -----CChhhh--hccccCCccEEECCCC-cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence                 000000  0112356777777776 4442333   2334444444444432211   334445555555555442


Q ss_pred             ceeeccccCCCCCCcceeccCCccccccCCCCCCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccc
Q 002129          433 VVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLV  512 (962)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~  512 (962)
                      ..                        .....+..+++|++|++++|.+..+.   ...+..+                  
T Consensus       327 ~~------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~l------------------  361 (844)
T 3j0a_A          327 GE------------------------LYSSNFYGLPKVAYIDLQKNHIAIIQ---DQTFKFL------------------  361 (844)
T ss_dssp             SC------------------------CCSCSCSSCTTCCEEECCSCCCCCCC---SSCSCSC------------------
T ss_pred             Cc------------------------cCHHHhcCCCCCCEEECCCCCCCccC---hhhhcCC------------------
Confidence            11                        11112234455555555555443321   2223344                  


Q ss_pred             hhhhHHHHHHHHhhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhh
Q 002129          513 AEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAW  592 (962)
Q Consensus       513 ~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  592 (962)
                                  ++|+.|++++|... .+    ..+++|+.|++++|+ ++.+|..  ..+++.|++++|. ++.++...
T Consensus       362 ------------~~L~~L~Ls~N~l~-~i----~~~~~L~~L~l~~N~-l~~l~~~--~~~l~~L~ls~N~-l~~l~~~~  420 (844)
T 3j0a_A          362 ------------EKLQTLDLRDNALT-TI----HFIPSIPDIFLSGNK-LVTLPKI--NLTANLIHLSENR-LENLDILY  420 (844)
T ss_dssp             ------------CCCCEEEEETCCSC-CC----SSCCSCSEEEEESCC-CCCCCCC--CTTCCEEECCSCC-CCSSTTHH
T ss_pred             ------------CCCCEEECCCCCCC-cc----cCCCCcchhccCCCC-ccccccc--ccccceeecccCc-cccCchhh
Confidence                        44555555554432 12    225667777777653 3344432  4567777777776 44444333


Q ss_pred             hcCCCCCccEEEecCCCCCCcccCC---CCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccc
Q 002129          593 MCDTNSSLEILEISGCDSLTYIAGV---QLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTC  669 (962)
Q Consensus       593 ~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  669 (962)
                      +...+++|++|++++|. ++.++..   ...++|+.|+++++. +..++                               
T Consensus       421 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~-------------------------------  467 (844)
T 3j0a_A          421 FLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENM-LQLAW-------------------------------  467 (844)
T ss_dssp             HHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESCC-CSSSC-------------------------------
T ss_pred             hhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCCc-ccccc-------------------------------
Confidence            22567778888887754 3322221   223556666665542 11111                               


Q ss_pred             cccCCCccccccccccCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCC
Q 002129          670 IFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCG  749 (962)
Q Consensus       670 ~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~  749 (962)
                        +.+..+..+..     + ++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+.  ++|+.|++++|.
T Consensus       468 --~~~~~~~~~~~-----l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~  537 (844)
T 3j0a_A          468 --ETELCWDVFEG-----L-SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQ  537 (844)
T ss_dssp             --CSCCCSSCSSC-----B-CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEEC
T ss_pred             --ccccchhhhcC-----c-ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCc
Confidence              00000111111     1 6778888888877777777778888888888888776554444443  778888888874


Q ss_pred             CcccCCCCCCCcccccccccccccccc
Q 002129          750 NLVSSPEGGLPCAKLAMLAIYNCKRLE  776 (962)
Q Consensus       750 ~l~~~~~~~~~~~~L~~L~l~~c~~l~  776 (962)
                      ..+..|. .  +++|+.|++++|+...
T Consensus       538 l~~~~~~-~--~~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          538 LLAPNPD-V--FVSLSVLDITHNKFIC  561 (844)
T ss_dssp             CCCCCSC-C--CSSCCEEEEEEECCCC
T ss_pred             CCCCChh-H--hCCcCEEEecCCCccc
Confidence            4333333 2  2377788888777543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.6e-34  Score=335.68  Aligned_cols=209  Identities=19%  Similarity=0.161  Sum_probs=143.5

Q ss_pred             cccccccccCCcccEEEecCCCCccc-CccccCCCcCcEEEcCCCcccccC-hhhhccCCccEEecCCCcchhccchhhh
Q 002129           79 PSMLPKLLKLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTLP-ESVSKLYNLHSLLLEDCDRLEKLCADMG  156 (962)
Q Consensus        79 ~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~  156 (962)
                      ..+|+.++  ++|++|+|++|.++.+ |..|+++++|++|+|++|+++.+| ..|+++++|++|++++|...+..|..|+
T Consensus        18 ~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~   95 (549)
T 2z81_A           18 TSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG   95 (549)
T ss_dssp             SSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred             ccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence            45555544  6788888888888866 567888888888888888888775 5688888888888888644343344588


Q ss_pred             ccCCCcEEeccCCcccc--cccccccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccC
Q 002129          157 NLVKLHHLKNSNTKSLE--EMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLD  234 (962)
Q Consensus       157 ~L~~L~~L~l~~n~~~~--~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~  234 (962)
                      ++++|++|++++|. +.  ..|..++++++|++|++..+...                             .......+.
T Consensus        96 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~-----------------------------~~~~~~~~~  145 (549)
T 2z81_A           96 PLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETF-----------------------------SEIRRIDFA  145 (549)
T ss_dssp             TCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSC-----------------------------CEECTTTTT
T ss_pred             cCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccc-----------------------------cccCHhhhh
Confidence            88888888888887 44  34566888888888866443210                             011112356


Q ss_pred             CCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCC----
Q 002129          235 RKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTA----  310 (962)
Q Consensus       235 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~----  310 (962)
                      ++++|++|++++|....         .....+..+++|+.|++.++....+|.++.. .+++|+.|++++|.+.+.    
T Consensus       146 ~l~~L~~L~L~~n~l~~---------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~  215 (549)
T 2z81_A          146 GLTSLNELEIKALSLRN---------YQSQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSP  215 (549)
T ss_dssp             TCCEEEEEEEEETTCCE---------ECTTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCC
T ss_pred             cccccCeeeccCCcccc---------cChhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccc
Confidence            66777777877665321         1234556677788888888877777776643 478888888888876653    


Q ss_pred             CCCCCCCCCCCeEEEcCCC
Q 002129          311 LPSVGQLPSLKHLTVRGMS  329 (962)
Q Consensus       311 l~~l~~l~~L~~L~L~~~~  329 (962)
                      .+....+++|+.|+++++.
T Consensus       216 ~~~~~~~~~L~~L~l~~n~  234 (549)
T 2z81_A          216 LPVDEVSSPMKKLAFRGSV  234 (549)
T ss_dssp             CSSCCCCCCCCEEEEESCE
T ss_pred             cchhhhhhcccceeccccc
Confidence            1234456778888877763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6e-33  Score=326.10  Aligned_cols=106  Identities=18%  Similarity=0.074  Sum_probs=58.2

Q ss_pred             cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccC-ccccCCCCccEEEcccCCCcccCCCCCCCcccccccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLP-SGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLA  768 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~  768 (962)
                      ++|++|++++|...+..+. +..+++|++|++++|...+..+ ..+.++++|++|++++|......|..+..+++|++|+
T Consensus       373 ~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  451 (570)
T 2z63_A          373 TSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK  451 (570)
T ss_dssp             SCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             CccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence            4566666666554443333 5566666666666655544433 3455566666666666644444444444455666666


Q ss_pred             ccccccc-ccCccccCCCcccceeecCCC
Q 002129          769 IYNCKRL-EALPKGLHNLKSLQELRIGKG  796 (962)
Q Consensus       769 l~~c~~l-~~~~~~~~~l~~L~~L~l~~~  796 (962)
                      +++|... +.+|..+..+++|++|++++|
T Consensus       452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n  480 (570)
T 2z63_A          452 MAGNSFQENFLPDIFTELRNLTFLDLSQC  480 (570)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             CcCCcCccccchhhhhcccCCCEEECCCC
Confidence            6666543 245555555666666666655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=9.1e-33  Score=329.28  Aligned_cols=112  Identities=21%  Similarity=0.198  Sum_probs=86.9

Q ss_pred             cCccEEEecCCCCchhhhhhcc--CCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLD--NNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAML  767 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L  767 (962)
                      ++|++|++++|.+. .+|..+.  .+++|+.|+|++|.+.+ +|..+.++++|+.|+|++|+                  
T Consensus       728 ~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------  787 (876)
T 4ecn_A          728 YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------  787 (876)
T ss_dssp             GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------------
T ss_pred             CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC------------------
Confidence            47888888888766 6777776  88999999999988766 78888889999999998874                  


Q ss_pred             ccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhh
Q 002129          768 AIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIW  823 (962)
Q Consensus       768 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~  823 (962)
                      ++++|...+.+|..+.++++|+.|++++|.. ..+|.. ..++|+.|++++|++..
T Consensus       788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS  841 (876)
T ss_dssp             CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred             CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence            5566776777787888888888888888744 667665 34678888888877654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.8e-32  Score=312.14  Aligned_cols=221  Identities=19%  Similarity=0.161  Sum_probs=149.2

Q ss_pred             hhcceeecccccCccccCccC-----CCCCCccEEEecCCCCccccCC--CCC---CCCCcEEEEcCCCCCCCChhhhhc
Q 002129          525 ELLEYLRLSYCEGLVKLPQSS-----LSLSSLREIEIYGCRSLVSFPE--VAL---PSKLKKIEISSCDALKSLPEAWMC  594 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~-----~~l~~L~~L~l~~~~~l~~~~~--~~~---~~~L~~L~l~~~~~l~~~~~~~~~  594 (962)
                      ++|++|++++|...+.+|..+     ..+++|+.+++++|..  .+|.  ...   ..+|+.|++++|.. ..++.  . 
T Consensus       247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~~--~-  320 (520)
T 2z7x_B          247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRM-VHMLC--P-  320 (520)
T ss_dssp             SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCC-CCCCC--C-
T ss_pred             CcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcc-ccccc--h-
Confidence            578888888888776788777     7778888888877654  3441  111   14577777777663 22221  0 


Q ss_pred             CCCCCccEEEecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCC
Q 002129          595 DTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKN  674 (962)
Q Consensus       595 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  674 (962)
                      ..+++|++|++++|.....++.                                                          
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~----------------------------------------------------------  342 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFE----------------------------------------------------------  342 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTT----------------------------------------------------------
T ss_pred             hhCCcccEEEeECCccChhhhh----------------------------------------------------------
Confidence            3455666666666432111111                                                          


Q ss_pred             CccccccccccCCCccCccEEEecCCCCch--hhhhhccCCCCcceEeecCCccccccCcc-ccCCCCccEEEcccCCCc
Q 002129          675 ELPATLESLEVGNLPPSLKLLLVWGCSKLE--SIAEMLDNNTSLEKINISGCGNLQTLPSG-LHNLCQLQEISIASCGNL  751 (962)
Q Consensus       675 ~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l  751 (962)
                          .+     +.+ ++|++|++++|.+.+  .+|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|...
T Consensus       343 ----~~-----~~l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~  412 (520)
T 2z7x_B          343 ----NC-----GHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT  412 (520)
T ss_dssp             ----TC-----CCC-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred             ----hh-----ccC-CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence                00     011 678888888888776  56677888888888998888877756654 677888899999888655


Q ss_pred             ccCCCCCCCcccccccccccccccccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhhh
Q 002129          752 VSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEIW  823 (962)
Q Consensus       752 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~  823 (962)
                      +.+|....  ++|+.|++++|. +..+|..+..+++|++|++++| .++.+|..  ..+++|++|++++|+..-
T Consensus       413 ~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          413 DTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             GGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCcc
Confidence            55555433  588889998887 4578887778889999999888 56666653  446778888888777543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.2e-31  Score=317.75  Aligned_cols=124  Identities=21%  Similarity=0.249  Sum_probs=91.2

Q ss_pred             ceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccChh-hhccCC
Q 002129           60 HLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPES-VSKLYN  136 (962)
Q Consensus        60 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~~  136 (962)
                      .+++|.+..+.       ...+++..| ++++|++|+|++|.|+.+| .+|+++++|++|+|++|+|+.+|.. |+++++
T Consensus        53 ~~~~LdLs~N~-------i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~  125 (635)
T 4g8a_A           53 STKNLDLSFNP-------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  125 (635)
T ss_dssp             TCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred             CCCEEEeeCCC-------CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence            67888776653       456666655 8888888888888888775 4678888888888888888888754 788888


Q ss_pred             ccEEecCCCcchhccch-hhhccCCCcEEeccCCcccc--cccccccccccccccceee
Q 002129          137 LHSLLLEDCDRLEKLCA-DMGNLVKLHHLKNSNTKSLE--EMPVGIGRLTCLQTLCSFV  192 (962)
Q Consensus       137 L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~n~~~~--~lp~~~~~L~~L~~L~~~~  192 (962)
                      |++|++++| .+..+|. .|++|++|++|++++|. +.  .+|..++.+++|++|++..
T Consensus       126 L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~  182 (635)
T 4g8a_A          126 LQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSS  182 (635)
T ss_dssp             CCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCS
T ss_pred             CCEEECCCC-cCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccC
Confidence            888888885 4555554 47888888888888887 44  3456677788888776543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.6e-32  Score=320.32  Aligned_cols=111  Identities=21%  Similarity=0.223  Sum_probs=77.4

Q ss_pred             cCccEEEecCCCCchhhhhhcc--CCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLD--NNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAML  767 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L  767 (962)
                      ++|++|++++|.+. .+|..+.  .+++|+.|++++|.+.+ +|..+.++++|++|++++|+                  
T Consensus       488 ~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~------------------  547 (636)
T 4eco_A          488 YLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR------------------  547 (636)
T ss_dssp             GGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB------------------
T ss_pred             CCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc------------------
Confidence            47888888888776 6676666  88899999999888776 78888888999999987663                  


Q ss_pred             ccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhh
Q 002129          768 AIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEI  822 (962)
Q Consensus       768 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~  822 (962)
                      ++++|...+.+|..+..+++|++|++++|. ++.+|.. ..++|++|++++|++.
T Consensus       548 ~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-~~~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          548 DAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK-ITPNISVLDIKDNPNI  600 (636)
T ss_dssp             CTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCTTCCEEECCSCTTC
T ss_pred             ccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh-HhCcCCEEECcCCCCc
Confidence            344555555666666666666666666663 3555543 2256666666666543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-31  Score=310.84  Aligned_cols=104  Identities=21%  Similarity=0.188  Sum_probs=55.3

Q ss_pred             cCccEEEecCCCCchhhhh-hccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccc
Q 002129          690 PSLKLLLVWGCSKLESIAE-MLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLA  768 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~  768 (962)
                      ++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.+|..+.  ++|++|++++| .++.+|.....+++|++|+
T Consensus       374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~  450 (520)
T 2z7x_B          374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELN  450 (520)
T ss_dssp             TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEE
T ss_pred             CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEE
Confidence            3444444444444443332 244455555555555555444444332  45666666655 4445555544555666666


Q ss_pred             cccccccccCccc-cCCCcccceeecCCCC
Q 002129          769 IYNCKRLEALPKG-LHNLKSLQELRIGKGV  797 (962)
Q Consensus       769 l~~c~~l~~~~~~-~~~l~~L~~L~l~~~~  797 (962)
                      +++|. +..+|.. +..+++|++|++++|+
T Consensus       451 L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          451 VASNQ-LKSVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             CCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCc-CCccCHHHhccCCcccEEECcCCC
Confidence            66665 3345544 5666777777777764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.3e-32  Score=319.67  Aligned_cols=371  Identities=18%  Similarity=0.172  Sum_probs=184.9

Q ss_pred             CcccccChhhhccCCccEEecCCCcchhc-----------------cchhhh--ccCCCcEEeccCCccccccccccccc
Q 002129          122 TEIRTLPESVSKLYNLHSLLLEDCDRLEK-----------------LCADMG--NLVKLHHLKNSNTKSLEEMPVGIGRL  182 (962)
Q Consensus       122 n~i~~lp~~i~~L~~L~~L~L~~~~~~~~-----------------lp~~i~--~L~~L~~L~l~~n~~~~~lp~~~~~L  182 (962)
                      |+++.+|+.|+++++|++|++++|...+.                 +|+.++  ++++|++|++++|.+.+.+|..++++
T Consensus       193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  272 (636)
T 4eco_A          193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL  272 (636)
T ss_dssp             CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred             CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence            45555666677777777777776543332                 666666  77777777777776566666666666


Q ss_pred             ccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhh-hhhhccCCCCCCCcEEEEeecCCCCchhhhhHhh
Q 002129          183 TCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVD-AEDAQLDRKENLKELWLRWTLYGSYSREAETEMG  261 (962)
Q Consensus       183 ~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  261 (962)
                      ++|++|++..+..                             ... ..+..+.                           
T Consensus       273 ~~L~~L~Ls~n~~-----------------------------l~~~~lp~~~~---------------------------  296 (636)
T 4eco_A          273 PEMQLINVACNRG-----------------------------ISGEQLKDDWQ---------------------------  296 (636)
T ss_dssp             SSCCEEECTTCTT-----------------------------SCHHHHHHHHH---------------------------
T ss_pred             CCCCEEECcCCCC-----------------------------CccccchHHHH---------------------------
Confidence            6666664422110                             000 0111010                           


Q ss_pred             hcccCCCCCCcceEEEeccCCCCCCc--cccCCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCCCceeeCcccc
Q 002129          262 VLDMLKPHTNLEQFCIKGYGGMKFPT--WLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFY  339 (962)
Q Consensus       262 ~l~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~~~~~  339 (962)
                      .+..+..+++|++|+++++....+|.  ++.  .+++|++|++++|.+.+.+|.++.+++|++|++++|.. ..++..+ 
T Consensus       297 ~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~--~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l-~~lp~~l-  372 (636)
T 4eco_A          297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQ--KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQI-TEIPANF-  372 (636)
T ss_dssp             HHHHSGGGGTCCEEECCSSCCSSCCCHHHHT--TCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEE-EECCTTS-
T ss_pred             hhhccccCCCCCEEECCCCcCCccCchhhhc--cCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCcc-ccccHhh-
Confidence            00111223455566666666666676  555  47777777777777665666667777777777776642 2222111 


Q ss_pred             CCCCCCCCCC-cceeeccCcccccccccCCCCcccccCCCccEEEeccCCcccccCCCCCCCccEEEEcCcccccccCCC
Q 002129          340 GDDSPIPFPR-LETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSS  418 (962)
Q Consensus       340 ~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~  418 (962)
                           ..+++ |+.|++.++. +.. ++...  ....+++|++|++++| .+++.+|..++..           ......
T Consensus       373 -----~~l~~~L~~L~Ls~N~-l~~-lp~~~--~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~-----------~~~~~~  431 (636)
T 4eco_A          373 -----CGFTEQVENLSFAHNK-LKY-IPNIF--DAKSVSVMSAIDFSYN-EIGSVDGKNFDPL-----------DPTPFK  431 (636)
T ss_dssp             -----EEECTTCCEEECCSSC-CSS-CCSCC--CTTCSSCEEEEECCSS-CTTTTTTCSSCTT-----------CSSCCC
T ss_pred             -----hhhcccCcEEEccCCc-Ccc-cchhh--hhcccCccCEEECcCC-cCCCcchhhhccc-----------cccccc
Confidence                 11333 4444444322 111 11000  0112335555555555 3433344321100           000013


Q ss_pred             CCcceEEEEccCCCceeeccccCCCCCCcceeccCCccccccCCCCCCCCCcceEEecccccceeecccCCccccCCCcc
Q 002129          419 LPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLK  498 (962)
Q Consensus       419 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~  498 (962)
                      +++|+.|++++|....                        +....+..+++|++|++++|.++                 
T Consensus       432 ~~~L~~L~Ls~N~l~~------------------------lp~~~~~~l~~L~~L~Ls~N~l~-----------------  470 (636)
T 4eco_A          432 GINVSSINLSNNQISK------------------------FPKELFSTGSPLSSINLMGNMLT-----------------  470 (636)
T ss_dssp             CCCEEEEECCSSCCCS------------------------CCTHHHHTTCCCSEEECCSSCCS-----------------
T ss_pred             CCCCCEEECcCCccCc------------------------CCHHHHccCCCCCEEECCCCCCC-----------------
Confidence            3455555555544221                        01111123445555555555444                 


Q ss_pred             EEEEcCCCCccccchhhhHHH---HHHHHhhcceeecccccCccccCccCC--CCCCccEEEecCCCCccccC-CCCCCC
Q 002129          499 SLEIRSCPKLQSLVAEEEKDQ---QQQLYELLEYLRLSYCEGLVKLPQSSL--SLSSLREIEIYGCRSLVSFP-EVALPS  572 (962)
Q Consensus       499 ~L~l~~c~~l~~l~~~~~~~~---~~~l~~~L~~L~ls~~~~l~~~~~~~~--~l~~L~~L~l~~~~~l~~~~-~~~~~~  572 (962)
                                 .++...+...   +.. +++|+.|++++|... .+|..+.  .+++|++|++++|.... +| .+..++
T Consensus       471 -----------~i~~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~  536 (636)
T 4eco_A          471 -----------EIPKNSLKDENENFKN-TYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS  536 (636)
T ss_dssp             -----------BCCSSSSEETTEECTT-GGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCS
T ss_pred             -----------CcCHHHhccccccccc-cCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCC
Confidence                       3332211000   000 025666666665543 5555554  66666666666654333 44 344566


Q ss_pred             CCcEEEEc------CCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCCCCCCCCceEEecccC
Q 002129          573 KLKKIEIS------SCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCD  632 (962)
Q Consensus       573 ~L~~L~l~------~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~  632 (962)
                      +|++|+++      +|...+.+|..+  ..+++|++|++++|.. +.+|.. ..++|+.|++++|+
T Consensus       537 ~L~~L~Ls~N~~ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~  598 (636)
T 4eco_A          537 TLKGFGIRNQRDAQGNRTLREWPEGI--TLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNP  598 (636)
T ss_dssp             SCCEEECCSCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCT
T ss_pred             CCCEEECCCCcccccCcccccChHHH--hcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCC
Confidence            66666663      444455555554  5567777777777543 666654 33677777777764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=2.1e-30  Score=309.18  Aligned_cols=111  Identities=24%  Similarity=0.242  Sum_probs=93.2

Q ss_pred             CcccccccccCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhccch-h
Q 002129           78 APSMLPKLLKLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLCA-D  154 (962)
Q Consensus        78 ~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~  154 (962)
                      ..++|+++-  ..+++|||++|.|+.+| .+|.++++||+|+|++|+|+.+|+ .|++|++|++|+|++| .+..+|. .
T Consensus        43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~  119 (635)
T 4g8a_A           43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGA  119 (635)
T ss_dssp             CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGG
T ss_pred             cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHH
Confidence            345565442  47899999999999986 579999999999999999999975 5999999999999995 5777765 5


Q ss_pred             hhccCCCcEEeccCCccccccccc-ccccccccccceee
Q 002129          155 MGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTLCSFV  192 (962)
Q Consensus       155 i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~~~~  192 (962)
                      |++|++|++|++++|. +..+|.. |+++++|++|++..
T Consensus       120 f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~  157 (635)
T 4g8a_A          120 FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAH  157 (635)
T ss_dssp             GTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCS
T ss_pred             hcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeecccc
Confidence            8999999999999998 7777765 88899998886543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=1.7e-30  Score=309.74  Aligned_cols=50  Identities=18%  Similarity=0.125  Sum_probs=38.6

Q ss_pred             ccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCC
Q 002129          533 SYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDA  584 (962)
Q Consensus       533 s~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~  584 (962)
                      ++|...+.+|..+..+++|+.|++++|.. +.+|.. ..++|+.|++++|+.
T Consensus       790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l  839 (876)
T 4ecn_A          790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPN  839 (876)
T ss_dssp             TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTT
T ss_pred             ccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCC
Confidence            34666777888888899999999998766 777754 346888888888873

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=1.5e-29  Score=295.17  Aligned_cols=129  Identities=20%  Similarity=0.165  Sum_probs=79.5

Q ss_pred             cCccEEEecCCCCch--hhhhhccCCCCcceEeecCCccccccCc-cccCCCCccEEEcccCCCcccCCCCCCCcccccc
Q 002129          690 PSLKLLLVWGCSKLE--SIAEMLDNNTSLEKINISGCGNLQTLPS-GLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAM  766 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~  766 (962)
                      ++|++|++++|.+.+  .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|...+.+|....  ++|+.
T Consensus       377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~  454 (562)
T 3a79_B          377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKV  454 (562)
T ss_dssp             SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSE
T ss_pred             CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCE
Confidence            466666666666554  3445566777777777777666654443 355667777777777654444443322  46777


Q ss_pred             cccccccccccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhh
Q 002129          767 LAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEI  822 (962)
Q Consensus       767 L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~  822 (962)
                      |++++|. +..+|..+..+++|++|++++| .++.+|..  ..+++|+.|++++|+..
T Consensus       455 L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          455 LDLHNNR-IMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             EECCSSC-CCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             EECCCCc-CcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence            7777775 4566666667777777777776 44455542  44566777777776654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=2.8e-29  Score=292.98  Aligned_cols=120  Identities=24%  Similarity=0.192  Sum_probs=76.1

Q ss_pred             CceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCccccc-ChhhhccCC
Q 002129           59 QHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTL-PESVSKLYN  136 (962)
Q Consensus        59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~l-p~~i~~L~~  136 (962)
                      ...+++.+.++.       ...+|.+++  ++|++|++++|.++.+| ..|+++++|++|+|++|.++.+ |..|+++++
T Consensus        31 ~~~~~l~ls~~~-------L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  101 (562)
T 3a79_B           31 ELESMVDYSNRN-------LTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD  101 (562)
T ss_dssp             --CCEEECTTSC-------CCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred             CCCcEEEcCCCC-------CccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence            334556554432       334555443  67777777777777664 4677777777777777777766 455777777


Q ss_pred             ccEEecCCCcchhccchhhhccCCCcEEeccCCccccccc--cccccccccccccee
Q 002129          137 LHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMP--VGIGRLTCLQTLCSF  191 (962)
Q Consensus       137 L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp--~~~~~L~~L~~L~~~  191 (962)
                      |++|++++| .+..+|..  .+++|++|++++|. +..+|  ..++++++|++|++.
T Consensus       102 L~~L~Ls~N-~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~  154 (562)
T 3a79_B          102 LEYLDVSHN-RLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLS  154 (562)
T ss_dssp             CCEEECTTS-CCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEE
T ss_pred             CCEEECCCC-cCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecC
Confidence            777777774 45567665  67777777777776 44433  456666666666543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=1.7e-29  Score=283.78  Aligned_cols=116  Identities=25%  Similarity=0.284  Sum_probs=66.2

Q ss_pred             ccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCC
Q 002129          492 QDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALP  571 (962)
Q Consensus       492 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  571 (962)
                      ..+++|++|++++ +.++.++..         +++|++|++++|... .+|. +..+++|++|++++|. ++.+|.  .+
T Consensus       192 ~~l~~L~~L~l~~-N~l~~l~~~---------~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~-l~~l~~--~~  256 (454)
T 1jl5_A          192 QNLPFLTAIYADN-NSLKKLPDL---------PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNL-LKTLPD--LP  256 (454)
T ss_dssp             TTCTTCCEEECCS-SCCSSCCCC---------CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSC-CSSCCS--CC
T ss_pred             cCCCCCCEEECCC-CcCCcCCCC---------cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCc-CCcccc--cc
Confidence            4455555555555 233333322         156777777776543 5663 6777888888888753 444553  34


Q ss_pred             CCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCCCCCCCCceEEeccc
Q 002129          572 SKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHC  631 (962)
Q Consensus       572 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~  631 (962)
                      ++|++|++++|. ++.+|.     ..++|++|++++| .++.++.  .+++|+.|++++|
T Consensus       257 ~~L~~L~l~~N~-l~~l~~-----~~~~L~~L~ls~N-~l~~l~~--~~~~L~~L~l~~N  307 (454)
T 1jl5_A          257 PSLEALNVRDNY-LTDLPE-----LPQSLTFLDVSEN-IFSGLSE--LPPNLYYLNASSN  307 (454)
T ss_dssp             TTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSS-CCSEESC--CCTTCCEEECCSS
T ss_pred             cccCEEECCCCc-ccccCc-----ccCcCCEEECcCC-ccCcccC--cCCcCCEEECcCC
Confidence            677777777776 444543     2366777777774 3333332  2345555555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=7.5e-29  Score=278.48  Aligned_cols=80  Identities=16%  Similarity=0.161  Sum_probs=39.2

Q ss_pred             ccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCccc-ccChhhhccCCccEEecCCCcchhccchhhhccCCCcEE
Q 002129           86 LKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIR-TLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHL  164 (962)
Q Consensus        86 ~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L  164 (962)
                      ...++|++|++++|.++.+|++|+++++|++|++++|.+. .+|.+++++++|+++++++|..           .++++|
T Consensus         8 ~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L   76 (454)
T 1jl5_A            8 VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL   76 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred             cccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence            3567888888888888888888888888888888888877 7788888888876666665531           456777


Q ss_pred             eccCCcccccccc
Q 002129          165 KNSNTKSLEEMPV  177 (962)
Q Consensus       165 ~l~~n~~~~~lp~  177 (962)
                      ++++|. +..+|.
T Consensus        77 ~l~~~~-l~~lp~   88 (454)
T 1jl5_A           77 ELNNLG-LSSLPE   88 (454)
T ss_dssp             ECTTSC-CSCCCS
T ss_pred             EecCCc-cccCCC
Confidence            777776 555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.95  E-value=1.6e-27  Score=267.88  Aligned_cols=98  Identities=23%  Similarity=0.249  Sum_probs=75.5

Q ss_pred             ccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCC
Q 002129           82 LPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKL  161 (962)
Q Consensus        82 ~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L  161 (962)
                      +..+..+++|++|++++|.++.+| .++.+++|++|+|++|.++.+|  ++.+++|++|++++| .+..+|  ++.+++|
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L  108 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKL  108 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTC
T ss_pred             ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcC
Confidence            344558889999999999888887 6888899999999999988886  888889999999885 455554  8888889


Q ss_pred             cEEeccCCccccccccccccccccccc
Q 002129          162 HHLKNSNTKSLEEMPVGIGRLTCLQTL  188 (962)
Q Consensus       162 ~~L~l~~n~~~~~lp~~~~~L~~L~~L  188 (962)
                      ++|++++|. +..+|  ++.+++|++|
T Consensus       109 ~~L~L~~N~-l~~l~--~~~l~~L~~L  132 (457)
T 3bz5_A          109 TYLNCDTNK-LTKLD--VSQNPLLTYL  132 (457)
T ss_dssp             CEEECCSSC-CSCCC--CTTCTTCCEE
T ss_pred             CEEECCCCc-CCeec--CCCCCcCCEE
Confidence            999988887 54443  4444444444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=2.2e-26  Score=261.77  Aligned_cols=109  Identities=17%  Similarity=-0.002  Sum_probs=57.5

Q ss_pred             cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAI  769 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l  769 (962)
                      ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..|..+.++++|++|++++|......|..+..+++|++|++
T Consensus       299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  378 (455)
T 3v47_A          299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL  378 (455)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence            45555555555555555555555555555555555554444555555556666666655333333444444555555555


Q ss_pred             ccccccccCccccCCCcccceeecCCCCC
Q 002129          770 YNCKRLEALPKGLHNLKSLQELRIGKGVA  798 (962)
Q Consensus       770 ~~c~~l~~~~~~~~~l~~L~~L~l~~~~~  798 (962)
                      ++|...+..+..+..+++|++|++++|+.
T Consensus       379 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          379 DTNQLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCccccCCHhHhccCCcccEEEccCCCc
Confidence            55553322222345566666666666643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=2.4e-25  Score=252.89  Aligned_cols=78  Identities=15%  Similarity=0.175  Sum_probs=48.3

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE  604 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  604 (962)
                      ++|+.|++++|......|  +..+++|++|++++| .++.++.+..+++|+.|++++|...+..|  .  ..+++|+.|+
T Consensus       309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~  381 (466)
T 1o6v_A          309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQISDLTP--L--ANLTRITQLG  381 (466)
T ss_dssp             TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCBCGG--G--TTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCchh--hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCccCccch--h--hcCCCCCEEe
Confidence            555555555555433333  456677777777775 44445566667777777777776433333  2  6677788888


Q ss_pred             ecCCC
Q 002129          605 ISGCD  609 (962)
Q Consensus       605 l~~c~  609 (962)
                      +++|+
T Consensus       382 l~~n~  386 (466)
T 1o6v_A          382 LNDQA  386 (466)
T ss_dssp             CCCEE
T ss_pred             ccCCc
Confidence            77753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=3.7e-25  Score=251.57  Aligned_cols=366  Identities=15%  Similarity=0.129  Sum_probs=232.3

Q ss_pred             cccccCCCCCCCccEEEEcCccccc---ccCCCCCcceEEEEccCCCceeeccccCCCCCCcceeccCCccccccCCCCC
Q 002129          389 KLKGTFPEHLPALEMLVIEGCEELL---VSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKP  465 (962)
Q Consensus       389 ~l~~~~p~~l~~L~~L~l~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (962)
                      .++ .+|...++|++|++++|....   ..+..+++|++|++++|.....                       +....+.
T Consensus        21 ~l~-~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------------i~~~~~~   76 (455)
T 3v47_A           21 GLH-QVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV-----------------------IRNNTFR   76 (455)
T ss_dssp             CCS-SCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE-----------------------ECTTTTT
T ss_pred             Ccc-cCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccce-----------------------ECccccc
Confidence            444 555544566666666665332   2566788888888888764321                       1223345


Q ss_pred             CCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccc-cchhhhHHHHHHHHhhcceeecccccCccccCcc
Q 002129          466 QLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQS-LVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQS  544 (962)
Q Consensus       466 ~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~  544 (962)
                      .+++|++|++++|.++.+.   +..+..+++|++|++++| .++. ++...   .+..+ ++|++|++++|......|..
T Consensus        77 ~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~~~~---~~~~l-~~L~~L~L~~n~l~~~~~~~  148 (455)
T 3v47_A           77 GLSSLIILKLDYNQFLQLE---TGAFNGLANLEVLTLTQC-NLDGAVLSGN---FFKPL-TSLEMLVLRDNNIKKIQPAS  148 (455)
T ss_dssp             TCTTCCEEECTTCTTCEEC---TTTTTTCTTCCEEECTTS-CCBTHHHHSS---TTTTC-TTCCEEECCSSBCCSCCCCG
T ss_pred             ccccCCEEeCCCCccCccC---hhhccCcccCCEEeCCCC-CCCccccCcc---cccCc-ccCCEEECCCCccCccCccc
Confidence            6889999999998887652   445677888888888885 3433 22111   12222 77888888887766655654


Q ss_pred             -CCCCCCccEEEecCCCCccccCC-CCC--CCCCcEEEEcCCCCCCCChhhhh-------cCCCCCccEEEecCCCCCCc
Q 002129          545 -SLSLSSLREIEIYGCRSLVSFPE-VAL--PSKLKKIEISSCDALKSLPEAWM-------CDTNSSLEILEISGCDSLTY  613 (962)
Q Consensus       545 -~~~l~~L~~L~l~~~~~l~~~~~-~~~--~~~L~~L~l~~~~~l~~~~~~~~-------~~~l~~L~~L~l~~c~~l~~  613 (962)
                       +..+++|++|++++|......+. +..  ..+|+.|++++|. +..++..++       ...+++|++|++++|.....
T Consensus       149 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  227 (455)
T 3v47_A          149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES  227 (455)
T ss_dssp             GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH
T ss_pred             ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCccccc
Confidence             67778888888887654433332 222  2567778887776 444332211       02446777777777543332


Q ss_pred             ccCC----CCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCC-C
Q 002129          614 IAGV----QLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGN-L  688 (962)
Q Consensus       614 ~~~~----~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~-l  688 (962)
                      .+..    ...++|+.|+++++.......                                 ....++.. ....+.. -
T Consensus       228 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------------------------------~~~~~~~~-~~~~~~~~~  273 (455)
T 3v47_A          228 MAKRFFDAIAGTKIQSLILSNSYNMGSSF---------------------------------GHTNFKDP-DNFTFKGLE  273 (455)
T ss_dssp             HHHHHHHHTTTCCEEEEECTTCTTTSCCT---------------------------------TCCSSCCC-CTTTTGGGT
T ss_pred             chhhhhccccccceeeEeecccccccccc---------------------------------chhhhccC-ccccccccc
Confidence            2211    122466666666654322111                                 11000000 0000000 0


Q ss_pred             ccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccc
Q 002129          689 PPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLA  768 (962)
Q Consensus       689 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~  768 (962)
                      .++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+.++++|++|++++|......|..+..+++|++|+
T Consensus       274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            16899999999998888888899999999999999988887788889999999999999854333345556678999999


Q ss_pred             cccccccccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhh
Q 002129          769 IYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEI  822 (962)
Q Consensus       769 l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~  822 (962)
                      +++|...+..|..+..+++|++|++++| .++.++..  ..+++|++|++++|++.
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcc
Confidence            9999876666778888999999999988 55555542  34566666666666543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=2.2e-25  Score=250.46  Aligned_cols=331  Identities=19%  Similarity=0.159  Sum_probs=216.8

Q ss_pred             ccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhh
Q 002129           53 GDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVS  132 (962)
Q Consensus        53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~  132 (962)
                      ..+.++++|++|.+.++.       ...+| .+..+++|++|++++|.++.+|  ++.+++|++|++++|.++.+|  ++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~-------l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~  103 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSS-------ITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VT  103 (457)
T ss_dssp             EEHHHHTTCCEEECCSSC-------CCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CT
T ss_pred             cChhHcCCCCEEEccCCC-------cccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cC
Confidence            345677888888876653       23333 5568889999999999888875  888899999999999888875  88


Q ss_pred             ccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccccceeeecCCCCCCcccccccccccc
Q 002129          133 KLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRG  212 (962)
Q Consensus       133 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~  212 (962)
                      ++++|++|++++| .+..+|  ++.+++|++|++++|. +..++  ++++++|++|++..+.....              
T Consensus       104 ~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~--------------  163 (457)
T 3bz5_A          104 PLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITK--------------  163 (457)
T ss_dssp             TCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCC--------------
T ss_pred             CCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCcccc--------------
Confidence            8899999999985 455565  8888999999999888 66554  77788888775533211000              


Q ss_pred             eeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCC
Q 002129          213 TLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDS  292 (962)
Q Consensus       213 ~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~  292 (962)
                                      .  .+..+++|+.|++++|.....           + +..+++|+.|+++++....++  +.  
T Consensus       164 ----------------~--~~~~l~~L~~L~ls~n~l~~l-----------~-l~~l~~L~~L~l~~N~l~~~~--l~--  209 (457)
T 3bz5_A          164 ----------------L--DVTPQTQLTTLDCSFNKITEL-----------D-VSQNKLLNRLNCDTNNITKLD--LN--  209 (457)
T ss_dssp             ----------------C--CCTTCTTCCEEECCSSCCCCC-----------C-CTTCTTCCEEECCSSCCSCCC--CT--
T ss_pred             ----------------c--ccccCCcCCEEECCCCcccee-----------c-cccCCCCCEEECcCCcCCeec--cc--
Confidence                            0  145567777777776653321           1 556678888888888777663  32  


Q ss_pred             CCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCCcc
Q 002129          293 SFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQG  372 (962)
Q Consensus       293 ~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  372 (962)
                      .+++|+.|++++|.+.+ +| ++.+++|++|++++|... .+.        ...+++|+.|.+..               
T Consensus       210 ~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~-~~~--------~~~l~~L~~L~l~~---------------  263 (457)
T 3bz5_A          210 QNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLT-ELD--------VSTLSKLTTLHCIQ---------------  263 (457)
T ss_dssp             TCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCS-CCC--------CTTCTTCCEEECTT---------------
T ss_pred             cCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCC-CcC--------HHHCCCCCEEeccC---------------
Confidence            57888888888888766 45 778888888888887532 221        23367777666532               


Q ss_pred             cccCCCccEEEeccCCcccccCC-CCCCCccEEEEcCcccccccCCCCCcceEEEEccCCCceeeccccCCCCCCcceec
Q 002129          373 VERFPKLRELRILRCSKLKGTFP-EHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCR  451 (962)
Q Consensus       373 ~~~~~~L~~L~l~~c~~l~~~~p-~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  451 (962)
                          .+|+.|++++|..+. .+| ..+++|+.|++++|..+.......++|+.++++                       
T Consensus       264 ----n~L~~L~l~~n~~~~-~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~-----------------------  315 (457)
T 3bz5_A          264 ----TDLLEIDLTHNTQLI-YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS-----------------------  315 (457)
T ss_dssp             ----CCCSCCCCTTCTTCC-EEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCT-----------------------
T ss_pred             ----CCCCEEECCCCccCC-cccccccccCCEEECCCCcccceeccCCCcceEechh-----------------------
Confidence                345666666664332 444 344566666666655443322233344433332                       


Q ss_pred             cCCccccccCCCCCCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceee
Q 002129          452 DTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLR  531 (962)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~  531 (962)
                                    .+++|++|++++|+++++.      +..+++|+.|++++ +.+..+             +.|..|+
T Consensus       316 --------------~~~~L~~L~L~~N~l~~l~------l~~l~~L~~L~l~~-N~l~~l-------------~~L~~L~  361 (457)
T 3bz5_A          316 --------------QNPKLVYLYLNNTELTELD------VSHNTKLKSLSCVN-AHIQDF-------------SSVGKIP  361 (457)
T ss_dssp             --------------TCTTCCEEECTTCCCSCCC------CTTCTTCSEEECCS-SCCCBC-------------TTGGGSS
T ss_pred             --------------hcccCCEEECCCCcccccc------cccCCcCcEEECCC-CCCCCc-------------ccccccc
Confidence                          2346777888887777641      45667777777776 555543             4455566


Q ss_pred             cccccC
Q 002129          532 LSYCEG  537 (962)
Q Consensus       532 ls~~~~  537 (962)
                      +++|..
T Consensus       362 l~~n~l  367 (457)
T 3bz5_A          362 ALNNNF  367 (457)
T ss_dssp             GGGTSE
T ss_pred             ccCCcE
Confidence            655543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=1.2e-24  Score=247.09  Aligned_cols=349  Identities=17%  Similarity=0.204  Sum_probs=220.1

Q ss_pred             CCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccC
Q 002129          466 QLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSS  545 (962)
Q Consensus       466 ~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~  545 (962)
                      .++++++|++.++.+..+..     +..+++|++|++++| .++.++.      +..+ ++|++|++++|......+  +
T Consensus        44 ~l~~l~~L~l~~~~i~~l~~-----~~~l~~L~~L~Ls~n-~l~~~~~------~~~l-~~L~~L~l~~n~l~~~~~--~  108 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNN-QLTDITP------LKNL-TKLVDILMNNNQIADITP--L  108 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCTT-----GGGCTTCCEEECCSS-CCCCCGG------GTTC-TTCCEEECCSSCCCCCGG--G
T ss_pred             HhccccEEecCCCCCccCcc-----hhhhcCCCEEECCCC-ccCCchh------hhcc-ccCCEEECCCCccccChh--h
Confidence            35678888888887765531     466788888888874 4555543      1222 777888887776544333  6


Q ss_pred             CCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCCCCCCCCce
Q 002129          546 LSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKR  625 (962)
Q Consensus       546 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~  625 (962)
                      ..+++|++|++++| .++.++.+..+++|++|++++|. +..++. +  ..+++|++|++++  .+..++....+++|+.
T Consensus       109 ~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~--~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~  181 (466)
T 1o6v_A          109 ANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNT-ISDISA-L--SGLTSLQQLSFGN--QVTDLKPLANLTTLER  181 (466)
T ss_dssp             TTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEEEEEEE-ECCCGG-G--TTCTTCSEEEEEE--SCCCCGGGTTCTTCCE
T ss_pred             cCCCCCCEEECCCC-CCCCChHHcCCCCCCEEECCCCc-cCCChh-h--ccCCcccEeecCC--cccCchhhccCCCCCE
Confidence            77778888888775 44555556677778888887776 445543 2  6677777777753  3333333444566666


Q ss_pred             EEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCchh
Q 002129          626 LKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLES  705 (962)
Q Consensus       626 L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~  705 (962)
                      |++++|. ++.++                                        .+..+      ++|++|++++|...+.
T Consensus       182 L~l~~n~-l~~~~----------------------------------------~l~~l------~~L~~L~l~~n~l~~~  214 (466)
T 1o6v_A          182 LDISSNK-VSDIS----------------------------------------VLAKL------TNLESLIATNNQISDI  214 (466)
T ss_dssp             EECCSSC-CCCCG----------------------------------------GGGGC------TTCSEEECCSSCCCCC
T ss_pred             EECcCCc-CCCCh----------------------------------------hhccC------CCCCEEEecCCccccc
Confidence            6666653 22221                                        01111      5777777777766655


Q ss_pred             hhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccccCCC
Q 002129          706 IAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNL  785 (962)
Q Consensus       706 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l  785 (962)
                      .+  ++.+++|++|++++|...+ + ..+..+++|++|++++|. +..++. +..+++|+.|++++|... .++. +..+
T Consensus       215 ~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~l  286 (466)
T 1o6v_A          215 TP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQIS-NISP-LAGL  286 (466)
T ss_dssp             GG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCC-CCGG-GTTC
T ss_pred             cc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCccC-cccc-ccCC
Confidence            44  6667777777777776543 2 346667777777777773 333332 445667777777777643 3333 6677


Q ss_pred             cccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccceeecccCCCCCccCCCCCCCCCCCc
Q 002129          786 KSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGT  865 (962)
Q Consensus       786 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  865 (962)
                      ++|++|++++| .+..++....+++|++|++++|......+      +..+++|++|++++|.  ...++          
T Consensus       287 ~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~--l~~~~----------  347 (466)
T 1o6v_A          287 TALTNLELNEN-QLEDISPISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNK--VSDVS----------  347 (466)
T ss_dssp             TTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSC--CCCCG----------
T ss_pred             CccCeEEcCCC-cccCchhhcCCCCCCEEECcCCcCCCchh------hccCccCCEeECCCCc--cCCch----------
Confidence            77777777777 44555545566777777777776654322      4677888888888863  22221          


Q ss_pred             cccCCCccceEeeccCCCCcccccccccCCCcCeEeccCCCCCccCCC
Q 002129          866 VLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPE  913 (962)
Q Consensus       866 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~  913 (962)
                      .+..+++|++|++++| .+..+++ +..+++|++|++.+|+ +..+|.
T Consensus       348 ~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-~~~~p~  392 (466)
T 1o6v_A          348 SLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQA-WTNAPV  392 (466)
T ss_dssp             GGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCEE-EECCCB
T ss_pred             hhccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCCc-ccCCch
Confidence            2356778888888875 4555544 6778888888888853 444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=1.9e-23  Score=228.05  Aligned_cols=99  Identities=13%  Similarity=0.188  Sum_probs=44.4

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE  604 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  604 (962)
                      ++|++|++++|.. +.++. +..+++|++|++++| .++.++.+..+++|++|++++|. +..++. +  ..+++|++|+
T Consensus        66 ~~L~~L~l~~n~i-~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~l~~n~-i~~~~~-~--~~l~~L~~L~  138 (347)
T 4fmz_A           66 TNLEYLNLNGNQI-TDISP-LSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNEDN-ISDISP-L--ANLTKMYSLN  138 (347)
T ss_dssp             TTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECTTSC-CCCCGG-G--TTCTTCCEEE
T ss_pred             CCccEEEccCCcc-ccchh-hhcCCcCCEEEccCC-cccCchHHcCCCcCCEEECcCCc-ccCchh-h--ccCCceeEEE
Confidence            4444444444432 22222 445555555555554 33334444445555555555554 333333 1  4455555555


Q ss_pred             ecCCCCCCcccCCCCCCCCceEEecc
Q 002129          605 ISGCDSLTYIAGVQLPPSLKRLKICH  630 (962)
Q Consensus       605 l~~c~~l~~~~~~~~~~~L~~L~l~~  630 (962)
                      +++|.....++....+++|+.|++++
T Consensus       139 l~~n~~~~~~~~~~~l~~L~~L~l~~  164 (347)
T 4fmz_A          139 LGANHNLSDLSPLSNMTGLNYLTVTE  164 (347)
T ss_dssp             CTTCTTCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCCCCcccccchhhCCCCcEEEecC
Confidence            55554444433333333444444433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=2e-23  Score=227.91  Aligned_cols=301  Identities=17%  Similarity=0.171  Sum_probs=158.7

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE  604 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  604 (962)
                      ++|++|++++|.. ..++ .+..+++|++|++++| .++.++.+..+++|++|++++|. ++.++. +  ..+++|++|+
T Consensus        44 ~~L~~L~l~~~~i-~~~~-~~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~~-~--~~l~~L~~L~  116 (347)
T 4fmz_A           44 ESITKLVVAGEKV-ASIQ-GIEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDISA-L--QNLTNLRELY  116 (347)
T ss_dssp             TTCSEEECCSSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-G--TTCTTCSEEE
T ss_pred             ccccEEEEeCCcc-ccch-hhhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCchH-H--cCCCcCCEEE
Confidence            6777777777654 3344 3666777777777775 44455556666777777777775 445542 2  5667777777


Q ss_pred             ecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccc
Q 002129          605 ISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE  684 (962)
Q Consensus       605 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~  684 (962)
                      +++|. ++.++....+++|+.|++++|..+..++.                                        +.   
T Consensus       117 l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~----------------------------------------~~---  152 (347)
T 4fmz_A          117 LNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSP----------------------------------------LS---  152 (347)
T ss_dssp             CTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCGG----------------------------------------GT---
T ss_pred             CcCCc-ccCchhhccCCceeEEECCCCCCcccccc----------------------------------------hh---
Confidence            77643 33333333344455555444433322220                                        00   


Q ss_pred             cCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccc
Q 002129          685 VGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKL  764 (962)
Q Consensus       685 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L  764 (962)
                        .+ ++|++|++++|...+..+  +..+++|++|++++|.... ++. +..+++|+.|++++| .+..++. ...+++|
T Consensus       153 --~l-~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L  223 (347)
T 4fmz_A          153 --NM-TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVN-QITDITP-VANMTRL  223 (347)
T ss_dssp             --TC-TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSS-CCCCCGG-GGGCTTC
T ss_pred             --hC-CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccC-CCCCCch-hhcCCcC
Confidence              11 456666666665444333  5566666666666655433 222 555666666666665 2333222 3334555


Q ss_pred             cccccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccceeec
Q 002129          765 AMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTI  844 (962)
Q Consensus       765 ~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  844 (962)
                      ++|++++|.. ..++. +..+++|++|++++| .+..++.                            +..+++|++|++
T Consensus       224 ~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n-~l~~~~~----------------------------~~~l~~L~~L~l  272 (347)
T 4fmz_A          224 NSLKIGNNKI-TDLSP-LANLSQLTWLEIGTN-QISDINA----------------------------VKDLTKLKMLNV  272 (347)
T ss_dssp             CEEECCSSCC-CCCGG-GTTCTTCCEEECCSS-CCCCCGG----------------------------GTTCTTCCEEEC
T ss_pred             CEEEccCCcc-CCCcc-hhcCCCCCEEECCCC-ccCCChh----------------------------HhcCCCcCEEEc
Confidence            5555555552 23332 555555555555555 3333332                            345555666666


Q ss_pred             ccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcccccccccCCCcCeEeccCCCCCccCCCCCCccccceee
Q 002129          845 MNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLS  924 (962)
Q Consensus       845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~  924 (962)
                      ++|.  ...+          .++..+++|++|++++|+--...+..+.++++|++|++++|+ ++.+++....++|++|+
T Consensus       273 ~~n~--l~~~----------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~  339 (347)
T 4fmz_A          273 GSNQ--ISDI----------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSAD  339 (347)
T ss_dssp             CSSC--CCCC----------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEES
T ss_pred             cCCc--cCCC----------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceee
Confidence            5542  1111          112355666666666643222334455666777777777754 55554422336777777


Q ss_pred             ccCCh
Q 002129          925 INRCP  929 (962)
Q Consensus       925 i~~c~  929 (962)
                      +++|+
T Consensus       340 l~~N~  344 (347)
T 4fmz_A          340 FANQV  344 (347)
T ss_dssp             SSCC-
T ss_pred             hhhhc
Confidence            77665

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=4.5e-24  Score=236.81  Aligned_cols=302  Identities=18%  Similarity=0.133  Sum_probs=223.1

Q ss_pred             cCCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccCh-hhh
Q 002129           56 YDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPE-SVS  132 (962)
Q Consensus        56 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~-~i~  132 (962)
                      ..++++|.|.+.++.       ...+|+.++ .+++|++|++++|.++.+| ..|+.+++|++|+|++|.++.+|. .++
T Consensus        42 ~~l~~l~~l~l~~~~-------l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  114 (390)
T 3o6n_A           42 ITLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ  114 (390)
T ss_dssp             GGGCCCSEEEEESCE-------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cccCCceEEEecCCc-------hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence            357889999887654       567888877 8999999999999999875 589999999999999999998864 589


Q ss_pred             ccCCccEEecCCCcchhccchh-hhccCCCcEEeccCCccccccc-ccccccccccccceeeecCCCCCCcccccccccc
Q 002129          133 KLYNLHSLLLEDCDRLEKLCAD-MGNLVKLHHLKNSNTKSLEEMP-VGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQL  210 (962)
Q Consensus       133 ~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~n~~~~~lp-~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L  210 (962)
                      ++++|++|++++| .+..+|.. ++++++|++|++++|. +..++ ..++.+++|++|++..+.... .           
T Consensus       115 ~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-~-----------  180 (390)
T 3o6n_A          115 NVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-V-----------  180 (390)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB-C-----------
T ss_pred             CCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc-c-----------
Confidence            9999999999995 57788876 5899999999999998 55555 458999999999764432111 0           


Q ss_pred             cceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCcccc
Q 002129          211 RGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLG  290 (962)
Q Consensus       211 ~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~  290 (962)
                                           .+..+++|+.|++++|..              ..+...+.|++|+++++....+|... 
T Consensus       181 ---------------------~~~~l~~L~~L~l~~n~l--------------~~~~~~~~L~~L~l~~n~l~~~~~~~-  224 (390)
T 3o6n_A          181 ---------------------DLSLIPSLFHANVSYNLL--------------STLAIPIAVEELDASHNSINVVRGPV-  224 (390)
T ss_dssp             ---------------------CGGGCTTCSEEECCSSCC--------------SEEECCSSCSEEECCSSCCCEEECCC-
T ss_pred             ---------------------ccccccccceeecccccc--------------cccCCCCcceEEECCCCeeeeccccc-
Confidence                                 133455667777765532              22334567888888888777665543 


Q ss_pred             CCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCC
Q 002129          291 DSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSS  370 (962)
Q Consensus       291 ~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  370 (962)
                         +++|+.|++++|.+.+ .+.++.+++|++|++++|........ .+..     +++|+.|++.++. +..+..    
T Consensus       225 ---~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~-----l~~L~~L~L~~n~-l~~~~~----  289 (390)
T 3o6n_A          225 ---NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYH-PFVK-----MQRLERLYISNNR-LVALNL----  289 (390)
T ss_dssp             ---CSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESG-GGTT-----CSSCCEEECCSSC-CCEEEC----
T ss_pred             ---cccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcChh-Hccc-----cccCCEEECCCCc-CcccCc----
Confidence               5688888888887654 36677888888888888764333232 2222     7888888888753 333211    


Q ss_pred             cccccCCCccEEEeccCCcccccCCC---CCCCccEEEEcCcccccccCCCCCcceEEEEccCCC
Q 002129          371 QGVERFPKLRELRILRCSKLKGTFPE---HLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKK  432 (962)
Q Consensus       371 ~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~  432 (962)
                       ....+++|++|++++| .++ .+|.   .+++|++|++++|......+..+++|+.|++++|+.
T Consensus       290 -~~~~l~~L~~L~L~~n-~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          290 -YGQPIPTLKVLDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             -SSSCCTTCCEEECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred             -ccCCCCCCCEEECCCC-cce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCc
Confidence             1356888999998888 665 5553   468888999988887766778889999999998873

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.90  E-value=5.2e-23  Score=235.09  Aligned_cols=294  Identities=19%  Similarity=0.181  Sum_probs=173.7

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccC-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFP-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEIL  603 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L  603 (962)
                      ++++.|++++|......+..+..+++|++|++++|......+ .+..+++|++|++++|. ++.++...+ ..+++|++|
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L  109 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF-TGLSNLTKL  109 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS-TTCTTCCEE
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccc-cCCCCCCEE
Confidence            445555555555444444455556666666666543222212 24445566666666655 444444333 455666666


Q ss_pred             EecCCCCCCcccCC--CCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCcccccc
Q 002129          604 EISGCDSLTYIAGV--QLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLE  681 (962)
Q Consensus       604 ~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~  681 (962)
                      ++++|. ++.++..  ..+++|+.|+++++. +..+..                                      ..+ 
T Consensus       110 ~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--------------------------------------~~~-  148 (477)
T 2id5_A          110 DISENK-IVILLDYMFQDLYNLKSLEVGDND-LVYISH--------------------------------------RAF-  148 (477)
T ss_dssp             ECTTSC-CCEECTTTTTTCTTCCEEEECCTT-CCEECT--------------------------------------TSS-
T ss_pred             ECCCCc-cccCChhHccccccCCEEECCCCc-cceeCh--------------------------------------hhc-
Confidence            666643 2222211  233455555555442 111110                                      000 


Q ss_pred             ccccCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCc
Q 002129          682 SLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPC  761 (962)
Q Consensus       682 ~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~  761 (962)
                          ..+ ++|++|++++|...+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+.+..+|...+..
T Consensus       149 ----~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  223 (477)
T 2id5_A          149 ----SGL-NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG  223 (477)
T ss_dssp             ----TTC-TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred             ----cCC-CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC
Confidence                111 577777777777666666677778888888888777766666677777888888888877777777766666


Q ss_pred             ccccccccccccccccCc-cccCCCcccceeecCCCCCCCCCCC--CCCCCccceEeecCchhhhHHHHhccccccccCc
Q 002129          762 AKLAMLAIYNCKRLEALP-KGLHNLKSLQELRIGKGVALPSLEE--DGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSS  838 (962)
Q Consensus       762 ~~L~~L~l~~c~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  838 (962)
                      .+|+.|++++|. +..+| ..+.++++|++|++++|. +..++.  ...+++|++|++++|.+....+    ..+..+++
T Consensus       224 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~  297 (477)
T 2id5_A          224 LNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEP----YAFRGLNY  297 (477)
T ss_dssp             CCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECT----TTBTTCTT
T ss_pred             ccccEEECcCCc-ccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccceECH----HHhcCccc
Confidence            678888888776 34454 356777888888888774 444433  2445777777777777655433    45677777


Q ss_pred             cceeecccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCC
Q 002129          839 LRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFP  882 (962)
Q Consensus       839 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  882 (962)
                      |+.|++++|  .+..++..        ++..+++|++|++++++
T Consensus       298 L~~L~L~~N--~l~~~~~~--------~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          298 LRVLNVSGN--QLTTLEES--------VFHSVGNLETLILDSNP  331 (477)
T ss_dssp             CCEEECCSS--CCSCCCGG--------GBSCGGGCCEEECCSSC
T ss_pred             CCEEECCCC--cCceeCHh--------HcCCCcccCEEEccCCC
Confidence            888888776  33333332        23456777777777754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=6.4e-23  Score=227.49  Aligned_cols=313  Identities=16%  Similarity=0.174  Sum_probs=246.8

Q ss_pred             CCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCcc
Q 002129          465 PQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQS  544 (962)
Q Consensus       465 ~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~  544 (962)
                      ..+++++.++++++.+..+   +...+..+++|++|++++ +.++.++...    +..+ ++|++|++++|......|..
T Consensus        42 ~~l~~l~~l~l~~~~l~~l---~~~~~~~l~~L~~L~L~~-n~i~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~  112 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKL---PAALLDSFRQVELLNLND-LQIEEIDTYA----FAYA-HTIQKLYMGFNAIRYLPPHV  112 (390)
T ss_dssp             GGGCCCSEEEEESCEESEE---CTHHHHHCCCCSEEECTT-SCCCEECTTT----TTTC-TTCCEEECCSSCCCCCCTTT
T ss_pred             cccCCceEEEecCCchhhC---ChhHhcccccCcEEECCC-CcccccChhh----ccCC-CCcCEEECCCCCCCcCCHHH
Confidence            3568999999999887765   445578899999999999 4677776543    2333 89999999999877777778


Q ss_pred             CCCCCCccEEEecCCCCccccCC--CCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCCCCCCC
Q 002129          545 SLSLSSLREIEIYGCRSLVSFPE--VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPS  622 (962)
Q Consensus       545 ~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  622 (962)
                      +..+++|++|++++| .++.+|.  +..+++|++|++++|. +..++...+ ..+++|++|++++| .++.++. ..+++
T Consensus       113 ~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~-~~l~~  187 (390)
T 3o6n_A          113 FQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSN-RLTHVDL-SLIPS  187 (390)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-SSCTTCCEEECCSS-CCSBCCG-GGCTT
T ss_pred             hcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhc-cCCCCCCEEECCCC-cCCcccc-ccccc
Confidence            899999999999997 4556765  4678999999999998 455544433 78899999999995 4555432 45579


Q ss_pred             CceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCC
Q 002129          623 LKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSK  702 (962)
Q Consensus       623 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~  702 (962)
                      |+.++++++. ++.++.             .+.|+.|+++++.- .. ++.             ..+++|+.|++++|..
T Consensus       188 L~~L~l~~n~-l~~~~~-------------~~~L~~L~l~~n~l-~~-~~~-------------~~~~~L~~L~l~~n~l  238 (390)
T 3o6n_A          188 LFHANVSYNL-LSTLAI-------------PIAVEELDASHNSI-NV-VRG-------------PVNVELTILKLQHNNL  238 (390)
T ss_dssp             CSEEECCSSC-CSEEEC-------------CSSCSEEECCSSCC-CE-EEC-------------CCCSSCCEEECCSSCC
T ss_pred             cceeeccccc-ccccCC-------------CCcceEEECCCCee-ee-ccc-------------cccccccEEECCCCCC
Confidence            9999998873 433331             24688898887642 22 111             1127999999999988


Q ss_pred             chhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCcccc
Q 002129          703 LESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGL  782 (962)
Q Consensus       703 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  782 (962)
                      .+.  ..+..+++|++|++++|.+.+..|..+..+++|++|++++| .++.+|.....+++|+.|++++|. +..+|..+
T Consensus       239 ~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~  314 (390)
T 3o6n_A          239 TDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ  314 (390)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGH
T ss_pred             ccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccc
Confidence            764  57899999999999999988888899999999999999998 677788777778999999999997 56788888


Q ss_pred             CCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHH
Q 002129          783 HNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSM  826 (962)
Q Consensus       783 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~  826 (962)
                      ..+++|++|++++|+ +..++ ...+++|++|++++|+......
T Consensus       315 ~~l~~L~~L~L~~N~-i~~~~-~~~~~~L~~L~l~~N~~~~~~~  356 (390)
T 3o6n_A          315 PQFDRLENLYLDHNS-IVTLK-LSTHHTLKNLTLSHNDWDCNSL  356 (390)
T ss_dssp             HHHTTCSEEECCSSC-CCCCC-CCTTCCCSEEECCSSCEEHHHH
T ss_pred             cccCcCCEEECCCCc-cceeC-chhhccCCEEEcCCCCccchhH
Confidence            899999999999994 56665 4567899999999999876544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.90  E-value=2.4e-22  Score=229.59  Aligned_cols=277  Identities=21%  Similarity=0.192  Sum_probs=185.9

Q ss_pred             CCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCcc
Q 002129          465 PQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQS  544 (962)
Q Consensus       465 ~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~  544 (962)
                      ..+++|++|++++|.++.+.   +..+..+++|++|++++ +.++.++...    +..+ ++|++|++++|......+..
T Consensus        53 ~~l~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~L~~-n~l~~~~~~~----~~~l-~~L~~L~Ls~n~i~~~~~~~  123 (477)
T 2id5_A           53 ASFPHLEELELNENIVSAVE---PGAFNNLFNLRTLGLRS-NRLKLIPLGV----FTGL-SNLTKLDISENKIVILLDYM  123 (477)
T ss_dssp             TTCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECCS-SCCCSCCTTS----STTC-TTCCEEECTTSCCCEECTTT
T ss_pred             cCCCCCCEEECCCCccCEeC---hhhhhCCccCCEEECCC-CcCCccCccc----ccCC-CCCCEEECCCCccccCChhH
Confidence            45566666666666655442   33456667777777766 4555555432    1222 77888888887776666777


Q ss_pred             CCCCCCccEEEecCCCCccccC-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCC--CCCC
Q 002129          545 SLSLSSLREIEIYGCRSLVSFP-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGV--QLPP  621 (962)
Q Consensus       545 ~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~  621 (962)
                      +..+++|++|++++|......+ .+..+++|++|++++|. ++.++...+ ..+++|+.|++++|. +..++..  ..++
T Consensus       124 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l-~~l~~L~~L~l~~n~-i~~~~~~~~~~l~  200 (477)
T 2id5_A          124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEAL-SHLHGLIVLRLRHLN-INAIRDYSFKRLY  200 (477)
T ss_dssp             TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHH-TTCTTCCEEEEESCC-CCEECTTCSCSCT
T ss_pred             ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHh-cccCCCcEEeCCCCc-CcEeChhhcccCc
Confidence            8888888888888865433222 45667888888888887 566665544 778888888888853 3444332  3345


Q ss_pred             CCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCC
Q 002129          622 SLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCS  701 (962)
Q Consensus       622 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~  701 (962)
                      +|+.|++++|..+..++..                                  .+          .. .+|++|++++|.
T Consensus       201 ~L~~L~l~~~~~~~~~~~~----------------------------------~~----------~~-~~L~~L~l~~n~  235 (477)
T 2id5_A          201 RLKVLEISHWPYLDTMTPN----------------------------------CL----------YG-LNLTSLSITHCN  235 (477)
T ss_dssp             TCCEEEEECCTTCCEECTT----------------------------------TT----------TT-CCCSEEEEESSC
T ss_pred             ccceeeCCCCccccccCcc----------------------------------cc----------cC-ccccEEECcCCc
Confidence            6666666665544443310                                  00          00 478888888887


Q ss_pred             CchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccc
Q 002129          702 KLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKG  781 (962)
Q Consensus       702 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  781 (962)
                      +.+..+..+..+++|+.|++++|.+.+..+..+.++++|++|++++|......|..+..+++|+.|++++|......+..
T Consensus       236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  315 (477)
T 2id5_A          236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV  315 (477)
T ss_dssp             CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred             ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence            76655567888888888888888877666667788888888888888544445556666788888888888754444446


Q ss_pred             cCCCcccceeecCCCCC
Q 002129          782 LHNLKSLQELRIGKGVA  798 (962)
Q Consensus       782 ~~~l~~L~~L~l~~~~~  798 (962)
                      +..+++|++|++++|+.
T Consensus       316 ~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          316 FHSVGNLETLILDSNPL  332 (477)
T ss_dssp             BSCGGGCCEEECCSSCE
T ss_pred             cCCCcccCEEEccCCCc
Confidence            67888888888888753

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=5.1e-23  Score=241.04  Aligned_cols=301  Identities=18%  Similarity=0.138  Sum_probs=219.7

Q ss_pred             CCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccChh-hhc
Q 002129           57 DIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPES-VSK  133 (962)
Q Consensus        57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~~-i~~  133 (962)
                      .+++++.+.+.++.       ...+|+.++ .+++|++|+|++|.++.+| ..|+.+++|++|+|++|.++.+|.. |++
T Consensus        49 ~l~~l~~l~l~~~~-------l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  121 (597)
T 3oja_B           49 TLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN  121 (597)
T ss_dssp             GGCCCSEEEESSCE-------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cCCCceEEEeeCCC-------CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence            56788999886653       567888888 8999999999999999875 5899999999999999999988754 799


Q ss_pred             cCCccEEecCCCcchhccchh-hhccCCCcEEeccCCccccccc-ccccccccccccceeeecCCCCCCccccccccccc
Q 002129          134 LYNLHSLLLEDCDRLEKLCAD-MGNLVKLHHLKNSNTKSLEEMP-VGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLR  211 (962)
Q Consensus       134 L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~n~~~~~lp-~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~  211 (962)
                      +++|++|++++| .+..+|.. |+.+++|++|++++|. +..++ ..++.+++|++|++..+.... .            
T Consensus       122 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-~------------  186 (597)
T 3oja_B          122 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-V------------  186 (597)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB-C------------
T ss_pred             CCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC-c------------
Confidence            999999999995 56677766 5999999999999999 55554 469999999999764432111 0            


Q ss_pred             ceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccC
Q 002129          212 GTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGD  291 (962)
Q Consensus       212 ~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~  291 (962)
                                          .+..+++|+.|++++|..              ..+..++.|+.|+++++....+|..+  
T Consensus       187 --------------------~~~~l~~L~~L~l~~n~l--------------~~l~~~~~L~~L~ls~n~l~~~~~~~--  230 (597)
T 3oja_B          187 --------------------DLSLIPSLFHANVSYNLL--------------STLAIPIAVEELDASHNSINVVRGPV--  230 (597)
T ss_dssp             --------------------CGGGCTTCSEEECCSSCC--------------SEEECCTTCSEEECCSSCCCEEECSC--
T ss_pred             --------------------ChhhhhhhhhhhcccCcc--------------ccccCCchhheeeccCCccccccccc--
Confidence                                123345666666665532              22334567788888887776665543  


Q ss_pred             CCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCCc
Q 002129          292 SSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQ  371 (962)
Q Consensus       292 ~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  371 (962)
                        .++|+.|++++|.+.+ ++.++.+++|++|++++|.........+ +     .+++|+.|++.++ .+..+..     
T Consensus       231 --~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~-----~l~~L~~L~Ls~N-~l~~l~~-----  295 (597)
T 3oja_B          231 --NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPF-V-----KMQRLERLYISNN-RLVALNL-----  295 (597)
T ss_dssp             --CSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGG-T-----TCSSCCEEECTTS-CCCEEEC-----
T ss_pred             --CCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHh-c-----CccCCCEEECCCC-CCCCCCc-----
Confidence              4578888888887654 3567778888888888776443333222 2     2778888888775 2333211     


Q ss_pred             ccccCCCccEEEeccCCcccccCCC---CCCCccEEEEcCcccccccCCCCCcceEEEEccCCC
Q 002129          372 GVERFPKLRELRILRCSKLKGTFPE---HLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKK  432 (962)
Q Consensus       372 ~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~  432 (962)
                      ....+++|+.|++++| .++ .+|.   .+++|+.|++++|......+..+++|+.|++++|+.
T Consensus       296 ~~~~l~~L~~L~Ls~N-~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          296 YGQPIPTLKVLDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             SSSCCTTCCEEECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred             ccccCCCCcEEECCCC-CCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence            1356788888888888 565 5653   467888888888887666777888899999988873

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=4.3e-22  Score=233.19  Aligned_cols=312  Identities=16%  Similarity=0.184  Sum_probs=245.6

Q ss_pred             CCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccC
Q 002129          466 QLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSS  545 (962)
Q Consensus       466 ~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~  545 (962)
                      .+++++.+++++|.+..+   +...+..+++|++|++++ +.+..++...    +..+ ++|+.|++++|......|..+
T Consensus        49 ~l~~l~~l~l~~~~l~~l---p~~~~~~l~~L~~L~L~~-n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~~  119 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKL---PAALLDSFRQVELLNLND-LQIEEIDTYA----FAYA-HTIQKLYMGFNAIRYLPPHVF  119 (597)
T ss_dssp             GGCCCSEEEESSCEESEE---CTHHHHHCCCCSEEECTT-SCCCEECTTT----TTTC-TTCCEEECCSSCCCCCCTTTT
T ss_pred             cCCCceEEEeeCCCCCCc---CHHHHccCCCCcEEECCC-CCCCCCChHH----hcCC-CCCCEEECCCCcCCCCCHHHH
Confidence            467899999999887765   455678899999999999 5677776543    2333 899999999998777677778


Q ss_pred             CCCCCccEEEecCCCCccccCC--CCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCCCCCCCC
Q 002129          546 LSLSSLREIEIYGCRSLVSFPE--VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSL  623 (962)
Q Consensus       546 ~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L  623 (962)
                      ..+++|++|++++|. ++.+|.  +..+++|++|++++|. +..++...+ ..+++|++|++++| .++.++. ..+++|
T Consensus       120 ~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~-~~l~~L  194 (597)
T 3oja_B          120 QNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSN-RLTHVDL-SLIPSL  194 (597)
T ss_dssp             TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTCCEEECTTS-CCSBCCG-GGCTTC
T ss_pred             cCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhh-hcCCcCcEEECcCC-CCCCcCh-hhhhhh
Confidence            999999999999974 556664  4678999999999998 445544433 78899999999995 4555543 456789


Q ss_pred             ceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCc
Q 002129          624 KRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKL  703 (962)
Q Consensus       624 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~  703 (962)
                      +.|+++++. +..++.             .+.|+.|+++++.- .. ++             +..+++|+.|++++|.+.
T Consensus       195 ~~L~l~~n~-l~~l~~-------------~~~L~~L~ls~n~l-~~-~~-------------~~~~~~L~~L~L~~n~l~  245 (597)
T 3oja_B          195 FHANVSYNL-LSTLAI-------------PIAVEELDASHNSI-NV-VR-------------GPVNVELTILKLQHNNLT  245 (597)
T ss_dssp             SEEECCSSC-CSEEEC-------------CTTCSEEECCSSCC-CE-EE-------------CSCCSCCCEEECCSSCCC
T ss_pred             hhhhcccCc-cccccC-------------CchhheeeccCCcc-cc-cc-------------cccCCCCCEEECCCCCCC
Confidence            999998873 333321             24688888887642 22 11             112378999999999987


Q ss_pred             hhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccccC
Q 002129          704 ESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLH  783 (962)
Q Consensus       704 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  783 (962)
                      +.  ..+..+++|+.|++++|.+.+..|..+.++++|++|+|++| .+..+|.....+++|+.|++++|. +..+|..+.
T Consensus       246 ~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~  321 (597)
T 3oja_B          246 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQP  321 (597)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHH
T ss_pred             CC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCcccc
Confidence            63  67899999999999999999888999999999999999998 677788777778999999999998 557888889


Q ss_pred             CCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHH
Q 002129          784 NLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSM  826 (962)
Q Consensus       784 ~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~  826 (962)
                      .+++|++|++++|. +..++ ...+++|+.|++++|+......
T Consensus       322 ~l~~L~~L~L~~N~-l~~~~-~~~~~~L~~L~l~~N~~~~~~~  362 (597)
T 3oja_B          322 QFDRLENLYLDHNS-IVTLK-LSTHHTLKNLTLSHNDWDCNSL  362 (597)
T ss_dssp             HHTTCSEEECCSSC-CCCCC-CCTTCCCSEEECCSSCEEHHHH
T ss_pred             cCCCCCEEECCCCC-CCCcC-hhhcCCCCEEEeeCCCCCChhH
Confidence            99999999999995 55554 4567899999999999776544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.86  E-value=6.8e-22  Score=211.14  Aligned_cols=247  Identities=16%  Similarity=0.173  Sum_probs=133.0

Q ss_pred             CceeEEEEEecCCCcc-cccccccCCCceeEEeecc-ccCCCCCCCCcccccccccCCcccEEEecCCCCc-ccCccccC
Q 002129           34 RYLRHLSYIRGDYDGV-QRFGDLYDIQHLRTFLPVI-LSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRIL-ELPDSVGD  110 (962)
Q Consensus        34 ~~~r~lsl~~~~~~~~-~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~~~~  110 (962)
                      .+++++++.++.+... ..+..+.++++|++|.+.+ +.      +...+|+.+..+++|++|++++|.++ .+|..|+.
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  123 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN------LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ  123 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT------EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc------ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence            4566666666655431 1234556666666666653 22      12344444556666666666666666 55666666


Q ss_pred             CCcCcEEEcCCCccc-ccChhhhccCCccEEecCCCcchhccchhhhccC-CCcEEeccCCccccccccccccccccccc
Q 002129          111 LRYLRYLNLSGTEIR-TLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLV-KLHHLKNSNTKSLEEMPVGIGRLTCLQTL  188 (962)
Q Consensus       111 L~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~-~L~~L~l~~n~~~~~lp~~~~~L~~L~~L  188 (962)
                      +++|++|+|++|.++ .+|..++.+++|++|++++|...+.+|..++.+. +|++|++++|.+.+.+|..++.++ |++|
T Consensus       124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L  202 (313)
T 1ogq_A          124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV  202 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred             CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence            666666666666666 5566666666666666666544446666666666 666666666664445565566654 5555


Q ss_pred             ceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCC
Q 002129          189 CSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKP  268 (962)
Q Consensus       189 ~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~  268 (962)
                      ++..+.                              .....+..+..+++|+.|++++|....          ....+..
T Consensus       203 ~Ls~N~------------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~----------~~~~~~~  242 (313)
T 1ogq_A          203 DLSRNM------------------------------LEGDASVLFGSDKNTQKIHLAKNSLAF----------DLGKVGL  242 (313)
T ss_dssp             ECCSSE------------------------------EEECCGGGCCTTSCCSEEECCSSEECC----------BGGGCCC
T ss_pred             ECcCCc------------------------------ccCcCCHHHhcCCCCCEEECCCCceee----------ecCcccc
Confidence            432211                              111122334555666666665554211          1111333


Q ss_pred             CCCcceEEEeccCCC-CCCccccCCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCC
Q 002129          269 HTNLEQFCIKGYGGM-KFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMS  329 (962)
Q Consensus       269 ~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~  329 (962)
                      +++|++|++++|... .+|.++.  .+++|+.|++++|.+.+.+|..+.+++|+.|++++|+
T Consensus       243 l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          243 SKNLNGLDLRNNRIYGTLPQGLT--QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGG--GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             cCCCCEEECcCCcccCcCChHHh--cCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence            445555555555544 4444443  2455555555555544444444445555555554443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=5.6e-21  Score=205.21  Aligned_cols=186  Identities=22%  Similarity=0.313  Sum_probs=132.4

Q ss_pred             cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEec
Q 002129           87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKN  166 (962)
Q Consensus        87 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l  166 (962)
                      ...++++|+|++|.++.+|..++.+++|++|+|++|.++.+|..++++++|++|++++| .+..+|..++++++|++|++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence            45899999999999999999999999999999999999999999999999999999996 56689999999999999999


Q ss_pred             cCCcccccccccccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEe
Q 002129          167 SNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRW  246 (962)
Q Consensus       167 ~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  246 (962)
                      ++|...+.+|..++...-                                             ...+.++++|+.|++++
T Consensus       158 ~~n~~~~~~p~~~~~~~~---------------------------------------------~~~~~~l~~L~~L~L~~  192 (328)
T 4fcg_A          158 RACPELTELPEPLASTDA---------------------------------------------SGEHQGLVNLQSLRLEW  192 (328)
T ss_dssp             EEETTCCCCCSCSEEEC----------------------------------------------CCCEEESTTCCEEEEEE
T ss_pred             CCCCCccccChhHhhccc---------------------------------------------hhhhccCCCCCEEECcC
Confidence            998878888876544100                                             00133455666666666


Q ss_pred             ecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCC-CCCCCCCCCeEEE
Q 002129          247 TLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALP-SVGQLPSLKHLTV  325 (962)
Q Consensus       247 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L  325 (962)
                      |.....          ...+..+++|++|++++|....+|..+.  .+++|++|++++|.+.+.+| .++.+++|++|++
T Consensus       193 n~l~~l----------p~~l~~l~~L~~L~L~~N~l~~l~~~l~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  260 (328)
T 4fcg_A          193 TGIRSL----------PASIANLQNLKSLKIRNSPLSALGPAIH--HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL  260 (328)
T ss_dssp             ECCCCC----------CGGGGGCTTCCEEEEESSCCCCCCGGGG--GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred             CCcCcc----------hHhhcCCCCCCEEEccCCCCCcCchhhc--cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence            543211          1223445556666666666555555544  35666666666665555554 3555566666666


Q ss_pred             cCCCC
Q 002129          326 RGMSK  330 (962)
Q Consensus       326 ~~~~~  330 (962)
                      ++|..
T Consensus       261 ~~n~~  265 (328)
T 4fcg_A          261 KDCSN  265 (328)
T ss_dssp             TTCTT
T ss_pred             CCCCc
Confidence            55543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.85  E-value=2.9e-20  Score=200.93  Aligned_cols=294  Identities=17%  Similarity=0.155  Sum_probs=165.3

Q ss_pred             CcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccCCCC
Q 002129          469 KLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSL  548 (962)
Q Consensus       469 ~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l  548 (962)
                      +++.++++++.++.+..   .   -.++++.|++++ +.++.++...    +..+ ++|++|++++|......|..+..+
T Consensus        32 ~l~~l~~~~~~l~~lp~---~---~~~~l~~L~L~~-n~i~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~~~~l   99 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPK---D---LPPDTALLDLQN-NKITEIKDGD----FKNL-KNLHTLILINNKISKISPGAFAPL   99 (330)
T ss_dssp             ETTEEECTTSCCCSCCC---S---CCTTCCEEECCS-SCCCCBCTTT----TTTC-TTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             CCeEEEecCCCccccCc---c---CCCCCeEEECCC-CcCCEeChhh----hccC-CCCCEEECCCCcCCeeCHHHhcCC
Confidence            67778887776665422   1   135777788877 4566665532    2223 778888888877666667778888


Q ss_pred             CCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCC--cccC-CCCCCCCce
Q 002129          549 SSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLT--YIAG-VQLPPSLKR  625 (962)
Q Consensus       549 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~--~~~~-~~~~~~L~~  625 (962)
                      ++|++|++++|. ++.+|.. ..++|++|++++|. ++.++...+ ..+++|++|++++|..-.  ..+. ....++|+.
T Consensus       100 ~~L~~L~Ls~n~-l~~l~~~-~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~  175 (330)
T 1xku_A          100 VKLERLYLSKNQ-LKELPEK-MPKTLQELRVHENE-ITKVRKSVF-NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY  175 (330)
T ss_dssp             TTCCEEECCSSC-CSBCCSS-CCTTCCEEECCSSC-CCBBCHHHH-TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred             CCCCEEECCCCc-CCccChh-hcccccEEECCCCc-ccccCHhHh-cCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence            888888888864 4556543 23788888888887 445544443 677888888888754321  1111 022344444


Q ss_pred             EEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCchh
Q 002129          626 LKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLES  705 (962)
Q Consensus       626 L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~  705 (962)
                      |+++++. ++.++                                  .             .++++|++|++++|.+.+.
T Consensus       176 L~l~~n~-l~~l~----------------------------------~-------------~~~~~L~~L~l~~n~l~~~  207 (330)
T 1xku_A          176 IRIADTN-ITTIP----------------------------------Q-------------GLPPSLTELHLDGNKITKV  207 (330)
T ss_dssp             EECCSSC-CCSCC----------------------------------S-------------SCCTTCSEEECTTSCCCEE
T ss_pred             EECCCCc-cccCC----------------------------------c-------------cccccCCEEECCCCcCCcc
Confidence            4444432 11111                                  0             0114566666666665555


Q ss_pred             hhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCcc-ccCC
Q 002129          706 IAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPK-GLHN  784 (962)
Q Consensus       706 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~  784 (962)
                      .+..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+..+|..+..+++|++|++++|+. ..++. .+..
T Consensus       208 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~i-~~~~~~~f~~  285 (330)
T 1xku_A          208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNI-SAIGSNDFCP  285 (330)
T ss_dssp             CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCC-CCCCTTSSSC
T ss_pred             CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCcC-CccChhhcCC
Confidence            5556666666666666666655544445556666666666666 4445555555555555555555552 22221 1211


Q ss_pred             CcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccceeecccC
Q 002129          785 LKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNC  847 (962)
Q Consensus       785 l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  847 (962)
                      .                 ......+.++.+++++|+........  ..+..+++++.+++++|
T Consensus       286 ~-----------------~~~~~~~~l~~l~l~~N~~~~~~i~~--~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          286 P-----------------GYNTKKASYSGVSLFSNPVQYWEIQP--STFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             S-----------------SCCTTSCCCSEEECCSSSSCGGGSCG--GGGTTCCCGGGEEC---
T ss_pred             c-----------------ccccccccccceEeecCcccccccCc--cccccccceeEEEeccc
Confidence            0                 00011245666666666654322211  45777888888888775

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.85  E-value=1.4e-20  Score=203.51  Aligned_cols=294  Identities=15%  Similarity=0.111  Sum_probs=159.2

Q ss_pred             CcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccCCCC
Q 002129          469 KLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSL  548 (962)
Q Consensus       469 ~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l  548 (962)
                      +++.++++++.++.+..   ..   .++|+.|++++ +.++.++...    +..+ ++|++|++++|......|..+..+
T Consensus        34 ~l~~l~~~~~~l~~ip~---~~---~~~l~~L~l~~-n~i~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~~~~l  101 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPK---EI---SPDTTLLDLQN-NDISELRKDD----FKGL-QHLYALVLVNNKISKIHEKAFSPL  101 (332)
T ss_dssp             ETTEEECCSSCCSSCCS---CC---CTTCCEEECCS-SCCCEECTTT----TTTC-TTCCEEECCSSCCCEECGGGSTTC
T ss_pred             cCCEEECCCCCccccCC---CC---CCCCeEEECCC-CcCCccCHhH----hhCC-CCCcEEECCCCccCccCHhHhhCc
Confidence            57778887777665422   11   35777777777 4455554432    2222 777777777777655556677778


Q ss_pred             CCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCC--cccCC-CCCCCCce
Q 002129          549 SSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLT--YIAGV-QLPPSLKR  625 (962)
Q Consensus       549 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~--~~~~~-~~~~~L~~  625 (962)
                      ++|++|++++|. ++.+|.... ++|++|++++|. ++.++...+ ..+++|++|++++|..-.  ..+.. ... +|+.
T Consensus       102 ~~L~~L~L~~n~-l~~l~~~~~-~~L~~L~l~~n~-i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~  176 (332)
T 2ft3_A          102 RKLQKLYISKNH-LVEIPPNLP-SSLVELRIHDNR-IRKVPKGVF-SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY  176 (332)
T ss_dssp             TTCCEEECCSSC-CCSCCSSCC-TTCCEEECCSSC-CCCCCSGGG-SSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred             CCCCEEECCCCc-CCccCcccc-ccCCEEECCCCc-cCccCHhHh-CCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence            888888887753 445554322 778888888776 555555433 667778888777753211  11111 111 4444


Q ss_pred             EEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCchh
Q 002129          626 LKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLES  705 (962)
Q Consensus       626 L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~  705 (962)
                      |+++++. ++.++                                  .             .++++|++|++++|.+.+.
T Consensus       177 L~l~~n~-l~~l~----------------------------------~-------------~~~~~L~~L~l~~n~i~~~  208 (332)
T 2ft3_A          177 LRISEAK-LTGIP----------------------------------K-------------DLPETLNELHLDHNKIQAI  208 (332)
T ss_dssp             CBCCSSB-CSSCC----------------------------------S-------------SSCSSCSCCBCCSSCCCCC
T ss_pred             EECcCCC-CCccC----------------------------------c-------------cccCCCCEEECCCCcCCcc
Confidence            4444432 11111                                  0             0114566666666665555


Q ss_pred             hhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccccCCC
Q 002129          706 IAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNL  785 (962)
Q Consensus       706 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l  785 (962)
                      .+..+..+++|++|++++|.+.+..+..+..+++|++|++++| .++.+|..+..+++|+.|++++|+....-+..+...
T Consensus       209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  287 (332)
T 2ft3_A          209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV  287 (332)
T ss_dssp             CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred             CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCCCCccChhHcccc
Confidence            5555666666666666666555544445556666666666665 344555544444555555555554222111112110


Q ss_pred             cccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccceeecccC
Q 002129          786 KSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNC  847 (962)
Q Consensus       786 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  847 (962)
                                       ......+.|+.+++++|+........  ..+..+++|+.+++++|
T Consensus       288 -----------------~~~~~~~~l~~L~l~~N~~~~~~~~~--~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          288 -----------------GFGVKRAYYNGISLFNNPVPYWEVQP--ATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             -----------------SCCSSSCCBSEEECCSSSSCGGGSCG--GGGTTBCCSTTEEC---
T ss_pred             -----------------ccccccccccceEeecCcccccccCc--ccccccchhhhhhcccc
Confidence                             00011345666666666654222211  45777888888888775

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.85  E-value=3.4e-20  Score=200.34  Aligned_cols=180  Identities=12%  Similarity=0.057  Sum_probs=86.6

Q ss_pred             cCccEEEecCCCCch--hhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccc
Q 002129          690 PSLKLLLVWGCSKLE--SIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAML  767 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L  767 (962)
                      ++|+.|++++|....  ..+..+..+++|++|++++|.+. .+|..+.  ++|++|++++|......|..+..+++|+.|
T Consensus       145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  221 (330)
T 1xku_A          145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKL  221 (330)
T ss_dssp             TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred             ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            345555555554432  33344555555555555554432 2333222  455555555553222223333344455555


Q ss_pred             ccccccccccCccccCCCcccceeecCCCCCCCCCCCC-CCCCccceEeecCchhhhHHHHhcc--ccccccCccceeec
Q 002129          768 AIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED-GLPTNLHVLLINGNMEIWKSMIERG--RGFHRFSSLRQLTI  844 (962)
Q Consensus       768 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l  844 (962)
                      ++++|...+..+..+..+++|++|++++| .+..+|.. ..+++|++|++++|.+.........  ......+.|+.|++
T Consensus       222 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l  300 (330)
T 1xku_A          222 GLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL  300 (330)
T ss_dssp             ECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred             ECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEe
Confidence            55555533333334455555555555555 33344332 3345555555555554433221000  01123578999999


Q ss_pred             ccCCCCCccCCCCCCCCCCCccccCCCccceEeeccC
Q 002129          845 MNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGF  881 (962)
Q Consensus       845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  881 (962)
                      ++|......++.        ..+..+.+++.++++++
T Consensus       301 ~~N~~~~~~i~~--------~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          301 FSNPVQYWEIQP--------STFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CSSSSCGGGSCG--------GGGTTCCCGGGEEC---
T ss_pred             ecCcccccccCc--------cccccccceeEEEeccc
Confidence            997543333332        34567899999999885

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.84  E-value=2.4e-20  Score=200.18  Aligned_cols=219  Identities=21%  Similarity=0.348  Sum_probs=133.4

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCC-CCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPE-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEIL  603 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L  603 (962)
                      +.++.|++++|.. +.+|..+..+++|++|++++|... .+|. +..+++|++|++++|. +..+|..+  ..+++|++|
T Consensus        81 ~~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l--~~l~~L~~L  155 (328)
T 4fcg_A           81 PGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRALPASI--ASLNRLREL  155 (328)
T ss_dssp             TTCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCCCCGGG--GGCTTCCEE
T ss_pred             cceeEEEccCCCc-hhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cccCcHHH--hcCcCCCEE
Confidence            6788899988775 477888888999999999987544 6664 6678899999999987 55777665  678899999


Q ss_pred             EecCCCCCCcccCCCC----------CCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccC
Q 002129          604 EISGCDSLTYIAGVQL----------PPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSK  673 (962)
Q Consensus       604 ~l~~c~~l~~~~~~~~----------~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  673 (962)
                      ++++|+.++.+|....          +++|+.|++++|. ++.+                                    
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~l------------------------------------  198 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSL------------------------------------  198 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCC------------------------------------
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcc------------------------------------
Confidence            9998887776664211          2333333333321 1111                                    


Q ss_pred             CCccccccccccCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCccc
Q 002129          674 NELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVS  753 (962)
Q Consensus       674 ~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~  753 (962)
                         |..+..+      ++|++|++++|.+.+ +|..+..+++|++|++++|...+.+|..+.++++|++|++++|...+.
T Consensus       199 ---p~~l~~l------~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  268 (328)
T 4fcg_A          199 ---PASIANL------QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT  268 (328)
T ss_dssp             ---CGGGGGC------TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB
T ss_pred             ---hHhhcCC------CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh
Confidence               1111111      455555555555443 333455555555555555555555555555555555555555555555


Q ss_pred             CCCCCCCcccccccccccccccccCccccCCCcccceeecCC
Q 002129          754 SPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGK  795 (962)
Q Consensus       754 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~  795 (962)
                      +|..+..+++|+.|++++|+.++.+|..+.++++|+.+++..
T Consensus       269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            555555555555555555555555555555555555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.84  E-value=1.3e-19  Score=195.73  Aligned_cols=203  Identities=14%  Similarity=0.101  Sum_probs=108.6

Q ss_pred             cCccEEEecCCCCchhhhhhccCCCCcceEeecCCcccc--ccCccccCCCCccEEEcccCCCcccCCCCCCCccccccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQ--TLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAML  767 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L  767 (962)
                      ++|++|++++|.+.+..+..+..+++|++|++++|....  ..+..+..+ +|++|++++| .++.+|....  ++|++|
T Consensus       123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L  198 (332)
T 2ft3_A          123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNEL  198 (332)
T ss_dssp             TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCC
T ss_pred             ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEE
Confidence            355555666555554444556666666666666666532  344555555 6677777766 4555655443  467777


Q ss_pred             ccccccccccCccccCCCcccceeecCCCCCCCCCCC--CCCCCccceEeecCchhhhHHHHhccccccccCccceeecc
Q 002129          768 AIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEE--DGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIM  845 (962)
Q Consensus       768 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  845 (962)
                      ++++|...+..+..+..+++|++|++++| .+..++.  ...+++|++|++++|.+... +    ..+..+++|++|+++
T Consensus       199 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p----~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          199 HLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRV-P----AGLPDLKLLQVVYLH  272 (332)
T ss_dssp             BCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCCCBC-C----TTGGGCTTCCEEECC
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCcCeec-C----hhhhcCccCCEEECC
Confidence            77777654444456667777777777766 3433332  13345566666665554421 1    235667777777777


Q ss_pred             cCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCC--cccccccccCCCcCeEeccCCC
Q 002129          846 NCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNL--ERLTSSIVDLQNLTGLVLGNCP  906 (962)
Q Consensus       846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~l~~~~~~l~~L~~L~l~~c~  906 (962)
                      +|.  +..++.....  ........++|+.|++++++..  .-.|..+..+++|+.+++.+|.
T Consensus       273 ~N~--l~~~~~~~~~--~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          273 TNN--ITKVGVNDFC--PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSC--CCBCCTTSSS--CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCC--CCccChhHcc--ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            753  3333322110  0000112456777777775532  1223445666677777776653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.84  E-value=3.2e-21  Score=205.85  Aligned_cols=126  Identities=16%  Similarity=0.074  Sum_probs=62.3

Q ss_pred             CccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccc
Q 002129          691 SLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIY  770 (962)
Q Consensus       691 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~  770 (962)
                      +|++|++++|.+.+.+|..+..++ |++|++++|.+.+..|..+..+++|++|++++|.....+|. +..+++|++|+++
T Consensus       175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls  252 (313)
T 1ogq_A          175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLR  252 (313)
T ss_dssp             TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECC
T ss_pred             cCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECc
Confidence            555555555555555555555554 55555555555555555555555555555555532222222 3334455555555


Q ss_pred             cccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecC
Q 002129          771 NCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLING  818 (962)
Q Consensus       771 ~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~  818 (962)
                      +|...+.+|..+..+++|++|++++|.....+|..+.+++|+.+++++
T Consensus       253 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~  300 (313)
T 1ogq_A          253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN  300 (313)
T ss_dssp             SSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCS
T ss_pred             CCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcC
Confidence            555444555555555555555555553333343333333333333333

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.84  E-value=7.4e-22  Score=232.64  Aligned_cols=388  Identities=13%  Similarity=0.075  Sum_probs=221.3

Q ss_pred             CCCCcceEEecccccceeecccCCcccc-CCC-ccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccc---
Q 002129          466 QLPKLEELILSTKEQTYIWKSHDGLLQD-VCS-LKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVK---  540 (962)
Q Consensus       466 ~~~~L~~L~l~~n~~~~i~~~~~~~~~~-l~~-L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~---  540 (962)
                      .+++|++|++++|.+++..   ...+.. +++ |++|++++|..+..   .... .+..-+++|++|++++|.....   
T Consensus       110 ~~~~L~~L~L~~~~i~~~~---~~~l~~~~~~~L~~L~L~~~~~~~~---~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~  182 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLD---LDRLAKARADDLETLKLDKCSGFTT---DGLL-SIVTHCRKIKTLLMEESSFSEKDGK  182 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHH---HHHHHHHHGGGCCEEEEESCEEEEH---HHHH-HHHHHCTTCSEEECTTCEEECCCSH
T ss_pred             hCCCCCeEEeeccEecHHH---HHHHHHhccccCcEEECcCCCCcCH---HHHH-HHHhhCCCCCEEECccccccCcchh
Confidence            4677888888877654321   111222 334 88888888764322   1111 1122237788888888764332   


Q ss_pred             -cCccCCCCCCccEEEecCCCCc----cccCC-CCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcc
Q 002129          541 -LPQSSLSLSSLREIEIYGCRSL----VSFPE-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYI  614 (962)
Q Consensus       541 -~~~~~~~l~~L~~L~l~~~~~l----~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  614 (962)
                       ++.....+++|++|++++|..-    ..++. ...+++|++|++++|. +..++..+  ..+++|++|+++++......
T Consensus       183 ~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~--~~~~~L~~L~l~~~~~~~~~  259 (592)
T 3ogk_B          183 WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFF--KAAANLEEFCGGSLNEDIGM  259 (592)
T ss_dssp             HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHH--HHCTTCCEEEECBCCCCTTC
T ss_pred             HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHH--hhhhHHHhhcccccccccch
Confidence             2233445777888888775432    12221 2346778888887776 44455433  56677787777753322111


Q ss_pred             ----cCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCcc
Q 002129          615 ----AGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPP  690 (962)
Q Consensus       615 ----~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~  690 (962)
                          .....+++|+.+.+.++.                                        ...++..+..+      +
T Consensus       260 ~~~~~~l~~~~~L~~L~l~~~~----------------------------------------~~~l~~~~~~~------~  293 (592)
T 3ogk_B          260 PEKYMNLVFPRKLCRLGLSYMG----------------------------------------PNEMPILFPFA------A  293 (592)
T ss_dssp             TTSSSCCCCCTTCCEEEETTCC----------------------------------------TTTGGGGGGGG------G
T ss_pred             HHHHHHhhccccccccCccccc----------------------------------------hhHHHHHHhhc------C
Confidence                111233455555544421                                        11112222222      6


Q ss_pred             CccEEEecCCCCchhh-hhhccCCCCcceEeecCCccccccCccccCCCCccEEEccc----------CCCcccC--CCC
Q 002129          691 SLKLLLVWGCSKLESI-AEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIAS----------CGNLVSS--PEG  757 (962)
Q Consensus       691 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~----------~~~l~~~--~~~  757 (962)
                      +|++|++++|...+.. +..+..+++|++|+++++-....++.....+++|++|++++          |..++..  +..
T Consensus       294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l  373 (592)
T 3ogk_B          294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL  373 (592)
T ss_dssp             GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred             CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence            8888888888854443 34577888888888884333333444446678888888884          5444421  111


Q ss_pred             CCCcccccccccccccccccCccccCC-CcccceeecCC---CCCCCCCCCC-------CCCCccceEeecCch--hhhH
Q 002129          758 GLPCAKLAMLAIYNCKRLEALPKGLHN-LKSLQELRIGK---GVALPSLEED-------GLPTNLHVLLINGNM--EIWK  824 (962)
Q Consensus       758 ~~~~~~L~~L~l~~c~~l~~~~~~~~~-l~~L~~L~l~~---~~~l~~~~~~-------~~~~~L~~L~l~~~~--~~~~  824 (962)
                      ...+++|++|+++.+......+..+.. +++|++|++++   |+.++..|..       ..+++|++|+++.|.  ....
T Consensus       374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~  453 (592)
T 3ogk_B          374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL  453 (592)
T ss_dssp             HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred             HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence            122568888888655544444444443 78888888874   4456554321       236889999997655  2222


Q ss_pred             HHHhccccccccCccceeecccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcc--cccccccCCCcCeEec
Q 002129          825 SMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLER--LTSSIVDLQNLTGLVL  902 (962)
Q Consensus       825 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~L~~L~l  902 (962)
                      ...   .....+++|++|++++|......++.         ....+++|++|++++|+ ++.  ++..+..+++|++|++
T Consensus       454 ~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~---------~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l  520 (592)
T 3ogk_B          454 GLS---YIGQYSPNVRWMLLGYVGESDEGLME---------FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWV  520 (592)
T ss_dssp             HHH---HHHHSCTTCCEEEECSCCSSHHHHHH---------HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEE
T ss_pred             HHH---HHHHhCccceEeeccCCCCCHHHHHH---------HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeEC
Confidence            221   22345788999999987532222221         12356889999999987 543  4444567899999999


Q ss_pred             cCCCCCccCCCCCCcccccee
Q 002129          903 GNCPKLKYFPEKGLPSSLLQL  923 (962)
Q Consensus       903 ~~c~~l~~l~~~~~~~sL~~L  923 (962)
                      ++|+ ++...-..++.++..+
T Consensus       521 s~n~-it~~~~~~l~~~~p~l  540 (592)
T 3ogk_B          521 QGYR-ASMTGQDLMQMARPYW  540 (592)
T ss_dssp             ESCB-CCTTCTTGGGGCCTTE
T ss_pred             cCCc-CCHHHHHHHHHhCCCc
Confidence            9987 5544332334333333

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.83  E-value=9.3e-22  Score=231.80  Aligned_cols=326  Identities=15%  Similarity=0.116  Sum_probs=158.6

Q ss_pred             CCCcceEEecccccceeecc-cCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccC
Q 002129          467 LPKLEELILSTKEQTYIWKS-HDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSS  545 (962)
Q Consensus       467 ~~~L~~L~l~~n~~~~i~~~-~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~  545 (962)
                      +++|++|++++|.+++.... .......+++|++|++++ +.+..+........+..+ ++|+.|++++|... .++..+
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~-n~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~-~l~~~~  239 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYM-TEFAKISPKDLETIARNC-RSLVSVKVGDFEIL-ELVGFF  239 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTT-CCCSSCCHHHHHHHHHHC-TTCCEEECSSCBGG-GGHHHH
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeec-cCCCccCHHHHHHHHhhC-CCCcEEeccCccHH-HHHHHH
Confidence            45666666666554332110 011234566677777765 333322222222222233 77777777776543 355566


Q ss_pred             CCCCCccEEEecCCCCccc----cCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccC---CC
Q 002129          546 LSLSSLREIEIYGCRSLVS----FPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAG---VQ  618 (962)
Q Consensus       546 ~~l~~L~~L~l~~~~~l~~----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~---~~  618 (962)
                      ..+++|++|+++.+.....    ......+++|+.++++++. ...++..+  ..+++|++|++++|. ++....   ..
T Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~--~~~~~L~~L~Ls~~~-l~~~~~~~~~~  315 (592)
T 3ogk_B          240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILF--PFAAQIRKLDLLYAL-LETEDHCTLIQ  315 (592)
T ss_dssp             HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGG--GGGGGCCEEEETTCC-CCHHHHHHHHT
T ss_pred             hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHH--hhcCCCcEEecCCCc-CCHHHHHHHHH
Confidence            6777788877775332211    1234556777777777753 34444433  566778888888776 332111   13


Q ss_pred             CCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEec
Q 002129          619 LPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVW  698 (962)
Q Consensus       619 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~  698 (962)
                      .+++|+.|++.++..-..++                                       .....+      ++|++|+++
T Consensus       316 ~~~~L~~L~L~~~~~~~~l~---------------------------------------~~~~~~------~~L~~L~L~  350 (592)
T 3ogk_B          316 KCPNLEVLETRNVIGDRGLE---------------------------------------VLAQYC------KQLKRLRIE  350 (592)
T ss_dssp             TCTTCCEEEEEGGGHHHHHH---------------------------------------HHHHHC------TTCCEEEEE
T ss_pred             hCcCCCEEeccCccCHHHHH---------------------------------------HHHHhC------CCCCEEEee
Confidence            45666666665321000000                                       000000      445555555


Q ss_pred             C----------CCCchh--hhhhccCCCCcceEeecCCccccccCccccC-CCCccEEEccc---CCCcccCCCC-----
Q 002129          699 G----------CSKLES--IAEMLDNNTSLEKINISGCGNLQTLPSGLHN-LCQLQEISIAS---CGNLVSSPEG-----  757 (962)
Q Consensus       699 ~----------~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~L~~---~~~l~~~~~~-----  757 (962)
                      +          |...+.  ++..+..+++|++|+++.+.+....+..+.. +++|++|++++   |+.++..|..     
T Consensus       351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~  430 (592)
T 3ogk_B          351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS  430 (592)
T ss_dssp             CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred             cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence            3          322221  2233445666666666544444433333333 56666666653   3344433221     


Q ss_pred             -CCCcccccccccccccc--cccCcccc-CCCcccceeecCCCCCCCC--CCC-CCCCCccceEeecCchhhhHHHHhcc
Q 002129          758 -GLPCAKLAMLAIYNCKR--LEALPKGL-HNLKSLQELRIGKGVALPS--LEE-DGLPTNLHVLLINGNMEIWKSMIERG  830 (962)
Q Consensus       758 -~~~~~~L~~L~l~~c~~--l~~~~~~~-~~l~~L~~L~l~~~~~l~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~  830 (962)
                       ...+++|+.|++++|..  ....+..+ ..+++|++|++++|. +..  ++. ...+++|++|++++|++......   
T Consensus       431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---  506 (592)
T 3ogk_B          431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA---  506 (592)
T ss_dssp             HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH---
T ss_pred             HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHH---
Confidence             12245566666655442  11111122 235666666666663 221  111 13346666666666664332222   


Q ss_pred             ccccccCccceeecccCC
Q 002129          831 RGFHRFSSLRQLTIMNCD  848 (962)
Q Consensus       831 ~~~~~l~~L~~L~l~~~~  848 (962)
                      ..+..+++|++|++++|.
T Consensus       507 ~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          507 AAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHHHHCSSCCEEEEESCB
T ss_pred             HHHHhcCccCeeECcCCc
Confidence            233456777777777763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.81  E-value=4.2e-19  Score=193.71  Aligned_cols=99  Identities=18%  Similarity=0.213  Sum_probs=67.6

Q ss_pred             cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhccchhhhccCCCcEEe
Q 002129           87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLK  165 (962)
Q Consensus        87 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~  165 (962)
                      .++...+.+++++.++.+|..+.  .+|++|++++|.++.+|. .++++++|++|++++|...+..|..++++++|++|+
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            44555567778888888887665  378888888888887765 578888888888888543333355678888888888


Q ss_pred             ccCCccccccccc-cccccccccc
Q 002129          166 NSNTKSLEEMPVG-IGRLTCLQTL  188 (962)
Q Consensus       166 l~~n~~~~~lp~~-~~~L~~L~~L  188 (962)
                      +++|. +..+|.. ++++++|++|
T Consensus       107 Ls~n~-l~~~~~~~~~~l~~L~~L  129 (353)
T 2z80_A          107 LSYNY-LSNLSSSWFKPLSSLTFL  129 (353)
T ss_dssp             CCSSC-CSSCCHHHHTTCTTCSEE
T ss_pred             CCCCc-CCcCCHhHhCCCccCCEE
Confidence            88887 5555543 4444444433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.80  E-value=1.3e-18  Score=200.81  Aligned_cols=80  Identities=19%  Similarity=0.218  Sum_probs=62.4

Q ss_pred             CCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEecc
Q 002129           88 LQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNS  167 (962)
Q Consensus        88 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~  167 (962)
                      ..++++|++++|.++.+|..+.  ++|++|+|++|.|+.+|.   .+++|++|++++| .+..+|.   .+++|++|+++
T Consensus        39 ~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           39 NNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIF  109 (622)
T ss_dssp             HHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEEC
T ss_pred             CCCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECc
Confidence            3458888888888888887776  788888888888888877   5778888888885 4667776   67888888888


Q ss_pred             CCcccccccc
Q 002129          168 NTKSLEEMPV  177 (962)
Q Consensus       168 ~n~~~~~lp~  177 (962)
                      +|. +..+|.
T Consensus       110 ~N~-l~~l~~  118 (622)
T 3g06_A          110 SNP-LTHLPA  118 (622)
T ss_dssp             SCC-CCCCCC
T ss_pred             CCc-CCCCCC
Confidence            887 555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.79  E-value=6.3e-22  Score=225.43  Aligned_cols=281  Identities=21%  Similarity=0.208  Sum_probs=156.3

Q ss_pred             CcceEEecccccceee-cccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccc----cCc
Q 002129          469 KLEELILSTKEQTYIW-KSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVK----LPQ  543 (962)
Q Consensus       469 ~L~~L~l~~n~~~~i~-~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~----~~~  543 (962)
                      +|++|++++|.++... ......+..+++|++|++++|. +...........+....++|++|++++|.....    ++.
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  164 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS  164 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence            6777777777765432 1112345667788888888743 443322211111111113588888888765442    344


Q ss_pred             cCCCCCCccEEEecCCCCccccC--CC-----CCCCCCcEEEEcCCCCCCCC-----hhhhhcCCCCCccEEEecCCCCC
Q 002129          544 SSLSLSSLREIEIYGCRSLVSFP--EV-----ALPSKLKKIEISSCDALKSL-----PEAWMCDTNSSLEILEISGCDSL  611 (962)
Q Consensus       544 ~~~~l~~L~~L~l~~~~~l~~~~--~~-----~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~l~~L~~L~l~~c~~l  611 (962)
                      .+..+++|++|++++|. ++...  .+     ...++|++|++++|. ++..     +..+  ..+++|++|++++|. +
T Consensus       165 ~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~-l  239 (461)
T 1z7x_W          165 VLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIV--ASKASLRELALGSNK-L  239 (461)
T ss_dssp             HHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHH--HHCTTCCEEECCSSB-C
T ss_pred             HHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHH--HhCCCccEEeccCCc-C
Confidence            55567788888888865 33211  11     124578888888886 4442     2222  456788888888763 3


Q ss_pred             Cccc-----CC--CCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccc
Q 002129          612 TYIA-----GV--QLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE  684 (962)
Q Consensus       612 ~~~~-----~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~  684 (962)
                      +...     ..  ...++|+.|++++| .++....                                  ..++..+..+ 
T Consensus       240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~----------------------------------~~l~~~l~~~-  283 (461)
T 1z7x_W          240 GDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGC----------------------------------GDLCRVLRAK-  283 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHH----------------------------------HHHHHHHHHC-
T ss_pred             ChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHH----------------------------------HHHHHHHhhC-
Confidence            3211     10  12356666666665 2222100                                  0011111111 


Q ss_pred             cCCCccCccEEEecCCCCchhhhhhcc-----CCCCcceEeecCCccccc----cCccccCCCCccEEEcccCCCcccC-
Q 002129          685 VGNLPPSLKLLLVWGCSKLESIAEMLD-----NNTSLEKINISGCGNLQT----LPSGLHNLCQLQEISIASCGNLVSS-  754 (962)
Q Consensus       685 ~~~l~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~l~~~-  754 (962)
                           ++|++|++++|.+.+..+..+.     ..++|++|++++|.+...    ++..+..+++|++|++++|. ++.. 
T Consensus       284 -----~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~  357 (461)
T 1z7x_W          284 -----ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAG  357 (461)
T ss_dssp             -----TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHH
T ss_pred             -----CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-ccccc
Confidence                 5777788887776554332222     336788888887776544    44555667788888888773 3321 


Q ss_pred             CCCC-----CCcccccccccccccccc----cCccccCCCcccceeecCCCC
Q 002129          755 PEGG-----LPCAKLAMLAIYNCKRLE----ALPKGLHNLKSLQELRIGKGV  797 (962)
Q Consensus       755 ~~~~-----~~~~~L~~L~l~~c~~l~----~~~~~~~~l~~L~~L~l~~~~  797 (962)
                      +...     .+.++|++|++++|....    .+|..+..+++|++|++++|+
T Consensus       358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            1110     114577788888776443    566667777788888888774

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.79  E-value=1e-18  Score=190.58  Aligned_cols=249  Identities=15%  Similarity=0.147  Sum_probs=169.9

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccC--CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFP--EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEI  602 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~  602 (962)
                      ++|++|++++|......+..+..+++|++|++++|. ++.++  .+..+++|++|++++|. ++.++...+ ..+++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWF-KPLSSLTF  128 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHH-TTCTTCSE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHh-CCCccCCE
Confidence            567777777776544444467888888888888864 44443  36667888888888887 566666544 77888999


Q ss_pred             EEecCCCCCCcccC---CCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCcccc
Q 002129          603 LEISGCDSLTYIAG---VQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPAT  679 (962)
Q Consensus       603 L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~  679 (962)
                      |++++| .++.++.   ....++|+.|++++|..++.++..                                      .
T Consensus       129 L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--------------------------------------~  169 (353)
T 2z80_A          129 LNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK--------------------------------------D  169 (353)
T ss_dssp             EECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT--------------------------------------T
T ss_pred             EECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHH--------------------------------------H
Confidence            999885 4555554   244567777777776544443310                                      0


Q ss_pred             ccccccCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCC
Q 002129          680 LESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGL  759 (962)
Q Consensus       680 l~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~  759 (962)
                      +     +.+ ++|++|++++|...+..|..+..+++|++|++++|......+..+..+++|++|++++| .++.++....
T Consensus       170 ~-----~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l  242 (353)
T 2z80_A          170 F-----AGL-TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT-DLDTFHFSEL  242 (353)
T ss_dssp             T-----TTC-CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC-BCTTCCCC--
T ss_pred             c-----cCC-CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC-cccccccccc
Confidence            1     111 68899999999888888888999999999999988764333233456889999999988 4444432211


Q ss_pred             ----Ccccccccccccccc----cccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhhh
Q 002129          760 ----PCAKLAMLAIYNCKR----LEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEIW  823 (962)
Q Consensus       760 ----~~~~L~~L~l~~c~~----l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~  823 (962)
                          ..+.++.++++++..    +..+|..+..+++|++|++++| .++.+|..  ..+++|++|++++|+...
T Consensus       243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence                133455555555543    2356778889999999999998 56677763  456778888888876543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.79  E-value=2.1e-21  Score=221.07  Aligned_cols=236  Identities=18%  Similarity=0.171  Sum_probs=124.9

Q ss_pred             CCCcceEEecccccceeecc-cCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccc----c
Q 002129          467 LPKLEELILSTKEQTYIWKS-HDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVK----L  541 (962)
Q Consensus       467 ~~~L~~L~l~~n~~~~i~~~-~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~----~  541 (962)
                      .++|++|++++|.++..... ....+..+++|++|++++|. +...........+....++|++|++++|.....    +
T Consensus       141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  219 (461)
T 1z7x_W          141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL  219 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred             CCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence            45678888887766643211 12234556788888888743 544333222222211124788888888765442    4


Q ss_pred             CccCCCCCCccEEEecCCCCcccc------CC-CCCCCCCcEEEEcCCCCCCC-----ChhhhhcCCCCCccEEEecCCC
Q 002129          542 PQSSLSLSSLREIEIYGCRSLVSF------PE-VALPSKLKKIEISSCDALKS-----LPEAWMCDTNSSLEILEISGCD  609 (962)
Q Consensus       542 ~~~~~~l~~L~~L~l~~~~~l~~~------~~-~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~l~~L~~L~l~~c~  609 (962)
                      +..+..+++|++|++++|. ++..      +. ...+++|++|++++|. ++.     ++..+  ..+++|++|++++|.
T Consensus       220 ~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          220 CGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVL--RAKESLKELSLAGNE  295 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHH--HHCTTCCEEECTTCC
T ss_pred             HHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHH--hhCCCcceEECCCCC
Confidence            5556667888888888864 3321      11 1236778888888875 444     23322  446777777777753


Q ss_pred             CCCcc-----cCC--CCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccc
Q 002129          610 SLTYI-----AGV--QLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLES  682 (962)
Q Consensus       610 ~l~~~-----~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~  682 (962)
                       ++..     ...  ...++|+.|++++|. ++...                                  ...++..+..
T Consensus       296 -i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~----------------------------------~~~l~~~l~~  339 (461)
T 1z7x_W          296 -LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAAC----------------------------------CSHFSSVLAQ  339 (461)
T ss_dssp             -CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGG----------------------------------HHHHHHHHHH
T ss_pred             -CchHHHHHHHHHhccCCccceeeEcCCCC-CchHH----------------------------------HHHHHHHHhh
Confidence             2211     100  112355555555543 11100                                  0001111111


Q ss_pred             cccCCCccCccEEEecCCCCchhhhhhcc----C-CCCcceEeecCCcccc----ccCccccCCCCccEEEcccCC
Q 002129          683 LEVGNLPPSLKLLLVWGCSKLESIAEMLD----N-NTSLEKINISGCGNLQ----TLPSGLHNLCQLQEISIASCG  749 (962)
Q Consensus       683 l~~~~l~~~L~~L~l~~~~~~~~~~~~~~----~-l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~L~~~~  749 (962)
                      .      ++|++|++++|.+.+..+..+.    . .++|++|++++|.+..    .+|..+..+++|++|++++|+
T Consensus       340 ~------~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          340 N------RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             C------SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             C------CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            1      5666666666665544333222    1 5566666776666553    455556666666666666663

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.78  E-value=1.9e-17  Score=191.17  Aligned_cols=214  Identities=29%  Similarity=0.344  Sum_probs=127.8

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE  604 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  604 (962)
                      .+++.|++++|.. +.+|..+.  ++|++|++++| .++.+|.  .+++|++|++++|. ++.+|.     .+++|++|+
T Consensus        40 ~~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSCC-SCCCSCCC--TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEE
T ss_pred             CCCcEEEecCCCc-CccChhhC--CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEE
Confidence            5689999998764 47776554  78999999986 4667776  67889999999987 666764     568899999


Q ss_pred             ecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccc
Q 002129          605 ISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE  684 (962)
Q Consensus       605 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~  684 (962)
                      +++| .++.++.  .+++|+.|++++|. ++.++..                                            
T Consensus       108 Ls~N-~l~~l~~--~l~~L~~L~L~~N~-l~~lp~~--------------------------------------------  139 (622)
T 3g06_A          108 IFSN-PLTHLPA--LPSGLCKLWIFGNQ-LTSLPVL--------------------------------------------  139 (622)
T ss_dssp             ECSC-CCCCCCC--CCTTCCEEECCSSC-CSCCCCC--------------------------------------------
T ss_pred             CcCC-cCCCCCC--CCCCcCEEECCCCC-CCcCCCC--------------------------------------------
Confidence            9885 5555654  55677777777663 3333310                                            


Q ss_pred             cCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccc
Q 002129          685 VGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKL  764 (962)
Q Consensus       685 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L  764 (962)
                          +++|++|++++|.+.+ +|.   .+++|+.|++++|.+.+ +|   ..+++|+.|++++| .++.+|..   .++|
T Consensus       140 ----l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N-~l~~l~~~---~~~L  203 (622)
T 3g06_A          140 ----PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDN-QLASLPTL---PSEL  203 (622)
T ss_dssp             ----CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS-CCSCCCCC---CTTC
T ss_pred             ----CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCC-CCCCCCCc---cchh
Confidence                0456666666654433 221   23455666666554333 33   33455666666665 34444432   2356


Q ss_pred             cccccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchh
Q 002129          765 AMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNME  821 (962)
Q Consensus       765 ~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~  821 (962)
                      +.|++++|. +..+|.   .+++|++|++++| .++.+|  ..+++|+.|++++|.+
T Consensus       204 ~~L~L~~N~-l~~l~~---~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~L  253 (622)
T 3g06_A          204 YKLWAYNNR-LTSLPA---LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNRL  253 (622)
T ss_dssp             CEEECCSSC-CSSCCC---CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSCC
T ss_pred             hEEECcCCc-ccccCC---CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCCC
Confidence            666666554 334443   2355666666655 444444  2334555555555543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.78  E-value=5e-21  Score=225.79  Aligned_cols=84  Identities=13%  Similarity=0.153  Sum_probs=45.4

Q ss_pred             cCccEEEecCCCCchhhhhhccC-CCCcceEeecCCccccccCccc-cCCCCccEEEcccCCCcccCCC-CCCCcccccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLDN-NTSLEKINISGCGNLQTLPSGL-HNLCQLQEISIASCGNLVSSPE-GGLPCAKLAM  766 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~l~~~~~-~~~~~~~L~~  766 (962)
                      ++|++|++++ ...+..+..+.. +++|+.|++++|......+..+ .++++|++|+|++|+....... ....+++|+.
T Consensus       432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  510 (594)
T 2p1m_B          432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS  510 (594)
T ss_dssp             TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSE
T ss_pred             CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCE
Confidence            5677777765 334433333333 6777777777776544332222 4567777777777754111111 1222556666


Q ss_pred             cccccccc
Q 002129          767 LAIYNCKR  774 (962)
Q Consensus       767 L~l~~c~~  774 (962)
                      |++++|+.
T Consensus       511 L~l~~~~~  518 (594)
T 2p1m_B          511 LWMSSCSV  518 (594)
T ss_dssp             EEEESSCC
T ss_pred             EeeeCCCC
Confidence            66666664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.77  E-value=1.9e-18  Score=184.42  Aligned_cols=134  Identities=19%  Similarity=0.176  Sum_probs=92.4

Q ss_pred             cCccEEEecCCCCchhhhhhccCCCCcceEeecCCcccc-ccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQ-TLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLA  768 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~  768 (962)
                      ++|++|++++|...+..+..+..+++|++|++++|...+ .+|..+..+++|++|++++|......|..+..+++|+.|+
T Consensus       126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  205 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  205 (306)
T ss_dssp             TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence            577777777777777777777778888888888877665 4677777788888888888744333455566677888888


Q ss_pred             cccccccccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhhh
Q 002129          769 IYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEIW  823 (962)
Q Consensus       769 l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~  823 (962)
                      +++|...+..+..+..+++|++|++++|......+..  ..+++|++|++++|++..
T Consensus       206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            8888754444446777888888888887543333322  223577778887777643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.77  E-value=7.9e-18  Score=190.17  Aligned_cols=106  Identities=19%  Similarity=0.156  Sum_probs=50.2

Q ss_pred             cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAI  769 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l  769 (962)
                      ++|++|++++|.+.+. | .+..+++|++|++++|.+.+..|..+.++++|++|++++|......+..+..+++|+.|++
T Consensus       196 ~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  273 (452)
T 3zyi_A          196 FNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL  273 (452)
T ss_dssp             TTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEEC
Confidence            3455555555543332 1 2445555555555555544444455555555555555555322222333334455555555


Q ss_pred             ccccccccCccccCCCcccceeecCCCC
Q 002129          770 YNCKRLEALPKGLHNLKSLQELRIGKGV  797 (962)
Q Consensus       770 ~~c~~l~~~~~~~~~l~~L~~L~l~~~~  797 (962)
                      ++|......+..+..+++|+.|++++|+
T Consensus       274 ~~N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          274 AHNNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CCCcCCccChHHhccccCCCEEEccCCC
Confidence            5554332222334555555555555553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.77  E-value=1.2e-20  Score=222.54  Aligned_cols=84  Identities=14%  Similarity=0.277  Sum_probs=40.6

Q ss_pred             CCCcceeeccCcccccccccCCC----------CcccccCCCccEEEeccCCcccccCC----CCCCCccEEEEcCcccc
Q 002129          347 FPRLETLRFEDLQEWEDSIPHGS----------SQGVERFPKLRELRILRCSKLKGTFP----EHLPALEMLVIEGCEEL  412 (962)
Q Consensus       347 ~~~L~~L~l~~~~~l~~~~~~~~----------~~~~~~~~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~~~~l  412 (962)
                      |++|++|.+.+++..........          ..-...+++|++|++++| .+++..+    ..+++|++|++.+|..+
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            78888888887765432211000          000134667777777776 3432211    23455666666555322


Q ss_pred             cc-----cCCCCCcceEEEEccCC
Q 002129          413 LV-----SVSSLPALCKFIISGCK  431 (962)
Q Consensus       413 ~~-----~~~~l~~L~~L~l~~~~  431 (962)
                      ..     ....+++|++|++++|.
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCc
Confidence            11     12234455555555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.77  E-value=1.4e-18  Score=185.58  Aligned_cols=123  Identities=20%  Similarity=0.138  Sum_probs=66.0

Q ss_pred             CceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCccc---CccccCCCcCcEEEcCCCcccccChhhhcc
Q 002129           59 QHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILEL---PDSVGDLRYLRYLNLSGTEIRTLPESVSKL  134 (962)
Q Consensus        59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~l---p~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L  134 (962)
                      ++|++|.+.++.       ...+++.++ ++++|++|++++|.++.+   |..+..+++|++|+|++|.++.+|..+..+
T Consensus        28 ~~l~~L~L~~n~-------l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l  100 (306)
T 2z66_A           28 SSATRLELESNK-------LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL  100 (306)
T ss_dssp             TTCCEEECCSSC-------CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred             CCCCEEECCCCc-------cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCC
Confidence            355555554432       234455544 566666666666665533   344555666666666666666665556666


Q ss_pred             CCccEEecCCCcchhccc--hhhhccCCCcEEeccCCcccccccccccccccccccc
Q 002129          135 YNLHSLLLEDCDRLEKLC--ADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLC  189 (962)
Q Consensus       135 ~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~  189 (962)
                      ++|++|++++| .+..+|  ..+..+++|++|++++|.+....|..++.+++|++|+
T Consensus       101 ~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  156 (306)
T 2z66_A          101 EQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK  156 (306)
T ss_dssp             TTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence            66666666653 333333  2455666666666666652223333355555555553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.77  E-value=8.5e-18  Score=189.17  Aligned_cols=200  Identities=17%  Similarity=0.159  Sum_probs=119.6

Q ss_pred             cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCC-CCCCcccccccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPE-GGLPCAKLAMLA  768 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~-~~~~~~~L~~L~  768 (962)
                      ++|++|++++|.+.+..+..|.++++|++|++++|.+....+..+..+++|++|++++|. +..++. .+..+++|+.|+
T Consensus        88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~  166 (440)
T 3zyj_A           88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLD  166 (440)
T ss_dssp             SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeC
Confidence            466666666666655555666666666666666665554444456666666666666663 444433 344466666666


Q ss_pred             cccccccccCcc-ccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccceeecccC
Q 002129          769 IYNCKRLEALPK-GLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNC  847 (962)
Q Consensus       769 l~~c~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  847 (962)
                      +++|..+..++. .+.++++|++|++++| .++.+|....+++|++|++++|.+....+    ..+..+++|++|++++|
T Consensus       167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          167 LGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSAIRP----GSFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             CCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTC
T ss_pred             CCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCCccCccCh----hhhccCccCCEEECCCC
Confidence            666655555544 4566666777777666 55556655556667777777666554333    45666777777777765


Q ss_pred             CCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcccccc-cccCCCcCeEeccCCC
Q 002129          848 DDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSS-IVDLQNLTGLVLGNCP  906 (962)
Q Consensus       848 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~  906 (962)
                      .  +..++.        .++..+++|++|+|++ +.++.+|.. +..+++|++|++.+++
T Consensus       242 ~--l~~~~~--------~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          242 Q--IQVIER--------NAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             C--CCEECT--------TSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             c--eeEECh--------hhhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence            2  222222        1234566777777776 456666543 3556677777776643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.77  E-value=1.5e-18  Score=183.11  Aligned_cols=204  Identities=14%  Similarity=0.104  Sum_probs=112.8

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCcccc-C-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSF-P-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEI  602 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~-~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~  602 (962)
                      ++|++|++++|......+..+..+++|++|++++|. ++.+ + .+..+++|++|++++|..++.++...+ ..+++|++
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~-~~l~~L~~  109 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF-HGLGRLHT  109 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT-TTCTTCCE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHh-cCCcCCCE
Confidence            556666666655544444456666777777777653 3333 2 244456666666666654555533322 45566666


Q ss_pred             EEecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccc
Q 002129          603 LEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLES  682 (962)
Q Consensus       603 L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~  682 (962)
                      |++++|. ++.++...                                                             +  
T Consensus       110 L~l~~n~-l~~~~~~~-------------------------------------------------------------~--  125 (285)
T 1ozn_A          110 LHLDRCG-LQELGPGL-------------------------------------------------------------F--  125 (285)
T ss_dssp             EECTTSC-CCCCCTTT-------------------------------------------------------------T--
T ss_pred             EECCCCc-CCEECHhH-------------------------------------------------------------h--
Confidence            6666532 11111100                                                             0  


Q ss_pred             cccCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcc
Q 002129          683 LEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCA  762 (962)
Q Consensus       683 l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~  762 (962)
                         ..+ ++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+.++++|++|++++|......|..+..++
T Consensus       126 ---~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  201 (285)
T 1ozn_A          126 ---RGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG  201 (285)
T ss_dssp             ---TTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             ---hCC-cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcc
Confidence               000 4566666666665555555566666666666666655544444566666667777766644333455555566


Q ss_pred             cccccccccccccccCccccCCCcccceeecCCCCC
Q 002129          763 KLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVA  798 (962)
Q Consensus       763 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~  798 (962)
                      +|+.|++++|...+..+..+..+++|++|++++|+.
T Consensus       202 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            666666666664433334466667777777776643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=2.7e-19  Score=191.65  Aligned_cols=237  Identities=11%  Similarity=0.040  Sum_probs=159.6

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE  604 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  604 (962)
                      ++|++|++++|......|..+..+++|++|++++|.... ++++..+++|++|++++|. ++.++      ..++|++|+
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~l~~L~~L~Ls~n~-l~~l~------~~~~L~~L~  105 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLDLESLSTLRTLDLNNNY-VQELL------VGPSIETLH  105 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEEETTCTTCCEEECCSSE-EEEEE------ECTTCCEEE
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chhhhhcCCCCEEECcCCc-ccccc------CCCCcCEEE
Confidence            577778887776655555667777777777777754332 3335556666666666665 33222      124455555


Q ss_pred             ecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccc
Q 002129          605 ISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE  684 (962)
Q Consensus       605 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~  684 (962)
                      +++                       |. +..++.                                  .          
T Consensus       106 l~~-----------------------n~-l~~~~~----------------------------------~----------  117 (317)
T 3o53_A          106 AAN-----------------------NN-ISRVSC----------------------------------S----------  117 (317)
T ss_dssp             CCS-----------------------SC-CSEEEE----------------------------------C----------
T ss_pred             CCC-----------------------Cc-cCCcCc----------------------------------c----------
Confidence            544                       31 111110                                  0          


Q ss_pred             cCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccc-cCCCCccEEEcccCCCcccCCCCCCCccc
Q 002129          685 VGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGL-HNLCQLQEISIASCGNLVSSPEGGLPCAK  763 (962)
Q Consensus       685 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~  763 (962)
                        .+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++| .++.++... .+++
T Consensus       118 --~~-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~l~~  192 (317)
T 3o53_A          118 --RG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-VFAK  192 (317)
T ss_dssp             --CC-SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCC-CCTT
T ss_pred             --cc-CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCccccccc-cccc
Confidence              01 578888888888777777778888889999998888777666655 46888999999988 455555433 3678


Q ss_pred             ccccccccccccccCccccCCCcccceeecCCCCCCCCCCCC-CCCCccceEeecCchhhhHHHHhccccccccCcccee
Q 002129          764 LAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED-GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQL  842 (962)
Q Consensus       764 L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L  842 (962)
                      |++|++++|. +..+|..+..+++|++|++++| .+..+|.. ..+++|+.|++++|+......+   ..+..++.|+.|
T Consensus       193 L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~---~~~~~~~~L~~l  267 (317)
T 3o53_A          193 LKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQRVQTV  267 (317)
T ss_dssp             CCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHH---HHHHTCHHHHHH
T ss_pred             CCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHH---HHHhccccceEE
Confidence            9999999987 4556667888899999999998 55566553 5568889999998887733332   356778888888


Q ss_pred             ecccC
Q 002129          843 TIMNC  847 (962)
Q Consensus       843 ~l~~~  847 (962)
                      ++.++
T Consensus       268 ~l~~~  272 (317)
T 3o53_A          268 AKQTV  272 (317)
T ss_dssp             HHHHH
T ss_pred             ECCCc
Confidence            88764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.76  E-value=6.4e-18  Score=190.90  Aligned_cols=221  Identities=17%  Similarity=0.138  Sum_probs=147.7

Q ss_pred             cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCC-CCCcccccccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLAMLA  768 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~~L~  768 (962)
                      +++++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+.++++|++|+|++| .++.+|.. +..+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence            67777777777777766777777777777777777766666667777777777777777 45555554 44467777777


Q ss_pred             cccccccccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhhhHHHHhccccccccCccceeeccc
Q 002129          769 IYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMN  846 (962)
Q Consensus       769 l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  846 (962)
                      +++|......+..+.++++|++|++++|..+..++..  ..+++|++|++++|.+...      ..+..+++|++|++++
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~Ls~  227 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM------PNLTPLVGLEELEMSG  227 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC------CCCTTCTTCCEEECTT
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc------ccccccccccEEECcC
Confidence            7777744333346677777777777777677666543  4467777777777766543      2366777777777777


Q ss_pred             CCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCccc-ccccccCCCcCeEeccCCCCCccCCCCCC--cccccee
Q 002129          847 CDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERL-TSSIVDLQNLTGLVLGNCPKLKYFPEKGL--PSSLLQL  923 (962)
Q Consensus       847 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~sL~~L  923 (962)
                      |.  ...++.        ..+..+++|++|++++ +.+..+ +..+.++++|++|++++| +++.++...+  .++|+.|
T Consensus       228 N~--l~~~~~--------~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  295 (452)
T 3zyi_A          228 NH--FPEIRP--------GSFHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVEL  295 (452)
T ss_dssp             SC--CSEECG--------GGGTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEE
T ss_pred             Cc--CcccCc--------ccccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEE
Confidence            63  222221        2235667777777777 355555 345667777777777775 5777766544  2677777


Q ss_pred             eccCCh
Q 002129          924 SINRCP  929 (962)
Q Consensus       924 ~i~~c~  929 (962)
                      +++++|
T Consensus       296 ~L~~Np  301 (452)
T 3zyi_A          296 HLHHNP  301 (452)
T ss_dssp             ECCSSC
T ss_pred             EccCCC
Confidence            777665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.75  E-value=1.4e-17  Score=187.47  Aligned_cols=222  Identities=16%  Similarity=0.162  Sum_probs=185.9

Q ss_pred             ccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCC-CCCccccccc
Q 002129          689 PPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLAML  767 (962)
Q Consensus       689 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~~L  767 (962)
                      |++++.|++++|.+....+..|.++++|++|+|++|.+.+..+..+.++++|++|+|++| .++.+|.. +..+++|++|
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEE
T ss_pred             CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCcee
Confidence            378999999999988888899999999999999999987777788999999999999999 67777764 5668999999


Q ss_pred             ccccccccccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhhhHHHHhccccccccCccceeecc
Q 002129          768 AIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIM  845 (962)
Q Consensus       768 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  845 (962)
                      ++++|......+..+..+++|++|++++|..+..++..  ..+++|++|++++|.+...      ..+..+++|++|+++
T Consensus       142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~Ls  215 (440)
T 3zyj_A          142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI------PNLTPLIKLDELDLS  215 (440)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC------CCCTTCSSCCEEECT
T ss_pred             eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc------cccCCCcccCEEECC
Confidence            99999955544557899999999999999888877763  5679999999999987644      347889999999999


Q ss_pred             cCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcccc-cccccCCCcCeEeccCCCCCccCCCCCCc--cccce
Q 002129          846 NCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLT-SSIVDLQNLTGLVLGNCPKLKYFPEKGLP--SSLLQ  922 (962)
Q Consensus       846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--~sL~~  922 (962)
                      +|.  +..++.        ..+..+++|++|++++ +.++.++ ..+.++++|++|++++| +++.++...+.  ++|+.
T Consensus       216 ~N~--l~~~~~--------~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~  283 (440)
T 3zyj_A          216 GNH--LSAIRP--------GSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLER  283 (440)
T ss_dssp             TSC--CCEECT--------TTTTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCE
T ss_pred             CCc--cCccCh--------hhhccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCE
Confidence            973  333332        2346789999999999 5677765 46788999999999995 78888876553  89999


Q ss_pred             eeccCCh
Q 002129          923 LSINRCP  929 (962)
Q Consensus       923 L~i~~c~  929 (962)
                      |+++++|
T Consensus       284 L~L~~Np  290 (440)
T 3zyj_A          284 IHLHHNP  290 (440)
T ss_dssp             EECCSSC
T ss_pred             EEcCCCC
Confidence            9998887

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=2.9e-18  Score=194.44  Aligned_cols=235  Identities=11%  Similarity=0.026  Sum_probs=162.7

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE  604 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  604 (962)
                      ++|+.|++++|......|..+..+++|++|++++|.... .+++..+++|++|++++|. ++.++.      .++|++|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~-l~~l~~------~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLDLESLSTLRTLDLNNNY-VQELLV------GPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE-EEECTTCTTCCEEECCSSE-EEEEEE------CTTCCEEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC-CcccccCCCCCEEEecCCc-CCCCCC------CCCcCEEE
Confidence            578888888877666666677888888888888865433 3336666777777777765 333331      24555555


Q ss_pred             ecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccc
Q 002129          605 ISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE  684 (962)
Q Consensus       605 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~  684 (962)
                      +++|. ++.++..                                                                   
T Consensus       106 L~~N~-l~~~~~~-------------------------------------------------------------------  117 (487)
T 3oja_A          106 AANNN-ISRVSCS-------------------------------------------------------------------  117 (487)
T ss_dssp             CCSSC-CCCEEEC-------------------------------------------------------------------
T ss_pred             CcCCc-CCCCCcc-------------------------------------------------------------------
Confidence            55532 1111100                                                                   


Q ss_pred             cCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCcccc-CCCCccEEEcccCCCcccCCCCCCCccc
Q 002129          685 VGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLH-NLCQLQEISIASCGNLVSSPEGGLPCAK  763 (962)
Q Consensus       685 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~L~~~~~l~~~~~~~~~~~~  763 (962)
                        .+ ++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|..+. .+++|++|++++|. ++.+|.. ..+++
T Consensus       118 --~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~-~~l~~  192 (487)
T 3oja_A          118 --RG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ-VVFAK  192 (487)
T ss_dssp             --CC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC-CCCTT
T ss_pred             --cc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccccc-ccCCC
Confidence              01 5788888888888877777888888888888888888777777665 68888888888884 5555443 24678


Q ss_pred             ccccccccccccccCccccCCCcccceeecCCCCCCCCCCCC-CCCCccceEeecCchhhhHHHHhccccccccCcccee
Q 002129          764 LAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED-GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQL  842 (962)
Q Consensus       764 L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L  842 (962)
                      |+.|++++|.. ..+|..+..+++|+.|++++| .+..+|.. ..+++|+.|++++|+......+   ..+..++.|+.+
T Consensus       193 L~~L~Ls~N~l-~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~---~~~~~l~~L~~l  267 (487)
T 3oja_A          193 LKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQRVQTV  267 (487)
T ss_dssp             CCEEECCSSCC-CEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHH---HHHTTCHHHHHH
T ss_pred             CCEEECCCCCC-CCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchH---HHHHhCCCCcEE
Confidence            88889988874 456666888889999999988 45555553 5568889999999887733332   346778888888


Q ss_pred             ecc
Q 002129          843 TIM  845 (962)
Q Consensus       843 ~l~  845 (962)
                      ++.
T Consensus       268 ~~~  270 (487)
T 3oja_A          268 AKQ  270 (487)
T ss_dssp             HHH
T ss_pred             ecc
Confidence            886

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.73  E-value=3.5e-17  Score=172.58  Aligned_cols=202  Identities=21%  Similarity=0.223  Sum_probs=160.4

Q ss_pred             ccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccC-CCCCCCccccccc
Q 002129          689 PPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSS-PEGGLPCAKLAML  767 (962)
Q Consensus       689 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~-~~~~~~~~~L~~L  767 (962)
                      |++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+.++++|++|++++|..++.+ |..+..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            379999999999988877788999999999999999887777888999999999999999767777 5556678999999


Q ss_pred             ccccccccccCccccCCCcccceeecCCCCCCCCCCC--CCCCCccceEeecCchhhhHHHHhccccccccCccceeecc
Q 002129          768 AIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEE--DGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIM  845 (962)
Q Consensus       768 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  845 (962)
                      ++++|...+..|..+..+++|++|++++| .+..++.  .+.+++|++|++++|.+.....    ..+..+++|++|+++
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~  185 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLH  185 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccCH----HHhcCccccCEEECC
Confidence            99999976666778899999999999998 4555554  2457889999999987665433    457788899999998


Q ss_pred             cCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCccccc-ccccCCCcCeEeccCCC
Q 002129          846 NCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTS-SIVDLQNLTGLVLGNCP  906 (962)
Q Consensus       846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~  906 (962)
                      +|.  ...+..        .++..+++|++|++++ +.++.++. .+..+++|++|++.+++
T Consensus       186 ~n~--l~~~~~--------~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          186 QNR--VAHVHP--------HAFRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             SSC--CCEECT--------TTTTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             CCc--ccccCH--------hHccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCC
Confidence            863  222211        2235678888888888 46777764 46778888888888865

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.72  E-value=7.4e-18  Score=179.94  Aligned_cols=245  Identities=16%  Similarity=0.195  Sum_probs=128.8

Q ss_pred             cCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCcc-ccCccCC-------CCCCccEEEecCCCCccc
Q 002129          493 DVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLV-KLPQSSL-------SLSSLREIEIYGCRSLVS  564 (962)
Q Consensus       493 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~-~~~~~~~-------~l~~L~~L~l~~~~~l~~  564 (962)
                      ..++|+.|+++++ .+ .++..        ++..|+.|++++|.... .+|..+.       .+++|++|++++|.....
T Consensus        41 ~~~~L~~l~l~~n-~l-~~p~~--------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  110 (312)
T 1wwl_A           41 GGRSLEYLLKRVD-TE-ADLGQ--------FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT  110 (312)
T ss_dssp             EEEECTTHHHHCC-TT-CCCHH--------HHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC
T ss_pred             cCCCceeEeeccc-cc-ccHHH--------HHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch
Confidence            3455666666653 33 44432        12447777777766522 4444333       567777777777665545


Q ss_pred             cCCC---CCCCCCcEEEEcCCCCCCCChhhhhcCCC-----CCccEEEecCCCCCCcccCC--CCCCCCceEEecccCCC
Q 002129          565 FPEV---ALPSKLKKIEISSCDALKSLPEAWMCDTN-----SSLEILEISGCDSLTYIAGV--QLPPSLKRLKICHCDNI  634 (962)
Q Consensus       565 ~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~~l-----~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l  634 (962)
                      +|..   ..+++|++|++++|. ++.+|..+  ..+     ++|++|++++|. ++.++..  ...++|++|++++|.-.
T Consensus       111 ~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~  186 (312)
T 1wwl_A          111 APPPLLEATGPDLNILNLRNVS-WATRDAWL--AELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPEL  186 (312)
T ss_dssp             CCCCSSSCCSCCCSEEEEESCB-CSSSSSHH--HHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred             hHHHHHHhcCCCccEEEccCCC-CcchhHHH--HHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcC
Confidence            5542   557777777777776 44434322  222     677777777743 3333321  22344444444444321


Q ss_pred             ccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCch--hh-hhhcc
Q 002129          635 RTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLE--SI-AEMLD  711 (962)
Q Consensus       635 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~--~~-~~~~~  711 (962)
                      ..++.                                     +..+   .++.+ ++|++|++++|.+.+  .+ ...+.
T Consensus       187 ~~~~~-------------------------------------~~~~---~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~  225 (312)
T 1wwl_A          187 GERGL-------------------------------------ISAL---CPLKF-PTLQVLALRNAGMETPSGVCSALAA  225 (312)
T ss_dssp             HHHHH-------------------------------------HHHS---CTTSC-TTCCEEECTTSCCCCHHHHHHHHHH
T ss_pred             cchHH-------------------------------------HHHH---HhccC-CCCCEEECCCCcCcchHHHHHHHHh
Confidence            11100                                     0000   00111 566666666666552  12 23345


Q ss_pred             CCCCcceEeecCCccccccC-ccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccccCCCcccce
Q 002129          712 NNTSLEKINISGCGNLQTLP-SGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQE  790 (962)
Q Consensus       712 ~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~  790 (962)
                      .+++|++|++++|.+.+..| ..+..+++|++|++++| .++.+|....  ++|++|++++|. +..+|. +..+++|++
T Consensus       226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~  300 (312)
T 1wwl_A          226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGN  300 (312)
T ss_dssp             TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEE
T ss_pred             cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCCC-CCCChh-HhhCCCCCE
Confidence            66666666666666555443 33445666666666666 4456655444  466666666665 333344 556666666


Q ss_pred             eecCCCC
Q 002129          791 LRIGKGV  797 (962)
Q Consensus       791 L~l~~~~  797 (962)
                      |++++|+
T Consensus       301 L~L~~N~  307 (312)
T 1wwl_A          301 LSLKGNP  307 (312)
T ss_dssp             EECTTCT
T ss_pred             EeccCCC
Confidence            6666653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.72  E-value=5.2e-18  Score=181.58  Aligned_cols=57  Identities=23%  Similarity=0.270  Sum_probs=32.0

Q ss_pred             CCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccC
Q 002129          465 PQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEG  537 (962)
Q Consensus       465 ~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~  537 (962)
                      ..+++|++|++++|.++++..     +..+++|++|++++ +.++.++..          ++|++|++++|..
T Consensus        55 ~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~Ls~-n~l~~l~~~----------~~L~~L~l~~n~l  111 (317)
T 3o53_A           55 APFTKLELLNLSSNVLYETLD-----LESLSTLRTLDLNN-NYVQELLVG----------PSIETLHAANNNI  111 (317)
T ss_dssp             TTCTTCCEEECTTSCCEEEEE-----ETTCTTCCEEECCS-SEEEEEEEC----------TTCCEEECCSSCC
T ss_pred             hCCCcCCEEECCCCcCCcchh-----hhhcCCCCEEECcC-CccccccCC----------CCcCEEECCCCcc
Confidence            356677777777776665432     45566666666666 344444432          4555555555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.72  E-value=9.7e-18  Score=179.04  Aligned_cols=203  Identities=19%  Similarity=0.205  Sum_probs=117.7

Q ss_pred             cCCcccEEEecCCCCc-ccCccc--cCCCcCcEEEcCCCcccccChhhhcc-----CCccEEecCCCcchhccchhhhcc
Q 002129           87 KLQSLRVFSLRGYRIL-ELPDSV--GDLRYLRYLNLSGTEIRTLPESVSKL-----YNLHSLLLEDCDRLEKLCADMGNL  158 (962)
Q Consensus        87 ~l~~L~~L~L~~~~i~-~lp~~~--~~L~~L~~L~Ls~n~i~~lp~~i~~L-----~~L~~L~L~~~~~~~~lp~~i~~L  158 (962)
                      ++++|++|+|++|.++ .+|..+  +.+++|++|+|++|.++.+|..++.+     ++|++|++++|...+..|..++.+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            4666666676666666 456554  66666677777666666666656665     666667666644333333566666


Q ss_pred             CCCcEEeccCCccccc--ccccc--cccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccC
Q 002129          159 VKLHHLKNSNTKSLEE--MPVGI--GRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLD  234 (962)
Q Consensus       159 ~~L~~L~l~~n~~~~~--lp~~~--~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~  234 (962)
                      ++|++|++++|.+.+.  +|..+  +.+++|++|++..+..                           ..........+.
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l---------------------------~~~~~~~~~~~~  225 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM---------------------------ETPSGVCSALAA  225 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC---------------------------CCHHHHHHHHHH
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC---------------------------cchHHHHHHHHh
Confidence            6667776666663332  23333  5666666664322110                           011111222234


Q ss_pred             CCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCCCC
Q 002129          235 RKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSV  314 (962)
Q Consensus       235 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l  314 (962)
                      .+++|+.|++++|......        ....+..+++|++|++++|....+|.++.    ++|++|++++|.+.+. |.+
T Consensus       226 ~l~~L~~L~Ls~N~l~~~~--------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~~~-p~~  292 (312)
T 1wwl_A          226 ARVQLQGLDLSHNSLRDAA--------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDRN-PSP  292 (312)
T ss_dssp             TTCCCSEEECTTSCCCSSC--------CCSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCCSC-CCT
T ss_pred             cCCCCCEEECCCCcCCccc--------chhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCCCCC-hhH
Confidence            5667777777766533211        11233445677777777777777776653    6777777777775544 556


Q ss_pred             CCCCCCCeEEEcCCC
Q 002129          315 GQLPSLKHLTVRGMS  329 (962)
Q Consensus       315 ~~l~~L~~L~L~~~~  329 (962)
                      ..+++|++|++++|+
T Consensus       293 ~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          293 DELPQVGNLSLKGNP  307 (312)
T ss_dssp             TTSCEEEEEECTTCT
T ss_pred             hhCCCCCEEeccCCC
Confidence            677777777777664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.69  E-value=2.6e-16  Score=164.95  Aligned_cols=200  Identities=17%  Similarity=0.134  Sum_probs=123.4

Q ss_pred             CceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccC-hhhhccC
Q 002129           59 QHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLP-ESVSKLY  135 (962)
Q Consensus        59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp-~~i~~L~  135 (962)
                      ++|++|.+.++.       ...+++..+ ++++|++|++++|.++.++ ..|+.+++|++|+|++|.++.++ ..+++++
T Consensus        28 ~~l~~L~ls~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (276)
T 2z62_A           28 FSTKNLDLSFNP-------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS  100 (276)
T ss_dssp             TTCCEEECTTCC-------CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred             CCccEEECCCCc-------ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence            357777765543       344444344 7777777777777777664 36777777788888777777665 4577777


Q ss_pred             CccEEecCCCcchhccc-hhhhccCCCcEEeccCCccccc--ccccccccccccccceeeecCCCCCCcccccccccccc
Q 002129          136 NLHSLLLEDCDRLEKLC-ADMGNLVKLHHLKNSNTKSLEE--MPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRG  212 (962)
Q Consensus       136 ~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~n~~~~~--lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~  212 (962)
                      +|++|++++|. +..++ ..++.+++|++|++++|. +..  +|..++.+++|++|++..+....               
T Consensus       101 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~---------------  163 (276)
T 2z62_A          101 SLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQS---------------  163 (276)
T ss_dssp             TCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCE---------------
T ss_pred             cccEEECCCCC-ccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCc---------------
Confidence            77777777754 44443 357777777788777777 443  56667777777777543321100               


Q ss_pred             eeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcc-eEEEeccCCCCCCccccC
Q 002129          213 TLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLE-QFCIKGYGGMKFPTWLGD  291 (962)
Q Consensus       213 ~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~-~L~l~~~~~~~~p~~~~~  291 (962)
                                     .....+..+.+|+                              .+. .|+++++....+|...+ 
T Consensus       164 ---------------~~~~~~~~l~~L~------------------------------~l~l~L~ls~n~l~~~~~~~~-  197 (276)
T 2z62_A          164 ---------------IYCTDLRVLHQMP------------------------------LLNLSLDLSLNPMNFIQPGAF-  197 (276)
T ss_dssp             ---------------ECGGGGHHHHTCT------------------------------TCCEEEECCSSCCCEECTTSS-
T ss_pred             ---------------CCHHHhhhhhhcc------------------------------ccceeeecCCCcccccCcccc-
Confidence                           0000011111111                              111 34555555555555544 


Q ss_pred             CCCCCceEEEEecCCCCCCCC-CCCCCCCCCeEEEcCCC
Q 002129          292 SSFSKLVTLKFKNCDMCTALP-SVGQLPSLKHLTVRGMS  329 (962)
Q Consensus       292 ~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~  329 (962)
                       ...+|+.|++++|.+....+ .++.+++|++|++++|+
T Consensus       198 -~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          198 -KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             -CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             -CCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence             24578888888888665544 36788889999988875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.69  E-value=2.7e-16  Score=160.75  Aligned_cols=126  Identities=14%  Similarity=0.184  Sum_probs=79.9

Q ss_pred             cCccEEEecCCCCchhhhhhccCCCCcc---eEeecCC-ccccccCccccCCCCcc-EEEcccCCCcccCCCCCCCcccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLDNNTSLE---KINISGC-GNLQTLPSGLHNLCQLQ-EISIASCGNLVSSPEGGLPCAKL  764 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~L~~~~~l~~~~~~~~~~~~L  764 (962)
                      ++|++|++++|.+.+ +|. +..+++|+   +|++++| .+.+..+..+.++++|+ +|++++| .++.+|...+..++|
T Consensus       105 ~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L  181 (239)
T 2xwt_C          105 PLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKL  181 (239)
T ss_dssp             TTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEE
T ss_pred             CCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCC
Confidence            466667776666544 443 66666666   7777777 43333334567777777 7777777 455666655555677


Q ss_pred             cccccccccccccCc-cccCCC-cccceeecCCCCCCCCCCCCCCCCccceEeecCch
Q 002129          765 AMLAIYNCKRLEALP-KGLHNL-KSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNM  820 (962)
Q Consensus       765 ~~L~l~~c~~l~~~~-~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~  820 (962)
                      +.|++++|+.+..+| ..+..+ ++|++|++++| .++.+|.. .+++|+.|+++++.
T Consensus       182 ~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTW  237 (239)
T ss_dssp             EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC-
T ss_pred             CEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-HhccCceeeccCcc
Confidence            788887775344443 456777 78888888776 45555543 45666666666653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.69  E-value=2.1e-16  Score=161.60  Aligned_cols=200  Identities=19%  Similarity=0.176  Sum_probs=138.4

Q ss_pred             cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccC-ccccCCCCccEEEcccCCCcccCCCC-CCCccccccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLP-SGLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLAML  767 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~~L  767 (962)
                      +++++|++++|.+.+..+..|.++++|++|++++|..++.++ ..+.++++|++|++++|..++.++.. +..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            789999999998877777789999999999999987444444 47888999999999984467777653 4457788888


Q ss_pred             ccccccccccCccccCCCcccc---eeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccc-eee
Q 002129          768 AIYNCKRLEALPKGLHNLKSLQ---ELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLR-QLT  843 (962)
Q Consensus       768 ~l~~c~~l~~~~~~~~~l~~L~---~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L~  843 (962)
                      ++++|. +..+|. +..+++|+   +|++++|+.++.++.                          ..+..+++|+ +|+
T Consensus       111 ~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--------------------------~~~~~l~~L~~~L~  162 (239)
T 2xwt_C          111 GIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV--------------------------NAFQGLCNETLTLK  162 (239)
T ss_dssp             EEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT--------------------------TTTTTTBSSEEEEE
T ss_pred             eCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCc--------------------------ccccchhcceeEEE
Confidence            888887 445665 66777776   777777755555443                          2355666666 666


Q ss_pred             cccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCccccc-ccccC-CCcCeEeccCCCCCccCCCCCCccccc
Q 002129          844 IMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTS-SIVDL-QNLTGLVLGNCPKLKYFPEKGLPSSLL  921 (962)
Q Consensus       844 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~sL~  921 (962)
                      +++|.  ...+|...        +.. ++|++|+++++..++.+|. .+.++ ++|++|++++ ++++.+|.. ..++|+
T Consensus       163 l~~n~--l~~i~~~~--------~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~  229 (239)
T 2xwt_C          163 LYNNG--FTSVQGYA--------FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLK  229 (239)
T ss_dssp             CCSCC--CCEECTTT--------TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCS
T ss_pred             cCCCC--CcccCHhh--------cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCc
Confidence            66652  33444322        122 5777777777545777754 35666 7777888877 457777665 336777


Q ss_pred             eeeccCChh
Q 002129          922 QLSINRCPL  930 (962)
Q Consensus       922 ~L~i~~c~~  930 (962)
                      .|++.+|+.
T Consensus       230 ~L~l~~~~~  238 (239)
T 2xwt_C          230 ELIARNTWT  238 (239)
T ss_dssp             EEECTTC--
T ss_pred             eeeccCccC
Confidence            777777764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.68  E-value=2.7e-16  Score=165.28  Aligned_cols=198  Identities=19%  Similarity=0.168  Sum_probs=120.0

Q ss_pred             cCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCccc-CccccCCCcCcEEEcCCCcccccChhhhcc
Q 002129           56 YDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTLPESVSKL  134 (962)
Q Consensus        56 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L  134 (962)
                      .++++++++.+.++.       ...+|+.+.  +.+++|+|++|.++.+ |..|..+++|++|+|++|.++.+|.. +.+
T Consensus         7 ~~l~~l~~l~~~~~~-------l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l   76 (290)
T 1p9a_G            7 SKVASHLEVNCDKRN-------LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTL   76 (290)
T ss_dssp             ECSTTCCEEECTTSC-------CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCC
T ss_pred             cccCCccEEECCCCC-------CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCC
Confidence            455566666554432       334454443  4666677777766655 35566677777777777766666543 566


Q ss_pred             CCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccc-cccccccccccceeeecCCCCCCcccccccccccce
Q 002129          135 YNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPV-GIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGT  213 (962)
Q Consensus       135 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~-~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~  213 (962)
                      ++|++|++++ +.+..+|..+..+++|++|++++|+ +..+|. .|+.+++|++|++                       
T Consensus        77 ~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L-----------------------  131 (290)
T 1p9a_G           77 PVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL-----------------------  131 (290)
T ss_dssp             TTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEEC-----------------------
T ss_pred             CcCCEEECCC-CcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEEC-----------------------
Confidence            6677777766 3455666666666677777777666 555543 3555555555533                       


Q ss_pred             eEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCC
Q 002129          214 LCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSS  293 (962)
Q Consensus       214 l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~  293 (962)
                                                     ++|.....         ....+..+++|+.|++++|....+|...+. .
T Consensus       132 -------------------------------~~N~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~  170 (290)
T 1p9a_G          132 -------------------------------KGNELKTL---------PPGLLTPTPKLEKLSLANNNLTELPAGLLN-G  170 (290)
T ss_dssp             -------------------------------TTSCCCCC---------CTTTTTTCTTCCEEECTTSCCSCCCTTTTT-T
T ss_pred             -------------------------------CCCCCCcc---------ChhhcccccCCCEEECCCCcCCccCHHHhc-C
Confidence                                           22221111         012234456677777777777777765543 5


Q ss_pred             CCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCC
Q 002129          294 FSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMS  329 (962)
Q Consensus       294 l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~  329 (962)
                      +++|+.|++++|.+....+.+...+.|+.|++++|+
T Consensus       171 l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          171 LENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence            778888888888766544466677788888887775

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.68  E-value=5.4e-16  Score=161.67  Aligned_cols=175  Identities=25%  Similarity=0.344  Sum_probs=101.7

Q ss_pred             CcccEEEecCCCCcccCc-cccCCCcCcEEEcCCCcccccChh-hhccCCccEEecCCCcchhccch-hhhccCCCcEEe
Q 002129           89 QSLRVFSLRGYRILELPD-SVGDLRYLRYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCA-DMGNLVKLHHLK  165 (962)
Q Consensus        89 ~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~  165 (962)
                      ++|++|++++|.++.+|. .|.++++|++|+|++|.++.+|.. +.++++|++|++++| .+..+|. .+..+++|++|+
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEE
Confidence            456666666666666543 566666666666666666666544 466666666666664 3444443 356666666666


Q ss_pred             ccCCccccccccc-ccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEE
Q 002129          166 NSNTKSLEEMPVG-IGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWL  244 (962)
Q Consensus       166 l~~n~~~~~lp~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l  244 (962)
                      +++|. +..+|.. ++.+++|++|+                                                      +
T Consensus       116 l~~n~-l~~~~~~~~~~l~~L~~L~------------------------------------------------------L  140 (270)
T 2o6q_A          116 LDRNQ-LKSLPPRVFDSLTKLTYLS------------------------------------------------------L  140 (270)
T ss_dssp             CCSSC-CCCCCTTTTTTCTTCCEEE------------------------------------------------------C
T ss_pred             CCCCc-cCeeCHHHhCcCcCCCEEE------------------------------------------------------C
Confidence            66666 4444432 45555555553                                                      3


Q ss_pred             EeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCC-CCCCCCCCCeE
Q 002129          245 RWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALP-SVGQLPSLKHL  323 (962)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L  323 (962)
                      ++|......         ...+..+++|+.|+++++....+|...+. .+++|++|++++|.+....+ .+..+++|+.|
T Consensus       141 s~n~l~~~~---------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (270)
T 2o6q_A          141 GYNELQSLP---------KGVFDKLTSLKELRLYNNQLKRVPEGAFD-KLTELKTLKLDNNQLKRVPEGAFDSLEKLKML  210 (270)
T ss_dssp             CSSCCCCCC---------TTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCCcCCccC---------HhHccCCcccceeEecCCcCcEeChhHhc-cCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence            322211110         11234455666666666666666654332 46777788887777655444 36677778888


Q ss_pred             EEcCCC
Q 002129          324 TVRGMS  329 (962)
Q Consensus       324 ~L~~~~  329 (962)
                      ++++|+
T Consensus       211 ~l~~N~  216 (270)
T 2o6q_A          211 QLQENP  216 (270)
T ss_dssp             ECCSSC
T ss_pred             EecCCC
Confidence            877775

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.67  E-value=1.3e-16  Score=180.99  Aligned_cols=214  Identities=15%  Similarity=0.086  Sum_probs=154.1

Q ss_pred             cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAI  769 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l  769 (962)
                      ++|++|++++|.+.+..|..|..+++|++|+|++|.+.+..|  +..+++|++|++++| .++.+|.    .++|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEEEC
Confidence            578888888888887777888888888888888888766554  788888888888888 5665553    268888888


Q ss_pred             ccccccccCccccCCCcccceeecCCCCCCCCC-CC-CCCCCccceEeecCchhhhHHHHhccccccccCccceeecccC
Q 002129          770 YNCKRLEALPKGLHNLKSLQELRIGKGVALPSL-EE-DGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNC  847 (962)
Q Consensus       770 ~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  847 (962)
                      ++|...+..+   ..+++|+.|++++|. +..+ +. .+.+++|++|++++|.+....+.   .....+++|++|++++|
T Consensus       107 ~~N~l~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          107 ANNNISRVSC---SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             CSSCCCCEEE---CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGG---GGGGGTTTCCEEECTTS
T ss_pred             cCCcCCCCCc---cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChH---HHhhhCCcccEEecCCC
Confidence            8887544333   246788888888884 4433 32 24468888888888877664442   22236888888888887


Q ss_pred             CCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcccccccccCCCcCeEeccCCCCCccCCCC-CCccccceeecc
Q 002129          848 DDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEK-GLPSSLLQLSIN  926 (962)
Q Consensus       848 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~sL~~L~i~  926 (962)
                      .  +..++.          ...+++|++|++++ +.++.+|+.+..+++|+.|++++| .+..+|.. +..++|+.|+++
T Consensus       180 ~--l~~~~~----------~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~  245 (487)
T 3oja_A          180 F--IYDVKG----------QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLR  245 (487)
T ss_dssp             C--CCEEEC----------CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECT
T ss_pred             c--cccccc----------cccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcC
Confidence            4  333322          12478888888888 578888877888888888888884 57777764 234788888888


Q ss_pred             CChhh
Q 002129          927 RCPLI  931 (962)
Q Consensus       927 ~c~~l  931 (962)
                      +|+..
T Consensus       246 ~N~l~  250 (487)
T 3oja_A          246 GNGFH  250 (487)
T ss_dssp             TCCBC
T ss_pred             CCCCc
Confidence            87643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.66  E-value=4.5e-16  Score=163.15  Aligned_cols=202  Identities=18%  Similarity=0.101  Sum_probs=149.8

Q ss_pred             CccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccc
Q 002129          688 LPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAML  767 (962)
Q Consensus       688 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L  767 (962)
                      +|++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++|
T Consensus        26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            34789999999999887777789999999999999998776666788999999999999995444444556778899999


Q ss_pred             ccccccccccCccccCCCcccceeecCCCCCCCC--CCC-CCCCCccceEeecCchhhhHHHHhccccccccCccc----
Q 002129          768 AIYNCKRLEALPKGLHNLKSLQELRIGKGVALPS--LEE-DGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLR----  840 (962)
Q Consensus       768 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~----  840 (962)
                      ++++|......+..+..+++|++|++++|. +..  +|. ...+++|++|++++|.+.....    ..+..+++|+    
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~l~l  180 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMPLLNL  180 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECG----GGGHHHHTCTTCCE
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCH----HHhhhhhhccccce
Confidence            999998655555578899999999999984 443  333 2456888888888887665433    3445555555    


Q ss_pred             eeecccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcccccc-cccCCCcCeEeccCCC
Q 002129          841 QLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSS-IVDLQNLTGLVLGNCP  906 (962)
Q Consensus       841 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~  906 (962)
                      .|++++|.  ...++...         ....+|++|++++ +.++.+|.. +..+++|++|++++++
T Consensus       181 ~L~ls~n~--l~~~~~~~---------~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          181 SLDLSLNP--MNFIQPGA---------FKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             EEECCSSC--CCEECTTS---------SCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             eeecCCCc--ccccCccc---------cCCCcccEEECCC-CceeecCHhHhcccccccEEEccCCc
Confidence            78888863  33444322         1234788888888 457777765 4678888888888754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.66  E-value=2.4e-15  Score=163.29  Aligned_cols=97  Identities=16%  Similarity=0.124  Sum_probs=44.1

Q ss_pred             hhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCC-c-ccccccccccccccccCccccCC
Q 002129          707 AEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLP-C-AKLAMLAIYNCKRLEALPKGLHN  784 (962)
Q Consensus       707 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~-~-~~L~~L~l~~c~~l~~~~~~~~~  784 (962)
                      +.+|..+++|++|++++|.+....+..+....++..|++.++..+..++...+. + ..++.|++++|. ++.+|.....
T Consensus        97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~  175 (350)
T 4ay9_X           97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFN  175 (350)
T ss_dssp             TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSST
T ss_pred             chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhcc
Confidence            444455555555555554443333333334444555555544444444433211 1 234455555554 3344444334


Q ss_pred             CcccceeecCCCCCCCCCCC
Q 002129          785 LKSLQELRIGKGVALPSLEE  804 (962)
Q Consensus       785 l~~L~~L~l~~~~~l~~~~~  804 (962)
                      .++|+++++.++..++.+|.
T Consensus       176 ~~~L~~l~l~~~n~l~~i~~  195 (350)
T 4ay9_X          176 GTQLDELNLSDNNNLEELPN  195 (350)
T ss_dssp             TEEEEEEECTTCTTCCCCCT
T ss_pred             ccchhHHhhccCCcccCCCH
Confidence            44555555554444444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.66  E-value=1.3e-15  Score=160.01  Aligned_cols=105  Identities=21%  Similarity=0.153  Sum_probs=58.7

Q ss_pred             CccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCC-CCccccccccc
Q 002129          691 SLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGG-LPCAKLAMLAI  769 (962)
Q Consensus       691 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~-~~~~~L~~L~l  769 (962)
                      +|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++| .++.+|... ..+++|+.|++
T Consensus       101 ~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L  179 (290)
T 1p9a_G          101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLL  179 (290)
T ss_dssp             TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEEC
Confidence            4444444444444444444555555666666655554444444555666666666665 445555443 23556666666


Q ss_pred             ccccccccCccccCCCcccceeecCCCC
Q 002129          770 YNCKRLEALPKGLHNLKSLQELRIGKGV  797 (962)
Q Consensus       770 ~~c~~l~~~~~~~~~l~~L~~L~l~~~~  797 (962)
                      ++|. +..+|..+...++|+.+++++|+
T Consensus       180 ~~N~-l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          180 QENS-LYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             CCCc-CCccChhhcccccCCeEEeCCCC
Confidence            6665 44566666666667777777664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.64  E-value=4.4e-16  Score=165.49  Aligned_cols=60  Identities=15%  Similarity=0.217  Sum_probs=41.9

Q ss_pred             CCCCCCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCC
Q 002129          266 LKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMS  329 (962)
Q Consensus       266 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~  329 (962)
                      +..+++|+.|++++|....++. +.  .+++|++|++++|.+.+. +++..+++|++|++++|+
T Consensus       169 l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          169 LANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCBC-GGGTTCTTCCEEEEEEEE
T ss_pred             hcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCcc-ccccCCCCCCEEEccCCe
Confidence            4455667777777777666665 22  478888888888876543 357788888888888775

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.64  E-value=1.4e-15  Score=165.10  Aligned_cols=222  Identities=20%  Similarity=0.154  Sum_probs=172.9

Q ss_pred             ccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCc-cccCCCCccEEEcccCCCcccCCCC-CCCcccccc
Q 002129          689 PPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPS-GLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLAM  766 (962)
Q Consensus       689 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~~  766 (962)
                      |+++++|++++|.+....+.+|.++++|++|+|++|.+.+.+|. .+.++++|+++.+.++..+..++.. +..+++|++
T Consensus        29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            47899999999987766667899999999999999998887764 5688999887666655577777554 556889999


Q ss_pred             cccccccccccCccccCCCcccceeecCCCCCCCCCCCC---CCCCccceEeecCchhhhHHHHhccccccccCccceee
Q 002129          767 LAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED---GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLT  843 (962)
Q Consensus       767 L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~  843 (962)
                      |++++|......+..+....++..+++.++..+..++..   +....++.|++++|.+.....     .....++|++|+
T Consensus       109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~-----~~f~~~~L~~l~  183 (350)
T 4ay9_X          109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN-----SAFNGTQLDELN  183 (350)
T ss_dssp             EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT-----TSSTTEEEEEEE
T ss_pred             ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh-----hhccccchhHHh
Confidence            999999854444445667778889999888788777654   334678899999998765433     234567899999


Q ss_pred             cccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcccccccccCCCcCeEeccCCCCCccCCCCCCcccccee
Q 002129          844 IMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQL  923 (962)
Q Consensus       844 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L  923 (962)
                      +.++. ....+|.+.        +..+++|++|++++ +.++.+|.  ..|.+|++|.+.+|++++.+|.-.-.++|+.+
T Consensus       184 l~~~n-~l~~i~~~~--------f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l  251 (350)
T 4ay9_X          184 LSDNN-NLEELPNDV--------FHGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEA  251 (350)
T ss_dssp             CTTCT-TCCCCCTTT--------TTTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEE
T ss_pred             hccCC-cccCCCHHH--------hccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhC
Confidence            98743 666676543        46889999999999 58999997  56889999999999999999974444788888


Q ss_pred             eccC
Q 002129          924 SINR  927 (962)
Q Consensus       924 ~i~~  927 (962)
                      ++.+
T Consensus       252 ~l~~  255 (350)
T 4ay9_X          252 SLTY  255 (350)
T ss_dssp             ECSC
T ss_pred             cCCC
Confidence            8754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.63  E-value=2.2e-15  Score=160.66  Aligned_cols=200  Identities=14%  Similarity=0.149  Sum_probs=129.9

Q ss_pred             hhcceeecccccCccccCccC--CCCCCccEEEecCCCCccccCC-----CCCCCCCcEEEEcCCCCCCCChhhhhcCCC
Q 002129          525 ELLEYLRLSYCEGLVKLPQSS--LSLSSLREIEIYGCRSLVSFPE-----VALPSKLKKIEISSCDALKSLPEAWMCDTN  597 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~--~~l~~L~~L~l~~~~~l~~~~~-----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l  597 (962)
                      ++|++|++++|...+..|..+  ..+++|++|++++|......+.     ...+++|++|++++|.. ..++...+ ..+
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~-~~l  168 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQV-RAF  168 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTTSC-CCC
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhHHHh-ccC
Confidence            668889998888777777766  7788888888888765443321     22467777777777773 44443332 566


Q ss_pred             CCccEEEecCCCCCCc--ccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCC
Q 002129          598 SSLEILEISGCDSLTY--IAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNE  675 (962)
Q Consensus       598 ~~L~~L~l~~c~~l~~--~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  675 (962)
                      ++|++|++++|.....  ++....                                                        
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~--------------------------------------------------------  192 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALC--------------------------------------------------------  192 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSC--------------------------------------------------------
T ss_pred             CCCCEEECCCCCCccchhhhHHHh--------------------------------------------------------
Confidence            7777777777532211  110000                                                        


Q ss_pred             ccccccccccCCCccCccEEEecCCCCchh--hhh-hccCCCCcceEeecCCccccccCccccCC---CCccEEEcccCC
Q 002129          676 LPATLESLEVGNLPPSLKLLLVWGCSKLES--IAE-MLDNNTSLEKINISGCGNLQTLPSGLHNL---CQLQEISIASCG  749 (962)
Q Consensus       676 ~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~--~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~L~~~~  749 (962)
                               .+.+ ++|++|++++|.....  .+. .++.+++|++|++++|.+.+..|..+..+   ++|++|++++| 
T Consensus       193 ---------~~~l-~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-  261 (310)
T 4glp_A          193 ---------PHKF-PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-  261 (310)
T ss_dssp             ---------TTSS-CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-
T ss_pred             ---------hhcC-CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-
Confidence                     0011 5677777777766422  222 35678888888888888777667666665   68888888888 


Q ss_pred             CcccCCCCCCCcccccccccccccccccCccccCCCcccceeecCCCC
Q 002129          750 NLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGV  797 (962)
Q Consensus       750 ~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~  797 (962)
                      .++.+|....  ++|+.|++++|.. ..+|. +..+++|+.|++++|+
T Consensus       262 ~l~~lp~~~~--~~L~~L~Ls~N~l-~~~~~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          262 GLEQVPKGLP--AKLRVLDLSSNRL-NRAPQ-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCCSCCSCCC--SCCSCEECCSCCC-CSCCC-TTSCCCCSCEECSSTT
T ss_pred             CCCchhhhhc--CCCCEEECCCCcC-CCCch-hhhCCCccEEECcCCC
Confidence            5667776554  5888888888873 34443 5677777888877774

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.63  E-value=4.7e-15  Score=154.67  Aligned_cols=207  Identities=14%  Similarity=0.140  Sum_probs=136.0

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE  604 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  604 (962)
                      ++|+.|++++|.. +.++ .+..+++|++|++++|. ++.++.+..+++|++|++++|. ++.++...+ ..+++|++|+
T Consensus        41 ~~L~~L~l~~~~i-~~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~  115 (272)
T 3rfs_A           41 NSIDQIIANNSDI-KSVQ-GIQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQ-LQSLPNGVF-DKLTNLKELV  115 (272)
T ss_dssp             TTCCEEECTTSCC-CCCT-TGGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSC-CCCCCTTTT-TTCTTCCEEE
T ss_pred             cceeeeeeCCCCc-cccc-ccccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCc-cCccChhHh-cCCcCCCEEE
Confidence            5566666666543 2333 35566777777777654 4445555666777777777765 444444333 5667777777


Q ss_pred             ecCCCCCCcccCC--CCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccc
Q 002129          605 ISGCDSLTYIAGV--QLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLES  682 (962)
Q Consensus       605 l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~  682 (962)
                      +++|. ++.++..  ..+++|+.|++++| .++.++..                                      .+  
T Consensus       116 L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~--------------------------------------~~--  153 (272)
T 3rfs_A          116 LVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKG--------------------------------------VF--  153 (272)
T ss_dssp             CTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT--------------------------------------TT--
T ss_pred             CCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHH--------------------------------------Hh--
Confidence            77743 4444332  33456666666655 22222210                                      00  


Q ss_pred             cccCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcc
Q 002129          683 LEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCA  762 (962)
Q Consensus       683 l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~  762 (962)
                         +.+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|+...       .++
T Consensus       154 ---~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~  222 (272)
T 3rfs_A          154 ---DKL-TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCP  222 (272)
T ss_dssp             ---TTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTT
T ss_pred             ---ccC-ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCc
Confidence               111 688999999998877777778889999999999988887777778889999999999985432       345


Q ss_pred             cccccccccccccccCccccCCCcccc
Q 002129          763 KLAMLAIYNCKRLEALPKGLHNLKSLQ  789 (962)
Q Consensus       763 ~L~~L~l~~c~~l~~~~~~~~~l~~L~  789 (962)
                      +|+.|+++.|...+.+|..++.++...
T Consensus       223 ~l~~l~~~~n~~~g~ip~~~~~~~~~~  249 (272)
T 3rfs_A          223 GIRYLSEWINKHSGVVRNSAGSVAPDS  249 (272)
T ss_dssp             TTHHHHHHHHHTGGGBBCTTSCBCGGG
T ss_pred             HHHHHHHHHHhCCCcccCcccccCCCC
Confidence            789999999988888888877766543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.62  E-value=1.9e-15  Score=157.62  Aligned_cols=220  Identities=16%  Similarity=0.097  Sum_probs=151.5

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE  604 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  604 (962)
                      ..+..+++.++......  ....+++|++|++++| .++.++.+..+++|++|++++|. +..++ .+  ..+++|++|+
T Consensus        19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~-~i~~~~~l~~l~~L~~L~l~~n~-l~~~~-~l--~~l~~L~~L~   91 (272)
T 3rfs_A           19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNS-DIKSVQGIQYLPNVRYLALGGNK-LHDIS-AL--KELTNLTYLI   91 (272)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTS-CCCCCTTGGGCTTCCEEECTTSC-CCCCG-GG--TTCTTCCEEE
T ss_pred             HHHHHHHhcCccccccc--ccccccceeeeeeCCC-CcccccccccCCCCcEEECCCCC-CCCch-hh--cCCCCCCEEE
Confidence            55566666665433322  2456889999999986 46667777888999999999987 55554 22  6778888888


Q ss_pred             ecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccc
Q 002129          605 ISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE  684 (962)
Q Consensus       605 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~  684 (962)
                      +++| .++.++...+                                                                 
T Consensus        92 L~~n-~l~~~~~~~~-----------------------------------------------------------------  105 (272)
T 3rfs_A           92 LTGN-QLQSLPNGVF-----------------------------------------------------------------  105 (272)
T ss_dssp             CTTS-CCCCCCTTTT-----------------------------------------------------------------
T ss_pred             CCCC-ccCccChhHh-----------------------------------------------------------------
Confidence            8885 3333222100                                                                 


Q ss_pred             cCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCC-CCCccc
Q 002129          685 VGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG-GLPCAK  763 (962)
Q Consensus       685 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~  763 (962)
                       +.+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++| .++.++.. +..+++
T Consensus       106 -~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~  182 (272)
T 3rfs_A          106 -DKL-TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQ  182 (272)
T ss_dssp             -TTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             -cCC-cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCcc
Confidence             001 57777888887777666667788888888888888766555566778888888888888 45555544 355778


Q ss_pred             ccccccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHH
Q 002129          764 LAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSM  826 (962)
Q Consensus       764 L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~  826 (962)
                      |+.|++++|...+..+..+..+++|++|++++|+..      +.++.|+.++++.|......+
T Consensus       183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip  239 (272)
T 3rfs_A          183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVR  239 (272)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBB
T ss_pred             CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCccc
Confidence            888888888865555556788888888888888543      234567777777776655444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.61  E-value=7.3e-15  Score=153.12  Aligned_cols=152  Identities=18%  Similarity=0.146  Sum_probs=99.5

Q ss_pred             cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCC-CCCcccccccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLAMLA  768 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~~L~  768 (962)
                      +++++|++++|.+.+..+..|.++++|++|++++|.+....+..+.++++|++|++++| .+..+|.. +..+++|++|+
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEE
Confidence            67888888888877666667888888888888887766544455677888888888888 45555544 34577888888


Q ss_pred             cccccccccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhhhHHHHhccccccccCccceeeccc
Q 002129          769 IYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMN  846 (962)
Q Consensus       769 l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  846 (962)
                      +++|......+..+..+++|++|++++| .+..++..  ..+++|++|++++|.+.....    ..+..+++|++|++++
T Consensus       116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~  190 (270)
T 2o6q_A          116 LDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVPE----GAFDKLTELKTLKLDN  190 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCS
T ss_pred             CCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEeCh----hHhccCCCcCEEECCC
Confidence            8888755554556778888888888887 45555442  334555555555554433222    2344444555555544


Q ss_pred             C
Q 002129          847 C  847 (962)
Q Consensus       847 ~  847 (962)
                      |
T Consensus       191 N  191 (270)
T 2o6q_A          191 N  191 (270)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.60  E-value=2.7e-15  Score=159.38  Aligned_cols=194  Identities=18%  Similarity=0.212  Sum_probs=131.6

Q ss_pred             cCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccC
Q 002129           56 YDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLY  135 (962)
Q Consensus        56 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~  135 (962)
                      .++++|++|.+.++.       ...+ +.+..+++|++|++++|.++.++. +..+++|++|+|++|.++.+| .++.++
T Consensus        38 ~~l~~L~~L~l~~~~-------i~~l-~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~  107 (308)
T 1h6u_A           38 ADLDGITTLSAFGTG-------VTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQ  107 (308)
T ss_dssp             HHHHTCCEEECTTSC-------CCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCT
T ss_pred             HHcCCcCEEEeeCCC-------ccCc-hhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCC
Confidence            456677777765542       2223 344577888888888888777766 777888888888888877775 477788


Q ss_pred             CccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccccceeeecCCCCCCcccccccccccceeE
Q 002129          136 NLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLC  215 (962)
Q Consensus       136 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~  215 (962)
                      +|++|++++| .+..+|. ++.+++|++|++++|. +..++. ++.+++|+.|++..+...                   
T Consensus       108 ~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~-------------------  164 (308)
T 1h6u_A          108 SIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVS-------------------  164 (308)
T ss_dssp             TCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCC-------------------
T ss_pred             CCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCC-------------------
Confidence            8888888874 4555553 7778888888888877 555554 677777777754322110                   


Q ss_pred             EecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCC
Q 002129          216 ISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFS  295 (962)
Q Consensus       216 ~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~  295 (962)
                                 . ... +..+++|+.|++++|.....           ..+..+++|++|++++|....++. +.  .++
T Consensus       165 -----------~-~~~-l~~l~~L~~L~l~~n~l~~~-----------~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~  217 (308)
T 1h6u_A          165 -----------D-LTP-LANLSKLTTLKADDNKISDI-----------SPLASLPNLIEVHLKNNQISDVSP-LA--NTS  217 (308)
T ss_dssp             -----------C-CGG-GTTCTTCCEEECCSSCCCCC-----------GGGGGCTTCCEEECTTSCCCBCGG-GT--TCT
T ss_pred             -----------C-Chh-hcCCCCCCEEECCCCccCcC-----------hhhcCCCCCCEEEccCCccCcccc-cc--CCC
Confidence                       0 001 55667778888877654322           125567889999999988887774 33  689


Q ss_pred             CceEEEEecCCCCC
Q 002129          296 KLVTLKFKNCDMCT  309 (962)
Q Consensus       296 ~L~~L~L~~~~~~~  309 (962)
                      +|+.|++++|.+..
T Consensus       218 ~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          218 NLFIVTLTNQTITN  231 (308)
T ss_dssp             TCCEEEEEEEEEEC
T ss_pred             CCCEEEccCCeeec
Confidence            99999999998543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.59  E-value=1.6e-16  Score=172.31  Aligned_cols=104  Identities=16%  Similarity=0.121  Sum_probs=79.7

Q ss_pred             cC--CcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccc--cChhhhccCCccEEecCCCcchhccchhhhccCCCc
Q 002129           87 KL--QSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRT--LPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLH  162 (962)
Q Consensus        87 ~l--~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~--lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~  162 (962)
                      .+  +++++|++++|.+...+..+..+++|++|++++|.++.  +|..+..+++|++|++++|......|..++.+++|+
T Consensus        66 ~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~  145 (336)
T 2ast_B           66 RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV  145 (336)
T ss_dssp             HHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred             hhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence            55  78888888888888776667788888888888888873  677788888888888888765566777888888888


Q ss_pred             EEeccCCcccc--cccccccccccccccce
Q 002129          163 HLKNSNTKSLE--EMPVGIGRLTCLQTLCS  190 (962)
Q Consensus       163 ~L~l~~n~~~~--~lp~~~~~L~~L~~L~~  190 (962)
                      +|++++|..+.  .+|..++.+++|++|++
T Consensus       146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l  175 (336)
T 2ast_B          146 RLNLSGCSGFSEFALQTLLSSCSRLDELNL  175 (336)
T ss_dssp             EEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred             EEECCCCCCCCHHHHHHHHhcCCCCCEEcC
Confidence            88888883244  25555666777776644

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.58  E-value=6.9e-15  Score=156.80  Aligned_cols=227  Identities=12%  Similarity=0.064  Sum_probs=145.0

Q ss_pred             CccEEEecCCCCchhh-hh--hccCCCCcceEeecCCccccccCccc--cCCCCccEEEcccCCCcccCC----CCCCCc
Q 002129          691 SLKLLLVWGCSKLESI-AE--MLDNNTSLEKINISGCGNLQTLPSGL--HNLCQLQEISIASCGNLVSSP----EGGLPC  761 (962)
Q Consensus       691 ~L~~L~l~~~~~~~~~-~~--~~~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~L~~~~~l~~~~----~~~~~~  761 (962)
                      .++.+.+.++...... ..  .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|......+    .....+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            4666677666654321 11  12234567777777777777666666  677777777777774433332    112346


Q ss_pred             ccccccccccccccccCccccCCCcccceeecCCCCCCCC--CC---CCCCCCccceEeecCchhhhHHHHhcccccccc
Q 002129          762 AKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPS--LE---EDGLPTNLHVLLINGNMEIWKSMIERGRGFHRF  836 (962)
Q Consensus       762 ~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~--~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  836 (962)
                      ++|++|++++|......+..++.+++|++|++++|.....  ++   ..+.+++|++|++++|.+....... ...+..+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC-AALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH-HHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH-HHHHhcC
Confidence            6777777777776555556777778888888887753321  11   1134577888888887764322110 0234678


Q ss_pred             CccceeecccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcccccccccCCCcCeEeccCCCCCccCCCCCC
Q 002129          837 SSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGL  916 (962)
Q Consensus       837 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~  916 (962)
                      ++|++|++++|.. ....|....      .+..+++|++|++++ +.++.+|..+.  ++|++|++++| +++.+|....
T Consensus       224 ~~L~~L~Ls~N~l-~~~~p~~~~------~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~  292 (310)
T 4glp_A          224 VQPHSLDLSHNSL-RATVNPSAP------RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDE  292 (310)
T ss_dssp             CCCSSEECTTSCC-CCCCCSCCS------SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTS
T ss_pred             CCCCEEECCCCCC-CccchhhHH------hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCC-cCCCCchhhh
Confidence            9999999999742 222243221      122347999999998 57888987653  79999999995 5777765444


Q ss_pred             ccccceeeccCCh
Q 002129          917 PSSLLQLSINRCP  929 (962)
Q Consensus       917 ~~sL~~L~i~~c~  929 (962)
                      .++|+.|++++++
T Consensus       293 l~~L~~L~L~~N~  305 (310)
T 4glp_A          293 LPEVDNLTLDGNP  305 (310)
T ss_dssp             CCCCSCEECSSTT
T ss_pred             CCCccEEECcCCC
Confidence            5899999998886

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.57  E-value=3e-14  Score=146.62  Aligned_cols=173  Identities=20%  Similarity=0.216  Sum_probs=101.8

Q ss_pred             cccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhccchhhhccCCCcEEeccC
Q 002129           90 SLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSN  168 (962)
Q Consensus        90 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~  168 (962)
                      ..++++++++.++.+|..+.  .+|++|+|++|.++.++. .|+++++|++|++++|...+..|..+..+++|++|++++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            45566666666666666554  466777777777666543 466677777777776433333334466677777777777


Q ss_pred             Cccccccccc-ccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEee
Q 002129          169 TKSLEEMPVG-IGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWT  247 (962)
Q Consensus       169 n~~~~~lp~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  247 (962)
                      |. +..+|.. ++.+++|++|++..+                                                      
T Consensus        93 n~-l~~~~~~~~~~l~~L~~L~L~~N------------------------------------------------------  117 (251)
T 3m19_A           93 NQ-LASLPLGVFDHLTQLDKLYLGGN------------------------------------------------------  117 (251)
T ss_dssp             SC-CCCCCTTTTTTCTTCCEEECCSS------------------------------------------------------
T ss_pred             Cc-ccccChhHhcccCCCCEEEcCCC------------------------------------------------------
Confidence            66 4444432 455555555533211                                                      


Q ss_pred             cCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCC-CCCCCCCCCeEEEc
Q 002129          248 LYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALP-SVGQLPSLKHLTVR  326 (962)
Q Consensus       248 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~  326 (962)
                      .....         ....+..+++|+.|++++|....+|..... .+++|++|++++|.+....+ .+..+++|++|+++
T Consensus       118 ~l~~~---------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  187 (251)
T 3m19_A          118 QLKSL---------PSGVFDRLTKLKELRLNTNQLQSIPAGAFD-KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF  187 (251)
T ss_dssp             CCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cCCCc---------ChhHhccCCcccEEECcCCcCCccCHHHcC-cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence            10000         001122344555555666666666653222 57888888888888766555 57788888888888


Q ss_pred             CCC
Q 002129          327 GMS  329 (962)
Q Consensus       327 ~~~  329 (962)
                      +|+
T Consensus       188 ~N~  190 (251)
T 3m19_A          188 GNQ  190 (251)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.56  E-value=2.3e-16  Score=170.92  Aligned_cols=84  Identities=18%  Similarity=0.192  Sum_probs=43.4

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccc-cC-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVS-FP-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEI  602 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~-~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~  602 (962)
                      ++++.|++++|......+. +..+++|++|++++|..... ++ .+..+++|++|++++|......+..+  ..+++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l--~~~~~L~~  146 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL--AKNSNLVR  146 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH--TTCTTCSE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH--hcCCCCCE
Confidence            5677777776654444333 44566666666666542211 22 23445666666666665222223222  34556666


Q ss_pred             EEecCCCCC
Q 002129          603 LEISGCDSL  611 (962)
Q Consensus       603 L~l~~c~~l  611 (962)
                      |++++|..+
T Consensus       147 L~L~~~~~l  155 (336)
T 2ast_B          147 LNLSGCSGF  155 (336)
T ss_dssp             EECTTCBSC
T ss_pred             EECCCCCCC
Confidence            666655433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.52  E-value=3e-14  Score=149.78  Aligned_cols=168  Identities=19%  Similarity=0.271  Sum_probs=108.0

Q ss_pred             cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEec
Q 002129           87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKN  166 (962)
Q Consensus        87 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l  166 (962)
                      .+++|++|++++|.++.+| .++.+++|++|++++|.++.++. ++.+++|++|++++| .+..+| .++.+++|++|++
T Consensus        44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L  119 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSL  119 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEEC
T ss_pred             hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCCh-hhccCCCCCEEEC
Confidence            6677788888888777774 47777888888888888877766 777888888888874 455554 4777788888888


Q ss_pred             cCCcccccccccccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEe
Q 002129          167 SNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRW  246 (962)
Q Consensus       167 ~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  246 (962)
                      ++|. +..+ ..++.+++|+.|++..+                                                     
T Consensus       120 ~~n~-i~~~-~~l~~l~~L~~L~l~~n-----------------------------------------------------  144 (291)
T 1h6t_A          120 EHNG-ISDI-NGLVHLPQLESLYLGNN-----------------------------------------------------  144 (291)
T ss_dssp             TTSC-CCCC-GGGGGCTTCCEEECCSS-----------------------------------------------------
T ss_pred             CCCc-CCCC-hhhcCCCCCCEEEccCC-----------------------------------------------------
Confidence            8777 5554 24555556655543221                                                     


Q ss_pred             ecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEc
Q 002129          247 TLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVR  326 (962)
Q Consensus       247 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~  326 (962)
                       ....           +..+..+++|+.|++++|....++. +.  .+++|+.|++++|.+.. ++.+..+++|+.|+++
T Consensus       145 -~l~~-----------~~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~  208 (291)
T 1h6t_A          145 -KITD-----------ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDVLELF  208 (291)
T ss_dssp             -CCCC-----------CGGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEE
T ss_pred             -cCCc-----------chhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCcCCC-ChhhccCCCCCEEECc
Confidence             1000           0112233445555555555555544 22  47778888888776543 4567778888888887


Q ss_pred             CCC
Q 002129          327 GMS  329 (962)
Q Consensus       327 ~~~  329 (962)
                      +|+
T Consensus       209 ~n~  211 (291)
T 1h6t_A          209 SQE  211 (291)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            774

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.51  E-value=1.4e-15  Score=167.96  Aligned_cols=104  Identities=15%  Similarity=0.131  Sum_probs=57.2

Q ss_pred             cCCcccEEEecCCCCcc----cCccc-------cCCCcCcEEEcCCCcccc-----cChhhhccCCccEEecCCCcchhc
Q 002129           87 KLQSLRVFSLRGYRILE----LPDSV-------GDLRYLRYLNLSGTEIRT-----LPESVSKLYNLHSLLLEDCDRLEK  150 (962)
Q Consensus        87 ~l~~L~~L~L~~~~i~~----lp~~~-------~~L~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~~~~  150 (962)
                      .+++|++|+|++|.+..    +|..+       ..+++|++|+|++|.++.     +|..+..+++|++|++++|.....
T Consensus        58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~  137 (386)
T 2ca6_A           58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ  137 (386)
T ss_dssp             TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred             hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence            56666777776654432    23332       566667777777666664     555666666777777766543222


Q ss_pred             ----cchhhhcc---------CCCcEEeccCCccc-cccc---ccccccccccccce
Q 002129          151 ----LCADMGNL---------VKLHHLKNSNTKSL-EEMP---VGIGRLTCLQTLCS  190 (962)
Q Consensus       151 ----lp~~i~~L---------~~L~~L~l~~n~~~-~~lp---~~~~~L~~L~~L~~  190 (962)
                          ++..+..+         ++|++|++++|.+. ..+|   ..+..+++|++|++
T Consensus       138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L  194 (386)
T 2ca6_A          138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM  194 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEEC
T ss_pred             HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEEC
Confidence                22233333         66677777666622 2333   23445555555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.49  E-value=2e-13  Score=134.55  Aligned_cols=146  Identities=13%  Similarity=0.176  Sum_probs=118.4

Q ss_pred             CceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcc-cCccccCCC
Q 002129           34 RYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILE-LPDSVGDLR  112 (962)
Q Consensus        34 ~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-lp~~~~~L~  112 (962)
                      +.++++++.++.+..+   +.+..+++|++|.+.++.        ...++.+..+++|++|++++|.++. .|..|+.++
T Consensus        44 ~~L~~L~l~~n~i~~l---~~l~~l~~L~~L~l~~n~--------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  112 (197)
T 4ezg_A           44 NSLTYITLANINVTDL---TGIEYAHNIKDLTINNIH--------ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT  112 (197)
T ss_dssp             HTCCEEEEESSCCSCC---TTGGGCTTCSEEEEESCC--------CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred             CCccEEeccCCCccCh---HHHhcCCCCCEEEccCCC--------CCcchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence            5788999998877643   357788899999887653        2334455689999999999999985 678899999


Q ss_pred             cCcEEEcCCCcccc-cChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCccccccccccccccccccccee
Q 002129          113 YLRYLNLSGTEIRT-LPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSF  191 (962)
Q Consensus       113 ~L~~L~Ls~n~i~~-lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~  191 (962)
                      +|++|++++|.++. .|..++.+++|++|++++|..++.+| .++.+++|++|++++|. +..++ .+..+++|++|++.
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~  189 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAF  189 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEEC
T ss_pred             CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEee
Confidence            99999999999985 57779999999999999976577787 78999999999999998 67776 78888888888765


Q ss_pred             ee
Q 002129          192 VV  193 (962)
Q Consensus       192 ~~  193 (962)
                      .+
T Consensus       190 ~N  191 (197)
T 4ezg_A          190 SQ  191 (197)
T ss_dssp             BC
T ss_pred             Cc
Confidence            43

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.48  E-value=1.6e-13  Score=141.22  Aligned_cols=153  Identities=20%  Similarity=0.173  Sum_probs=107.9

Q ss_pred             ccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCC-CCCccccccc
Q 002129          689 PPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLAML  767 (962)
Q Consensus       689 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~~L  767 (962)
                      |++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|++|++++| .++.+|.. +..+++|++|
T Consensus        34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  112 (251)
T 3m19_A           34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKL  112 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEE
Confidence            368899999999888887888889999999999998887777777888899999999988 45555543 4567888888


Q ss_pred             ccccccccccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhhhHHHHhccccccccCccceeecc
Q 002129          768 AIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIM  845 (962)
Q Consensus       768 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  845 (962)
                      ++++|......+..+..+++|++|++++| .+..++..  +.+++|++|++++|.+.....    ..+..+++|+.|+++
T Consensus       113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~  187 (251)
T 3m19_A          113 YLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH----GAFDRLGKLQTITLF  187 (251)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECC
T ss_pred             EcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCH----HHHhCCCCCCEEEee
Confidence            88888744333345678888888888888 55555542  344566666666665443322    234555555555555


Q ss_pred             cC
Q 002129          846 NC  847 (962)
Q Consensus       846 ~~  847 (962)
                      +|
T Consensus       188 ~N  189 (251)
T 3m19_A          188 GN  189 (251)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.46  E-value=8.6e-15  Score=159.78  Aligned_cols=107  Identities=10%  Similarity=-0.004  Sum_probs=58.5

Q ss_pred             cCccEEEecCCCCchhhhh----hccCC-CCcceEeecCCccccc----cCccccC-CCCccEEEcccCCCcccCCC---
Q 002129          690 PSLKLLLVWGCSKLESIAE----MLDNN-TSLEKINISGCGNLQT----LPSGLHN-LCQLQEISIASCGNLVSSPE---  756 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~l~~~~~~~~----~~~~l~~-l~~L~~L~L~~~~~l~~~~~---  756 (962)
                      ++|++|++++|.+.+..+.    .+..+ ++|++|++++|.+...    ++..+.. .++|++|++++| .++..+.   
T Consensus       167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l  245 (362)
T 3goz_A          167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENL  245 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHH
T ss_pred             ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHH
Confidence            3667777777766554432    33344 4777777777665442    3334444 346777777776 3333221   


Q ss_pred             --CCCCcccccccccccccc-------cccCccccCCCcccceeecCCCC
Q 002129          757 --GGLPCAKLAMLAIYNCKR-------LEALPKGLHNLKSLQELRIGKGV  797 (962)
Q Consensus       757 --~~~~~~~L~~L~l~~c~~-------l~~~~~~~~~l~~L~~L~l~~~~  797 (962)
                        ....+++|+.|++++|..       ...++..+..+++|+.|++++|+
T Consensus       246 ~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          246 KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence              123345666666666651       12233345566666666666663

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.45  E-value=5e-13  Score=133.13  Aligned_cols=81  Identities=22%  Similarity=0.360  Sum_probs=44.7

Q ss_pred             cEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChh-hhccCCccEEecCCCcchhccch-hhhccCCCcEEeccCC
Q 002129           92 RVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCA-DMGNLVKLHHLKNSNT  169 (962)
Q Consensus        92 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~n  169 (962)
                      +.++++++.++.+|..+  ..+|++|++++|.++.+|.. ++.+++|++|++++| .+..+|. .+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence            34555555666555444  23566666666666655543 556666666666663 3334443 3456666666666666


Q ss_pred             ccccccc
Q 002129          170 KSLEEMP  176 (962)
Q Consensus       170 ~~~~~lp  176 (962)
                      . +..+|
T Consensus        87 ~-l~~~~   92 (208)
T 2o6s_A           87 Q-LQSLP   92 (208)
T ss_dssp             C-CCCCC
T ss_pred             c-CCccC
Confidence            5 44443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.45  E-value=1.9e-13  Score=137.02  Aligned_cols=129  Identities=26%  Similarity=0.298  Sum_probs=106.4

Q ss_pred             CceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCccc-CccccCCCcCcEEEcCCCcccccChh-hhccC
Q 002129           59 QHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTLPES-VSKLY  135 (962)
Q Consensus        59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~  135 (962)
                      ++++.|.+.++.       ...+++..+ .+++|++|+|++|.++.+ |..|.++++|++|+|++|.|+.+|.. |..++
T Consensus        32 ~~l~~L~l~~n~-------i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~  104 (220)
T 2v9t_B           32 ETITEIRLEQNT-------IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF  104 (220)
T ss_dssp             TTCCEEECCSSC-------CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cCCCEEECCCCc-------CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC
Confidence            578999887654       456666666 899999999999999977 78899999999999999999999866 78999


Q ss_pred             CccEEecCCCcchhccchhhhccCCCcEEeccCCccccccccc-ccccccccccceeeecC
Q 002129          136 NLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTLCSFVVGK  195 (962)
Q Consensus       136 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~~~~~~~  195 (962)
                      +|++|++++|......|..|..+++|++|++++|. +..+|.+ +..+++|++|++..+..
T Consensus       105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence            99999999965444446779999999999999998 6777664 88899999987755443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.44  E-value=8.2e-13  Score=132.33  Aligned_cols=94  Identities=22%  Similarity=0.309  Sum_probs=64.8

Q ss_pred             cEEEecCCCCcccCccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCc
Q 002129           92 RVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTK  170 (962)
Q Consensus        92 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~  170 (962)
                      +.+++++++++.+|..+.  .+|++|+|++|.|+.+|. .|..+++|++|++++|......|..|..+++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            567777777777777655  577888888888877765 47778888888888754444446677888888888888877


Q ss_pred             cccccccc-cccccccccc
Q 002129          171 SLEEMPVG-IGRLTCLQTL  188 (962)
Q Consensus       171 ~~~~lp~~-~~~L~~L~~L  188 (962)
                       +..+|.+ ++.+++|++|
T Consensus        92 -l~~l~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           92 -ITELPKSLFEGLFSLQLL  109 (220)
T ss_dssp             -CCCCCTTTTTTCTTCCEE
T ss_pred             -CCccCHhHccCCCCCCEE
Confidence             5556544 3444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.44  E-value=1.1e-14  Score=160.64  Aligned_cols=93  Identities=18%  Similarity=0.160  Sum_probs=49.5

Q ss_pred             ccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCC-----CCccccCCCCCCceEEEEecCC
Q 002129          232 QLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMK-----FPTWLGDSSFSKLVTLKFKNCD  306 (962)
Q Consensus       232 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~~~  306 (962)
                      .+..+++|+.|++++|..+..     ........+..+++|++|++++|....     +|.++....+++|++|+|++|.
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~-----g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHL-----GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHH-----HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             HhhcCCCccEEECcCCCCCcH-----HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            344555555565555532100     001122344455666666666665443     2344321236777777777777


Q ss_pred             CCC----CCC-CC-CCCCCCCeEEEcCCC
Q 002129          307 MCT----ALP-SV-GQLPSLKHLTVRGMS  329 (962)
Q Consensus       307 ~~~----~l~-~l-~~l~~L~~L~L~~~~  329 (962)
                      +..    .++ .+ ..+++|++|++++|.
T Consensus       286 i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          286 IELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            655    233 33 456778888887775

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.43  E-value=1.8e-13  Score=157.87  Aligned_cols=168  Identities=19%  Similarity=0.276  Sum_probs=113.9

Q ss_pred             cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEec
Q 002129           87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKN  166 (962)
Q Consensus        87 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l  166 (962)
                      .+++|+.|++++|.+..+| .++.+++|++|+|++|.++.+|. +..+++|+.|+|++| .+..+| .++.+++|++|++
T Consensus        41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEEC
T ss_pred             cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEe
Confidence            6778888888888888775 57888888888888888887766 788888888888885 455555 6788888888888


Q ss_pred             cCCcccccccccccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEe
Q 002129          167 SNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRW  246 (962)
Q Consensus       167 ~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  246 (962)
                      ++|. +..+| .++.+++|+.|++..+                                                     
T Consensus       117 s~N~-l~~l~-~l~~l~~L~~L~Ls~N-----------------------------------------------------  141 (605)
T 1m9s_A          117 EHNG-ISDIN-GLVHLPQLESLYLGNN-----------------------------------------------------  141 (605)
T ss_dssp             TTSC-CCCCG-GGGGCTTCSEEECCSS-----------------------------------------------------
T ss_pred             cCCC-CCCCc-cccCCCccCEEECCCC-----------------------------------------------------
Confidence            8887 55543 3666666666643221                                                     


Q ss_pred             ecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEc
Q 002129          247 TLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVR  326 (962)
Q Consensus       247 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~  326 (962)
                       ....           +..+..+++|+.|++++|....++. +.  .+++|+.|+|++|.+.. ++.+..+++|+.|+|+
T Consensus       142 -~l~~-----------l~~l~~l~~L~~L~Ls~N~l~~~~~-l~--~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~  205 (605)
T 1m9s_A          142 -KITD-----------ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDVLELF  205 (605)
T ss_dssp             -CCCC-----------CGGGGSCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECC
T ss_pred             -ccCC-----------chhhcccCCCCEEECcCCcCCCchh-hc--cCCCCCEEECcCCCCCC-ChHHccCCCCCEEEcc
Confidence             1000           0122334455555555555555544 32  57788888888887544 4667788888888888


Q ss_pred             CCC
Q 002129          327 GMS  329 (962)
Q Consensus       327 ~~~  329 (962)
                      +|+
T Consensus       206 ~N~  208 (605)
T 1m9s_A          206 SQE  208 (605)
T ss_dssp             SEE
T ss_pred             CCc
Confidence            775

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.43  E-value=4.5e-13  Score=152.59  Aligned_cols=188  Identities=23%  Similarity=0.294  Sum_probs=116.7

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE  604 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  604 (962)
                      .+|+.|++++|.. +.+|..+  +++|++|++++| .++.+|  ..+++|++|++++|. ++.+|. +  ..  +|++|+
T Consensus        59 ~~L~~L~Ls~n~L-~~lp~~l--~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N~-l~~ip~-l--~~--~L~~L~  126 (571)
T 3cvr_A           59 NQFSELQLNRLNL-SSLPDNL--PPQITVLEITQN-ALISLP--ELPASLEYLDACDNR-LSTLPE-L--PA--SLKHLD  126 (571)
T ss_dssp             TTCSEEECCSSCC-SCCCSCC--CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC-C--CT--TCCEEE
T ss_pred             CCccEEEeCCCCC-CccCHhH--cCCCCEEECcCC-CCcccc--cccCCCCEEEccCCC-CCCcch-h--hc--CCCEEE
Confidence            4788888888764 4477655  378889998886 455677  567888888888886 555766 3  22  788888


Q ss_pred             ecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccc
Q 002129          605 ISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE  684 (962)
Q Consensus       605 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~  684 (962)
                      +++| .++.+|.  .+++|+.|++++|. ++.++.                                             
T Consensus       127 Ls~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~---------------------------------------------  157 (571)
T 3cvr_A          127 VDNN-QLTMLPE--LPALLEYINADNNQ-LTMLPE---------------------------------------------  157 (571)
T ss_dssp             CCSS-CCSCCCC--CCTTCCEEECCSSC-CSCCCC---------------------------------------------
T ss_pred             CCCC-cCCCCCC--cCccccEEeCCCCc-cCcCCC---------------------------------------------
Confidence            8884 4555655  45666666666653 222220                                             


Q ss_pred             cCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCc-------cEEEcccCCCcccCCCC
Q 002129          685 VGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQL-------QEISIASCGNLVSSPEG  757 (962)
Q Consensus       685 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-------~~L~L~~~~~l~~~~~~  757 (962)
                         .+++|++|++++|.+.+ +|. +.  ++|+.|++++|.+. .+|. +..  +|       +.|++++| .++.+|..
T Consensus       158 ---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~  225 (571)
T 3cvr_A          158 ---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCREN-RITHIPEN  225 (571)
T ss_dssp             ---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSS-CCCCCCGG
T ss_pred             ---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCC-cceecCHH
Confidence               01566777777766544 444 43  66777777666544 4554 433  45       66666666 45566665


Q ss_pred             CCCcccccccccccccccccCccccCCC
Q 002129          758 GLPCAKLAMLAIYNCKRLEALPKGLHNL  785 (962)
Q Consensus       758 ~~~~~~L~~L~l~~c~~l~~~~~~~~~l  785 (962)
                      .+.+++|+.|++++|+..+.+|..+..+
T Consensus       226 l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          226 ILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             GGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             HhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            5556666666666666555555544443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.42  E-value=9.4e-13  Score=138.33  Aligned_cols=176  Identities=20%  Similarity=0.275  Sum_probs=103.2

Q ss_pred             ccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhcc
Q 002129           55 LYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKL  134 (962)
Q Consensus        55 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L  134 (962)
                      ...+++|+.|.+.++.       ...+ +.+..+++|++|++++|.++.++. +..+++|++|++++|.++.+|. ++.+
T Consensus        42 ~~~l~~L~~L~l~~~~-------i~~~-~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l  111 (291)
T 1h6t_A           42 QNELNSIDQIIANNSD-------IKSV-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDL  111 (291)
T ss_dssp             HHHHHTCCEEECTTSC-------CCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTC
T ss_pred             hhhcCcccEEEccCCC-------cccC-hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccC
Confidence            3455666666665432       1222 334466777777777777776655 6777777777777777766654 6777


Q ss_pred             CCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccccceeeecCCCCCCccccccccccccee
Q 002129          135 YNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTL  214 (962)
Q Consensus       135 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l  214 (962)
                      ++|++|++++| .+..+ ..++.+++|++|++++|. +..+ ..++.+++|++|++..+...                  
T Consensus       112 ~~L~~L~L~~n-~i~~~-~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~------------------  169 (291)
T 1h6t_A          112 KKLKSLSLEHN-GISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQIS------------------  169 (291)
T ss_dssp             TTCCEEECTTS-CCCCC-GGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCC------------------
T ss_pred             CCCCEEECCCC-cCCCC-hhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccc------------------
Confidence            77777777774 34444 356677777777777776 5554 34666666666644322110                  


Q ss_pred             EEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCc
Q 002129          215 CISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPT  287 (962)
Q Consensus       215 ~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~  287 (962)
                                  ... . +..+++|+.|++++|....           +..+..+++|+.|++++|.....|.
T Consensus       170 ------------~~~-~-l~~l~~L~~L~L~~N~i~~-----------l~~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          170 ------------DIV-P-LAGLTKLQNLYLSKNHISD-----------LRALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             ------------CCG-G-GTTCTTCCEEECCSSCCCB-----------CGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred             ------------cch-h-hcCCCccCEEECCCCcCCC-----------ChhhccCCCCCEEECcCCcccCCcc
Confidence                        000 0 4455666666666664322           1235556777777777776555443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.42  E-value=3.1e-13  Score=133.13  Aligned_cols=148  Identities=14%  Similarity=0.141  Sum_probs=111.6

Q ss_pred             cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAI  769 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l  769 (962)
                      ++|++|++++|.+. .++ .+..+++|++|++++|. ...+ ..+..+++|++|++++|......+..+..+++|++|++
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            68999999998766 445 58889999999999984 3333 46888999999999998555556777777889999999


Q ss_pred             ccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccceeecccC
Q 002129          770 YNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNC  847 (962)
Q Consensus       770 ~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  847 (962)
                      ++|......|..+..+++|++|++++|..++.++....+++|++|++++|.+...      ..+..+++|++|++++|
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~------~~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY------RGIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCC------TTGGGCSSCCEEEECBC
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcCh------HHhccCCCCCEEEeeCc
Confidence            9998777777888899999999999997677776555566677777776665442      13455666666666664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.42  E-value=6.8e-14  Score=144.53  Aligned_cols=56  Identities=21%  Similarity=0.323  Sum_probs=35.4

Q ss_pred             CCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCC
Q 002129          270 TNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMS  329 (962)
Q Consensus       270 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~  329 (962)
                      ++|+.|++++|....+| .+.  .+++|+.|++++|.+.+. +.+..+++|+.|++++|+
T Consensus       128 ~~L~~L~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          128 KNLEILSIRNNKLKSIV-MLG--FLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             TTCCEEECTTSCCCBCG-GGG--GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred             ccccEEECCCCcCCCCh-HHc--cCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence            33444444444444443 222  467788888888776554 667788888888888775

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.41  E-value=3.1e-14  Score=155.32  Aligned_cols=216  Identities=12%  Similarity=0.030  Sum_probs=120.7

Q ss_pred             cccccc-cCCcccEEEecCCCCcccC-----ccccCCC-cCcEEEcCCCccccc-Chhhhcc-----CCccEEecCCCcc
Q 002129           81 MLPKLL-KLQSLRVFSLRGYRILELP-----DSVGDLR-YLRYLNLSGTEIRTL-PESVSKL-----YNLHSLLLEDCDR  147 (962)
Q Consensus        81 ~~~~~~-~l~~L~~L~L~~~~i~~lp-----~~~~~L~-~L~~L~Ls~n~i~~l-p~~i~~L-----~~L~~L~L~~~~~  147 (962)
                      .++.+. ..++|++|+|++|.++..+     ..+..++ +|++|+|++|.++.. +..+..+     ++|++|++++|..
T Consensus        13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l   92 (362)
T 3goz_A           13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL   92 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence            344455 4555888888888887665     5677777 788888888888765 4456665     7888888888654


Q ss_pred             hhccchhhh----cc-CCCcEEeccCCcccccccc-cccc-----cccccccceeeecCCCCCCcccccccccccceeEE
Q 002129          148 LEKLCADMG----NL-VKLHHLKNSNTKSLEEMPV-GIGR-----LTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCI  216 (962)
Q Consensus       148 ~~~lp~~i~----~L-~~L~~L~l~~n~~~~~lp~-~~~~-----L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~  216 (962)
                      ....+..+.    .+ ++|++|++++|. ++..+. .+..     .++|++|++..+....                   
T Consensus        93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-------------------  152 (362)
T 3goz_A           93 SYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGI-------------------  152 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG-------------------
T ss_pred             ChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCH-------------------
Confidence            444444443    33 788888888887 444432 2322     2466666443211100                   


Q ss_pred             ecCCCCcchhhhhhhccCCCC-CCCcEEEEeecCCCCchhhhhHhhhcccCCCC-CCcceEEEeccCCCC-----CCccc
Q 002129          217 SNLENVKHIVDAEDAQLDRKE-NLKELWLRWTLYGSYSREAETEMGVLDMLKPH-TNLEQFCIKGYGGMK-----FPTWL  289 (962)
Q Consensus       217 ~~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~L~~L~l~~~~~~~-----~p~~~  289 (962)
                             .........+...+ +|++|++++|........     .....+... ++|++|++++|....     ++..+
T Consensus       153 -------~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~-----~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l  220 (362)
T 3goz_A          153 -------KSSDELIQILAAIPANVNSLNLRGNNLASKNCA-----ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF  220 (362)
T ss_dssp             -------SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH-----HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             -------HHHHHHHHHHhcCCccccEeeecCCCCchhhHH-----HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence                   00111222233333 677777776653222211     111223333 367777777766544     33333


Q ss_pred             cCCCCCCceEEEEecCCCCCCCC-----CCCCCCCCCeEEEcCCC
Q 002129          290 GDSSFSKLVTLKFKNCDMCTALP-----SVGQLPSLKHLTVRGMS  329 (962)
Q Consensus       290 ~~~~l~~L~~L~L~~~~~~~~l~-----~l~~l~~L~~L~L~~~~  329 (962)
                      .. ..++|++|++++|.+....+     .+..+++|++|++++|.
T Consensus       221 ~~-~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          221 SS-IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             HH-SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             hc-CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            21 13467777777776544321     34556667777776663

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.41  E-value=9e-13  Score=131.23  Aligned_cols=128  Identities=20%  Similarity=0.183  Sum_probs=89.1

Q ss_pred             cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCC-CCCcccccccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLAMLA  768 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~~L~  768 (962)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++| .++.++.. +..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEE
Confidence            68899999998877666677888889999999888776555556778888888888888 45565554 34577888888


Q ss_pred             cccccccccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCc
Q 002129          769 IYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGN  819 (962)
Q Consensus       769 l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~  819 (962)
                      +++|......+..+..+++|++|++++| .+..++..  ..+++|++|++++|
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence            8888744433445677888888888877 44444431  22344444444444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.41  E-value=8.4e-13  Score=133.28  Aligned_cols=145  Identities=20%  Similarity=0.286  Sum_probs=111.4

Q ss_pred             eEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccCc-cccCCCcC
Q 002129           37 RHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPD-SVGDLRYL  114 (962)
Q Consensus        37 r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~-~~~~L~~L  114 (962)
                      +.+++.++.+..+.  ..+  .++|+.|.+.++.       ...+++..+ .+++|++|+|++|.++.+|. .|..+++|
T Consensus        22 ~~v~c~~~~l~~ip--~~~--~~~L~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L   90 (229)
T 3e6j_A           22 TTVDCRSKRHASVP--AGI--PTNAQILYLHDNQ-------ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL   90 (229)
T ss_dssp             TEEECTTSCCSSCC--SCC--CTTCSEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEeEccCCCcCccC--CCC--CCCCCEEEcCCCc-------cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc
Confidence            34555444443322  222  3788999887654       345555555 89999999999999998874 57899999


Q ss_pred             cEEEcCCCcccccChh-hhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCccccccccc-ccccccccccceee
Q 002129          115 RYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTLCSFV  192 (962)
Q Consensus       115 ~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~~~~  192 (962)
                      ++|+|++|+|+.+|.. +..+++|++|++++| .+..+|..+..+++|++|++++|. +..+|.. +..+++|+.|++..
T Consensus        91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A           91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeC
Confidence            9999999999988765 789999999999984 577899999999999999999998 7777754 88888998887654


Q ss_pred             ec
Q 002129          193 VG  194 (962)
Q Consensus       193 ~~  194 (962)
                      +.
T Consensus       169 N~  170 (229)
T 3e6j_A          169 NP  170 (229)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.41  E-value=9.2e-13  Score=150.03  Aligned_cols=177  Identities=16%  Similarity=0.140  Sum_probs=109.3

Q ss_pred             cccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCC
Q 002129           90 SLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNT  169 (962)
Q Consensus        90 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n  169 (962)
                      +|++|+|++|.++.+|..+.  ++|++|+|++|.|+.+|   +.+++|++|++++| .+..+|. +..  +|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence            77777777777777776553  67777777777777777   44677777777774 4555666 544  7777777777


Q ss_pred             cccccccccccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecC
Q 002129          170 KSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLY  249 (962)
Q Consensus       170 ~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  249 (962)
                      . +..+|.   .+++|+.|++..+...                        .       ++.   .+++|+.|++++|..
T Consensus       131 ~-l~~lp~---~l~~L~~L~Ls~N~l~------------------------~-------lp~---~l~~L~~L~Ls~N~L  172 (571)
T 3cvr_A          131 Q-LTMLPE---LPALLEYINADNNQLT------------------------M-------LPE---LPTSLEVLSVRNNQL  172 (571)
T ss_dssp             C-CSCCCC---CCTTCCEEECCSSCCS------------------------C-------CCC---CCTTCCEEECCSSCC
T ss_pred             c-CCCCCC---cCccccEEeCCCCccC------------------------c-------CCC---cCCCcCEEECCCCCC
Confidence            7 555665   4566666644322110                        0       000   234566666666543


Q ss_pred             CCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCCCc-------eEEEEecCCCCCCCCCCCCCCCCCe
Q 002129          250 GSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKL-------VTLKFKNCDMCTALPSVGQLPSLKH  322 (962)
Q Consensus       250 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~~~~~~~l~~l~~l~~L~~  322 (962)
                      ...+           .+.  ++|+.|++++|....+|. +..    +|       +.|++++|.+....+.+..+++|+.
T Consensus       173 ~~lp-----------~l~--~~L~~L~Ls~N~L~~lp~-~~~----~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~  234 (571)
T 3cvr_A          173 TFLP-----------ELP--ESLEALDVSTNLLESLPA-VPV----RNHHSEETEIFFRCRENRITHIPENILSLDPTCT  234 (571)
T ss_dssp             SCCC-----------CCC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGGGGGSCTTEE
T ss_pred             CCcc-----------hhh--CCCCEEECcCCCCCchhh-HHH----hhhcccccceEEecCCCcceecCHHHhcCCCCCE
Confidence            2211           122  677777777777777776 431    55       8888888876643334666788888


Q ss_pred             EEEcCCCCc
Q 002129          323 LTVRGMSKV  331 (962)
Q Consensus       323 L~L~~~~~~  331 (962)
                      |++++|+..
T Consensus       235 L~L~~N~l~  243 (571)
T 3cvr_A          235 IILEDNPLS  243 (571)
T ss_dssp             EECCSSSCC
T ss_pred             EEeeCCcCC
Confidence            888777643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.40  E-value=9.1e-13  Score=132.03  Aligned_cols=147  Identities=12%  Similarity=0.122  Sum_probs=112.6

Q ss_pred             eEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCccc-ccccc-cCCcccEEEecCCCCcccCc-cccCCCc
Q 002129           37 RHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSM-LPKLL-KLQSLRVFSLRGYRILELPD-SVGDLRY  113 (962)
Q Consensus        37 r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~~~-~l~~L~~L~L~~~~i~~lp~-~~~~L~~  113 (962)
                      +++.+.++.+..+.  ..+  .+.++.|.+..+.       ...+ +..++ .+++|++|+|++|.|+.++. .|.++++
T Consensus        14 ~~l~~s~n~l~~iP--~~~--~~~~~~L~L~~N~-------l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~   82 (220)
T 2v70_A           14 TTVDCSNQKLNKIP--EHI--PQYTAELRLNNNE-------FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG   82 (220)
T ss_dssp             TEEECCSSCCSSCC--SCC--CTTCSEEECCSSC-------CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CEeEeCCCCcccCc--cCC--CCCCCEEEcCCCc-------CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC
Confidence            46777776655432  222  2356788876653       3444 34555 99999999999999998754 7999999


Q ss_pred             CcEEEcCCCcccccChh-hhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccc-ccccccccccccccee
Q 002129          114 LRYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEM-PVGIGRLTCLQTLCSF  191 (962)
Q Consensus       114 L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~l-p~~~~~L~~L~~L~~~  191 (962)
                      |++|+|++|.++.+|.. |+.+++|++|++++|...+..|..|..+++|++|++++|. +..+ |..++.+++|++|++.
T Consensus        83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~  161 (220)
T 2v70_A           83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLL  161 (220)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEec
Confidence            99999999999988754 8999999999999965445557789999999999999998 5555 6679999999999776


Q ss_pred             eecC
Q 002129          192 VVGK  195 (962)
Q Consensus       192 ~~~~  195 (962)
                      .+..
T Consensus       162 ~N~l  165 (220)
T 2v70_A          162 ANPF  165 (220)
T ss_dssp             SCCE
T ss_pred             CcCC
Confidence            5443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.38  E-value=2.1e-12  Score=130.38  Aligned_cols=132  Identities=17%  Similarity=0.201  Sum_probs=114.4

Q ss_pred             ccCCceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccCc-cc
Q 002129           31 RFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPD-SV  108 (962)
Q Consensus        31 ~~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~-~~  108 (962)
                      .++..+++|.+.++.+.... ...+..+++|+.|.+.++.       ...+++..+ .+++|++|+|++|.++.+|. .|
T Consensus        37 ~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~-------l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  108 (229)
T 3e6j_A           37 GIPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQ-------LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF  108 (229)
T ss_dssp             CCCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCC-------CCCcChhhcccCCCcCEEECCCCcCCccChhHh
Confidence            35678999999999887653 4567889999999998764       467777777 99999999999999998865 47


Q ss_pred             cCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccc-hhhhccCCCcEEeccCCcc
Q 002129          109 GDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLC-ADMGNLVKLHHLKNSNTKS  171 (962)
Q Consensus       109 ~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~n~~  171 (962)
                      ..+++|++|+|++|+++.+|..+..+++|++|++++| .+..+| ..+..+++|++|++++|.+
T Consensus       109 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          109 DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             TTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             CcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            9999999999999999999999999999999999995 566676 4589999999999999983

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.37  E-value=1.3e-12  Score=124.97  Aligned_cols=103  Identities=23%  Similarity=0.244  Sum_probs=53.0

Q ss_pred             cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccc-cChhhhccCCccEEecCCCcchhccc--hhhhccCCCcE
Q 002129           87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRT-LPESVSKLYNLHSLLLEDCDRLEKLC--ADMGNLVKLHH  163 (962)
Q Consensus        87 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~-lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~  163 (962)
                      .+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.+++|++|++++| .+..+|  ..++.+++|++
T Consensus        47 ~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~  124 (168)
T 2ell_A           47 EFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKS  124 (168)
T ss_dssp             GGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCE
T ss_pred             hCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCE
Confidence            555555555555555544 445555555555555555554 4444445555555555553 333333  34555555555


Q ss_pred             EeccCCcccccccc----cccccccccccceee
Q 002129          164 LKNSNTKSLEEMPV----GIGRLTCLQTLCSFV  192 (962)
Q Consensus       164 L~l~~n~~~~~lp~----~~~~L~~L~~L~~~~  192 (962)
                      |++++|. +..+|.    .+..+++|++|++..
T Consensus       125 L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A          125 LDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             EECCSSG-GGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             EEeeCCc-CcchHHHHHHHHHhCccCcEecCCC
Confidence            5555555 444443    355555555554443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.37  E-value=1.8e-12  Score=129.81  Aligned_cols=135  Identities=15%  Similarity=0.117  Sum_probs=113.1

Q ss_pred             ccCCceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccCc-cc
Q 002129           31 RFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPD-SV  108 (962)
Q Consensus        31 ~~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~-~~  108 (962)
                      .++..+++|.+.++.+........+..+++|++|.+.++.       ...+++..+ ++++|++|+|++|.++.+|. .|
T Consensus        29 ~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-------i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  101 (220)
T 2v70_A           29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-------ITDIEEGAFEGASGVNEILLTSNRLENVQHKMF  101 (220)
T ss_dssp             CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGG
T ss_pred             CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-------CCEECHHHhCCCCCCCEEECCCCccCccCHhHh
Confidence            3456789999999988765433457889999999987764       456666556 99999999999999998864 58


Q ss_pred             cCCCcCcEEEcCCCccccc-ChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCccc
Q 002129          109 GDLRYLRYLNLSGTEIRTL-PESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSL  172 (962)
Q Consensus       109 ~~L~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~  172 (962)
                      ..+++|++|+|++|.|+.+ |..|..+++|++|++++|...+..|..|..+++|++|++++|.+.
T Consensus       102 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          102 KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            9999999999999999988 567999999999999996544444788999999999999999843

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.37  E-value=1e-12  Score=122.90  Aligned_cols=124  Identities=17%  Similarity=0.135  Sum_probs=98.2

Q ss_pred             CCceeEEeeccccCCCCCCCC-cccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccc-cChhhhccC
Q 002129           58 IQHLRTFLPVILSNSKPGYLA-PSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRT-LPESVSKLY  135 (962)
Q Consensus        58 ~~~Lr~L~l~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~-lp~~i~~L~  135 (962)
                      .++|+.|.+.++.      +. ..+|+.+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.++
T Consensus        16 ~~~l~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~   88 (149)
T 2je0_A           16 PSDVKELVLDNSR------SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP   88 (149)
T ss_dssp             GGGCSEEECTTCB------CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred             CccCeEEEccCCc------CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence            4677888776653      12 24555444889999999999999888 778999999999999999987 777788899


Q ss_pred             CccEEecCCCcchhccc--hhhhccCCCcEEeccCCcccccccc----cccccccccccce
Q 002129          136 NLHSLLLEDCDRLEKLC--ADMGNLVKLHHLKNSNTKSLEEMPV----GIGRLTCLQTLCS  190 (962)
Q Consensus       136 ~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~n~~~~~lp~----~~~~L~~L~~L~~  190 (962)
                      +|++|++++|. +..+|  ..++.+++|++|++++|. +..+|.    .++.+++|+.|++
T Consensus        89 ~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           89 NLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             TCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence            99999999954 55554  778999999999999998 666665    5888888888864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.36  E-value=2.2e-12  Score=148.91  Aligned_cols=77  Identities=10%  Similarity=0.128  Sum_probs=40.9

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE  604 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  604 (962)
                      ++|+.|++++|.. ..++ .+..+++|+.|+|++|. +..++++..+++|+.|++++|. +..++. +  ..+++|++|+
T Consensus        43 ~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~-l--~~l~~L~~L~  115 (605)
T 1m9s_A           43 NSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGNK-LTDIKPLTNLKNLGWLFLDENK-IKDLSS-L--KDLKKLKSLS  115 (605)
T ss_dssp             TTCCCCBCTTCCC-CCCT-TGGGCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSC-CCCCTT-S--TTCTTCCEEE
T ss_pred             CCCCEEECcCCCC-CCCh-HHccCCCCCEEEeeCCC-CCCChhhccCCCCCEEECcCCC-CCCChh-h--ccCCCCCEEE
Confidence            5666666666553 3333 35556666666666643 3334445555666666666654 334431 1  4555566666


Q ss_pred             ecCC
Q 002129          605 ISGC  608 (962)
Q Consensus       605 l~~c  608 (962)
                      +++|
T Consensus       116 Ls~N  119 (605)
T 1m9s_A          116 LEHN  119 (605)
T ss_dssp             CTTS
T ss_pred             ecCC
Confidence            5553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.35  E-value=2e-12  Score=123.65  Aligned_cols=138  Identities=25%  Similarity=0.264  Sum_probs=112.4

Q ss_pred             ccCCceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcc-cCcccc
Q 002129           31 RFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILE-LPDSVG  109 (962)
Q Consensus        31 ~~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-lp~~~~  109 (962)
                      ..++.+++|.+.++.+........+..+++|+.|.+.++.       ...+ +.+..+++|++|++++|.++. +|..+.
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-------l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   92 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-------LISV-SNLPKLPKLKKLELSENRIFGGLDMLAE   92 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-------CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-------CCCh-hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence            4568899999999887621223446788999999987764       2333 445599999999999999997 777788


Q ss_pred             CCCcCcEEEcCCCcccccC--hhhhccCCccEEecCCCcchhccch----hhhccCCCcEEeccCCccccccccc
Q 002129          110 DLRYLRYLNLSGTEIRTLP--ESVSKLYNLHSLLLEDCDRLEKLCA----DMGNLVKLHHLKNSNTKSLEEMPVG  178 (962)
Q Consensus       110 ~L~~L~~L~Ls~n~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~----~i~~L~~L~~L~l~~n~~~~~lp~~  178 (962)
                      .+++|++|++++|.++.+|  ..++.+++|++|++++| .+..+|.    .+..+++|++|++++|. ..++|.+
T Consensus        93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~  165 (168)
T 2ell_A           93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS  165 (168)
T ss_dssp             HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred             hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence            8999999999999999987  67999999999999995 5666665    78999999999999998 7777754

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.35  E-value=1.9e-12  Score=124.85  Aligned_cols=130  Identities=18%  Similarity=0.137  Sum_probs=107.8

Q ss_pred             ccccCCCceeEEeeccccCCCCCCCCcccccccccC-CcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChh-
Q 002129           53 GDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKL-QSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPES-  130 (962)
Q Consensus        53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~-  130 (962)
                      +.+.++++|+.|.+.++.       ...+ +.+..+ ++|++|++++|.++.+ ..|+.+++|++|++++|.++.+|.. 
T Consensus        13 ~~~~~~~~L~~L~l~~n~-------l~~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~   83 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYK-------IPVI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL   83 (176)
T ss_dssp             CEEECTTSCEEEECTTSC-------CCSC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred             HhcCCcCCceEEEeeCCC-------Cchh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence            455678899999887764       2334 456644 4999999999999988 7899999999999999999999866 


Q ss_pred             hhccCCccEEecCCCcchhccch--hhhccCCCcEEeccCCccccccccc----ccccccccccceeee
Q 002129          131 VSKLYNLHSLLLEDCDRLEKLCA--DMGNLVKLHHLKNSNTKSLEEMPVG----IGRLTCLQTLCSFVV  193 (962)
Q Consensus       131 i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~n~~~~~lp~~----~~~L~~L~~L~~~~~  193 (962)
                      ++.+++|++|++++| .++.+|.  .++.+++|++|++++|. +..+|..    ++.+++|+.|++..+
T Consensus        84 ~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           84 DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             hhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence            499999999999995 5688887  78999999999999998 7788875    889999999976553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.33  E-value=1.5e-12  Score=154.49  Aligned_cols=153  Identities=20%  Similarity=0.202  Sum_probs=97.8

Q ss_pred             CCceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccCccccCC
Q 002129           33 SRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPDSVGDL  111 (962)
Q Consensus        33 ~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~~~~~L  111 (962)
                      ...++++++..+.+...  ...+....+|+.+.+.....   ......++++.+ .++.|++|+|++|.+..+|..+..+
T Consensus       172 ~~~~~~l~L~~n~~~~~--~~~~l~~l~Ls~~~i~~~~~---~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l  246 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEA--NQALLQHKKLSQYSIDEDDD---IENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKY  246 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGC
T ss_pred             CCccceEEeeCCCCCcc--hhhHhhcCccCcccccCccc---cccceecChhhhccCCCCcEEECCCCCCCCCChhhcCC
Confidence            35688888877765542  23334444555554433221   011223566666 9999999999999999999999999


Q ss_pred             CcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCccccccccccccccccccccee
Q 002129          112 RYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSF  191 (962)
Q Consensus       112 ~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~  191 (962)
                      ++|++|+|++|.|+.+|..|++|++|++|+|++| .+..+|..|+.|++|++|+|++|. ++.+|.+|+.|++|++|++.
T Consensus       247 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          247 DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECT
T ss_pred             CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCC
Confidence            9999999999999999999999999999999996 466899999999999999999998 78999999999999999764


Q ss_pred             e
Q 002129          192 V  192 (962)
Q Consensus       192 ~  192 (962)
                      .
T Consensus       325 ~  325 (727)
T 4b8c_D          325 G  325 (727)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.32  E-value=3.9e-12  Score=124.23  Aligned_cols=102  Identities=23%  Similarity=0.336  Sum_probs=65.0

Q ss_pred             CcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhcc-chhhhccCCCcEEec
Q 002129           89 QSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKL-CADMGNLVKLHHLKN  166 (962)
Q Consensus        89 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l  166 (962)
                      ++|++|++++|.|+.+|..|.++++|++|+|++|.|+.++. .|..+++|++|++++|. +..+ |..|..+++|++|++
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEEC
Confidence            45666777777776666666677777777777777766653 36667777777777643 3333 345666777777777


Q ss_pred             cCCccccccccc-ccccccccccceee
Q 002129          167 SNTKSLEEMPVG-IGRLTCLQTLCSFV  192 (962)
Q Consensus       167 ~~n~~~~~lp~~-~~~L~~L~~L~~~~  192 (962)
                      ++|. +..+|.+ +..+++|+.|++..
T Consensus       110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A          110 HGND-ISVVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             CSSC-CCBCCTTTTTTCTTCCEEECCS
T ss_pred             CCCC-CCeeChhhhhcCccccEEEeCC
Confidence            7766 5555554 66666666665543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.32  E-value=6.7e-13  Score=157.48  Aligned_cols=123  Identities=22%  Similarity=0.277  Sum_probs=106.3

Q ss_pred             cccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhh
Q 002129           52 FGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESV  131 (962)
Q Consensus        52 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i  131 (962)
                      ...+..++.|++|.+..+.       ...+++.++.+++|++|+|++|.|+.+|..|+.|++|++|+|++|.|+.+|..|
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~-------l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~  289 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQ-------IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL  289 (727)
T ss_dssp             -----CCCCCCEEECTTSC-------CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG
T ss_pred             hhhhccCCCCcEEECCCCC-------CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh
Confidence            3456788999999987764       457888888999999999999999999999999999999999999999999999


Q ss_pred             hccCCccEEecCCCcchhccchhhhccCCCcEEeccCCccccccccccccc
Q 002129          132 SKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRL  182 (962)
Q Consensus       132 ~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L  182 (962)
                      +.|++|++|+|++| .++.+|.+|+.|++|++|+|++|.+.+.+|..++.+
T Consensus       290 ~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~  339 (727)
T 4b8c_D          290 GSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK  339 (727)
T ss_dssp             GGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred             cCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence            99999999999995 678999999999999999999999555666666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.31  E-value=1e-11  Score=128.15  Aligned_cols=142  Identities=19%  Similarity=0.210  Sum_probs=87.5

Q ss_pred             CceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCc
Q 002129           34 RYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRY  113 (962)
Q Consensus        34 ~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~  113 (962)
                      ..++++.+.++.+..+   +.+..+++|++|.+.++.       ...+++ +..+++|++|++++|.++.+|....  .+
T Consensus        41 ~~L~~L~l~~n~i~~l---~~l~~l~~L~~L~L~~N~-------i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~  107 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQSL---AGMQFFTNLKELHLSHNQ-------ISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--AC  107 (263)
T ss_dssp             TTCSEEECTTSCCCCC---TTGGGCTTCCEEECCSSC-------CCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SS
T ss_pred             CcCcEEECcCCCcccc---hHHhhCCCCCEEECCCCc-------cCCChh-hccCCCCCEEECCCCccCCcCcccc--Cc
Confidence            4566676666655432   345566677777665543       233333 4467777777777777776654333  67


Q ss_pred             CcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccccceeee
Q 002129          114 LRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVV  193 (962)
Q Consensus       114 L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~  193 (962)
                      |++|++++|.++.+| .++.+++|++|++++| .+..+| .++.+++|++|++++|. +..+ ..+..+++|+.|++..+
T Consensus       108 L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          108 LSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEEE
T ss_pred             ccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCCc-Ccch-HHhccCCCCCEEeCCCC
Confidence            777777777776664 3667777777777764 455554 56667777777777776 4444 44666666666655443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.31  E-value=3.9e-12  Score=138.39  Aligned_cols=103  Identities=25%  Similarity=0.322  Sum_probs=46.2

Q ss_pred             cCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhccchhhhccCCCcEE
Q 002129           87 KLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHL  164 (962)
Q Consensus        87 ~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L  164 (962)
                      .+++|++|+|++|.|+.++ ..|..+++|++|+|++|+++.+|. .|..+++|++|+|++|......|..|..+++|++|
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  141 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL  141 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence            4445555555555554443 234455555555555555544433 24445555555555432222223344455555555


Q ss_pred             eccCCcccccccccc----cccccccccce
Q 002129          165 KNSNTKSLEEMPVGI----GRLTCLQTLCS  190 (962)
Q Consensus       165 ~l~~n~~~~~lp~~~----~~L~~L~~L~~  190 (962)
                      ++++|. +..+|..+    +.+++|+.|++
T Consensus       142 ~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L  170 (361)
T 2xot_A          142 YLSQNQ-ISRFPVELIKDGNKLPKLMLLDL  170 (361)
T ss_dssp             ECCSSC-CCSCCGGGTC----CTTCCEEEC
T ss_pred             ECCCCc-CCeeCHHHhcCcccCCcCCEEEC
Confidence            555554 44444432    33444444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.29  E-value=5.5e-12  Score=123.29  Aligned_cols=84  Identities=18%  Similarity=0.245  Sum_probs=45.1

Q ss_pred             cCCcccEEEecCCCCccc-CccccCCCcCcEEEcCCCcccccChh-hhccCCccEEecCCCcchhccchhhhccCCCcEE
Q 002129           87 KLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHL  164 (962)
Q Consensus        87 ~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L  164 (962)
                      .+++|++|+|++|.|+.+ |..|.++++|++|+|++|+|+.+|.. |+.+++|++|++++|...+..|..++.+++|++|
T Consensus        52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  131 (192)
T 1w8a_A           52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred             cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence            555555555555555544 44555555555555555555554432 5555555555555543333334455555555555


Q ss_pred             eccCCc
Q 002129          165 KNSNTK  170 (962)
Q Consensus       165 ~l~~n~  170 (962)
                      ++++|.
T Consensus       132 ~L~~N~  137 (192)
T 1w8a_A          132 NLASNP  137 (192)
T ss_dssp             ECTTCC
T ss_pred             EeCCCC
Confidence            555555

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.27  E-value=5.4e-12  Score=137.33  Aligned_cols=153  Identities=16%  Similarity=0.110  Sum_probs=118.8

Q ss_pred             ccCccEEEecCCCCchhhhhhcc-CCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCC-CCCcccccc
Q 002129          689 PPSLKLLLVWGCSKLESIAEMLD-NNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLAM  766 (962)
Q Consensus       689 ~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~~  766 (962)
                      |+.++.|++++|.+.+..+..+. ++++|++|+|++|.+.+..+..+.++++|++|+|++| .+..++.. +..+++|+.
T Consensus        38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEV  116 (361)
T ss_dssp             CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCE
T ss_pred             CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCE
Confidence            36789999999988777777777 8999999999998877766778889999999999998 46666553 556889999


Q ss_pred             cccccccccccCccccCCCcccceeecCCCCCCCCCCCC-----CCCCccceEeecCchhhhHHHHhccccccccCc--c
Q 002129          767 LAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED-----GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSS--L  839 (962)
Q Consensus       767 L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~--L  839 (962)
                      |++++|......|..+..+++|+.|++++| .+..+|..     ..+++|+.|++++|.+.....    ..+..++.  |
T Consensus       117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~~~l  191 (361)
T 2xot_A          117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL----TDLQKLPAWVK  191 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCCCH----HHHHHSCHHHH
T ss_pred             EECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH----HHhhhccHhhc
Confidence            999999866666778889999999999998 56666654     347888889998887765433    23555665  4


Q ss_pred             ceeecccC
Q 002129          840 RQLTIMNC  847 (962)
Q Consensus       840 ~~L~l~~~  847 (962)
                      +.|++.+|
T Consensus       192 ~~l~l~~N  199 (361)
T 2xot_A          192 NGLYLHNN  199 (361)
T ss_dssp             TTEECCSS
T ss_pred             ceEEecCC
Confidence            77888875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.27  E-value=6.8e-12  Score=117.21  Aligned_cols=129  Identities=26%  Similarity=0.281  Sum_probs=105.4

Q ss_pred             ccCCceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcc-cCcccc
Q 002129           31 RFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILE-LPDSVG  109 (962)
Q Consensus        31 ~~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-lp~~~~  109 (962)
                      ..++.++++.+.++.+.....+..+..+++|+.|.+.++.       ...+ +.+..+++|++|++++|.++. +|..++
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-------l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~   85 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-------LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE   85 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-------CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred             CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-------CCCc-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence            3457899999999887622224566889999999987754       2333 445599999999999999997 788888


Q ss_pred             CCCcCcEEEcCCCcccccC--hhhhccCCccEEecCCCcchhccch----hhhccCCCcEEeccC
Q 002129          110 DLRYLRYLNLSGTEIRTLP--ESVSKLYNLHSLLLEDCDRLEKLCA----DMGNLVKLHHLKNSN  168 (962)
Q Consensus       110 ~L~~L~~L~Ls~n~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~----~i~~L~~L~~L~l~~  168 (962)
                      .+++|++|++++|.++.+|  ..++.+++|++|++++| .+..+|.    .++.+++|++|++++
T Consensus        86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence            8999999999999999876  77999999999999996 5666664    689999999999864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.22  E-value=5.7e-11  Score=115.92  Aligned_cols=93  Identities=23%  Similarity=0.326  Sum_probs=74.3

Q ss_pred             cEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccc-hhhhccCCCcEEeccCCc
Q 002129           92 RVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLC-ADMGNLVKLHHLKNSNTK  170 (962)
Q Consensus        92 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~n~  170 (962)
                      +++++++++++.+|..+.  .+|++|+|++|.|+.+|..|..+++|++|++++|. +..++ ..|..+++|++|++++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc
Confidence            689999999999998765  58999999999999999889999999999999964 55554 568999999999999998


Q ss_pred             ccccccc-ccccccccccc
Q 002129          171 SLEEMPV-GIGRLTCLQTL  188 (962)
Q Consensus       171 ~~~~lp~-~~~~L~~L~~L  188 (962)
                       +..+|. .|+.+++|++|
T Consensus        90 -l~~i~~~~f~~l~~L~~L  107 (193)
T 2wfh_A           90 -LRCIPPRTFDGLKSLRLL  107 (193)
T ss_dssp             -CCBCCTTTTTTCTTCCEE
T ss_pred             -cCEeCHHHhCCCCCCCEE
Confidence             555543 24444444444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.22  E-value=3.3e-11  Score=117.76  Aligned_cols=117  Identities=15%  Similarity=0.120  Sum_probs=96.5

Q ss_pred             CcccccccccCCcccEEEecCCCCcccCcc--ccCCCcCcEEEcCCCccccc-ChhhhccCCccEEecCCCcchhccchh
Q 002129           78 APSMLPKLLKLQSLRVFSLRGYRILELPDS--VGDLRYLRYLNLSGTEIRTL-PESVSKLYNLHSLLLEDCDRLEKLCAD  154 (962)
Q Consensus        78 ~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~--~~~L~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~  154 (962)
                      ...+|..++.  +|++|++++|.++.++..  |+.+++|++|+|++|.|+.+ |..|+.+++|++|++++|...+..|..
T Consensus        20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~   97 (192)
T 1w8a_A           20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM   97 (192)
T ss_dssp             CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred             cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHH
Confidence            3555655543  899999999999988753  89999999999999999988 677999999999999996544444556


Q ss_pred             hhccCCCcEEeccCCcccccccccccccccccccceeeecCC
Q 002129          155 MGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKD  196 (962)
Q Consensus       155 i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~  196 (962)
                      |+.+++|++|++++|.+.+..|..++.+++|++|++..+...
T Consensus        98 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            999999999999999954455777999999999987665444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.21  E-value=3e-11  Score=138.59  Aligned_cols=102  Identities=25%  Similarity=0.247  Sum_probs=76.6

Q ss_pred             cccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCC
Q 002129           90 SLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNT  169 (962)
Q Consensus        90 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n  169 (962)
                      .|++|+|++|.++.+|. |+.+++|++|+|++|.|+.+|..|+.+++|++|+|++| .+..+| .++.|++|++|++++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence            47778888888877776 77888888888888888888777888888888888874 455577 7778888888888888


Q ss_pred             cccccc--cccccccccccccceeeecC
Q 002129          170 KSLEEM--PVGIGRLTCLQTLCSFVVGK  195 (962)
Q Consensus       170 ~~~~~l--p~~~~~L~~L~~L~~~~~~~  195 (962)
                      . +..+  |..++.+++|+.|++..+..
T Consensus       519 ~-l~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          519 R-LQQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             C-CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             C-CCCCCCcHHHhcCCCCCEEEecCCcC
Confidence            7 5555  67778888888776655443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.18  E-value=3.5e-11  Score=115.85  Aligned_cols=127  Identities=13%  Similarity=0.068  Sum_probs=106.6

Q ss_pred             cCCceeEEEEEecCCCcccccccccCCC-ceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccc-c
Q 002129           32 FSRYLRHLSYIRGDYDGVQRFGDLYDIQ-HLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSV-G  109 (962)
Q Consensus        32 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~-~  109 (962)
                      -+..++++.+.++.+..+   +.+..+. +|+.|.+.++.       ...+ +.+..+++|++|++++|.++.+|..+ +
T Consensus        17 ~~~~L~~L~l~~n~l~~i---~~~~~~~~~L~~L~Ls~N~-------l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~   85 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNE-------IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQ   85 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSSC-------CCEE-CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred             CcCCceEEEeeCCCCchh---HHhhhcCCCCCEEECCCCC-------CCcc-cccccCCCCCEEECCCCcccccCcchhh
Confidence            356789999999887654   4455555 99999987764       2333 55559999999999999999998655 9


Q ss_pred             CCCcCcEEEcCCCcccccCh--hhhccCCccEEecCCCcchhccchh----hhccCCCcEEeccCCc
Q 002129          110 DLRYLRYLNLSGTEIRTLPE--SVSKLYNLHSLLLEDCDRLEKLCAD----MGNLVKLHHLKNSNTK  170 (962)
Q Consensus       110 ~L~~L~~L~Ls~n~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~----i~~L~~L~~L~l~~n~  170 (962)
                      .+++|++|++++|.++.+|.  .++.+++|++|++++| .+..+|..    ++.+++|+.|++++|.
T Consensus        86 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            99999999999999999987  7999999999999995 56778875    8999999999999997

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.15  E-value=6.8e-11  Score=113.12  Aligned_cols=102  Identities=23%  Similarity=0.256  Sum_probs=81.2

Q ss_pred             CcccccccccCCcccEEEecCCCCccc-CccccCCCcCcEEEcCCCcccccChh-hhccCCccEEecCCCcchhccchh-
Q 002129           78 APSMLPKLLKLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCAD-  154 (962)
Q Consensus        78 ~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~-  154 (962)
                      ...+|..+.  ++|++|+|++|.|+.+ |..|+++++|++|+|++|+|+.+|.. |+++++|++|+|++| .+..+|.. 
T Consensus        24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~  100 (174)
T 2r9u_A           24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGA  100 (174)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred             CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHH
Confidence            345565554  7889999999999977 56789999999999999999999876 688999999999984 56677765 


Q ss_pred             hhccCCCcEEeccCCcccccccccccccc
Q 002129          155 MGNLVKLHHLKNSNTKSLEEMPVGIGRLT  183 (962)
Q Consensus       155 i~~L~~L~~L~l~~n~~~~~lp~~~~~L~  183 (962)
                      |..+++|++|++++|. +...+..+..++
T Consensus       101 ~~~l~~L~~L~L~~N~-~~c~~~~~~~l~  128 (174)
T 2r9u_A          101 FDNLKSLTHIYLYNNP-WDCECRDIMYLR  128 (174)
T ss_dssp             TTTCTTCSEEECCSSC-BCTTBGGGHHHH
T ss_pred             hccccCCCEEEeCCCC-cccccccHHHHH
Confidence            8899999999999998 665555454444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.13  E-value=2e-10  Score=110.68  Aligned_cols=104  Identities=23%  Similarity=0.291  Sum_probs=63.0

Q ss_pred             CceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccCc-cccCCCcCcEEEcCCCcccccChh-hhccC
Q 002129           59 QHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPD-SVGDLRYLRYLNLSGTEIRTLPES-VSKLY  135 (962)
Q Consensus        59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~  135 (962)
                      ++|+.|.+.++.       ...+++..+ .+++|++|++++|.++.+|. .|+.+++|++|++++|.++.+|.. ++.++
T Consensus        28 ~~l~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~  100 (177)
T 2o6r_A           28 SSATRLELESNK-------LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLT  100 (177)
T ss_dssp             TTCSEEECCSSC-------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCcEEEeCCCc-------ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCc
Confidence            466666665443       234455544 66666666666666666643 356666666666666666666543 56666


Q ss_pred             CccEEecCCCcchhccchh-hhccCCCcEEeccCCc
Q 002129          136 NLHSLLLEDCDRLEKLCAD-MGNLVKLHHLKNSNTK  170 (962)
Q Consensus       136 ~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~n~  170 (962)
                      +|++|++++| .+..+|.. +..+++|++|++++|.
T Consensus       101 ~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          101 QLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence            6666666664 34455544 4566666666666665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.12  E-value=2.6e-10  Score=109.88  Aligned_cols=112  Identities=28%  Similarity=0.398  Sum_probs=93.3

Q ss_pred             cccccccccCCcccEEEecCCCCcccCc-cccCCCcCcEEEcCCCcccccChh-hhccCCccEEecCCCcchhccch-hh
Q 002129           79 PSMLPKLLKLQSLRVFSLRGYRILELPD-SVGDLRYLRYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCA-DM  155 (962)
Q Consensus        79 ~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~-~i  155 (962)
                      ..+|..+.  ++|++|++++|.++.+|. .|+.+++|++|++++|.++.+|.. ++.+++|++|++++| .+..+|. .+
T Consensus        20 ~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~   96 (177)
T 2o6r_A           20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVF   96 (177)
T ss_dssp             SSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred             ccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHh
Confidence            34444333  689999999999998865 579999999999999999999865 799999999999995 5656665 47


Q ss_pred             hccCCCcEEeccCCccccccccc-ccccccccccceeeec
Q 002129          156 GNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTLCSFVVG  194 (962)
Q Consensus       156 ~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~~~~~~  194 (962)
                      +.+++|++|++++|. +..+|.+ +..+++|++|++..+.
T Consensus        97 ~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           97 DKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence            999999999999998 7788876 6889999999776544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.12  E-value=6.3e-11  Score=135.91  Aligned_cols=128  Identities=23%  Similarity=0.277  Sum_probs=89.7

Q ss_pred             cccCCcccEEE-ecCCCCcccCc------cccC--CCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhh
Q 002129           85 LLKLQSLRVFS-LRGYRILELPD------SVGD--LRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADM  155 (962)
Q Consensus        85 ~~~l~~L~~L~-L~~~~i~~lp~------~~~~--L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i  155 (962)
                      +..+++|+.|+ ++.|.+..++.      .+..  ...|++|+|++|.++.+|. |+.+++|++|++++| .+..+|..|
T Consensus       405 l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~  482 (567)
T 1dce_A          405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPAL  482 (567)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGG
T ss_pred             HHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhh
Confidence            33778888887 55554333321      1111  1258889999999988887 888999999999985 566888889


Q ss_pred             hccCCCcEEeccCCcccccccccccccccccccceeeecCCCCCCcccccccccccceeEEe
Q 002129          156 GNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCIS  217 (962)
Q Consensus       156 ~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~  217 (962)
                      +.|++|++|++++|. +..+| .++.+++|++|++..+.......+..+..++.|+ .+.+.
T Consensus       483 ~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~-~L~L~  541 (567)
T 1dce_A          483 AALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV-LLNLQ  541 (567)
T ss_dssp             GGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC-EEECT
T ss_pred             hcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC-EEEec
Confidence            999999999999988 66787 7888889988877655443322245566666665 45444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.09  E-value=2.4e-10  Score=122.66  Aligned_cols=286  Identities=15%  Similarity=0.146  Sum_probs=141.0

Q ss_pred             cCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCcc-ccCccCCCCCCccEEEecCCCCccccCC--CC
Q 002129          493 DVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLV-KLPQSSLSLSSLREIEIYGCRSLVSFPE--VA  569 (962)
Q Consensus       493 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~  569 (962)
                      .+.+++.|.+++.     +.... ...+...+++|+.|+|++|.... ..+  ...++.++.+.+..+    .+|.  +.
T Consensus        23 ~~~~l~~L~l~g~-----i~~~~-~~~l~~~l~~L~~LdLs~n~i~~~~~~--~~~~~~~~~~~~~~~----~I~~~aF~   90 (329)
T 3sb4_A           23 EANSITHLTLTGK-----LNAED-FRHLRDEFPSLKVLDISNAEIKMYSGK--AGTYPNGKFYIYMAN----FVPAYAFS   90 (329)
T ss_dssp             HHHHCSEEEEEEE-----ECHHH-HHHHHHSCTTCCEEEEEEEEECCEEES--SSSSGGGCCEEECTT----EECTTTTE
T ss_pred             hhCceeEEEEecc-----ccHHH-HHHHHHhhccCeEEecCcceeEEecCc--ccccccccccccccc----ccCHHHhc
Confidence            4677889998862     11111 11233323779999999988651 111  112223444444443    3332  33


Q ss_pred             C--------CCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCCCCCCCCceEEecccCCCccccccc
Q 002129          570 L--------PSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEE  641 (962)
Q Consensus       570 ~--------~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~  641 (962)
                      .        +++|+.+++.+  .++.++...| .++++|+++++.+ +.+..++...+........+.........    
T Consensus        91 ~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF-~~~~~L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~~----  162 (329)
T 3sb4_A           91 NVVNGVTKGKQTLEKVILSE--KIKNIEDAAF-KGCDNLKICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAYR----  162 (329)
T ss_dssp             EEETTEEEECTTCCC-CBCT--TCCEECTTTT-TTCTTCCEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHHH----
T ss_pred             ccccccccccCCCcEEECCc--cccchhHHHh-hcCcccceEEcCC-CCccccchhhhcCCCceEEecCcchhhhh----
Confidence            4        67888888877  3667766665 7788888888887 44555555544333333322211100000    


Q ss_pred             cccccCCCCccccccceeEeeCCCCcccccc---CCCccccccccccCCCccCccEEEecCCCCchhhhhhccCCCCcce
Q 002129          642 GIQCSSGRRYTSSLLEHLEIYSCPSLTCIFS---KNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEK  718 (962)
Q Consensus       642 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  718 (962)
                                ....++.....+|..++....   .+.++..+..  ...-+.+++.+.+.+.-...........+++|+.
T Consensus       163 ----------~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~  230 (329)
T 3sb4_A          163 ----------FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMK--AGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVS  230 (329)
T ss_dssp             ----------TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHH--TTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCE
T ss_pred             ----------ccccccccccccccccceeEEecCCCcHHHHHhh--cccCccccceEEEeeeecHHHHHHHHHhcCCCeE
Confidence                      000122222333333331100   0001100000  0001145566666554322222222334667777


Q ss_pred             EeecCCccccccCccccCCCCccEEEcccCCCcccCCCC-CCCccccc-ccccccccccccCc-cccCCCcccceeecCC
Q 002129          719 INISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLA-MLAIYNCKRLEALP-KGLHNLKSLQELRIGK  795 (962)
Q Consensus       719 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~-~L~l~~c~~l~~~~-~~~~~l~~L~~L~l~~  795 (962)
                      +++++|......+..|.++++|++|++.++  ++.++.. +..+++|+ .+++.+ . +..++ ..|.++++|+.+++++
T Consensus       231 l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~-l~~I~~~aF~~c~~L~~l~l~~  306 (329)
T 3sb4_A          231 LDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-S-VTAIEFGAFMGCDNLRYVLATG  306 (329)
T ss_dssp             EECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-T-CCEECTTTTTTCTTEEEEEECS
T ss_pred             EECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-c-ceEEchhhhhCCccCCEEEeCC
Confidence            777766544444455666777777777665  5555544 33466676 666665 2 34443 4566777777777665


Q ss_pred             CCCCCCCCCC--CCCCccceEe
Q 002129          796 GVALPSLEED--GLPTNLHVLL  815 (962)
Q Consensus       796 ~~~l~~~~~~--~~~~~L~~L~  815 (962)
                      + .++.++..  ..+++|+.++
T Consensus       307 n-~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          307 D-KITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             S-CCCEECTTTTCTTCCCCEEE
T ss_pred             C-ccCccchhhhcCCcchhhhc
Confidence            5 45444442  3345666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.08  E-value=3.8e-12  Score=125.35  Aligned_cols=126  Identities=20%  Similarity=0.235  Sum_probs=84.2

Q ss_pred             cccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhc
Q 002129           54 DLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSK  133 (962)
Q Consensus        54 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~  133 (962)
                      .+..+++|++|.+.++.       ...+| .+..+++|++|++++|.++.+|..+..+++|++|++++|+++.+| .++.
T Consensus        43 ~~~~l~~L~~L~ls~n~-------l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~  113 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNN-------IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK  113 (198)
T ss_dssp             HHHHTTTCSEEECSEEE-------ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred             HHhcCCCCCEEECCCCC-------Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence            45667777777776553       23333 444777777777777777777777777777777777777777776 5777


Q ss_pred             cCCccEEecCCCcchhccch--hhhccCCCcEEeccCCccccccccc----------ccccccccccc
Q 002129          134 LYNLHSLLLEDCDRLEKLCA--DMGNLVKLHHLKNSNTKSLEEMPVG----------IGRLTCLQTLC  189 (962)
Q Consensus       134 L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~n~~~~~lp~~----------~~~L~~L~~L~  189 (962)
                      +++|++|++++| .+..+|.  .+..+++|++|++++|.+....|..          +..+++|+.|+
T Consensus       114 l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            777777777774 4555543  5777777777777777733333321          56666666664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.07  E-value=3.3e-10  Score=108.01  Aligned_cols=89  Identities=27%  Similarity=0.363  Sum_probs=64.6

Q ss_pred             cccccccccCCcccEEEecCCCCccc-CccccCCCcCcEEEcCCCcccccChh-hhccCCccEEecCCCcchhccch-hh
Q 002129           79 PSMLPKLLKLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCA-DM  155 (962)
Q Consensus        79 ~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~-~i  155 (962)
                      ..+|..+.  ++|++|+|++|.|+.+ |..|.++++|++|+|++|+|+.+|.. |..+++|++|+|++| .+..+|. .|
T Consensus        22 ~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~   98 (170)
T 3g39_A           22 ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAF   98 (170)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred             CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHh
Confidence            44554443  6777888888888776 55678888888888888888877655 677888888888874 4555554 47


Q ss_pred             hccCCCcEEeccCCc
Q 002129          156 GNLVKLHHLKNSNTK  170 (962)
Q Consensus       156 ~~L~~L~~L~l~~n~  170 (962)
                      ..+++|++|++++|.
T Consensus        99 ~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           99 DNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             cCCCCCCEEEeCCCC
Confidence            778888888888876

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.07  E-value=3e-10  Score=108.29  Aligned_cols=101  Identities=22%  Similarity=0.311  Sum_probs=87.6

Q ss_pred             ccEEEecCCCCcccCccccCCCcCcEEEcCCCccccc-ChhhhccCCccEEecCCCcchhccchh-hhccCCCcEEeccC
Q 002129           91 LRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTL-PESVSKLYNLHSLLLEDCDRLEKLCAD-MGNLVKLHHLKNSN  168 (962)
Q Consensus        91 L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~  168 (962)
                      .+++++++|.++.+|..+.  .+|++|+|++|.|+.+ |..|+++++|++|++++| .+..+|.. |..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence            5789999999999998774  8999999999999988 566999999999999995 56677655 69999999999999


Q ss_pred             Cccccccccc-ccccccccccceeeecC
Q 002129          169 TKSLEEMPVG-IGRLTCLQTLCSFVVGK  195 (962)
Q Consensus       169 n~~~~~lp~~-~~~L~~L~~L~~~~~~~  195 (962)
                      |. +..+|.+ ++.+++|++|++..+..
T Consensus        88 N~-l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           88 NQ-LKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             SC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             Cc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            99 7788775 99999999997765543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.06  E-value=3.3e-10  Score=108.31  Aligned_cols=100  Identities=20%  Similarity=0.352  Sum_probs=88.0

Q ss_pred             cEEEecCCCCcccCccccCCCcCcEEEcCCCccccc-ChhhhccCCccEEecCCCcchhccchh-hhccCCCcEEeccCC
Q 002129           92 RVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTL-PESVSKLYNLHSLLLEDCDRLEKLCAD-MGNLVKLHHLKNSNT  169 (962)
Q Consensus        92 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~n  169 (962)
                      +++++++++++.+|..+.  .+|++|+|++|.|+.+ |..|+++++|++|+|++| .+..+|.. |.++++|++|++++|
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence            789999999999998775  8999999999999988 556999999999999995 67778765 689999999999999


Q ss_pred             ccccccccc-ccccccccccceeeecC
Q 002129          170 KSLEEMPVG-IGRLTCLQTLCSFVVGK  195 (962)
Q Consensus       170 ~~~~~lp~~-~~~L~~L~~L~~~~~~~  195 (962)
                      . +..+|.+ ++.+++|++|++..+..
T Consensus        92 ~-l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           92 H-LKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             C-CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             c-cceeCHHHhccccCCCEEEeCCCCc
Confidence            9 7888876 99999999997765543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.03  E-value=4.8e-10  Score=120.21  Aligned_cols=91  Identities=13%  Similarity=0.102  Sum_probs=46.3

Q ss_pred             CCccceEeecCchhhhHHHHhccccccccCccceeecccCCCCCccCCCCCCCCCCCccccCCCccc-eEeeccCCCCcc
Q 002129          808 PTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLT-YLRIEGFPNLER  886 (962)
Q Consensus       808 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~  886 (962)
                      +++|+.+++++|.+.....    ..|.++++|+++++.++   +..++.        .+|..+++|+ ++++.+  .++.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~----~aF~~~~~L~~l~l~~n---i~~I~~--------~aF~~~~~L~~~l~l~~--~l~~  287 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPD----FTFAQKKYLLKIKLPHN---LKTIGQ--------RVFSNCGRLAGTLELPA--SVTA  287 (329)
T ss_dssp             CTTCCEEECTTBCCCEECT----TTTTTCTTCCEEECCTT---CCEECT--------TTTTTCTTCCEEEEECT--TCCE
T ss_pred             cCCCeEEECCCCCcceecH----hhhhCCCCCCEEECCcc---cceehH--------HHhhCChhccEEEEEcc--cceE
Confidence            4555555555554433322    44555666666666552   333332        2245555565 666655  4555


Q ss_pred             ccc-ccccCCCcCeEeccCCCCCccCCCCCC
Q 002129          887 LTS-SIVDLQNLTGLVLGNCPKLKYFPEKGL  916 (962)
Q Consensus       887 l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~  916 (962)
                      |+. .|.++++|++|++.+ ++++.++...+
T Consensus       288 I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF  317 (329)
T 3sb4_A          288 IEFGAFMGCDNLRYVLATG-DKITTLGDELF  317 (329)
T ss_dssp             ECTTTTTTCTTEEEEEECS-SCCCEECTTTT
T ss_pred             EchhhhhCCccCCEEEeCC-CccCccchhhh
Confidence            542 345555566665544 34555555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.01  E-value=8.2e-12  Score=122.97  Aligned_cols=110  Identities=22%  Similarity=0.243  Sum_probs=95.0

Q ss_pred             cccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhcc
Q 002129           79 PSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNL  158 (962)
Q Consensus        79 ~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L  158 (962)
                      ..+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..++.+++|++|++++| .+..+| .++.+
T Consensus        38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l  114 (198)
T 1ds9_A           38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKL  114 (198)
T ss_dssp             CCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHH
T ss_pred             hhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccC
Confidence            344445569999999999999999998 899999999999999999999998899999999999995 666777 79999


Q ss_pred             CCCcEEeccCCcccccccc--cccccccccccceee
Q 002129          159 VKLHHLKNSNTKSLEEMPV--GIGRLTCLQTLCSFV  192 (962)
Q Consensus       159 ~~L~~L~l~~n~~~~~lp~--~~~~L~~L~~L~~~~  192 (962)
                      ++|++|++++|. +..+|.  .++.+++|++|++..
T Consensus       115 ~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~  149 (198)
T 1ds9_A          115 VNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             HHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECS
T ss_pred             CCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecC
Confidence            999999999998 776664  588888998886643

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.87  E-value=6.2e-08  Score=105.86  Aligned_cols=126  Identities=13%  Similarity=0.156  Sum_probs=77.4

Q ss_pred             CccEEEecCCCCchhhhhhccCCCCcceEeecCCccc-----cccCccccCCCCccEEEcccCCCcccCCCCC-CCcccc
Q 002129          691 SLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNL-----QTLPSGLHNLCQLQEISIASCGNLVSSPEGG-LPCAKL  764 (962)
Q Consensus       691 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~-~~~~~L  764 (962)
                      +|+.+.+.+ .....-..+|.+|++|+.+++.++...     ...+..|.++++|+.+.+.+  .+..++... ..|++|
T Consensus       249 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L  325 (401)
T 4fdw_A          249 GITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKV  325 (401)
T ss_dssp             CCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSC
T ss_pred             CccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCc
Confidence            455555532 222233456777788888887765543     22345677788888888874  366666543 346788


Q ss_pred             cccccccccccccCc-cccCCCcccceeecCCCCCCCCCCCC---CCCCccceEeecCchhhh
Q 002129          765 AMLAIYNCKRLEALP-KGLHNLKSLQELRIGKGVALPSLEED---GLPTNLHVLLINGNMEIW  823 (962)
Q Consensus       765 ~~L~l~~c~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~  823 (962)
                      +.+.+..+  +..++ ..|.++ +|+.+++.++. +..++..   +....++.+.+..+....
T Consensus       326 ~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~~~~~  384 (401)
T 4fdw_A          326 TQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPAESVEK  384 (401)
T ss_dssp             CEEEECTT--CCEECTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECGGGHHH
T ss_pred             cEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCHHHHHH
Confidence            88888554  44443 367777 88888888773 3333322   334578888888765433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.79  E-value=6.3e-09  Score=112.62  Aligned_cols=89  Identities=20%  Similarity=0.156  Sum_probs=43.6

Q ss_pred             ccccccccCCcccEEEecC-CCCcccC-ccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhccchhhh
Q 002129           80 SMLPKLLKLQSLRVFSLRG-YRILELP-DSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLCADMG  156 (962)
Q Consensus        80 ~~~~~~~~l~~L~~L~L~~-~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~  156 (962)
                      .+|+ +..+++|++|+|++ |.|+.+| ..|++|.+|++|+|++|+|+.+|. .|++|++|++|+|++| .+..+|..+.
T Consensus        23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~  100 (347)
T 2ifg_A           23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTV  100 (347)
T ss_dssp             TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTT
T ss_pred             ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHc
Confidence            3444 33555555555553 5555544 345555555555555555554432 3455555555555552 3444443322


Q ss_pred             ccCCCcEEeccCCc
Q 002129          157 NLVKLHHLKNSNTK  170 (962)
Q Consensus       157 ~L~~L~~L~l~~n~  170 (962)
                      ....|+.|++.+|.
T Consensus       101 ~~~~L~~l~l~~N~  114 (347)
T 2ifg_A          101 QGLSLQELVLSGNP  114 (347)
T ss_dssp             CSCCCCEEECCSSC
T ss_pred             ccCCceEEEeeCCC
Confidence            22225555555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.77  E-value=1e-07  Score=104.13  Aligned_cols=245  Identities=12%  Similarity=0.087  Sum_probs=129.3

Q ss_pred             Ccccccccc-cCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhccchh
Q 002129           78 APSMLPKLL-KLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLCAD  154 (962)
Q Consensus        78 ~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~  154 (962)
                      ...+.+..| + .+|+.+.+..+ ++.++ .+|.+ .+|+.+.+.. .++.++. .|.++.+|+.+++.. +.+..+|..
T Consensus       124 i~~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~  198 (401)
T 4fdw_A          124 VKSIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPAS  198 (401)
T ss_dssp             CCEECTTTTTT-CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTT
T ss_pred             cCEehHhhccc-CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechh
Confidence            345555566 4 36777777654 66664 34555 3577777765 5666653 477777777777776 456666655


Q ss_pred             hhccCCCcEEeccCCccccccccc-ccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhcc
Q 002129          155 MGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQL  233 (962)
Q Consensus       155 i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l  233 (962)
                      .-...+|+.+.+..+  +..++.. |..+++|+.+.+-..             ++                  ......|
T Consensus       199 aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-------------l~------------------~I~~~aF  245 (401)
T 4fdw_A          199 TFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-------------VS------------------TIGQEAF  245 (401)
T ss_dssp             TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-------------CC------------------EECTTTT
T ss_pred             hEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-------------cc------------------Ccccccc
Confidence            333577777777644  5555544 667777776643110             00                  0001112


Q ss_pred             CCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCC-----CCCccccCCCCCCceEEEEecCCCC
Q 002129          234 DRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGM-----KFPTWLGDSSFSKLVTLKFKNCDMC  308 (962)
Q Consensus       234 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~~~l~~L~~L~L~~~~~~  308 (962)
                      .+ .+|+.+.+..+ .         ....-.+|..+++|+.+.+.++...     .++...+. .+++|+.+.+.++  .
T Consensus       246 ~~-~~L~~i~lp~~-i---------~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~-~c~~L~~l~l~~~--i  311 (401)
T 4fdw_A          246 RE-SGITTVKLPNG-V---------TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE-GCPKLARFEIPES--I  311 (401)
T ss_dssp             TT-CCCSEEEEETT-C---------CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT-TCTTCCEECCCTT--C
T ss_pred             cc-CCccEEEeCCC-c---------cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh-CCccCCeEEeCCc--e
Confidence            23 34555555211 0         0011134555566666666554432     34444443 5667777777643  2


Q ss_pred             CCCC--CCCCCCCCCeEEEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCCcccccCC-CccEEEec
Q 002129          309 TALP--SVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFP-KLRELRIL  385 (962)
Q Consensus       309 ~~l~--~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~L~~L~l~  385 (962)
                      ..++  .|..+++|+.+.|..+  ++.++...|..     . +|+.+.+.+.. .... ....   +..++ .++.|.+-
T Consensus       312 ~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~-----~-~L~~l~l~~n~-~~~l-~~~~---F~~~~~~l~~l~vp  378 (401)
T 4fdw_A          312 RILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNN-----T-GIKEVKVEGTT-PPQV-FEKV---WYGFPDDITVIRVP  378 (401)
T ss_dssp             CEECTTTTTTCCSCCEEEECTT--CCEECTTSSSS-----S-CCCEEEECCSS-CCBC-CCSS---CCCSCTTCCEEEEC
T ss_pred             EEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCC-----C-CCCEEEEcCCC-Cccc-cccc---ccCCCCCccEEEeC
Confidence            2232  5667777777777543  55565444432     4 67777776531 1111 1111   23343 56777776


Q ss_pred             cC
Q 002129          386 RC  387 (962)
Q Consensus       386 ~c  387 (962)
                      ..
T Consensus       379 ~~  380 (401)
T 4fdw_A          379 AE  380 (401)
T ss_dssp             GG
T ss_pred             HH
Confidence            54

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.62  E-value=3e-06  Score=93.07  Aligned_cols=129  Identities=9%  Similarity=0.047  Sum_probs=63.3

Q ss_pred             cCCCCCCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCcc
Q 002129          460 AGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLV  539 (962)
Q Consensus       460 ~~~~~~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~  539 (962)
                      ...++..+.+|+++.+.++ ++.   ....+|..+.+|+.+++.+  .++.+....    |... .+|+.+.+..+  +.
T Consensus        63 g~~AF~~c~~L~~i~lp~~-i~~---I~~~aF~~c~~L~~i~lp~--~l~~I~~~a----F~~c-~~L~~i~~p~~--l~  129 (394)
T 4fs7_A           63 GYAAFQGCRKVTEIKIPST-VRE---IGEFAFENCSKLEIINIPD--SVKMIGRCT----FSGC-YALKSILLPLM--LK  129 (394)
T ss_dssp             CTTTTTTCTTEEEEECCTT-CCE---ECTTTTTTCTTCCEECCCT--TCCEECTTT----TTTC-TTCCCCCCCTT--CC
T ss_pred             HHHHhhCCCCceEEEeCCC-ccC---cchhHhhCCCCCcEEEeCC--CceEccchh----hccc-ccchhhcccCc--ee
Confidence            3446677788888888643 443   3456677888888888753  355554432    2111 45555554432  12


Q ss_pred             ccC-ccCCCCCCccEEEecCCCCccccC--CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecC
Q 002129          540 KLP-QSSLSLSSLREIEIYGCRSLVSFP--EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISG  607 (962)
Q Consensus       540 ~~~-~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~  607 (962)
                      .+. ..+..+..++.....   ....+.  .+..+++|+.+.+.++  +..++...+ ..+.+|+.+.+..
T Consensus       130 ~i~~~aF~~~~~~~~~~~~---~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F-~~c~~L~~i~l~~  194 (394)
T 4fs7_A          130 SIGVEAFKGCDFKEITIPE---GVTVIGDEAFATCESLEYVSLPDS--METLHNGLF-SGCGKLKSIKLPR  194 (394)
T ss_dssp             EECTTTTTTCCCSEEECCT---TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCBCCCCT
T ss_pred             eecceeeecccccccccCc---cccccchhhhcccCCCcEEecCCc--cceeccccc-cCCCCceEEEcCC
Confidence            111 223333322222111   122222  2344566666666543  233444333 5556666666543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.61  E-value=1.2e-06  Score=96.20  Aligned_cols=207  Identities=11%  Similarity=0.066  Sum_probs=119.2

Q ss_pred             cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAI  769 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l  769 (962)
                      .+|+.+.+.++- ...-..+|.++.+|+.+++..+ ........+.+++.|+.+.+..+  ...+....+...+|+.+.+
T Consensus       162 ~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~i  237 (394)
T 4fs7_A          162 ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIII  237 (394)
T ss_dssp             TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEE
T ss_pred             CCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEE
Confidence            456666665432 2223356777777777777653 22222345566777777766653  2333334444556776666


Q ss_pred             ccccccccCc-cccCCCcccceeecCCCCCCCCCCC--CCCCCccceEeecCchhhhHHHHhccccccccCccceeeccc
Q 002129          770 YNCKRLEALP-KGLHNLKSLQELRIGKGVALPSLEE--DGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMN  846 (962)
Q Consensus       770 ~~c~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  846 (962)
                      ...-  ..+. ..+..+..|+.+.+..+.  ..+..  ...+..++.+.........       ..+..+.+|+.+.+.+
T Consensus       238 p~~~--~~i~~~~f~~~~~l~~~~~~~~~--~~i~~~~F~~~~~l~~~~~~~~~i~~-------~~F~~~~~L~~i~l~~  306 (394)
T 4fs7_A          238 PDSF--TELGKSVFYGCTDLESISIQNNK--LRIGGSLFYNCSGLKKVIYGSVIVPE-------KTFYGCSSLTEVKLLD  306 (394)
T ss_dssp             CTTC--CEECSSTTTTCSSCCEEEECCTT--CEECSCTTTTCTTCCEEEECSSEECT-------TTTTTCTTCCEEEECT
T ss_pred             CCCc--eecccccccccccceeEEcCCCc--ceeeccccccccccceeccCceeecc-------cccccccccccccccc
Confidence            5432  2222 345667777777776542  22222  1334566666555432111       4567778888888766


Q ss_pred             CCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCccccc-ccccCCCcCeEeccCCCCCccCCCCCCc--ccccee
Q 002129          847 CDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTS-SIVDLQNLTGLVLGNCPKLKYFPEKGLP--SSLLQL  923 (962)
Q Consensus       847 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~--~sL~~L  923 (962)
                      +   +..+++        .++..+.+|+++++.+  .++.|.. .|.++.+|+++.+..  +++.+....+.  ++|+.+
T Consensus       307 ~---i~~I~~--------~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i  371 (394)
T 4fs7_A          307 S---VKFIGE--------EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKV  371 (394)
T ss_dssp             T---CCEECT--------TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEE
T ss_pred             c---cceech--------hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEE
Confidence            2   344433        3456778888888864  4777764 456778888888765  37777776664  677777


Q ss_pred             ecc
Q 002129          924 SIN  926 (962)
Q Consensus       924 ~i~  926 (962)
                      ++.
T Consensus       372 ~lp  374 (394)
T 4fs7_A          372 ELP  374 (394)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            774

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.58  E-value=8.3e-08  Score=103.73  Aligned_cols=101  Identities=16%  Similarity=0.061  Sum_probs=82.7

Q ss_pred             EEEecCC-CCcccCccccCCCcCcEEEcCC-CcccccC-hhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCC
Q 002129           93 VFSLRGY-RILELPDSVGDLRYLRYLNLSG-TEIRTLP-ESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNT  169 (962)
Q Consensus        93 ~L~L~~~-~i~~lp~~~~~L~~L~~L~Ls~-n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n  169 (962)
                      .++++++ +++.+|. +..+++|++|+|++ |.|+.+| ..|+.|++|++|+|++|...+..|..|++|++|++|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4688888 8999999 99999999999996 9999987 45999999999999996544444567899999999999999


Q ss_pred             ccccccccc-ccccccccccceeeecCC
Q 002129          170 KSLEEMPVG-IGRLTCLQTLCSFVVGKD  196 (962)
Q Consensus       170 ~~~~~lp~~-~~~L~~L~~L~~~~~~~~  196 (962)
                      . +..+|.+ +..++ |+.|++..+...
T Consensus        91 ~-l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 A-LESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             C-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             c-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence            8 7788876 44444 888877654433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.36  E-value=4.3e-08  Score=106.05  Aligned_cols=154  Identities=18%  Similarity=0.115  Sum_probs=103.1

Q ss_pred             cCCceeEEEEEecCCCcccccccc----c-CCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCccc-
Q 002129           32 FSRYLRHLSYIRGDYDGVQRFGDL----Y-DIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILEL-  104 (962)
Q Consensus        32 ~~~~~r~lsl~~~~~~~~~~~~~~----~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~l-  104 (962)
                      +.+.++.+++.++.+.... ...+    . ..++|+.|.+.++.      +.......++ .+++|+.|+|++|.++.. 
T Consensus        70 ~~~~L~~L~Ls~n~l~~~~-~~~l~~~L~~~~~~L~~L~Ls~n~------l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~  142 (372)
T 3un9_A           70 VLSSLRQLNLAGVRMTPVK-CTVVAAVLGSGRHALDEVNLASCQ------LDPAGLRTLLPVFLRARKLGLQLNSLGPEA  142 (372)
T ss_dssp             HHTTCCEEECTTSCCCHHH-HHHHHHHHSSCSSCEEEEECTTCC------CCHHHHHHTHHHHHTEEEEECCSSCCCHHH
T ss_pred             HHhhCCEEEecCCCCCHHH-HHHHHHHHhhCCCCceEEEecCCC------CCHHHHHHHHHHHHhccHhhcCCCCCCHHH
Confidence            3457888888887765322 1111    1 23689999887653      2333344555 677899999999988743 


Q ss_pred             ----Cccc-cCCCcCcEEEcCCCcccc-----cChhhhccCCccEEecCCCcchh----ccchhhhccCCCcEEeccCCc
Q 002129          105 ----PDSV-GDLRYLRYLNLSGTEIRT-----LPESVSKLYNLHSLLLEDCDRLE----KLCADMGNLVKLHHLKNSNTK  170 (962)
Q Consensus       105 ----p~~~-~~L~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~~~----~lp~~i~~L~~L~~L~l~~n~  170 (962)
                          ...+ ....+|++|+|++|.|+.     ++..+...++|++|+|++|....    .+++.+...++|++|++++|.
T Consensus       143 ~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          143 CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence                2222 356789999999998864     45556788899999999965332    345667788899999999998


Q ss_pred             cccc-----ccccccccccccccceeee
Q 002129          171 SLEE-----MPVGIGRLTCLQTLCSFVV  193 (962)
Q Consensus       171 ~~~~-----lp~~~~~L~~L~~L~~~~~  193 (962)
                       ++.     ++..+...++|++|++..+
T Consensus       223 -i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          223 -AGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             -CCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             -CCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence             443     2333556678888866443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.35  E-value=1.6e-08  Score=109.53  Aligned_cols=156  Identities=16%  Similarity=0.096  Sum_probs=86.1

Q ss_pred             cCccEEEecCCCCchhhhhh----cc-CCCCcceEeecCCccccccCccc-cCCCCccEEEcccCCCcccCCCC-----C
Q 002129          690 PSLKLLLVWGCSKLESIAEM----LD-NNTSLEKINISGCGNLQTLPSGL-HNLCQLQEISIASCGNLVSSPEG-----G  758 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~----~~-~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~l~~~~~~-----~  758 (962)
                      +.|++|++++|.+.......    +. ..++|++|+|++|.+.......+ ..+++|++|+|++|. ++..+..     .
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHH
Confidence            67888888888876654333    33 23688888888887644322222 345678888888883 3321110     0


Q ss_pred             -CCcccccccccccccccc----cCccccCCCcccceeecCCCCCCCCC-----CC-CCCCCccceEeecCchhhhHHHH
Q 002129          759 -LPCAKLAMLAIYNCKRLE----ALPKGLHNLKSLQELRIGKGVALPSL-----EE-DGLPTNLHVLLINGNMEIWKSMI  827 (962)
Q Consensus       759 -~~~~~L~~L~l~~c~~l~----~~~~~~~~l~~L~~L~l~~~~~l~~~-----~~-~~~~~~L~~L~l~~~~~~~~~~~  827 (962)
                       .+.++|++|++++|....    .++..+...++|++|++++|. ++..     .. ...+++|++|++++|.+......
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence             123577777887776432    233344566777777777774 3211     00 11234566666666655443221


Q ss_pred             hccccccccCccceeecccC
Q 002129          828 ERGRGFHRFSSLRQLTIMNC  847 (962)
Q Consensus       828 ~~~~~~~~l~~L~~L~l~~~  847 (962)
                      .....+...++|++|++++|
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTS
T ss_pred             HHHHHHHhCCCCCEEeccCC
Confidence            11122334455666666665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.24  E-value=8.1e-07  Score=95.03  Aligned_cols=113  Identities=19%  Similarity=0.152  Sum_probs=62.8

Q ss_pred             hhccCCCCcceEeecCCcc---------ccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccC
Q 002129          708 EMLDNNTSLEKINISGCGN---------LQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEAL  778 (962)
Q Consensus       708 ~~~~~l~~L~~L~l~~~~~---------~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~  778 (962)
                      .++..+++|+.|.+.....         .+.+...+..+|+|++|+|++|..+. ++.  ...++|+.|++..|......
T Consensus       133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~--~~~~~L~~L~L~~~~l~~~~  209 (362)
T 2ra8_A          133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK--KPRPNLKSLEIISGGLPDSV  209 (362)
T ss_dssp             TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS--CBCTTCSEEEEECSBCCHHH
T ss_pred             HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc--ccCCCCcEEEEecCCCChHH
Confidence            3345566777777654321         11233445667888888888874332 333  23678888888877643322


Q ss_pred             cccc--CCCcccceeecCCCCC-------CCCC---CCCCCCCccceEeecCchhhh
Q 002129          779 PKGL--HNLKSLQELRIGKGVA-------LPSL---EEDGLPTNLHVLLINGNMEIW  823 (962)
Q Consensus       779 ~~~~--~~l~~L~~L~l~~~~~-------l~~~---~~~~~~~~L~~L~l~~~~~~~  823 (962)
                      ...+  ..+|+|++|+++.+..       +..+   .....+++|++|.+++|.+..
T Consensus       210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~  266 (362)
T 2ra8_A          210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN  266 (362)
T ss_dssp             HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH
T ss_pred             HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch
Confidence            2222  3688888888753211       1111   111235667777776666543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.21  E-value=0.00012  Score=80.26  Aligned_cols=126  Identities=17%  Similarity=0.278  Sum_probs=76.1

Q ss_pred             hhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCC-CCcccccccccccccccccCc-cccCC
Q 002129          707 AEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGG-LPCAKLAMLAIYNCKRLEALP-KGLHN  784 (962)
Q Consensus       707 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l~~~~-~~~~~  784 (962)
                      ..+|.++..|+.+.+.... .......+.++++|+.+.+..  .+..++... ..|.+|+.+.+..+  +..++ ..|.+
T Consensus       258 ~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~  332 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAG  332 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT
T ss_pred             cceeeecccccEEeccccc-ceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhC
Confidence            3567888888888886532 222345667788888888863  466666653 34778888888653  44443 36788


Q ss_pred             CcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhhhHHHHhccccccccCccceeeccc
Q 002129          785 LKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMN  846 (962)
Q Consensus       785 l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  846 (962)
                      +.+|+.+.+..+  ++.+...  ..+++|+.+++.++....       ..+.....|+.+.+..
T Consensus       333 C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~-------~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          333 CEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQW-------NAISTDSGLQNLPVAP  387 (394)
T ss_dssp             CTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHH-------HTCBCCCCC-------
T ss_pred             CCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceeeh-------hhhhccCCCCEEEeCC
Confidence            888888888543  5555442  446777777777765432       2345566666666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.15  E-value=2.5e-06  Score=91.27  Aligned_cols=62  Identities=23%  Similarity=0.191  Sum_probs=34.5

Q ss_pred             cCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecC
Q 002129          544 SSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISG  607 (962)
Q Consensus       544 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~  607 (962)
                      .+..+|+|+.|.|++|..+. ++.. ..++|++|++..|..............+|+|++|+|+.
T Consensus       167 ll~~~P~L~~L~L~g~~~l~-l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~  228 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNLS-IGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV  228 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTCB-CCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred             HHhcCCCCcEEEEeCCCCce-eccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence            34556788888887763332 3332 26778888887766221111111113567777777753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.04  E-value=1.6e-06  Score=80.72  Aligned_cols=68  Identities=15%  Similarity=0.175  Sum_probs=38.8

Q ss_pred             CCCCCCccEEEecCCCCccccC--CCCC----CCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCc
Q 002129          545 SLSLSSLREIEIYGCRSLVSFP--EVAL----PSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTY  613 (962)
Q Consensus       545 ~~~l~~L~~L~l~~~~~l~~~~--~~~~----~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~  613 (962)
                      +..+++|++|+|++|..+++-.  .+..    .++|++|+|++|..+++.....+ ..+++|++|++++|+.++.
T Consensus        81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A           81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCTTCCEEEEESCTTCCC
T ss_pred             hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCCCCCEEECCCCCCCCc
Confidence            3456677777777776665422  1111    23566667766666665444433 3456666666666665554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.00  E-value=0.00017  Score=79.01  Aligned_cols=122  Identities=7%  Similarity=0.105  Sum_probs=77.1

Q ss_pred             ccccCCC-ceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCC---CcccC-ccccCCCcCcEEEcCCCcccc
Q 002129           53 GDLYDIQ-HLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYR---ILELP-DSVGDLRYLRYLNLSGTEIRT  126 (962)
Q Consensus        53 ~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~---i~~lp-~~~~~L~~L~~L~Ls~n~i~~  126 (962)
                      .+|.+++ .|+++.+-+.        ...+.+..| ++.+|+.+.+..+.   ++.+. .+|.++.+|+.+.+..+ ++.
T Consensus        57 ~aF~~~~~~L~sI~iP~s--------vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~  127 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT--------VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE  127 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT--------CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred             hhccCCCCcCEEEEECCC--------eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence            3455664 4777766331        345666667 88888888887653   55663 56777888887776544 666


Q ss_pred             cCh-hhhccCCccEEecCCCcchhccc-hhhhccCCCcEEeccCCccccccccc-cccccccccc
Q 002129          127 LPE-SVSKLYNLHSLLLEDCDRLEKLC-ADMGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTL  188 (962)
Q Consensus       127 lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L  188 (962)
                      ++. .|..+.+|+.+.+..  ....++ ..+..+.+|+.+.+..+  +..+... |. -.+|+.+
T Consensus       128 I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i  187 (394)
T 4gt6_A          128 IDSEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQI  187 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEE
T ss_pred             ehhhhhhhhcccccccccc--eeeeecccceecccccccccccce--eeEecccccc-ccceeEE
Confidence            654 477888888888865  244444 34677888888887655  4444443 33 2445544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.95  E-value=6e-06  Score=76.83  Aligned_cols=95  Identities=17%  Similarity=0.250  Sum_probs=56.6

Q ss_pred             cCccCCCCCCccEEEecCCCCcccc--CCCCCCCCCcEEEEcCCCCCCCChhhhhcCC---CCCccEEEecCCCCCCccc
Q 002129          541 LPQSSLSLSSLREIEIYGCRSLVSF--PEVALPSKLKKIEISSCDALKSLPEAWMCDT---NSSLEILEISGCDSLTYIA  615 (962)
Q Consensus       541 ~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~---l~~L~~L~l~~c~~l~~~~  615 (962)
                      +|.....-.+|++|++++|. +++.  ..+..+++|++|++++|..+++.....++..   .++|++|+|++|+.+++-.
T Consensus        53 LP~~~~~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             CCcccCCCceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            34333334568888888876 4432  2345677888888888877766554444221   2467888888877776522


Q ss_pred             --CCCCCCCCceEEecccCCCcc
Q 002129          616 --GVQLPPSLKRLKICHCDNIRT  636 (962)
Q Consensus       616 --~~~~~~~L~~L~l~~~~~l~~  636 (962)
                        ....+++|+.|++++|+.+++
T Consensus       132 l~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHhcCCCCCEEECCCCCCCCc
Confidence              112345666666666665544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.92  E-value=9.9e-06  Score=81.73  Aligned_cols=102  Identities=21%  Similarity=0.126  Sum_probs=61.4

Q ss_pred             cCCcccE--EEecCCCCcccCcc----ccCCCcCcEEEcCCCcccccC---hhhhccCCccEEecCCCcchhccchhhhc
Q 002129           87 KLQSLRV--FSLRGYRILELPDS----VGDLRYLRYLNLSGTEIRTLP---ESVSKLYNLHSLLLEDCDRLEKLCADMGN  157 (962)
Q Consensus        87 ~l~~L~~--L~L~~~~i~~lp~~----~~~L~~L~~L~Ls~n~i~~lp---~~i~~L~~L~~L~L~~~~~~~~lp~~i~~  157 (962)
                      ..+.|+.  ++++.|....++..    ..++++|++|+|++|+|+.++   ..++.+++|++|+|++| .+..+ +++..
T Consensus       139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~  216 (267)
T 3rw6_A          139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDK  216 (267)
T ss_dssp             GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGG
T ss_pred             CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhh
Confidence            3444544  55666654433322    245677777777777776543   45667777888888774 34444 33444


Q ss_pred             cC--CCcEEeccCCcccccccc-------cccccccccccce
Q 002129          158 LV--KLHHLKNSNTKSLEEMPV-------GIGRLTCLQTLCS  190 (962)
Q Consensus       158 L~--~L~~L~l~~n~~~~~lp~-------~~~~L~~L~~L~~  190 (962)
                      ++  +|++|++++|.+.+.+|.       .+..+++|+.|+.
T Consensus       217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            44  778888888774444442       2566777777754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.85  E-value=0.0014  Score=71.18  Aligned_cols=43  Identities=9%  Similarity=0.157  Sum_probs=26.1

Q ss_pred             CCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchh
Q 002129          466 QLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAE  514 (962)
Q Consensus       466 ~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~  514 (962)
                      ...+|+++.+.+    ++......+|..+.+|+.++|..  .++.+...
T Consensus        44 ~~~~i~~v~ip~----~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~   86 (379)
T 4h09_A           44 DRDRISEVRVNS----GITSIGEANFNSCYNMTKVTVAS--TVTSIGDG   86 (379)
T ss_dssp             GGGGCSEEEECT----TEEEECTTTTTTCTTCCEEEECT--TCCEECTT
T ss_pred             cccCCEEEEeCC----CccChHHHHhhCCCCCCEEEeCC--cceEechh
Confidence            345677777754    23444566677778888887753  35555444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.84  E-value=9.3e-06  Score=78.02  Aligned_cols=55  Identities=24%  Similarity=0.243  Sum_probs=23.8

Q ss_pred             CCcccEEEecCCCCcc-----cCccccCCCcCcEEEcCCCcccc-----cChhhhccCCccEEec
Q 002129           88 LQSLRVFSLRGYRILE-----LPDSVGDLRYLRYLNLSGTEIRT-----LPESVSKLYNLHSLLL  142 (962)
Q Consensus        88 l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L  142 (962)
                      .+.|++|+|++|.|..     +...+...+.|++|+|++|.|+.     +.+.+...+.|++|++
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRI  128 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence            3444555555444431     22233333444555555554442     2333444444555555

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.75  E-value=6.4e-06  Score=83.09  Aligned_cols=79  Identities=25%  Similarity=0.350  Sum_probs=63.8

Q ss_pred             cCCcccEEEecCCCCccc---CccccCCCcCcEEEcCCCcccccChhhhccC--CccEEecCCCcchhccc-------hh
Q 002129           87 KLQSLRVFSLRGYRILEL---PDSVGDLRYLRYLNLSGTEIRTLPESVSKLY--NLHSLLLEDCDRLEKLC-------AD  154 (962)
Q Consensus        87 ~l~~L~~L~L~~~~i~~l---p~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~--~L~~L~L~~~~~~~~lp-------~~  154 (962)
                      ++++|++|+|++|.|+.+   |..+..+++|++|+|++|.|+.+ ..+..+.  +|++|+|++|...+.+|       ..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            688999999999998865   45677899999999999999987 3355555  99999999976656555       23


Q ss_pred             hhccCCCcEEec
Q 002129          155 MGNLVKLHHLKN  166 (962)
Q Consensus       155 i~~L~~L~~L~l  166 (962)
                      +..+++|+.||-
T Consensus       247 l~~~P~L~~LDg  258 (267)
T 3rw6_A          247 RERFPKLLRLDG  258 (267)
T ss_dssp             HHHCTTCCEESS
T ss_pred             HHHCcccCeECC
Confidence            678999999874

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.70  E-value=1.8e-05  Score=76.01  Aligned_cols=105  Identities=17%  Similarity=0.154  Sum_probs=80.9

Q ss_pred             cCCcccEEEecCC-CCcc-----cCccccCCCcCcEEEcCCCcccc-----cChhhhccCCccEEecCCCcchh----cc
Q 002129           87 KLQSLRVFSLRGY-RILE-----LPDSVGDLRYLRYLNLSGTEIRT-----LPESVSKLYNLHSLLLEDCDRLE----KL  151 (962)
Q Consensus        87 ~l~~L~~L~L~~~-~i~~-----lp~~~~~L~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~~~----~l  151 (962)
                      ..+.|++|+|++| .+..     +...+...++|++|+|++|.|+.     +.+.+...++|++|+|++|..-.    .+
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            7889999999999 8863     45667888999999999999874     45567777899999999975332    24


Q ss_pred             chhhhccCCCcEEec--cCCccccc-----ccccccccccccccceee
Q 002129          152 CADMGNLVKLHHLKN--SNTKSLEE-----MPVGIGRLTCLQTLCSFV  192 (962)
Q Consensus       152 p~~i~~L~~L~~L~l--~~n~~~~~-----lp~~~~~L~~L~~L~~~~  192 (962)
                      .+.+...++|++|++  ++|. ++.     +...+...++|++|++..
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~  160 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHF  160 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccC
Confidence            566788899999999  8888 443     233455668888887644

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.36  E-value=0.0038  Score=67.76  Aligned_cols=63  Identities=14%  Similarity=0.104  Sum_probs=36.7

Q ss_pred             ccCCCCCCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeeccc
Q 002129          459 LAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSY  534 (962)
Q Consensus       459 ~~~~~~~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~  534 (962)
                      +...++..+.+|+++.+.++ ++.+   ...+|..+ +|+.+.+.  ++++.+....+    ..  .+|+.+.+.+
T Consensus        60 Ig~~aF~~C~~L~~I~lp~~-v~~I---g~~aF~~c-~l~~i~~~--~~l~~I~~~aF----~~--~~L~~i~lp~  122 (379)
T 4h09_A           60 IGEANFNSCYNMTKVTVAST-VTSI---GDGAFADT-KLQSYTGM--ERVKKFGDYVF----QG--TDLDDFEFPG  122 (379)
T ss_dssp             ECTTTTTTCTTCCEEEECTT-CCEE---CTTTTTTC-CCCEEEEC--TTCCEECTTTT----TT--CCCSEEECCT
T ss_pred             hHHHHhhCCCCCCEEEeCCc-ceEe---chhhhcCC-CCceEECC--ceeeEecccee----cc--CCcccccCCC
Confidence            34456788999999999753 4444   45556665 67776664  34555444321    11  3456665543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.48  E-value=0.0038  Score=55.26  Aligned_cols=53  Identities=19%  Similarity=0.226  Sum_probs=39.5

Q ss_pred             cEEEecCCCCc--ccCccccCCCcCcEEEcCCCcccccChh-hhccCCccEEecCCCc
Q 002129           92 RVFSLRGYRIL--ELPDSVGDLRYLRYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCD  146 (962)
Q Consensus        92 ~~L~L~~~~i~--~lp~~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~  146 (962)
                      .+++.++++++  .+|..+.  .+|++|+|++|+|+.+|.. |..+.+|++|+|++|.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            36788888887  7876543  3578888888888888754 6777888888887753

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.53  E-value=0.043  Score=48.40  Aligned_cols=53  Identities=15%  Similarity=0.252  Sum_probs=44.1

Q ss_pred             cEEEcCCCccc--ccChhhhccCCccEEecCCCcchhccchh-hhccCCCcEEeccCCc
Q 002129          115 RYLNLSGTEIR--TLPESVSKLYNLHSLLLEDCDRLEKLCAD-MGNLVKLHHLKNSNTK  170 (962)
Q Consensus       115 ~~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~n~  170 (962)
                      .+++.+++.++  .+|..+.  .+|++|+|++ |.+..+|.+ |..+.+|+.|+|++|.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence            47899999998  8987543  4799999999 567788765 7889999999999997

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.11  E-value=0.045  Score=51.79  Aligned_cols=83  Identities=17%  Similarity=0.165  Sum_probs=52.0

Q ss_pred             cCCcccEEEecCC-CCcc-----cCccccCCCcCcEEEcCCCcccc-----cChhhhccCCccEEecCCCcchh----cc
Q 002129           87 KLQSLRVFSLRGY-RILE-----LPDSVGDLRYLRYLNLSGTEIRT-----LPESVSKLYNLHSLLLEDCDRLE----KL  151 (962)
Q Consensus        87 ~l~~L~~L~L~~~-~i~~-----lp~~~~~L~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~~~----~l  151 (962)
                      .-+.|+.|+|+++ .|..     +-+.+..-+.|+.|+|++|.|++     |.+.+..-+.|++|+|++|..-.    .+
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            4567788888775 6652     34556666778888888887762     33445566778888888753222    12


Q ss_pred             chhhhccCCCcEEeccCC
Q 002129          152 CADMGNLVKLHHLKNSNT  169 (962)
Q Consensus       152 p~~i~~L~~L~~L~l~~n  169 (962)
                      -+.+..-+.|++|+++++
T Consensus       119 a~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHhhCCceeEEECCCC
Confidence            233444566778877754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.05  E-value=0.077  Score=50.20  Aligned_cols=110  Identities=15%  Similarity=0.113  Sum_probs=75.6

Q ss_pred             cCCCceeEEeeccccCCCCCCCCcc----cccccccCCcccEEEecCCCCcc-----cCccccCCCcCcEEEcCCCcccc
Q 002129           56 YDIQHLRTFLPVILSNSKPGYLAPS----MLPKLLKLQSLRVFSLRGYRILE-----LPDSVGDLRYLRYLNLSGTEIRT  126 (962)
Q Consensus        56 ~~~~~Lr~L~l~~~~~~~~~~~~~~----~~~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~Ls~n~i~~  126 (962)
                      ..-+.|+.|.+..+..     +...    +-..+..-+.|+.|+|++|.|..     +.+.+..-+.|++|+|++|.|+.
T Consensus        38 ~~n~~L~~L~L~~nn~-----igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKR-----VSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             TTCSSCCEEECTTCCS-----SCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             hcCCCccEEECCCCCC-----CCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            4567888888754311     1111    11222255789999999999973     34556677899999999999973


Q ss_pred             -----cChhhhccCCccEEecCCCc--chh-----ccchhhhccCCCcEEeccCCc
Q 002129          127 -----LPESVSKLYNLHSLLLEDCD--RLE-----KLCADMGNLVKLHHLKNSNTK  170 (962)
Q Consensus       127 -----lp~~i~~L~~L~~L~L~~~~--~~~-----~lp~~i~~L~~L~~L~l~~n~  170 (962)
                           |-+.+..-+.|+.|+|++|.  .++     .+-+.+..-+.|+.|+++.+.
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence                 34456667789999998642  233     234456667899999998776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	962
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 32/230 (13%), Positives = 68/230 (29%), Gaps = 12/230 (5%)

Query: 104 LPDSVGDL--RYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCD-RLEKLCADMGNLVK 160
            PD  G L  + +       + +          + +  + L +    +  L   +    K
Sbjct: 13  HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 72

Query: 161 LHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLE 220
           L +L     +  + +   + + + L  L        S   L+          + C    E
Sbjct: 73  LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-------LLSSCSRLDE 125

Query: 221 NVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGY 280
                      +  +            L  S  R+   +  +  +++   NL    +   
Sbjct: 126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 185

Query: 281 GGMKFPTWLGDSSFSKLVTLKFKNCDMCT--ALPSVGQLPSLKHLTVRGM 328
             +K   +      + L  L    C       L  +G++P+LK L V G+
Sbjct: 186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 35/248 (14%), Positives = 71/248 (28%), Gaps = 10/248 (4%)

Query: 77  LAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEI--RTLPESVSKL 134
           L P +  +LL    +  F      + +          +++++LS + I   TL   +S+ 
Sbjct: 12  LHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 70

Query: 135 YNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVG 194
             L +L LE     + +   +     L  L  S      E  +     +C +     +  
Sbjct: 71  SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 130

Query: 195 KDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSR 254
               +       +  +  T+   NL   +  +   D     +           ++   S 
Sbjct: 131 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR------RCPNLVHLDLSD 184

Query: 255 EAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPS- 313
               +            L+   +     +   T L       L TL+         L   
Sbjct: 185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL 244

Query: 314 VGQLPSLK 321
              LP L+
Sbjct: 245 KEALPHLQ 252

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 39/259 (15%), Positives = 83/259 (32%), Gaps = 15/259 (5%)

Query: 69  LSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLP 128
           L N+K   +       L  L +L + + +  +I   P +   L  L  L LS  +++ LP
Sbjct: 38  LQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--PGAFAPLVKLERLYLSKNQLKELP 95

Query: 129 ESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188
           E    +      L    + + K+   + N +    +    T  L+   +  G    ++ L
Sbjct: 96  EK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 189 CSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTL 248
               +   + + + +  L   L   L +        I   + A L    NL +L L +  
Sbjct: 153 SYIRIADTNITTIPQ-GLPPSLT-ELHLDG----NKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 249 YGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMC 308
             +    +      L  L  + N       G    K+   +     + +  +     +  
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV-YLHNNNISAI---GSNDF 262

Query: 309 TALPSVGQLPSLKHLTVRG 327
                  +  S   +++  
Sbjct: 263 CPPGYNTKKASYSGVSLFS 281

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 92  RVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKL 151
           RV  L    +  L   +  L  + +L+LS   +R LP +++ L  L  L   D       
Sbjct: 1   RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 152 CADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188
                  ++   L N+  +        +     L  L
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAA-IQPLVSCPRLVLL 95

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.003
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 82  LPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLL 141
             +       R   LRGY+I  + +    L     ++ S  EIR L      L  L +LL
Sbjct: 11  AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLL 69

Query: 142 LEDC 145
           + + 
Sbjct: 70  VNNN 73

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 0.003
 Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 80  SMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHS 139
           S +  +  L  L+       ++ ++  S+ +L  + +L+    +I  L   ++ L  +  
Sbjct: 320 SDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQ 377

Query: 140 LLLED 144
           L L D
Sbjct: 378 LGLND 382

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 88  LQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDR 147
             SL   ++   +++ELP        L  L  S   +  +PE      NL  L +E    
Sbjct: 283 PPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPEL---PQNLKQLHVEYN-P 335

Query: 148 LEKLCADMGNLVKLH 162
           L +      ++  L 
Sbjct: 336 LREFPDIPESVEDLR 350

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	962
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.8
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.76
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.75
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.73
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.71
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.71
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.67
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.66
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.65
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.64
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.58
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.47
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.46
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.45
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.44
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.43
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.36
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.35
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.35
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.35
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.34
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.34
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.31
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.27
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.2
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.16
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.13
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.01
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.0
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.89
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.88
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.87
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.43
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.88
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.71
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.54
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.4
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.81
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.25

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=1.1e-19  Score=198.97  Aligned_cols=85  Identities=19%  Similarity=0.354  Sum_probs=72.7

Q ss_pred             cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEec
Q 002129           87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKN  166 (962)
Q Consensus        87 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l  166 (962)
                      .+.+|++|++++++|+.+ ++++.+++|++|+|++|+|+++|. ++++++|++|++++| .+..++ .++.+++|+.|++
T Consensus        42 ~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n-~i~~i~-~l~~l~~L~~L~~  117 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADIT-PLANLTNLTGLTL  117 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEEC
T ss_pred             HhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccc-cccccc-ccccccccccccc
Confidence            677899999999999988 578899999999999999999975 999999999999996 455555 4889999999999


Q ss_pred             cCCccccccc
Q 002129          167 SNTKSLEEMP  176 (962)
Q Consensus       167 ~~n~~~~~lp  176 (962)
                      +++. ...++
T Consensus       118 ~~~~-~~~~~  126 (384)
T d2omza2         118 FNNQ-ITDID  126 (384)
T ss_dssp             CSSC-CCCCG
T ss_pred             cccc-ccccc
Confidence            9887 54444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=2.3e-18  Score=188.26  Aligned_cols=190  Identities=21%  Similarity=0.191  Sum_probs=91.1

Q ss_pred             ccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccccCCCcccc
Q 002129          710 LDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQ  789 (962)
Q Consensus       710 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~  789 (962)
                      +..+++++.+++++|...+..|  +...++|++|++++| .++.++ ....+++|+.|++++|... .++ .+..+++|+
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~-~~~-~~~~~~~L~  266 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQIS-NLA-PLSGLTKLT  266 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCC-CCG-GGTTCTTCS
T ss_pred             cccccccceeeccCCccCCCCc--ccccCCCCEEECCCC-CCCCcc-hhhcccccchhccccCccC-CCC-cccccccCC
Confidence            3444455555555544333221  233445555555554 233332 1223445555555555422 222 244455555


Q ss_pred             eeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccceeecccCCCCCccCCCCCCCCCCCccccC
Q 002129          790 ELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPL  869 (962)
Q Consensus       790 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  869 (962)
                      +|+++++ .+..++....++.++.+.+++|.....      ..+..+++++.|++++|..  ..++          .+..
T Consensus       267 ~L~l~~~-~l~~~~~~~~~~~l~~l~~~~n~l~~~------~~~~~~~~l~~L~ls~n~l--~~l~----------~l~~  327 (384)
T d2omza2         267 ELKLGAN-QISNISPLAGLTALTNLELNENQLEDI------SPISNLKNLTYLTLYFNNI--SDIS----------PVSS  327 (384)
T ss_dssp             EEECCSS-CCCCCGGGTTCTTCSEEECCSSCCSCC------GGGGGCTTCSEEECCSSCC--SCCG----------GGGG
T ss_pred             EeeccCc-ccCCCCccccccccccccccccccccc------cccchhcccCeEECCCCCC--CCCc----------cccc
Confidence            5555554 333333333445555555555544332      2245556666666666421  1111          1234


Q ss_pred             CCccceEeeccCCCCcccccccccCCCcCeEeccCCCCCccCCCCCCccccceeeccC
Q 002129          870 PASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINR  927 (962)
Q Consensus       870 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~  927 (962)
                      +++|++|++++| .++.++ .+.++++|++|++++| +++.+++-+-.++|++|++++
T Consensus       328 l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         328 LTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             CTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCC
T ss_pred             CCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCC-cCCCChhhccCCCCCEeeCCC
Confidence            566666666664 555555 3566666666666664 455554322235666666654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.76  E-value=4.9e-19  Score=186.96  Aligned_cols=247  Identities=15%  Similarity=0.159  Sum_probs=136.5

Q ss_pred             ceeEEeeccccCCCCCCCCcccccccccCCcccEEEecC-CCCc-ccCccccCCCcCcEEEcCCCcccccC-hhhhccCC
Q 002129           60 HLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRG-YRIL-ELPDSVGDLRYLRYLNLSGTEIRTLP-ESVSKLYN  136 (962)
Q Consensus        60 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~i~-~lp~~~~~L~~L~~L~Ls~n~i~~lp-~~i~~L~~  136 (962)
                      +++.|.+.++.-    .-...+|+.+.++++|++|+|++ |++. .+|..|++|++|++|+|++|++..++ ..+..+.+
T Consensus        51 ~v~~L~L~~~~l----~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          51 RVNNLDLSGLNL----PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CEEEEEEECCCC----SSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEEECCCCCC----CCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhh
Confidence            566666655421    00124566777888888888876 5666 67888888888888888888887654 45778888


Q ss_pred             ccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccc-cccceeeecCCCCCCcccccccccccceeE
Q 002129          137 LHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCL-QTLCSFVVGKDSGSGLRELKLLTQLRGTLC  215 (962)
Q Consensus       137 L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L-~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~  215 (962)
                      |+++++++|.....+|..++++++|+++++++|.+.+.+|..++.+.++ +.+...... ..+.....+..+....  +.
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~-l~~~~~~~~~~l~~~~--l~  203 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANLNLAF--VD  203 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGGCCCSE--EE
T ss_pred             hcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccc-cccccccccccccccc--cc
Confidence            8888888877777778888888888888888887666777777777665 333221111 0111112222221110  11


Q ss_pred             EecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCC-CCCccccCCCC
Q 002129          216 ISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGM-KFPTWLGDSSF  294 (962)
Q Consensus       216 ~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l  294 (962)
                      ..   . .......+..+..+..++.+++..+....          .+..+...++|+.|++++|... .+|.++.  .+
T Consensus       204 l~---~-~~~~~~~~~~~~~~~~l~~l~~~~~~l~~----------~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~--~L  267 (313)
T d1ogqa_         204 LS---R-NMLEGDASVLFGSDKNTQKIHLAKNSLAF----------DLGKVGLSKNLNGLDLRNNRIYGTLPQGLT--QL  267 (313)
T ss_dssp             CC---S-SEEEECCGGGCCTTSCCSEEECCSSEECC----------BGGGCCCCTTCCEEECCSSCCEECCCGGGG--GC
T ss_pred             cc---c-ccccccccccccccccccccccccccccc----------cccccccccccccccCccCeecccCChHHh--CC
Confidence            00   0 01112223334445555555554332111          1122333445555555555544 4555554  35


Q ss_pred             CCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCC
Q 002129          295 SKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMS  329 (962)
Q Consensus       295 ~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~  329 (962)
                      ++|++|+|++|.+.+.+|.++.+++|+.+++++|+
T Consensus       268 ~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         268 KFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             TTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             CCCCEEECcCCcccccCCCcccCCCCCHHHhCCCc
Confidence            55555555555544444544555555555555443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=2.6e-17  Score=172.88  Aligned_cols=86  Identities=26%  Similarity=0.354  Sum_probs=52.3

Q ss_pred             cccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhccchhhhccCCCcEEeccC
Q 002129           90 SLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSN  168 (962)
Q Consensus        90 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~  168 (962)
                      ..+++|.++.+++.+|..+.  +++++|+|++|+|+.+|+ +|.++++|++|++++|......|..|..+++|++|++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            44556666666666666553  456666666666666664 366666666666666543333345566666666666666


Q ss_pred             Cccccccccc
Q 002129          169 TKSLEEMPVG  178 (962)
Q Consensus       169 n~~~~~lp~~  178 (962)
                      |+ ++.+|..
T Consensus        89 n~-l~~l~~~   97 (305)
T d1xkua_          89 NQ-LKELPEK   97 (305)
T ss_dssp             SC-CSBCCSS
T ss_pred             Cc-cCcCccc
Confidence            66 5556544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.73  E-value=1.8e-18  Score=182.66  Aligned_cols=82  Identities=16%  Similarity=0.194  Sum_probs=39.5

Q ss_pred             hhcceeecccc-cCccccCccCCCCCCccEEEecCCCCccccCC-CCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccE
Q 002129          525 ELLEYLRLSYC-EGLVKLPQSSLSLSSLREIEIYGCRSLVSFPE-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEI  602 (962)
Q Consensus       525 ~~L~~L~ls~~-~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~  602 (962)
                      ++|++|++++| ...+.+|..+.++++|++|++++|......+. ...+.+|+.+++++|.....+|..+  ..+++|+.
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l--~~l~~L~~  153 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI--SSLPNLVG  153 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhh--ccCcccce
Confidence            55555555542 23334555555555555555555433332221 3334555555555555444444433  44455555


Q ss_pred             EEecCC
Q 002129          603 LEISGC  608 (962)
Q Consensus       603 L~l~~c  608 (962)
                      +++++|
T Consensus       154 l~l~~n  159 (313)
T d1ogqa_         154 ITFDGN  159 (313)
T ss_dssp             EECCSS
T ss_pred             eecccc
Confidence            555553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.71  E-value=2e-15  Score=162.42  Aligned_cols=90  Identities=26%  Similarity=0.300  Sum_probs=66.8

Q ss_pred             CcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccC
Q 002129           89 QSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSN  168 (962)
Q Consensus        89 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~  168 (962)
                      .++++|||++++++.+|+.   .++|++|+|++|+|+++|+.+   .+|+.|++++| .+..+++-   ...|++|++++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n-~l~~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNN-NLKALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSS-CCSCCCSC---CTTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhc-ccchhhhh---ccccccccccc
Confidence            3688899999999888864   467889999999999888754   47888888884 45555421   14688999998


Q ss_pred             Ccccccccccccccccccccce
Q 002129          169 TKSLEEMPVGIGRLTCLQTLCS  190 (962)
Q Consensus       169 n~~~~~lp~~~~~L~~L~~L~~  190 (962)
                      |. +..+|. ++.+++|++|++
T Consensus       108 n~-l~~lp~-~~~l~~L~~L~l  127 (353)
T d1jl5a_         108 NQ-LEKLPE-LQNSSFLKIIDV  127 (353)
T ss_dssp             SC-CSSCCC-CTTCTTCCEEEC
T ss_pred             cc-cccccc-hhhhccceeecc
Confidence            88 777774 567777777744

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=3.1e-16  Score=164.49  Aligned_cols=86  Identities=19%  Similarity=0.273  Sum_probs=39.8

Q ss_pred             CCcceEeecCCccccccCccccCCCCccEEEcccCCCcccC-CCCCCCcccccccccccccccccCccccCCCcccceee
Q 002129          714 TSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSS-PEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELR  792 (962)
Q Consensus       714 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~  792 (962)
                      ++|++|++++|......+..+.+++.++.|++++| .+..+ +..+..+++|++|++++|. ++.+|.++..+++|++|+
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L~  248 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVY  248 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEE
T ss_pred             CccCEEECCCCcCCCCChhHhhccccccccccccc-cccccccccccccccceeeeccccc-ccccccccccccCCCEEE
Confidence            44444444444444444444444445555555544 22222 2222234455555555553 344455555555555555


Q ss_pred             cCCCCCCCCC
Q 002129          793 IGKGVALPSL  802 (962)
Q Consensus       793 l~~~~~l~~~  802 (962)
                      +++| .++.+
T Consensus       249 Ls~N-~i~~i  257 (305)
T d1xkua_         249 LHNN-NISAI  257 (305)
T ss_dssp             CCSS-CCCCC
T ss_pred             CCCC-ccCcc
Confidence            5554 34443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.67  E-value=1.5e-14  Score=155.50  Aligned_cols=52  Identities=27%  Similarity=0.251  Sum_probs=37.6

Q ss_pred             CcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCc
Q 002129          112 RYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTK  170 (962)
Q Consensus       112 ~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~  170 (962)
                      .+|++|||+++.++.+|+.   +++|++|++++ +.+.++|+.+   .+|+.|++++|.
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~-N~l~~lp~~~---~~L~~L~l~~n~   89 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASC-NSLTELPELP---QSLKSLLVDNNN   89 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCS-SCCSSCCCCC---TTCCEEECCSSC
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCC-CCCcccccch---hhhhhhhhhhcc
Confidence            3678888888888888863   45778888887 4566777543   467777777776

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.2e-16  Score=160.26  Aligned_cols=62  Identities=18%  Similarity=0.188  Sum_probs=36.1

Q ss_pred             CCCCCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCC
Q 002129          267 KPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMS  329 (962)
Q Consensus       267 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~  329 (962)
                      ..++.++.++++++....+|...+. .+++|++|+|++|.+....+.+..+++|+.|+|++|+
T Consensus       145 ~~l~~l~~l~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         145 TPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TTCTTCCEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cccccchhcccccccccccCccccc-cccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence            3445566666666666555544332 4666777777776655322255566667777776664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=9e-16  Score=156.83  Aligned_cols=176  Identities=18%  Similarity=0.134  Sum_probs=107.1

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE  604 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  604 (962)
                      +++++|+|++|......+..+..+++|++|++++| .++.++..+.+++|++|++++|. +...+..+  ..+++|+.|+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQ-LQSLPLLG--QTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCSSC-CSSCCCCT--TTCTTCCEEE
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccccccccccccccccccc-cccccccc--cccccccccc
Confidence            56777777776654433456777888888888886 56667766777778888888776 44444433  5566677777


Q ss_pred             ecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccc
Q 002129          605 ISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE  684 (962)
Q Consensus       605 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~  684 (962)
                      ++++... .++...+                                                                 
T Consensus       107 l~~~~~~-~~~~~~~-----------------------------------------------------------------  120 (266)
T d1p9ag_         107 VSFNRLT-SLPLGAL-----------------------------------------------------------------  120 (266)
T ss_dssp             CCSSCCC-CCCSSTT-----------------------------------------------------------------
T ss_pred             ccccccc-eeecccc-----------------------------------------------------------------
Confidence            6664211 1111000                                                                 


Q ss_pred             cCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccc
Q 002129          685 VGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKL  764 (962)
Q Consensus       685 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L  764 (962)
                       ..+ .++++|++++|.+....+..+..+++|+.+++++|++.+..+..+..+++|++|+|++| .++.+|.+++.+++|
T Consensus       121 -~~l-~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L  197 (266)
T d1p9ag_         121 -RGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLL  197 (266)
T ss_dssp             -TTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCC
T ss_pred             -ccc-cccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccC-CCcccChhHCCCCCC
Confidence             000 45666666666655555555666666666666666655555555666666666666666 455666655555556


Q ss_pred             ccccccccc
Q 002129          765 AMLAIYNCK  773 (962)
Q Consensus       765 ~~L~l~~c~  773 (962)
                      +.|++++|+
T Consensus       198 ~~L~L~~Np  206 (266)
T d1p9ag_         198 PFAFLHGNP  206 (266)
T ss_dssp             SEEECCSCC
T ss_pred             CEEEecCCC
Confidence            666555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.9e-16  Score=161.63  Aligned_cols=203  Identities=13%  Similarity=0.083  Sum_probs=129.4

Q ss_pred             hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCC--CCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccE
Q 002129          525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPE--VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEI  602 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~  602 (962)
                      +++++|+|++|+..+.-+..+.++++|++|+++++. ++.++.  ....+.++.+.+..+..+..++...+ ..+++|++
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~l~~L~~  109 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF-HGLGRLHT  109 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT-TTCTTCCE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhcccccccccccccc-ccccccccccccccccccccccccccccccchhh-cccccCCE
Confidence            566777777766533333456777777777777643 333332  33356666666666665666654444 56666666


Q ss_pred             EEecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccc
Q 002129          603 LEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLES  682 (962)
Q Consensus       603 L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~  682 (962)
                      |++++|.. ..++....                                                               
T Consensus       110 L~l~~n~~-~~~~~~~~---------------------------------------------------------------  125 (284)
T d1ozna_         110 LHLDRCGL-QELGPGLF---------------------------------------------------------------  125 (284)
T ss_dssp             EECTTSCC-CCCCTTTT---------------------------------------------------------------
T ss_pred             EecCCccc-cccccccc---------------------------------------------------------------
Confidence            66666431 11111000                                                               


Q ss_pred             cccCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcc
Q 002129          683 LEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCA  762 (962)
Q Consensus       683 l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~  762 (962)
                          ..+.+|+.+++++|.+.+..+.+|..+++|+.|++++|.+....+..+.++++|+++++++|......|..+..++
T Consensus       126 ----~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~  201 (284)
T d1ozna_         126 ----RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG  201 (284)
T ss_dssp             ----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             ----chhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhh
Confidence                0015677777777776665566777777888888887776655566677788888888887755555566666677


Q ss_pred             cccccccccccccccCccccCCCcccceeecCCCC
Q 002129          763 KLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGV  797 (962)
Q Consensus       763 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~  797 (962)
                      +|+.|++++|......+..++.+++|++|++++|+
T Consensus       202 ~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             hcccccccccccccccccccccccccCEEEecCCC
Confidence            88888888877655555677788888888888775

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.8e-14  Score=148.94  Aligned_cols=131  Identities=17%  Similarity=0.150  Sum_probs=100.9

Q ss_pred             cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCC-CCCcccccccc
Q 002129          690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLAMLA  768 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~~L~  768 (962)
                      ++|++|++++|......+..+...++|+.+++++|.+.+..+..+..+++|++|++++| .++.++.. +..+++|+.++
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~  183 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLL  183 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEE
T ss_pred             ccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccC-cccccchhhhccccccchhh
Confidence            68888999988877767777888899999999998876655677888889999999988 56665544 45578899999


Q ss_pred             cccccccccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhh
Q 002129          769 IYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEI  822 (962)
Q Consensus       769 l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~  822 (962)
                      +++|......|..|.++++|++|++++|. +..++..  +.+++|++|++++|+..
T Consensus       184 l~~N~l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         184 LHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hhhccccccChhHhhhhhhcccccccccc-cccccccccccccccCEEEecCCCCC
Confidence            99998777778888899999999998884 4444432  45567777777776543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.47  E-value=7.7e-14  Score=136.24  Aligned_cols=96  Identities=22%  Similarity=0.363  Sum_probs=72.6

Q ss_pred             cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEec
Q 002129           87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKN  166 (962)
Q Consensus        87 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l  166 (962)
                      .+..|+.|++++|.++.++ ++..+++|++|+|++|+|+.++. ++.+++|++|++++| .+..+| .+..+++|+.|++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc-cccCccccccccccc-cccccc-ccccccccccccc
Confidence            4667888888888888775 47888889999999888888864 788888899998885 566676 5888888888888


Q ss_pred             cCCccccccccccccccccccc
Q 002129          167 SNTKSLEEMPVGIGRLTCLQTL  188 (962)
Q Consensus       167 ~~n~~~~~lp~~~~~L~~L~~L  188 (962)
                      ++|. ...++ .+..+++++.+
T Consensus       120 ~~~~-~~~~~-~l~~l~~l~~l  139 (210)
T d1h6ta2         120 EHNG-ISDIN-GLVHLPQLESL  139 (210)
T ss_dssp             TTSC-CCCCG-GGGGCTTCCEE
T ss_pred             cccc-ccccc-ccccccccccc
Confidence            8887 44433 35555555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=1.2e-13  Score=133.75  Aligned_cols=96  Identities=21%  Similarity=0.353  Sum_probs=66.8

Q ss_pred             cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEec
Q 002129           87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKN  166 (962)
Q Consensus        87 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l  166 (962)
                      .+.++++|++++|+++.+ +.++.+++|++|++++|+++.++. ++++++|++|++++| ....+| .++++++|+.|++
T Consensus        38 ~l~~l~~L~l~~~~i~~l-~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADIT-PLANLTNLTGLTL  113 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEEC
T ss_pred             HhcCCCEEECCCCCCCCc-cccccCCCcCcCccccccccCccc-ccCCccccccccccc-cccccc-ccccccccccccc
Confidence            567788888888888877 357778888888888888887764 778888888888874 455554 4777888888888


Q ss_pred             cCCccccccccccccccccccc
Q 002129          167 SNTKSLEEMPVGIGRLTCLQTL  188 (962)
Q Consensus       167 ~~n~~~~~lp~~~~~L~~L~~L  188 (962)
                      +++. ...+ ..+..+++|+.|
T Consensus       114 ~~~~-~~~~-~~~~~l~~L~~L  133 (199)
T d2omxa2         114 FNNQ-ITDI-DPLKNLTNLNRL  133 (199)
T ss_dssp             CSSC-CCCC-GGGTTCTTCSEE
T ss_pred             cccc-cccc-cccchhhhhHHh
Confidence            7776 3332 224444444444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9.9e-14  Score=139.63  Aligned_cols=106  Identities=18%  Similarity=0.277  Sum_probs=71.8

Q ss_pred             cccccccccCCcccEEEecCCCCcccCc-cccCCCcCcEEEcCCCcccc-cC-hhhhccCCccEEecCCCcchhccc-hh
Q 002129           79 PSMLPKLLKLQSLRVFSLRGYRILELPD-SVGDLRYLRYLNLSGTEIRT-LP-ESVSKLYNLHSLLLEDCDRLEKLC-AD  154 (962)
Q Consensus        79 ~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~n~i~~-lp-~~i~~L~~L~~L~L~~~~~~~~lp-~~  154 (962)
                      .++|++++  +++++|++++|.|+.+|. .|.++++|++|++++|.+.. +| ..|..+++++++++..++.+...+ ..
T Consensus        21 ~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~   98 (242)
T d1xwdc1          21 TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA   98 (242)
T ss_dssp             SSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS
T ss_pred             CCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc
Confidence            45666554  467888888888887765 57888888888888887764 43 347788888888876655554444 45


Q ss_pred             hhccCCCcEEeccCCccccccccccccccccccc
Q 002129          155 MGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL  188 (962)
Q Consensus       155 i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L  188 (962)
                      +.++++|++|++++|. +...+. +..+.+++.+
T Consensus        99 ~~~l~~L~~l~l~~~~-l~~~~~-~~~~~~l~~l  130 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTG-IKHLPD-VHKIHSLQKV  130 (242)
T ss_dssp             EECCTTCCEEEEESCC-CCSCCC-CTTTCBSSCE
T ss_pred             ccccccccccccchhh-hccccc-cccccccccc
Confidence            7788888888888876 444432 3344444444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=5.5e-14  Score=139.62  Aligned_cols=188  Identities=18%  Similarity=0.230  Sum_probs=104.1

Q ss_pred             cCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccccCCCcccce
Q 002129          711 DNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQE  790 (962)
Q Consensus       711 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~  790 (962)
                      ..+.+|+.|++.+|.+. .+ +++..+++|++|++++|. +..++. +..+++|+.+++++|. .+.++ .+..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~-~l-~~l~~l~~L~~L~ls~n~-i~~~~~-l~~l~~l~~l~~~~n~-~~~i~-~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCC-CC-TTGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCC-cc-hhHhcCCCCcEeecCCce-eecccc-cccccccccccccccc-ccccc-cccccccccc
Confidence            34455555555555432 23 235555666666666552 333221 2334456666666554 23332 3556666666


Q ss_pred             eecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccceeecccCCCCCccCCCCCCCCCCCccccCC
Q 002129          791 LRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLP  870 (962)
Q Consensus       791 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  870 (962)
                      +++++|. ...++.....+.++.+.++++.....      ..+...++|++|++++|..  ..+          ..+..+
T Consensus       112 l~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~L~~L~l~~n~~--~~~----------~~l~~l  172 (227)
T d1h6ua2         112 LDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNI------SPLAGLTNLQYLSIGNAQV--SDL----------TPLANL  172 (227)
T ss_dssp             EECTTSC-CCCCGGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCCEEECCSSCC--CCC----------GGGTTC
T ss_pred             ccccccc-ccccchhccccchhhhhchhhhhchh------hhhcccccccccccccccc--ccc----------hhhccc
Confidence            6666653 23333333445666666666554332      2245667777777777531  111          113456


Q ss_pred             CccceEeeccCCCCcccccccccCCCcCeEeccCCCCCccCCCCCCccccceeecc
Q 002129          871 ASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSIN  926 (962)
Q Consensus       871 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~  926 (962)
                      ++|++|+++++ .++.++. +.++++|++|++++| +++.++.-+-.++|+.|+++
T Consensus       173 ~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         173 SKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             TTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEE
T ss_pred             ccceecccCCC-ccCCChh-hcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEee
Confidence            77777777774 6777654 667778888888876 57777653334677777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=3.3e-13  Score=133.89  Aligned_cols=188  Identities=15%  Similarity=0.191  Sum_probs=92.1

Q ss_pred             CCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCCCCCCCCce
Q 002129          546 LSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKR  625 (962)
Q Consensus       546 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~  625 (962)
                      ..+.+|++|++.+|. +++++.+..+++|++|++++|. +..+.. +  ..+++|+++++++|. ++.++....+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~-i~~l~~l~~l~~L~~L~ls~n~-i~~~~~-l--~~l~~l~~l~~~~n~-~~~i~~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQ-ITDLAP-L--KNLTKITELELSGNP-LKNVSAIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSC-CCCCGG-G--TTCCSCCEEECCSCC-CSCCGGGTTCTTCCE
T ss_pred             HHcCCcCEEECCCCC-CCcchhHhcCCCCcEeecCCce-eecccc-c--ccccccccccccccc-ccccccccccccccc
Confidence            345566666666543 4445555556666666666665 333332 1  555666666666542 333333333445555


Q ss_pred             EEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCchh
Q 002129          626 LKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLES  705 (962)
Q Consensus       626 L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~  705 (962)
                      +.++++......+                                +.               ..+.++.+.++.+.....
T Consensus       112 l~l~~~~~~~~~~--------------------------------~~---------------~~~~~~~l~~~~~~~~~~  144 (227)
T d1h6ua2         112 LDLTSTQITDVTP--------------------------------LA---------------GLSNLQVLYLDLNQITNI  144 (227)
T ss_dssp             EECTTSCCCCCGG--------------------------------GT---------------TCTTCCEEECCSSCCCCC
T ss_pred             cccccccccccch--------------------------------hc---------------cccchhhhhchhhhhchh
Confidence            5544442111000                                00               004455555555544332


Q ss_pred             hhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccccCCC
Q 002129          706 IAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNL  785 (962)
Q Consensus       706 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l  785 (962)
                      .+  +...++|+.|++++|.....  ..++++++|++|++++| .++.++. +..+++|++|++++|+ +..++ .++++
T Consensus       145 ~~--~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N~-lt~i~-~l~~l  216 (227)
T d1h6ua2         145 SP--LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQ-ISDVS-PLANT  216 (227)
T ss_dssp             GG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSC-CCBCG-GGTTC
T ss_pred             hh--hccccccccccccccccccc--hhhcccccceecccCCC-ccCCChh-hcCCCCCCEEECcCCc-CCCCc-ccccC
Confidence            22  44556666666666554321  22555666666666666 4444432 3334555555665554 33343 25555


Q ss_pred             cccceeecC
Q 002129          786 KSLQELRIG  794 (962)
Q Consensus       786 ~~L~~L~l~  794 (962)
                      ++|++|+++
T Consensus       217 ~~L~~L~ls  225 (227)
T d1h6ua2         217 SNLFIVTLT  225 (227)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCCEEEee
Confidence            666666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.4e-12  Score=129.25  Aligned_cols=99  Identities=19%  Similarity=0.171  Sum_probs=58.4

Q ss_pred             hhcceeecccccCccccC-ccCCCCCCccEEEecCCCCccccCC--CCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCcc
Q 002129          525 ELLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYGCRSLVSFPE--VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLE  601 (962)
Q Consensus       525 ~~L~~L~ls~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~  601 (962)
                      +++++|++++|.. +.+| ..|.++++|++|++++|.....++.  +..++.++++.+..+..+..++...+ ..+++|+
T Consensus        29 ~~l~~L~Ls~n~i-~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~-~~l~~L~  106 (242)
T d1xwdc1          29 RNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF-QNLPNLQ  106 (242)
T ss_dssp             SCCSEEEEESCCC-CEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE-ECCTTCC
T ss_pred             CCCCEEECcCCcC-CccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc-ccccccc
Confidence            4566666666653 3343 3466777777777777766555543  34466777777766655655554444 5677777


Q ss_pred             EEEecCCCCCCcccCCCCCCCCceE
Q 002129          602 ILEISGCDSLTYIAGVQLPPSLKRL  626 (962)
Q Consensus       602 ~L~l~~c~~l~~~~~~~~~~~L~~L  626 (962)
                      +++++++ .++..+......+++.+
T Consensus       107 ~l~l~~~-~l~~~~~~~~~~~l~~l  130 (242)
T d1xwdc1         107 YLLISNT-GIKHLPDVHKIHSLQKV  130 (242)
T ss_dssp             EEEEESC-CCCSCCCCTTTCBSSCE
T ss_pred             ccccchh-hhccccccccccccccc
Confidence            7777774 34444433333333333

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=7.1e-13  Score=116.00  Aligned_cols=95  Identities=26%  Similarity=0.319  Sum_probs=51.5

Q ss_pred             cEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcc
Q 002129           92 RVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKS  171 (962)
Q Consensus        92 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~  171 (962)
                      |+|+|++|+++.++ .++.+++|++|++++|+|+.+|+.++.+++|++|++++ +.+..+| +++.+++|++|++++|+ 
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~-~~~~l~~L~~L~l~~N~-   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCNNR-   76 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCSSC-
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccc-ccccccC-ccccccccCeEECCCCc-
Confidence            45555665555554 35555556666666665555555555555666666655 3444444 35555556666665555 


Q ss_pred             cccccc--cccccccccccce
Q 002129          172 LEEMPV--GIGRLTCLQTLCS  190 (962)
Q Consensus       172 ~~~lp~--~~~~L~~L~~L~~  190 (962)
                      +..+|.  .++.+++|++|++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l   97 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNL   97 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEEC
T ss_pred             cCCCCCchhhcCCCCCCEEEC
Confidence            444432  2455555555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=9.8e-13  Score=121.42  Aligned_cols=129  Identities=19%  Similarity=0.140  Sum_probs=102.7

Q ss_pred             ccccCCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChh-
Q 002129           53 GDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPES-  130 (962)
Q Consensus        53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~-  130 (962)
                      +.+.+..++|.|.+.++.       ...++ +++ .+++|++|+|++|.|+.+ +.|..+++|++|++++|+++.+|.. 
T Consensus        12 ~~~~n~~~lr~L~L~~n~-------I~~i~-~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~   82 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYK-------IPVIE-NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL   82 (162)
T ss_dssp             CEEECTTSCEEEECTTSC-------CCSCC-CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred             HhccCcCcCcEEECCCCC-------CCccC-ccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCccc
Confidence            455677789999887764       34444 455 889999999999999988 4689999999999999999998766 


Q ss_pred             hhccCCccEEecCCCcchhccch--hhhccCCCcEEeccCCcccccccc----cccccccccccceee
Q 002129          131 VSKLYNLHSLLLEDCDRLEKLCA--DMGNLVKLHHLKNSNTKSLEEMPV----GIGRLTCLQTLCSFV  192 (962)
Q Consensus       131 i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~n~~~~~lp~----~~~~L~~L~~L~~~~  192 (962)
                      +..+++|++|++++| .+..+++  .+..+++|++|++++|. +...|.    .+..+++|+.|+...
T Consensus        83 ~~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~~  148 (162)
T d1a9na_          83 DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK  148 (162)
T ss_dssp             HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             cccccccccceeccc-cccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCCC
Confidence            578999999999995 5666653  57889999999999998 676664    377888888886443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.3e-13  Score=141.57  Aligned_cols=106  Identities=12%  Similarity=0.223  Sum_probs=45.5

Q ss_pred             CccEEEecCCCCchh-hhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCC--CCCCCccccccc
Q 002129          691 SLKLLLVWGCSKLES-IAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSP--EGGLPCAKLAML  767 (962)
Q Consensus       691 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~--~~~~~~~~L~~L  767 (962)
                      +|++|++++|..... +...+..+++|++|++++|......+..+..+++|++|++++|..++...  .-...+++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            445555554443322 23344455555555555554433333444445555555555554443211  001123455555


Q ss_pred             cccccccccc--Ccccc-CCCcccceeecCCC
Q 002129          768 AIYNCKRLEA--LPKGL-HNLKSLQELRIGKG  796 (962)
Q Consensus       768 ~l~~c~~l~~--~~~~~-~~l~~L~~L~l~~~  796 (962)
                      ++++|..+..  +...+ ...++|+.|++++|
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             ccccccccccccchhhhcccccccchhhhccc
Confidence            5555543321  11111 12345555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.2e-13  Score=141.88  Aligned_cols=211  Identities=14%  Similarity=0.078  Sum_probs=142.5

Q ss_pred             ccCCCCcceEeecCCccccc-cCccccCCCCccEEEcccCCCcccCCCCCCCccccccccccccccccc--CccccCCCc
Q 002129          710 LDNNTSLEKINISGCGNLQT-LPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEA--LPKGLHNLK  786 (962)
Q Consensus       710 ~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~l~  786 (962)
                      .....+|++|++++|..... +...+.++++|++|++++|+.-...+..+..+++|++|++++|..++.  +.....+++
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence            34557899999999876644 455678899999999999954333333445578999999999986653  223346789


Q ss_pred             ccceeecCCCCCCCCCC--C--CCCCCccceEeecCchh-hhHHHHhccccccccCccceeecccCCCCCccCCCCCCCC
Q 002129          787 SLQELRIGKGVALPSLE--E--DGLPTNLHVLLINGNME-IWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDK  861 (962)
Q Consensus       787 ~L~~L~l~~~~~l~~~~--~--~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  861 (962)
                      +|++|++++|..+..-.  .  ...+++|+.|++++|.. .......  ..+..+++|++|++++|.......       
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~--~l~~~~~~L~~L~L~~~~~itd~~-------  192 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS--TLVRRCPNLVHLDLSDSVMLKNDC-------  192 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH--HHHHHCTTCSEEECTTCTTCCGGG-------
T ss_pred             hccccccccccccccccchhhhcccccccchhhhccccccccccccc--ccccccccccccccccccCCCchh-------
Confidence            99999999998765311  1  13457899999998743 2222111  334678999999999974221111       


Q ss_pred             CCCccccCCCccceEeeccCCCCcc-cccccccCCCcCeEeccCCCCCccCCCCCCccccceeeccCChhhHHh
Q 002129          862 GSGTVLPLPASLTYLRIEGFPNLER-LTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIEEK  934 (962)
Q Consensus       862 ~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~l~~~  934 (962)
                        ...+..+++|++|++++|+.+.. -...+.++++|++|++.+|-.-..+.  .++..+..|++ +|..++.+
T Consensus       193 --~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~--~l~~~lp~L~i-~~~~ls~~  261 (284)
T d2astb2         193 --FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ--LLKEALPHLQI-NCSHFTTI  261 (284)
T ss_dssp             --GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHH--HHHHHSTTSEE-SCCCSCCT
T ss_pred             --hhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHH--HHHHhCccccc-cCccCCCC
Confidence              12234678999999999988864 33456788999999999982211111  13355666666 45555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.34  E-value=1.2e-12  Score=127.57  Aligned_cols=33  Identities=24%  Similarity=0.207  Sum_probs=17.8

Q ss_pred             CCCccceEeeccCCCCcccccccccCCCcCeEecc
Q 002129          869 LPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLG  903 (962)
Q Consensus       869 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~  903 (962)
                      .+++|++|++++| .++.++ .+.++++|++|+++
T Consensus       176 ~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         176 GLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEE
T ss_pred             CCCCCCEEECCCC-CCCCCh-hhcCCCCCCEEEcc
Confidence            4455555555553 455554 35555566666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=1.8e-12  Score=113.32  Aligned_cols=116  Identities=21%  Similarity=0.224  Sum_probs=90.0

Q ss_pred             eEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEe
Q 002129           62 RTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLL  141 (962)
Q Consensus        62 r~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~  141 (962)
                      |+|.+.++.       ...+ +.+.++++|++|++++|.|+.+|+.|+.+++|++|++++|.|+.+|. ++++++|++|+
T Consensus         1 R~L~Ls~n~-------l~~l-~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAHKD-------LTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELL   71 (124)
T ss_dssp             SEEECTTSC-------CSSC-CCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred             CEEEcCCCC-------CCCC-cccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-cccccccCeEE
Confidence            456655543       2333 45668999999999999999999999999999999999999999974 99999999999


Q ss_pred             cCCCcchhccc--hhhhccCCCcEEeccCCccccccccc----cccccccccc
Q 002129          142 LEDCDRLEKLC--ADMGNLVKLHHLKNSNTKSLEEMPVG----IGRLTCLQTL  188 (962)
Q Consensus       142 L~~~~~~~~lp--~~i~~L~~L~~L~l~~n~~~~~lp~~----~~~L~~L~~L  188 (962)
                      +++| .+..+|  ..++.+++|++|++++|. +...+..    +..+++|+.|
T Consensus        72 l~~N-~i~~~~~~~~l~~~~~L~~L~l~~N~-i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          72 LCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCC-ccCCCCCchhhcCCCCCCEEECCCCc-CCcCccHHHHHHHHCcCcceE
Confidence            9994 566665  468899999999999998 5544422    3334555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=5.4e-12  Score=121.74  Aligned_cols=142  Identities=18%  Similarity=0.213  Sum_probs=91.9

Q ss_pred             CceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCc
Q 002129           34 RYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRY  113 (962)
Q Consensus        34 ~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~  113 (962)
                      +.++++.+.++.+..   ++.+..+++|++|.+.++.       ...++ .+.++++|++|++++|.+..++ .++++++
T Consensus        40 ~~l~~L~l~~~~i~~---l~~l~~l~nL~~L~Ls~N~-------l~~~~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~  107 (199)
T d2omxa2          40 DQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQ-------LTDIT-PLKNLTKLVDILMNNNQIADIT-PLANLTN  107 (199)
T ss_dssp             TTCCEEECTTSCCCC---CTTGGGCTTCCEEECCSSC-------CCCCG-GGTTCTTCCEEECCSSCCCCCG-GGTTCTT
T ss_pred             cCCCEEECCCCCCCC---ccccccCCCcCcCcccccc-------ccCcc-cccCCccccccccccccccccc-ccccccc
Confidence            466777776666544   2345567777777776543       22333 2447777777777777777664 3677777


Q ss_pred             CcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccccceee
Q 002129          114 LRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFV  192 (962)
Q Consensus       114 L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~  192 (962)
                      |++|++++|.+..++ .+..+++|+.|++++| .+..+| .+..+++|+.|++.+|. +..++ .++++++|++|++..
T Consensus       108 L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~-~l~~~~~L~~L~l~~n~-l~~l~-~l~~l~~L~~L~ls~  181 (199)
T d2omxa2         108 LTGLTLFNNQITDID-PLKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLNFSSNQ-VTDLK-PLANLTTLERLDISS  181 (199)
T ss_dssp             CSEEECCSSCCCCCG-GGTTCTTCSEEECCSS-CCCCCG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCCEEECCS
T ss_pred             ccccccccccccccc-ccchhhhhHHhhhhhh-hhcccc-ccccccccccccccccc-ccCCc-cccCCCCCCEEECCC
Confidence            777777777766653 3667777777777774 344444 56777777777777776 55554 366777777775543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.6e-12  Score=117.59  Aligned_cols=107  Identities=25%  Similarity=0.348  Sum_probs=91.2

Q ss_pred             cccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchh-hhccCCC
Q 002129           83 PKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCAD-MGNLVKL  161 (962)
Q Consensus        83 ~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L  161 (962)
                      +.+.+...+|.|+|++|+|+.+|..+..+.+|++|+|++|.|++++ .+..+++|++|++++| .+..+|.. +..+++|
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL   89 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred             HhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccc-cccCCCcccccccccc
Confidence            3445788999999999999999887889999999999999999995 5899999999999995 57777765 5789999


Q ss_pred             cEEeccCCcccccccc--cccccccccccceee
Q 002129          162 HHLKNSNTKSLEEMPV--GIGRLTCLQTLCSFV  192 (962)
Q Consensus       162 ~~L~l~~n~~~~~lp~--~~~~L~~L~~L~~~~  192 (962)
                      ++|++++|. +..++.  .+..+++|++|++..
T Consensus        90 ~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~  121 (162)
T d1a9na_          90 TELILTNNS-LVELGDLDPLASLKSLTYLCILR  121 (162)
T ss_dssp             CEEECCSCC-CCCGGGGGGGGGCTTCCEEECCS
T ss_pred             ccceecccc-ccccccccccccccccchhhcCC
Confidence            999999998 777764  477888888886644

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.8e-13  Score=152.75  Aligned_cols=108  Identities=19%  Similarity=0.241  Sum_probs=75.7

Q ss_pred             CceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCc-----ccCccccCCCcCcEEEcCCCccccc-----
Q 002129           59 QHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRIL-----ELPDSVGDLRYLRYLNLSGTEIRTL-----  127 (962)
Q Consensus        59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~-----~lp~~~~~L~~L~~L~Ls~n~i~~l-----  127 (962)
                      .+|++|.+..+.      +.......++ .++++|+|+|++|+++     .++..+..+++|++|||++|.|+..     
T Consensus         2 ~~l~~ld~~~~~------i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l   75 (460)
T d1z7xw1           2 LDIQSLDIQCEE------LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV   75 (460)
T ss_dssp             EEEEEEEEESCC------CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred             CCCCEEEeeCCc------CChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHH
Confidence            357888776543      2333334555 8899999999999887     3456678889999999999988632     


Q ss_pred             Chhhh-ccCCccEEecCCCcch----hccchhhhccCCCcEEeccCCcccc
Q 002129          128 PESVS-KLYNLHSLLLEDCDRL----EKLCADMGNLVKLHHLKNSNTKSLE  173 (962)
Q Consensus       128 p~~i~-~L~~L~~L~L~~~~~~----~~lp~~i~~L~~L~~L~l~~n~~~~  173 (962)
                      .+.+. ...+|++|++++|...    ..++..+..+++|++|++++|. ++
T Consensus        76 ~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~-i~  125 (460)
T d1z7xw1          76 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LG  125 (460)
T ss_dssp             HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CH
T ss_pred             HHHHhcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc-ch
Confidence            22222 2347999999987532    2355667888999999999987 44

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=1.9e-11  Score=116.98  Aligned_cols=105  Identities=18%  Similarity=0.228  Sum_probs=85.1

Q ss_pred             CceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCccc-CccccCCCcCcEEEcCCCcccccCh-hhhccC
Q 002129           59 QHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTLPE-SVSKLY  135 (962)
Q Consensus        59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~  135 (962)
                      +++++|.+..+.      +....++..| ++++|+.|+|++|.+..+ +..|..+++|++|+|++|+|+.+|+ .|.+++
T Consensus        29 ~~l~~L~Ls~N~------i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~  102 (192)
T d1w8aa_          29 LHTTELLLNDNE------LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH  102 (192)
T ss_dssp             TTCSEEECCSCC------CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT
T ss_pred             CCCCEEEeCCCC------CcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCC
Confidence            578888887754      2234556666 899999999999998866 5678899999999999999998865 489999


Q ss_pred             CccEEecCCCcchhccc-hhhhccCCCcEEeccCCc
Q 002129          136 NLHSLLLEDCDRLEKLC-ADMGNLVKLHHLKNSNTK  170 (962)
Q Consensus       136 ~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~n~  170 (962)
                      +|++|+|++| .+..+| ..|..+++|++|++++|.
T Consensus       103 ~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         103 QLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             TCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             cccccccCCc-cccccCHHHhcCCcccccccccccc
Confidence            9999999995 566665 457899999999999987

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.13  E-value=1.2e-11  Score=118.37  Aligned_cols=111  Identities=15%  Similarity=0.180  Sum_probs=91.9

Q ss_pred             CccCccEEEecCCCCchhh-hhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCC-CCCccccc
Q 002129          688 LPPSLKLLLVWGCSKLESI-AEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLA  765 (962)
Q Consensus       688 l~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~  765 (962)
                      +|+++++|+|++|.+.+.+ +..|.++++|+.|++++|.+....+..+..+++|++|++++| .+..+|.. +..+++|+
T Consensus        27 lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L~  105 (192)
T d1w8aa_          27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCC
T ss_pred             CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-cccccCHHHHhCCCccc
Confidence            3478999999999987644 567899999999999999988888888999999999999999 66666654 55688999


Q ss_pred             ccccccccccccCccccCCCcccceeecCCCCCC
Q 002129          766 MLAIYNCKRLEALPKGLHNLKSLQELRIGKGVAL  799 (962)
Q Consensus       766 ~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l  799 (962)
                      +|++++|......+..|..+++|++|++++|+..
T Consensus       106 ~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccCCccccccCHHHhcCCcccccccccccccc
Confidence            9999999855545557889999999999988643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.01  E-value=6.2e-12  Score=120.46  Aligned_cols=107  Identities=20%  Similarity=0.238  Sum_probs=72.4

Q ss_pred             cccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhc
Q 002129           54 DLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSK  133 (962)
Q Consensus        54 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~  133 (962)
                      .+..+++|+.|.+..+.       ...+ +.+..+++|++|+|++|.|+.+|..+..+.+|++|++++|.|+.++ .+..
T Consensus        43 sl~~L~~L~~L~Ls~n~-------I~~i-~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~  113 (198)
T d1m9la_          43 TLSTLKACKHLALSTNN-------IEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK  113 (198)
T ss_dssp             HHHHTTTCCEEECSEEE-------ESCC-CCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHH
T ss_pred             HHhcccccceeECcccC-------CCCc-ccccCCccccChhhcccccccccccccccccccccccccccccccc-cccc
Confidence            45567777777776543       2333 3344777777777777777777665555667777777777777764 3777


Q ss_pred             cCCccEEecCCCcchhccc--hhhhccCCCcEEeccCCc
Q 002129          134 LYNLHSLLLEDCDRLEKLC--ADMGNLVKLHHLKNSNTK  170 (962)
Q Consensus       134 L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~n~  170 (962)
                      +++|++|++++| .+..++  ..++.+++|+.|++++|.
T Consensus       114 l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccccccc-hhccccccccccCCCccceeecCCCc
Confidence            777777777773 455554  346777777777777776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=7.3e-12  Score=139.40  Aligned_cols=109  Identities=14%  Similarity=0.042  Sum_probs=68.4

Q ss_pred             ceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcc-----cCccc
Q 002129           35 YLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILE-----LPDSV  108 (962)
Q Consensus        35 ~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~-----lp~~~  108 (962)
                      .++.|++.++++.......-+..++++|+|.+.++.-   .+...+...... .+++|++|||++|.|+.     +...+
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i---~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL---TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCC---CHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCC---CHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            4677888877776543233345677888888766431   000111122233 77888888888888762     23333


Q ss_pred             c-CCCcCcEEEcCCCcccc-----cChhhhccCCccEEecCCCc
Q 002129          109 G-DLRYLRYLNLSGTEIRT-----LPESVSKLYNLHSLLLEDCD  146 (962)
Q Consensus       109 ~-~L~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~  146 (962)
                      . ...+|++|+|++|++++     ++..+..+++|++|++++|.
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            2 23478888888888864     34557778888888888864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.89  E-value=3.5e-11  Score=115.12  Aligned_cols=109  Identities=22%  Similarity=0.247  Sum_probs=92.2

Q ss_pred             ccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccC
Q 002129           80 SMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLV  159 (962)
Q Consensus        80 ~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~  159 (962)
                      .++..+..+++|++|+|++|+|+.++ .+..+++|++|+|++|.|+.+|..+..+.+|++|++++| .+..++ .+..++
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N-~i~~l~-~~~~l~  115 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLV  115 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE-ECCCHH-HHHHHH
T ss_pred             hhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccc-cccccc-cccccc
Confidence            34455669999999999999999985 699999999999999999999877777889999999995 676664 689999


Q ss_pred             CCcEEeccCCcccccccc--cccccccccccceee
Q 002129          160 KLHHLKNSNTKSLEEMPV--GIGRLTCLQTLCSFV  192 (962)
Q Consensus       160 ~L~~L~l~~n~~~~~lp~--~~~~L~~L~~L~~~~  192 (962)
                      +|++|++++|. +..++.  .++.+++|+.|++..
T Consensus       116 ~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~  149 (198)
T d1m9la_         116 NLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             HSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECS
T ss_pred             cccccccccch-hccccccccccCCCccceeecCC
Confidence            99999999998 777663  578888898886644

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.8e-09  Score=98.35  Aligned_cols=92  Identities=21%  Similarity=0.179  Sum_probs=61.7

Q ss_pred             CcccccccccCCcccEEEecCC-CCcccC-ccccCCCcCcEEEcCCCcccccC-hhhhccCCccEEecCCCcchhccchh
Q 002129           78 APSMLPKLLKLQSLRVFSLRGY-RILELP-DSVGDLRYLRYLNLSGTEIRTLP-ESVSKLYNLHSLLLEDCDRLEKLCAD  154 (962)
Q Consensus        78 ~~~~~~~~~~l~~L~~L~L~~~-~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~  154 (962)
                      ..+.|..+..+++|+.|+++++ .++.++ .+|.++++|++|+|++|+|+.++ ..|..+++|++|+|++ +.+..+|.+
T Consensus        20 ~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~~   98 (156)
T d2ifga3          20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWK   98 (156)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCST
T ss_pred             CccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC-CCCcccChh
Confidence            3445555556777777777655 377664 45777777777777777777774 3477777777777777 456667666


Q ss_pred             hhccCCCcEEeccCCc
Q 002129          155 MGNLVKLHHLKNSNTK  170 (962)
Q Consensus       155 i~~L~~L~~L~l~~n~  170 (962)
                      +....+|++|++++|.
T Consensus        99 ~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          99 TVQGLSLQELVLSGNP  114 (156)
T ss_dssp             TTCSCCCCEEECCSSC
T ss_pred             hhccccccccccCCCc
Confidence            5445567777777776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3e-09  Score=96.77  Aligned_cols=104  Identities=15%  Similarity=0.034  Sum_probs=73.1

Q ss_pred             cccEEEecCCCCcccCccccCCCcCcEEEcCCC-cccccCh-hhhccCCccEEecCCCcchhcc-chhhhccCCCcEEec
Q 002129           90 SLRVFSLRGYRILELPDSVGDLRYLRYLNLSGT-EIRTLPE-SVSKLYNLHSLLLEDCDRLEKL-CADMGNLVKLHHLKN  166 (962)
Q Consensus        90 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n-~i~~lp~-~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l  166 (962)
                      ...+++++++++.++|..+..+++|++|++++| .++.++. .|.++++|+.|++++| .+..+ |..|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceec
Confidence            344577777777777777778888888888655 4777764 4777888888888874 45555 455778888888888


Q ss_pred             cCCcccccccccccccccccccceeeecC
Q 002129          167 SNTKSLEEMPVGIGRLTCLQTLCSFVVGK  195 (962)
Q Consensus       167 ~~n~~~~~lp~~~~~L~~L~~L~~~~~~~  195 (962)
                      ++|+ ++.+|.++....+|++|++..+..
T Consensus        88 s~N~-l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          88 SFNA-LESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             cCCC-CcccChhhhccccccccccCCCcc
Confidence            8887 777777644444677776655443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.43  E-value=4.8e-08  Score=102.82  Aligned_cols=64  Identities=22%  Similarity=0.190  Sum_probs=36.4

Q ss_pred             cCCCCCCccEEEecCCCCcc----ccC-CCCCCCCCcEEEEcCCCCCCCC----hhhh--h---cCCCCCccEEEecCC
Q 002129          544 SSLSLSSLREIEIYGCRSLV----SFP-EVALPSKLKKIEISSCDALKSL----PEAW--M---CDTNSSLEILEISGC  608 (962)
Q Consensus       544 ~~~~l~~L~~L~l~~~~~l~----~~~-~~~~~~~L~~L~l~~~~~l~~~----~~~~--~---~~~l~~L~~L~l~~c  608 (962)
                      .+.....|++|++++|..-.    .+. .+...++|+.+++++|.. ...    +...  +   ...+++|++|++++|
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCT-TSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcc-cccccccchHHHHHHHHHhhCCCccccccccc
Confidence            44557788999998864311    111 245567888888887752 221    1100  0   144566777777764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.43  E-value=3.7e-09  Score=111.56  Aligned_cols=107  Identities=15%  Similarity=0.124  Sum_probs=54.6

Q ss_pred             cCccEEEecCCCCchh-----hhhhccCCCCcceEeecCCccccc----cCccccCCCCccEEEcccCCCcccC-----C
Q 002129          690 PSLKLLLVWGCSKLES-----IAEMLDNNTSLEKINISGCGNLQT----LPSGLHNLCQLQEISIASCGNLVSS-----P  755 (962)
Q Consensus       690 ~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~l~~~-----~  755 (962)
                      +.|++|++++|.+...     +...+..+++|+.|++++|.+...    +...+..+++|++|++++|. ++.-     .
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~  264 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVV  264 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc-cCchhhHHHH
Confidence            4566666666665432     233455666677777776654322    23445566667777777663 2211     0


Q ss_pred             CC--CCCcccccccccccccccc----cCcccc-CCCcccceeecCCCC
Q 002129          756 EG--GLPCAKLAMLAIYNCKRLE----ALPKGL-HNLKSLQELRIGKGV  797 (962)
Q Consensus       756 ~~--~~~~~~L~~L~l~~c~~l~----~~~~~~-~~l~~L~~L~l~~~~  797 (962)
                      ..  ....+.|++|++++|....    .+...+ .++++|+.|++++|.
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            00  0112356666666665221    122222 245566666666663

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=6.1e-07  Score=81.81  Aligned_cols=64  Identities=27%  Similarity=0.335  Sum_probs=37.9

Q ss_pred             cccc-cCCcccEEEecCCCCcccC---ccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCc
Q 002129           83 PKLL-KLQSLRVFSLRGYRILELP---DSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCD  146 (962)
Q Consensus        83 ~~~~-~l~~L~~L~L~~~~i~~lp---~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~  146 (962)
                      +.++ .+++|++|+|++|+|+.++   ..+..+++|++|+|++|.|+++++ ...+..+|+.|++++|.
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence            4444 5667777777777766542   335566677777777777666654 12233456666666643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=8.3e-07  Score=80.91  Aligned_cols=103  Identities=22%  Similarity=0.085  Sum_probs=70.9

Q ss_pred             CcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccC---hhhhccCCccEEecCCCcchhccch-hhhccCCCcEE
Q 002129           89 QSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLP---ESVSKLYNLHSLLLEDCDRLEKLCA-DMGNLVKLHHL  164 (962)
Q Consensus        89 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp---~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L  164 (962)
                      ..+..+....+.+..++..+..+++|++|+|++|+|+.++   ..+..+++|++|++++ +.+..+++ ...+..+|+.|
T Consensus        42 ~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L  120 (162)
T d1koha1          42 NIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEEL  120 (162)
T ss_dssp             TCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSC
T ss_pred             cchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc-Cccccchhhhhhhcccccee
Confidence            3333344444434444445578899999999999999774   4478899999999999 56777764 33445679999


Q ss_pred             eccCCcccccccc-------cccccccccccceee
Q 002129          165 KNSNTKSLEEMPV-------GIGRLTCLQTLCSFV  192 (962)
Q Consensus       165 ~l~~n~~~~~lp~-------~~~~L~~L~~L~~~~  192 (962)
                      ++++|.+......       -+..+++|+.|+...
T Consensus       121 ~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LDg~~  155 (162)
T d1koha1         121 WLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHE  155 (162)
T ss_dssp             CCTTSTTSSSSSSHHHHHHHHHTTSTTCCEETTEE
T ss_pred             ecCCCCcCcCcccchhHHHHHHHHCCCCCEECcCC
Confidence            9999984332221       155678888886543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.54  E-value=0.00076  Score=60.91  Aligned_cols=84  Identities=17%  Similarity=0.167  Sum_probs=41.6

Q ss_pred             cCCcccEEEecCC-CCcc-----cCccccCCCcCcEEEcCCCcccc-----cChhhhccCCccEEecCCCcchhc----c
Q 002129           87 KLQSLRVFSLRGY-RILE-----LPDSVGDLRYLRYLNLSGTEIRT-----LPESVSKLYNLHSLLLEDCDRLEK----L  151 (962)
Q Consensus        87 ~l~~L~~L~L~~~-~i~~-----lp~~~~~L~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~~~~----l  151 (962)
                      +.+.|+.|+|+++ .++.     +-..+...++|++|+|++|.++.     +.+.+...+.|+.|++++|.....    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3455666666553 2431     22334555566666666665541     223344455666666666432211    2


Q ss_pred             chhhhccCCCcEEeccCCc
Q 002129          152 CADMGNLVKLHHLKNSNTK  170 (962)
Q Consensus       152 p~~i~~L~~L~~L~l~~n~  170 (962)
                      -..+..-+.|++|++++|.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhCCcCCEEECCCCc
Confidence            2234444556666666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.40  E-value=0.0015  Score=58.78  Aligned_cols=109  Identities=15%  Similarity=0.104  Sum_probs=73.6

Q ss_pred             CCCceeEEeeccccCCCCCCCCccccc----ccccCCcccEEEecCCCCcc-----cCccccCCCcCcEEEcCCCcccc-
Q 002129           57 DIQHLRTFLPVILSNSKPGYLAPSMLP----KLLKLQSLRVFSLRGYRILE-----LPDSVGDLRYLRYLNLSGTEIRT-  126 (962)
Q Consensus        57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~----~~~~l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~Ls~n~i~~-  126 (962)
                      +.++|+.|.+.+...     +..+...    .+...+.|++|+|++|.++.     +...+...+.|++|+|++|.|+. 
T Consensus        13 n~~~L~~L~L~~~~~-----i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~   87 (167)
T d1pgva_          13 DDTDLKEVNINNMKR-----VSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE   87 (167)
T ss_dssp             TCSSCCEEECTTCCS-----SCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             CCCCCcEEEeCCCCC-----CCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH
Confidence            457788887754221     2222222    22266789999999998872     23456677899999999998873 


Q ss_pred             ----cChhhhccCCccEEecCCCc--ch-----hccchhhhccCCCcEEeccCCc
Q 002129          127 ----LPESVSKLYNLHSLLLEDCD--RL-----EKLCADMGNLVKLHHLKNSNTK  170 (962)
Q Consensus       127 ----lp~~i~~L~~L~~L~L~~~~--~~-----~~lp~~i~~L~~L~~L~l~~n~  170 (962)
                          +-..+..-+.|++|++++|.  .+     ..+...+..-+.|+.|+++.+.
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence                33456777889999998752  11     2244556677899999987764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.81  E-value=0.0016  Score=58.67  Aligned_cols=81  Identities=19%  Similarity=0.178  Sum_probs=45.1

Q ss_pred             cCCcccEEEecC-CCCcc-----cCccccCCCcCcEEEcCCCcccc-----cChhhhccCCccEEecCCCcchh----cc
Q 002129           87 KLQSLRVFSLRG-YRILE-----LPDSVGDLRYLRYLNLSGTEIRT-----LPESVSKLYNLHSLLLEDCDRLE----KL  151 (962)
Q Consensus        87 ~l~~L~~L~L~~-~~i~~-----lp~~~~~L~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~~~----~l  151 (962)
                      +.+.|+.|+|++ +.++.     +-..+...++|+.|+|++|.++.     +-+.+...+.++.+++++|....    .+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            556677777765 33541     23345566677777777776642     22345556677777777653321    22


Q ss_pred             chhhhccCCCcEEecc
Q 002129          152 CADMGNLVKLHHLKNS  167 (962)
Q Consensus       152 p~~i~~L~~L~~L~l~  167 (962)
                      -..+...++|+.++++
T Consensus        95 ~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          95 VEALQSNTSLIELRID  110 (166)
T ss_dssp             HHGGGGCSSCCEEECC
T ss_pred             HHHHHhCccccEEeec
Confidence            2445566667665553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.25  E-value=0.0078  Score=53.93  Aligned_cols=109  Identities=17%  Similarity=0.154  Sum_probs=75.1

Q ss_pred             CCCceeEEeeccccCCCCCCCCccccccc----ccCCcccEEEecCCCCcc-----cCccccCCCcCcEEEcCCCccc--
Q 002129           57 DIQHLRTFLPVILSNSKPGYLAPSMLPKL----LKLQSLRVFSLRGYRILE-----LPDSVGDLRYLRYLNLSGTEIR--  125 (962)
Q Consensus        57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~----~~l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~Ls~n~i~--  125 (962)
                      +.+.|+.|.+.+...     +.......+    ...++|+.|++++|.++.     +-..+...+.++++++++|.++  
T Consensus        15 ~~~~L~~L~L~~~~~-----i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          15 NDPDLEEVNLNNIMN-----IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             TCTTCCEEECTTCTT-----CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             cCCCCcEEEcCCCCC-----CCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            557788887754221     222222222    267899999999999862     3345677899999999999876  


Q ss_pred             ---ccChhhhccCCccEEecCCC-cchh-----ccchhhhccCCCcEEeccCCc
Q 002129          126 ---TLPESVSKLYNLHSLLLEDC-DRLE-----KLCADMGNLVKLHHLKNSNTK  170 (962)
Q Consensus       126 ---~lp~~i~~L~~L~~L~L~~~-~~~~-----~lp~~i~~L~~L~~L~l~~n~  170 (962)
                         .+-+.+...+.|+.++|+.+ +.++     .+.+.+...++|+.|+++.+.
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence               23456778889998777643 2232     345567788999999998775