Citrus Sinensis ID: 002141

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960
MKLEERQIENLLLHSFDCFSSAFMSLAANFPLNSKQKPCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQGSMTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSPNSLDSSFAPFADGTISSSNSNSDAGDSSNVPTLNSFNGSNSFVELLQMVGSTMLHGNYNHRNGHMSSDENSKDEHSQFQTLESNTQRVKVKDIDDPKVLSRVSSIPPSSFHPCLTQDLSVEVESYEMRREETRSSGISDVTDKIALMPEFASQTTDATKLIVAGPEAPRHGNKQSRNSMQANKNSIAQHESELFGDSRFAMEPPAHAQKNDLNLPKISSGSIDAIESHNALYNRENTQLKSSVSDQNKYDHSFSKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKLNKVPGKADADHK
cHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHcccccHHHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHcccccccccccccccccccccccEEEEcccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccccccccccccEEEEEEEccccccccccccccHHHcccccEEEEEcccccHHcccccHHHHHHHHHccEEEEEccccccccccccccccccccccccccccccccccc
cccHHHHHHHHEEHHHHHHHHHHHHHHHcccccccccccccccccEEEccccEEEEccccccEEcccccccccccccccEEccccccccEEEEcccccccccccEcccccccccccccccccccHHHHHHccccccccccccccccccEEcccccccccccccccccccccccccEEEEcccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccHHHccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHccccccHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHccccccHcHHHHHHHHHcccccccccccHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHHcHHHccccHHHHHHHHHHHHHHcHHHcccccccccccccHHHHHHHHHHHHHHHcccccccHcccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccHHHHHHHHcccccccccEEEcHHHHHHHHHHHHHHccccccccHHHHHEEEcccHccccccccccccHcccccEEEEcccccHHHcccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccHHHHcccEEEEEEEEEccHccccccccccEEEEEEEEEEccccccccccccHHHHHccccEEEEEcccHHHHHccccHHHHHHHHHccEEEEEcccccccccccHHHHcccccccccccccccHHHcc
MKLEERQIENLLLHSFDCFSSAFMSlaanfplnskqkpchgeeitsvieepaeyvldpedtiewkekmshqpvcdqgsmtlhgsesseerevvssnnslesSTSVVSSINESkcklmnsseiypetyndvlsspnsldssfapfadgtisssnsnsdagdssnvptlnsfngsNSFVELLQMVGstmlhgnynhrnghmssdenskdehsqfqtlesntqrvkvkdiddpkvlsrvssippssfhpcltqdlsveVESYEMRREetrssgisdvtdkialmpefasqttdATKLivagpeaprhgnkqsrnSMQANKNSIAQHEselfgdsrfameppahaqkndlnlpkissgsidAIESHNAlynrentqlkssvsdqnkydhsfskelngiddatskskstrvskekqndfdwdSLRRQVEanggkkerpehtkdsldWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDhgsvdlewlrdvppdkaKEYLLSFRGLGLKSVECVRLLTlhhlafpvdtnvgriavrlgwvplqplpeslqlHLLELYPVLESIQKYLWprlckldqRTLYELHYQMITFGKVfctkskpncnacpmrgecrHFASAFassrlalpgpeekAIVSAnenrtntqnpamminqlplplthatdlpvgkleiavnncepiieepatpepervqvsendiedtfcedpeeiptIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAgaasipapklknvsrlrtehqvyelpdshpllrgmekrepddpgryLLAIwtpgetansiqppesrcssqehgkmcdektcfscnsvresefqivrgtilipcrtamrgsfplngtyfqvnevfadhdsslkpinvprewlwnlprrtvyfgtsipsifkglttegiqhcfwrgyvcvrgfdqksraprplmarlhfpasklnkvpgkadadhk
MKLEERQIENLLLHSFDCFSSAFMSLAANFPLNSKQKPCHGEEITsvieepaeyvlDPEDTIEWKEKMSHQPVCDQGSMTLHGSESSEEREVvssnnslesstsvVSSINESKCKLMNSSEIYPETYNDVLSSPNSLDSSFAPFADGTISSSNSNSDAGDSSNVPTLNSFNGSNSFVELLQMVGSTMLHGNYNHRNGHMSSDENSKDEHSQFQtlesntqrvkvkdiddPKVLSrvssippssfhpcltqdlSVEVESYEMRreetrssgisdvtdKIALMPEFASQTTDATKLIVAGPEAPRHGNKQSRNSMQANKNSIAQHESELFGDSRFAMEPPAHaqkndlnlpkISSGSIDAIESHNALYNRENTQLKSSVSDQNKYDHsfskelngiddatskskstrvskekqndfdwdslrrqveanggkkerpehtkdsldweavrCADVNKIAntikergmnnmLAGRIKDFLNRLVRDHGsvdlewlrdvppDKAKEYLLSFRGLGLKSVECVRLLTLHHlafpvdtnVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPiieepatpepervqvSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGaasipapklknvsrlrTEHQvyelpdshpllrgmEKREPDDPGRYLLAIWTPgetansiqppESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMArlhfpasklnkvpgkadadhk
MKLEERQIENLLLHSFDCFSSAFMSLAANFPLNSKQKPCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQGSMTLHGsesseerevvssnnslesstsvvssinesKCKLMNSSEIYPETYNDVLSSPNSLDSSFAPFADGTIsssnsnsdagdssnVPTLNSFNGSNSFVELLQMVGSTMLHGNYNHRNGHMSSDENSKDEHSQFQTLESNTQRVKVKDIDDPKVLSRVSSIPPSSFHPCLTQDLSVEVESYEMRREETRSSGISDVTDKIALMPEFASQTTDATKLIVAGPEAPRHGNKQSRNSMQANKNSIAQHESELFGDSRFAMEPPAHAQKNDLNLPKISSGSIDAIESHNALYNRENTQLKSSVSDQNKYDHSFSKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVplqplpeslqlhllelypVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHfasafassRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCepiieepatpepeRVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKLNKVPGKADADHK
*******IENLLLHSFDCFSSAFMSLAANFPLN*****CH*EEITSVIEEPAEYVLD**********************************************************************************************************************FVELLQMVGSTML***********************************************************************************************************************************************************************************************************************************************************LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA******************************INQLPLPLTHATDLPVGKLEIAVNNCEPII******************************TIKLNMKEFTQTLQNYM*************ALVALTAG*******************************************RYLLAIWT*************************EKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFD********************************
******Q*ENLLLHSFDCFSSAFMSLAA*************************YVLDPEDTIEWK*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************DWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH***************************************************************PIIEEPAT********SENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQEN**********ALVALTAGAASI*APKLK*VSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGE************************TCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLH******************
MKLEERQIENLLLHSFDCFSSAFMSLAANFPLNSKQKPCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQ*********************************NESKCKLMNSSEIYPETYNDVLSSPNSLDSSFAPFADGTIS*************VPTLNSFNGSNSFVELLQMVGSTMLHGNYNHRNGH*******************NTQRVKVKDIDDPKVLSRVSSIPPSSFHPCLTQDLSVEVE*************ISDVTDKIALMPEFASQTTDATKLIVAGPEAPRHGNKQSRNSMQANKNSIAQHESELFGDSRFAMEPPAHAQKNDLNLPKISSGSIDAIESHNALYNRENT***********YDHSFSKELNGIDDA****************FDWDSLRRQV***************SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETA******************CDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKLN***********
*KLEERQIENLLLHSFDCFSSAFMSLAANFPLNSKQKPCH*EEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQGSMTLHGSESSEEREVVSS*******************************************************************NVPTLNSFNGSNSFVELLQMVGSTMLHGNYNHRNGHMS*******EHSQFQTLESNTQRVKVKDIDDPKVLSRVSSIPPSSFHPCLT*********************************************I*********************************************************************************************************************DFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALP*************************QLPLP****************NNCEPIIEEPATPEPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGE********************C**KTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPA***************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKLEERQIENLLLHSFDCFSSAFMSLAANFPLNSKQKPCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQGSMTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSPNSLDSSFAPFADGTISSSNSNSDAGDSSNVPTLNSFNGSNSFVELLQMVGSTMLHGNYNHRNGHMSSDENSKDEHSQFQTLESNTQRVKVKDIDDPKVLSRVSSIPPSSFHPCLTQDLSVEVESYEMRREETRSSGISDVTDKIALMPEFASQTTDATKLIVAGPEAPRHGNKQSRNSMQANKNSIAQHESELFGDSRFAMEPPAHAQKNDLNLPKISSGSIDAIESHNALYNRENTQLKSSVSDQNKYDHSFSKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFCEDPEEIPTIKLNxxxxxxxxxxxxxxxxxxxxxDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKLNKVPGKADADHK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query960 2.2.26 [Sep-21-2011]
Q8LK561987 Transcriptional activator yes no 0.947 0.457 0.495 0.0
Q9SJQ61393 Protein ROS1 OS=Arabidops no no 0.564 0.389 0.716 0.0
Q9SR661332 DEMETER-like protein 2 OS no no 0.541 0.390 0.614 0.0
O494981044 DEMETER-like protein 3 OS no no 0.544 0.500 0.478 1e-145
Q9WYK0213 Endonuclease III OS=Therm no no 0.138 0.624 0.293 1e-05
Q4UK93213 Endonuclease III OS=Ricke yes no 0.142 0.643 0.262 0.0001
Q8SRB8238 Endonuclease III homolog yes no 0.146 0.592 0.266 0.0003
O05956212 Endonuclease III OS=Ricke yes no 0.112 0.509 0.267 0.0005
P39788219 Probable endonuclease III yes no 0.155 0.680 0.266 0.0006
>sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2 Back     alignment and function desciption
 Score =  857 bits (2214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/959 (49%), Positives = 614/959 (64%), Gaps = 49/959 (5%)

Query: 20   SSAFMSLAANFPLNSKQKPCHGEEITSVI-EEPAEYVLDPEDTIEWKEKMSHQPVCDQGS 78
            SSAFMSLAA FP            + SV+ E+P   +L+  +   W+EK+ H        
Sbjct: 1043 SSAFMSLAARFPPKLSSSREDERNVRSVVVEDPEGCILNLNEIPSWQEKVQHP-----SD 1097

Query: 79   MTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSPNSLD 138
            M + G +S  + ++   +NS       +   N  +  + N  E       +VLSS +S D
Sbjct: 1098 MEVSGVDSGSKEQLRDCSNS------GIERFNFLEKSIQNLEE-------EVLSSQDSFD 1144

Query: 139  SSFAPFADGTISSSNSNSDAGDSSNVPTLNSFNGSNSFVELL--QMVGSTMLHGNYNHRN 196
             +         S S S SDA   +      + +G++  V+     +     L GN     
Sbjct: 1145 PAIFQSCGRVGSCSCSKSDAEFPTTRCETKTVSGTSQSVQTGSPNLSDEICLQGNERPHL 1204

Query: 197  GHMSSDENSKDEHSQFQTLESNTQRVKVKD---IDDPKVLSRVSSIPPSSFHPCLTQDLS 253
               S D   ++  +  Q      + +  KD      P+  +   + P SS+  C T+   
Sbjct: 1205 YEGSGDVQKQETTNVAQKKPDLEKTMNWKDSVCFGQPRNDTNWQTTPSSSYEQCATRQPH 1264

Query: 254  V-EVESYEMRREETRSS--GISDVTDKIAL--MPEFASQTTDATKLIVAGPEAPRHGNKQ 308
            V ++E + M+ E    S   IS   D++    +P    +   +      G   P   ++ 
Sbjct: 1265 VLDIEDFGMQGEGLGYSWMSISPRVDRVKNKNVPRRFFRQGGSVPREFTGQIIPSTPHEL 1324

Query: 309  SRNSMQANKNSIAQHESELFGDSRFAMEPPAHAQKNDLNLPKISSGSIDAIESH-----N 363
                +  + +++ +H+ +   + +  M   +H QK  L+L   S   +    S      +
Sbjct: 1325 PGMGLSGSSSAVQEHQDDTQHNQQDEMNKASHLQKTFLDLLNSSEECLTRQSSTKQNITD 1384

Query: 364  ALYNRENTQ------LKSSVSDQNKY--DHSFSKELNGIDDATSKSKSTR-----VSKEK 410
                R+ T       L ++ S QN     +S +KE   ++   + +   R     ++  K
Sbjct: 1385 GCLPRDRTAEDVVDPLSNNSSLQNILVESNSSNKEQTAVEYKETNATILREMKGTLADGK 1444

Query: 411  QNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRI 470
            +    WDSLR+ VE N G++ER ++  DS+D+EA+R A +++I+  IKERGMNNMLA RI
Sbjct: 1445 KPTSQWDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRI 1504

Query: 471  KDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTN 530
            KDFL R+V+DHG +DLEWLR+ PPDKAK+YLLS RGLGLKSVECVRLLTLH+LAFPVDTN
Sbjct: 1505 KDFLERIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTN 1564

Query: 531  VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITF 590
            VGRIAVR+GWVPLQPLPESLQLHLLELYPVLESIQK+LWPRLCKLDQRTLYELHYQ+ITF
Sbjct: 1565 VGRIAVRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITF 1624

Query: 591  GKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMI 650
            GKVFCTKS+PNCNACPMRGECRHFASA+AS+RLALP PEE+++ SA         P + I
Sbjct: 1625 GKVFCTKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVAI 1684

Query: 651  NQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFC-EDPEEIP 709
              + LPL     L  G       NCEPIIEEPA+P  E  +++E+DIED +  EDP+EIP
Sbjct: 1685 PMIELPLPLEKSLASGAPS-NRENCEPIIEEPASPGQECTEITESDIEDAYYNEDPDEIP 1743

Query: 710  TIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVY 769
            TIKLN+++F  TL+ +M+ N+ELQEGDMSKALVAL     SIP PKLKN+SRLRTEHQVY
Sbjct: 1744 TIKLNIEQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVY 1803

Query: 770  ELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFS 829
            ELPDSH LL GM+KREPDDP  YLLAIWTPGETANS QPPE +C  +  GKMC ++TC  
Sbjct: 1804 ELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSE 1863

Query: 830  CNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWN 889
            CNS+RE+  Q VRGT+LIPCRTAMRGSFPLNGTYFQVNE+FADH+SSLKPI+VPR+W+W+
Sbjct: 1864 CNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWD 1923

Query: 890  LPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKL 948
            LPRRTVYFGTS+ SIF+GL+TE IQ CFW+G+VCVRGF+QK+RAPRPLMARLHFPASKL
Sbjct: 1924 LPRRTVYFGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASKL 1982
Transcriptional activator involved in gene imprinting. Catalyzes the release of 5-methylcytosine (5-meC) from DNA by a glycosylase/lyase mechanism. Allows the expression of the maternal copy of the imprinted MEA gene before fertilization, possibly by antagonizing or suppressing DNA methylation on target promoter. Probably acts by nicking the MEA promoter. Required for stable reproducible patterns of floral and vegetative development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: -
>sp|Q9SJQ6|ROS1_ARATH Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2 Back     alignment and function description
>sp|Q9SR66|DML2_ARATH DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=3 SV=2 Back     alignment and function description
>sp|O49498|DML3_ARATH DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2 Back     alignment and function description
>sp|Q9WYK0|END3_THEMA Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=nth PE=3 SV=1 Back     alignment and function description
>sp|Q4UK93|END3_RICFE Endonuclease III OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=nth PE=3 SV=1 Back     alignment and function description
>sp|Q8SRB8|NTH1_ENCCU Endonuclease III homolog OS=Encephalitozoon cuniculi (strain GB-M1) GN=NTH1 PE=1 SV=1 Back     alignment and function description
>sp|O05956|END3_RICPR Endonuclease III OS=Rickettsia prowazekii (strain Madrid E) GN=nth PE=3 SV=1 Back     alignment and function description
>sp|P39788|END3_BACSU Probable endonuclease III OS=Bacillus subtilis (strain 168) GN=nth PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query960
330370553 1758 repressor of gene silencing 1 [Gossypium 0.970 0.530 0.621 0.0
225440992 1942 PREDICTED: transcriptional activator DEM 0.965 0.477 0.601 0.0
138996985 1796 repressor of silencing 1 [Nicotiana taba 0.951 0.508 0.551 0.0
225449724 2198 PREDICTED: transcriptional activator DEM 0.943 0.412 0.556 0.0
356546049 1881 PREDICTED: protein ROS1-like [Glycine ma 0.921 0.470 0.541 0.0
297740062 1470 unnamed protein product [Vitis vinifera] 0.593 0.387 0.784 0.0
356503779 1764 PREDICTED: protein ROS1-like [Glycine ma 0.904 0.492 0.535 0.0
356537037 1903 PREDICTED: uncharacterized protein LOC10 0.884 0.446 0.549 0.0
296090400 1621 unnamed protein product [Vitis vinifera] 0.567 0.336 0.786 0.0
449440467 1849 PREDICTED: uncharacterized protein LOC10 0.592 0.307 0.748 0.0
>gi|330370553|gb|AEC12446.1| repressor of gene silencing 1 [Gossypium hirsutum] Back     alignment and taxonomy information
 Score = 1183 bits (3061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/996 (62%), Positives = 719/996 (72%), Gaps = 64/996 (6%)

Query: 20   SSAFMSLAANFPLNSKQK-PCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQGS 78
            SSAFMSLAA FP+ SK K   + +E TS++     YVL+PE++I+W  K + QPV DQ S
Sbjct: 768  SSAFMSLAARFPIKSKSKDKLYHQEGTSLVNGEEFYVLEPEESIKWDAKTAIQPVGDQSS 827

Query: 79   MTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETY----------- 127
            MT+ G + SEE+EV +S     SST+ VSSINE KC L+NSS     TY           
Sbjct: 828  MTVDGYQDSEEKEVANSEELSGSSTATVSSINEPKCNLLNSSGSGLSTYCDSTANRLNME 887

Query: 128  ---------------NDVLSSPNSL-------DSSFAPFADGTISSSNSNSDAGDSSNVP 165
                           NDVLSS NS+       D S    A+ T S S  NS+  D +  P
Sbjct: 888  TIRGKTDCFKGDEETNDVLSSQNSVVSSENSGDFSLVQTAERTGSCSEGNSEGADHTKRP 947

Query: 166  TLNSFNGSNSFVELLQMVGSTMLHGNYNHRNGHMSSDENSKDEHSQFQTLESNTQRVKVK 225
              N  NGS SFV+LLQMVGS  LH   +H+N  MS +E  K ++        N QR    
Sbjct: 948  IFNILNGSTSFVQLLQMVGSARLHEVQSHQN--MSPNEKLKCQNKPI----PNHQRENCD 1001

Query: 226  DIDDPKVLSRVSSIPPSSFHPCLTQDLSV-EVESYEMRREETRSSGISDVTDKIA----- 279
            + D PK  +R   +P +++HP LT +  V E+  +E  +EETR S  S   D+       
Sbjct: 1002 NSDGPKSFTREDLMPSANYHPYLTLNSEVREIGHFETLKEETRVSEASKTIDESMIKRLS 1061

Query: 280  -LMPEFASQTTDATKLI--VAGPEAPRHGNKQSRNSMQANKNSIAQHESELFGDSRFAME 336
             L  E AS+T D       V   +     N QS       + +++     L  D+   +E
Sbjct: 1062 PLTQESASRTMDQNDKTRSVQVAQQSSFENFQSSTYTIPVEMTVSHCPKGLLQDTINLVE 1121

Query: 337  PPAHAQKNDL----NLPKISSGSIDAIESHNALYNRENTQLKSSVSDQNKYDHSFSKELN 392
             PA AQ  ++    ++ K S  ++D  ES  A  N+ N Q K   S+   +D S +KELN
Sbjct: 1122 SPAEAQNKEMLRHVSMSKHSEETLDITESSTAFDNQRNPQQKMQESNLYTHDSSSNKELN 1181

Query: 393  GIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNK 452
             +     KS+  +V KEK++DFDWDSLR+Q E NG K+E+ E T DSLDWEAVRCA+V++
Sbjct: 1182 SMV-GELKSEGRKVKKEKKDDFDWDSLRKQTEVNGRKREKTERTMDSLDWEAVRCAEVHE 1240

Query: 453  IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
            IA TIKERGMNN+LA RIKDFLNRLVRDHGS+DLEWLRDVPPDKAKEYLLS RGLGLKSV
Sbjct: 1241 IAETIKERGMNNVLAQRIKDFLNRLVRDHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSV 1300

Query: 513  ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
            ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP+LESIQKYLWPRL
Sbjct: 1301 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPILESIQKYLWPRL 1360

Query: 573  CKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKA 632
            CKLDQRTLYELHYQMITFGKVFCTK KPNCNACPMRGECRHFASAFAS+RLALPGPEEK+
Sbjct: 1361 CKLDQRTLYELHYQMITFGKVFCTKGKPNCNACPMRGECRHFASAFASARLALPGPEEKS 1420

Query: 633  IVSANENRTNTQNPAMMINQLPLPLTHATDL--------PVGKLEIA--VNNCEPIIEEP 682
            IVSA EN T+ +NPA++I+QL LPL  + +L            L+ A  VN C+PIIEEP
Sbjct: 1421 IVSATENGTSDRNPAVIIDQLALPLPQSNELLDRNYQSEANQHLQAASTVNKCDPIIEEP 1480

Query: 683  ATPEPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALV 742
            A+PEPE  QV+ENDIED F EDP+EIPTIKLNM+EFTQTLQNYMQ N+ELQEGDMSKALV
Sbjct: 1481 ASPEPECTQVAENDIEDMFSEDPDEIPTIKLNMEEFTQTLQNYMQNNIELQEGDMSKALV 1540

Query: 743  ALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGET 802
            ALTA AASIP P+LKNV+RLRTEHQVYELPDSHPLL  ++KREPDDP +YLLAIWTPGET
Sbjct: 1541 ALTAEAASIPTPRLKNVNRLRTEHQVYELPDSHPLLNELDKREPDDPCKYLLAIWTPGET 1600

Query: 803  ANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGT 862
            ANSIQ PE RC+SQEHGK+CD++TCFSCNS++E+E QIVRGT+LIPCRTAMRGSFPLNGT
Sbjct: 1601 ANSIQQPERRCNSQEHGKLCDDETCFSCNSIQEAESQIVRGTLLIPCRTAMRGSFPLNGT 1660

Query: 863  YFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYV 922
            YFQVNEVFADHDSSL PI VPREWLWNLPRR VYFGTSIPSIFKGLTTEGIQHCFWRGYV
Sbjct: 1661 YFQVNEVFADHDSSLNPIAVPREWLWNLPRRMVYFGTSIPSIFKGLTTEGIQHCFWRGYV 1720

Query: 923  CVRGFDQKSRAPRPLMARLHFPASKLNKVPGKADAD 958
            CVRGFDQKSRAPRPLMARLHFP S+L K  GK   +
Sbjct: 1721 CVRGFDQKSRAPRPLMARLHFPVSRLAKAKGKGAGE 1756

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225440992|ref|XP_002277401.1| PREDICTED: transcriptional activator DEMETER-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|138996985|dbj|BAF52855.1| repressor of silencing 1 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|225449724|ref|XP_002267310.1| PREDICTED: transcriptional activator DEMETER-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356546049|ref|XP_003541444.1| PREDICTED: protein ROS1-like [Glycine max] Back     alignment and taxonomy information
>gi|297740062|emb|CBI30244.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356503779|ref|XP_003520681.1| PREDICTED: protein ROS1-like [Glycine max] Back     alignment and taxonomy information
>gi|356537037|ref|XP_003537037.1| PREDICTED: uncharacterized protein LOC100806794 [Glycine max] Back     alignment and taxonomy information
>gi|296090400|emb|CBI40219.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449440467|ref|XP_004138006.1| PREDICTED: uncharacterized protein LOC101222935 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query960
TAIR|locus:21844321987 DME "DEMETER" [Arabidopsis tha 0.663 0.320 0.579 1.9e-203
TAIR|locus:20449231393 DML1 "demeter-like 1" [Arabido 0.760 0.524 0.535 3.2e-199
TAIR|locus:21001381332 DML2 "demeter-like 2" [Arabido 0.579 0.417 0.535 6e-159
TAIR|locus:21243011044 DML3 "demeter-like protein 3" 0.570 0.524 0.452 1.7e-122
TAIR|locus:451510334278 AT4G04957 "AT4G04957" [Arabido 0.047 0.589 0.695 1.4e-11
TAIR|locus:2100382293 AT3G47830 [Arabidopsis thalian 0.104 0.341 0.42 1.4e-11
TIGR_CMR|CHY_1121210 CHY_1121 "endonuclease III" [C 0.032 0.147 0.419 7.1e-05
ASPGD|ASPL0000003678502 AN10840 [Emericella nidulans ( 0.064 0.123 0.338 0.00089
TAIR|locus:2184432 DME "DEMETER" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1906 (676.0 bits), Expect = 1.9e-203, Sum P(2) = 1.9e-203
 Identities = 378/652 (57%), Positives = 461/652 (70%)

Query:   304 HGNKQSRNSM-QANKNSIAQHES-ELFGDSRFAMEPPAHAQKN--DLNLPKISSGS--ID 357
             H +    N   + NK S  Q    +L   S   +   +  ++N  D  LP+  +    +D
Sbjct:  1339 HQDDTQHNQQDEMNKASHLQKTFLDLLNSSEECLTRQSSTKQNITDGCLPRDRTAEDVVD 1398

Query:   358 AIESHNALYNRENTQLKSSVSDQNKYDHSFSKELNGIDDATSKSKSTRVSKEKQNDFDWD 417
              + ++++L N    +  SS  +Q   ++   KE N       + K T    +K     WD
Sbjct:  1399 PLSNNSSLQNIL-VESNSSNKEQTAVEY---KETNAT--ILREMKGTLADGKKPTS-QWD 1451

Query:   418 SLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRL 477
             SLR+ VE N G++ER ++  DS+D+EA+R A +++I+  IKERGMNNMLA RIKDFL R+
Sbjct:  1452 SLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRIKDFLERI 1511

Query:   478 VRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVR 537
             V+DHG +DLEWLR+ PPDKAK+YLLS RGLGLKSVECVRLLTLH+LAFPVDTNVGRIAVR
Sbjct:  1512 VKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIAVR 1571

Query:   538 LGWVXXXXXXXXXXXXXXXXXXVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTK 597
             +GWV                  VLESIQK+LWPRLCKLDQRTLYELHYQ+ITFGKVFCTK
Sbjct:  1572 MGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITFGKVFCTK 1631

Query:   598 SKPNCNACPMRGECRHXXXXXXXXRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPL 657
             S+PNCNACPMRGECRH        RLALP PEE+++ SA         P + I  + LPL
Sbjct:  1632 SRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVAIPMIELPL 1691

Query:   658 THATDLPVGKLEIAVNNCXXXXXXXXXXXXXRVQVSENDIEDTFC-EDPEEIPTIKLNMK 716
                  L  G       NC               +++E+DIED +  EDP+EIPTIKLN++
Sbjct:  1692 PLEKSLASGAPSNR-ENCEPIIEEPASPGQECTEITESDIEDAYYNEDPDEIPTIKLNIE 1750

Query:   717 EFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHP 776
             +F  TL+ +M+ N+ELQEGDMSKALVAL     SIP PKLKN+SRLRTEHQVYELPDSH 
Sbjct:  1751 QFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPDSHR 1810

Query:   777 LLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRES 836
             LL GM+KREPDDP  YLLAIWTPGETANS QPPE +C  +  GKMC ++TC  CNS+RE+
Sbjct:  1811 LLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSLREA 1870

Query:   837 EFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVY 896
               Q VRGT+LIPCRTAMRGSFPLNGTYFQVNE+FADH+SSLKPI+VPR+W+W+LPRRTVY
Sbjct:  1871 NSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTVY 1930

Query:   897 FGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKL 948
             FGTS+ SIF+GL+TE IQ CFW+G+VCVRGF+QK+RAPRPLMARLHFPASKL
Sbjct:  1931 FGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASKL 1982
GO:0003824 "catalytic activity" evidence=IEA
GO:0004519 "endonuclease activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;ISS
GO:0006281 "DNA repair" evidence=IEA
GO:0006284 "base-excision repair" evidence=IEA
GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0019104 "DNA N-glycosylase activity" evidence=ISS;IDA
GO:0043078 "polar nucleus" evidence=IDA
GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IMP
GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IDA
GO:0006306 "DNA methylation" evidence=RCA;IDA
TAIR|locus:2044923 DML1 "demeter-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100138 DML2 "demeter-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124301 DML3 "demeter-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4515103342 AT4G04957 "AT4G04957" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100382 AT3G47830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1121 CHY_1121 "endonuclease III" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
ASPGD|ASPL0000003678 AN10840 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00021675001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (858 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query960
COG0177211 COG0177, Nth, Predicted EndoIII-related endonuclea 3e-21
pfam00730144 pfam00730, HhH-GPD, HhH-GPD superfamily base excis 8e-17
smart00478149 smart00478, ENDO3c, endonuclease III 5e-16
cd00056158 cd00056, ENDO3c, endonuclease III; includes endonu 6e-15
COG2231215 COG2231, COG2231, Uncharacterized protein related 3e-10
TIGR01083191 TIGR01083, nth, endonuclease III 2e-07
COG0122285 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-o 6e-05
TIGR00588310 TIGR00588, ogg, 8-oxoguanine DNA-glycosylase (ogg) 3e-04
smart0052521 smart00525, FES, iron-sulpphur binding domain in D 0.003
>gnl|CDD|223255 COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score = 92.6 bits (231), Expect = 3e-21
 Identities = 51/172 (29%), Positives = 73/172 (42%), Gaps = 27/172 (15%)

Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
             E +  AD  ++   IK  G+    A  IK+    L+   G        +VP    +E 
Sbjct: 60  TPEDLLNADEEELEELIKSIGLYRNKAKNIKELARILLEKFGG-------EVP--DTREE 110

Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
           LLS  G+G K+   V        A  VDT+V R++ RLG VP    PE ++  L++L P 
Sbjct: 111 LLSLPGVGRKTANVVLSFAFGIPAIAVDTHVHRVSNRLGLVP-GKTPEEVEEALMKLIP- 168

Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
                K LW            +LH+ +I  G+  C   KP C  CP+   C 
Sbjct: 169 -----KELW-----------TDLHHWLILHGRYICKARKPRCEECPLADLCP 204

Length = 211
>gnl|CDD|216088 pfam00730, HhH-GPD, HhH-GPD superfamily base excision DNA repair protein Back     alignment and domain information
>gnl|CDD|214684 smart00478, ENDO3c, endonuclease III Back     alignment and domain information
>gnl|CDD|238013 cd00056, ENDO3c, endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>gnl|CDD|225140 COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|130155 TIGR01083, nth, endonuclease III Back     alignment and domain information
>gnl|CDD|223200 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|211589 TIGR00588, ogg, 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information
>gnl|CDD|197771 smart00525, FES, iron-sulpphur binding domain in DNA-(apurinic or apyrimidinic site) lyase (subfamily of ENDO3) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 960
PF15628103 RRM_DME: RRM in Demeter 100.0
COG0177211 Nth Predicted EndoIII-related endonuclease [DNA re 100.0
PRK10702211 endonuclease III; Provisional 100.0
COG2231215 Uncharacterized protein related to Endonuclease II 100.0
TIGR01084275 mutY A/G-specific adenine glycosylase. This equiva 100.0
PRK10880350 adenine DNA glycosylase; Provisional 100.0
PRK13913218 3-methyladenine DNA glycosylase; Provisional 99.98
TIGR01083191 nth endonuclease III. This equivalog model identif 99.98
KOG1921286 consensus Endonuclease III [Replication, recombina 99.97
PRK13910289 DNA glycosylase MutY; Provisional 99.97
COG1194342 MutY A/G-specific DNA glycosylase [DNA replication 99.94
smart00478149 ENDO3c endonuclease III. includes endonuclease III 99.92
cd00056158 ENDO3c endonuclease III; includes endonuclease III 99.89
PRK01229208 N-glycosylase/DNA lyase; Provisional 99.86
KOG2457555 consensus A/G-specific adenine DNA glycosylase [Re 99.79
TIGR00588310 ogg 8-oxoguanine DNA-glycosylase (ogg). All protei 99.76
TIGR03252177 uncharacterized HhH-GPD family protein. This model 99.69
COG0122285 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine 99.62
PRK10308283 3-methyl-adenine DNA glycosylase II; Provisional 99.48
KOG2875323 consensus 8-oxoguanine DNA glycosylase [Replicatio 99.4
PF00730108 HhH-GPD: HhH-GPD superfamily base excision DNA rep 99.38
KOG1918254 consensus 3-methyladenine DNA glycosidase [Replica 99.19
PF1562932 Perm-CXXC: Permuted single zf-CXXC unit 99.17
COG1059210 Thermostable 8-oxoguanine DNA glycosylase [DNA rep 98.27
PF0063330 HHH: Helix-hairpin-helix motif; InterPro: IPR00044 97.39
PF1057617 EndIII_4Fe-2S: Iron-sulfur binding domain of endon 96.43
PF09674232 DUF2400: Protein of unknown function (DUF2400); In 96.27
TIGR02757229 conserved hypothetical protein TIGR02757. Members 95.81
smart0052526 FES FES domain. iron-sulpphur binding domain in DN 95.54
PF1282664 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS 91.16
smart0027826 HhH1 Helix-hairpin-helix DNA-binding motif class 1 90.35
PF1471668 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HU 87.48
PRK10353187 3-methyl-adenine DNA glycosylase I; Provisional 86.58
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 86.0
PRK13901196 ruvA Holliday junction DNA helicase RuvA; Provisio 82.77
TIGR0042669 competence protein ComEA helix-hairpin-helix repea 80.98
>PF15628 RRM_DME: RRM in Demeter Back     alignment and domain information 
Probab=100.00  E-value=3.2e-70  Score=498.99  Aligned_cols=103  Identities=82%  Similarity=1.488  Sum_probs=102.1

Q ss_pred             eeEEeeccccccCCccCCccceeeeeeeeccCCCCCCcccchhhhccCCceeEEecCChhhhcccCCHHHHHHHhhccce
Q 002141          843 GTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYV  922 (960)
Q Consensus       843 gTiLiPCRTAmrG~FPLNGTYFQvNEVFaDh~SS~~PI~vpr~~iw~L~rr~vyfGtSv~sIfkglt~~~Iq~cF~~G~v  922 (960)
                      |||||||||||||+|||||||||||||||||+||+|||+|||+|||+|+||+|||||||+|||||||++|||+|||+|||
T Consensus         1 gtiLiPCrtAmrg~FPLnGTYFQ~nEVFaD~~Ss~~Pi~vpr~~iw~L~rr~vYfGtsv~SIfrGls~~eIq~cF~~G~V   80 (103)
T PF15628_consen    1 GTILIPCRTAMRGSFPLNGTYFQVNEVFADHESSRNPIDVPRELIWNLPRRIVYFGTSVSSIFRGLSREEIQQCFWKGFV   80 (103)
T ss_pred             CceEeeehhhhCCccccCceEEEEEEEEeccccccCCeeccHHHhhcCCceEEEecCcHHHHhcccCHHHHHHHHhcCcE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecccccccCCcccccccccCc
Q 002141          923 CVRGFDQKSRAPRPLMARLHFPA  945 (960)
Q Consensus       923 CVR~Fdr~tr~PrpL~~rlh~~~  945 (960)
                      |||||||+||+||||++|||+++
T Consensus        81 CVR~FDr~Tr~PrpL~~rLH~~~  103 (103)
T PF15628_consen   81 CVRGFDRKTRAPRPLCARLHFPA  103 (103)
T ss_pred             EEeecccccCCCcchhhhccCCC
Confidence            99999999999999999999985

>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10702 endonuclease III; Provisional Back     alignment and domain information
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01084 mutY A/G-specific adenine glycosylase Back     alignment and domain information
>PRK10880 adenine DNA glycosylase; Provisional Back     alignment and domain information
>PRK13913 3-methyladenine DNA glycosylase; Provisional Back     alignment and domain information
>TIGR01083 nth endonuclease III Back     alignment and domain information
>KOG1921 consensus Endonuclease III [Replication, recombination and repair] Back     alignment and domain information
>PRK13910 DNA glycosylase MutY; Provisional Back     alignment and domain information
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00478 ENDO3c endonuclease III Back     alignment and domain information
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>PRK01229 N-glycosylase/DNA lyase; Provisional Back     alignment and domain information
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair] Back     alignment and domain information
>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information
>TIGR03252 uncharacterized HhH-GPD family protein Back     alignment and domain information
>COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional Back     alignment and domain information
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair] Back     alignment and domain information
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4 Back     alignment and domain information
>KOG1918 consensus 3-methyladenine DNA glycosidase [Replication, recombination and repair] Back     alignment and domain information
>PF15629 Perm-CXXC: Permuted single zf-CXXC unit Back     alignment and domain information
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] Back     alignment and domain information
>PF10576 EndIII_4Fe-2S: Iron-sulfur binding domain of endonuclease III; InterPro: IPR003651 Endonuclease III (4 Back     alignment and domain information
>PF09674 DUF2400: Protein of unknown function (DUF2400); InterPro: IPR014127 Members of this uncharacterised protein family are found sporadically, so far only among spirochetes, epsilon and delta proteobacteria, and Bacteroides Back     alignment and domain information
>TIGR02757 conserved hypothetical protein TIGR02757 Back     alignment and domain information
>smart00525 FES FES domain Back     alignment and domain information
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B Back     alignment and domain information
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1 Back     alignment and domain information
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A Back     alignment and domain information
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query960
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 3e-26
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 7e-14
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 2e-13
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 4e-12
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 4e-12
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 7e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 2e-06
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 4e-06
1kg2_A225 A/G-specific adenine glycosylase; DNA repair, hydr 6e-04
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Length = 218 Back     alignment and structure
 Score =  106 bits (267), Expect = 3e-26
 Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 10/170 (5%)

Query: 429 KKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEW 488
           K        D ++ + +   + +K+A  ++  G  N  A R+ D    +++D  S     
Sbjct: 56  KNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQS----- 110

Query: 489 LRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPE 548
             +   +  +E+LL  +G+G +S + +           VD        +LG        +
Sbjct: 111 FENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEI--EDYD 168

Query: 549 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY-ELHYQMITFGKVFCTK 597
            LQ    +     E++   L      +    LY   H +++ F K     
Sbjct: 169 ELQHFFEKGVQ--ENLNSALALYENTISLAQLYARFHGKIVEFSKQKLEL 216
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Length = 207 Back     alignment and structure
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Length = 226 Back     alignment and structure
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Length = 290 Back     alignment and structure
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Length = 211 Back     alignment and structure
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Length = 360 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Length = 219 Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Length = 295 Back     alignment and structure
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Length = 225 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query960
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 100.0
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 100.0
1kg2_A225 A/G-specific adenine glycosylase; DNA repair, hydr 100.0
1kea_A221 Possible G-T mismatches repair enzyme; DNA repair, 100.0
3n5n_X287 A/G-specific adenine DNA glycosylase; alpha-helice 100.0
3fsp_A369 A/G-specific adenine glycosylase; protein-DNA comp 100.0
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 99.95
3fhf_A214 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.89
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.88
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 99.86
4b21_A232 Probable DNA-3-methyladenine glycosylase 2; hydrol 99.86
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 99.85
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 99.84
3s6i_A228 DNA-3-methyladenine glycosylase 1; DNA glycosylase 99.83
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 99.81
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 99.8
1mpg_A282 ALKA, 3-methyladenine DNA glycosylase II; DNA repa 99.75
4e9f_A161 Methyl-CPG-binding domain protein 4; HHH DNA glyco 99.75
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 99.74
1x2i_A75 HEF helicase/nuclease; alpha helix, helix-hairpin- 84.1
2a1j_B91 DNA excision repair protein ERCC-1; XPF, xeroderma 82.02
2ofk_A183 3-methyladenine DNA glycosylase I, constitutive; D 81.89
1z00_A89 DNA excision repair protein ERCC-1; helix-hairpin- 81.74
1kft_A78 UVRC, excinuclease ABC subunit C; helix-hairpin-he 81.42
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Back     alignment and structure
Probab=100.00  E-value=7.4e-36  Score=307.87  Aligned_cols=175  Identities=21%  Similarity=0.341  Sum_probs=158.9

Q ss_pred             cccccCCcHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHcCCHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhcCCCCch
Q 002141          408 KEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLE  487 (960)
Q Consensus       408 ~~~~QnT~W~nL~kaL~nL~~k~er~~~~~g~~TpEaLA~As~eELeeLIRp~Gfyn~KAkrIk~lA~~Ive~yGgiDLe  487 (960)
                      ....|+|.|.++.+...+|..         .++||++|++++.++|+++|+++|||++||++|+++|+.+.++|++    
T Consensus        40 ~IlsQqts~~~v~~~~~~l~~---------~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g----  106 (226)
T 1orn_A           40 VVLSAQCTDALVNKVTKRLFE---------KYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNG----  106 (226)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHH---------HCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTT----
T ss_pred             HHHhCCCcHHHHHHHHHHHHH---------HCCCHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC----
Confidence            457899999999998888752         3689999999999999999999999999999999999999998887    


Q ss_pred             hhhcCChHHHHHHHHhCCCccHHHHHHHHHHhcCCeeeecchHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCchHHHHHh
Q 002141          488 WLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY  567 (960)
Q Consensus       488 ~Lr~vP~deareeLLsLpGIGpKTAd~ILLfafgrpvfpVDThV~RIl~RLG~V~~~~tpEklek~LeellP~~e~Iqk~  567 (960)
                         .+|..  +++|++|||||+|||++||+|+||+|+||||+||.|++.|+||+....+|++++..+++++|      . 
T Consensus       107 ---~~p~~--~~~L~~lpGIG~~TA~~il~~a~g~~~~~vD~~v~Rv~~rlg~~~~~~~~~~~~~~l~~~~p------~-  174 (226)
T 1orn_A          107 ---EVPRD--RDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIP------K-  174 (226)
T ss_dssp             ---SCCSC--HHHHTTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHSC------G-
T ss_pred             ---CcHHH--HHHHHHCCCccHHHHHHHHHHHCCCceeeeCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcC------h-
Confidence               56654  89999999999999999999999999999999999999999998756789999999988888      1 


Q ss_pred             hhhhhhcCChhhHHHHHHHHHHHhHhhcccCCCCCCCCCCchhchhhhhc
Q 002141          568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASA  617 (960)
Q Consensus       568 LW~rL~klD~e~l~EfH~lLVefGK~ICt~rkP~Cd~CPLr~~C~yyas~  617 (960)
                                +.+.+||.+||+||+.+|++++|+|+.|||++.|+++.+.
T Consensus       175 ----------~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~  214 (226)
T 1orn_A          175 ----------EEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKR  214 (226)
T ss_dssp             ----------GGHHHHHHHHHHHHHHTSCSSCCCGGGCTTGGGCHHHHHH
T ss_pred             ----------hhHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhhhhHhhc
Confidence                      2457999999999999999999999999999999998764
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Back     alignment and structure
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Back     alignment and structure
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2 Back     alignment and structure
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens} Back     alignment and structure
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* Back     alignment and structure
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Back     alignment and structure
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Back     alignment and structure
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A* Back     alignment and structure
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Back     alignment and structure
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} Back     alignment and structure
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Back     alignment and structure
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Back     alignment and structure
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* Back     alignment and structure
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Back     alignment and structure
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 Back     alignment and structure
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A* Back     alignment and structure
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 960
d1pu6a_217 a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III 4e-22
d1orna_214 a.96.1.1 (A:) Endonuclease III {Escherichia coli [ 2e-09
d2abka_211 a.96.1.1 (A:) Endonuclease III {Escherichia coli [ 3e-09
d1kg2a_224 a.96.1.2 (A:) Catalytic domain of MutY {Escherichi 2e-08
d2noha1190 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Hum 3e-08
d1keaa_217 a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Me 5e-07
d1rrqa1221 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacil 7e-07
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Length = 217 Back     information, alignment and structure

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase III (MagIII)
domain: 3-Methyladenine DNA glycosylase III (MagIII)
species: Helicobacter pylori [TaxId: 210]

 Score = 93.7 bits (232), Expect = 4e-22
 Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 10/170 (5%)

Query: 429 KKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEW 488
           K        D ++ + +   + +K+A  ++  G  N  A R+ D    +++D      + 
Sbjct: 55  KNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDF-----QS 109

Query: 489 LRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPE 548
             +   +  +E+LL  +G+G +S + +           VD        +LG        +
Sbjct: 110 FENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEI--EDYD 167

Query: 549 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY-ELHYQMITFGKVFCTK 597
            LQ    +     E++   L      +    LY   H +++ F K     
Sbjct: 168 ELQHFFEKGVQ--ENLNSALALYENTISLAQLYARFHGKIVEFSKQKLEL 215
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Length = 211 Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Length = 224 Back     information, alignment and structure
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 190 Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Length = 217 Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Length = 221 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query960
d2abka_211 Endonuclease III {Escherichia coli [TaxId: 562]} 100.0
d1orna_214 Endonuclease III {Escherichia coli [TaxId: 562]} 100.0
d1keaa_217 Thymine-DNA glycosylase {Archaeon Methanobacterium 100.0
d1kg2a_224 Catalytic domain of MutY {Escherichia coli [TaxId: 100.0
d1rrqa1221 Catalytic domain of MutY {Bacillus stearothermophi 100.0
d1pu6a_217 3-Methyladenine DNA glycosylase III (MagIII) {Heli 99.97
d2noha1190 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 99.75
d1ngna_144 Mismatch-specific thymine glycosylase domain of th 99.68
d1mpga1183 3-Methyladenine DNA glycosylase II (gene alkA or a 99.68
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 90.79
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 90.23
d2fmpa182 DNA polymerase beta, N-terminal (8 kD)-domain {Hum 88.51
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 88.3
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 86.16
d2bcqa176 DNA polymerase lambda {Human (Homo sapiens) [TaxId 85.7
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 85.69
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 84.56
d2a1jb178 DNA excision repair protein ERCC-1 {Human (Homo sa 82.55
d1nkua_187 3-Methyladenine DNA glycosylase I (Tag) {Escherich 80.01
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.6e-38  Score=319.91  Aligned_cols=175  Identities=22%  Similarity=0.265  Sum_probs=160.3

Q ss_pred             ccccccCCcHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHcCCHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhcCCCCc
Q 002141          407 SKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL  486 (960)
Q Consensus       407 ~~~~~QnT~W~nL~kaL~nL~~k~er~~~~~g~~TpEaLA~As~eELeeLIRp~Gfyn~KAkrIk~lA~~Ive~yGgiDL  486 (960)
                      +....|+|.|++|.+++.+|..         ..++|++|++|+.++|+++|+++|||++||++|+++|+.|.++|||   
T Consensus        35 ~~iLsqqT~~~~v~~~~~~l~~---------~~~t~~~la~a~~~~l~~~i~~~G~y~~Ka~~l~~~a~~i~~~~~g---  102 (211)
T d2abka_          35 AVLLSAQATDVSVNKATAKLYP---------VANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG---  102 (211)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHTT---------TCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTT---
T ss_pred             HHHHhccchHHHHHHHHHHHHH---------hccChHHHHhhhHhHhHHHHHHhhhhhhHHHHHHHHHHHHHHHhcC---
Confidence            4567899999999999999963         3589999999999999999999999999999999999999999999   


Q ss_pred             hhhhcCChHHHHHHHHhCCCccHHHHHHHHHHhcCCeeeecchHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCchHHHHH
Q 002141          487 EWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK  566 (960)
Q Consensus       487 e~Lr~vP~deareeLLsLpGIGpKTAd~ILLfafgrpvfpVDThV~RIl~RLG~V~~~~tpEklek~LeellP~~e~Iqk  566 (960)
                          .+|.+  +++|++|||||+|||++||+|+||+|+|+||+||+||+.|+||++. .++.+++..+.+++|      .
T Consensus       103 ----~~p~~--~~~L~~LpGVG~~TA~~Il~~a~~~p~~~vD~nv~Rv~~R~g~~~~-~~~~~~~~~~~~~~p------~  169 (211)
T d2abka_         103 ----EVPED--RAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPG-KNVEQVEEKLLKVVP------A  169 (211)
T ss_dssp             ----SCCSC--HHHHHHSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCSSCC-SSHHHHHHHHHHHSC------G
T ss_pred             ----chhHH--HHHHHHHHhhchHHHHHHHHHHhcCccccccHHHHHHHHHhccCcc-chhhHHHHHHhhcCc------c
Confidence                78887  8999999999999999999999999999999999999999999874 678888888888877      3


Q ss_pred             hhhhhhhcCChhhHHHHHHHHHHHhHhhcccCCCCCCCCCCchhchhhhhc
Q 002141          567 YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASA  617 (960)
Q Consensus       567 ~LW~rL~klD~e~l~EfH~lLVefGK~ICt~rkP~Cd~CPLr~~C~yyas~  617 (960)
                      ..|           ++||++||+||+.+|++++|+|+.|||++.|+||.+.
T Consensus       170 ~~~-----------~~~~~~l~~~G~~vC~~~~P~C~~Cpl~~~C~~~~k~  209 (211)
T d2abka_         170 EFK-----------VDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEKV  209 (211)
T ss_dssp             GGT-----------TTHHHHHHHHHHHTSCSSSCCGGGCTTGGGCCCTTCS
T ss_pred             ccH-----------HHHHHHHHHHhhhhccCCCCCCCCCCCcccCCCcCcC
Confidence            334           4799999999999999999999999999999998763
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure